RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6595
(108 letters)
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 79.3 bits (195), Expect = 5e-20
Identities = 43/60 (71%), Positives = 49/60 (81%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108
RLYQVEYAMEAI HAGTCLGILA DG+LLAAE+RN +KLLDE SEKIYKL++ +
Sbjct: 16 RLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSV 75
Score = 61.2 bits (148), Expect = 3e-13
Identities = 30/35 (85%), Positives = 32/35 (91%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRL 37
RLYQVEYAMEAI HAGTCLGILA DG+LLAAE+R
Sbjct: 16 RLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRN 50
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 77.8 bits (191), Expect = 2e-19
Identities = 35/54 (64%), Positives = 49/54 (90%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
RLYQVEYA+E+ISHAGT +GI+A DGI+LAAE++ T+ LL++ T++EK+YKL+D
Sbjct: 17 RLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLND 70
Score = 62.0 bits (150), Expect = 1e-13
Identities = 25/36 (69%), Positives = 33/36 (91%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLN 38
RLYQVEYA+E+ISHAGT +GI+A DGI+LAAE+++
Sbjct: 17 RLYQVEYALESISHAGTAIGIMASDGIVLAAERKVT 52
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 75.8 bits (186), Expect = 8e-19
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
++QVEYA+EA+ +G+ ++ ++L E+R+T KL D T K+ K+ +
Sbjct: 14 HIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHV 69
Score = 59.3 bits (143), Expect = 1e-12
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRL 37
++QVEYA+EA+ +G+ ++ ++L E+R
Sbjct: 14 HIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRS 48
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 73.9 bits (181), Expect = 5e-18
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
L+QVEYA EA+ T +G+ +D ++L EK++ KL DE T KI L D++
Sbjct: 14 HLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDE-RTVRKICALDDNV 68
Score = 61.6 bits (149), Expect = 2e-13
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
L+QVEYA EA+ T +G+ +D ++L EK+ + ++ ++ + ++
Sbjct: 14 HLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNV-CMAF 72
Query: 63 AGT 65
AG
Sbjct: 73 AGL 75
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 73.1 bits (179), Expect = 1e-17
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
R +QVEYA++A+ + T +GI DG++ A EK T+KLL + KI +
Sbjct: 16 RNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDR 68
Score = 64.7 bits (157), Expect = 1e-14
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
R +QVEYA++A+ + T +GI DG++ A EK + ++ V H
Sbjct: 16 RNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVV------DRH 69
Query: 63 AGTCLGILAQDGILL 77
G L DG L
Sbjct: 70 IGCVYSGLIPDGRHL 84
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 72.7 bits (178), Expect = 2e-17
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 49 RLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
RLYQVEYA +AI+ G T + + +D ++ +K+ +KLLD +T ++K+ +
Sbjct: 20 RLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDS-STVTHLFKITE 73
Score = 60.8 bits (147), Expect = 4e-13
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 3 RLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQV 53
RLYQVEYA +AI+ G T + + +D ++ +K++ ++ L+++
Sbjct: 20 RLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKI 71
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 72.0 bits (176), Expect = 2e-17
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108
RL+QVEYA+EAI +G+ + +L A KRN ++L +KI K + + +
Sbjct: 17 RLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSS---YQKKIIKCDEHMGLSL 73
Score = 60.8 bits (147), Expect = 3e-13
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFS 42
RL+QVEYA+EAI +G+ + +L A KR + S
Sbjct: 17 RLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS 56
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 71.7 bits (175), Expect = 4e-17
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108
RL+QVEY++EAI T +GI ++G++L EKR T+ LL+ + EKI ++ +
Sbjct: 12 RLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSI-EKIVEIDRHIGCAM 70
Score = 63.6 bits (154), Expect = 3e-14
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEY++EAI T +GI ++G++L EKR + ++ +++ + +
Sbjct: 12 RLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHI-GCAM 70
Query: 63 AGT 65
+G
Sbjct: 71 SGL 73
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 71.2 bits (174), Expect = 4e-17
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNI 106
R++Q+EYAMEA+ +G+ ++ +L A KR ++L +KI + + + I
Sbjct: 15 RIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAA---HQKKILHVDNHIGI 69
Score = 60.4 bits (146), Expect = 5e-13
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRL 37
R++Q+EYAMEA+ +G+ ++ +L A KR
Sbjct: 15 RIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRA 49
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 71.3 bits (174), Expect = 4e-17
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108
+L Q++YA+ A+ T LGI A +G+++A EK++++ L T K+ L + +
Sbjct: 17 KLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMS-ETLSKVSLLTPDIGAVY 75
