RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6595
(108 letters)
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 86.9 bits (216), Expect = 1e-22
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
RL+QVEY +EAI T +GI +G+ LA EKR T+ L++ + EKI ++
Sbjct: 20 RLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDA 72
Score = 66.8 bits (164), Expect = 6e-15
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RL+QVEY +EAI T +GI +G+ LA EKR
Sbjct: 20 RLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKR 53
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 86.2 bits (214), Expect = 3e-22
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
R +QVEYA++A+ + T +GI DG++ A EK T+KLL + KI +
Sbjct: 16 RNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDR 68
Score = 66.1 bits (162), Expect = 1e-14
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
R +QVEYA++A+ + T +GI DG++ A EK
Sbjct: 16 RNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKL 49
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 86.1 bits (214), Expect = 3e-22
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
+L Q++YA+ A+ T LGI A +G+++A EK++++ L T K+ L
Sbjct: 17 KLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSE-TLSKVSLLTP 69
Score = 66.1 bits (162), Expect = 1e-14
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
+L Q++YA+ A+ T LGI A +G+++A EK+
Sbjct: 17 KLGQIDYALTAVKQGVTSLGIKATNGVVIATEKK 50
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 85.9 bits (213), Expect = 6e-22
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
R +QVEYA++A+ + T +GI DG++ A EK T+KLL + KI +
Sbjct: 20 RNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDR 72
Score = 66.2 bits (162), Expect = 1e-14
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
R +QVEYA++A+ + T +GI DG++ A EK
Sbjct: 20 RNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKL 53
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 84.9 bits (211), Expect = 7e-22
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
+L Q+EYA+ A++ +GI A +G++LA EK+ + L DE + K+ +
Sbjct: 17 KLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER-SVHKVEPITK 69
Score = 65.7 bits (161), Expect = 1e-14
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
+L Q+EYA+ A++ +GI A +G++LA EK+
Sbjct: 17 KLVQIEYALAAVAGGAPSVGIKAANGVVLATEKK 50
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 84.6 bits (210), Expect = 1e-21
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
L+QVEYA EA+ T +G+ +D ++L EK++ KL DE T KI L D
Sbjct: 15 HLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDER-TVRKICALDD 67
Score = 65.3 bits (160), Expect = 2e-14
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
L+QVEYA EA+ T +G+ +D ++L EK+
Sbjct: 15 HLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKK 48
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 81.9 bits (203), Expect = 1e-20
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 49 RLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
RLYQVEYA +AI+ G T + + +D ++ +K+ +KLLD T ++K+ +
Sbjct: 21 RLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSS-TVTHLFKITE 74
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 82.0 bits (203), Expect = 1e-20
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
++QVEYA+EA+ +G+ ++ ++L E+R+T KL D T K+ K+
Sbjct: 14 HIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDS 67
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 82.0 bits (203), Expect = 1e-20
Identities = 43/54 (79%), Positives = 48/54 (88%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
RLYQVEYAMEAI HAGTCLGILA DG+LLAAE+RN +KLLDE SEKIYKL++
Sbjct: 17 RLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNE 70
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 81.5 bits (202), Expect = 2e-20
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 49 RLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
RLYQVEYA +A + L + +D ++ ++K+ +KLLD T I+ +
Sbjct: 15 RLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTV-SYIFCISR 68
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 81.2 bits (201), Expect = 2e-20
Identities = 35/54 (64%), Positives = 49/54 (90%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
RLYQVEYA+E+ISHAGT +GI+A DGI+LAAE++ T+ LL++ T++EK+YKL+D
Sbjct: 17 RLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLND 70
