Query psy6597
Match_columns 305
No_of_seqs 65 out of 67
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 22:10:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2891|consensus 100.0 2.2E-95 5E-100 685.7 9.5 269 11-293 6-282 (445)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.3 2.1E-05 4.5E-10 73.1 14.0 78 155-277 271-348 (352)
3 TIGR01659 sex-lethal sex-letha 97.7 0.00034 7.4E-09 68.0 11.4 119 71-249 134-259 (346)
4 TIGR01628 PABP-1234 polyadenyl 97.6 0.0013 2.7E-08 66.1 14.1 141 50-249 97-243 (562)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.4 0.0042 9.2E-08 62.0 14.7 145 52-249 13-158 (481)
6 PF00076 RRM_1: RNA recognitio 97.4 0.00054 1.2E-08 48.6 6.0 63 156-249 1-63 (70)
7 TIGR01642 U2AF_lg U2 snRNP aux 97.4 0.0016 3.4E-08 63.9 10.9 70 150-249 292-361 (509)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.3 0.008 1.7E-07 60.1 15.6 168 59-275 290-477 (481)
9 TIGR01642 U2AF_lg U2 snRNP aux 97.2 0.0094 2E-07 58.6 14.7 150 82-274 340-498 (509)
10 TIGR01648 hnRNP-R-Q heterogene 97.2 0.011 2.5E-07 61.5 15.3 137 51-249 148-293 (578)
11 TIGR01628 PABP-1234 polyadenyl 97.2 0.008 1.7E-07 60.5 13.7 129 82-249 222-350 (562)
12 TIGR01622 SF-CC1 splicing fact 97.1 0.003 6.5E-08 61.3 10.0 81 153-278 186-266 (457)
13 TIGR01645 half-pint poly-U bin 97.1 0.0047 1E-07 64.7 11.8 130 83-277 153-283 (612)
14 KOG0127|consensus 97.1 0.0014 3E-08 68.0 7.2 157 65-278 28-196 (678)
15 PF13893 RRM_5: RNA recognitio 97.0 0.0025 5.5E-08 45.0 6.0 45 180-249 1-45 (56)
16 smart00362 RRM_2 RNA recogniti 96.9 0.0043 9.2E-08 42.6 6.6 63 155-249 1-63 (72)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 96.8 0.0067 1.5E-07 56.5 8.6 68 152-249 2-69 (352)
18 PLN03134 glycine-rich RNA-bind 96.7 0.012 2.6E-07 50.4 9.2 71 149-249 30-100 (144)
19 cd00590 RRM RRM (RNA recogniti 96.7 0.009 2E-07 41.1 6.7 64 155-249 1-64 (74)
20 smart00360 RRM RNA recognition 96.6 0.0068 1.5E-07 41.3 5.7 55 175-249 8-62 (71)
21 TIGR01622 SF-CC1 splicing fact 96.4 0.1 2.2E-06 50.8 14.3 61 178-277 387-447 (457)
22 PLN03213 repressor of silencin 96.3 0.016 3.5E-07 60.1 8.3 72 144-249 1-74 (759)
23 PLN03120 nucleic acid binding 95.9 0.03 6.5E-07 53.4 7.7 76 154-278 5-80 (260)
24 TIGR01659 sex-lethal sex-letha 95.9 0.018 4E-07 56.1 6.4 65 155-249 109-173 (346)
25 PF14259 RRM_6: RNA recognitio 95.8 0.037 8E-07 40.0 6.1 63 156-249 1-63 (70)
26 TIGR01648 hnRNP-R-Q heterogene 95.6 0.042 9.2E-07 57.4 8.0 69 150-249 55-123 (578)
27 KOG0110|consensus 95.5 0.032 6.9E-07 59.3 6.9 90 154-292 614-705 (725)
28 TIGR01645 half-pint poly-U bin 95.4 0.03 6.5E-07 58.9 6.2 66 154-249 108-173 (612)
29 KOG0144|consensus 95.2 0.091 2E-06 53.7 8.8 141 51-249 44-189 (510)
30 KOG4207|consensus 95.2 0.028 6E-07 52.9 4.8 57 173-249 23-79 (256)
31 KOG0125|consensus 95.2 0.037 8E-07 54.8 5.7 67 151-249 94-160 (376)
32 smart00361 RRM_1 RNA recogniti 94.8 0.05 1.1E-06 40.5 4.4 54 178-249 3-61 (70)
33 PLN03121 nucleic acid binding 93.8 0.17 3.8E-06 48.0 6.7 62 154-249 6-67 (243)
34 KOG0113|consensus 93.6 0.17 3.8E-06 49.6 6.4 82 150-276 98-179 (335)
35 KOG1190|consensus 93.4 0.078 1.7E-06 53.9 3.7 71 173-284 160-230 (492)
36 KOG0117|consensus 91.6 0.49 1.1E-05 48.7 6.7 168 17-249 138-317 (506)
