Query psy6595
Match_columns 108
No_of_seqs 122 out of 1141
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 22:08:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0184|consensus 99.9 1.2E-23 2.6E-28 149.3 5.8 78 2-85 19-96 (254)
2 KOG0176|consensus 99.8 5.8E-21 1.2E-25 133.9 3.8 76 2-83 19-94 (241)
3 KOG0184|consensus 99.8 2.3E-20 5E-25 132.6 4.0 72 36-108 7-78 (254)
4 KOG0178|consensus 99.8 2.4E-20 5.2E-25 131.8 3.3 78 2-85 16-94 (249)
5 KOG0176|consensus 99.8 4.2E-20 9E-25 129.6 3.2 75 33-108 4-78 (241)
6 cd03751 proteasome_alpha_type_ 99.8 1.1E-19 2.3E-24 129.8 5.2 79 1-85 14-92 (212)
7 cd03750 proteasome_alpha_type_ 99.8 1.3E-19 2.7E-24 130.4 5.5 79 1-85 11-89 (227)
8 cd03752 proteasome_alpha_type_ 99.8 1.7E-19 3.7E-24 128.5 5.1 79 1-85 13-92 (213)
9 PTZ00246 proteasome subunit al 99.8 2.2E-19 4.7E-24 131.0 5.3 77 1-83 15-92 (253)
10 KOG0183|consensus 99.8 6E-20 1.3E-24 130.0 2.2 95 2-104 15-112 (249)
11 cd03754 proteasome_alpha_type_ 99.8 2.7E-19 5.9E-24 127.9 5.3 81 1-87 12-93 (215)
12 cd03755 proteasome_alpha_type_ 99.8 2.9E-19 6.3E-24 126.9 5.2 80 1-86 11-90 (207)
13 cd03749 proteasome_alpha_type_ 99.8 6.3E-19 1.4E-23 125.6 5.2 79 1-87 11-89 (211)
14 KOG0863|consensus 99.8 3.8E-19 8.3E-24 127.0 3.8 75 2-84 17-91 (264)
15 PTZ00246 proteasome subunit al 99.7 1.2E-18 2.5E-23 127.2 4.3 75 34-108 2-76 (253)
16 cd03753 proteasome_alpha_type_ 99.7 2.1E-18 4.6E-23 122.8 4.8 80 1-86 11-90 (213)
17 cd03750 proteasome_alpha_type_ 99.7 2E-18 4.4E-23 124.1 4.7 71 37-108 1-71 (227)
18 cd03752 proteasome_alpha_type_ 99.7 2.7E-18 5.9E-23 122.3 4.9 72 36-107 2-73 (213)
19 PRK03996 proteasome subunit al 99.7 2.4E-18 5.2E-23 124.6 4.6 78 1-84 20-97 (241)
20 KOG0178|consensus 99.7 9.2E-19 2E-23 123.8 2.3 74 34-107 2-75 (249)
21 cd03756 proteasome_alpha_arche 99.7 3.1E-18 6.7E-23 121.8 4.7 78 1-84 12-89 (211)
22 cd03751 proteasome_alpha_type_ 99.7 3E-18 6.6E-23 122.3 4.4 72 35-107 2-73 (212)
23 TIGR03633 arc_protsome_A prote 99.7 4.6E-18 1E-22 121.9 5.2 77 1-83 13-89 (224)
24 KOG0183|consensus 99.7 3.4E-18 7.5E-23 121.1 3.8 73 35-108 2-74 (249)
25 cd03755 proteasome_alpha_type_ 99.7 9.8E-18 2.1E-22 119.0 4.9 71 37-108 1-71 (207)
26 cd03754 proteasome_alpha_type_ 99.7 1.5E-17 3.2E-22 118.9 4.9 71 36-107 1-72 (215)
27 cd01911 proteasome_alpha prote 99.7 1.7E-17 3.7E-22 117.8 4.9 77 1-83 11-87 (209)
28 KOG0181|consensus 99.7 6.5E-18 1.4E-22 118.4 1.8 73 34-107 3-75 (233)
29 cd03756 proteasome_alpha_arche 99.7 4.3E-17 9.4E-22 115.9 4.8 72 36-108 1-72 (211)
30 cd03749 proteasome_alpha_type_ 99.7 4.2E-17 9.1E-22 116.2 4.6 68 37-107 1-68 (211)
31 KOG0182|consensus 99.7 3.9E-17 8.4E-22 115.6 4.2 74 34-108 6-80 (246)
32 KOG0181|consensus 99.7 4E-17 8.7E-22 114.4 4.0 79 1-85 16-94 (233)
33 TIGR03633 arc_protsome_A prote 99.7 6.2E-17 1.3E-21 116.1 5.0 71 36-107 2-72 (224)
34 cd03753 proteasome_alpha_type_ 99.7 6.3E-17 1.4E-21 115.2 4.9 71 37-108 1-71 (213)
35 PRK03996 proteasome subunit al 99.7 8.1E-17 1.8E-21 116.6 4.7 73 34-107 7-79 (241)
36 COG0638 PRE1 20S proteasome, a 99.6 1.3E-16 2.7E-21 115.8 4.8 77 2-84 14-92 (236)
37 cd01911 proteasome_alpha prote 99.6 2.8E-16 6E-21 111.6 5.1 71 37-108 1-71 (209)
38 KOG0182|consensus 99.6 1.7E-16 3.7E-21 112.4 3.4 77 2-84 20-97 (246)
39 KOG0863|consensus 99.6 2.4E-16 5.1E-21 112.8 2.3 72 34-108 3-74 (264)
40 COG0638 PRE1 20S proteasome, a 99.5 8.2E-15 1.8E-19 106.3 4.5 73 36-108 2-75 (236)
41 TIGR03691 20S_bact_alpha prote 99.4 1.5E-13 3.3E-18 99.3 3.7 68 7-87 17-84 (228)
42 PF10584 Proteasome_A_N: Prote 99.1 3.2E-11 6.9E-16 57.4 1.2 23 37-59 1-23 (23)
43 cd03759 proteasome_beta_type_3 98.8 1.6E-09 3.6E-14 76.2 2.1 65 16-86 2-67 (195)
44 TIGR03691 20S_bact_alpha prote 98.8 5.3E-09 1.1E-13 75.7 4.2 48 53-108 17-64 (228)
45 PTZ00488 Proteasome subunit be 98.8 3.6E-09 7.8E-14 77.3 2.3 69 13-87 35-104 (247)
46 cd03757 proteasome_beta_type_1 98.8 3.5E-09 7.6E-14 75.5 2.0 67 14-86 5-72 (212)
47 TIGR03690 20S_bact_beta protea 98.7 3.8E-09 8.2E-14 75.7 2.1 63 16-84 1-64 (219)
48 PF10584 Proteasome_A_N: Prote 98.7 7.2E-09 1.6E-13 49.3 1.8 13 1-13 11-23 (23)
49 cd03760 proteasome_beta_type_4 98.7 8.7E-09 1.9E-13 72.5 3.0 62 17-84 2-64 (197)
50 PF00227 Proteasome: Proteasom 98.7 9.8E-09 2.1E-13 71.1 2.6 65 14-84 1-67 (190)
51 cd03761 proteasome_beta_type_5 98.7 1.1E-08 2.3E-13 71.6 2.0 64 18-87 1-65 (188)
52 TIGR03634 arc_protsome_B prote 98.6 2.9E-08 6.2E-13 69.0 1.9 62 17-84 1-63 (185)
53 cd03758 proteasome_beta_type_2 98.5 5.9E-08 1.3E-12 68.2 2.3 61 18-84 2-63 (193)
54 cd03765 proteasome_beta_bacter 98.4 9.7E-08 2.1E-12 69.5 2.2 65 19-88 2-69 (236)
55 cd03762 proteasome_beta_type_6 98.4 1.3E-07 2.8E-12 66.0 2.4 63 18-86 1-64 (188)
56 cd03763 proteasome_beta_type_7 98.4 1.2E-07 2.5E-12 66.4 1.9 62 18-85 1-63 (189)
57 cd01906 proteasome_protease_Hs 98.4 2.3E-07 4.9E-12 63.8 3.1 61 18-84 1-62 (182)
58 cd01912 proteasome_beta protea 98.4 1.8E-07 3.8E-12 65.1 2.1 60 18-83 1-61 (189)
59 cd03764 proteasome_beta_archea 98.3 3.6E-07 7.9E-12 63.7 2.0 60 18-83 1-61 (188)
60 cd03759 proteasome_beta_type_3 98.2 2.1E-06 4.6E-11 60.4 3.7 47 62-108 2-48 (195)
61 PRK05456 ATP-dependent proteas 98.0 2.8E-06 6.2E-11 59.1 2.4 66 17-88 1-68 (172)
62 cd03757 proteasome_beta_type_1 98.0 5.2E-06 1.1E-10 59.2 3.6 48 61-108 6-53 (212)
63 cd03760 proteasome_beta_type_4 98.0 6.4E-06 1.4E-10 58.0 3.7 45 63-108 2-47 (197)
64 PF00227 Proteasome: Proteasom 98.0 7.4E-06 1.6E-10 56.6 3.4 47 60-107 1-49 (190)
65 PTZ00488 Proteasome subunit be 98.0 8.7E-06 1.9E-10 59.6 3.7 47 61-108 37-84 (247)
66 TIGR03690 20S_bact_beta protea 97.9 9.4E-06 2E-10 58.1 3.7 46 62-108 1-47 (219)
67 cd03761 proteasome_beta_type_5 97.9 1.6E-05 3.4E-10 55.6 3.6 43 65-108 2-45 (188)
68 cd01913 protease_HslV Protease 97.9 8.1E-06 1.8E-10 56.9 2.1 64 18-87 1-66 (171)
69 TIGR03692 ATP_dep_HslV ATP-dep 97.8 1.2E-05 2.6E-10 56.0 1.9 65 18-88 1-67 (171)
70 TIGR03634 arc_protsome_B prote 97.8 3.2E-05 7E-10 53.7 3.7 45 63-108 1-46 (185)
71 cd03758 proteasome_beta_type_2 97.7 3.4E-05 7.4E-10 54.2 3.6 44 64-108 2-46 (193)
72 cd03765 proteasome_beta_bacter 97.7 4.1E-05 8.8E-10 55.8 3.9 43 65-108 2-48 (236)
73 cd03763 proteasome_beta_type_7 97.7 5.9E-05 1.3E-09 52.6 4.0 44 65-108 2-45 (189)
74 cd01912 proteasome_beta protea 97.6 6.7E-05 1.5E-09 52.0 3.8 44 64-108 1-45 (189)
75 cd03762 proteasome_beta_type_6 97.6 7.2E-05 1.6E-09 52.1 3.8 44 64-108 1-45 (188)
76 cd01901 Ntn_hydrolase The Ntn 97.6 6.2E-05 1.4E-09 49.7 3.0 62 18-85 1-63 (164)
77 cd03764 proteasome_beta_archea 97.5 0.0001 2.2E-09 51.3 3.7 44 64-108 1-45 (188)
78 cd01906 proteasome_protease_Hs 97.5 0.00012 2.5E-09 50.3 3.6 44 64-108 1-45 (182)
79 PRK05456 ATP-dependent proteas 97.2 0.00038 8.3E-09 48.5 3.7 45 63-107 1-46 (172)
80 cd01913 protease_HslV Protease 97.0 0.00082 1.8E-08 46.9 3.6 43 65-107 2-45 (171)
81 TIGR03692 ATP_dep_HslV ATP-dep 97.0 0.0011 2.4E-08 46.2 3.7 44 65-108 2-46 (171)
82 KOG0180|consensus 96.7 0.0008 1.7E-08 47.0 1.6 69 15-89 6-75 (204)
83 KOG0179|consensus 96.5 0.0016 3.4E-08 46.8 1.9 63 14-82 26-89 (235)
84 cd01901 Ntn_hydrolase The Ntn 95.7 0.016 3.5E-07 38.0 3.6 44 64-107 1-44 (164)
85 KOG0179|consensus 95.3 0.024 5.2E-07 40.8 3.6 47 61-107 27-73 (235)
86 KOG0173|consensus 95.0 0.016 3.5E-07 42.6 2.1 58 12-75 32-90 (271)
87 KOG0177|consensus 94.9 0.037 8.1E-07 39.2 3.5 64 19-88 3-67 (200)
88 KOG0174|consensus 94.8 0.013 2.8E-07 41.8 1.1 68 13-86 15-83 (224)
89 KOG0173|consensus 94.8 0.02 4.3E-07 42.2 2.1 47 61-107 35-81 (271)
90 KOG0174|consensus 93.1 0.086 1.9E-06 37.7 2.6 48 60-107 16-63 (224)
91 KOG0185|consensus 93.0 0.095 2.1E-06 38.3 2.7 57 16-78 40-97 (256)
92 KOG0180|consensus 92.5 0.12 2.6E-06 36.3 2.6 46 61-106 6-51 (204)
93 KOG0177|consensus 90.8 0.32 6.9E-06 34.5 3.2 44 65-108 3-46 (200)
94 KOG0175|consensus 84.2 1.2 2.5E-05 33.2 3.0 64 14-83 68-136 (285)
95 KOG0185|consensus 77.1 3.1 6.8E-05 30.6 3.1 46 61-107 39-85 (256)
96 KOG0175|consensus 66.8 6.2 0.00013 29.5 2.7 53 48-106 61-114 (285)
97 PF08140 Cuticle_1: Crustacean 31.0 74 0.0016 16.9 2.5 28 45-79 7-34 (40)
98 PRK14390 hypothetical protein; 25.3 46 0.00099 19.4 1.2 15 8-22 25-39 (63)
99 PRK14384 hypothetical protein; 24.2 46 0.001 19.0 1.1 13 8-20 12-24 (56)
100 KOG2096|consensus 23.1 1.5E+02 0.0032 23.3 3.9 56 19-78 189-244 (420)