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 81.2 bits (201), Expect = 3e-20
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
R++Q+EYAMEA+ +G+ ++ +L A KR ++L +KI + +
Sbjct: 18 RIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAA---HQKKILHVDN 68
Score = 65.8 bits (161), Expect = 2e-14
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQV 53
R++Q+EYAMEA+ +G+ ++ +L A KR S L H ++ V
Sbjct: 18 RIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQ---SELAAHQKKILHV 66
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 78.9 bits (195), Expect = 2e-19
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 43 FLPHMSRLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
F P RL+QVEY++EAI T +GI ++G++L EKR T+ LL+ + EKI ++
Sbjct: 7 FSPE-GRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESD-SIEKIVEIDR 64
Score = 58.8 bits (143), Expect = 5e-12
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RL+QVEY++EAI T +GI ++G++L EKR
Sbjct: 12 RLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKR 45
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 78.5 bits (194), Expect = 3e-19
Identities = 19/54 (35%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
R++QVEYAM+A+ ++ T +GI +DG++ EK +KL +EG ++++++ +
Sbjct: 19 RVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDR 71
Score = 58.9 bits (143), Expect = 5e-12
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
R++QVEYAM+A+ ++ T +GI +DG++ EK
Sbjct: 19 RVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKL 52
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 75.7 bits (187), Expect = 2e-18
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
RL+QVEYA+EAI +G+ + +L A KRN ++L +KI K +
Sbjct: 17 RLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSS---YQKKIIKCDE 67
Score = 60.3 bits (147), Expect = 2e-12
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLP-HMSRLYQV 53
RL+QVEYA+EAI +G+ + +L A KR L + ++ +
Sbjct: 17 RLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNA---DELSSYQKKIIKC 65
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 75.4 bits (186), Expect = 3e-18
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
RL+QVEYA EA+ T LG+ +G+LL ++K+ ++L+++ + EKI + D
Sbjct: 20 RLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQN-SIEKIQLIDD 72
Score = 55.7 bits (135), Expect = 7e-11
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RL+QVEYA EA+ T LG+ +G+LL ++K+
Sbjct: 20 RLFQVEYAREAVKKGSTALGMKFANGVLLISDKK 53
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 75.4 bits (186), Expect = 5e-18
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
RLYQVEYA EA+ T +GI +DG++LA ++R T+KL+ + EKI+++ D
Sbjct: 24 RLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIR-SIEKIFQIDD 76
Score = 55.8 bits (135), Expect = 9e-11
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RLYQVEYA EA+ T +GI +DG++LA ++R
Sbjct: 24 RLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRR 57
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 75.0 bits (185), Expect = 5e-18
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
RL+QVEYA EA+ T +GI ++G++L A+KR +KLL++ T EKIYK+ +
Sbjct: 20 RLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKD-TIEKIYKIDE 72
Score = 55.4 bits (134), Expect = 9e-11
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
RL+QVEYA EA+ T +GI ++G++L A+KR
Sbjct: 20 RLFQVEYAREAVKRGATAIGIKCKEGVILIADKR 53
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 53.8 bits (129), Expect = 4e-10
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 49 RLYQ-VEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
+ + E A + I+ A + + + G+L AE + +KI +L+D
Sbjct: 12 AMRERSELARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYD 58
Score = 46.1 bits (109), Expect = 2e-07
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 3 RLYQ-VEYAMEAISHAGTCLGILAQDGILLAAEKR 36
+ + E A + I+ A + + + G+L AE
Sbjct: 12 AMRERSELARKGIARAKSVVALAYAGGVLFVAENP 46
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 51.5 bits (124), Expect = 3e-09
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T G++ +DG++L A+ R TN + + EKI+ + +
Sbjct: 2 TIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKI 41
Score = 32.6 bits (75), Expect = 0.013
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 19 TCLGILAQDGILLAAEKR 36
T G++ +DG++L A+ R
