BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6595
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18053|PSA4_DROME Proteasome subunit alpha type-4 OS=Drosophila melanogaster
GN=Pros29 PE=1 SV=2
Length = 264
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAISHAGTCLGILA+DGILLAAE R+TNKLLD S
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECRSTNKLLDSAIPS 62
Query: 95 EKIYKLHDSL 104
EKIY+L+D++
Sbjct: 63 EKIYRLNDNM 72
>sp|Q9R1P0|PSA4_MOUSE Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1
Length = 261
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 53/70 (75%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI HAGTCLGILA DG+LLAAE+RN +KLLDE S
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 62
Query: 95 EKIYKLHDSL 104
EKIYKL++ +
Sbjct: 63 EKIYKLNEDM 72
>sp|P21670|PSA4_RAT Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1
SV=1
Length = 261
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 53/70 (75%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI HAGTCLGILA DG+LLAAE+RN +KLLDE S
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 62
Query: 95 EKIYKLHDSL 104
EKIYKL++ +
Sbjct: 63 EKIYKLNEDM 72
>sp|P25789|PSA4_HUMAN Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1
Length = 261
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 53/70 (75%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI HAGTCLGILA DG+LLAAE+RN +KLLDE S
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 62
Query: 95 EKIYKLHDSL 104
EKIYKL++ +
Sbjct: 63 EKIYKLNEDM 72
>sp|Q3ZCK9|PSA4_BOVIN Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1
Length = 261
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 53/70 (75%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI HAGTCLGILA DG+LLAAE+RN +KLLDE S
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 62
Query: 95 EKIYKLHDSL 104
EKIYKL++ +
Sbjct: 63 EKIYKLNEDM 72
>sp|Q4R932|PSA4_MACFA Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4
PE=2 SV=1
Length = 261
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 53/70 (75%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI HAGTCLGILA DG+LLAAE+RN +KLLDE S
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 62
Query: 95 EKIYKLHDSL 104
EKIYKL++ +
Sbjct: 63 EKIYKLNEDM 72
>sp|Q9N599|PSA4_CAEEL Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3
PE=3 SV=2
Length = 250
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 55/71 (77%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAISHAGTCLGIL+ +GI++AAE++N +KLLD+ +
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMT 62
Query: 95 EKIYKLHDSLN 105
EK+Y+L D+++
Sbjct: 63 EKVYRLSDNIS 73
>sp|P23638|PSA3_YEAST Proteasome subunit alpha type-3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE9 PE=1 SV=1
Length = 258
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 55/72 (76%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYA+E+ISHAGT +GI+A DGI+LAAE++ T+ LL++ T++
Sbjct: 4 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTST 63
Query: 95 EKIYKLHDSLNI 106
EK+YKL+D + +
Sbjct: 64 EKLYKLNDKIAV 75
>sp|Q09682|PSA3_SCHPO Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC13C5.01c PE=3
SV=1
Length = 248
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA+EAI+HAG LGI+A+DGI+LAAEK+ T+KLL++ ++EK+Y + D
Sbjct: 12 FSPE-GRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGD 70
Query: 103 SL 104
++
Sbjct: 71 NM 72
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 14/85 (16%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RLYQVEYA+EAI+HAG LGI+A+DGI+LAAEK++ S+L + E + E + H
Sbjct: 17 RLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKV---------TSKLLEQEESAEKLYH 67
Query: 63 AGTCL-----GILAQDGILLAAEKR 82
G + G+ A IL+ +R
Sbjct: 68 IGDNMLCAVAGLTADANILINYARR 92