37 KOG0107|consensus 91.5 0.36 7.9E-06 44.4 5.2 60 155-249 12-71 (195)
38 KOG0111|consensus 91.0 0.32 6.9E-06 46.5 4.6 73 147-249 4-76 (298)
39 KOG0148|consensus 90.7 2.9 6.2E-05 41.0 10.7 137 59-249 76-224 (321)
40 KOG0130|consensus 89.8 0.31 6.7E-06 43.6 3.1 75 171-284 80-154 (170)
41 KOG0114|consensus 89.2 1.4 3E-05 38.0 6.4 70 147-249 12-81 (124)
42 KOG0145|consensus 89.1 3 6.6E-05 40.9 9.5 56 172-249 287-344 (360)
43 COG0724 RNA-binding proteins ( 88.9 1.7 3.7E-05 36.3 6.8 67 153-249 115-181 (306)
44 KOG0120|consensus 88.8 0.7 1.5E-05 47.9 5.3 53 180-249 426-478 (500)
45 KOG0147|consensus 88.5 1.1 2.3E-05 47.0 6.4 64 156-249 281-344 (549)
46 KOG0123|consensus 82.4 5.1 0.00011 39.8 7.6 148 47-250 82-233 (369)
47 KOG0146|consensus 82.1 4.4 9.5E-05 39.9 6.8 72 172-276 28-99 (371)
48 KOG0106|consensus 82.0 1.6 3.5E-05 40.9 3.7 136 55-249 15-157 (216)
49 KOG0116|consensus 80.7 2.5 5.4E-05 43.0 4.9 71 149-249 284-358 (419)
50 KOG0126|consensus 80.7 0.15 3.3E-06 47.3 -3.4 91 131-278 25-115 (219)
51 KOG0112|consensus 80.5 1.9 4.1E-05 47.7 4.1 63 177-278 469-531 (975)
52 KOG4206|consensus 78.8 6.1 0.00013 37.3 6.4 66 151-249 6-76 (221)
53 KOG1855|consensus 75.9 2.5 5.3E-05 43.6 3.2 105 106-245 202-306 (484)
54 KOG4212|consensus 75.5 8.3 0.00018 40.2 6.8 76 149-274 532-607 (608)
55 KOG4660|consensus 71.2 5.1 0.00011 42.1 4.2 52 173-249 85-136 (549)
56 KOG1190|consensus 69.1 12 0.00025 38.7 6.1 53 172-249 307-359 (492)
57 KOG0122|consensus 67.9 15 0.00032 35.6 6.2 70 155-254 191-260 (270)
58 KOG0105|consensus 67.0 7.5 0.00016 36.6 4.0 60 153-245 6-65 (241)
59 KOG0415|consensus 66.5 4.2 9.2E-05 41.3 2.4 40 178-237 254-293 (479)
60 KOG0131|consensus 64.7 23 0.0005 33.1 6.6 56 175-249 108-163 (203)
61 PF08777 RRM_3: RNA binding mo 63.5 18 0.00039 29.8 5.2 50 173-248 11-60 (105)
62 KOG2314|consensus 62.6 13 0.00029 39.7 5.2 68 155-249 60-129 (698)
63 KOG0153|consensus 59.9 43 0.00093 34.0 8.0 77 136-249 209-287 (377)
64 KOG0127|consensus 55.2 57 0.0012 35.1 8.3 86 154-278 293-378 (678)
65 KOG0123|consensus 54.3 21 0.00046 35.5 4.9 54 173-249 8-61 (369)
66 PF14605 Nup35_RRM_2: Nup53/35 53.9 32 0.00069 25.0 4.6 19 178-196 15-33 (53)
67 KOG0108|consensus 53.4 46 0.00099 34.2 7.2 80 154-278 19-98 (435)
68 KOG0124|consensus 48.3 13 0.00029 38.1 2.4 23 173-195 220-242 (544)
69 KOG0144|consensus 45.3 52 0.0011 34.4 6.1 57 173-249 44-100 (510)
70 KOG0124|consensus 40.2 45 0.00097 34.4 4.7 56 174-249 124-179 (544)
71 KOG2202|consensus 38.6 18 0.0004 34.9 1.7 47 182-249 87-134 (260)
72 KOG0145|consensus 33.2 97 0.0021 30.8 5.6 54 176-249 54-107 (360)
73 PF11736 DUF3299: Protein of u 32.6 17 0.00037 31.9 0.4 27 92-118 42-68 (146)
74 KOG0533|consensus 29.6 2.2E+02 0.0047 27.3 7.2 86 133-249 59-148 (243)
75 KOG0109|consensus 25.9 56 0.0012 32.7 2.7 34 162-196 2-35 (346)
76 KOG0131|consensus 22.9 65 0.0014 30.2 2.3 67 153-249 9-75 (203)
77 COG3495 Uncharacterized protei 22.6 33 0.00071 31.1 0.3 30 88-118 55-84 (166)
78 KOG0147|consensus 22.1 2.4E+02 0.0052 30.2 6.5 61 177-278 468-528 (549)
79 KOG3152|consensus 21.8 36 0.00078 33.3 0.5 116 152-292 73-195 (278)
80 KOG0129|consensus 21.8 6.6E+02 0.014 26.9 9.5 119 83-244 310-432 (520)
81 COG5175 MOT2 Transcriptional r 21.2 2E+02 0.0044 29.6 5.5 86 154-275 115-200 (480)