Sbjct: 2 TIAGLVFRDGVILGADTR 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 51.5 bits (123), Expect = 3e-09
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 52 QVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
+ E A + I+ + + + +DG+L AE T K+ +L+D
Sbjct: 16 RSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYD 58
Score = 43.8 bits (103), Expect = 1e-06
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 6 QVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
+ E A + I+ + + + +DG+L AE
Sbjct: 16 RSELARKGIARGRSVVVLTFRDGVLFVAENP 46
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 49.3 bits (118), Expect = 2e-08
Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 41 FSFLPHM--SRLYQVEYAM-EAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKI 97
SF + + L + + +A S T +G+ +G+++AA+ R+T + K+
Sbjct: 4 LSFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKL 63
Query: 98 YKLHDSL 104
+++ +
Sbjct: 64 HRISPKI 70
Score = 36.2 bits (84), Expect = 6e-04
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 12 EAISHAGTCLGILAQDGILLAAEKR 36
+A S T +G+ +G+++AA+ R
Sbjct: 24 KATSTGTTIVGVKFNNGVVIAADTR 48
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 43.8 bits (104), Expect = 1e-06
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T G++ +DGI+L A+ R T ++ KI+ + ++
Sbjct: 2 TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNI 41
Score = 30.3 bits (69), Expect = 0.087
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 19 TCLGILAQDGILLAAEKR 36
T G++ +DGI+L A+ R
Sbjct: 2 TIAGVVYKDGIVLGADTR 19
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 43.0 bits (102), Expect = 3e-06
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 58 EAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ + T +GI +D +++A E+R T + +K++++
Sbjct: 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYT 49
Score = 33.4 bits (77), Expect = 0.006
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 12 EAISHAGTCLGILAQDGILLAAEKR 36
+ + T +GI +D +++A E+R
Sbjct: 3 QTLETGTTTVGITLKDAVIMATERR 27
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 42.6 bits (101), Expect = 4e-06
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T +G+ +G+++AA+ R+T + K++++ +
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKI 41
Score = 29.9 bits (68), Expect = 0.11
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 19 TCLGILAQDGILLAAEKR 36
T +G+ +G+++AA+ R
Sbjct: 2 TIVGVKFNNGVVIAADTR 19
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 41.9 bits (98), Expect = 8e-06
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 52 QVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ + H T + + + G+LLA ++R T L E +Y +
Sbjct: 54 DGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYS 106
Score = 33.0 bits (75), Expect = 0.010
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 6 QVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
+ + H T + + + G+LLA ++R
Sbjct: 54 DGMESGDLAPHGTTIVALTYKGGVLLAGDRR 84
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 41.7 bits (98), Expect = 1e-05
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 58 EAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
I+H T L Q GI++A + R T T +K+ +++ L
Sbjct: 70 IKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFL 116
Score = 32.4 bits (74), Expect = 0.018
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 12 EAISHAGTCLGILAQDGILLAAEKR 36
I+H T L Q GI++A + R
Sbjct: 70 IKIAHGTTTLAFRFQGGIIVAVDSR 94
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 40.0 bits (94), Expect = 3e-05
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 61 SHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ GT LGI +D +LA + RN K++ D++
Sbjct: 7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNI 50
Score = 30.8 bits (70), Expect = 0.061
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 15 SHAGTCLGILAQDGILLAAEKRLNQDFS 42
+ GT LGI +D +LA + R D+S
Sbjct: 7 DNGGTILGIAGEDFAVLAGDTRNITDYS 34
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 39.9 bits (94), Expect = 3e-05
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 60 ISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ + GT L I +D ++A++ R + S K YKL D
Sbjct: 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKT 50
Score = 30.3 bits (69), Expect = 0.073
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 14 ISHAGTCLGILAQDGILLAAEKRLNQDFS 42
+ + GT L I +D ++A++ RL++ FS