101 PRK14373 hypothetical protein; 22.6 50 0.0011 19.8 1.1 14 8-21 36-49 (73)
102 KOG2567|consensus 21.3 1.3E+02 0.0028 21.1 3.0 24 6-29 32-56 (179)
103 KOG2048|consensus 21.2 1.1E+02 0.0023 26.0 3.0 58 14-78 118-180 (691)
104 PRK14382 hypothetical protein; 21.1 60 0.0013 19.2 1.2 13 8-20 32-44 (68)
105 PF10167 NEP: Uncharacterised 20.6 61 0.0013 21.2 1.2 15 2-16 62-76 (118)
106 COG0759 Uncharacterized conser 20.0 62 0.0013 20.4 1.1 13 8-20 37-49 (92)
No 1
>KOG0184|consensus
Probab=99.89 E-value=1.2e-23 Score=149.34 Aligned_cols=78 Identities=35% Similarity=0.615 Sum_probs=75.4
Q ss_pred CcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhh
Q psy6595 2 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEK 81 (108)
Q Consensus 2 Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~ 81 (108)
||+||||||+|||++++|||||||||||||+.+|...++|+.+..++||+.|+ +|++++++|+.+|++.|++..
T Consensus 19 GrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~------r~iG~avaGl~~Dg~~l~~~a 92 (254)
T KOG0184|consen 19 GRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVD------RHIGMAVAGLIPDGRHLVNRA 92 (254)
T ss_pred CceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeec------ccccEEEeccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999988
Q ss_pred hhcc
Q psy6595 82 RNTN 85 (108)
Q Consensus 82 r~~~ 85 (108)
|..+
T Consensus 93 r~ea 96 (254)
T KOG0184|consen 93 RDEA 96 (254)
T ss_pred HHHH
Confidence 8643
No 2
>KOG0176|consensus
Probab=99.82 E-value=5.8e-21 Score=133.92 Aligned_cols=76 Identities=32% Similarity=0.556 Sum_probs=74.0
Q ss_pred CcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhh
Q psy6595 2 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEK 81 (108)
Q Consensus 2 Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~ 81 (108)
|||||||||+||++.|+|+|||++|+||||+.+|+..++|...++-.|++.|+ +|++|+++|+..|.+-|+.+.
T Consensus 19 GRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid------~HIgca~SGl~aDarTlve~a 92 (241)
T KOG0176|consen 19 GRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEID------DHIGCAMSGLIADARTLVERA 92 (241)
T ss_pred ceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehh------hceeeeccccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999888
Q ss_pred hh
Q psy6595 82 RN 83 (108)
Q Consensus 82 r~ 83 (108)
|.
T Consensus 93 rv 94 (241)
T KOG0176|consen 93 RV 94 (241)
T ss_pred HH
Confidence 85
No 3
>KOG0184|consensus
Probab=99.80 E-value=2.3e-20 Score=132.63 Aligned_cols=72 Identities=35% Similarity=0.640 Sum_probs=68.8
Q ss_pred cccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 36 RLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 36 ~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.||...++|||+||+||+|||+|||+++++++|++++||+||+.+|..+++|+.+.++ +||+.|++||||+.
T Consensus 7 GyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn-~ri~~V~r~iG~av 78 (254)
T KOG0184|consen 7 GYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSN-ERIFSVDRHIGMAV 78 (254)
T ss_pred cccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCC-CceEeecccccEEE
Confidence 5788888999999999999999999999999999999999999999999999999998 99999999999973
No 4
>KOG0178|consensus
Probab=99.80 E-value=2.4e-20 Score=131.81 Aligned_cols=78 Identities=42% Similarity=0.685 Sum_probs=73.9
Q ss_pred CcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccC-ccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 2 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 2 Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s-~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
|||||||||+||+++.++|+|+.++|||||+.+++..++|+..+ |..|||+|+ +++.|+++|.+.|+-+|.++
T Consensus 16 GRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~------d~iaC~vaGlt~DAnvL~n~ 89 (249)
T KOG0178|consen 16 GRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLN------DNIACAVAGLTSDANVLKNY 89 (249)
T ss_pred cchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcC------CceEEEEecccccHHHHHHH
Confidence 99999999999999999999999999999999999999998775 789999999 99999999999999999999
Q ss_pred hhhcc
Q psy6595 81 KRNTN 85 (108)
Q Consensus 81 ~r~~~ 85 (108)
.|..+
T Consensus 90 aRi~A 94 (249)
T KOG0178|consen 90 ARIIA 94 (249)
T ss_pred HHHHH
Confidence 98754
No 5
>KOG0176|consensus
Probab=99.79 E-value=4.2e-20 Score=129.62 Aligned_cols=75 Identities=32% Similarity=0.565 Sum_probs=71.4
Q ss_pred EeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 33 AEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 33 ~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
....|++..++|||+||+||+|||.+|++-|.+++|++++++++|+.+||.+++|..++++ .||+.||+||||++
T Consensus 4 trseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sv-eKi~eid~HIgca~ 78 (241)
T KOG0176|consen 4 TRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSV-EKIVEIDDHIGCAM 78 (241)
T ss_pred cHHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhh-hhheehhhceeeec
Confidence 3456899999999999999999999999999999999999999999999999999999999 99999999999975
No 6
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.79 E-value=1.1e-19 Score=129.80 Aligned_cols=79 Identities=33% Similarity=0.540 Sum_probs=72.3
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
.|||+|||||+||+++|+|+|||+++||||++++++..+.+...+...||++|+ ++..++++|..+|...+...
T Consensus 14 ~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~------~~i~~~~sG~~~D~~~l~~~ 87 (212)
T cd03751 14 DGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVD------RHIGIAVAGLLADGRHLVSR 87 (212)
T ss_pred CCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEec------CcEEEEEEEChHhHHHHHHH
Confidence 399999999999999999999999999999999998877777666779999999 99999999999999999987
Q ss_pred hhhcc
Q psy6595 81 KRNTN 85 (108)
Q Consensus 81 ~r~~~ 85 (108)
.|...
T Consensus 88 ~r~~~ 92 (212)
T cd03751 88 AREEA 92 (212)
T ss_pred HHHHH
Confidence 77544
No 7
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.79 E-value=1.3e-19 Score=130.38 Aligned_cols=79 Identities=27% Similarity=0.421 Sum_probs=71.5
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
-|||||||||++|+++|+|+||++++||||++++++..+++...+...||++|+ ++.+++++|..+|...++..
T Consensus 11 ~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~------~~i~~~~sG~~~D~~~l~~~ 84 (227)
T cd03750 11 SGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQIT------PHIGMVYSGMGPDFRVLVKK 84 (227)
T ss_pred CCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEc------CCEEEEEeEcHHhHHHHHHH
Confidence 399999999999999999999999999999999998877776656778999999 99999999999999998877
Q ss_pred hhhcc
Q psy6595 81 KRNTN 85 (108)
Q Consensus 81 ~r~~~ 85 (108)
.|...
T Consensus 85 ~r~~~ 89 (227)
T cd03750 85 ARKIA 89 (227)
T ss_pred HHHHH
Confidence 76543
No 8
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.78 E-value=1.7e-19 Score=128.51 Aligned_cols=79 Identities=46% Similarity=0.709 Sum_probs=72.4
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccC-ccCCeeeehhHHHhhcccceeeeEeeCCeeeehh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQVEYAMEAISHAGTCLGILAQDGILLAA 79 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s-~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~ 79 (108)
.|||||||||+||+++|+|+||++++|||||+++++...++.+.+ ...||++|+ ++++++++|..+|...++.
T Consensus 13 ~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~------~~i~~~~sG~~~D~~~l~~ 86 (213)
T cd03752 13 EGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKID------DHIACAVAGITSDANILIN 86 (213)
T ss_pred CCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEec------CCEEEEEecChHhHHHHHH
Confidence 499999999999999999999999999999999999888887766 679999999 9999999999999999998
Q ss_pred hhhhcc
Q psy6595 80 EKRNTN 85 (108)
Q Consensus 80 ~~r~~~ 85 (108)
..|...
T Consensus 87 ~~r~~~ 92 (213)
T cd03752 87 YARLIA 92 (213)
T ss_pred HHHHHH
Confidence 777543
No 9
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.78 E-value=2.2e-19 Score=131.02 Aligned_cols=77 Identities=34% Similarity=0.539 Sum_probs=70.8
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCc-cCCeeeehhHHHhhcccceeeeEeeCCeeeehh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQVEYAMEAISHAGTCLGILAQDGILLAA 79 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~-~gki~qieya~~av~~~~~~v~~~~~D~~vl~~ 79 (108)
-|||||||||+||+++|+|+|||+++|||||+++++..+.+.+.+. ..||++|+ +++.++++|..+|...+..
