Query psy6595
Match_columns 108
No_of_seqs 122 out of 1141
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 22:08:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nzj_F Proteasome component C1 99.8 9.7E-20 3.3E-24 134.3 5.4 79 1-85 18-96 (288)
2 3h4p_A Proteasome subunit alph 99.8 1.1E-19 3.6E-24 132.5 5.0 78 1-84 22-99 (264)
3 1ryp_A 20S proteasome; multica 99.8 9.8E-20 3.4E-24 130.7 4.3 79 2-86 14-93 (243)
4 1iru_G 20S proteasome; cell cy 99.8 1.8E-19 6.3E-24 130.3 5.3 78 1-84 17-94 (254)
5 1ryp_G 20S proteasome; multica 99.8 2.3E-19 8E-24 129.1 5.6 78 1-84 14-91 (244)
6 1ryp_E 20S proteasome; multica 99.8 2.6E-19 9E-24 128.3 5.7 78 1-84 10-87 (242)
7 1ryp_D 20S proteasome; multica 99.8 2.6E-19 9E-24 128.4 5.2 77 2-84 13-90 (241)
8 1iru_D 20S proteasome; cell cy 99.8 2.2E-19 7.6E-24 129.4 4.3 78 1-84 13-90 (248)
9 1ryp_C 20S proteasome; multica 99.8 3.7E-19 1.3E-23 127.7 5.4 78 1-84 15-93 (244)
10 1iru_B 20S proteasome; cell cy 99.8 3.1E-19 1.1E-23 127.3 4.9 78 1-84 15-92 (233)
11 1yar_A Proteasome alpha subuni 99.8 4.1E-19 1.4E-23 126.7 5.3 77 2-84 19-95 (233)
12 1ryp_F 20S proteasome; multica 99.8 4.9E-19 1.7E-23 126.4 5.2 77 1-85 15-91 (233)
13 1iru_E 20S proteasome; cell cy 99.8 6.5E-19 2.2E-23 126.3 5.5 76 2-83 19-94 (241)
14 1j2p_A Alpha-ring, proteasome 99.8 5.8E-19 2E-23 127.0 5.1 77 2-84 19-95 (246)
15 1iru_C 20S proteasome; cell cy 99.8 5.6E-19 1.9E-23 128.2 4.8 77 2-84 16-93 (261)
16 1ryp_B 20S proteasome; multica 99.7 8.7E-19 3E-23 126.3 5.3 78 1-84 15-92 (250)
17 3h4p_A Proteasome subunit alph 99.7 6.3E-19 2.1E-23 128.4 4.2 75 33-108 8-82 (264)
18 1ryp_A 20S proteasome; multica 99.7 7.1E-19 2.4E-23 126.2 4.4 72 36-108 2-74 (243)
19 1iru_A 20S proteasome; cell cy 99.7 1.1E-18 3.8E-23 125.4 4.9 77 2-84 20-97 (246)
20 1iru_B 20S proteasome; cell cy 99.7 1.1E-18 3.9E-23 124.4 4.2 74 34-108 2-75 (233)
21 1iru_C 20S proteasome; cell cy 99.7 1.5E-18 5.1E-23 126.0 4.8 74 35-108 3-76 (261)
22 3nzj_F Proteasome component C1 99.7 1.5E-18 5.1E-23 128.0 4.7 73 35-108 6-78 (288)
23 1j2p_A Alpha-ring, proteasome 99.7 1.3E-18 4.6E-23 125.1 4.3 76 32-108 3-78 (246)
24 1ryp_D 20S proteasome; multica 99.7 1.9E-18 6.4E-23 123.9 4.8 73 36-108 1-73 (241)
25 1yar_A Proteasome alpha subuni 99.7 1.9E-18 6.4E-23 123.3 4.7 73 34-107 5-77 (233)
26 1iru_E 20S proteasome; cell cy 99.7 2.4E-18 8.1E-23 123.4 5.2 74 34-108 5-78 (241)
27 1iru_F 20S proteasome; cell cy 99.7 2.2E-18 7.4E-23 125.3 4.9 76 1-84 16-91 (263)
28 1ryp_B 20S proteasome; multica 99.7 1.9E-18 6.5E-23 124.6 4.5 73 35-108 3-75 (250)
29 1iru_G 20S proteasome; cell cy 99.7 2.1E-18 7.2E-23 124.7 4.8 73 35-108 5-77 (254)
30 1ryp_G 20S proteasome; multica 99.7 2.8E-18 9.6E-23 123.4 4.8 72 36-108 3-74 (244)
31 1ryp_C 20S proteasome; multica 99.7 3.4E-18 1.2E-22 122.7 5.1 71 36-107 4-75 (244)
32 1iru_D 20S proteasome; cell cy 99.7 2.5E-18 8.5E-23 123.9 4.0 71 37-108 3-73 (248)
33 1ryp_F 20S proteasome; multica 99.7 5.4E-18 1.8E-22 121.0 4.1 71 35-108 3-73 (233)
34 1ryp_E 20S proteasome; multica 99.7 7.2E-18 2.5E-22 120.8 4.7 70 38-108 1-70 (242)
35 1iru_A 20S proteasome; cell cy 99.7 1.2E-17 4E-22 120.1 4.5 72 35-107 7-79 (246)
36 1iru_F 20S proteasome; cell cy 99.7 1.8E-17 6E-22 120.5 4.7 71 35-108 4-74 (263)
37 1q5q_A Proteasome alpha-type s 99.5 4.5E-15 1.5E-19 107.6 3.5 69 2-83 11-80 (259)
38 3mi0_A Proteasome subunit alph 99.4 1E-13 3.5E-18 100.2 4.5 66 6-84 16-81 (248)
39 1q5q_A Proteasome alpha-type s 99.1 1.1E-11 3.8E-16 89.8 2.2 58 43-108 6-64 (259)
40 2jay_A Proteasome; hydrolase; 99.0 5.9E-11 2E-15 87.4 2.0 71 7-84 48-119 (291)
41 1q5r_H Proteasome beta-type su 99.0 7.7E-11 2.6E-15 87.0 0.4 69 10-84 58-127 (294)
42 1ryp_H 20S proteasome; multica 99.0 9.6E-11 3.3E-15 81.7 0.6 68 11-84 3-71 (205)
43 1iru_N 20S proteasome; cell cy 98.9 1.3E-10 4.6E-15 81.7 0.1 69 11-85 2-71 (219)
44 3nzj_H Proteasome component PU 98.9 3.4E-10 1.2E-14 82.2 2.0 69 10-84 22-91 (261)
45 1ryp_N 20S proteasome; multica 98.9 3.1E-10 1E-14 80.7 0.4 70 11-86 2-72 (233)
46 1yar_H Proteasome beta subunit 98.9 6.5E-10 2.2E-14 78.3 1.9 67 12-84 3-70 (217)
47 1g0u_M Proteasome component PR 98.8 3.3E-10 1.1E-14 82.2 -0.4 74 7-86 31-105 (266)
48 3nzj_K Proteasome component PR 98.8 8.2E-10 2.8E-14 81.2 1.7 71 8-84 66-137 (287)
49 3mi0_A Proteasome subunit alph 98.8 2.8E-09 9.4E-14 76.9 3.6 49 52-108 16-64 (248)
50 1iru_M 20S proteasome; cell cy 98.8 1.8E-09 6.1E-14 75.5 1.7 65 14-84 6-71 (213)
51 1iru_J 20S proteasome; cell cy 98.7 1.9E-09 6.4E-14 75.0 0.7 65 14-84 5-70 (205)
52 2z3b_A ATP-dependent protease 98.6 7.4E-09 2.5E-13 71.0 2.0 67 15-87 3-72 (180)
53 1ryp_M 20S proteasome; multica 98.6 7.1E-09 2.4E-13 73.1 1.5 66 13-84 5-71 (222)
54 1j2q_H Proteasome beta subunit 98.5 2.5E-08 8.7E-13 69.1 2.2 61 18-84 1-62 (202)
55 3h4p_a Proteasome subunit beta 98.5 1.2E-08 4.2E-13 71.8 0.5 63 17-85 1-64 (219)
56 1iru_H 20S proteasome; cell cy 98.5 2.4E-08 8.2E-13 69.4 2.0 62 18-85 1-63 (205)
57 1g3k_A ATP-dependent protease 98.5 2.5E-08 8.6E-13 67.8 2.0 62 18-85 1-64 (174)
58 1ryp_J 20S proteasome; multica 98.5 3.4E-08 1.2E-12 68.6 2.1 64 14-84 5-69 (204)
59 1iru_K 20S proteasome; cell cy 98.5 4.3E-08 1.5E-12 67.9 2.5 61 18-84 2-63 (201)
60 1m4y_A ATP-dependent protease 98.5 3.5E-08 1.2E-12 66.9 2.0 63 18-86 1-65 (171)
61 3unf_N Proteasome subunit beta 98.5 2.4E-08 8.4E-13 69.0 0.9 63 18-86 1-64 (199)
62 1iru_L 20S proteasome; cell cy 98.5 3E-08 1E-12 68.9 1.2 60 18-83 1-61 (204)
63 1ryp_L 20S proteasome; multica 98.5 3.3E-08 1.1E-12 69.1 1.2 61 18-84 1-62 (212)
64 1ryp_K 20S proteasome; multica 98.5 4.4E-08 1.5E-12 67.6 1.6 61 18-84 2-63 (198)
65 1q5q_H Proteasome beta-type su 98.4 5E-08 1.7E-12 69.4 1.7 61 18-84 1-62 (235)
66 1ryp_I 20S proteasome; multica 98.4 8.8E-08 3E-12 67.6 1.7 61 18-84 1-62 (222)
67 1q5r_H Proteasome beta-type su 98.4 1.2E-07 4.2E-12 69.8 2.5 51 56-107 58-109 (294)
68 1iru_I 20S proteasome; cell cy 98.3 1.6E-07 5.4E-12 66.8 2.4 61 18-84 1-62 (234)
69 3unf_H Proteasome subunit beta 98.3 1.3E-07 4.3E-12 67.5 1.8 61 18-84 1-62 (234)
70 2jay_A Proteasome; hydrolase; 98.3 3E-07 1E-11 67.6 3.4 53 53-107 48-101 (291)
71 1ryp_H 20S proteasome; multica 98.3 2.9E-07 9.9E-12 63.9 2.9 50 57-107 3-53 (205)
72 1iru_N 20S proteasome; cell cy 98.2 4.5E-07 1.5E-11 63.5 2.3 49 58-107 3-52 (219)
73 3nzj_H Proteasome component PU 98.2 6.1E-07 2.1E-11 65.0 2.9 50 57-107 23-73 (261)
74 3nzj_K Proteasome component PR 98.2 1.1E-06 3.6E-11 64.6 3.6 53 55-108 67-120 (287)
75 1ryp_N 20S proteasome; multica 98.1 8.3E-07 2.8E-11 62.8 2.5 49 58-107 3-52 (233)
76 1yar_H Proteasome beta subunit 98.1 1.1E-06 3.8E-11 61.6 3.1 48 59-107 4-52 (217)
77 1iru_M 20S proteasome; cell cy 98.1 1.5E-06 5.1E-11 60.5 3.1 47 61-107 7-53 (213)
78 1g0u_M Proteasome component PR 98.1 6.6E-07 2.3E-11 64.7 1.3 55 52-107 30-85 (266)
79 1iru_J 20S proteasome; cell cy 98.1 1.9E-06 6.5E-11 59.7 3.5 48 61-108 6-53 (205)
80 1ryp_M 20S proteasome; multica 98.0 2.7E-06 9.4E-11 59.8 2.7 48 60-107 6-53 (222)
81 3h4p_a Proteasome subunit beta 97.9 7.8E-06 2.7E-10 57.4 3.6 45 63-108 1-46 (219)
82 1ryp_J 20S proteasome; multica 97.9 7.3E-06 2.5E-10 56.7 3.2 46 61-107 6-51 (204)
83 2z3b_A ATP-dependent protease 97.9 9.3E-06 3.2E-10 55.4 3.5 46 61-107 3-51 (180)
84 1iru_L 20S proteasome; cell cy 97.8 1.5E-05 5.3E-10 55.0 3.6 44 64-108 1-45 (204)
85 1iru_H 20S proteasome; cell cy 97.8 1.4E-05 4.9E-10 55.2 3.1 43 64-107 1-44 (205)
86 1ryp_L 20S proteasome; multica 97.8 1.9E-05 6.5E-10 54.9 3.6 44 64-108 1-45 (212)
87 1j2q_H Proteasome beta subunit 97.7 1.6E-05 5.3E-10 54.9 3.1 44 64-108 1-45 (202)
88 3unf_H Proteasome subunit beta 97.7 1.6E-05 5.5E-10 56.5 3.2 44 64-107 1-44 (234)
89 3unf_N Proteasome subunit beta 97.7 1.9E-05 6.4E-10 54.3 3.1 44 64-108 1-45 (199)
90 1ryp_K 20S proteasome; multica 97.7 1.7E-05 5.8E-10 54.5 2.8 44 64-107 2-45 (198)
91 1ryp_I 20S proteasome; multica 97.7 1.9E-05 6.6E-10 55.4 3.0 44 64-107 1-44 (222)
92 1iru_K 20S proteasome; cell cy 97.7 2.3E-05 7.8E-10 54.0 2.9 43 64-107 2-45 (201)
93 1m4y_A ATP-dependent protease 97.7 2.6E-05 8.9E-10 52.5 3.1 43 64-107 1-45 (171)
94 1iru_I 20S proteasome; cell cy 97.7 2.7E-05 9.2E-10 55.2 3.2 44 64-107 1-44 (234)
95 1q5q_H Proteasome beta-type su 97.7 2.4E-05 8.2E-10 55.4 3.0 43 64-107 1-44 (235)
96 1g3k_A ATP-dependent protease 97.6 3E-05 1E-09 52.5 3.1 43 64-107 1-45 (174)
97 3s0r_A De novo designed helica 51.8 7 0.00024 18.2 1.3 12 6-17 6-17 (30)
98 1zi0_A DNA gyrase subunit A; b 30.0 25 0.00086 25.1 1.9 38 17-54 32-69 (307)
99 3l6v_A GYRA, DNA gyrase subuni 28.6 35 0.0012 25.3 2.6 38 17-54 36-73 (370)
