BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6595
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|P Chain P, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|DD Chain d, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|RR Chain r, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|B Chain B, Mouse Constitutive 20s Proteasome
pdb|3UNE|P Chain P, Mouse Constitutive 20s Proteasome
pdb|3UNE|DD Chain d, Mouse Constitutive 20s Proteasome
pdb|3UNE|RR Chain r, Mouse Constitutive 20s Proteasome
pdb|3UNF|B Chain B, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|P Chain P, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|B Chain B, Mouse 20s Immunoproteasome
pdb|3UNH|P Chain P, Mouse 20s Immunoproteasome
Length = 261
Score = 91.7 bits (226), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 53/70 (75%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI HAGTCLGILA DG+LLAAE+RN +KLLDE S
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 62
Query: 95 EKIYKLHDSL 104
EKIYKL++ +
Sbjct: 63 EKIYKLNEDM 72
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 53/70 (75%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI HAGTCLGILA DG+LLAAE+RN +KLLDE S
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 62
Query: 95 EKIYKLHDSL 104
EKIYKL++ +
Sbjct: 63 EKIYKLNEDM 72
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 55/72 (76%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYA+E+ISHAGT +GI+A DGI+LAAE++ T+ LL++ T++
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTST 62
Query: 95 EKIYKLHDSLNI 106
EK+YKL+D + +
Sbjct: 63 EKLYKLNDKIAV 74
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 55/72 (76%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYA+E+ISHAGT +GI+A DGI+LAAE++ T+ LL++ T++
Sbjct: 4 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTST 63
Query: 95 EKIYKLHDSLNI 106
EK+YKL+D + +
Sbjct: 64 EKLYKLNDKIAV 75
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 82.0 bits (201), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 55/72 (76%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYA+E+ISHAGT +GI+A DGI+LAAE++ T+ LL++ T++
Sbjct: 4 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTST 63
Query: 95 EKIYKLHDSLNI 106
EK+YKL+D + +
Sbjct: 64 EKLYKLNDKIAV 75
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA+E+ISHAGT +GI+A DGI+LAAE++ T+ LL++ T++EK+YKL+D
Sbjct: 3 FSPE-GRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLND 61
Query: 103 SLNI 106
+ +
Sbjct: 62 KIAV 65
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 51/58 (87%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNI 106
RLYQVEYA+E+ISHAGT +GI+A DGI+LAAE++ T+ LL++ T++EK+YKL+D + +
Sbjct: 5 RLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAV 62
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T +GI ++G++L A+KR +KLL E T EKIYK+ +
Sbjct: 6 FSPD-GRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLL-EADTIEKIYKIDE 63
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RL+QVEYA EA+ T +GI ++G++L A+KR+ + ++Y+++
Sbjct: 11 RLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKID 62
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|B Chain B, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|C Chain C, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|D Chain D, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|E Chain E, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|F Chain F, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|G Chain G, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
Length = 246
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T +GI ++G++L A+KR +KLL E T EKIYK+ +
Sbjct: 15 FSPD-GRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLL-EKDTIEKIYKIDE 72
Query: 103 SL 104
+
Sbjct: 73 HI 74
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RL+QVEYA EA+ T +GI ++G++L A+KR+ + ++Y+++
Sbjct: 20 RLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKID 71
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ T +GI +DG++LA ++R T+KL+ + + EKI+++ D
Sbjct: 19 FSPE-GRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLV-KIRSIEKIFQIDD 76
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RLYQVEYA EA+ T +GI +DG++LA ++R+ + + +++Q++
Sbjct: 24 RLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQID 75
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|R Chain R, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|FF Chain f, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|TT Chain t, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|D Chain D, Mouse Constitutive 20s Proteasome
pdb|3UNE|R Chain R, Mouse Constitutive 20s Proteasome
pdb|3UNE|FF Chain f, Mouse Constitutive 20s Proteasome
pdb|3UNE|TT Chain t, Mouse Constitutive 20s Proteasome
pdb|3UNF|D Chain D, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|R Chain R, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|D Chain D, Mouse 20s Immunoproteasome
pdb|3UNH|R Chain R, Mouse 20s Immunoproteasome
Length = 241
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
+F P RL+QVEYA+EAI T +GI +G+ LA EKR T+ L+ E ++ EKI ++
Sbjct: 14 TFSPE-GRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLM-EPSSIEKIVEI 70
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA+EAI T +GI +G+ LA EKR+ P M +E +E +H
Sbjct: 20 RLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITS-----PLMEP-SSIEKIVEIDAH 73
Query: 63 AGTCLGILAQDGILLAAEKR 82
G + L D L + R
Sbjct: 74 IGCAMSGLIADAKTLIDKAR 93
>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
pdb|2Z5C|F Chain F, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
Length = 262
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
+F P RL+QVEY++EAI T +GI ++G++L EKR T+ LL E + EKI ++
Sbjct: 16 TFSPE-GRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLL-ESDSIEKIVEI 72
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RL+QVEY++EAI T +GI ++G++L EKR
Sbjct: 22 RLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKR 55
>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 261
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
+F P RL+QVEY++EAI T +GI ++G++L EKR T+ LL E + EKI ++
Sbjct: 15 TFSPE-GRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLL-ESDSIEKIVEI 71
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RL+QVEY++EAI T +GI ++G++L EKR
Sbjct: 21 RLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKR 54
>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|D Chain D, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|R Chain R, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|D Chain D, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|R Chain R, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3OEU|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3UN4|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4B4T|E Chain E, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 260
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
+F P RL+QVEY++EAI T +GI ++G++L EKR T+ LL E + EKI ++
Sbjct: 14 TFSPE-GRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLL-ESDSIEKIVEI 70
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RL+QVEY++EAI T +GI ++G++L EKR
Sbjct: 20 RLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKR 53
>pdb|1VSY|E Chain E, Proteasome Activator Complex
pdb|1VSY|S Chain S, Proteasome Activator Complex
pdb|3L5Q|J Chain J, Proteasome Activator Complex
pdb|3L5Q|V Chain V, Proteasome Activator Complex
pdb|3MG6|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 250
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