T Consensus 15 ~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~------~~i~~~~sG~~~D~~~l~~ 88 (253)
T PTZ00246 15 EGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKID------SHIFCAVAGLTADANILIN 88 (253)
T ss_pred CCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEec------CCEEEEEEEcHHHHHHHHH
Confidence 3999999999999999999999999999999999998888877664 68999999 9999999999999999987
Q ss_pred hhhh
Q psy6595 80 EKRN 83 (108)
Q Consensus 80 ~~r~ 83 (108)
..|.
T Consensus 89 ~~r~ 92 (253)
T PTZ00246 89 QCRL 92 (253)
T ss_pred HHHH
Confidence 6664
No 10
>KOG0183|consensus
Probab=99.78 E-value=6e-20 Score=130.00 Aligned_cols=95 Identities=21% Similarity=0.339 Sum_probs=83.2
Q ss_pred CcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhh
Q psy6595 2 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEK 81 (108)
Q Consensus 2 Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~ 81 (108)
|+|||||||+|||++|+++||++.+++||+..+|+...+|.....-.||.-++ +|..++++|+++|.++|++..
T Consensus 15 GhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld------~hV~mafaGl~aDArilinrA 88 (249)
T KOG0183|consen 15 GHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLD------DHVVMAFAGLTADARILINRA 88 (249)
T ss_pred CCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeec------ceeeEEecCCCccceeehhhH
Confidence 89999999999999999999999999999999999999998877788999999 999999999999999999998
Q ss_pred hh---cccccccCccccceeeeccce
Q psy6595 82 RN---TNKLLDEGTTSEKIYKLHDSL 104 (108)
Q Consensus 82 r~---~~~l~~~~~~~~kI~~I~~~i 104 (108)
|. +.+|.-+++. .|.+|+.+|
T Consensus 89 rvecqShrlt~edpv--tveyitRyi 112 (249)
T KOG0183|consen 89 RVECQSHRLTLEDPV--TVEYITRYI 112 (249)
T ss_pred hHhhhhhhcccCCCc--HHHHHHHHH
Confidence 85 3566555544 666666544
No 11
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.77 E-value=2.7e-19 Score=127.87 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=71.0
Q ss_pred CCcchHHHHHHHHHhc-cCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehh
Q psy6595 1 MSRLYQVEYAMEAISH-AGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAA 79 (108)
Q Consensus 1 ~Gr~~qveya~~av~~-g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~ 79 (108)
.|||+|||||+||+++ |+|+||++++||||++++++....+...+...||++|+ ++..++++|..+|+..+..
T Consensus 12 ~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~------~~i~~~~sG~~~D~~~l~~ 85 (215)
T cd03754 12 EGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRIT------DEIGCVMTGMIADSRSQVQ 85 (215)
T ss_pred CCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEc------CCEEEEEEechhhHHHHHH
Confidence 3999999999999986 66999999999999999998877766555668999999 9999999999999999998
Q ss_pred hhhhcccc
Q psy6595 80 EKRNTNKL 87 (108)
Q Consensus 80 ~~r~~~~l 87 (108)
..|....+
T Consensus 86 ~~r~~~~~ 93 (215)
T cd03754 86 RARYEAAE 93 (215)
T ss_pred HHHHHHHH
Confidence 87765443
No 12
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.77 E-value=2.9e-19 Score=126.87 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=70.6
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
.|||+|||||+||+++|+|+|||+++||||++++++....+.......||++|+ ++..++++|..+|...+...
T Consensus 11 ~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~------~~i~~~~sG~~~D~~~l~~~ 84 (207)
T cd03755 11 DGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLD------DHVCLAFAGLTADARVLINR 84 (207)
T ss_pred CCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEEC------CCEEEEEecchhhHHHHHHH
Confidence 399999999999999999999999999999999987666655444578999999 99999999999999999888
Q ss_pred hhhccc
Q psy6595 81 KRNTNK 86 (108)
Q Consensus 81 ~r~~~~ 86 (108)
.|....
T Consensus 85 ~r~~~~ 90 (207)
T cd03755 85 ARLECQ 90 (207)
T ss_pred HHHHHH
Confidence 776543
No 13
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.76 E-value=6.3e-19 Score=125.60 Aligned_cols=79 Identities=29% Similarity=0.475 Sum_probs=70.1
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
.|||||||||++|+++|+|+|||+++||||++++++....+. ....||++|+ ++..++++|..+|+..++..
T Consensus 11 ~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~------~~i~~~~sG~~~D~~~l~~~ 82 (211)
T cd03749 11 QGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVD------DHIGIAIAGLTADARVLSRY 82 (211)
T ss_pred CCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeC------CCEEEEEEeChHhHHHHHHH
Confidence 399999999999999999999999999999999998766654 3568999999 99999999999999999988
Q ss_pred hhhcccc
Q psy6595 81 KRNTNKL 87 (108)
Q Consensus 81 ~r~~~~l 87 (108)
.|....+
T Consensus 83 ~r~~~~~ 89 (211)
T cd03749 83 MRQECLN 89 (211)
T ss_pred HHHHHHH
Confidence 7765433
No 14
>KOG0863|consensus
Probab=99.76 E-value=3.8e-19 Score=127.02 Aligned_cols=75 Identities=31% Similarity=0.534 Sum_probs=71.0
Q ss_pred CcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhh
Q psy6595 2 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEK 81 (108)
Q Consensus 2 Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~ 81 (108)
|||+|||||+||+++|+++||+|+++..||++.++..+.|. +...||+.|| +|++.+++|+++|+++|....
T Consensus 17 Grl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seLs--s~QkKi~~iD------~h~g~siAGLt~Darvl~~Yl 88 (264)
T KOG0863|consen 17 GRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSELS--SHQKKIFKID------DHIGISIAGLTADARVLSRYL 88 (264)
T ss_pred ceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHHH--HhhheeEecc------cccceEEeccCcchHHHHHHH
Confidence 99999999999999999999999999999999999888886 6789999999 999999999999999999888
Q ss_pred hhc
Q psy6595 82 RNT 84 (108)
Q Consensus 82 r~~ 84 (108)
|..
T Consensus 89 r~e 91 (264)
T KOG0863|consen 89 RQE 91 (264)
T ss_pred HHH
Confidence 763
No 15
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.74 E-value=1.2e-18 Score=127.17 Aligned_cols=75 Identities=40% Similarity=0.664 Sum_probs=68.8
Q ss_pred eecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 34 EKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 34 ~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
...||..+++|||+|||+|+|||+||++++++++|++++|+++|++++|.++.++++....+||+.|++|+++++
T Consensus 2 ~~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~ 76 (253)
T PTZ00246 2 SRRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAV 76 (253)
T ss_pred CCccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEE
Confidence 347999999999999999999999999999999999999999999999999999887643489999999999863
No 16
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.74 E-value=2.1e-18 Score=122.84 Aligned_cols=80 Identities=31% Similarity=0.527 Sum_probs=71.6
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
.|||+|||||++|+++|+|+||++++||||++++++....+...+...||++|+ +++.++++|..+|...+...
T Consensus 11 ~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~------~~i~~~~sG~~~D~~~l~~~ 84 (213)
T cd03753 11 EGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEID------DHIGCAMSGLIADARTLIDH 84 (213)
T ss_pred CCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEc------CCEEEEEecCHHHHHHHHHH
Confidence 499999999999999999999999999999999998777776666678999999 99999999999999999877
Q ss_pred hhhccc
Q psy6595 81 KRNTNK 86 (108)
Q Consensus 81 ~r~~~~ 86 (108)
.|....
T Consensus 85 ~r~~~~ 90 (213)
T cd03753 85 ARVEAQ 90 (213)
T ss_pred HHHHHH
Confidence 665443
No 17
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.74 E-value=2e-18 Score=124.11 Aligned_cols=71 Identities=27% Similarity=0.513 Sum_probs=65.6
Q ss_pred ccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 37 LNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 37 ~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
||+.+++|||+||++|||||++|++++.+++|++++|+++|+.++|.++++..++.. +||+.|++|++|+.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~-~KI~~I~~~i~~~~ 71 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSV-HKVEQITPHIGMVY 71 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCc-ceEEEEcCCEEEEE
Confidence 578899999999999999999999999999999999999999999988888776665 99999999999863
No 18
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.73 E-value=2.7e-18 Score=122.34 Aligned_cols=72 Identities=61% Similarity=0.913 Sum_probs=66.9
Q ss_pred cccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 36 RLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 36 ~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
+|++.+++|||+||++|+|||++|++++++++|++++|+++|+.++|.++++++.+...+||+.|++|++++
T Consensus 2 ~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~ 73 (213)
T cd03752 2 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACA 73 (213)
T ss_pred CcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEE
Confidence 588999999999999999999999999999999999999999999999989888663349999999999986
No 19
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.73 E-value=2.4e-18 Score=124.64 Aligned_cols=78 Identities=31% Similarity=0.547 Sum_probs=70.4
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
.||++|||||+||+++|+|+|||+++||||++++++..+.+...+...||++|+ ++..++++|..+|...++..
T Consensus 20 ~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~------~~i~~~~sG~~~D~~~l~~~ 93 (241)
T PRK03996 20 DGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKID------DHIGAASAGLVADARVLIDR 93 (241)
T ss_pred CCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEc------CCEEEEEcccHHHHHHHHHH
Confidence 399999999999999999999999999999999998877776666678999999 99999999999999999866
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 94 ~~~~ 97 (241)
T PRK03996 94 ARVE 97 (241)
T ss_pred HHHH
Confidence 5543
No 20
>KOG0178|consensus
Probab=99.73 E-value=9.2e-19 Score=123.80 Aligned_cols=74 Identities=54% Similarity=0.858 Sum_probs=70.5
Q ss_pred eecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 34 EKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 34 ~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
.++|+++.++|+|+||++|+|||++|+++.++++|+..+||+||+.++|.+++|.+.+...+|||.|+|||+|+
T Consensus 2 sr~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~ 75 (249)
T KOG0178|consen 2 SRRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACA 75 (249)
T ss_pred CcCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEE
Confidence 45789999999999999999999999999999999999999999999999999999877779999999999986
No 21
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.73 E-value=3.1e-18 Score=121.82 Aligned_cols=78 Identities=33% Similarity=0.574 Sum_probs=69.9
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
.|||+|+|||+||+++|+|+||++++||||++++++....+...+...||++|+ ++..++++|..+|...+...
T Consensus 12 ~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~------~~i~~~~sG~~~D~~~l~~~ 85 (211)
T cd03756 12 DGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKID------DHVGAATSGLVADARVLIDR 85 (211)
T ss_pred CCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEc------CCEEEEEecCHHHHHHHHHH
Confidence 399999999999999999999999999999999998777766556678999999 99999999999999988876
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 86 l~~~ 89 (211)
T cd03756 86 ARVE 89 (211)
T ss_pred HHHH
Confidence 6543
No 22
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.73 E-value=3e-18 Score=122.32 Aligned_cols=72 Identities=33% Similarity=0.585 Sum_probs=66.9
Q ss_pred ecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 35 k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
.+|++.+++|||+||++|||||++|++++++++|++++|+++|+.++|.++++...+.. +||+.|++|++++
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~-~KI~~I~~~i~~~ 73 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSN-KRIFNVDRHIGIA 73 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchh-cceeEecCcEEEE
Confidence 46899999999999999999999999999999999999999999999988888876655 9999999999986
No 23
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.72 E-value=4.6e-18 Score=121.91 Aligned_cols=77 Identities=32% Similarity=0.567 Sum_probs=69.1
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
.|||+|||||++|+++|+|+||++++||||++++++....+.......||++|+ ++..++++|..+|...+...