Score = 61.3 bits (148), Expect = 2e-13
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQ 52
+L Q++YA+ A+ T LGI A +G+++A EK+ + + +S++
Sbjct: 17 KLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSL 66
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 70.9 bits (173), Expect = 6e-17
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108
RL+QVEYA EA+ T LG+ +G+LL ++K+ ++L+++ + EKI + D + +T
Sbjct: 8 RLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQ-NSIEKIQLIDDYVAAVT 66
Score = 62.8 bits (152), Expect = 6e-14
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA EA+ T LG+ +G+LL ++K++ + ++ ++ + A
Sbjct: 8 RLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYV-AAVT 66
Query: 63 AGT 65
+G
Sbjct: 67 SGL 69
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 70.8 bits (173), Expect = 7e-17
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108
RL+QVEY +EAI T +GI +G+ LA EKR T+ L++ + EKI ++ +
Sbjct: 13 RLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDAHIGCAM 71
Score = 64.3 bits (156), Expect = 2e-14
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEY +EAI T +GI +G+ LA EKR+ + ++ +++ + +
Sbjct: 13 RLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHI-GCAM 71
Query: 63 AGT 65
+G
Sbjct: 72 SGL 74
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 70.1 bits (171), Expect = 1e-16
Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
RL+QVEYA EA+ T +GI ++G++L A+KR +KLL++ T EKIYK+ + +
Sbjct: 17 RLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEK-DTIEKIYKIDEHI 71
Score = 62.4 bits (151), Expect = 9e-14
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEYAMEAISH 62
RL+QVEYA EA+ T +GI ++G++L A+KR+ + ++Y+++ + +
Sbjct: 17 RLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHI-CAAT 75
Query: 63 AGT 65
+G
Sbjct: 76 SGL 78
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 69.4 bits (169), Expect = 3e-16
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
+L Q+EYA+ A++ +GI A +G++LA EK+ + L DE + K+ +
Sbjct: 17 KLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDE-RSVHKVEPITK 69
Score = 60.5 bits (146), Expect = 5e-13
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQVEY 55
+L Q+EYA+ A++ +GI A +G++LA EK+ + ++ +
Sbjct: 17 KLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITK 69
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 68.9 bits (168), Expect = 4e-16
Identities = 18/56 (32%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 49 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
R++QVEYAM+A+ ++ T +GI +DG++ EK +KL +E ++++++ + +
Sbjct: 19 RVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHV 73
Score = 60.0 bits (145), Expect = 9e-13
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 3 RLYQVEYAMEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQV 53
R++QVEYAM+A+ ++ T +GI +DG++ EK + RL+ V
Sbjct: 19 RVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNV 69
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 62.8 bits (152), Expect = 8e-14
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 49 RLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
RLYQVEYA +A + L + +D ++ ++K+ +KLLD TT I+ +
Sbjct: 15 RLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDP-TTVSYIFCISR 68
Score = 54.3 bits (130), Expect = 8e-11
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 3 RLYQVEYAMEAISHAG-TCLGILAQDGILLAAEKRLNQDFSFLPHMSRLYQ 52
RLYQVEYA +A + L + +D ++ ++K++ +S ++
Sbjct: 15 RLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFC 65
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 57.7 bits (139), Expect = 5e-12
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 52 QVEYAMEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ E A + I+ + + + +DG+L AE + T K+ +L+D L
Sbjct: 8 RSELARKGIARGRSVVVLTFRDGVLFVAENPS--------TALHKVSELYDRL 52
Score = 51.2 bits (122), Expect = 1e-09
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 6 QVEYAMEAISHAGTCLGILAQDGILLAAEKR 36
+ E A + I+ + + + +DG+L AE
Sbjct: 8 RSELARKGIARGRSVVVLTFRDGVLFVAENP 38
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 49.0 bits (116), Expect = 6e-09
Identities = 8/51 (15%), Positives = 23/51 (45%)
Query: 58 EAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108
+ + LG+ + G+++AA+ + L +I ++++S +
Sbjct: 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGA 53
Score = 35.1 bits (80), Expect = 6e-04
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 12 EAISHAGTCLGILAQDGILLAAEKRL 37
+ + LG+ + G+++AA+
Sbjct: 3 NPMVTGTSVLGVKFEGGVVIAADMLG 28
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 47.9 bits (113), Expect = 2e-08
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 61 SHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ GT LGI +D +LA + RN K++ D++
Sbjct: 7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNI 50
Score = 35.5 bits (81), Expect = 4e-04
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 15 SHAGTCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQVEYAMEAISHAGTCLGILAQD 73
+ GT LGI +D +LA + R D+S +++ + A D