>sp|P34119|PSA4_DICDI Proteasome subunit alpha type-4 OS=Dictyostelium discoideum
GN=psmA4 PE=2 SV=1
Length = 250
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTT- 93
+R +Q + R+YQVEYAM AI HAG +GILA+DGI+LAAEK+ T KLLD T+
Sbjct: 3 RRYDQRTTIFSPEGRVYQVEYAMTAIRHAGATVGILAKDGIVLAAEKKTTAKLLDSSTSI 62
Query: 94 SEKIYKLHD 102
SEK++K+ +
Sbjct: 63 SEKMFKIDE 71
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
R+YQVEYAM AI HAG +GILA+DGI+LAAEK+
Sbjct: 17 RVYQVEYAMTAIRHAGATVGILAKDGIVLAAEKK 50
>sp|P52427|PSA4_SPIOL Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2
SV=1
Length = 250
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI +AG+ +GILA+DG++L EK+ T+KLL T++
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTSTST 62
Query: 95 EKIYKLHD 102
EK+YK+ D
Sbjct: 63 EKMYKIDD 70
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRL 37
RLYQVEYAMEAI +AG+ +GILA+DG++L EK++
Sbjct: 17 RLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKV 51
>sp|O82530|PSA4_PETHY Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2
SV=1
Length = 249
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYAMEAI +AG+ +GI ++DG++L EK+ T+KLL T+SEK+YK+ D
Sbjct: 12 FSPE-GRLYQVEYAMEAIGNAGSAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDD 70
>sp|O81148|PSA4_ARATH Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1
PE=1 SV=1
Length = 250
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 49/68 (72%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI +AG+ +GIL++DG++L EK+ T+KLL T++
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSA 62
Query: 95 EKIYKLHD 102
EK+YK+ D
Sbjct: 63 EKMYKIDD 70
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 31/36 (86%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLN 38
RLYQVEYAMEAI +AG+ +GIL++DG++L EK++
Sbjct: 17 RLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVT 52
>sp|P0C1G8|PSA4A_ORYSJ Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica
GN=PAC1 PE=2 SV=1
Length = 250
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI +AG+ LG+LA DG++L EK+ T+KLL ++
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSA 62
Query: 95 EKIYKLHDSL 104
EK+YK+ L
Sbjct: 63 EKMYKIDSHL 72
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RLYQVEYAMEAI +AG+ LG+LA DG++L EK++ S L SR + Y ++ SH
Sbjct: 17 RLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVT---SKLLQTSRSAEKMYKID--SH 71
Query: 63 -AGTCLGILAQDGILLAAEKRNTNKL 87
A GI++ ILL NT +L
Sbjct: 72 LACAVAGIMSDANILL-----NTARL 92
>sp|A2Y9X7|PSA4A_ORYSI Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica
GN=OsI_021120 PE=1 SV=2
Length = 250
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI +AG+ LG+LA DG++L EK+ T+KLL ++
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSA 62
Query: 95 EKIYKLHDSL 104
EK+YK+ L
Sbjct: 63 EKMYKIDSHL 72
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RLYQVEYAMEAI +AG+ LG+LA DG++L EK++ S L SR + Y ++ SH
Sbjct: 17 RLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVT---SKLLQTSRSAEKMYKID--SH 71
Query: 63 -AGTCLGILAQDGILLAAEKRNTNKL 87
A GI++ ILL NT +L
Sbjct: 72 LACAVAGIMSDANILL-----NTARL 92
>sp|Q5VRG3|PSA4B_ORYSJ Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica
GN=Os06g0167600 PE=2 SV=1
Length = 250
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI +AG+ LG+LA DG++L EK+ T+KLL ++
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSA 62
Query: 95 EKIYKLHDSL 104
EK+YK+ L
Sbjct: 63 EKMYKIDSHL 72
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RLYQVEYAMEAI +AG+ LG+LA DG++L EK++ S L SR + Y ++ SH
Sbjct: 17 RLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVT---SKLLQTSRSAEKMYKID--SH 71
Query: 63 -AGTCLGILAQDGILLAAEKRNTNKL 87
A GI++ ILL NT +L
Sbjct: 72 LACAVAGIMSDANILL-----NTARL 92
>sp|P0C8Y9|PSA4B_ORYSI Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica
GN=OsI_021067 PE=1 SV=1
Length = 250
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTS 94
+R + + RLYQVEYAMEAI +AG+ LG+LA DG++L EK+ T+KLL ++
Sbjct: 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSA 62
Query: 95 EKIYKLHDSL 104
EK+YK+ L
Sbjct: 63 EKMYKIDSHL 72
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RLYQVEYAMEAI +AG+ LG+LA DG++L EK++ S L SR + Y ++ SH
Sbjct: 17 RLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVT---SKLLQTSRSAEKMYKID--SH 71
Query: 63 -AGTCLGILAQDGILLAAEKRNTNKL 87
A GI++ ILL NT +L
Sbjct: 72 LACAVAGIMSDANILL-----NTARL 92
>sp|Q9VA12|PSA4L_DROME Proteasome subunit alpha type-4-like OS=Drosophila melanogaster
GN=Prosalpha3T PE=2 SV=1
Length = 251
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYAMEA S +GTC+G+LA++G+LLA E R+ +KL+D +I L++
Sbjct: 12 FSPE-GRLYQVEYAMEAASQSGTCVGLLAKNGVLLATE-RSVDKLMDTSIPVPRISWLNE 69
Query: 103 SL 104
++
Sbjct: 70 NI 71
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 40/51 (78%), Gaps = 3/51 (5%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQ--DFSF-LPHMSRL 50
RLYQVEYAMEA S +GTC+G+LA++G+LLA E+ +++ D S +P +S L
Sbjct: 17 RLYQVEYAMEAASQSGTCVGLLAKNGVLLATERSVDKLMDTSIPVPRISWL 67
>sp|Q18K08|PSA_HALWD Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM
16790) GN=psmA PE=3 SV=1
Length = 250
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ +GI DGI+LAA+KR+ + L+ E T+ EKI+K D
Sbjct: 17 FSPD-GRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLM-EPTSVEKIHKTDD 74
Query: 103 SLNI 106
+ I
Sbjct: 75 HVGI 78
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RLYQVEYA EA+ +GI DGI+LAA+KR
Sbjct: 22 RLYQVEYAREAVKRGTASVGIRTPDGIVLAADKR 55
>sp|A7I9C7|PSA_METB6 Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8)
GN=psmA PE=3 SV=1
Length = 240
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ T +GI A DG++L +KR ++KLL E ++ EKI+K+ +
Sbjct: 16 FSPD-GRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLL-ESSSIEKIFKIDE 73
Query: 103 SLNI 106
+ +
Sbjct: 74 HIGV 77
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RLYQVEYA EA+ T +GI A DG++L +KR++ + ++++++
Sbjct: 21 RLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKID 72
>sp|Q6M0L9|PSA_METMP Proteasome subunit alpha OS=Methanococcus maripaludis (strain S2 /
LL) GN=psmA PE=3 SV=1
Length = 259
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ T +GI +DG++LA ++R T+KL+D + EKI+++ D
Sbjct: 17 FSPE-GRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSI-EKIFQIDD 74
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RLYQVEYA EA+ T +GI +DG++LA ++R+ + + +++Q++
Sbjct: 22 RLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQID 73
>sp|A4FZT6|PSA_METM5 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=psmA PE=3 SV=1
Length = 259
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ T +GI +DG++LA ++R T+KL+D + EKI+++ D
Sbjct: 17 FSPE-GRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSI-EKIFQIDD 74
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RLYQVEYA EA+ T +GI +DG++LA ++R+ + + +++Q++
Sbjct: 22 RLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQID 73
>sp|A6VIP0|PSA_METM7 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=psmA PE=3 SV=1
Length = 259
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ T +GI +DG++LA ++R T+KL+D ++ EKI+++ D
Sbjct: 17 FSPE-GRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDV-SSIEKIFQIDD 74
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RLYQVEYA EA+ T +GI +DG++LA ++R+ + + +++Q++
Sbjct: 22 RLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQID 73
>sp|A6URN9|PSA_METVS Proteasome subunit alpha OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1
Length = 259
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ T +GI +DG++LA ++R T+KL+D ++ EKI+++ D