Sbjct: 6 VFNGGTILAIAGEDFAIVASDTRLSEGFS 34
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 39.1 bits (92), Expect = 5e-05
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 60 ISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+S + + + +DG++L A+ R T ++K+ ++HD +
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKI 50
Score = 31.8 bits (73), Expect = 0.022
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 14 ISHAGTCLGILAQDGILLAAEKRL 37
+S + + + +DG++L A+ R
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRT 29
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 39.1 bits (91), Expect = 7e-05
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 58 EAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ H T + + G+++A ++R+T + G K+Y D
Sbjct: 52 AQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYT 98
Score = 32.2 bits (73), Expect = 0.021
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 12 EAISHAGTCLGILAQDGILLAAEKR 36
+ H T + + G+++A ++R
Sbjct: 52 AQLPHGTTIVALKYPGGVVMAGDRR 76
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 39.0 bits (91), Expect = 7e-05
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T + + + G+LLA ++R T L EK+Y +
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYS 41
Score = 28.3 bits (63), Expect = 0.42
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 19 TCLGILAQDGILLAAEKR 36
T + + + G+LLA ++R
Sbjct: 2 TIVALTYKGGVLLAGDRR 19
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 37.5 bits (88), Expect = 2e-04
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 61 SHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ G + + ++ + +AA++R + T +KI+ + D L
Sbjct: 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRL 49
Score = 29.4 bits (67), Expect = 0.17
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 15 SHAGTCLGILAQDGILLAAEKRL 37
+ G + + ++ + +AA++R
Sbjct: 6 YNGGAVMAMKGKNCVAIAADRRF 28
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 37.4 bits (87), Expect = 3e-04
Identities = 7/48 (14%), Positives = 21/48 (43%)
Query: 57 MEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ I + + + +G+++AA+ + L E++ + D+
Sbjct: 35 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNT 82
Score = 30.5 bits (69), Expect = 0.076
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 11 MEAISHAGTCLGILAQDGILLAAEKRLNQDFSFL-PHMSRLYQV 53
+ I + + + +G+++AA+ + + RL V
Sbjct: 35 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPV 78
Score = 36.8 bits (86), Expect = 3e-04
Identities = 2/40 (5%), Positives = 8/40 (20%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ +L E + + ++
Sbjct: 3 HMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAI 42
Score = 26.8 bits (60), Expect = 1.3
Identities = 0/19 (0%), Positives = 1/19 (5%)
Query: 19 TCLGILAQDGILLAAEKRL 37
+
Sbjct: 3 HMQMVPPSAYDRAITVFSP 21
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 36.5 bits (85), Expect = 5e-04
Identities = 7/48 (14%), Positives = 21/48 (43%)
Query: 57 MEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ I + + + +G+++AA+ + L E++ + D+
Sbjct: 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNT 49
Score = 29.6 bits (67), Expect = 0.13
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 11 MEAISHAGTCLGILAQDGILLAAEKRL 37
+ I + + + +G+++AA+
Sbjct: 2 QQPIVTGTSVISMKYDNGVIIAADNLG 28
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 36.4 bits (85), Expect = 5e-04
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 58 EAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ + LG+ + G+++AA+ + L +I ++++S
Sbjct: 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNST 49
Score = 29.9 bits (68), Expect = 0.11
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 12 EAISHAGTCLGILAQDGILLAAEKR 36
+ + LG+ + G+++AA+
Sbjct: 3 NPMVTGTSVLGVKFEGGVVIAADML 27
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 36.4 bits (85), Expect = 5e-04
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T +G++ +DG+++A EKR T ++KIY++ D +
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRM 41
Score = 27.1 bits (61), Expect = 1.1
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 19 TCLGILAQDGILLAAEKRL 37
T +G++ +DG+++A EKR
Sbjct: 2 TTVGLVCKDGVVMATEKRA 20
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 36.4 bits (85), Expect = 6e-04
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T L Q GI++A + R T T +++ +++ L