Sbjct: 7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCG------DNIVMSANGFAAD 60
Query: 74 GILLAAEKRN 83
G L +N
Sbjct: 61 GDALVKRFKN 70
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 47.5 bits (112), Expect = 2e-08
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108
T +GI +D +++A E+R T + +K++++ +
Sbjct: 2 TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTI 45
Score = 29.8 bits (66), Expect = 0.041
Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQV 53
T +GI +D +++A E+R+ + + +L+Q+
Sbjct: 2 TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQI 37
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 47.4 bits (112), Expect = 3e-08
Identities = 7/48 (14%), Positives = 21/48 (43%)
Query: 57 MEAISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ I + + + +G+++AA+ + L E++ + D+
Sbjct: 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNT 49
Score = 34.3 bits (78), Expect = 0.001
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 11 MEAISHAGTCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQV 53
+ I + + + +G+++AA+ + + + RL V
Sbjct: 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPV 45
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 47.1 bits (111), Expect = 3e-08
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNII 107
T +G++ +DG+++A EKR T ++KIY++ D + +
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMT 44
Score = 31.7 bits (71), Expect = 0.010
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQV 53
T +G++ +DG+++A EKR ++YQ+
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQI 37
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 45.9 bits (108), Expect = 8e-08
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T G++ +DGI+L A+ R T ++ KI+ + ++
Sbjct: 2 TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNI 41
Score = 30.9 bits (69), Expect = 0.019
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQV 53
T G++ +DGI+L A+ R + S+++ +
Sbjct: 2 TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFI 37
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 45.7 bits (107), Expect = 1e-07
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 62 HAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ GT L I +D ++A++ R + S K YKL D
Sbjct: 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKT 50
Score = 32.9 bits (74), Expect = 0.003
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 16 HAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSR 49
+ GT L I +D ++A++ RL++ FS S
Sbjct: 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSP 41
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 45.2 bits (106), Expect = 2e-07
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T +G+ +G+++AA+ R+T + K++++ +
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKI 41
Score = 32.1 bits (72), Expect = 0.008
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQVEYAMEAISHAGTCLGILAQDGILL 77
T +G+ +G+++AA+ R Q ++L+++ A D +
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRIS------PKIWCAGAGTAADTEAV 55
Query: 78 A 78
Sbjct: 56 T 56
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 44.7 bits (105), Expect = 2e-07
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T L + G+++AA+ R T T +K+ +++ L
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYL 41
Score = 30.5 bits (68), Expect = 0.024
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQV 53
T L + G+++AA+ R + ++ ++
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEI 37
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 44.8 bits (105), Expect = 2e-07
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T L Q GI++A + R T T +++ +++ L
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFL 41
Score = 30.9 bits (69), Expect = 0.018
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQV 53
T L Q GI++A + R + R+ ++
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEI 37
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 44.4 bits (104), Expect = 3e-07
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 62 HAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
+ G + + ++ + +AA++R + T +KI+ + D
Sbjct: 6 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGD 46
Score = 32.5 bits (73), Expect = 0.006
Identities = 4/34 (11%), Positives = 15/34 (44%)
Query: 16 HAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSR 49
+ G + + ++ + +AA++R + +
Sbjct: 6 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQ 39
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 44.0 bits (103), Expect = 3e-07
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
LGI QD ++LA+ K T + + +K +L
Sbjct: 3 IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHT 42
Score = 29.7 bits (66), Expect = 0.047
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQV 53
LGI QD ++LA+ K + + S L + Q+
Sbjct: 3 IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQL 38
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 44.0 bits (103), Expect = 5e-07
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 60 ISHAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+S + + + +DG++L A+ R T ++K+ ++HD +