100 3uc1_A DNA gyrase subunit A; D 23.9 20 0.00068 26.1 0.4 37 18-54 33-69 (327)
101 3jx9_A Putative phosphoheptose 21.3 68 0.0023 21.2 2.7 20 6-25 93-112 (170)
102 1wp5_A Topoisomerase IV; broke 20.1 34 0.0012 24.7 1.0 38 17-54 29-66 (323)
No 1
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.78 E-value=9.7e-20 Score=134.31 Aligned_cols=79 Identities=29% Similarity=0.449 Sum_probs=73.7
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
.|||||||||+|||++|+|+|||+++|||||+++++....+.+.+...||++|+ +++.++++|..+|++.|+..
T Consensus 18 ~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~------d~i~~~~aG~~aD~~~l~~~ 91 (288)
T 3nzj_F 18 DGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVD------RHIGCVYSGLIPDGRHLVNR 91 (288)
T ss_dssp TSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEET------TTEEEEEEECHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEc------CCEEEEecCcHHHHHHHHHH
Confidence 499999999999999999999999999999999999999988888889999999 99999999999999999987
Q ss_pred hhhcc
Q psy6595 81 KRNTN 85 (108)
Q Consensus 81 ~r~~~ 85 (108)
.|...
T Consensus 92 lr~e~ 96 (288)
T 3nzj_F 92 GREEA 96 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 2
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.78 E-value=1.1e-19 Score=132.50 Aligned_cols=78 Identities=31% Similarity=0.569 Sum_probs=71.9
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
-|||||||||+||+++|+|+|||+++|||||+++++...++...+...||++|+ +++.++++|..+|++.|+..
T Consensus 22 ~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~------d~i~~~~aG~~aD~~~l~~~ 95 (264)
T 3h4p_A 22 EGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQID------DHVAAATSGLVADARVLIDR 95 (264)
T ss_dssp SSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEE------TTEEEEEEECSHHHHHHHTT
T ss_pred CCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEec------CcEEEEeccchHHHHHHHHH
Confidence 399999999999999999999999999999999999888877777789999999 99999999999999999877
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 96 ~r~~ 99 (264)
T 3h4p_A 96 ARLE 99 (264)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 3
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.78 E-value=9.8e-20 Score=130.74 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=72.6
Q ss_pred CcchHHHHHHHHHhc-cCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 2 SRLYQVEYAMEAISH-AGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 2 Gr~~qveya~~av~~-g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
|||||||||+||+++ |+++||++++|||||+++++...++...+...||++|+ +++.++.+|..+|.+.|+..
T Consensus 14 Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~ 87 (243)
T 1ryp_A 14 GRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCIS------RTIGMVVNGPIPDARNAALR 87 (243)
T ss_dssp SCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECS------SSCEEEEESCHHHHHHHHHH
T ss_pred CeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEEC------CCEEEEEEecHHHHHHHHHH
Confidence 999999999999999 99999999999999999999887877767789999999 99999999999999999987
Q ss_pred hhhccc
Q psy6595 81 KRNTNK 86 (108)
Q Consensus 81 ~r~~~~ 86 (108)
.|....
T Consensus 88 ~r~~~~ 93 (243)
T 1ryp_A 88 AKAEAA 93 (243)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 775433
No 4
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.77 E-value=1.8e-19 Score=130.28 Aligned_cols=78 Identities=32% Similarity=0.488 Sum_probs=72.7
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
-|||||||||+||+++|+|+|||+++|||||+++++....+.+.+...||++|+ +++.++++|..+|.+.|+..
T Consensus 17 ~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~------~~i~~~~aG~~aD~~~l~~~ 90 (254)
T 1iru_G 17 DGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVD------RHVGMAVAGLLADARSLADI 90 (254)
T ss_dssp TSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEE------TTEEEEEEECHHHHHHHHHH
T ss_pred CCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEEC------CCEEEEEecChHHHHHHHHH
Confidence 399999999999999999999999999999999999998888877789999999 99999999999999999877
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 91 ~~~~ 94 (254)
T 1iru_G 91 AREE 94 (254)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 5
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.77 E-value=2.3e-19 Score=129.09 Aligned_cols=78 Identities=29% Similarity=0.456 Sum_probs=72.8
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
.|||||||||+||+++|+|+|||+++|||||+++++....+.+.+...||++|+ +++.++++|..+|...|+..
T Consensus 14 ~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~------~~i~~~~aG~~aD~~~l~~~ 87 (244)
T 1ryp_G 14 DGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVD------RHIGCVYSGLIPDGRHLVNR 87 (244)
T ss_dssp TSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEET------TTEEEEEEECHHHHHHHHHH
T ss_pred CCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEec------CCEEEEEcccHHHHHHHHHH
Confidence 399999999999999999999999999999999999999988888789999999 99999999999999999877
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 88 ~~~~ 91 (244)
T 1ryp_G 88 GREE 91 (244)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 6
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.77 E-value=2.6e-19 Score=128.34 Aligned_cols=78 Identities=28% Similarity=0.513 Sum_probs=71.8
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
-|||||||||+||+++|+++|||+++|||||+++++....+.+.+...||++|+ +++.++++|..+|...|+..
T Consensus 10 ~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~ 83 (242)
T 1ryp_E 10 EGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEID------RHIGCAMSGLTADARSMIEH 83 (242)
T ss_dssp TSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEE------TTEEEEEEESGGGHHHHHHH
T ss_pred CCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEc------CCEEEEEeecHHHHHHHHHH
Confidence 399999999999999999999999999999999999888887766779999999 99999999999999999877
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 84 ~~~~ 87 (242)
T 1ryp_E 84 ARTA 87 (242)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 7
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.77 E-value=2.6e-19 Score=128.36 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=72.0
Q ss_pred CcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccC-ccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 2 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 2 Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s-~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
|||||||||+||+++|+|+||++++|||||+++++....+.+.+ ...||++|+ +++.++++|..+|...|...
T Consensus 13 Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~ 86 (241)
T 1ryp_D 13 GHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKID------SHVVLSFSGLNADSRILIEK 86 (241)
T ss_dssp TBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEE------TTEEEEEEECHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEec------CCEEEEEeecHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888777 679999999 99999999999999999977
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 87 ~~~~ 90 (241)
T 1ryp_D 87 ARVE 90 (241)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 8
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.76 E-value=2.2e-19 Score=129.40 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=71.7
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
-|||||||||+||+++|+|+||++++|||||+++++....+...+...||++|+ +++.++++|..+|...|+..
T Consensus 13 ~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~------~~i~~~~aG~~aD~~~l~~~ 86 (248)
T 1iru_D 13 DGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALD------DNVCMAFAGLTADARIVINR 86 (248)
T ss_dssp TSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESS------SSCEEEEEECHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEc------CCEEEEEeecHHHHHHHHHH
Confidence 399999999999999999999999999999999999888876666779999999 99999999999999999977
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 87 ~~~~ 90 (248)
T 1iru_D 87 ARVE 90 (248)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 9
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.76 E-value=3.7e-19 Score=127.68 Aligned_cols=78 Identities=40% Similarity=0.623 Sum_probs=72.0
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccc-cCccCCeeeehhHHHhhcccceeeeEeeCCeeeehh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSF-LPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAA 79 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~-~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~ 79 (108)
-|||||||||+||+++|+++|||+++|||||+++++....+.+ .+...||++|+ +++.++++|..+|...|..