+F P RL+QVEY++EAI T +GI ++G++L EKR T+ LL E + EKI ++
Sbjct: 14 TFSPE-GRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLL-ESDSIEKIVEI 70
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RL+QVEY++EAI T +GI ++G++L EKR
Sbjct: 20 RLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKR 53
>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|D Chain D, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|R Chain R, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|D Chain D, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|D Chain D, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|R Chain R, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|D Chain D, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|R Chain R, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|D Chain D, Proteasome Inhibition By Fellutamide B
pdb|3D29|R Chain R, Proteasome Inhibition By Fellutamide B
pdb|3E47|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|D Chain D, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|R Chain R, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|D Chain D, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|R Chain R, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|D Chain D, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|R Chain R, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|D Chain D, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|R Chain R, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|D Chain D, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|R Chain R, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|D Chain D, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|R Chain R, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|D Chain D, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|R Chain R, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|D Chain D, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|R Chain R, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|D Chain D, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|R Chain R, 20s Yeast Proteasome In Complex With Glidobactin
Length = 242
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
+F P RL+QVEY++EAI T +GI ++G++L EKR T+ LL E + EKI ++
Sbjct: 6 TFSPE-GRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLL-ESDSIEKIVEI 62
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RL+QVEY++EAI T +GI ++G++L EKR
Sbjct: 12 RLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKR 45
>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|R Chain R, A Gated Channel Into The Proteasome Core Particle
Length = 241
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
+F P RL+QVEY++EAI T +GI ++G++L EKR T+ LL E + EKI ++
Sbjct: 14 TFSPE-GRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLL-ESDSIEKIVEI 70
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RL+QVEY++EAI T +GI ++G++L EKR
Sbjct: 20 RLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKR 53
>pdb|3UNB|F Chain F, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|T Chain T, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|HH Chain h, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|VV Chain v, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|F Chain F, Mouse Constitutive 20s Proteasome
pdb|3UNE|T Chain T, Mouse Constitutive 20s Proteasome
pdb|3UNE|HH Chain h, Mouse Constitutive 20s Proteasome
pdb|3UNE|VV Chain v, Mouse Constitutive 20s Proteasome
pdb|3UNF|F Chain F, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|T Chain T, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|F Chain F, Mouse 20s Immunoproteasome
pdb|3UNH|T Chain T, Mouse 20s Immunoproteasome
Length = 255
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTT 93
+F P R++QVEYAM+A+ ++ T +GI +DG++ EK +KL +EG+
Sbjct: 14 TFSPD-GRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN 64
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
R++QVEYAM+A+ ++ T +GI +DG++ EK + RL+ V+ H
Sbjct: 20 RVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVD------RH 73
Query: 63 AGTCLGILAQDGILLA 78
G + L D LA
Sbjct: 74 VGMAVAGLLADARSLA 89
>pdb|1IRU|G Chain G, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
pdb|1IRU|U Chain U, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
Length = 254
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTT 93
+F P R++QVEYAM+A+ ++ T +GI +DG++ EK +KL +EG+
Sbjct: 13 TFSPD-GRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN 63
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
R++QVEYAM+A+ ++ T +GI +DG++ EK + RL+ V+ H
Sbjct: 19 RVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVD------RH 72
Query: 63 AGTCLGILAQDGILLA 78
G + L D LA
Sbjct: 73 VGMAVAGLLADARSLA 88
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
+F P RL+QVEY +EAI T +GI +G+ LA EKR T+ L+ E ++ EKI ++
Sbjct: 14 TFSPE-GRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLM-EPSSIEKIVEI 70
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEY +EAI T +GI +G+ LA EKR+ P M +E +E +H
Sbjct: 20 RLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITS-----PLMEP-SSIEKIVEIDAH 73
Query: 63 AGTCLGILAQDGILLAAEKR 82
G + L D L + R
Sbjct: 74 IGCAMSGLIADAKTLIDKAR 93
>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome
pdb|3UNE|Q Chain Q, Mouse Constitutive 20s Proteasome
pdb|3UNE|EE Chain e, Mouse Constitutive 20s Proteasome
pdb|3UNE|SS Chain s, Mouse Constitutive 20s Proteasome
pdb|3UNF|C Chain C, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Q Chain Q, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|C Chain C, Mouse 20s Immunoproteasome
pdb|3UNH|Q Chain Q, Mouse 20s Immunoproteasome
Length = 248
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 50 LYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
L+QVEYA EA+ T +G+ +D ++L EK++ KL DE T KI L D++
Sbjct: 16 LFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTV-RKICALDDNV 69
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 4 LYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
L+QVEYA EA+ T +G+ +D ++L EK+
Sbjct: 16 LFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKK 48
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 50 LYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
L+QVEYA EA+ T +G+ +D ++L EK++ KL DE T KI L D++
Sbjct: 16 LFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTV-RKICALDDNV 69
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 4 LYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
L+QVEYA EA+ T +G+ +D ++L EK+
Sbjct: 16 LFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKK 48
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T LG+ +G+LL ++K+ ++L+++ + EKI + D
Sbjct: 19 FSPD-GRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSI-EKIQLIDD 76
Query: 103 SLNIIT 108
+ +T
Sbjct: 77 YVAAVT 82
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRL 37
RL+QVEYA EA+ T LG+ +G+LL ++K++
Sbjct: 24 RLFQVEYAREAVKKGSTALGMKFANGVLLISDKKV 58
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T LG+ +G+LL ++K+ ++L+++ + EKI + D
Sbjct: 19 FSPD-GRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSI-EKIQLIDD 76
Query: 103 SLNIIT 108
+ +T
Sbjct: 77 YVAAVT 82
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRL 37
RL+QVEYA EA+ T LG+ +G+LL ++K++
Sbjct: 24 RLFQVEYAREAVKKGSTALGMKFANGVLLISDKKV 58
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|B Chain B, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|C Chain C, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|D Chain D, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|E Chain E, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|F Chain F, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|G Chain G, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 233
