BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6597
(305 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q02040|AK17A_HUMAN A-kinase anchor protein 17A OS=Homo sapiens GN=AKAP17A PE=1 SV=2
Length = 695
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/191 (57%), Positives = 150/191 (78%), Gaps = 1/191 (0%)
Query: 16 DTSDAKILSAAYQLFLKPVARLNISVQIPELKITGKSLSNYEVIEKIKYWAQPEEFSSLK 75
DTS+A L AY L+LKP+ ++ ISV +P+LK GKS+SN+EV+E++K Q +FS+L+
Sbjct: 9 DTSEAVELCPAYGLYLKPITKMTISVALPQLKQPGKSISNWEVMERLKGMVQNHQFSTLR 68
Query: 76 VTKSTLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPTRHDWD 135
++KST++F+R +GE+EN+S + LA LDG+TIKLSGF+D L+VRA E K DFPTRHDWD
Sbjct: 69 ISKSTMDFIRFEGEVENKSLVKSFLACLDGKTIKLSGFSDILKVRAAEFKIDFPTRHDWD 128
Query: 136 SYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTK-ARPNQPSEAMLRRVFQNYGDIREVD 194
S+FRDAK+MNE PGERPDTI+L LP KWF+ K + +PSE +L +VF+ +G+IR VD
Sbjct: 129 SFFRDAKDMNETLPGERPDTIHLEGLPCKWFALKESGSEKPSEDVLVKVFEKFGEIRNVD 188
Query: 195 IPINDPYRAQM 205
IP+ DPYR +M
Sbjct: 189 IPMLDPYREEM 199
>sp|A2A3V1|AK17B_MOUSE A-kinase anchor protein 17B OS=Mus musculus GN=Akap17b PE=1 SV=2
Length = 959
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 121/196 (61%), Gaps = 12/196 (6%)
Query: 16 DTSDAKILSAAYQLFLKPVARLNISVQIPELKITGKSLSNYEVIEKIKYWAQPEEFSSLK 75
D S+A L AA L+LKP+A+L I+V +PE + SN+EV++++K P++F++++
Sbjct: 8 DNSEATELCAAQHLYLKPIAKLMINVLLPECIEPVRPFSNWEVLDQLKSLICPDQFTTVR 67
Query: 76 VTKSTLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPTRHDWD 135
++KST +F+R +GE E RS + + A+L G+ IKL+G L+V AT+A+ +W+
Sbjct: 68 LSKSTKDFIRFEGEAETRSLVQILKAKLHGKIIKLNGLKTDLKVVATDAQG------EWE 121
Query: 136 SYFRDA-----KNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQ-PSEAMLRRVFQNYGD 189
+ ++ + E + PD+IY LP KWF+ K + P E +LR VF+++G
Sbjct: 122 HFPKEKEASVIEGAEEQDHDKGPDSIYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFGK 181
Query: 190 IREVDIPINDPYRAQM 205
I+ VDIP+ DPYR M
Sbjct: 182 IKNVDIPMLDPYREVM 197
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 OS=Caenorhabditis
elegans GN=rsp-4 PE=3 SV=1
Length = 196
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 144 MNEMKPGER---PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDP 200
M+ G+R PD L++L + S + PN LRR F+ YGDI +V IP D
Sbjct: 1 MSRGGGGDRRAAPDINGLTSLKIDNLSYQTTPND-----LRRTFERYGDIGDVHIP-RDK 54
Query: 201 YRAQMKPY 208
Y Q K +
Sbjct: 55 YSRQSKGF 62
>sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2
PE=1 SV=1
Length = 420
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 165 WFSTKARPNQPSEAMLRRVFQNYGDIREVDIPIN 198
WFS A NQ EA L ++ NY IR+ +IP++
Sbjct: 311 WFSLVASSNQEGEASLPQIPANYLRIRDGNIPVS 344
>sp|Q8LAL0|SCO12_ARATH Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana
GN=HCC2 PE=2 SV=1
Length = 276
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 83 FVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDF-PTRHDWDSYFRDA 141
FV LD + + S L L D R + L+G A +R A E + F + D + Y D
Sbjct: 178 FVTLDPQRDTPSHLHAYLKEFDSRILGLTGTASAMRQMAQEYRVYFKKVQEDGEDYLVDT 237
Query: 142 KNMNEMKPGERPDTIYLSNLP---VKWFSTKARPNQPSEAMLRRV 183
+ +YL N V+ F + P++ S+ +L+ V
Sbjct: 238 SH-----------NMYLINPKMEIVRCFGVEYNPDELSQELLKEV 271
>sp|O28988|ARGB_ARCFU Probable acetylglutamate kinase OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=argB PE=3 SV=1
Length = 290
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 57 EVIEKI-KYWAQPEEFSSLKVT-KSTLEFVR--LDGEIENRSKLLPVLARLDGRTIKLSG 112
E+ EK+ K+ +P+ L+VT K T+E V LDG++ SK++ R G+ + LSG
Sbjct: 63 EISEKMEKFGLKPKFVEGLRVTDKETMEVVEMVLDGKV--NSKIVTTFIRNGGKAVGLSG 120
Query: 113 FADGLRVRA 121
DGL + A
Sbjct: 121 -KDGLLIVA 128
>sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus musculus GN=Cep250 PE=1
SV=4
Length = 2414
Score = 31.2 bits (69), Expect = 8.7, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 67 QPEEFSSLKVTKSTLEFVRLDGEI--ENRSKLLPVLARLDGRTIKLSGFADGLRVRATEA 124
Q E S L + LE RL+GE+ + R ++ LAR + ++LSG + L+ +
Sbjct: 536 QSESLSELLTLREALESSRLEGELLKQERVEVAAALARAEQSIVELSGSENSLKAEVADL 595
Query: 125 K 125
+
Sbjct: 596 R 596
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,434,879
Number of Sequences: 539616
Number of extensions: 4228681
Number of successful extensions: 9393
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 9387
Number of HSP's gapped (non-prelim): 12
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)