T Consensus 15 ~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~ 88 (244)
T 1ryp_C 15 EGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLN------DKIAVAVAGLTADAEILIN 88 (244)
T ss_dssp TSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESS------SSEEEEEEECHHHHHHHHH
T ss_pred CCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEEC------CCEEEEEEEcHHHHHHHHH
Confidence 3999999999999999999999999999999999998888877 66779999999 9999999999999999997
Q ss_pred hhhhc
Q psy6595 80 EKRNT 84 (108)
Q Consensus 80 ~~r~~ 84 (108)
..|..
T Consensus 89 ~~~~~ 93 (244)
T 1ryp_C 89 TARIH 93 (244)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 10
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.76 E-value=3.1e-19 Score=127.34 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=71.6
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
-|||||||||+||+++|+++|||+++|||||+++++...++...+...||++|+ +++.++++|..+|...|...
T Consensus 15 ~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~ 88 (233)
T 1iru_B 15 SGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPIT------KHIGLVYSGMGPDYRVLVHR 88 (233)
T ss_dssp TSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESS------SSEEEEEEECHHHHHHHHHH
T ss_pred CCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEEC------CCEEEEEEEccHHHHHHHHH
Confidence 399999999999999999999999999999999999887777767789999999 99999999999999999977
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 89 ~~~~ 92 (233)
T 1iru_B 89 ARKL 92 (233)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 11
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.76 E-value=4.1e-19 Score=126.73 Aligned_cols=77 Identities=26% Similarity=0.413 Sum_probs=71.1
Q ss_pred CcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhh
Q psy6595 2 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEK 81 (108)
Q Consensus 2 Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~ 81 (108)
|||||||||+||+++|+++|||+++|||||+++++...++...+...||++|+ +++.++.+|..+|...|....
T Consensus 19 Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~ 92 (233)
T 1yar_A 19 GRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLID------DYVAAVTSGLVADARVLVDFA 92 (233)
T ss_dssp SCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEE------TTEEEEEEEBHHHHHHHHHHH
T ss_pred CeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEec------CCEEEEEeeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888877666779999999 999999999999999998776
Q ss_pred hhc
Q psy6595 82 RNT 84 (108)
Q Consensus 82 r~~ 84 (108)
|..
T Consensus 93 ~~~ 95 (233)
T 1yar_A 93 RIS 95 (233)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 12
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.76 E-value=4.9e-19 Score=126.41 Aligned_cols=77 Identities=31% Similarity=0.460 Sum_probs=70.1
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
-|||||||||+||+++|+|+||++++|||||+++++....+. .+..||++|+ +++.++++|..+|...|+..
T Consensus 15 ~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~ 86 (233)
T 1ryp_F 15 TGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCD------EHMGLSLAGLAPDARVLSNY 86 (233)
T ss_dssp TSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEE------TTEEEEEEECHHHHHHHHHH
T ss_pred CCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEc------CCEEEEEEechHHHHHHHHH
Confidence 399999999999999999999999999999999998877765 4779999999 99999999999999999977
Q ss_pred hhhcc
Q psy6595 81 KRNTN 85 (108)
Q Consensus 81 ~r~~~ 85 (108)
.|...
T Consensus 87 ~~~~~ 91 (233)
T 1ryp_F 87 LRQQC 91 (233)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 13
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.75 E-value=6.5e-19 Score=126.32 Aligned_cols=76 Identities=32% Similarity=0.536 Sum_probs=71.0
Q ss_pred CcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhh
Q psy6595 2 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEK 81 (108)
Q Consensus 2 Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~ 81 (108)
|||||||||+||+++|+++|||+++||||++++++....+.+.+...||++|+ +++.++.+|..+|...|+...
T Consensus 19 Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~ 92 (241)
T 1iru_E 19 GRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEID------AHIGCAMSGLIADAKTLIDKA 92 (241)
T ss_dssp SCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEE------TTEEEEEEECHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEc------CCEEEEEeeChHHHHHHHHHH
Confidence 99999999999999999999999999999999999888887766779999999 999999999999999998776
Q ss_pred hh
Q psy6595 82 RN 83 (108)
Q Consensus 82 r~ 83 (108)
+.
T Consensus 93 ~~ 94 (241)
T 1iru_E 93 RV 94 (241)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 14
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.75 E-value=5.8e-19 Score=127.00 Aligned_cols=77 Identities=30% Similarity=0.530 Sum_probs=71.6
Q ss_pred CcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhh
Q psy6595 2 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEK 81 (108)
Q Consensus 2 Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~ 81 (108)
|||||||||+||+++|+|+|||+++|||||+++++...++...+...||++|+ +++.++++|..+|...|+...
T Consensus 19 Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~------~~i~~~~aG~~aD~~~l~~~~ 92 (246)
T 1j2p_A 19 GRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKID------EHICAATSGLVADARVLIDRA 92 (246)
T ss_dssp SCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECS------SSEEEEEEECHHHHHHHHHHH
T ss_pred CeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEEC------CCEEEEEeEccHHHHHHHHHH
Confidence 99999999999999999999999999999999999888887767789999999 999999999999999999777
Q ss_pred hhc
Q psy6595 82 RNT 84 (108)
Q Consensus 82 r~~ 84 (108)
|..
T Consensus 93 ~~~ 95 (246)
T 1j2p_A 93 RIE 95 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 15
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.75 E-value=5.6e-19 Score=128.18 Aligned_cols=77 Identities=45% Similarity=0.675 Sum_probs=71.7
Q ss_pred CcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCc-cCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 2 SRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 2 Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~-~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
|||||||||+||+++|+|+|||+++|||||+++++....+.+.+. ..||++|+ +++.++++|..+|...|+..
T Consensus 16 Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~------~~i~~~~aG~~aD~~~l~~~ 89 (261)
T 1iru_C 16 GRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLN------EDMACSVAGITSDANVLTNE 89 (261)
T ss_dssp SCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECS------SSEEEEEEECHHHHHHHHHH
T ss_pred CeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEec------CCEEEEEeEcHHHHHHHHHH
Confidence 999999999999999999999999999999999999888888776 79999999 99999999999999999877
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 90 ~~~~ 93 (261)
T 1iru_C 90 LRLI 93 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 16
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.75 E-value=8.7e-19 Score=126.34 Aligned_cols=78 Identities=24% Similarity=0.421 Sum_probs=71.1
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
-|||||||||+||+++|+++||++++|||||+++++...++...+...||++|+ +++.++++|..+|...|...
T Consensus 15 ~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~ 88 (250)
T 1ryp_B 15 SGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLT------PDIGAVYSGMGPDYRVLVDK 88 (250)
T ss_dssp TSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEE------TTEEEEEEECHHHHHHHHHH
T ss_pred CCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEEC------CCEEEEeeeCHHHHHHHHHH
Confidence 399999999999999999999999999999999999877776667789999999 99999999999999999877
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 89 ~~~~ 92 (250)
T 1ryp_B 89 SRKV 92 (250)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 17
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=6.3e-19 Score=128.41 Aligned_cols=75 Identities=35% Similarity=0.593 Sum_probs=62.9
Q ss_pred EeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 33 AEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 33 ~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
....||+.+++|||+|||||+|||++|++++++++|++.+||+||+..+|.++++...++. +||+.|++|++|++
T Consensus 8 ~~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~-~KI~~i~d~i~~~~ 82 (264)
T 3h4p_A 8 PPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSI-EKIFQIDDHVAAAT 82 (264)
T ss_dssp --------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTC-CCEEEEETTEEEEE
T ss_pred CccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCcc-ccEEEecCcEEEEe
Confidence 3457999999999999999999999999999999999999999999999998888776666 99999999999863
No 18
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=99.74 E-value=7.1e-19 Score=126.24 Aligned_cols=72 Identities=25% Similarity=0.464 Sum_probs=67.5
Q ss_pred cccccccccCccCCeeeehhHHHhhcc-cceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 36 RLNQDFSFLPHMSRLYQVEYAMEAISH-AGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 36 ~~~~~l~~~s~~gki~qieya~~av~~-~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.||+.+++|||+|||||+|||+||+++ +++++|++.+||+||+.++|.+.++...++. +||+.|++|++|++
T Consensus 2 ~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~-~Ki~~i~~~i~~~~ 74 (243)
T 1ryp_A 2 GYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTV-SYIFCISRTIGMVV 74 (243)
T ss_dssp GGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGC-CSEEECSSSCEEEE
T ss_pred CCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcC-CceEEECCCEEEEE
Confidence 589999999999999999999999999 9999999999999999999988888887766 99999999999863
No 19
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.74 E-value=1.1e-18 Score=125.40 Aligned_cols=77 Identities=22% Similarity=0.387 Sum_probs=71.3
Q ss_pred CcchHHHHHHHHHhc-cCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 2 SRLYQVEYAMEAISH-AGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 2 Gr~~qveya~~av~~-g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
|||||||||+||+++ |+|+||++++|||||+++++...++...+...||++|+ +++.++++|..+|...|+..