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T LG+ +G+LL ++K+ ++L+++ + EKI + D
Sbjct: 15 FSPD-GRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSI-EKIQLIDD 72
Query: 103 SLNIIT 108
+ +T
Sbjct: 73 YVAAVT 78
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRL 37
RL+QVEYA EA+ T LG+ +G+LL ++K++
Sbjct: 20 RLFQVEYAREAVKKGSTALGMKFANGVLLISDKKV 54
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|B Chain B, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|C Chain C, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|D Chain D, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|E Chain E, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|F Chain F, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|G Chain G, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
Length = 233
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T LG+ +G+LL ++K+ ++L+++ + EKI + D
Sbjct: 15 FSPD-GRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSI-EKIQLIDD 72
Query: 103 SLNIIT 108
+ +T
Sbjct: 73 YVAAVT 78
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRL 37
RL+QVEYA EA+ T LG+ +G+LL ++K++
Sbjct: 20 RLFQVEYAREAVKKGSTALGMKFANGVLLISDKKV 54
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
pdb|1YA7|A Chain A, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|B Chain B, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|C Chain C, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|D Chain D, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|E Chain E, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|F Chain F, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|G Chain G, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|3C91|A Chain A, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|B Chain B, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|C Chain C, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|D Chain D, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|E Chain E, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|F Chain F, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|G Chain G, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|O Chain O, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|P Chain P, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|R Chain R, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|S Chain S, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|T Chain T, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|U Chain U, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|A Chain A, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|B Chain B, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|C Chain C, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|D Chain D, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|E Chain E, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|F Chain F, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|G Chain G, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|O Chain O, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|P Chain P, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|R Chain R, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|S Chain S, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|T Chain T, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|U Chain U, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3IPM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 233
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T LG+ +G+LL ++K+ ++L+++ + EKI + D
Sbjct: 15 FSPD-GRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSI-EKIQLIDD 72
Query: 103 SLNIIT 108
+ +T
Sbjct: 73 YVAAVT 78
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRL 37
RL+QVEYA EA+ T LG+ +G+LL ++K++
Sbjct: 20 RLFQVEYAREAVKKGSTALGMKFANGVLLISDKKV 54
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 227
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T LG+ +G+LL ++K+ ++L+++ + EKI + D
Sbjct: 9 FSPD-GRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSI-EKIQLIDD 66
Query: 103 SLNIIT 108
+ +T
Sbjct: 67 YVAAVT 72
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRL 37
RL+QVEYA EA+ T LG+ +G+LL ++K++
Sbjct: 14 RLFQVEYAREAVKKGSTALGMKFANGVLLISDKKV 48
>pdb|3UNB|G Chain G, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|U Chain U, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|II Chain i, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|WW Chain w, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|G Chain G, Mouse Constitutive 20s Proteasome
pdb|3UNE|U Chain U, Mouse Constitutive 20s Proteasome
pdb|3UNE|II Chain i, Mouse Constitutive 20s Proteasome
pdb|3UNE|WW Chain w, Mouse Constitutive 20s Proteasome
pdb|3UNF|G Chain G, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|U Chain U, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|G Chain G, Mouse 20s Immunoproteasome
pdb|3UNH|U Chain U, Mouse 20s Immunoproteasome
Length = 246
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 43 FLPHMSRLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLH 101
F P RLYQVEYA +AI+ G T + + +D ++ +K+ +KLLD T + ++K+
Sbjct: 16 FSPE-GRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH-LFKIT 73
Query: 102 DSLNII 107
+S+ +
Sbjct: 74 ESIGCV 79
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 3 RLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRLNQ---DFSFLPHMSRL 50
RLYQVEYA +AI+ G T + + +D ++ +K++ D S + H+ ++
Sbjct: 21 RLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKI 72
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|C Chain C, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Q Chain Q, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|C Chain C, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Q Chain Q, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|D Chain D, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|D Chain D, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 254
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 50 LYQVEYAMEAISHAGTC-LGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
++QVEYA+EA+ GTC +G+ ++ ++L E+R+T KL D T K+ K+
Sbjct: 17 IFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKI 67
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 4 LYQVEYAMEAISHAGTC-LGILAQDGILLAAEKRLN---QDFSFLP 45
++QVEYA+EA+ GTC +G+ ++ ++L E+R QD P
Sbjct: 17 IFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITP 61
>pdb|1VSY|D Chain D, Proteasome Activator Complex
pdb|1VSY|R Chain R, Proteasome Activator Complex
pdb|3L5Q|I Chain I, Proteasome Activator Complex
pdb|3L5Q|U Chain U, Proteasome Activator Complex
Length = 227
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 50 LYQVEYAMEAISHAGTC-LGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
++QVEYA+EA+ GTC +G+ ++ ++L E+R+T KL D T K+ K+
Sbjct: 1 IFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKI 51
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 4 LYQVEYAMEAISHAGTC-LGILAQDGILLAAEKRLN---QDFSFLP 45
++QVEYA+EA+ GTC +G+ ++ ++L E+R QD P
Sbjct: 1 IFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITP 45
>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Q Chain Q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|EE Chain e, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|SS Chain s, Mouse Constitutive 20s Proteasome In Complex With Pr-957
Length = 248