Sbjct: 17 FSPE-GRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLID-VSSIEKIFQIDD 74
Query: 103 SL 104
+
Sbjct: 75 HI 76
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RLYQVEYA EA+ T +GI +DG++LA ++R+ + + +++Q++
Sbjct: 22 RLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQID 73
>sp|A9A846|PSA_METM6 Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=psmA PE=3 SV=1
Length = 259
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ T +GI DG++LA ++R T+KL+D + EKI+++ D
Sbjct: 17 FSPE-GRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSI-EKIFQIDD 74
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RLYQVEYA EA+ T +GI DG++LA ++R+ + + +++Q++
Sbjct: 22 RLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQID 73
>sp|C6A459|PSA_THESM Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=psmA PE=3 SV=1
Length = 260
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QV+YA EA+ T +G+ +DG++LA EKR T+KL+ E + EKI+++ D
Sbjct: 17 FSPD-GRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLI-EPESYEKIFQIDD 74
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QV+YA EA+ T +G+ +DG++LA EKR+ +++Q++ + A S
Sbjct: 22 RLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASS 81
Query: 63 AGTCLGILAQDGILL 77
GI+A +L+
Sbjct: 82 -----GIIADARVLV 91
>sp|Q9V2V6|PSA1_HALVD Proteasome subunit alpha 1 OS=Haloferax volcanii (strain ATCC 29605
/ DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM
B-1768 / DS2) GN=psmA1 PE=1 SV=2
Length = 252
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ +G+ +G++LAA+KR+ + L+ E T+ EKI+K D
Sbjct: 17 FSPD-GRLYQVEYAREAVKRGTASIGVRTPEGVVLAADKRSRSPLM-EPTSVEKIHKADD 74
Query: 103 SLNIIT 108
+ I +
Sbjct: 75 HIGIAS 80
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RLYQVEYA EA+ +G+ +G++LAA+KR
Sbjct: 22 RLYQVEYAREAVKRGTASIGVRTPEGVVLAADKR 55
>sp|A5UJS2|PSA_METS3 Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1
Length = 250
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T +GI +GI+LA +KR T+ L+ E T+ EKI+K+ +
Sbjct: 16 FSPD-GRLFQVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLV-EATSIEKIFKIDE 73
Query: 103 SLNIIT 108
+ T
Sbjct: 74 HIGAAT 79
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA EA+ T +GI +GI+LA +KR + + ++++++ H
Sbjct: 21 RLFQVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKID------EH 74
Query: 63 AGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKI 97
G L D L E+ +++ T SE I
Sbjct: 75 IGAATSGLVADARAL-VERARVEAQINKITYSEPI 108
>sp|O29760|PSA_ARCFU Proteasome subunit alpha OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmA PE=1 SV=1
Length = 246
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T +GI ++G++L A+KR +KLL E T EKIYK+ +
Sbjct: 15 FSPD-GRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLL-EADTIEKIYKIDE 72
Query: 103 SL 104
+
Sbjct: 73 HI 74
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RL+QVEYA EA+ T +GI ++G++L A+KR+ + ++Y+++
Sbjct: 20 RLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKID 71
>sp|B8GEZ3|PSA_METPE Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1
Length = 241
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ T +GI DGI+L +KR +KLL E ++ EKI+K+ +
Sbjct: 16 FSPD-GRLYQVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNSKLL-EPSSIEKIFKIDN 73
Query: 103 SLNI 106
+ +
Sbjct: 74 HIGV 77
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RLYQVEYA EA+ T +GI DGI+L +KR+N + ++++++
Sbjct: 21 RLYQVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNSKLLEPSSIEKIFKID 72
>sp|Q95008|PSA5_CAEEL Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5
PE=1 SV=1
Length = 248
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLH 101
+F P RL+QVEYA+EA+ T +GI +G+LLAAEKR+T+KL+ EKI K+
Sbjct: 14 TFSPE-GRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAI-EKISKVD 71