T Consensus 20 Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~ 93 (246)
T 1iru_A 20 GRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKIT------ENIGCVMTGMTADSRSQVQR 93 (246)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESS------SSCEEEEEECHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEEC------CCEEEEEeccHHHHHHHHHH
Confidence 999999999999999 99999999999999999998877777767789999999 99999999999999999977
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 94 ~~~~ 97 (246)
T 1iru_A 94 ARYE 97 (246)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 20
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=99.73 E-value=1.1e-18 Score=124.43 Aligned_cols=74 Identities=26% Similarity=0.490 Sum_probs=68.4
Q ss_pred eecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 34 EKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 34 ~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
...||+.+++|||+||+||+|||++|++++++++|++.+||++|+.++|.++++...++. +||+.|++|+++++
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~-~Ki~~i~~~i~~~~ 75 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSV-HKVEPITKHIGLVY 75 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTC-CSSEESSSSEEEEE
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccC-CeEEEECCCEEEEE
Confidence 357999999999999999999999999999999999999999999999988888777666 99999999999863
No 21
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=99.73 E-value=1.5e-18 Score=125.95 Aligned_cols=74 Identities=59% Similarity=0.890 Sum_probs=69.1
Q ss_pred ecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 35 k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
+.||+.+++|||+|||||+|||++|++++++++|++.+||+||+.++|.++.+++.....+||+.|++|+++++
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~ 76 (261)
T 1iru_C 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSV 76 (261)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEE
T ss_pred CccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEE
Confidence 47999999999999999999999999999999999999999999999999999988763499999999999863
No 22
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=99.73 E-value=1.5e-18 Score=127.96 Aligned_cols=73 Identities=30% Similarity=0.408 Sum_probs=69.1
Q ss_pred ecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 35 k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
..|++.+++|||+||+||+|||++|++++++++|++.+||+||+.++|.++++++.++. +||+.|++||+|++
T Consensus 6 ~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~-~KI~~I~d~i~~~~ 78 (288)
T 3nzj_F 6 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKN-VKIQVVDRHIGCVY 78 (288)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCS-CCCEEETTTEEEEE
T ss_pred CCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCcccccc-ceEEEEcCCEEEEe
Confidence 46999999999999999999999999999999999999999999999999999988776 99999999999863
No 23
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=99.73 E-value=1.3e-18 Score=125.10 Aligned_cols=76 Identities=36% Similarity=0.604 Sum_probs=68.8
Q ss_pred EEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 32 AAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 32 ~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
++...||+.+++|||+|||||+|||++|++++++++|++.+||++|+.++|.+.++.+.++. +||+.|++|+++++
T Consensus 3 ~~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~-~KI~~i~~~i~~~~ 78 (246)
T 1j2p_A 3 LPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTI-EKIYKIDEHICAAT 78 (246)
T ss_dssp -CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGC-CSEEECSSSEEEEE
T ss_pred ccccCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCcc-CcEEEECCCEEEEE
Confidence 34458999999999999999999999999999999999999999999999998888776655 99999999999863
No 24
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=99.73 E-value=1.9e-18 Score=123.90 Aligned_cols=73 Identities=26% Similarity=0.461 Sum_probs=67.4
Q ss_pred cccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 36 RLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 36 ~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.||+.+++|||+||+||+|||++|++++++++|++.+||+||+.++|.+..+++.+...+||+.|++|+++++
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~ 73 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSF 73 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEE
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEE
Confidence 4899999999999999999999999999999999999999999999999999887623399999999999863
No 25
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.73 E-value=1.9e-18 Score=123.29 Aligned_cols=73 Identities=29% Similarity=0.533 Sum_probs=61.5
Q ss_pred eecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 34 EKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 34 ~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
...||+.+++|||+||+||+|||++|++++++++|++.+||++|+.++|.++++...++. +||+.|++|++++
T Consensus 5 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~-~Ki~~i~~~i~~~ 77 (233)
T 1yar_A 5 QMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSI-EKIQLIDDYVAAV 77 (233)
T ss_dssp --------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTC-CSEEEEETTEEEE
T ss_pred cccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCccccccccc-CeEEEecCCEEEE
Confidence 357999999999999999999999999999999999999999999999998888776666 9999999999986
No 26
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=99.73 E-value=2.4e-18 Score=123.39 Aligned_cols=74 Identities=31% Similarity=0.518 Sum_probs=66.8
Q ss_pred eecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 34 EKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 34 ~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
...||+.+++|||+||+||+|||++|++++++++|++.+||+||+.++|.++.+.+.++. +||+.|++|+++++
T Consensus 5 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~-~Ki~~i~~~i~~~~ 78 (241)
T 1iru_E 5 RSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI-EKIVEIDAHIGCAM 78 (241)
T ss_dssp ---CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSC-CSEEEEETTEEEEE
T ss_pred cCCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCcccc-ceEEEEcCCEEEEE
Confidence 357999999999999999999999999999999999999999999999999998885555 99999999999863
No 27
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.73 E-value=2.2e-18 Score=125.34 Aligned_cols=76 Identities=29% Similarity=0.496 Sum_probs=69.7
Q ss_pred CCcchHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 1 MSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 1 ~Gr~~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
.|||||||||+||+++|+|+|||+++|||||+++++....+. .+..||++|+ +++.++++|..+|.+.|+..
T Consensus 16 ~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~------~~i~~~~aG~~aD~~~l~~~ 87 (263)
T 1iru_F 16 QGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVD------NHIGISIAGLTADARLLCNF 87 (263)
T ss_dssp TSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEE------TTEEEEEEECHHHHHHHHHH
T ss_pred CCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEc------CCEEEEEeCCHHHHHHHHHH
Confidence 399999999999999999999999999999999999887764 4679999999 99999999999999999977
Q ss_pred hhhc
Q psy6595 81 KRNT 84 (108)
Q Consensus 81 ~r~~ 84 (108)
.|..
T Consensus 88 ~~~~ 91 (263)
T 1iru_F 88 MRQE 91 (263)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 28
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=99.73 E-value=1.9e-18 Score=124.55 Aligned_cols=73 Identities=26% Similarity=0.425 Sum_probs=67.6
Q ss_pred ecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 35 k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
+.||+.+++|||+||+||+|||++|++++++++|++.+||+||+.++|.+.++...++. +||+.|++|+++++
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~-~Ki~~i~~~i~~~~ 75 (250)
T 1ryp_B 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETL-SKVSLLTPDIGAVY 75 (250)
T ss_dssp CCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGC-CSSEEEETTEEEEE
T ss_pred CcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCccc-CceEEECCCEEEEe
Confidence 47999999999999999999999999999999999999999999999988888776665 99999999999863
No 29
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=99.73 E-value=2.1e-18 Score=124.71 Aligned_cols=73 Identities=27% Similarity=0.545 Sum_probs=68.5
Q ss_pred ecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 35 k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
..||+.+++|||+|||||+|||++|++++++++|++.+||+||+.++|.++.+++.++. +||+.|++|+++++
T Consensus 5 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~-~KI~~i~~~i~~~~ 77 (254)
T 1iru_G 5 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSN-KRLFNVDRHVGMAV 77 (254)
T ss_dssp SSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTT-CCEEEEETTEEEEE
T ss_pred cccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcC-CcEEEECCCEEEEE
Confidence 46999999999999999999999999999999999999999999999999999987655 99999999999863
No 30
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=99.72 E-value=2.8e-18 Score=123.44 Aligned_cols=72 Identities=31% Similarity=0.414 Sum_probs=68.4
Q ss_pred cccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 36 RLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 36 ~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.||+.+++|||+||+||+|||++|++++++++|++.+||+||+.++|.++.+++.++. +||+.|++|+++++
T Consensus 3 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~-~KI~~i~~~i~~~~ 74 (244)
T 1ryp_G 3 GYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKN-VKIQVVDRHIGCVY 74 (244)
T ss_dssp CTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTS-CCCEEETTTEEEEE
T ss_pred CccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCcccccc-CceEEecCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999988777 99999999999863
No 31
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=99.72 E-value=3.4e-18 Score=122.68 Aligned_cols=71 Identities=51% Similarity=0.852 Sum_probs=67.1
Q ss_pred cccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccc-cCccccceeeeccceeEe
Q psy6595 36 RLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLD-EGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 36 ~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~-~~~~~~kI~~I~~~ig~~ 107 (108)
.||+.+++|||+||+||+|||++|++++++++|++.+||+||+.++|.++.+.+ .++. +||+.|++|++++
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~-~Ki~~i~~~i~~~ 75 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTST-EKLYKLNDKIAVA 75 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCC-SSEEESSSSEEEE
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCC-CcEEEECCCEEEE
Confidence 799999999999999999999999999999999999999999999999999888 5555 9999999999986
No 32
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=99.72 E-value=2.5e-18 Score=123.90 Aligned_cols=71 Identities=32% Similarity=0.516 Sum_probs=66.4
Q ss_pred ccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 37 LNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 37 ~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
||+.+++|||+|||||+|||++|++++++++|++.+||+||+.++|.++++...++. +||+.|++|+++++
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~-~KI~~i~~~i~~~~ 73 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTV-RKICALDDNVCMAF 73 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGG-CSEEESSSSCEEEE
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCC-CcEEEEcCCEEEEE
Confidence 899999999999999999999999999999999999999999999998888776655 99999999999863
No 33
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=99.70 E-value=5.4e-18 Score=121.00 Aligned_cols=71 Identities=30% Similarity=0.454 Sum_probs=65.3
Q ss_pred ecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 35 k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
+.||+.+++|||+||+||+|||++|++++++++|++.+||+||+.++|.+.++.+ +. +||+.|++|+++++
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~--~~-~Ki~~i~~~i~~~~ 73 (233)
T 1ryp_F 3 NNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSS--YQ-KKIIKCDEHMGLSL 73 (233)
T ss_dssp HHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTBC--CC-CCEEEEETTEEEEE
T ss_pred CcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEecccccccc--cc-CcEEEEcCCEEEEE
Confidence 3689999999999999999999999999999999999999999999999888764 34 99999999999863
No 34
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=99.70 E-value=7.2e-18 Score=120.84 Aligned_cols=70 Identities=34% Similarity=0.592 Sum_probs=64.5
Q ss_pred cccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 38 NQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 38 ~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
|+.+++|||+|||||+|||++|++++++++|++.+||+||+.++|.++.+.+.++. +||+.|++|+++++
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~-~Ki~~i~~~i~~~~ 70 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSI-EKIVEIDRHIGCAM 70 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGC-CCEEEEETTEEEEE
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccC-CceEEEcCCEEEEE
Confidence 46788999999999999999999999999999999999999999999998885555 99999999999863
No 35
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=99.69 E-value=1.2e-17 Score=120.06 Aligned_cols=72 Identities=26% Similarity=0.539 Sum_probs=67.4
Q ss_pred ecccccccccCccCCeeeehhHHHhhcc-cceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 35 KRLNQDFSFLPHMSRLYQVEYAMEAISH-AGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 35 k~~~~~l~~~s~~gki~qieya~~av~~-~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
..||+.+++|||+||+||+|||++|+++ +++++|++.+|+++|+.++|.+.++...++. +||+.|++|++++
T Consensus 7 ~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~-~Ki~~i~~~i~~~ 79 (246)
T 1iru_A 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTV-THLFKITENIGCV 79 (246)
T ss_dssp CTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGC-CSEEESSSSCEEE
T ss_pred CCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCcc-CceEEECCCEEEE
Confidence 5799999999999999999999999999 9999999999999999999988888777666 9999999999986
No 36
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=99.68 E-value=1.8e-17 Score=120.54 Aligned_cols=71 Identities=25% Similarity=0.448 Sum_probs=65.8
Q ss_pred ecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 35 KRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 35 k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
+.||+.+++|||+|||||+|||++|++++++++|++.+||+||+.++|.+..+.+ +. +||+.|++|+++++
T Consensus 4 ~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~~--~~-~KI~~i~~~i~~~~ 74 (263)
T 1iru_F 4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAA--HQ-KKILHVDNHIGISI 74 (263)
T ss_dssp CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTBC--CC-CCEEEEETTEEEEE
T ss_pred CCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEeccccccccc--ch-hcEEEEcCCEEEEE
Confidence 5799999999999999999999999999999999999999999999999888754 34 99999999999863
No 37
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.52 E-value=4.5e-15 Score=107.65 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=62.4
Q ss_pred Ccc-hHHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhh
Q psy6595 2 SRL-YQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAE 80 (108)
Q Consensus 2 Gr~-~qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~ 80 (108)
|++ .|||||+||+++|+++|||+++|||||+++++ .+...||++|+ +++.++++|..+|...|+..