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 50 LYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
L+QVEYA EA+ T +G+ +D ++L K++ KL DE T KI L D++
Sbjct: 16 LFQVEYAQEAVKKGSTAVGVRGKDIVVLGVAKKSVAKLQDERTV-RKICALDDNV 69
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 4 LYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
L+QVEYA EA+ T +G+ +D ++L K+
Sbjct: 16 LFQVEYAQEAVKKGSTAVGVRGKDIVVLGVAKK 48
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|C Chain C, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Q Chain Q, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|C Chain C, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|X Chain X, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|C Chain C, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Q Chain Q, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|C Chain C, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Q Chain Q, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|C Chain C, Proteasome Inhibition By Fellutamide B
pdb|3D29|Q Chain Q, Proteasome Inhibition By Fellutamide B
pdb|3E47|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|C Chain C, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Q Chain Q, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|C Chain C, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Q Chain Q, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|C Chain C, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Q Chain Q, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|C Chain C, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Q Chain Q, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|C Chain C, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Q Chain Q, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|C Chain C, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Q Chain Q, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|C Chain C, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Q Chain Q, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|C Chain C, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Q Chain Q, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|C Chain C, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Q Chain Q, 20s Yeast Proteasome In Complex With Glidobactin
Length = 241
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 50 LYQVEYAMEAISHAGTC-LGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
++QVEYA+EA+ GTC +G+ ++ ++L E+R+T KL D T K+ K+
Sbjct: 15 IFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKI 65
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 4 LYQVEYAMEAISHAGTC-LGILAQDGILLAAEKRLN---QDFSFLP 45
++QVEYA+EA+ GTC +G+ ++ ++L E+R QD P
Sbjct: 15 IFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITP 59
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Q Chain Q, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 243
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 50 LYQVEYAMEAISHAGTC-LGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
++QVEYA+EA+ GTC +G+ ++ ++L E+R+T KL D T K+ K+
Sbjct: 17 IFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKI 67
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 4 LYQVEYAMEAISHAGTC-LGILAQDGILLAAEKRLN---QDFSFLP 45
++QVEYA+EA+ GTC +G+ ++ ++L E+R QD P
Sbjct: 17 IFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITP 61
>pdb|1IRU|A Chain A, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|O Chain O, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 246
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 43 FLPHMSRLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLH 101
F P RLYQVEYA +AI+ G T + + +D ++ +K+ +KLLD T + ++K+
Sbjct: 16 FSPE-GRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH-LFKIT 73
Query: 102 DSLNII 107
+++ +
Sbjct: 74 ENIGCV 79
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 3 RLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRLNQ---DFSFLPHMSRL 50
RLYQVEYA +AI+ G T + + +D ++ +K++ D S + H+ ++
Sbjct: 21 RLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKI 72
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLL 88
F P R +QVEYA++A+ + T +GI DG++ A EK T+KLL
Sbjct: 14 FSPD-GRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLL 58
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
R +QVEYA++A+ + T +GI DG++ A EK + +P + QV H
Sbjct: 19 RNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKL-LVPQKNVKIQV-----VDRH 72
Query: 63 AGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYK 99
G L DG L N+ +E + +K+YK
Sbjct: 73 IGCVYSGLIPDGRHL------VNRGREEAASFKKLYK 103
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLL 88
F P R +QVEYA++A+ + T +GI DG++ A EK T+KLL
Sbjct: 15 FSPD-GRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLL 59
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
R +QVEYA++A+ + T +GI DG++ A EK + +P + QV H
Sbjct: 20 RNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKL-LVPQKNVKIQV-----VDRH 73
Query: 63 AGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYK 99
G L DG L N+ +E + +K+YK
Sbjct: 74 IGCVYSGLIPDGRHL------VNRGREEAASFKKLYK 104
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 16
Length = 248
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLL 88
F P R +QVEYA++A+ + T +GI DG++ A EK T+KLL
Sbjct: 15 FSPD-GRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLL 59
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
R +QVEYA++A+ + T +GI DG++ A EK + +P + QV H
Sbjct: 20 RNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKL-LVPQKNVKIQV-----VDRH 73
Query: 63 AGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYK 99
G L DG L N+ +E + +K+YK
Sbjct: 74 IGCVYSGLIPDGRHL------VNRGREEAASFKKLYK 104
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At
2.4 Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At
2.4 Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With
The Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With
The Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex
With The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex
With The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex
With Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex
With Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible
Inhibitor Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible
Inhibitor Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel
Lead Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel
Lead Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin
C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin
C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLL 88
F P R +QVEYA++A+ + T +GI DG++ A EK T+KLL
Sbjct: 11 FSPD-GRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLL 55
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
R +QVEYA++A+ + T +GI DG++ A EK + +P + QV H
Sbjct: 16 RNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKL-LVPQKNVKIQV-----VDRH 69
Query: 63 AGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYK 99
G L DG L N+ +E + +K+YK
Sbjct: 70 IGCVYSGLIPDGRHL------VNRGREEAASFKKLYK 100
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 34
Length = 242
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLL 88
F P R +QVEYA++A+ + T +GI DG++ A EK T+KLL
Sbjct: 9 FSPD-GRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLL 53
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
R +QVEYA++A+ + T +GI DG++ A EK + +P + QV H
Sbjct: 14 RNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKL-LVPQKNVKIQV-----VDRH 67
Query: 63 AGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYK 99