82 KOG0148|consensus 20.8 1.7E+02 0.0037 29.1 4.8 55 175-249 74-128 (321)
83 PF10309 DUF2414: Protein of u 20.2 48 0.001 25.5 0.8 26 151-187 3-28 (62)
No 1
>KOG2891|consensus
Probab=100.00 E-value=2.2e-95 Score=685.73 Aligned_cols=269 Identities=39% Similarity=0.644 Sum_probs=257.3
Q ss_pred eeeeccC-CcceecccccceeeeceeEEEEEEecCCCccCCCcCchHHHHHHHHHhcCCCCcceeeeecCCcceEEeecc
Q psy6597 11 FSYCTDT-SDAKILSAAYQLFLKPVARLNISVQIPELKITGKSLSNYEVIEKIKYWAQPEEFSSLKVTKSTLEFVRLDGE 89 (305)
Q Consensus 11 ~~~~~d~-sda~~L~~~~~LyLKPiaklnIsV~LP~lk~pgksISnWEVmEkLk~~i~P~~fs~lkV~ksTlefiRFEgE 89 (305)
.+.++|+ |+|++||+++||||||+|++.|||.||+++.||+||||||+||+||.+|+|+||+++||++|+.+||+||||
T Consensus 6 ~tald~lgseaedf~kaq~lylkpia~ikisv~lpql~ipgksisnwdlmerlk~aid~~q~dsckiresnid~iifeae 85 (445)
T KOG2891|consen 6 ATALDDLGSEAEDFCKAQGLYLKPIAKIKISVALPQLKIPGKSISNWDLMERLKGAIDNHQFDSCKIRESNIDFIIFEAE 85 (445)
T ss_pred hhHHhhhhhHHHhhhhhcceeeccceeEEEEEecccccCCCcccchHHHHHHHHhhcccccccceeecccccceEEeeHh
Confidence 4778888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccC
Q psy6597 90 IENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTK 169 (305)
Q Consensus 90 ~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~ 169 (305)
++|+++++..++.|||.+||||||.+.|||+++|+|.|||+|||||+||+++++||||+||||||||||.||||+|||-+
T Consensus 86 l~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lk 165 (445)
T KOG2891|consen 86 LENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALK 165 (445)
T ss_pred hhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred C--CCCCCcHHHHHHHHhccCcceeecCCCCCcccccccc--CCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHH
Q psy6597 170 A--RPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKP--YISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDII 245 (305)
Q Consensus 170 ~--~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~--~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aL 245 (305)
. ..+.|||.+|+.+|++||.|||||||||||||+.|.. +|..+++|+||++++|+|||||. +|.||..||++|
T Consensus 166 edg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfm---eykgfa~amdal 242 (445)
T KOG2891|consen 166 EDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFM---EYKGFAQAMDAL 242 (445)
T ss_pred ccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHH---HHHhHHHHHHHH
Confidence 4 4566999999999999999999999999999999964 56669999999999999999999 999999999999
Q ss_pred hCCCccceeeeecccCCCCCCcceEEEEEEEec---chhhHHHHHhhhhhc
Q psy6597 246 SGMDYTTIIMLKASRKTSGGASKSMCVTYVVMC---MAMEISALHALHLTL 293 (305)
Q Consensus 246 rGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~~---~~~~~~~~~~r~~~~ 293 (305)
|||| |++|++|| -|.||.+||| .|||+-+|-+|..-|
T Consensus 243 r~~k----~akk~d~~-------ffqanvkvdfdrsrhlsevqiakraeer 282 (445)
T KOG2891|consen 243 RGMK----LAKKGDDG-------FFQANVKVDFDRSRHLSEVQIAKRAEER 282 (445)
T ss_pred hcch----HHhhcCCc-------ccccccccccchhhhhhHHHHHHHHHHH
Confidence 9999 99999888 6889999999 899999999986544
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.27 E-value=2.1e-05 Score=73.12 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=61.3
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
+|++.|||-.| +++-|+.+|++||.|.+|.|+-+ + .+ +. .+ --+||+|. .