T Consensus 11 ~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~------d~i~~~~aG~~aD~~~l~~~ 77 (259)
T 1q5q_A 11 QIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKVSELY------DRLGFAAVGKYNEFENLRRA 77 (259)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-------CSSSCSEEEEE------TTEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeC------CCEEEEEccCHHHHHHHHHH
Confidence 567 49999999999999999999999999999987 25678999999 99999999999999999985
Q ss_pred hhh
Q psy6595 81 KRN 83 (108)
Q Consensus 81 ~r~ 83 (108)
.|.
T Consensus 78 ~~~ 80 (259)
T 1q5q_A 78 GIV 80 (259)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 38
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=99.42 E-value=1e-13 Score=100.16 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=59.5
Q ss_pred HHHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 6 QVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 6 qveya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
++|||+||+++|+|+|||+++|||||+++++ .....||++|+ ++++++++|..+|.+.|..+.+..
T Consensus 16 r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~------d~i~~~~aG~~aD~~~l~~~~~~~ 81 (248)
T 3mi0_A 16 RSELARKGIARAKSVVALAYAGGVLFVAENP-------SRSLQKISELY------DRVGFAAAGKFNEFDNLRRGGIQF 81 (248)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECC-------CSSSCSEEEEE------TTEEEEEEECHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEEC------CCEEEEEccCHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999987 24678999999 999999999999999887666543
No 39
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=99.14 E-value=1.1e-11 Score=89.77 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=50.0
Q ss_pred ccCccCCee-eehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 43 FLPHMSRLY-QVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 43 ~~s~~gki~-qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
-++|++++. |+|||.+|++++++++|++.+||+||+.++| .++. +||+.|++||+|++
T Consensus 6 ~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-------s~~~-~KI~~I~d~i~~~~ 64 (259)
T 1q5q_A 6 YASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-------STAL-HKVSELYDRLGFAA 64 (259)
T ss_dssp ---CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-------CSSS-CSEEEEETTEEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-------CCCc-CcEEEeCCCEEEEE
Confidence 358999995 9999999999999999999999999999998 1334 89999999999863
No 40
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=99.03 E-value=5.9e-11 Score=87.43 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=48.7
Q ss_pred HHHHHHHHhccCcEEEEeeCCeEEEEEeecccccccc-cCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 7 VEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSF-LPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 7 veya~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~-~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+|||++ +++|+|+|||+++|||||+++++.....++ .....||++|+ +++.++++|..+|...|+...|..
T Consensus 48 ~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~------d~i~~~~aG~~aD~~~l~~~lr~~ 119 (291)
T 2jay_A 48 AGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITD------DYTATGIAGTAAVAVEFARLYAVE 119 (291)
T ss_dssp -----------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHHHH
T ss_pred cccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeC------CcEEEEEcccHHHHHHHHHHHHHH
Confidence 799999 999999999999999999999987766333 34678999999 999999999999999998766543
No 41
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=98.96 E-value=7.7e-11 Score=86.95 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=60.3
Q ss_pred HHHHHhccCcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 10 AMEAISHAGTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 10 a~~av~~g~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
|+||+++|+|+|||+++|||||+++++... ++...+...||++|+ +++.++++|..+|...|+...+..
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~------~~i~~~~aG~~aD~~~l~~~~r~~ 127 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTD------EYSAAGIAGTAGIAIELVRLFAVE 127 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEE------TTEEEEEEEBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEEC------CcEEEEEeecHHHHHHHHHHHHHH
Confidence 899999999999999999999999998775 566667789999999 999999999999999998776653
No 42
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=98.95 E-value=9.6e-11 Score=81.70 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=60.1
Q ss_pred HHHHhccCcEEEEeeCCeEEEEEeeccccc-ccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 11 MEAISHAGTCLGILAQDGILLAAEKRLNQD-FSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 11 ~~av~~g~~~vgi~~~~gvvl~~~k~~~~~-l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+||+++|+|+||++++||||++++++.... +...+...|+++|+ +++.++++|..+|...|....|..
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~~ 71 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVH------DKIWCCRSGSAADTQAIADIVQYH 71 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEE------TTEEEEEEEBHHHHHHHHHHHHHH
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcC------CCEEEEccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999988776 44445668999999 999999999999999999777653
No 43
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=98.91 E-value=1.3e-10 Score=81.71 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=60.4
Q ss_pred HHHHhccCcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcc
Q psy6595 11 MEAISHAGTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTN 85 (108)
Q Consensus 11 ~~av~~g~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~ 85 (108)
+||+++|+|+|||+++|||||+++++... .+...+...||++|+ +++.++++|..+|...|+...|...
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~~~ 71 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVN------NSTMLGASGDYADFQYLKQVLGQMV 71 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEET------TTEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeC------CCEEEEeccCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998765 555556789999999 9999999999999999998777543
No 44
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=98.91 E-value=3.4e-10 Score=82.18 Aligned_cols=69 Identities=17% Similarity=0.128 Sum_probs=52.9
Q ss_pred HHHHHhccCcEEEEeeCCeEEEEEeecccccc-cccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 10 AMEAISHAGTCLGILAQDGILLAAEKRLNQDF-SFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 10 a~~av~~g~~~vgi~~~~gvvl~~~k~~~~~l-~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
.+||+++|+|+||++++|||||+++++..... ...+...||++|+ +++.++.+|..+|...|....+..
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~------d~i~~~~aG~~aD~~~l~~~lr~~ 91 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRIS------PKIWCAGAGTAADTEAVTQLIGSN 91 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEE------TTEEEEEEESHHHHHHHHHHHHHH
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEc------CCEEEEeccCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999876643 4445679999999 999999999999999998776643
No 45
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=98.86 E-value=3.1e-10 Score=80.68 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=60.3
Q ss_pred HHHHhccCcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhccc
Q psy6595 11 MEAISHAGTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNK 86 (108)
Q Consensus 11 ~~av~~g~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~ 86 (108)
+||+++|+++|||+++|||||+++++... .+.......||++|+ +++.++++|..+|...|....|....
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~------~~i~~~~aG~~aD~~~l~~~~~~~~~ 72 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVG------DNTVVGISGDISDMQHIERLLKDLVT 72 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEET------TTEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeC------CCEEEEccccHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998765 455555779999999 99999999999999999987775433
No 46
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=98.85 E-value=6.5e-10 Score=78.28 Aligned_cols=67 Identities=21% Similarity=0.427 Sum_probs=54.7
Q ss_pred HHHhccCcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 12 EAISHAGTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 12 ~av~~g~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
.++++|+|+||++++||||++++++... ++...+...||++|+ +++.++++|..+|...|....|..
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~~ 70 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQID------TYTGMTIAGLVGDAQVLVRYMKAE 70 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE------TTEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeC------CCEEEEeCcCHHHHHHHHHHHHHH
Confidence 4788999999999999999999998776 566667789999999 999999999999999999877754
No 47
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=98.82 E-value=3.3e-10 Score=82.19 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=61.7
Q ss_pred HHHHHHHHhccCcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcc
Q psy6595 7 VEYAMEAISHAGTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTN 85 (108)
Q Consensus 7 veya~~av~~g~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~ 85 (108)
.+-+++|+++|+|+|||+++|||||+++++... .+.......||++|+ +++.++++|..+|...|+...|...
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~------d~i~~~~aG~~aD~~~l~~~lr~~~ 104 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVG------DNTVVGISGDISDMQHIERLLKDLV 104 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECT------TSEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcC------CCEEEEeccCHHHHHHHHHHHHHHH
Confidence 355678999999999999999999999998765 455556789999999 9999999999999999998777643
Q ss_pred c
Q psy6595 86 K 86 (108)
Q Consensus 86 ~ 86 (108)
.
T Consensus 105 ~ 105 (266)
T 1g0u_M 105 T 105 (266)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=98.82 E-value=8.2e-10 Score=81.21 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=52.9
Q ss_pred HHHHHHHhccCcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 8 EYAMEAISHAGTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 8 eya~~av~~g~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
.++..|+++|+|+||++++|||||+++++... .+...+...||++|+ +++.++++|..+|+..+....+..
T Consensus 66 ~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~------d~i~~~~aG~~AD~~~l~~~lr~~ 137 (287)
T 3nzj_K 66 PDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEIN------PFLLGTMAGGAADCQFWETWLGSQ 137 (287)
T ss_dssp ----------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE------TTEEEECEECHHHHHHHHHHHHHH
T ss_pred cchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEc------CcEEEEecCCHHHHHHHHHHHHHH
Confidence 37889999999999999999999999998765 444556779999999 999999999999999888666543
No 49
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=98.80 E-value=2.8e-09 Score=76.86 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=43.8
Q ss_pred eehhHHHhhcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 52 QVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 52 qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
+.|||+||++++++++|++++||+||+.++|. ... +||+.|++||+|++
T Consensus 16 r~EYA~~av~~GtT~vgi~~kdgVVlaadkr~-------~~~-~KI~~I~d~i~~~~ 64 (248)
T 3mi0_A 16 RSELARKGIARAKSVVALAYAGGVLFVAENPS-------RSL-QKISELYDRVGFAA 64 (248)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECCC-------SSS-CSEEEEETTEEEEE
T ss_pred chHHHHHHHhCCCcEEEEEeCCEEEEEEeCCC-------CCC-CCeEEECCCEEEEE
Confidence 47999999999999999999999999999982 234 89999999999863
No 50
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=98.76 E-value=1.8e-09 Score=75.53 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=57.7
Q ss_pred HhccCcEEEEeeCCeEEEEEeeccccccccc-CccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 14 ISHAGTCLGILAQDGILLAAEKRLNQDFSFL-PHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 14 v~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~-s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+++|+|+|||+++||||++++++....+.+. ....||++|+ +++.++++|..+|...|+...|..
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~~ 71 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLT------DKTVIGCSGFHGDCLTLTKIIEAR 71 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEE------TTEEEEEEECHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcC------CCEEEEccccHHHHHHHHHHHHHH
Confidence 5789999999999999999999988877665 4679999999 999999999999999998776654
No 51
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=98.72 E-value=1.9e-09 Score=75.05 Aligned_cols=65 Identities=14% Similarity=0.242 Sum_probs=58.4
Q ss_pred HhccCcEEEEeeCCeEEEEEeecccccccccC-ccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 14 ISHAGTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 14 v~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s-~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+.+|+|+||++++|||||+++++....+.+.+ ...||++|+ +++.++++|..+|...|....|..