G L DG L N+ +E + +K+YK
Sbjct: 68 IGCVYSGLIPDGRHL------VNRGREEAASFKKLYK 98
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|O Chain O, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|CC Chain c, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|QQ Chain q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|A Chain A, Mouse Constitutive 20s Proteasome
pdb|3UNE|O Chain O, Mouse Constitutive 20s Proteasome
pdb|3UNE|CC Chain c, Mouse Constitutive 20s Proteasome
pdb|3UNE|QQ Chain q, Mouse Constitutive 20s Proteasome
pdb|3UNF|A Chain A, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|O Chain O, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|A Chain A, Mouse 20s Immunoproteasome
pdb|3UNH|O Chain O, Mouse 20s Immunoproteasome
Length = 234
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDE 90
+F P +L Q+EYA+ A++ +GI A +G++LA EK+ + L DE
Sbjct: 12 TFSPS-GKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDE 59
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
+L Q+EYA+ A++ +GI A +G++LA EK+
Sbjct: 18 KLVQIEYALAAVAGGAPSVGIKAANGVVLATEKK 51
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
pdb|1IRU|P Chain P, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
Length = 233
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDE 90
+F P +L Q+EYA+ A++ +GI A +G++LA EK+ + L DE
Sbjct: 11 TFSPS-GKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDE 58
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
+L Q+EYA+ A++ +GI A +G++LA EK+
Sbjct: 17 KLVQIEYALAAVAGGAPSVGIKAANGVVLATEKK 50
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At
2.4 Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At
2.4 Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|A Chain A, Crystal Structure Of Salinosporamide A In Complex With
The Yeast 20s Proteasome
pdb|2FAK|O Chain O, Crystal Structure Of Salinosporamide A In Complex With
The Yeast 20s Proteasome
pdb|2GPL|A Chain A, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|O Chain O, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|A Chain A, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|O Chain O, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|A Chain A, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|O Chain O, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|A Chain A, Proteasome Inhibition By Fellutamide B
pdb|3D29|O Chain O, Proteasome Inhibition By Fellutamide B
pdb|3E47|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex
With The Epimer Form Of Spirolactacystin
pdb|3DY3|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex
With The Epimer Form Of Spirolactacystin
pdb|3DY4|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex
With Spirolactacystin
pdb|3DY4|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex
With Spirolactacystin
pdb|3GPJ|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible
Inhibitor Ligand
pdb|3GPW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible
Inhibitor Ligand
pdb|3HYE|A Chain A, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|O Chain O, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3NZJ|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZJ|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|A Chain A, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|O Chain O, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|A Chain A, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|O Chain O, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 6
pdb|3MG6|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 6
pdb|3MG7|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 8
pdb|3MG7|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 8
pdb|3MG8|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 16
pdb|3MG8|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 16
pdb|3OKJ|A Chain A, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel
Lead Structure Motif For Proteasome Inhibition
pdb|3OKJ|O Chain O, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel
Lead Structure Motif For Proteasome Inhibition
pdb|3OEU|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 24
pdb|3OEU|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 24
pdb|3OEV|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 25
pdb|3OEV|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 25
pdb|3TDD|A Chain A, Crystal Structure Of Yeast Cp In Complex With Belactosin
C
pdb|3TDD|O Chain O, Crystal Structure Of Yeast Cp In Complex With Belactosin
C
pdb|3SHJ|A Chain A, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|O Chain O, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 20
pdb|3SDI|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 20
pdb|3SDK|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 34
pdb|3SDK|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 34
pdb|4GK7|A Chain A, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|O Chain O, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|B Chain B, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|B Chain B, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|A Chain A, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|O Chain O, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|A Chain A, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|O Chain O, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 250
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKL 87
+F P +L Q++YA+ A+ T LGI A +G+++A EK++++ L
Sbjct: 11 TFSPS-GKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPL 55
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRL 50
+L Q++YA+ A+ T LGI A +G+++A EK+ + + +S++
Sbjct: 17 KLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKV 64
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 20
pdb|3SDI|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 20
Length = 233
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKL 87
+F P RL+QVEYA+EAI +G+ + +L A KRN ++L
Sbjct: 11 TFSP-TGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL 55
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA+EAI +G+ + +L A KR + S YQ + ++ H
Sbjct: 17 RLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSS-------YQ-KKIIKCDEH 68
Query: 63 AGTCLGILAQDGILLA 78
G L LA D +L+
Sbjct: 69 MGLSLAGLAPDARVLS 84
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At
2.4 Angstroms Resolution
pdb|1RYP|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast At
2.4 Angstroms Resolution
pdb|1G65|E Chain E, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|S Chain S, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|E Chain E, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|E Chain E, Crystal Structure Of Salinosporamide A In Complex With
The Yeast 20s Proteasome
pdb|2FAK|S Chain S, Crystal Structure Of Salinosporamide A In Complex With
The Yeast 20s Proteasome
pdb|2GPL|E Chain E, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|S Chain S, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|E Chain E, Proteasome Inhibition By Fellutamide B
pdb|3D29|S Chain S, Proteasome Inhibition By Fellutamide B
pdb|3E47|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex
With The Epimer Form Of Spirolactacystin
pdb|3DY3|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex
With The Epimer Form Of Spirolactacystin
pdb|3DY4|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex
With Spirolactacystin
pdb|3DY4|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex
With Spirolactacystin
pdb|3GPJ|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible
Inhibitor Ligand
pdb|3GPW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible
Inhibitor Ligand
pdb|3HYE|E Chain E, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|S Chain S, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|E Chain E, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|S Chain S, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|E Chain E, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|S Chain S, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|E Chain E, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel
Lead Structure Motif For Proteasome Inhibition
pdb|3OKJ|S Chain S, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel
Lead Structure Motif For Proteasome Inhibition
pdb|3OEU|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 24
pdb|3OEU|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 24
pdb|3OEV|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 25
pdb|3OEV|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 25
pdb|3TDD|E Chain E, Crystal Structure Of Yeast Cp In Complex With Belactosin
C
pdb|3TDD|S Chain S, Crystal Structure Of Yeast Cp In Complex With Belactosin
C
pdb|3SHJ|E Chain E, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|S Chain S, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDK|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 34
pdb|3SDK|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 34
pdb|4GK7|E Chain E, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|S Chain S, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|E Chain E, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|S Chain S, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|E Chain E, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|S Chain S, 20s Yeast Proteasome In Complex With Glidobactin
Length = 233
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKL 87
+F P RL+QVEYA+EAI +G+ + +L A KRN ++L
Sbjct: 11 TFSP-TGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL 55
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA+EAI +G+ + +L A KR + S YQ + ++ H
Sbjct: 17 RLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSS-------YQ-KKIIKCDEH 68
Query: 63 AGTCLGILAQDGILLA 78
G L LA D +L+
Sbjct: 69 MGLSLAGLAPDARVLS 84
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|S Chain S, A Gated Channel Into The Proteasome Core Particle
Length = 234
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKL 87
+F P RL+QVEYA+EAI +G+ + +L A KRN ++L
Sbjct: 12 TFSP-TGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL 56
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA+EAI +G+ + +L A KR + S YQ + ++ H
Sbjct: 18 RLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSS-------YQ-KKIIKCDEH 69
Query: 63 AGTCLGILAQDGILLA 78
G L LA D +L+
Sbjct: 70 MGLSLAGLAPDARVLS 85
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|E Chain E, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|S Chain S, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|E Chain E, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|S Chain S, Yeast 20s Proteasome:glidobactin A-Complex
pdb|1VSY|F Chain F, Proteasome Activator Complex
pdb|1VSY|T Chain T, Proteasome Activator Complex
pdb|3L5Q|K Chain K, Proteasome Activator Complex
pdb|3L5Q|W Chain W, Proteasome Activator Complex
pdb|3NZJ|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZJ|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 6
pdb|3MG6|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 6
pdb|3MG7|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 8
pdb|3MG7|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 8
pdb|3MG8|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 16
pdb|3MG8|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 16
pdb|3UN4|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|F Chain F, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 234
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKL 87
+F P RL+QVEYA+EAI +G+ + +L A KRN ++L
Sbjct: 12 TFSP-TGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL 56
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA+EAI +G+ + +L A KR + S YQ + ++ H
Sbjct: 18 RLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSS-------YQ-KKIIKCDEH 69
Query: 63 AGTCLGILAQDGILLA 78
G L LA D +L+
Sbjct: 70 MGLSLAGLAPDARVLS 85
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 235
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKL 87
+F P RL+QVEYA+EAI +G+ + +L A KRN ++L
Sbjct: 13 TFSP-TGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL 57
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA+EAI +G+ + +L A KR + S YQ + ++ H
Sbjct: 19 RLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSS-------YQ-KKIIKCDEH 70
Query: 63 AGTCLGILAQDGILLA 78
G L LA D +L+
Sbjct: 71 MGLSLAGLAPDARVLS 86
>pdb|1VSY|B Chain B, Proteasome Activator Complex
pdb|1VSY|P Chain P, Proteasome Activator Complex
pdb|3L5Q|G Chain G, Proteasome Activator Complex
pdb|3L5Q|S Chain S, Proteasome Activator Complex
Length = 231
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 52 QVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKL 87
Q++YA+ A+ T LGI A +G+++A EK++++ L
Sbjct: 1 QIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPL 36
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 6 QVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRL 50
Q++YA+ A+ T LGI A +G+++A EK+ + + +S++
Sbjct: 1 QIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKV 45
>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|U Chain U, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|G Chain G, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|U Chain U, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|G Chain G, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|U Chain U, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZJ|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex
With Ligand 2a
pdb|3NZW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 6
pdb|3MG6|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 6
pdb|3MG7|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 8
pdb|3MG7|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 8
pdb|3MG8|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 16
pdb|3MG8|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 16
pdb|3UN4|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|A Chain A, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|A Chain A, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 252
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
F P RLYQVEYA +A + L + +D ++ ++K+ +KLLD T S
Sbjct: 19 FSPE-GRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVS 70
>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At
2.4 Angstroms Resolution
pdb|1RYP|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast At
2.4 Angstroms Resolution
pdb|1G65|G Chain G, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|U Chain U, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|G Chain G, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|G Chain G, Crystal Structure Of Salinosporamide A In Complex With
The Yeast 20s Proteasome
pdb|2FAK|U Chain U, Crystal Structure Of Salinosporamide A In Complex With
The Yeast 20s Proteasome
pdb|2GPL|G Chain G, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|U Chain U, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|G Chain G, Proteasome Inhibition By Fellutamide B
pdb|3D29|U Chain U, Proteasome Inhibition By Fellutamide B