T Consensus 271 ~lfV~NL~~~~----------~e~~L~~~F~~fG~v~~v~i~~d-~----~t--~~-sk---------G~aFV~F~---~ 320 (352)
T TIGR01661 271 CIFVYNLSPDT----------DETVLWQLFGPFGAVQNVKIIRD-L----TT--NQ-CK---------GYGFVSMT---N 320 (352)
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHhCCCeEEEEEeEc-C----CC--CC-cc---------ceEEEEEC---C
Confidence 69999999765 67889999999999999999631 1 01 11 12 23599999 9
Q ss_pred hhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEEe
Q psy6597 235 HVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVVM 277 (305)
Q Consensus 235 y~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~ 277 (305)
..+-.+||++|.|.. | +| +.|.|+|+.+
T Consensus 321 ~~~A~~Ai~~lnG~~----~-----~g------r~i~V~~~~~ 348 (352)
T TIGR01661 321 YDEAAMAILSLNGYT----L-----GN------RVLQVSFKTN 348 (352)
T ss_pred HHHHHHHHHHhCCCE----E-----CC------eEEEEEEccC
Confidence 999999999999998 6 36 4889988764
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.71 E-value=0.00034 Score=67.98 Aligned_cols=119 Identities=17% Similarity=0.290 Sum_probs=80.5
Q ss_pred cceeeeecCCc-------ceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCCCCCCchhHhhhhccc
Q psy6597 71 FSSLKVTKSTL-------EFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPTRHDWDSYFRDAKN 143 (305)
Q Consensus 71 fs~lkV~ksTl-------efiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dFPtrhdWdsfFrdak~ 143 (305)
...++|.+... -||.|+-+ ...+..++.|||+.|. | ..|+|.. +++. .
T Consensus 134 V~~v~i~~d~~tg~srGyaFVeF~~~----e~A~~Ai~~LnG~~l~--g--r~i~V~~--a~p~------~--------- 188 (346)
T TIGR01659 134 INTCRIMRDYKTGYSFGYAFVDFGSE----ADSQRAIKNLNGITVR--N--KRLKVSY--ARPG------G--------- 188 (346)
T ss_pred EEEEEEEecCCCCccCcEEEEEEccH----HHHHHHHHHcCCCccC--C--ceeeeec--cccc------c---------
Confidence 45666654322 58999543 4466778889997763 3 2344432 2210 0
Q ss_pred CCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeE
Q psy6597 144 MNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIF 223 (305)
Q Consensus 144 m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~F 223 (305)
......+|+|.|||-.+ +|+-|+.+|++||+|..+.|+.+ ..+ +.. + -
T Consensus 189 -----~~~~~~~lfV~nLp~~v----------tee~L~~~F~~fG~V~~v~i~~d-----~~t--g~~-k---------G 236 (346)
T TIGR01659 189 -----ESIKDTNLYVTNLPRTI----------TDDQLDTIFGKYGQIVQKNILRD-----KLT--GTP-R---------G 236 (346)
T ss_pred -----cccccceeEEeCCCCcc----------cHHHHHHHHHhcCCEEEEEEeec-----CCC--Ccc-c---------e
Confidence 01234589999999654 67889999999999999999642 111 111 1 2
Q ss_pred EEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 224 KTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 224 eayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
-+||+|. ...+-.+|+++|.|+.