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFL 41
Score = 27.2 bits (61), Expect = 0.87
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 19 TCLGILAQDGILLAAEKR 36
T L Q GI++A + R
Sbjct: 2 TTLAFRFQGGIIVAVDSR 19
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 36.0 bits (84), Expect = 7e-04
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
LGI QD ++LA+ K T + + +K +L
Sbjct: 3 IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHT 42
Score = 25.6 bits (57), Expect = 3.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 19 TCLGILAQDGILLAAEKR 36
LGI QD ++LA+ K
Sbjct: 3 IILGIRVQDSVILASSKA 20
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 35.6 bits (83), Expect = 0.001
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T + + G+++ ++ R + +K+ LH +
Sbjct: 2 TIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRI 41
Score = 26.4 bits (59), Expect = 2.0
Identities = 3/19 (15%), Positives = 11/19 (57%)
Query: 19 TCLGILAQDGILLAAEKRL 37
T + + G+++ ++ R+
Sbjct: 2 TIMAVEFDGGVVVGSDSRV 20
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 35.3 bits (82), Expect = 0.001
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T L + G+++AA+ R T T +K+ +++ L
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYL 41
Score = 27.6 bits (62), Expect = 0.71
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 19 TCLGILAQDGILLAAEKR 36
T L + G+++AA+ R
Sbjct: 2 TTLAFKFRHGVIVAADSR 19
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 34.1 bits (79), Expect = 0.003
Identities = 7/40 (17%), Positives = 22/40 (55%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+GI D +L+A+++ + ++ +K++K+ + +
Sbjct: 3 YLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKI 42
Score = 26.0 bits (58), Expect = 2.5
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 19 TCLGILAQDGILLAAEKR 36
+GI D +L+A+++
Sbjct: 3 YLIGIQGPDYVLVASDRV 20
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 34.1 bits (79), Expect = 0.003
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 62 HAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKL 100
+ G + + +D + +A + R ++ L EKI+
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY 45
Score = 30.3 bits (69), Expect = 0.078
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 16 HAGTCLGILAQDGILLAAEKRL 37
+ G + + +D + +A + RL
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRL 28
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 34.1 bits (79), Expect = 0.004
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T + + G++L A+ R T ++K+ +HD +
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRI 41
Score = 26.8 bits (60), Expect = 1.3
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 19 TCLGILAQDGILLAAEKRL 37
T + + G++L A+ R
Sbjct: 2 TIMAVQFDGGVVLGADSRT 20
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.075
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 8/30 (26%)
Query: 80 EKRNTNKLLDEGTTSEKIYKLHDS---LNI 106
EK+ KL S K+Y DS L I
Sbjct: 18 EKQALKKL----QASLKLYA-DDSAPALAI 42
>1x1i_A Xanthan lyase; alpha/alpha barrel, beta sandwich; HET: 46M; 1.80A
{Bacillus SP} SCOP: a.102.3.2 b.24.1.1 b.30.5.2 PDB:
1x1h_A* 1x1j_A* 2e22_A* 1j0m_A 1j0n_A* 2e24_A
Length = 752
Score = 27.8 bits (61), Expect = 0.78
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 6 QVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISHAGT 65
++ A +S G DG D SF+ H + Y Y +
Sbjct: 189 KLAAARNGLSGTGIFPYATGGDGF--------YADGSFVQHTTFAYTGGYGSSVLETTAN 240
Query: 66 CLGILAQDGILLAAEKRNT 84
+ +L+ ++ ++
Sbjct: 241 LMYLLSGSTWSVSDPNQSN 259
>3rio_A PTSGHI operon antiterminator; twisted beta sheet, four helix
bundle, transcriptional antitermination, transcription;
1.99A {Bacillus subtilis}
Length = 180
Score = 25.1 bits (55), Expect = 4.5
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 13/76 (17%)
Query: 7 VEYAMEAISHAGTCLGILAQDGILLA-------AEKRLNQDF----SFLPHMSRLYQVEY 55
V+ + + I H + I +A A KR Q F FL LY EY
Sbjct: 85 VDISNDVIYHISNRTNHSLNEHIHIALTDHIAFAIKRQQQGFDMKNPFLMETQSLYPEEY 144
Query: 56 --AMEAISHAGTCLGI 69
A E I G+
Sbjct: 145 QIAKEVIDMINEKAGL 160
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.373
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,584,539
Number of extensions: 84798
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 99
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)