T Consensus 13 ~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~------~~i~~~~sG~~~D~~~l~~~ 86 (224)
T TIGR03633 13 DGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKID------DHIGAATSGLVADARVLIDR 86 (224)
T ss_pred CCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEEC------CCEEEEEeecHHhHHHHHHH
Confidence 499999999999999999999999999999999998776666556678999999 99999999999999888866
Q ss_pred hhh
Q psy6595 81 KRN 83 (108)
Q Consensus 81 ~r~ 83 (108)
.|.
T Consensus 87 ~~~ 89 (224)
T TIGR03633 87 ARI 89 (224)
T ss_pred HHH
Confidence 544
No 24
>KOG0183|consensus
Probab=99.72 E-value=3.4e-18 Score=121.12 Aligned_cols=73 Identities=32% Similarity=0.503 Sum_probs=69.8
Q ss_pred ecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 35 k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.+|++.+++|||||+++|+|||++|+.+|.++++++.+|++||..++++..+|.+++.. +||..+|+|++|+.
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~-rkI~~ld~hV~maf 74 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTV-RKISMLDDHVVMAF 74 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhh-hhheeecceeeEEe
Confidence 36899999999999999999999999999999999999999999999999999999887 99999999999873
No 25
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.71 E-value=9.8e-18 Score=119.02 Aligned_cols=71 Identities=31% Similarity=0.491 Sum_probs=64.5
Q ss_pred ccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 37 LNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 37 ~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
|+..+++|||+||++|+|||++|++++++++|++++|+++|+.++|...++.+++.. +||+.|++|+++++
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~-~KI~~I~~~i~~~~ 71 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTV-RKICMLDDHVCLAF 71 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCcc-CcEEEECCCEEEEE
Confidence 567889999999999999999999999999999999999999999988787766544 89999999999863
No 26
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.70 E-value=1.5e-17 Score=118.91 Aligned_cols=71 Identities=24% Similarity=0.531 Sum_probs=64.2
Q ss_pred cccccccccCccCCeeeehhHHHhhcc-cceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 36 RLNQDFSFLPHMSRLYQVEYAMEAISH-AGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 36 ~~~~~l~~~s~~gki~qieya~~av~~-~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
+|+..+++|||+||++|+|||+||+++ +++++|++++|+++|++++|.+..++.++.. +||+.|++|++|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~-~Ki~~I~~~i~~~ 72 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTV-THLFRITDEIGCV 72 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCccc-CceEEEcCCEEEE
Confidence 478899999999999999999999986 5699999999999999999988888776655 8999999999986
No 27
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.70 E-value=1.7e-17 Score=117.79 Aligned_cols=77 Identities=31% Similarity=0.585 Sum_probs=69.4
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
.|||+|||||+||+++|+|+||++++|||+++++++....+...+...||++|+ ++..++++|..+|...+...
T Consensus 11 ~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~------~~i~~~~sG~~~D~~~l~~~ 84 (209)
T cd01911 11 EGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKID------DHIGCAVAGLTADARVLVNR 84 (209)
T ss_pred CCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEec------CCeEEEeccCcHhHHHHHHH
Confidence 499999999999999999999999999999999998877766555678999999 99999999999999988866
Q ss_pred hhh
Q psy6595 81 KRN 83 (108)
Q Consensus 81 ~r~ 83 (108)
.+.
T Consensus 85 l~~ 87 (209)
T cd01911 85 ARV 87 (209)
T ss_pred HHH
Confidence 654
No 28
>KOG0181|consensus
Probab=99.69 E-value=6.5e-18 Score=118.35 Aligned_cols=73 Identities=27% Similarity=0.496 Sum_probs=69.7
Q ss_pred eecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 34 EKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 34 ~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
+.+|..++++|||+||+.|||||+.|+.++.+++|++.+||+||+++|+..++|.++.+. +||+.|++||||+
T Consensus 3 d~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv-~KV~~i~~~IG~v 75 (233)
T KOG0181|consen 3 DFGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESV-RKVEKITPHIGCV 75 (233)
T ss_pred CcccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhh-hhHhhccCCcceE
Confidence 446888999999999999999999999999999999999999999999999999999888 9999999999996
No 29
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.68 E-value=4.3e-17 Score=115.94 Aligned_cols=72 Identities=40% Similarity=0.653 Sum_probs=65.3
Q ss_pred cccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 36 RLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 36 ~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.|+..+++|+|+||++|+|||.+|++++++++|++.+|++++++++|.+..+...+.. +||+.|++|+++++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~-~KI~~I~~~i~~~~ 72 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESI-EKIYKIDDHVGAAT 72 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCcc-ceEEEEcCCEEEEE
Confidence 3788899999999999999999999999999999999999999999988777665544 89999999999863
No 30
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.67 E-value=4.2e-17 Score=116.21 Aligned_cols=68 Identities=34% Similarity=0.547 Sum_probs=61.9
Q ss_pred ccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 37 LNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 37 ~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
||+.+++|+|+||++|+|||++|++++++++|++++|+++|++++|...++.+ . .+||+.|++|++++
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~~--~-~~KI~~I~~~i~~~ 68 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELSS--Y-QKKIFKVDDHIGIA 68 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccCC--c-cccEEEeCCCEEEE
Confidence 57888999999999999999999999999999999999999999998777643 2 38999999999986
No 31
>KOG0182|consensus
Probab=99.67 E-value=3.9e-17 Score=115.64 Aligned_cols=74 Identities=27% Similarity=0.561 Sum_probs=69.1
Q ss_pred eecccccccccCccCCeeeehhHHHhhcccc-eeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 34 EKRLNQDFSFLPHMSRLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 34 ~k~~~~~l~~~s~~gki~qieya~~av~~~~-~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
...+++.+++|||+||+||+|||+||+++.+ ++++.+.+|+.|++++|+..++|.|+++. +.+|+|++++||++
T Consensus 6 ~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tv-t~~f~itk~ig~v~ 80 (246)
T KOG0182|consen 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTV-THLFRITKKIGCVI 80 (246)
T ss_pred cCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccc-eeEEEeeccceEEE
Confidence 3468999999999999999999999999955 99999999999999999999999999888 99999999999974
No 32
>KOG0181|consensus
Probab=99.67 E-value=4e-17 Score=114.39 Aligned_cols=79 Identities=25% Similarity=0.387 Sum_probs=74.2
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
+|+|-|+|||..||.+|.+.|||+..|||||+.+|+..++|.+-.+..|+++|. ++++++++|..||.++|+..
T Consensus 16 sGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~------~~IG~vYSGmgpD~RvlV~~ 89 (233)
T KOG0181|consen 16 SGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKIT------PHIGCVYSGMGPDYRVLVHK 89 (233)
T ss_pred CCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhcc------CCcceEEecCCCceeehhhH
Confidence 699999999999999999999999999999999999999998877789999999 99999999999999999988
Q ss_pred hhhcc
Q psy6595 81 KRNTN 85 (108)
Q Consensus 81 ~r~~~ 85 (108)
.|..+
T Consensus 90 ~rkiA 94 (233)
T KOG0181|consen 90 SRKIA 94 (233)
T ss_pred HHHHH
Confidence 87654
No 33
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.67 E-value=6.2e-17 Score=116.07 Aligned_cols=71 Identities=38% Similarity=0.647 Sum_probs=64.9
Q ss_pred cccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 36 RLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 36 ~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
+|+..+++|+|+|||+|||||++|++++++++|++.+|+++|++.+|.+..+...+.. +||+.|++|++++
T Consensus 2 ~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~-~KI~~i~~~i~~~ 72 (224)
T TIGR03633 2 GYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSI-EKIFKIDDHIGAA 72 (224)
T ss_pred CCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCcc-ceEEEECCCEEEE
Confidence 5788999999999999999999999999999999999999999999987776655544 8999999999986
No 34
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.67 E-value=6.3e-17 Score=115.25 Aligned_cols=71 Identities=35% Similarity=0.598 Sum_probs=64.2
Q ss_pred ccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 37 LNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 37 ~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
|+.++++|+|+||++|+|||++|++++++++|++.+|+++|+.++|.+..+...+.. +||+.|++|++|+.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~-~KI~~I~~~i~~~~ 71 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSV-EKIMEIDDHIGCAM 71 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCcc-ceEEEEcCCEEEEE
Confidence 567889999999999999999999999999999999999999999987777665555 89999999999863
No 35
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.66 E-value=8.1e-17 Score=116.63 Aligned_cols=73 Identities=34% Similarity=0.618 Sum_probs=66.8
Q ss_pred eecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 34 EKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 34 ~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
...|+..+++|||+||++|+|||.+|++++++++|++++|+++|++++|.++.+...+.. +||+.|++|++++
T Consensus 7 ~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~-~KI~~I~~~i~~~ 79 (241)
T PRK03996 7 QMGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSI-EKIFKIDDHIGAA 79 (241)
T ss_pred ccccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCcc-ceEEEEcCCEEEE
Confidence 457899999999999999999999999999999999999999999999988777765555 8999999999986
No 36
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-16 Score=115.78 Aligned_cols=77 Identities=34% Similarity=0.616 Sum_probs=71.9
Q ss_pred CcchHHHHHHHHHhcc-CcEEEEeeCCeEEEEEeecccccccccCc-cCCeeeehhHHHhhcccceeeeEeeCCeeeehh
Q psy6595 2 SRLYQVEYAMEAISHA-GTCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQVEYAMEAISHAGTCLGILAQDGILLAA 79 (108)
Q Consensus 2 Gr~~qveya~~av~~g-~~~vgi~~~~gvvl~~~k~~~~~l~~~s~-~gki~qieya~~av~~~~~~v~~~~~D~~vl~~ 79 (108)
||++|+|||++|+.++ +|+||++++|||||+++|+..+.+++.+. ..|+++|+ ++++++++|..+|++.|+.
T Consensus 14 g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~------d~i~~~~sG~~aDa~~lv~ 87 (236)
T COG0638 14 GRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKID------DHIGMAIAGLAADAQVLVR 87 (236)
T ss_pred CchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEec------CCEEEEeccCcHhHHHHHH
Confidence 8999999999999998 79999999999999999999888877776 78999999 9999999999999999998
Q ss_pred hhhhc
Q psy6595 80 EKRNT 84 (108)
Q Consensus 80 ~~r~~ 84 (108)
..|..