T Consensus 237 ~aFV~F~---~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 237 VAFVRFN---KREEAQEAISALNNVI 259 (346)
T ss_pred EEEEEEC---CHHHHHHHHHHhCCCc
Confidence 4899999 9999999999999987
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.61 E-value=0.0013 Score=66.13 Aligned_cols=141 Identities=19% Similarity=0.276 Sum_probs=88.9
Q ss_pred CCcCchHHHHHHHHHhcCCCCcceeeeecCC------cceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeec
Q psy6597 50 GKSLSNYEVIEKIKYWAQPEEFSSLKVTKST------LEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATE 123 (305)
Q Consensus 50 gksISnWEVmEkLk~~i~P~~fs~lkV~ksT------lefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~E 123 (305)
.+++++=+|.+-+...= ...+++|.+.. --||.|+-+ ...+..+++|||..+ .|- .|.+..
T Consensus 97 p~~~~~~~L~~~F~~~G---~i~~~~i~~~~~g~skg~afV~F~~~----e~A~~Ai~~lng~~~--~~~----~i~v~~ 163 (562)
T TIGR01628 97 DKSVDNKALFDTFSKFG---NILSCKVATDENGKSRGYGFVHFEKE----ESAKAAIQKVNGMLL--NDK----EVYVGR 163 (562)
T ss_pred CccCCHHHHHHHHHhcC---CcceeEeeecCCCCcccEEEEEECCH----HHHHHHHHHhcccEe--cCc----eEEEec
Confidence 35677766666655432 23345554432 237888644 345677888888754 332 333322
Q ss_pred cCCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCcccc
Q psy6597 124 AKPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRA 203 (305)
Q Consensus 124 ak~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~ 203 (305)
.+ .+.+ + +..+.....+|++.|||-.| +++.|+.+|+.||+|..+.|..+
T Consensus 164 ~~----~~~~-----~------~~~~~~~~~~l~V~nl~~~~----------tee~L~~~F~~fG~i~~~~i~~~----- 213 (562)
T TIGR01628 164 FI----KKHE-----R------EAAPLKKFTNLYVKNLDPSV----------NEDKLRELFAKFGEITSAAVMKD----- 213 (562)
T ss_pred cc----cccc-----c------ccccccCCCeEEEeCCCCcC----------CHHHHHHHHHhcCCEEEEEEEEC-----
Confidence 11 1100 0 01123455789999998554 67889999999999999988431
Q ss_pred ccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 204 QMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 204 ~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
..+. ..--+||+|. +..+-.+|++.|.|..
T Consensus 214 ----~~g~---------~~G~afV~F~---~~e~A~~Av~~l~g~~ 243 (562)
T TIGR01628 214 ----GSGR---------SRGFAFVNFE---KHEDAAKAVEEMNGKK 243 (562)
T ss_pred ----CCCC---------cccEEEEEEC---CHHHHHHHHHHhCCcE
Confidence 1111 1223799999 9999999999999998
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.41 E-value=0.0042 Score=62.04 Aligned_cols=145 Identities=10% Similarity=0.129 Sum_probs=85.6
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeecC-CcceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCCCC
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTKS-TLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPT 130 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~ks-TlefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dFPt 130 (305)
.+++=||.+.+..+= ....+++.++ .--||-|+-+-+ .+..++.|++.-+.|.|- .|+|.-+..+. -.+
T Consensus 13 ~~te~~L~~~f~~fG---~V~~v~i~~~k~~afVef~~~e~----A~~Ai~~~~~~~~~l~g~--~l~v~~s~~~~-~~~ 82 (481)
T TIGR01649 13 DVVEADLVEALIPFG---PVSYVMMLPGKRQALVEFEDEES----AKACVNFATSVPIYIRGQ--PAFFNYSTSQE-IKR 82 (481)
T ss_pred CCCHHHHHHHHHhcC---CeeEEEEECCCCEEEEEeCchHH----HHHHHHHhhcCCceEcCe--EEEEEecCCcc-ccc
Confidence 466666666555432 2344555443 345788864433 455666554444556664 34444332110 000
Q ss_pred CCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCC
Q psy6597 131 RHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYIS 210 (305)
Q Consensus 131 rhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~ 210 (305)
..+ .+.+. ......-+|++.|||.. -+++.|+++|+.||+|..|.|. .. .