pdb|3E47|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex
With The Epimer Form Of Spirolactacystin
pdb|3DY3|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex
With The Epimer Form Of Spirolactacystin
pdb|3DY4|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex
With Spirolactacystin
pdb|3DY4|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex
With Spirolactacystin
pdb|3GPJ|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible
Inhibitor Ligand
pdb|3GPW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible
Inhibitor Ligand
pdb|3HYE|G Chain G, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|U Chain U, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|A Chain A, Proteasome Activator Complex
pdb|1VSY|O Chain O, Proteasome Activator Complex
pdb|3L5Q|A Chain A, Proteasome Activator Complex
pdb|3L5Q|C Chain C, Proteasome Activator Complex
pdb|3MG4|G Chain G, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|U Chain U, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|G Chain G, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|U Chain U, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|G Chain G, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel
Lead Structure Motif For Proteasome Inhibition
pdb|3OKJ|U Chain U, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel
Lead Structure Motif For Proteasome Inhibition
pdb|3OEU|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 24
pdb|3OEU|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 24
pdb|3OEV|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 25
pdb|3OEV|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 25
pdb|3TDD|G Chain G, Crystal Structure Of Yeast Cp In Complex With Belactosin
C
pdb|3TDD|U Chain U, Crystal Structure Of Yeast Cp In Complex With Belactosin
C
pdb|3SHJ|G Chain G, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|U Chain U, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 20
pdb|3SDI|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 20
pdb|3SDK|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 34
pdb|3SDK|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With
Compound 34
pdb|4GK7|G Chain G, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|U Chain U, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|G Chain G, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|U Chain U, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|G Chain G, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|U Chain U, 20s Yeast Proteasome In Complex With Glidobactin
Length = 243
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
F P RLYQVEYA +A + L + +D ++ ++K+ +KLLD T S
Sbjct: 10 FSPE-GRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVS 61
>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|S Chain S, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|GG Chain g, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|UU Chain u, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|E Chain E, Mouse Constitutive 20s Proteasome
pdb|3UNE|S Chain S, Mouse Constitutive 20s Proteasome
pdb|3UNE|GG Chain g, Mouse Constitutive 20s Proteasome
pdb|3UNE|UU Chain u, Mouse Constitutive 20s Proteasome
pdb|3UNF|E Chain E, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|S Chain S, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|E Chain E, Mouse 20s Immunoproteasome
pdb|3UNH|S Chain S, Mouse 20s Immunoproteasome
Length = 263
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 38 NQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKL 87
+ D + R++Q+EYAMEA+ +G+ ++ +L A KR ++L
Sbjct: 7 DNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL 56
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
R++Q+EYAMEA+ +G+ ++ +L A KR + + H ++ V+ +H
Sbjct: 18 RIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAA--HQKKILHVD------NH 69
Query: 63 AGTCLGILAQDGILL 77
G + L D LL
Sbjct: 70 IGISIAGLTADARLL 84
>pdb|1IRU|F Chain F, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
pdb|1IRU|T Chain T, Crystal Structure Of The Mammalian 20s Proteasome At
2.75 A Resolution
Length = 263
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
R++Q+EYAMEA+ +G+ ++ +L A KR + + H ++ V+ +H
Sbjct: 18 RIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAA--HQKKILHVD------NH 69
Query: 63 AGTCLGILAQDGILL 77
G + L D LL
Sbjct: 70 IGISIAGLTADARLL 84
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 38 NQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKL 87
+ D + R++Q+EYAMEA+ +G+ ++ +L A KR ++L
Sbjct: 7 DNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL 56
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108
T +G++ +DG+++A EKR T ++KIY++ D + + T
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTT 45
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 19 TCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTC 66
T +G++ +DG+++A EKR +F ++YQ+ M A++ AG+
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRM-AMTTAGSV 49
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
Length = 205
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 60 ISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+S + + + +DG++L A+ R T ++K+ ++HD +
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKI 50
>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|V Chain V, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|H Chain H, Mouse 20s Immunoproteasome
pdb|3UNH|V Chain V, Mouse 20s Immunoproteasome
Length = 234
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIY 98
T G++ +DG++L A+ R TN + + EKI+
Sbjct: 2 TIAGLVFRDGVILGADTRATNDSVVADKSCEKIH 35
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|1 Chain 1, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 215
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 60 ISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+S + + + +DG++L A+ R T ++K+ ++HD +
Sbjct: 16 VSLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKI 60
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
T +G++ D ++LA +KR + L ++K+YK+ D
Sbjct: 3 TTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDD 40
>pdb|1VSY|H Chain H, Proteasome Activator Complex
pdb|1VSY|V Chain V, Proteasome Activator Complex
pdb|3L5Q|B Chain B, Proteasome Activator Complex
pdb|3L5Q|D Chain D, Proteasome Activator Complex
Length = 196
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 67 LGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ + +DG++L A+ R T ++K+ ++HD +
Sbjct: 4 MAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKI 41
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|2 Chain 2, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|N Chain N, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|2 Chain 2, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|N Chain N, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|U Chain U, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|N Chain N, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|2 Chain 2, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|N Chain N, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|2 Chain 2, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|N Chain N, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|1 Chain 1, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|N Chain N, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|1 Chain 1, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|N Chain N, Proteasome Inhibition By Fellutamide B
pdb|3D29|2 Chain 2, Proteasome Inhibition By Fellutamide B