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~~ 70 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMG------DRLYIGLAGLATDVQTVAQRLKFR 70 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECS------TTEEEECCSCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeC------CCEEEEccccHHHHHHHHHHHHHH
Confidence 46899999999999999999999888887766 679999999 999999999999999998777654
No 52
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=98.65 E-value=7.4e-09 Score=71.04 Aligned_cols=67 Identities=7% Similarity=0.036 Sum_probs=57.4
Q ss_pred hccCcEEEEeeCCeEEEEEeecccc-cc-cccCccCCeeee-hhHHHhhcccceeeeEeeCCeeeehhhhhhcccc
Q psy6595 15 SHAGTCLGILAQDGILLAAEKRLNQ-DF-SFLPHMSRLYQV-EYAMEAISHAGTCLGILAQDGILLAAEKRNTNKL 87 (108)
Q Consensus 15 ~~g~~~vgi~~~~gvvl~~~k~~~~-~l-~~~s~~gki~qi-eya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l 87 (108)
.+|+|+||++++||||++++++... .+ .......||++| + ++..++++|..+|...|....|....+
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~------~~i~~~~aG~~aD~~~l~~~~~~~~~~ 72 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFN------GKVLAGFAGSVADAFTLFEKFEAKLEE 72 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETT------TTEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECC------CCEEEEeCchHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998776 45 566677999999 9 999999999999999999776654433
No 53
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=98.63 E-value=7.1e-09 Score=73.15 Aligned_cols=66 Identities=24% Similarity=0.280 Sum_probs=57.6
Q ss_pred HHhccCcEEEEeeCCeEEEEEeecccccccc-cCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 13 AISHAGTCLGILAQDGILLAAEKRLNQDFSF-LPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 13 av~~g~~~vgi~~~~gvvl~~~k~~~~~l~~-~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
.+++|+|+|||+++|||||+++++....+.+ .+...||++|+ ++..++++|..+|...|....+..
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~~ 71 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCG------DNIVMSANGFAADGDALVKRFKNS 71 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEE------TTEEEEEEESHHHHHHHHHHHHHH
T ss_pred cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeC------CCEEEEccccHHHHHHHHHHHHHH
Confidence 3678999999999999999999988777764 34679999999 999999999999999998776653
No 54
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=98.54 E-value=2.5e-08 Score=69.11 Aligned_cols=61 Identities=23% Similarity=0.359 Sum_probs=53.9
Q ss_pred CcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+|+||++++||||++++++... ++...+...||++|+ +++.++++|..+|...|+...|..
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~~ 62 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIA------DRMAMTTAGSVGDAQFLARIIKIE 62 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEE------TTEEEEEEECHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcC------CCEEEEecccHHHHHHHHHHHHHH
Confidence 5899999999999999998776 566667789999999 999999999999999999777653
No 55
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=98.53 E-value=1.2e-08 Score=71.83 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=53.8
Q ss_pred cCcEEEEeeCCeEEEEEeeccccc-ccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcc
Q psy6595 17 AGTCLGILAQDGILLAAEKRLNQD-FSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTN 85 (108)
Q Consensus 17 g~~~vgi~~~~gvvl~~~k~~~~~-l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~ 85 (108)
|+|+|||+++|||||+++++.... +...+...||++|+ +++.++++|..+|...|+...|...
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~------~~i~~~~aG~~aD~~~l~~~~~~~~ 64 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKID------DYIAMTIAGSVGDAQAIVRLLIAEA 64 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEE------TTEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEec------CCEEEEeeEcHHHHHHHHHHHHHHH
Confidence 789999999999999999987765 44456779999999 9999999999999999997776543
No 56
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=98.53 E-value=2.4e-08 Score=69.40 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=54.0
Q ss_pred CcEEEEeeCCeEEEEEeeccccc-ccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhcc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQD-FSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTN 85 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~-l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~ 85 (108)
+|+||++++|||||+++++.... +...+...||++|+ +++.++++|..+|...|....|...
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~~~ 63 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIH------DRIFCCRSGSAADTQAVADAVTYQL 63 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEE------TTEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcC------CCEEEEcCccHHHHHHHHHHHHHHH
Confidence 58999999999999999988777 55556679999999 9999999999999999997776543
No 57
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=98.53 E-value=2.5e-08 Score=67.84 Aligned_cols=62 Identities=5% Similarity=0.025 Sum_probs=53.5
Q ss_pred CcEEEEeeCCeEEEEEeeccccc-ccccCccCCeeee-hhHHHhhcccceeeeEeeCCeeeehhhhhhcc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQD-FSFLPHMSRLYQV-EYAMEAISHAGTCLGILAQDGILLAAEKRNTN 85 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~-l~~~s~~gki~qi-eya~~av~~~~~~v~~~~~D~~vl~~~~r~~~ 85 (108)
+|+||++++|||||+++++.... +.......||++| + ++..++++|..+|...|....|...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~------~~i~~~~aG~~aD~~~l~~~~~~~~ 64 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYN------GKVLAGFAGGTADAFTLFELFERKL 64 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETT------TTEEEEEESCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECC------CCEEEEeCccHHHHHHHHHHHHHHH
Confidence 58999999999999999987765 5555677999999 9 9999999999999999997766543
No 58
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=98.50 E-value=3.4e-08 Score=68.55 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=56.3
Q ss_pred HhccCcEEEEeeCCeEEEEEeecccccccccC-ccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 14 ISHAGTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 14 v~~g~~~vgi~~~~gvvl~~~k~~~~~l~~~s-~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+.+|+|+||++++|||||+++++....+.+.+ ...||++|+ ++.++++|..+|...|+...|..
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-------~i~~~~aG~~aD~~~l~~~~~~~ 69 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-------HVFLGITGLATDVTTLNEMFRYK 69 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-------TEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-------CEEEEeeEcHHHHHHHHHHHHHH
Confidence 57899999999999999999999888887766 679999995 68899999999999999776654
No 59
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=98.49 E-value=4.3e-08 Score=67.89 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=53.3
Q ss_pred CcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
.++|||+++||||++++++... ++...+...||++|+ +++.++++|..+|...|+...|..
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~~ 63 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMS------EKILLLCVGEAGDTVQFAEYIQKN 63 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECS------SSEEEEEEESTTHHHHHHHHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEec------CCEEEEeCcCHHHHHHHHHHHHHH
Confidence 4899999999999999998776 566667789999999 999999999999999988776643
No 60
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=98.49 E-value=3.5e-08 Score=66.87 Aligned_cols=63 Identities=8% Similarity=0.057 Sum_probs=53.9
Q ss_pred CcEEEEeeCCeEEEEEeecccc-cccccCccCCeeee-hhHHHhhcccceeeeEeeCCeeeehhhhhhccc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQV-EYAMEAISHAGTCLGILAQDGILLAAEKRNTNK 86 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qi-eya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~ 86 (108)
+|+||++++||||++++++... .+.......||++| + ++..++++|..+|...|....|....
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~------~~i~~~~aG~~aD~~~l~~~~~~~~~ 65 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGE------GKVLAGFAGSVADAMTLFDRFEAKLR 65 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETT------TTEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCC------CCEEEEeCccHHHHHHHHHHHHHHHH
Confidence 5899999999999999998775 45555677999999 9 99999999999999999987765433
No 61
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=98.48 E-value=2.4e-08 Score=68.98 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=54.2
Q ss_pred CcEEEEeeCCeEEEEEeeccccc-ccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhccc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQD-FSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNK 86 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~-l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~ 86 (108)
+|+||++++|||||+++++.... +...+...||++|+ +++.++++|..+|...|....|....
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~~~~ 64 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLH------QRIFCALSGSAADAQAIADMAAYQLE 64 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEE------TTEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcC------CCEEEEecccHHHHHHHHHHHHHHHH
Confidence 58999999999999999987766 55556779999999 99999999999999999987765433
No 62
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=98.47 E-value=3e-08 Score=68.85 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=52.6
Q ss_pred CcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhh
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRN 83 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~ 83 (108)
+|+||++++|||||+++++... ++...+...||++|+ +++.++++|..+|...|....+.
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~ 61 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEIN------PYLLGTMAGGAADCSFWERLLAR 61 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE------TTEEEECCBCHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcC------CCEEEEccCcHHHHHHHHHHHHH
Confidence 5899999999999999998776 566666789999999 99999999999999888876654
No 63
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=98.46 E-value=3.3e-08 Score=69.09 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=53.9
Q ss_pred CcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+|+||++++||||++++++... ++...+...||++|+ +++.++++|..+|...|....|..
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~~ 62 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEIN------PFLLGTMAGGAADCQFWETWLGSQ 62 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE------TTEEEECCBCHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeC------CcEEEEccccHHHHHHHHHHHHHH
Confidence 5899999999999999998776 566667789999999 999999999999999998776654
No 64
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=98.45 E-value=4.4e-08 Score=67.63 Aligned_cols=61 Identities=25% Similarity=0.286 Sum_probs=53.5
Q ss_pred CcEEEEeeCCeEEEEEeeccccccccc-CccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQDFSFL-PHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~l~~~-s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
.|+||++++|||||+++++....+.+. ....||++|+ ++..++++|..+|...|....|..
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~~i~~~~aG~~aD~~~l~~~~~~~ 63 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLS------PHTLMSFAGEAGDTVQFAEYIQAN 63 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEE------TTEEEEEEESHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeC------CCEEEEeccCHHHHHHHHHHHHHH
Confidence 489999999999999999987776664 4679999999 999999999999999999777653
No 65
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=98.44 E-value=5e-08 Score=69.37 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=53.7
Q ss_pred CcEEEEeeCCeEEEEEeecccc-cccccCccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQ-DFSFLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~-~l~~~s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+|+|||+++|||||+++++... ++...+...||++|+ +++.++++|..+|...|+...+..
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~------~~i~~~~aG~~aD~~~l~~~~~~~ 62 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTD------EYSAAGIAGTAGIAIELVRLFAVE 62 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEE------TTEEEEEEECHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeC------CcEEEEcCCcHHHHHHHHHHHHHH
Confidence 5899999999999999998776 666667789999999 999999999999999998776653
No 66
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=98.38 E-value=8.8e-08 Score=67.56 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=53.3
Q ss_pred CcEEEEeeCCeEEEEEeecccccccccC-ccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~l~~~s-~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+|+||++++|||||+++++....+.+.+ ...||++|+ +++.++++|..+|...|....|..
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~------d~i~~~~aG~~aD~~~l~~~~~~~ 62 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRIS------PKIWCAGAGTAADTEAVTQLIGSN 62 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEE------TTEEEEEEECHHHHHHHHHHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEec------CCEEEEecccHHHHHHHHHHHHHH
Confidence 5899999999999999998877765544 569999999 999999999999999999776654
No 67
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=98.38 E-value=1.2e-07 Score=69.77 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=44.5
Q ss_pred HHHhhcccceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEe
Q psy6595 56 AMEAISHAGTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 56 a~~av~~~~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
|+||++++++++|++.+||+||+.++|.+. ++...++. +||+.|++|++++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~-~KI~~I~~~i~~~ 109 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDV-EAVYVTDEYSAAG 109 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCC-CCEEEEETTEEEE
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCc-ceEEEECCcEEEE
Confidence 899999999999999999999999999886 67666666 9999999999986
No 68
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=98.35 E-value=1.6e-07 Score=66.83 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=53.4
Q ss_pred CcEEEEeeCCeEEEEEeeccccccccc-CccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQDFSFL-PHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~l~~~-s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+|+||++++|||||+++++....+.+. +...||++|+ +++.++.+|..+|...|....|..