T Consensus 88 ~~r~~ 92 (236)
T COG0638 88 YARAE 92 (236)
T ss_pred HHHHH
Confidence 88853
No 37
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.63 E-value=2.8e-16 Score=111.58 Aligned_cols=71 Identities=39% Similarity=0.686 Sum_probs=63.5
Q ss_pred ccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 37 LNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 37 ~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
|+..+++|+|+||++|+|||+++++++++++|++++|++++++++|.+..+...+.. +||+.|++|+++++
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~-~KI~~i~~~i~~~~ 71 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSV-EKIFKIDDHIGCAV 71 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCccc-ceEEEecCCeEEEe
Confidence 577889999999999999999999999999999999999999999987776654444 89999999999863
No 38
>KOG0182|consensus
Probab=99.63 E-value=1.7e-16 Score=112.41 Aligned_cols=77 Identities=25% Similarity=0.429 Sum_probs=71.9
Q ss_pred CcchHHHHHHHHHhccC-cEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 2 SRLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 2 Gr~~qveya~~av~~g~-~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
|||||||||+||+++++ |+|++|.+|++|.+++|+...+|.+.+....+|+|. +++++++.|..+|.+..+.+
T Consensus 20 GrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~it------k~ig~v~tG~~aDar~~v~r 93 (246)
T KOG0182|consen 20 GRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRIT------KKIGCVITGMIADARSQVQR 93 (246)
T ss_pred ceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEee------ccceEEEecCCcchHHHHHH
Confidence 99999999999999966 999999999999999999999999877789999999 99999999999999988877
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 94 ar~e 97 (246)
T KOG0182|consen 94 ARYE 97 (246)
T ss_pred HHHH
Confidence 7643
No 39
>KOG0863|consensus
Probab=99.60 E-value=2.4e-16 Score=112.81 Aligned_cols=72 Identities=31% Similarity=0.492 Sum_probs=66.9
Q ss_pred eecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 34 EKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 34 ~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.+.|++..++|||+||++|+|||++|++.|++++|+++.+..||+..+|..++|.+ +|+||+.||+|+|+.+
T Consensus 3 rnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seLss---~QkKi~~iD~h~g~si 74 (264)
T KOG0863|consen 3 RNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSELSS---HQKKIFKIDDHIGISI 74 (264)
T ss_pred cccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHHHH---hhheeEecccccceEE
Confidence 35789999999999999999999999999999999999999999999998888876 6899999999999874
No 40
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.2e-15 Score=106.29 Aligned_cols=73 Identities=37% Similarity=0.639 Sum_probs=66.9
Q ss_pred cccccccccCccCCeeeehhHHHhhccc-ceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 36 RLNQDFSFLPHMSRLYQVEYAMEAISHA-GTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 36 ~~~~~l~~~s~~gki~qieya~~av~~~-~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.++...++|+|+|+++|+|||++++.++ ++++|++++||+||+.++|.++++++.++..+||+.|+|||+|++
T Consensus 2 ~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~ 75 (236)
T COG0638 2 GYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAI 75 (236)
T ss_pred CCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEe
Confidence 4677889999999999999999999987 899999999999999999999998888774499999999999974
No 41
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=99.41 E-value=1.5e-13 Score=99.26 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=60.0
Q ss_pred HHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhccc
Q psy6595 7 VEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNK 86 (108)
Q Consensus 7 veya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~ 86 (108)
=|||+||+++|+|+|||+++|||||+++++. ....|||+|+ ++++++++|..+|+..|+...|....
T Consensus 17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~------d~ig~~~sG~~~D~~~lv~~~r~~a~ 83 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYADGILFVAENPS-------RSLHKISELY------DRIGFAAVGKYNEFENLRRAGIRYAD 83 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-------CCcCcEEEec------CCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999999999862 2467999999 99999999999999999987776433
Q ss_pred c
Q psy6595 87 L 87 (108)
Q Consensus 87 l 87 (108)
.
T Consensus 84 ~ 84 (228)
T TIGR03691 84 M 84 (228)
T ss_pred H
Confidence 3
No 42
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.09 E-value=3.2e-11 Score=57.39 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.3
Q ss_pred ccccccccCccCCeeeehhHHHh
Q psy6595 37 LNQDFSFLPHMSRLYQVEYAMEA 59 (108)
Q Consensus 37 ~~~~l~~~s~~gki~qieya~~a 59 (108)
||..+++|||+||++|||||+||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 57889999999999999999987
No 43
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.82 E-value=1.6e-09 Score=76.20 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=57.3
Q ss_pred ccCcEEEEeeCCeEEEEEeecccccccccC-ccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhccc
Q psy6595 16 HAGTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNK 86 (108)
Q Consensus 16 ~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s-~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~ 86 (108)
+|+|+|||+++|||||+++++..+.+.+.+ ...||++|+ ++..++++|..+|.+.++...|....
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~------~~i~~~~sG~~~D~~~l~~~~r~~~~ 67 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIG------DRLYIGLAGLATDVQTLAQKLRFRVN 67 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeC------CCEEEEccchHHHHHHHHHHHHHHHH
Confidence 689999999999999999999888877644 568999999 99999999999999999987776443
No 44
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=98.80 E-value=5.3e-09 Score=75.67 Aligned_cols=48 Identities=27% Similarity=0.383 Sum_probs=42.7
Q ss_pred ehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 53 VEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 53 ieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
=|||++|++++.+++|++++||+||+++++. ++. +|||.|++|+||++
T Consensus 17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-------~~~-~KI~~I~d~ig~~~ 64 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYADGILFVAENPS-------RSL-HKISELYDRIGFAA 64 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-------CCc-CcEEEecCCEEEEE
Confidence 4899999999999999999999999999863 234 89999999999974
No 45
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=98.76 E-value=3.6e-09 Score=77.33 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=59.3
Q ss_pred HHhccCcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccc
Q psy6595 13 AISHAGTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKL 87 (108)
Q Consensus 13 av~~g~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l 87 (108)
-+++|+|+|||+++||||++++++... .+...+...||++|+ ++..++++|..+|.+.|+...|....+
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~------~~i~~~~sG~~aD~~~l~~~lr~~~~~ 104 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEIN------PTLLGTMAGGAADCSFWERELAMQCRL 104 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcC------CCEEEEeCcCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999997764 666566789999999 999999999999999999887765433
No 46
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.75 E-value=3.5e-09 Score=75.49 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=58.3
Q ss_pred HhccCcEEEEeeCCeEEEEEeecccccccc-cCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhccc
Q psy6595 14 ISHAGTCLGILAQDGILLAAEKRLNQDFSF-LPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNK 86 (108)
Q Consensus 14 v~~g~~~vgi~~~~gvvl~~~k~~~~~l~~-~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~ 86 (108)
+++|+|+||++++|||+++++++....+.+ .....||++|+ ++..++++|..+|...++...|....
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~------~~i~~~~sG~~aD~~~l~~~~r~~~~ 72 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLT------DKCVLGSSGFQADILALTKRLKARIK 72 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcC------CCEEEEccchHHHHHHHHHHHHHHHH
Confidence 468999999999999999999988777755 45678999999 99999999999999999987775433
No 47
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=98.75 E-value=3.8e-09 Score=75.70 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=56.0
Q ss_pred ccCcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 16 HAGTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 16 ~g~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+|+|+||++++||||++++++... .+..++...||++|+ ++..++++|..+|+..|+...|..
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~------~~i~~~~sG~~aD~~~l~~~~r~~ 64 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTD------EYSAVGIAGTAGLAIELVRLFQVE 64 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcC------CcEEEEecccHHHHHHHHHHHHHH
Confidence 488999999999999999998776 666666789999999 999999999999999998777744
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=98.72 E-value=7.2e-09 Score=49.27 Aligned_cols=13 Identities=69% Similarity=0.999 Sum_probs=12.0
Q ss_pred CCcchHHHHHHHH
Q psy6595 1 MSRLYQVEYAMEA 13 (108)
Q Consensus 1 ~Gr~~qveya~~a 13 (108)
-|||||||||+||
T Consensus 11 ~Grl~QVEYA~~A 23 (23)
T PF10584_consen 11 DGRLFQVEYAMKA 23 (23)
T ss_dssp TSSBHHHHHHHHH
T ss_pred CCeEEeeEeeecC
Confidence 3999999999998
No 49
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.71 E-value=8.7e-09 Score=72.54 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=55.3
Q ss_pred cCcEEEEeeCCeEEEEEeeccc-ccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 17 AGTCLGILAQDGILLAAEKRLN-QDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 17 g~~~vgi~~~~gvvl~~~k~~~-~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
|+|+|||+++|||||+++++.. ..+.......|||+|+ ++..++++|..+|...++...|..
T Consensus 2 G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~------~~i~~~~sG~~~D~~~l~~~~r~~ 64 (197)
T cd03760 2 GTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVG------DNTLLGASGDYADFQYLKRLLDQL 64 (197)
T ss_pred CceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEec------CcEEEEeCcchHHHHHHHHHHHHH
Confidence 7899999999999999999877 5666666779999999 999999999999999999877754
No 50
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=98.69 E-value=9.8e-09 Score=71.13 Aligned_cols=65 Identities=22% Similarity=0.377 Sum_probs=54.3
Q ss_pred HhccCcEEEEeeCCeEEEEEeeccc--ccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 14 ISHAGTCLGILAQDGILLAAEKRLN--QDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 14 v~~g~~~vgi~~~~gvvl~~~k~~~--~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
|++|+|+||++++|||+++++++.. +.+...+...|+++|+ +++.++++|..+|...+....+..
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~------~~i~~~~sG~~~D~~~l~~~l~~~ 67 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKIN------DNIIIGFSGLTADFQYLIRRLREE 67 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEE------TTEEEEEEESHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeecc------CcceeeccccccchHHHHhhhccc
Confidence 6799999999999999999998766 4443323358999999 999999999999999998776654
No 51
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.66 E-value=1.1e-08 Score=71.65 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=54.3
Q ss_pred CcEEEEeeCCeEEEEEeeccccc-ccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQD-FSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKL 87 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~-l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l 87 (108)
+|+|||+++|||||+++++..+. +.......||++|+ ++..++++|..+|...|+...|....+
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~------~~i~~~~sG~~~D~~~l~~~~r~~~~~ 65 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEIN------PYLLGTMAGGAADCQYWERVLGRECRL 65 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEcc------CcEEEEeCccHHHHHHHHHHHHHHHHH
Confidence 48999999999999999988774 44345779999999 999999999999999999887765433
No 52
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=98.56 E-value=2.9e-08 Score=69.04 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=53.1
Q ss_pred cCcEEEEeeCCeEEEEEeeccc-ccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 17 AGTCLGILAQDGILLAAEKRLN-QDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 17 g~~~vgi~~~~gvvl~~~k~~~-~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
|+++|||+++||||++++++.. ..+.......||++|+ ++..++++|..+|...+....|..
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~------~~i~~~~sG~~~D~~~l~~~~~~~ 63 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQID------DYIAMTIAGSVGDAQSLVRILKAE 63 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcC------CCEEEEcCchHHHHHHHHHHHHHH
Confidence 6899999999999999998765 4455455678999999 999999999999999998766643
No 53
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.50 E-value=5.9e-08 Score=68.22 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=53.0
Q ss_pred CcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
.|+||++++||||++++++... .+...+...||++|+ ++..++++|..+|++.|+...|..
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~------~~i~~~~sG~~aD~~~l~~~~~~~ 63 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLS------DHKLMACSGEAGDRLQFAEYIQKN 63 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeC------CCeEEEEccchHHHHHHHHHHHHH
Confidence 4899999999999999998754 445556789999999 999999999999999998777654
No 54
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.44 E-value=9.7e-08 Score=69.51 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=55.1
Q ss_pred cEEEEeeCCeEEEEEeecccccccccCccCCeeeeh---hHHHhhcccceeeeEeeCCeeeehhhhhhccccc
Q psy6595 19 TCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE---YAMEAISHAGTCLGILAQDGILLAAEKRNTNKLL 88 (108)
Q Consensus 19 ~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qie---ya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~ 88 (108)
-+|||+++|||||+++++...++...+...||++|+ . ++++++.+|..+|+..|+...|....++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d-----~~I~~~~sG~~aD~~~l~~~~r~~~~~~ 69 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGE-----RVIVLLTAGNLATTQAVISLLQRDLEDP 69 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCC-----CEEEEEcCCcHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999888877666678999994 1 5799999999999999998887655443
No 55
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.42 E-value=1.3e-07 Score=65.97 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=52.4
Q ss_pred CcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhccc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNK 86 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~ 86 (108)
+|++||+++||||++++++... .+.......|+++|+ ++..++++|..+|...|....|....