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKI 50
Score = 35.1 bits (80), Expect = 7e-04
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 14 ISHAGTCLGILAQDGILLAAEKRLNQDFSFLPHMSR 49
+S + + + +DG++L A+ R ++
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTD 41
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 43.6 bits (102), Expect = 5e-07
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 62 HAGTCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+ G + + +D + +A + R ++ L EKI+
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVF 49
Score = 31.3 bits (70), Expect = 0.013
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 16 HAGTCLGILAQDGILLAAEKRL 37
+ G + + +D + +A + RL
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRL 28
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 43.3 bits (101), Expect = 8e-07
Identities = 7/40 (17%), Positives = 22/40 (55%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
+GI D +L+A+++ + ++ +K++K+ + +
Sbjct: 3 YLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKI 42
Score = 29.4 bits (65), Expect = 0.051
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQVEYAMEAISHAGTCLGILAQDGILL 77
+GI D +L+A+++ + + +++++ A D +
Sbjct: 3 YLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMS------EKILLLCVGEAGDTVQF 56
Query: 78 AAEKRN 83
A +
Sbjct: 57 AEYIQK 62
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 43.2 bits (101), Expect = 8e-07
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T + + G++L A+ R T ++K+ +HD +
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRI 41
Score = 28.9 bits (64), Expect = 0.077
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 19 TCLGILAQDGILLAAEKRL 37
T + + G++L A+ R
Sbjct: 2 TIMAVQFDGGVVLGADSRT 20
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 42.5 bits (99), Expect = 1e-06
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSL 104
T + + + G+LLA ++R T L EK+Y +
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYS 41
Score = 28.7 bits (63), Expect = 0.11
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPH-MSRLYQVEYAMEAISHAGTCLGILAQDGI 75
T + + + G+LLA ++R Q + ++Y + ++ + A I
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTD------EYSAAGIAGTAGIAI 53
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus
subtilis [TaxId: 1423]}
Length = 180
Score = 28.6 bits (63), Expect = 0.098
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 62 HAGTCLGILAQDGILLAAEKRNT 84
HA T + + ++ + + T
Sbjct: 4 HATTIFAVQHKGRSAMSGDGQVT 26
Score = 28.2 bits (62), Expect = 0.14
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 16 HAGTCLGILAQDGILLAAEKR 36
HA T + + ++ + +
Sbjct: 4 HATTIFAVQHKGRSAMSGDGQ 24
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 28.5 bits (63), Expect = 0.11
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHDSLNIIT 108
T L + ++ + + T + K+ KL + +
Sbjct: 2 TILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAG 45
Score = 25.1 bits (54), Expect = 2.1
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPHMSR 49
T L + ++ + ++ + L +R
Sbjct: 2 TILVVRRNGQTVMGGDGQVTFGSTVLKGNAR 32
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 26.3 bits (57), Expect = 0.65
Identities = 3/38 (7%), Positives = 16/38 (42%)
Query: 65 TCLGILAQDGILLAAEKRNTNKLLDEGTTSEKIYKLHD 102
T + + +++ + + + + K+ +L++
Sbjct: 2 TIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYN 39
Score = 23.2 bits (49), Expect = 9.6
Identities = 2/31 (6%), Positives = 14/31 (45%)
Query: 19 TCLGILAQDGILLAAEKRLNQDFSFLPHMSR 49
T + + +++ + +++ + + +R
Sbjct: 2 TIVSVRRNGQVVVGGDGQVSLGNTVMKGNAR 32
>d1f81a_ g.53.1.1 (A:) CREB-binding transcriptional adaptor
protein CBP (p300) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 87
Score = 23.3 bits (50), Expect = 5.0
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 45 PHMSRLYQVEYAMEAISHAGTC 66
P SR ++ ++++ HA C
Sbjct: 2 PQESRRLSIQRCIQSLVHACQC 23
>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress
protein CTC) {Deinococcus radiodurans [TaxId: 1299]}
Length = 175
Score = 23.9 bits (51), Expect = 5.3
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 77 LAAEKRNTNKLLDEGTTSEKIYKLHDSLNI 106
L A+ R + LDE + Y ++++
Sbjct: 3 LTAKPRTPKQKLDESMIAAVAYNKENNVSF 32
>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus
amyloliquefaciens [TaxId: 1390]}
Length = 353
Score = 23.8 bits (51), Expect = 5.7
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 22 GIL-AQDGILLAAEKRLNQDFSFLP 45
G+ AQ+G + ++ NQ+F +P
Sbjct: 302 GLFVAQNGENIDHGQKANQNFKMVP 326
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 22.9 bits (49), Expect = 9.8
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 39 QDFSFLPHMSRLYQVEYAMEAISHAG 64
Q F+ +P ++ L VE +
Sbjct: 90 QQFNLIPLLTALENVELPLIFKYRGA 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.373
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 363,886
Number of extensions: 13891
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 81
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)