Query: 102 DSLNI 106
+ +
Sbjct: 72 QHIGV 76
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA+EA+ T +GI +G+LLAAEKR S+L V A+E IS
Sbjct: 20 RLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKR---------STSKLM-VNDAIEKISK 69
Query: 63 AGTCLGI 69
+G+
Sbjct: 70 VDQHIGV 76
>sp|Q469M6|PSA_METBF Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmA PE=3 SV=1
Length = 249
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T +GI A DG++L +KR T++L+ E + EKI+++ D
Sbjct: 16 FSPD-GRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLV-EAESIEKIFQIDD 73
Query: 103 SLNIIT 108
+ T
Sbjct: 74 HIGAAT 79
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RL+QVEYA EA+ T +GI A DG++L +KR+ + +++Q++
Sbjct: 21 RLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQID 72
>sp|Q9V122|PSA_PYRAB Proteasome subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmA PE=3 SV=1
Length = 260
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QV YA EA+ T +G+ +DG++LA EKR T++L+ E + EKI+++ D
Sbjct: 17 FSPD-GRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLI-EPESYEKIFQIDD 74
Query: 103 SL 104
+
Sbjct: 75 HI 76
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QV YA EA+ T +G+ +DG++LA EKR+ +++Q++ + A S
Sbjct: 22 RLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASS 81
Query: 63 AGTCLGILAQDGILL 77
GI+A +L+
Sbjct: 82 -----GIIADARVLV 91
>sp|Q59565|PSA_METTE Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3
SV=1
Length = 247
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T +GI A DG++L +KR T++L+ E + EKI+++ D
Sbjct: 14 FSPD-GRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLV-EAESIEKIFQIDD 71
Query: 103 SLNIIT 108
+ T
Sbjct: 72 HIGAAT 77
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RL+QVEYA EA+ T +GI A DG++L +KR+ + +++Q++
Sbjct: 19 RLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQID 70
>sp|Q5JIU9|PSA_PYRKO Proteasome subunit alpha OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmA PE=3 SV=1
Length = 260
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QV YA EA+ T +G+ +DG++LA EKR T+KL+ E ++ EKI+ + D
Sbjct: 17 FSPD-GRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLI-EPSSYEKIFLIDD 74
Query: 103 SL 104
+
Sbjct: 75 HI 76
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLN 38
RL+QV YA EA+ T +G+ +DG++LA EKR+
Sbjct: 22 RLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRIT 57
>sp|O24733|PSA_THEK1 Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA
PE=3 SV=1
Length = 260
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QV YA EA+ T +G+ +DG++LA EKR T+KL+ E ++ EKI+ + D
Sbjct: 17 FSPD-GRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLI-EPSSYEKIFLIDD 74
Query: 103 SL 104
+
Sbjct: 75 HI 76
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLN 38
RL+QV YA EA+ T +G+ +DG++LA EKR+
Sbjct: 22 RLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRIT 57
>sp|B6YSH9|PSA_THEON Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1)
GN=psmA PE=3 SV=1
Length = 260
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QV YA EA+ T +G+ ++G++LA EKR T+KL+ E ++ EKI+++ D
Sbjct: 17 FSPD-GRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLI-EPSSYEKIFQIDD 74
Query: 103 SL 104
+
Sbjct: 75 HI 76
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QV YA EA+ T +G+ ++G++LA EKR+ +++Q++ H
Sbjct: 22 RLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQID------DH 75
Query: 63 -AGTCLGILAQDGILL 77
A GI+A +L+
Sbjct: 76 IAAAPSGIIADARVLV 91
>sp|Q8PTU1|PSA_METMA Proteasome subunit alpha OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmA PE=3 SV=1
Length = 249
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T +GI A DG++L +KR T++L+ E + EKI+++ D
Sbjct: 16 FSPD-GRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLV-EAESIEKIFQIDD 73