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~sG~~~D~~~l~~~l~~~~~ 64 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLH------DRIYCCRSGSAADTQAIADYVRYYLD 64 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEcc------CCEEEEecccHHHHHHHHHHHHHHHH
Confidence 4899999999999999998766 344334679999999 99999999999999999877655433
No 56
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.41 E-value=1.2e-07 Score=66.36 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=52.5
Q ss_pred CcEEEEeeCCeEEEEEeecccccc-cccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQDF-SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTN 85 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~l-~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~ 85 (108)
+|+|||+++||||++++++..... .......|+|+|+ ++..++++|..+|...|....|...
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~sG~~~D~~~l~~~~~~~~ 63 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIA------PNIYCCGAGTAADTEAVTNMISSNL 63 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEec------CCEEEEcCccHHHHHHHHHHHHHHH
Confidence 489999999999999999877654 3344678999999 9999999999999999997666543
No 57
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=98.40 E-value=2.3e-07 Score=63.84 Aligned_cols=61 Identities=28% Similarity=0.519 Sum_probs=53.0
Q ss_pred CcEEEEeeCCeEEEEEeecccccccc-cCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQDFSF-LPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~l~~-~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+++||++++||||++++++....+.. .+...|+|+|+ ++..++++|..+|...+....+..
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~------~~i~~~~sG~~~D~~~l~~~~~~~ 62 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKID------DHIGCAFAGLAADAQTLVERLRKE 62 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEEC------CCEEEEEeeCHHHHHHHHHHHHHH
Confidence 58999999999999999987766655 56789999999 999999999999999998766643
No 58
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.37 E-value=1.8e-07 Score=65.07 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=53.0
Q ss_pred CcEEEEeeCCeEEEEEeecccccccc-cCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhh
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQDFSF-LPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRN 83 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~l~~-~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~ 83 (108)
+++||++++|||||+++++....+.. .+...|+|+|+ ++..++++|..+|...+....+.
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~------~~i~~~~sG~~~D~~~l~~~~~~ 61 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKIS------DNILLGTAGSAADTQALTRLLKR 61 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEcc------CCEEEEccccHHHHHHHHHHHHH
Confidence 48999999999999999988777766 67789999999 99999999999999988866553
No 59
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.29 E-value=3.6e-07 Score=63.68 Aligned_cols=60 Identities=23% Similarity=0.410 Sum_probs=51.9
Q ss_pred CcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhh
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRN 83 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~ 83 (108)
+|+||++++||||++++++... .+.......||++|+ ++..++++|..+|...|....|.
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~------~~i~~~~sG~~~D~~~l~~~~~~ 61 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQID------DKIAMTIAGSVGDAQSLVRILKA 61 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEcc------CCEEEEcCccHHHHHHHHHHHHH
Confidence 4899999999999999998766 554455789999999 99999999999999998876654
No 60
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.16 E-value=2.1e-06 Score=60.37 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=41.1
Q ss_pred ccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 62 HAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 62 ~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
++++++|++++|+++|++++|.++.+++.....+||+.|++|++|+.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~ 48 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGL 48 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEc
Confidence 57899999999999999999999998885533389999999999873
No 61
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=98.04 E-value=2.8e-06 Score=59.15 Aligned_cols=66 Identities=8% Similarity=0.072 Sum_probs=54.2
Q ss_pred cCcEEEEeeCCeEEEEEeecccccccccC-ccCCeeee-hhHHHhhcccceeeeEeeCCeeeehhhhhhccccc
Q psy6595 17 AGTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQV-EYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLL 88 (108)
Q Consensus 17 g~~~vgi~~~~gvvl~~~k~~~~~l~~~s-~~gki~qi-eya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~ 88 (108)
|.|.||++.+||||++++++......+.+ ...|+++| + ++..++.+|...|...|....+...+++
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~------d~i~~~~aG~~aD~q~l~~~l~~~~~~y 68 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYN------GKVLAGFAGSTADAFTLFERFEAKLEEH 68 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCC------CCEEEEEeccHHHHHHHHHHHHHHHHHc
Confidence 57999999999999999998766555555 45799999 8 9999999999999998887766543333
No 62
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.03 E-value=5.2e-06 Score=59.17 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=41.4
Q ss_pred cccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 61 SHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 61 ~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
+++++++|++++|+++|+.++|.+..++......+||+.|++|+++++
T Consensus 6 ~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~ 53 (212)
T cd03757 6 DNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGS 53 (212)
T ss_pred CCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEc
Confidence 779999999999999999999998888764323399999999999863
No 63
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.01 E-value=6.4e-06 Score=57.95 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=39.7
Q ss_pred cceeeeEeeCCeeeehhhhhhc-ccccccCccccceeeeccceeEeC
Q psy6595 63 AGTCLGILAQDGILLAAEKRNT-NKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 63 ~~~~v~~~~~D~~vl~~~~r~~-~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
+++++|++++|+++|++++|.. .++..++.. +|||.|++|++++.
T Consensus 2 G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~-~KI~~i~~~i~~~~ 47 (197)
T cd03760 2 GTSVIAIKYKDGVIIAADTLGSYGSLARFKNV-ERIFKVGDNTLLGA 47 (197)
T ss_pred CceEEEEEeCCcEEEEEcCcccccceeecCCC-CcEEEecCcEEEEe
Confidence 5789999999999999999987 677777666 99999999999863
No 64
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=97.97 E-value=7.4e-06 Score=56.64 Aligned_cols=47 Identities=38% Similarity=0.637 Sum_probs=40.5
Q ss_pred hcccceeeeEeeCCeeeehhhhhhc--ccccccCccccceeeeccceeEe
Q psy6595 60 ISHAGTCLGILAQDGILLAAEKRNT--NKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 60 v~~~~~~v~~~~~D~~vl~~~~r~~--~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
|++|++++|++++|+++|+.++|.+ +.+..++.. +||+.|++|+++.
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~-~ki~~i~~~i~~~ 49 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTV-DKIFKINDNIIIG 49 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTS-SSEEEEETTEEEE
T ss_pred CCCCeEEEEEEECCEEEEEEcccccccccccccccc-ceeeeccCcceee
Confidence 4789999999999999999999887 666566555 8999999999875
No 65
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=97.95 E-value=8.7e-06 Score=59.58 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=41.2
Q ss_pred cccceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEeC
Q psy6595 61 SHAGTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 61 ~~~~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.++++++|++++|+++|++++|... .+..++.. +||+.|++|++++.
T Consensus 37 ~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~-~KI~~I~~~i~~~~ 84 (247)
T PTZ00488 37 AHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSV-KKVIEINPTLLGTM 84 (247)
T ss_pred CCCceEEEEEeCCEEEEEEecCcccCCEEEcCCc-CceEEcCCCEEEEe
Confidence 7799999999999999999998774 77766666 99999999999863
No 66
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=97.95 E-value=9.4e-06 Score=58.14 Aligned_cols=46 Identities=22% Similarity=0.426 Sum_probs=40.0
Q ss_pred ccceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEeC
Q psy6595 62 HAGTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 62 ~~~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
++++++|++++|+++|+.++|.+. .+..++.. +||+.|++|++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~-~KI~~i~~~i~~~~ 47 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDV-EKVYPTDEYSAVGI 47 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCc-ceEEEcCCcEEEEe
Confidence 367999999999999999999886 77776666 99999999999863
No 67
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=97.86 E-value=1.6e-05 Score=55.61 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=36.4
Q ss_pred eeeeEeeCCeeeehhhhhhccc-ccccCccccceeeeccceeEeC
Q psy6595 65 TCLGILAQDGILLAAEKRNTNK-LLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 65 ~~v~~~~~D~~vl~~~~r~~~~-l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
+++|++++|+++|+.++|.+.. +..++.. +||+.|++|++++.
T Consensus 2 T~igi~~kdgVvla~d~r~~~~~~~~~~~~-~KI~~I~~~i~~~~ 45 (188)
T cd03761 2 TTLAFIFQGGVIVAVDSRATAGSYIASQTV-KKVIEINPYLLGTM 45 (188)
T ss_pred cEEEEEECCEEEEEEcCCccCCcEEEcCCc-ceEEEccCcEEEEe
Confidence 7899999999999999998874 4444455 99999999999863
No 68
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=97.86 E-value=8.1e-06 Score=56.89 Aligned_cols=64 Identities=8% Similarity=0.087 Sum_probs=52.5
Q ss_pred CcEEEEeeCCeEEEEEeecccccccccC-ccCCeeeehhHHHhhc-ccceeeeEeeCCeeeehhhhhhcccc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQVEYAMEAIS-HAGTCLGILAQDGILLAAEKRNTNKL 87 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~l~~~s-~~gki~qieya~~av~-~~~~~v~~~~~D~~vl~~~~r~~~~l 87 (108)
.|.||++++|||||+++++......+.+ ...|+++|+ + +..++.+|...|...|+...+...++
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~------d~~i~~~~aG~~aD~~~l~~~~~~~~~~ 66 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLY------NGKVIAGFAGSTADAFTLFERFEAKLEQ 66 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeC------CCCEEEEecccHHHHHHHHHHHHHHHHH
Confidence 4789999999999999998766655555 457999998 8 99999999999999888665544333
No 69
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=97.78 E-value=1.2e-05 Score=56.02 Aligned_cols=65 Identities=8% Similarity=0.082 Sum_probs=53.5
Q ss_pred CcEEEEeeCCeEEEEEeecccccccccCc-cCCeeee-hhHHHhhcccceeeeEeeCCeeeehhhhhhccccc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQV-EYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLL 88 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~l~~~s~-~gki~qi-eya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~ 88 (108)
.|.+|++++|||||+++++......+.+. ..|+++| + ++..++.+|-..|...|+...+...+++
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~------d~i~~~~aG~~aD~q~l~~~~~~~~~~y 67 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYN------GKVLAGFAGSTADAFTLFERFEAKLEEY 67 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCC------CCEEEEecchHHHHHHHHHHHHHHHHHc
Confidence 47899999999999999987666656654 5799999 7 8899999999999999997766544443
No 70
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=97.75 E-value=3.2e-05 Score=53.66 Aligned_cols=45 Identities=27% Similarity=0.588 Sum_probs=37.4
Q ss_pred cceeeeEeeCCeeeehhhhhhc-ccccccCccccceeeeccceeEeC
Q psy6595 63 AGTCLGILAQDGILLAAEKRNT-NKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 63 ~~~~v~~~~~D~~vl~~~~r~~-~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
|++++|++++|+++|+.++|.+ ..+...+.. +|||.|++|+++++
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~-~KI~~i~~~i~~~~ 46 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNA-KKVFQIDDYIAMTI 46 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCc-ccEEEcCCCEEEEc
Confidence 4689999999999999999987 455555555 99999999999864
No 71
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=97.73 E-value=3.4e-05 Score=54.17 Aligned_cols=44 Identities=32% Similarity=0.434 Sum_probs=37.1
Q ss_pred ceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEeC
Q psy6595 64 GTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.+++|++++||++|+.++|.+. .+..+++. +||+.|++|++++.