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~------~~i~~~~aG~~aD~~~l~~~~~~~ 62 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFIS------PNIYCCGAGTAADTDMTTQLISSN 62 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEE------TTEEEEEEESHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEec------CCEEEEecCcHHHHHHHHHHHHHH
Confidence 589999999999999999988777655 3568999999 999999999999999998776643
No 69
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=98.34 E-value=1.3e-07 Score=67.50 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=53.3
Q ss_pred CcEEEEeeCCeEEEEEeeccccccccc-CccCCeeeehhHHHhhcccceeeeEeeCCeeeehhhhhhc
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQDFSFL-PHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNT 84 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~l~~~-s~~gki~qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~ 84 (108)
+|+||++++|||||+++++....+.+. +...||++|+ +++.++.+|..+|...+....|..
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~------~~i~~~~aG~~aD~~~l~~~~~~~ 62 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIA------PKIYCCGAGVAADTEMTTRMAASK 62 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEE------TTEEEEEEESHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEec------CCEEEEecccHHHHHHHHHHHHHH
Confidence 489999999999999999887777654 4568999999 999999999999999998776654
No 70
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=98.32 E-value=3e-07 Score=67.56 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=32.9
Q ss_pred ehhHHHhhcccceeeeEeeCCeeeehhhhhhccc-ccccCccccceeeeccceeEe
Q psy6595 53 VEYAMEAISHAGTCLGILAQDGILLAAEKRNTNK-LLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 53 ieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~~-l~~~~~~~~kI~~I~~~ig~~ 107 (108)
.+||++ ++++++++|++.+||+||+.++|.+.. +...+.. +||+.|++|++|+
T Consensus 48 ~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~-~KI~~i~d~i~~~ 101 (291)
T 2jay_A 48 AGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDV-RKVYITDDYTATG 101 (291)
T ss_dssp -----------CCEEEEEETTEEEEEECCC--------CCCC-CCEEEEETTEEEE
T ss_pred cccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCc-ccEEEeCCcEEEE
Confidence 589999 999999999999999999999998876 4444444 9999999999986
No 71
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=98.30 E-value=2.9e-07 Score=63.93 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=43.7
Q ss_pred HHhhcccceeeeEeeCCeeeehhhhhhccc-ccccCccccceeeeccceeEe
Q psy6595 57 MEAISHAGTCLGILAQDGILLAAEKRNTNK-LLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 57 ~~av~~~~~~v~~~~~D~~vl~~~~r~~~~-l~~~~~~~~kI~~I~~~ig~~ 107 (108)
.+|++++++++|++.+|+++|+.++|.+.. +...++. +||+.|++|++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~-~Ki~~i~~~i~~~ 53 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVT-DKLTRVHDKIWCC 53 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSC-CCEEEEETTEEEE
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCc-CceEEcCCCEEEE
Confidence 578899999999999999999999999887 4544544 9999999999986
No 72
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=98.22 E-value=4.5e-07 Score=63.52 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=43.0
Q ss_pred HhhcccceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEe
Q psy6595 58 EAISHAGTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 58 ~av~~~~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
+|++++++++|++.+|+++|+.++|.+. .+...++. +||+.|++|++++
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~-~Ki~~i~~~i~~~ 52 (219)
T 1iru_N 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNI-SRIMRVNNSTMLG 52 (219)
T ss_dssp SCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSC-CCEEEETTTEEEE
T ss_pred CCccCCceEEEEEeCCEEEEEECCccccCcEEecCCC-CceEEeCCCEEEE
Confidence 5789999999999999999999999876 56555555 9999999999986
No 73
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=98.21 E-value=6.1e-07 Score=64.99 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=37.2
Q ss_pred HHhhcccceeeeEeeCCeeeehhhhhhcccccc-cCccccceeeeccceeEe
Q psy6595 57 MEAISHAGTCLGILAQDGILLAAEKRNTNKLLD-EGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 57 ~~av~~~~~~v~~~~~D~~vl~~~~r~~~~l~~-~~~~~~kI~~I~~~ig~~ 107 (108)
.+|++++++++|++.+||++|+.++|.++..+. .+.. +||+.|++|++++
T Consensus 23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~-~KI~~I~d~i~~~ 73 (261)
T 3nzj_H 23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNC-AKLHRISPKIWCA 73 (261)
T ss_dssp -------CCEEEEEETTEEEEEEECCEEETTEEEETTC-CCEEEEETTEEEE
T ss_pred CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCc-ceEEEEcCCEEEE
Confidence 578899999999999999999999998875443 4444 9999999999986
No 74
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=98.17 E-value=1.1e-06 Score=64.55 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=38.4
Q ss_pred hHHHhhcccceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEeC
Q psy6595 55 YAMEAISHAGTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 55 ya~~av~~~~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
++..++.++++++|++.+||+||+.++|.+. .+...++. +||+.|++|+++++
T Consensus 67 ~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~-~KI~~I~d~i~~~~ 120 (287)
T 3nzj_K 67 DCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTV-KKVIEINPFLLGTM 120 (287)
T ss_dssp ---------CCEEEEEETTEEEEEECCCEEETTEEEESCC-CCEEEEETTEEEEC
T ss_pred chhhheccCceEEEEEECCEEEEEEccccccCceeecCCc-ceEEEEcCcEEEEe
Confidence 6778899999999999999999999999886 55555555 99999999999874
No 75
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=98.15 E-value=8.3e-07 Score=62.83 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=42.6
Q ss_pred HhhcccceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEe
Q psy6595 58 EAISHAGTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 58 ~av~~~~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
++++++++++|++.+|+++|+.++|.+. .+...++. +||+.|++|++++
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~-~KI~~i~~~i~~~ 52 (233)
T 1ryp_N 3 QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGV-ERLIPVGDNTVVG 52 (233)
T ss_dssp CCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCC-CCEEEETTTEEEE
T ss_pred ccccCCceEEEEEECCEEEEEEcCccccCCeeecCCc-CceEEeCCCEEEE
Confidence 5789999999999999999999999876 45555555 9999999999986
No 76
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=98.15 E-value=1.1e-06 Score=61.59 Aligned_cols=48 Identities=19% Similarity=0.414 Sum_probs=38.4
Q ss_pred hhcccceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEe
Q psy6595 59 AISHAGTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 59 av~~~~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
+++++++++|++.+||++|+.++|.+. ++...++. +||+.|++|++++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~-~Ki~~i~~~i~~~ 52 (217)
T 1yar_H 4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNG-KKLFQIDTYTGMT 52 (217)
T ss_dssp -----CCEEEEEETTEEEEEECCCEEETTEEEESCC-CCEEEEETTEEEE
T ss_pred CCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCcc-CCeEEeCCCEEEE
Confidence 458899999999999999999999886 56666665 9999999999986
No 77
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=98.11 E-value=1.5e-06 Score=60.55 Aligned_cols=47 Identities=30% Similarity=0.310 Sum_probs=41.5
Q ss_pred cccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 61 SHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 61 ~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
+++++++|++.+|+++|+.++|.+..++......+||+.|++|++++
T Consensus 7 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~ 53 (213)
T 1iru_M 7 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIG 53 (213)
T ss_dssp CCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEE
T ss_pred CCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEE
Confidence 78999999999999999999999888876533349999999999986
No 78
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=98.10 E-value=6.6e-07 Score=64.74 Aligned_cols=55 Identities=15% Similarity=0.255 Sum_probs=44.4
Q ss_pred eehhHHHhhcccceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEe
Q psy6595 52 QVEYAMEAISHAGTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 52 qieya~~av~~~~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
..+-++++++++++++|++.+|++||+.++|.+. .+...++. +||+.|++|++++
T Consensus 30 ~~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~-~KI~~i~d~i~~~ 85 (266)
T 1g0u_M 30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGV-ERLIPVGDNTVVG 85 (266)
T ss_dssp ----CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCC-CCEEECTTSEEEE
T ss_pred chhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCc-CcEEEcCCCEEEE
Confidence 3455677889999999999999999999999876 45555555 9999999999986
No 79
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=98.10 E-value=1.9e-06 Score=59.68 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=42.7
Q ss_pred cccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEeC
Q psy6595 61 SHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 61 ~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.++++++|++.+|+++|+.++|.+..+++.+...+||+.|++|+++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~ 53 (205)
T 1iru_J 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGL 53 (205)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEEC
T ss_pred CCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEc
Confidence 789999999999999999999999998886533499999999999874
No 80
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=97.99 E-value=2.7e-06 Score=59.77 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=41.2
Q ss_pred hcccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 60 ISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 60 v~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
++++++++|++.+|+++|+.++|.+..++......+||+.|++|++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~ 53 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMS 53 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEE
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEE
Confidence 378999999999999999999999888764332349999999999986
No 81
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=97.90 E-value=7.8e-06 Score=57.36 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=37.5
Q ss_pred cceeeeEeeCCeeeehhhhhhccccc-ccCccccceeeeccceeEeC
Q psy6595 63 AGTCLGILAQDGILLAAEKRNTNKLL-DEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 63 ~~~~v~~~~~D~~vl~~~~r~~~~l~-~~~~~~~kI~~I~~~ig~~~ 108 (108)
|++++|++.+||+||+.++|.+...+ ..+.. +||+.|++|++|++
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~-~KI~~i~~~i~~~~ 46 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEA-KKLYKIDDYIAMTI 46 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTC-CCEEEEETTEEEEC
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeecccc-ceeEEecCCEEEEe
Confidence 46899999999999999999887644 44544 99999999999874
No 82
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=97.88 E-value=7.3e-06 Score=56.65 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=41.3
Q ss_pred cccceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 61 SHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 61 ~~~~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
.++++++|++.+|+++|+.++|.+..+++.+...+||+.|+ |++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~ 51 (204)
T 1ryp_J 6 INGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLG 51 (204)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEE
T ss_pred CCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEE
Confidence 78999999999999999999999999988753349999999 99986
No 83
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=97.87 E-value=9.3e-06 Score=55.42 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=40.2
Q ss_pred cccceeeeEeeCCeeeehhhhhhcc-cc-cccCccccceeee-ccceeEe
Q psy6595 61 SHAGTCLGILAQDGILLAAEKRNTN-KL-LDEGTTSEKIYKL-HDSLNII 107 (108)
Q Consensus 61 ~~~~~~v~~~~~D~~vl~~~~r~~~-~l-~~~~~~~~kI~~I-~~~ig~~ 107 (108)
.++++++|++.+|+++|+.++|.+. .+ ...++. +||++| ++|++++
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~-~KI~~i~~~~i~~~ 51 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTA-RKVRKLFNGKVLAG 51 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCC-CCEEEETTTTEEEE
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCC-CcEEEECCCCEEEE
Confidence 5788999999999999999999887 45 666665 999999 9999986
No 84
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=97.79 E-value=1.5e-05 Score=55.00 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=37.6
