BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6597
         (305 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
           I (Steh1)
 pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
           I (Steh1)
          Length = 328

 Score = 31.2 bits (69), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 143 NMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRV---FQNYGDIREVDIPIND 199
           NM+  + GE P  +++   P  W+S + +    +E   R V    + YGD      P+ND
Sbjct: 22  NMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDT--TGAPLND 79

Query: 200 P 200
           P
Sbjct: 80  P 80


>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
           Solanum Tuberosum
 pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
           Solanum Tuberosum
          Length = 328

 Score = 31.2 bits (69), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 143 NMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRV---FQNYGDIREVDIPIND 199
           NM+  + GE P  +++   P  W+S + +    +E   R V    + YGD      P+ND
Sbjct: 22  NMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDT--TGAPLND 79

Query: 200 P 200
           P
Sbjct: 80  P 80


>pdb|1TXD|A Chain A, Crystal Structure Of The Dh/ph Domains Of
           Leukemia-associated Rhogef
 pdb|1X86|A Chain A, Crystal Structure Of The DhPH DOMAINS OF
           LEUKEMIA-Associated Rhogef In Complex With Rhoa
 pdb|1X86|C Chain C, Crystal Structure Of The DhPH DOMAINS OF
           LEUKEMIA-Associated Rhogef In Complex With Rhoa
 pdb|1X86|E Chain E, Crystal Structure Of The DhPH DOMAINS OF
           LEUKEMIA-Associated Rhogef In Complex With Rhoa
 pdb|1X86|G Chain G, Crystal Structure Of The DhPH DOMAINS OF
           LEUKEMIA-Associated Rhogef In Complex With Rhoa
          Length = 385

 Score = 27.3 bits (59), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 144 MNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRA 203
           +NE+   ER     L  L   ++   +R    S + LR++F N  DI ++ I +N+  +A
Sbjct: 29  INELFYTERAHVRTLKVLDQVFYQRVSREGILSPSELRKIFSNLEDILQLHIGLNEQMKA 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,163,502
Number of Sequences: 62578
Number of extensions: 319451
Number of successful extensions: 722
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 10
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)