Query: 103 SLNIIT 108
+ T
Sbjct: 74 HIGAAT 79
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 2 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RL+QVEYA EA+ T +GI A DG++L +KR+ + +++Q++
Sbjct: 20 GRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQID 72
>sp|Q42134|PSA5B_ARATH Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2
PE=1 SV=2
Length = 237
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLH 101
+F P RL+QVEYA+EAI T +G+ ++G++LA EKR T+ LL E ++ EKI ++
Sbjct: 14 TFSPE-GRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLL-EPSSVEKIMEID 71
Query: 102 D 102
D
Sbjct: 72 D 72
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA+EAI T +G+ ++G++LA EKR+ + VE ME H
Sbjct: 20 RLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSP------LLEPSSVEKIMEIDDH 73
Query: 63 AGTCLGILAQDGILLAAEKR 82
G + L D L R
Sbjct: 74 IGCAMSGLIADARTLVEHAR 93
>sp|O81149|PSA5A_ARATH Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1
PE=1 SV=1
Length = 237
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLH 101
+F P RL+QVEYA+EAI T +G+ ++G++LA EKR T+ LL E ++ EKI ++
Sbjct: 14 TFSPE-GRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLL-EPSSVEKIMEID 71
Query: 102 D 102
D
Sbjct: 72 D 72
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA+EAI T +G+ ++G++LA EKR+ + VE ME H
Sbjct: 20 RLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSP------LLEPSSVEKIMEIDDH 73
Query: 63 AGTCLGILAQDGILLAAEKR 82
G + L D L R
Sbjct: 74 IGCAMSGLIADARTLVEHAR 93
>sp|Q60177|PSA_METJA Proteasome subunit alpha OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmA PE=1 SV=1
Length = 261
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ T +GI +DG++LA ++R T+KL+ + + EKI+++ D
Sbjct: 16 FSPE-GRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLV-KIRSIEKIFQIDD 73
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RLYQVEYA EA+ T +GI +DG++LA ++R+ + + +++Q++
Sbjct: 21 RLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQID 72
>sp|O26782|PSA_METTH Proteasome subunit alpha OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=psmA PE=3 SV=1
Length = 248
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T LG+ +++GI+L +KR T+KL+ E + EKI+++ +
Sbjct: 16 FSPD-GRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLV-EPKSIEKIFQIDE 73
Query: 103 SLNIIT 108
+ T
Sbjct: 74 HIGAAT 79
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RL+QVEYA EA+ T LG+ +++GI+L +KR + +++Q++
Sbjct: 21 RLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQID 72
>sp|Q9LSU1|PSA5_ORYSJ Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica
GN=PAE1 PE=2 SV=1
Length = 237
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLH 101
+F P RL+QVEYA+EAI T +G+ +DG++LA EKR T+ LL E ++ EKI ++
Sbjct: 14 TFSPE-GRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLL-EPSSVEKIMEID 71
Query: 102 D 102
+
Sbjct: 72 E 72
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA+EAI T +G+ +DG++LA EKR+ + VE ME H
Sbjct: 20 RLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSP------LLEPSSVEKIMEIDEH 73
Query: 63 AGTCLGILAQDGILLAAEKR 82
G + L D L R
Sbjct: 74 IGCAMSGLIADARTLVEHAR 93
>sp|Q3IPJ1|PSA_NATPD Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160
/ ATCC 35678) GN=psmA PE=3 SV=1
Length = 255
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ +GI +DG++L +KR + L+ E T+ EKI+K D
Sbjct: 17 FSPD-GRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLM-ERTSVEKIHKADD 74
Query: 103 SLNI 106
+ I
Sbjct: 75 HIGI 78
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RLYQVEYA EA+ +GI +DG++L +KR+ P M R ++E I
Sbjct: 22 RLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRS-----PLMERT-----SVEKIHK 71
Query: 63 AGTCLGI 69
A +GI
Sbjct: 72 ADDHIGI 78
>sp|Q8TYB7|PSA_METKA Proteasome subunit alpha OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=psmA PE=3 SV=1