Q ss_pred ceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEeC
Q psy6595 64 GTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.+++|++.+|+++|+.++|.+. ++...++. +||+.|++|+++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~-~Ki~~i~~~i~~~~ 45 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTV-KKVIEINPYLLGTM 45 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCC-CCEEEEETTEEEEC
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcc-cceEEcCCCEEEEc
Confidence 3789999999999999999887 56665555 99999999999864
No 85
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=97.77 E-value=1.4e-05 Score=55.22 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=37.1
Q ss_pred ceeeeEeeCCeeeehhhhhhccc-ccccCccccceeeeccceeEe
Q psy6595 64 GTCLGILAQDGILLAAEKRNTNK-LLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~~-l~~~~~~~~kI~~I~~~ig~~ 107 (108)
++++|++.+||++|+.++|.++. +...++. +||+.|++|++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~-~Ki~~i~~~i~~~ 44 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVT-DKLTPIHDRIFCC 44 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSC-CCEEEEETTEEEE
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCc-CceEEcCCCEEEE
Confidence 37899999999999999999887 5555555 9999999999986
No 86
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=97.76 E-value=1.9e-05 Score=54.91 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=38.1
Q ss_pred ceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEeC
Q psy6595 64 GTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
++++|++.+||++|+.++|.++ ++...++. +||+.|++|+++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~-~Ki~~i~~~i~~~~ 45 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTV-KRVIEINPFLLGTM 45 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCC-CCEEEEETTEEEEC
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcc-cceeeeCCcEEEEc
Confidence 3789999999999999999887 67666665 99999999999874
No 87
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=97.75 E-value=1.6e-05 Score=54.91 Aligned_cols=44 Identities=32% Similarity=0.653 Sum_probs=37.6
Q ss_pred ceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEeC
Q psy6595 64 GTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
++++|++.+||++|+.++|.++ ++...++. +||+.|++|+++++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~-~Ki~~i~~~i~~~~ 45 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAA-KKIYQIADRMAMTT 45 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSC-CCEEEEETTEEEEE
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccc-cCEEEcCCCEEEEe
Confidence 3789999999999999999887 56666655 99999999999863
No 88
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=97.74 E-value=1.6e-05 Score=56.53 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=38.3
Q ss_pred ceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 64 GTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
.+++|++.+||++|+.++|.++.+++.....+||+.|++|++|+
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~ 44 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCC 44 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEE
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEE
Confidence 37899999999999999999988877544459999999999986
No 89
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=97.72 E-value=1.9e-05 Score=54.33 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=37.0
Q ss_pred ceeeeEeeCCeeeehhhhhhccc-ccccCccccceeeeccceeEeC
Q psy6595 64 GTCLGILAQDGILLAAEKRNTNK-LLDEGTTSEKIYKLHDSLNIIT 108 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~~-l~~~~~~~~kI~~I~~~ig~~~ 108 (108)
.+++|++.+||+||+.++|.+.. +...+.. +||+.|++|+++++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~-~Ki~~i~~~i~~~~ 45 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVF-DKLSPLHQRIFCAL 45 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSC-CCEEEEETTEEEEE
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEcccc-CceEEcCCCEEEEe
Confidence 37899999999999999998877 4445555 99999999999863
No 90
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=97.71 E-value=1.7e-05 Score=54.48 Aligned_cols=44 Identities=25% Similarity=0.264 Sum_probs=37.7
Q ss_pred ceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 64 GTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
.+++|++.+|+++|+.++|.+..++..+...+||+.|++|++++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~ 45 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMS 45 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEE
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEE
Confidence 47899999999999999999888777432349999999999986
No 91
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=97.70 E-value=1.9e-05 Score=55.42 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=38.0
Q ss_pred ceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 64 GTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
.+++|++.+||++|+.++|.+..+++.....+||+.|++|++++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~ 44 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCA 44 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEE
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEE
Confidence 37899999999999999999888876543449999999999986
No 92
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=97.67 E-value=2.3e-05 Score=54.02 Aligned_cols=43 Identities=16% Similarity=0.383 Sum_probs=37.3
Q ss_pred ceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEe
Q psy6595 64 GTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
.+++|++.+|+++|+.++|.+. ++...++. +||+.|++|++++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~-~Ki~~i~~~i~~~ 45 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDH-DKMFKMSEKILLL 45 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSC-CCEEECSSSEEEE
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCc-ceEEEecCCEEEE
Confidence 4789999999999999999887 56665655 9999999999986
No 93
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=97.67 E-value=2.6e-05 Score=52.54 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=36.9
Q ss_pred ceeeeEeeCCeeeehhhhhhcc-cccccCccccceeee-ccceeEe
Q psy6595 64 GTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKL-HDSLNII 107 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I-~~~ig~~ 107 (108)
.+++|++.+|+++|+.++|.+. .+...+.. +||+.| ++|++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~-~Ki~~i~~~~i~~~ 45 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNA-RKVRKLGEGKVLAG 45 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCC-CCEEEETTTTEEEE
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCc-ceEEEeCCCCEEEE
Confidence 3789999999999999999886 56656655 999999 9999986
No 94
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=97.66 E-value=2.7e-05 Score=55.20 Aligned_cols=44 Identities=25% Similarity=0.379 Sum_probs=38.1
Q ss_pred ceeeeEeeCCeeeehhhhhhcccccccCccccceeeeccceeEe
Q psy6595 64 GTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
.+++|++.+||++|+.++|.+..++..+...+||+.|++|++++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~ 44 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCC 44 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEE
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEE
Confidence 37899999999999999999988876543449999999999986
No 95
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=97.66 E-value=2.4e-05 Score=55.41 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=37.7
Q ss_pred ceeeeEeeCCeeeehhhhhhcc-cccccCccccceeeeccceeEe
Q psy6595 64 GTCLGILAQDGILLAAEKRNTN-KLLDEGTTSEKIYKLHDSLNII 107 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~-~l~~~~~~~~kI~~I~~~ig~~ 107 (108)
++++|++.+||+||+.++|.++ ++...++. +||+.|++|++++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~-~KI~~i~~~i~~~ 44 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDV-EKVYVTDEYSAAG 44 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCC-CCEEEEETTEEEE
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCc-CcEEEeCCcEEEE
Confidence 3789999999999999999886 67666666 9999999999986
No 96
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=97.63 E-value=3e-05 Score=52.45 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=36.6
Q ss_pred ceeeeEeeCCeeeehhhhhhccc-ccccCccccceeee-ccceeEe
Q psy6595 64 GTCLGILAQDGILLAAEKRNTNK-LLDEGTTSEKIYKL-HDSLNII 107 (108)
Q Consensus 64 ~~~v~~~~~D~~vl~~~~r~~~~-l~~~~~~~~kI~~I-~~~ig~~ 107 (108)
.+++|++.+|+++|+.++|.+.. +..+++. +||++| ++|++++
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~-~Ki~~i~~~~i~~~ 45 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNA-RKVRRLYNGKVLAG 45 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCC-CCEEEETTTTEEEE
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCC-CcEEEECCCCEEEE
Confidence 37899999999999999998875 5555555 999999 9999986
No 97
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=51.85 E-value=7 Score=18.22 Aligned_cols=12 Identities=42% Similarity=0.681 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcc
Q psy6595 6 QVEYAMEAISHA 17 (108)
Q Consensus 6 qveya~~av~~g 17 (108)
-+|||+.|.++.
T Consensus 6 aleyaqqaleka 17 (30)
T 3s0r_A 6 ALEYAQQALEKA 17 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 479999887764
No 98
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=30.00 E-value=25 Score=25.10 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=23.2
Q ss_pred cCcEEEEeeCCeEEEEEeecccccccccCccCCeeeeh
Q psy6595 17 AGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54 (108)
Q Consensus 17 g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qie 54 (108)
|-..+.++..|.++.+.....+..++.|+..|+.+++.
T Consensus 32 g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~ 69 (307)
T 1zi0_A 32 GKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 69 (307)
T ss_dssp ----------CCEEEEEEEETTCEEEEEETTSEEEEEE
T ss_pred CceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEE
Confidence 45667778888887776666778899999999998886
No 99
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=28.56 E-value=35 Score=25.25 Aligned_cols=38 Identities=5% Similarity=-0.031 Sum_probs=29.2
Q ss_pred cCcEEEEeeCCeEEEEEeecccccccccCccCCeeeeh
Q psy6595 17 AGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54 (108)
Q Consensus 17 g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qie 54 (108)
|-..+.++-.|.++-+.....+..++.|+..||.|++.
T Consensus 36 g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~ 73 (370)
T 3l6v_A 36 GRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 73 (370)
T ss_dssp CSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 34667777778787666656677888899999999886
No 100
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=23.86 E-value=20 Score=26.05 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=27.2
Q ss_pred CcEEEEeeCCeEEEEEeecccccccccCccCCeeeeh
Q psy6595 18 GTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54 (108)
Q Consensus 18 ~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qie 54 (108)
...+..+-.|.+..+.....+..++.|+..||+|++.
T Consensus 33 ~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~ 69 (327)
T 3uc1_A 33 VQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAK 69 (327)
T ss_dssp ---CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEE
T ss_pred ccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 3555566677787777667788899999999999986
No 101
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=21.34 E-value=68 Score=21.16 Aligned_cols=20 Identities=5% Similarity=-0.268 Sum_probs=18.6
Q ss_pred HHHHHHHHHhccCcEEEEee
Q psy6595 6 QVEYAMEAISHAGTCLGILA 25 (108)
Q Consensus 6 qveya~~av~~g~~~vgi~~ 25 (108)
=+|-|.+|-++|-+.|+|.+
T Consensus 93 ~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 93 LLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp HHHHHHHHHHHTCCEEEEES
T ss_pred HHHHHHHHHHCCCcEEEEeC
Confidence 58999999999999999987
No 102
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=20.06 E-value=34 Score=24.70 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=29.8
Q ss_pred cCcEEEEeeCCeEEEEEeecccccccccCccCCeeeeh
Q psy6595 17 AGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVE 54 (108)
Q Consensus 17 g~~~vgi~~~~gvvl~~~k~~~~~l~~~s~~gki~qie 54 (108)
+...++++-.|.++.+.....+..++.|+..|++|++.
T Consensus 29 ~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~ 66 (323)
T 1wp5_A 29 NGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCP 66 (323)
T ss_dssp TTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEE
T ss_pred CccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEE
Confidence 34466778888887776666778889999999998886
Done!