pdb|3E47|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|N Chain N, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|2 Chain 2, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|N Chain N, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|2 Chain 2, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|N Chain N, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|2 Chain 2, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|N Chain N, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|2 Chain 2, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|N Chain N, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|2 Chain 2, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|N Chain N, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|2 Chain 2, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|N Chain N, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|BB Chain b, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|H Chain H, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|N Chain N, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|BB Chain b, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|N Chain N, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|BB Chain b, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 196
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 67 LGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ + +DG++L A+ R T ++K+ ++HD +
Sbjct: 4 MAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKI 41
>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
pdb|3P8K|B Chain B, Crystal Structure Of A Putative Carbon-Nitrogen Family
Hydrolase From Staphylococcus Aureus
Length = 281
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 33 AEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
A+ L Q FSF+ H++ Y+V+ ++S+
Sbjct: 76 ADNNLGQSFSFIKHLAEKYKVDIVAGSVSN 105
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26
Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPHMS--RLYQVE 54
T +GI +D +++A E+R+ + +F+ H + +L+Q++
Sbjct: 10 TTVGITLKDAVIMATERRVTME-NFIMHKNGKKLFQID 46
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPHMS--RLYQVE 54
T +GI +D +++A E+R+ + +F+ H + +L+Q++
Sbjct: 10 TTVGITLKDAVIMATERRVTME-NFIMHKNGKKLFQID 46
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|I Chain I, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|J Chain J, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|K Chain K, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|L Chain L, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|M Chain M, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|N Chain N, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|V Chain V, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|W Chain W, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|X Chain X, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C91|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With An Open
Gate
pdb|3C92|H Chain H, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|I Chain I, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|J Chain J, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|K Chain K, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|L Chain L, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|M Chain M, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|N Chain N, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|V Chain V, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|W Chain W, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|X Chain X, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3C92|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With A Closed
Gate
pdb|3JRM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 203
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPHMS--RLYQVE 54
T +GI +D +++A E+R+ + +F+ H + +L+Q++
Sbjct: 2 TTVGITLKDAVIMATERRVTME-NFIMHKNGKKLFQID 38
>pdb|2QTR|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTR|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTR|C Chain C, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
Length = 189
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 2 SRLYQVEYAMEAISHAGTCLGILAQDG-------ILLAAEKRLNQDFSFL------PHMS 48
SRL +E A EA H CL L++ G +L +K + F F+ ++
Sbjct: 55 SRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLP 114
Query: 49 RLYQVEYAMEAISHAGTC 66
+ Y +E ++ ++ G
Sbjct: 115 KWYNIEALLDLVTFVGVA 132
>pdb|3DV2|A Chain A, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|C Chain C, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
pdb|3DV2|D Chain D, Crystal Structure Of Nicotinic Acid Mononucleotide
Adenylyltransferase From Bacillus Anthracis
Length = 201
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 2 SRLYQVEYAMEAISHAGTCLGILAQDG-------ILLAAEKRLNQDFSFL------PHMS 48
SRL +E A EA H CL L++ G +L +K + F F+ ++
Sbjct: 55 SRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLP 114
Query: 49 RLYQVEYAMEAISHAGTC 66
+ Y +E ++ ++ G
Sbjct: 115 KWYNIEALLDLVTFVGVA 132
>pdb|2QTM|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTM|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTN|A Chain A, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|2QTN|B Chain B, Crystal Structure Of Nicotinate Mononucleotide
Adenylyltransferase
pdb|3E27|A Chain A, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|B Chain B, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|C Chain C, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
pdb|3E27|D Chain D, Nicotinic Acid Mononucleotide (Namn) Adenylyltransferase
From Bacillus Anthracis: Product Complex
Length = 189
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 2 SRLYQVEYAMEAISHAGTCLGILAQDG-------ILLAAEKRLNQDFSFL------PHMS 48
SRL +E A EA H CL L++ G +L +K + F F+ ++
Sbjct: 55 SRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLP 114
Query: 49 RLYQVEYAMEAISHAGTC 66
+ Y +E ++ ++ G
Sbjct: 115 KWYNIEALLDLVTFVGVA 132
>pdb|3HFJ|A Chain A, Bacillus Anthracis Nicotinate Mononucleotide
Adenylytransferase (Nadd) In Complex With Inhibitor Cid
3289443
pdb|3HFJ|B Chain B, Bacillus Anthracis Nicotinate Mononucleotide
Adenylytransferase (Nadd) In Complex With Inhibitor Cid
3289443
pdb|3MLA|A Chain A, Banadd In Complex With Inhibitor 1_02
pdb|3MLA|B Chain B, Banadd In Complex With Inhibitor 1_02
pdb|3MLB|A Chain A, Banadd In Complex With Inhibitor 1_02_1
pdb|3MLB|B Chain B, Banadd In Complex With Inhibitor 1_02_1
pdb|3MMX|A Chain A, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|B Chain B, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|C Chain C, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|D Chain D, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|E Chain E, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|F Chain F, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|G Chain G, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
pdb|3MMX|H Chain H, Bacillus Anthracis Nadd (Banadd) In Complex With Compound
1_02_3
Length = 191
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 2 SRLYQVEYAMEAISHAGTCLGILAQDG-------ILLAAEKRLNQDFSFL------PHMS 48
SRL +E A EA H CL L++ G +L +K + F F+ ++
Sbjct: 57 SRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLP 116
Query: 49 RLYQVEYAMEAISHAGTC 66
+ Y +E ++ ++ G
Sbjct: 117 KWYNIEALLDLVTFVGVA 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,864,122
Number of Sequences: 62578
Number of extensions: 96730
Number of successful extensions: 395
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 130
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)