Length = 246
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T LGI ++G++L +KR T+KL+ E + EK+Y++
Sbjct: 17 FSPD-GRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLI-EPESIEKVYQIDT 74
Query: 103 SLNIIT 108
+ T
Sbjct: 75 HIGAAT 80
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA EA+ T LGI ++G++L +KR+ + ++YQ++ +H
Sbjct: 22 RLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQID------TH 75
Query: 63 AGTCLGILAQDGILLAAEKR 82
G L D +L R
Sbjct: 76 IGAATAGLVADARVLVERAR 95
>sp|Q5V2X8|PSA1_HALMA Proteasome subunit alpha 1 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=psmA1 PE=3
SV=1
Length = 260
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ +G+ DG++LA +KR + L+ E ++ EKI+K D
Sbjct: 17 FSPD-GRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLM-ERSSVEKIHKADD 74
Query: 103 SLNIIT 108
+ I +
Sbjct: 75 HIGIAS 80
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 2 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAIS 61
RLYQVEYA EA+ +G+ DG++LA +KR+ P M R VE +A
Sbjct: 21 GRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRS-----PLMER-SSVEKIHKADD 74
Query: 62 HAG 64
H G
Sbjct: 75 HIG 77
>sp|Q8TPX5|PSA_METAC Proteasome subunit alpha OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmA PE=3 SV=1
Length = 247
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEYA EA+ T +GI A DG++L +KR T++L+ E + EKI+++ +
Sbjct: 14 FSPD-GRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLV-EAESIEKIFQIDE 71
Query: 103 SLNIIT 108
+ T
Sbjct: 72 HIGAAT 77
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RL+QVEYA EA+ T +GI A DG++L +KR+ + +++Q++
Sbjct: 19 RLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQID 70
>sp|Q9LSU0|PSA3_ORYSJ Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica
GN=PAG1 PE=2 SV=1
Length = 249
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 42 SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLH 101
+F P R++QVEYA +A+ ++GT +GI +DGI+L EK T+K++ EG ++ +I+ +H
Sbjct: 14 TFSPD-GRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEG-SNRRIHSVH 71
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
R++QVEYA +A+ ++GT +GI +DGI+L EK + R++ V + H
Sbjct: 20 RVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHW------H 73
Query: 63 AGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIY 98
+G + LA DG ++ ++ E + EK+Y
Sbjct: 74 SGLAVAGLAADG------RQIVSRAKSEAASYEKVY 103
>sp|A3CW55|PSA_METMJ Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1
Length = 240
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RLYQVEYA EA+ T +GI +G++L +KR T++LL E + EKI+K+
Sbjct: 16 FSPD-GRLYQVEYAREAVKRGTTAVGIKCSEGVVLIVDKRVTSRLL-EPVSIEKIFKIDA 73
Query: 103 SLNI 106
+ +
Sbjct: 74 HIGV 77
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54
RLYQVEYA EA+ T +GI +G++L +KR+ + ++++++
Sbjct: 21 RLYQVEYAREAVKRGTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKID 72
>sp|C5A2C2|PSA_THEGJ Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1
Length = 260
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QV YA EA+ T +G+ + G++LA EKR T++L+ E ++ EKI+++ D
Sbjct: 17 FSPD-GRLFQVNYAREAVKRGATAVGVKWKGGVVLAVEKRITSRLI-EPSSYEKIFQIDD 74
Query: 103 SL 104
+
Sbjct: 75 HI 76
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QV YA EA+ T +G+ + G++LA EKR+ +++Q++ H
Sbjct: 22 RLFQVNYAREAVKRGATAVGVKWKGGVVLAVEKRITSRLIEPSSYEKIFQID------DH 75
Query: 63 -AGTCLGILAQDGILL 77
A GI+A +L+
Sbjct: 76 IAAAPSGIIADARVLV 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,594,112
Number of Sequences: 539616
Number of extensions: 1274111
Number of successful extensions: 3822
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3383
Number of HSP's gapped (non-prelim): 453
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)