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~-~KI~~I~~~i~~~~ 46 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDE-DKIYKLSDHKLMAC 46 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCc-ccEEEeCCCeEEEE
Confidence 4789999999999999999865 44665655 99999999999863
No 72
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=97.72 E-value=4.1e-05 Score=55.81 Aligned_cols=43 Identities=23% Similarity=0.484 Sum_probs=38.1
Q ss_pred eeeeEeeCCeeeehhhhhhcccccccCccccceeeec----cceeEeC
Q psy6595 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLH----DSLNIIT 108 (108)
Q Consensus 65 ~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~----~~ig~~~ 108 (108)
.++|++++||+||++++|.++++.+.++. +||+.|+ +|++|++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~-~KI~~I~~~~d~~I~~~~ 48 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTY-RKMFVFSVPGERVIVLLT 48 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCcccccc-ceEEEecCCCCCEEEEEc
Confidence 58999999999999999998898876654 9999998 9999864
No 73
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=97.66 E-value=5.9e-05 Score=52.65 Aligned_cols=44 Identities=25% Similarity=0.393 Sum_probs=36.1
Q ss_pred eeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 65 ~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
+++|++++||++|++.+|.+...+......+|||.|++|+++++
T Consensus 2 t~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~ 45 (189)
T cd03763 2 TIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCG 45 (189)
T ss_pred eEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEc
Confidence 68999999999999999988754443323389999999999864
No 74
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=97.62 E-value=6.7e-05 Score=52.04 Aligned_cols=44 Identities=34% Similarity=0.519 Sum_probs=38.2
Q ss_pred ceeeeEeeCCeeeehhhhhhcccccc-cCccccceeeeccceeEeC
Q psy6595 64 GTCLGILAQDGILLAAEKRNTNKLLD-EGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~~l~~-~~~~~~kI~~I~~~ig~~~ 108 (108)
++++|++.+|+++|++++|.+..+.. .+.. +|||.|++++++++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~-~Ki~~i~~~i~~~~ 45 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNF-DKIFKISDNILLGT 45 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCc-CcEEEccCCEEEEc
Confidence 36899999999999999999888877 4555 99999999999863
No 75
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=97.61 E-value=7.2e-05 Score=52.07 Aligned_cols=44 Identities=23% Similarity=0.432 Sum_probs=36.1
Q ss_pred ceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEeC
Q psy6595 64 GTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.+++|++.+|+++|++++|.+. .+...+.. +||+.|++|+++++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~-~Ki~~i~~~i~~~~ 45 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVT-DKLTQLHDRIYCCR 45 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCc-ccEEEccCCEEEEe
Confidence 3789999999999999999877 44444444 99999999999864
No 76
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=97.58 E-value=6.2e-05 Score=49.69 Aligned_cols=62 Identities=26% Similarity=0.289 Sum_probs=53.2
Q ss_pred CcEEEEeeCCeEEEEEeecccccccc-cCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQDFSF-LPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTN 85 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~l~~-~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~ 85 (108)
.++||+++++|++++++++....+.. ..+..|+++++ ++..++++|...|...+....+...
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~------~~~~~~~sG~~~d~~~~~~~~~~~~ 63 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNE------DGIAWGLAGLAADAQTLVRRLREAL 63 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEec------CCeEEEEecChHHHHHHHHHHHHHH
Confidence 47999999999999999988777766 45678999999 9999999999999998887665543
No 77
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=97.53 E-value=0.0001 Score=51.27 Aligned_cols=44 Identities=30% Similarity=0.632 Sum_probs=37.1
Q ss_pred ceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEeC
Q psy6595 64 GTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.+++|++.+|+++++.++|.++ .+..++.. +||+.|++|+++++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~-~KI~~i~~~i~~~~ 45 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNV-KKIFQIDDKIAMTI 45 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCc-ccEEEccCCEEEEc
Confidence 3789999999999999999876 55555555 99999999999863
No 78
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=97.51 E-value=0.00012 Score=50.31 Aligned_cols=44 Identities=43% Similarity=0.625 Sum_probs=37.2
Q ss_pred ceeeeEeeCCeeeehhhhhhcccccc-cCccccceeeeccceeEeC
Q psy6595 64 GTCLGILAQDGILLAAEKRNTNKLLD-EGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~~l~~-~~~~~~kI~~I~~~ig~~~ 108 (108)
++++|++.+|+++|++.+|.+..+.. .+.. +|||.|++++++.+
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~-~Ki~~i~~~i~~~~ 45 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTV-EKIFKIDDHIGCAF 45 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCc-ceEEEECCCEEEEE
Confidence 37899999999999999998887776 3444 89999999999863
No 79
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=97.24 E-value=0.00038 Score=48.48 Aligned_cols=45 Identities=13% Similarity=0.068 Sum_probs=38.3
Q ss_pred cceeeeEeeCCeeeehhhhhhcccccccCccccceeee-ccceeEe
Q psy6595 63 AGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL-HDSLNII 107 (108)
Q Consensus 63 ~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I-~~~ig~~ 107 (108)
+.+++|++.+|+++|+...|.+...+..+...+||++| ++|++|+
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~ 46 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAG 46 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEE
Confidence 35889999999999999999877666655556999999 9999886
No 80
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=97.02 E-value=0.00082 Score=46.87 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=37.3
Q ss_pred eeeeEeeCCeeeehhhhhhcccccccCccccceeeecc-ceeEe
Q psy6595 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD-SLNII 107 (108)
Q Consensus 65 ~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~-~ig~~ 107 (108)
+.+|++.+|+++|+...|.+...+..+...+||++|++ |++|.
T Consensus 2 Tivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~ 45 (171)
T cd01913 2 TILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAG 45 (171)
T ss_pred eEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEE
Confidence 68999999999999999987766666556699999999 99886
No 81
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=96.95 E-value=0.0011 Score=46.22 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=37.5
Q ss_pred eeeeEeeCCeeeehhhhhhcccccccCccccceeee-ccceeEeC
Q psy6595 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL-HDSLNIIT 108 (108)
Q Consensus 65 ~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I-~~~ig~~~ 108 (108)
+.+|++.+|+++|+...|.+...+..+...+||++| ++|++|.+
T Consensus 2 Tivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~ 46 (171)
T TIGR03692 2 TILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGF 46 (171)
T ss_pred eEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEe
Confidence 689999999999999999887766665566999999 59999863
No 82
>KOG0180|consensus
Probab=96.72 E-value=0.0008 Score=47.02 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=57.4
Q ss_pred hccCcEEEEeeCCeEEEEEeecccccccccCc-cCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccc
Q psy6595 15 SHAGTCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLD 89 (108)
Q Consensus 15 ~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~-~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~ 89 (108)
-+|+++|+...|++|.++++.+.......-+. -.|+|.+. ++.-.-.+|+.+|...|..+-|....||.
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~ig------dr~y~GL~glatDvqtl~~~~~fr~nLy~ 75 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIG------DRLYLGLTGLATDVQTLLERLRFRKNLYE 75 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecC------CeeEEeccccchhHHHHHHHHHHHHhHHH
Confidence 37999999999999999999988766555554 58999999 88889999999999999887776555554
No 83
>KOG0179|consensus
Probab=96.51 E-value=0.0016 Score=46.79 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=52.8
Q ss_pred HhccCcEEEEeeCCeEEEEEeecccccccccC-ccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhh
Q psy6595 14 ISHAGTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 82 (108)
Q Consensus 14 v~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s-~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r 82 (108)
..+|+|+|+|...|..|++.+.+..+...+-+ ..+|+|++. ++..+.-+|...|+.-|....+
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~------D~~vl~~sGF~aD~l~L~k~i~ 89 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLG------DNIVLGSSGFYADTLALVKVIK 89 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheecc------CceEEecccchhhHHHHHHHHH
Confidence 46899999999999999999988776666655 468999999 9999999999999876664433
No 84
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=95.68 E-value=0.016 Score=37.97 Aligned_cols=44 Identities=32% Similarity=0.357 Sum_probs=36.3
Q ss_pred ceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 64 GTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
+++++++.+|+++++...+.+..+.......+|++.+++++++.
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~ 44 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWG 44 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEE
Confidence 36889999999999999998877776322348999999999886
No 85
>KOG0179|consensus
Probab=95.32 E-value=0.024 Score=40.81 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=40.4
Q ss_pred cccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 61 SHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 61 ~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
+|+++++++-..|..|++...|.+.........++|||.++|++.+.
T Consensus 27 ~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~ 73 (235)
T KOG0179|consen 27 DNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLG 73 (235)
T ss_pred cCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEe
Confidence 89999999999999999999998766655555569999999998775
No 86
>KOG0173|consensus
Probab=95.00 E-value=0.016 Score=42.61 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=46.3
Q ss_pred HHHhccCcEEEEeeCCeEEEEEeecccccccccC-ccCCeeeehhHHHhhcccceeeeEeeCCee
Q psy6595 12 EAISHAGTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQVEYAMEAISHAGTCLGILAQDGI 75 (108)
Q Consensus 12 ~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s-~~gki~qieya~~av~~~~~~v~~~~~D~~ 75 (108)
++.+-|.+.||+..|||||++++.+......+.+ .-.||+++- +++.++-+|...|.-
T Consensus 32 ~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia------~~IyccGAGtAADte 90 (271)
T KOG0173|consen 32 KATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIA------PNIYCCGAGTAADTE 90 (271)
T ss_pred cccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcc------cceEEccCCchhhHH
Confidence 4567888999999999999999987665554443 346888888 999999888888854
No 87
>KOG0177|consensus
Probab=94.86 E-value=0.037 Score=39.17 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=52.2
Q ss_pred cEEEEeeCCeEEEEEeeccccccccc-CccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhccccc
Q psy6595 19 TCLGILAQDGILLAAEKRLNQDFSFL-PHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLL 88 (108)
Q Consensus 19 ~~vgi~~~~gvvl~~~k~~~~~l~~~-s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~ 88 (108)
+.+||+..|.|++|+++...+.++.. +.+.|++++. ++..++..|-..|.+-..........|+
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls------~~~lm~~~Ge~GDt~qF~eyi~~Ni~LY 67 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLS------DHILMATVGEAGDTVQFTEYIQKNIQLY 67 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEec------cceeeeeecCCCceehHHHHHHhhhhHH
Confidence 57999999999999998776666655 4568999999 9999999999999998876665544444
No 88
>KOG0174|consensus
Probab=94.83 E-value=0.013 Score=41.79 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=57.3
Q ss_pred HHhccCcEEEEeeCCeEEEEEeecccccccccC-ccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhccc
Q psy6595 13 AISHAGTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNK 86 (108)
Q Consensus 13 av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s-~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~ 86 (108)
-+.-|.|.++++.++|||+.++.+......+.+ -..||-||. +++.+|-+|-..|...+++..+-.-.
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~it------D~i~cCRSGSAADtQaiaD~~~Y~L~ 83 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPIT------DNIYCCRSGSAADTQAIADIVRYHLE 83 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceecc------ccEEEecCCchhhHHHHHHHHHHHHH
Confidence 467899999999999999999988766655554 457999999 99999999999999999988775433
No 89
>KOG0173|consensus
Probab=94.81 E-value=0.02 Score=42.17 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=40.9
Q ss_pred cccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 61 SHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 61 ~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
+.+.+.++...+||++++...|.+..-...+.+.+||+.|.++|+|.
T Consensus 35 kTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~Iycc 81 (271)
T KOG0173|consen 35 KTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCC 81 (271)
T ss_pred ccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEc
Confidence 77778889999999999999998876666667779999999999974
No 90
>KOG0174|consensus
Probab=93.14 E-value=0.086 Score=37.66 Aligned_cols=48 Identities=17% Similarity=0.325 Sum_probs=42.3
Q ss_pred hcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 60 ISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 60 v~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
+..+.+.++....||+||...-|.+...+..+....|+-+|+|+|+|-
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cC 63 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCC 63 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEe
Confidence 467789999999999999999999888888777778999999999873
No 91
>KOG0185|consensus
Probab=92.99 E-value=0.095 Score=38.34 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=46.7
Q ss_pred ccCcEEEEeeCCeEEEEEeecc-cccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeeh
Q psy6595 16 HAGTCLGILAQDGILLAAEKRL-NQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLA 78 (108)
Q Consensus 16 ~g~~~vgi~~~~gvvl~~~k~~-~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~ 78 (108)
-|++++++|.+|||+++++..- =-++.-|..-.|++.+. ++.-...+|-.+|...|-
T Consensus 40 TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVg------dntllG~sGdisD~Q~i~ 97 (256)
T KOG0185|consen 40 TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVG------DNTLLGASGDISDFQYIQ 97 (256)
T ss_pred ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEec------CceEEecCccHHHHHHHH
Confidence 4788999999999999998742 24455677889999999 999899999888877554
No 92
>KOG0180|consensus
Probab=92.52 E-value=0.12 Score=36.31 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=36.0
Q ss_pred cccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeE
Q psy6595 61 SHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNI 106 (108)
Q Consensus 61 ~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~ 106 (108)
-+|+++++...+|++.+++.+|.......-....+|||.+++++.+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~ 51 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYL 51 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEE
Confidence 3688999999999999999999754443322235999999999875
No 93
>KOG0177|consensus
Probab=90.78 E-value=0.32 Score=34.55 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=32.9
Q ss_pred eeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 65 ~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
+.+|++++|.+++++..........-+...+|++.+++|+-|++
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~ 46 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMAT 46 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeee
Confidence 67899999999999877654333332223489999999998864
No 94
>KOG0175|consensus
Probab=84.18 E-value=1.2 Score=33.19 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=50.9
Q ss_pred HhccCcEEEEeeCCeEEEEEeecccccccccCc-cCCeeeehhHHHhhcccceeeeEeeCCee----eehhhhhh
Q psy6595 14 ISHAGTCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQVEYAMEAISHAGTCLGILAQDGI----LLAAEKRN 83 (108)
Q Consensus 14 v~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~-~gki~qieya~~av~~~~~~v~~~~~D~~----vl~~~~r~ 83 (108)
..+|+|+++-+.+.||+++++.+-...-.+-+. ..|+..|+ ...--+.+|-..|+. +|+.+.|.
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn------~ylLGTmAGgAADCqfWer~L~kecRL 136 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEIN------PYLLGTMAGGAADCQFWERVLAKECRL 136 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeec------hhhhhcccCcchhhHHHHHHHHHHHHH
Confidence 468999999999999999999887766666653 58999999 777777888888975 66655553
No 95
>KOG0185|consensus
Probab=77.10 E-value=3.1 Score=30.59 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=34.4
Q ss_pred cccceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEe
Q psy6595 61 SHAGTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 61 ~~~~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
-.|...++.+.+||+++++...-+. ++..-..+ ++++.+++|+-+.
T Consensus 39 vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nV-eRi~kVgdntllG 85 (256)
T KOG0185|consen 39 VTGTSVLALKYKDGVVIAADTLGSYGSLARYKNV-ERIFKVGDNTLLG 85 (256)
T ss_pred eccceEEEEEecCceEEEecccccchhhhhhcCc-eeeEEecCceEEe
Confidence 4567899999999999998887653 22222345 8999999998653
No 96
>KOG0175|consensus
Probab=66.77 E-value=6.2 Score=29.47 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=42.3
Q ss_pred CCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhccccccc-CccccceeeeccceeE
Q psy6595 48 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDE-GTTSEKIYKLHDSLNI 106 (108)
Q Consensus 48 gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~-~~~~~kI~~I~~~ig~ 106 (108)
.+-.+|+. .|+.++.+=+...|++++..-|.++-.+.. .+. +||..|++++--
T Consensus 61 ~~~~~i~~-----~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv-~KVIeIn~ylLG 114 (285)
T KOG0175|consen 61 TAGVLIKF-----AHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTV-KKVIEINPYLLG 114 (285)
T ss_pred cccceeee-----cCCceEEEEEecCcEEEEEeccccccceeechhh-ceeeeechhhhh
Confidence 34455553 789999999999999999999988777765 444 899999998743
No 97
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=31.01 E-value=74 Score=16.91 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=20.6
Q ss_pred CccCCeeeehhHHHhhcccceeeeEeeCCeeeehh
Q psy6595 45 PHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAA 79 (108)
Q Consensus 45 s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~ 79 (108)
.|+|+..|+. .... .+....+.++|+.+
T Consensus 7 ~~dG~~~q~~------~~~a-~ivl~GpSG~v~sd 34 (40)
T PF08140_consen 7 TPDGTNVQFP------HGVA-NIVLIGPSGAVLSD 34 (40)
T ss_pred CCCCCEEECC------cccc-eEEEECCceEEeeC
Confidence 5899999997 4443 77778888887754
No 98
>PRK14390 hypothetical protein; Provisional
Probab=25.25 E-value=46 Score=19.44 Aligned_cols=15 Identities=40% Similarity=0.662 Sum_probs=11.4
Q ss_pred HHHHHHHhccCcEEE
Q psy6595 8 EYAMEAISHAGTCLG 22 (108)
Q Consensus 8 eya~~av~~g~~~vg 22 (108)
|||.+|+++-+..-|
T Consensus 25 ~Ya~~Ai~~~G~~kG 39 (63)
T PRK14390 25 SYGYEAITRHGPWKG 39 (63)
T ss_pred HHHHHHHHHhCcHHH
Confidence 899999988765433
No 99
>PRK14384 hypothetical protein; Provisional
Probab=24.22 E-value=46 Score=18.99 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=9.7
Q ss_pred HHHHHHHhccCcE
Q psy6595 8 EYAMEAISHAGTC 20 (108)
Q Consensus 8 eya~~av~~g~~~ 20 (108)
|||.+|+++-+..
T Consensus 12 ~Ya~~Ai~~~G~~ 24 (56)
T PRK14384 12 CYAETALKRFGVI 24 (56)
T ss_pred HHHHHHHHHHChH
Confidence 7888888876543
No 100
>KOG2096|consensus
Probab=23.08 E-value=1.5e+02 Score=23.31 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=32.0
Q ss_pred cEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeeh
Q psy6595 19 TCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLA 78 (108)
Q Consensus 19 ~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~ 78 (108)
..+-+-..++....+....+.++..++-.|++.|-=.+ +...-..+..+|||+.++
T Consensus 189 ~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idt----nq~~n~~aavSP~GRFia 244 (420)
T KOG2096|consen 189 DIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDT----NQSSNYDAAVSPDGRFIA 244 (420)
T ss_pred ceEEEeecCCceEEEEecCCCcEEEEecCCceeeeecc----ccccccceeeCCCCcEEE
Confidence 44555445555555555578888888877877553211 333344555556666555
No 101
>PRK14373 hypothetical protein; Provisional
Probab=22.59 E-value=50 Score=19.82 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=10.9
Q ss_pred HHHHHHHhccCcEE
Q psy6595 8 EYAMEAISHAGTCL 21 (108)
Q Consensus 8 eya~~av~~g~~~v 21 (108)
|||.+|+++-+..-
T Consensus 36 ~Ya~~Ai~~~G~~k 49 (73)
T PRK14373 36 QYAVEAVKKYGAFK 49 (73)
T ss_pred HHHHHHHHHhCcHH
Confidence 89999998876543
No 102
>KOG2567|consensus
Probab=21.30 E-value=1.3e+02 Score=21.12 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=18.4
Q ss_pred HHHHHHHHHhccC-cEEEEeeCCeE
Q psy6595 6 QVEYAMEAISHAG-TCLGILAQDGI 29 (108)
Q Consensus 6 qveya~~av~~g~-~~vgi~~~~gv 29 (108)
-++||+++.++++ .||-.+....+
T Consensus 32 ~i~~A~~~L~~~~~r~VVfsg~Gra 56 (179)
T KOG2567|consen 32 LIEFATELLQKGSHRCVVFSGSGRA 56 (179)
T ss_pred HHHHHHHHhhCCCeeEEEEecCCcc
Confidence 3799999999998 66666666544
No 103
>KOG2048|consensus
Probab=21.22 E-value=1.1e+02 Score=26.02 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=37.3
Q ss_pred HhccCcEEEEeeCCeEEEEEeec-----ccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeeh
Q psy6595 14 ISHAGTCLGILAQDGILLAAEKR-----LNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLA 78 (108)
Q Consensus 14 v~~g~~~vgi~~~~gvvl~~~k~-----~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~ 78 (108)
+.-.++..+|.|.|||+..-.-. |.+.+. ...+|++.+.. +.-+.-+.+=+.||++-+
T Consensus 118 i~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~--rq~sRvLslsw-----~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 118 INPENTILAIGCDDGVLYDFSIGPDKITYKRSLM--RQKSRVLSLSW-----NPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred eCCccceEEeecCCceEEEEecCCceEEEEeecc--cccceEEEEEe-----cCCccEEEecccCceEEE
Confidence 34456889999999976663321 222222 34689999983 444455777788886655
No 104
>PRK14382 hypothetical protein; Provisional
Probab=21.12 E-value=60 Score=19.20 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=10.4
Q ss_pred HHHHHHHhccCcE
Q psy6595 8 EYAMEAISHAGTC 20 (108)
Q Consensus 8 eya~~av~~g~~~ 20 (108)
|||.+|+++-+..
T Consensus 32 ~Ya~~Ai~~~G~~ 44 (68)
T PRK14382 32 TYAILSIEKYGAL 44 (68)
T ss_pred HHHHHHHHHhCcH
Confidence 8999999886643
No 105
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=20.56 E-value=61 Score=21.22 Aligned_cols=15 Identities=33% Similarity=0.682 Sum_probs=12.5
Q ss_pred CcchHHHHHHHHHhc
Q psy6595 2 SRLYQVEYAMEAISH 16 (108)
Q Consensus 2 Gr~~qveya~~av~~ 16 (108)
|..|-+|||..||+.
T Consensus 62 g~~~D~eya~~aVks 76 (118)
T PF10167_consen 62 GACYDLEYAISAVKS 76 (118)
T ss_pred cceecHHHHHHHHHH
Confidence 778889999998864
No 106
>COG0759 Uncharacterized conserved protein [Function unknown]
Probab=20.04 E-value=62 Score=20.37 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=10.5
Q ss_pred HHHHHHHhccCcE
Q psy6595 8 EYAMEAISHAGTC 20 (108)
Q Consensus 8 eya~~av~~g~~~ 20 (108)
|||.||++.-+..
T Consensus 37 ~Ya~eAi~~hG~l 49 (92)
T COG0759 37 EYAIEALKKHGLL 49 (92)
T ss_pred HHHHHHHHHhchH
Confidence 8999999887644
Done!