T Consensus 83 ~~~--------~~~~~-~~~~~~~~v~v~nl~~~----------vt~~~L~~~F~~~G~V~~v~i~---------~~--~ 132 (481)
T TIGR01649 83 DGN--------SDFDS-AGPNKVLRVIVENPMYP----------ITLDVLYQIFNPYGKVLRIVTF---------TK--N 132 (481)
T ss_pred CCC--------CcccC-CCCCceEEEEEcCCCCC----------CCHHHHHHHHhccCCEEEEEEE---------ec--C
Confidence 000 00011 11223347899998732 3578899999999999999982 21 1
Q ss_pred CCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 211 GMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 211 ~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
+ .+.|||||+ +..+-.+|++.|.|..
T Consensus 133 ~----------~~~afVef~---~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 133 N----------VFQALVEFE---SVNSAQHAKAALNGAD 158 (481)
T ss_pred C----------ceEEEEEEC---CHHHHHHHHHHhcCCc
Confidence 1 134999999 9999999999999999
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.39 E-value=0.00054 Score=48.56 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=50.7
Q ss_pred EEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCCh
Q psy6597 156 IYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDH 235 (305)
Q Consensus 156 I~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey 235 (305)
|++.|||..+ ++.-|++.|+.||+|..+.+... . + +...--|||+|+ ..
T Consensus 1 l~v~nlp~~~----------t~~~l~~~f~~~g~i~~~~~~~~--------~--~--------~~~~~~a~V~F~---~~ 49 (70)
T PF00076_consen 1 LYVGNLPPDV----------TEEELRDFFSQFGKIESIKVMRN--------S--S--------GKSKGYAFVEFE---SE 49 (70)
T ss_dssp EEEESETTTS----------SHHHHHHHHHTTSTEEEEEEEEE--------T--T--------SSEEEEEEEEES---SH
T ss_pred cEEcCCCCcC----------CHHHHHHHHHHhhhccccccccc--------c--c--------ccccceEEEEEc---CH
Confidence 6788888655 78889999999999999988442 0 1 123445799999 99
Q ss_pred hHHHHHHHHHhCCC
Q psy6597 236 VTMFIQVDIISGMD 249 (305)
Q Consensus 236 ~~F~kAM~aLrGmk 249 (305)
.+..+|++.|.|.+
T Consensus 50 ~~a~~a~~~l~g~~ 63 (70)
T PF00076_consen 50 EDAEKALEELNGKK 63 (70)
T ss_dssp HHHHHHHHHHTTEE
T ss_pred HHHHHHHHHcCCCE
Confidence 99999999999977
No 7
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.36 E-value=0.0016 Score=63.94 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=55.3
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
.+.+.+|+|.|||-.| ++..|+.+|+.||.|..+.|.. |+ . .+..++ -|||+|
T Consensus 292 ~~~~~~l~v~nlp~~~----------~~~~l~~~f~~~G~i~~~~~~~-~~-----~--~g~~~g---------~afv~f 344 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYL----------GEDQIKELLESFGDLKAFNLIK-DI-----A--TGLSKG---------YAFCEY 344 (509)
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEe-cC-----C--CCCcCe---------EEEEEE
Confidence 3567899999999765 6788999999999999999842 11 0 111122 389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|+++|.|+.
T Consensus 345 ~---~~~~a~~A~~~l~g~~ 361 (509)
T TIGR01642 345 K---DPSVTDVAIAALNGKD 361 (509)
T ss_pred C---CHHHHHHHHHHcCCCE
Confidence 9 9999999999999998
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.33 E-value=0.008 Score=60.10 Aligned_cols=168 Identities=17% Similarity=0.247 Sum_probs=98.0
Q ss_pred HHHHHHhcCCC-CcceeeeecCC--cceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCC-CCCCCch
Q psy6597 59 IEKIKYWAQPE-EFSSLKVTKST--LEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPD-FPTRHDW 134 (305)
Q Consensus 59 mEkLk~~i~P~-~fs~lkV~ksT--lefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~d-FPtrhdW 134 (305)
-+.|+++...- ....++|.+.. --||.|+- .......++.|||..| .| ..|+|.-+..+.. .|....+
T Consensus 290 ~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~----~~~A~~Ai~~lng~~l--~g--~~l~v~~s~~~~~~~~~~~~~ 361 (481)
T TIGR01649 290 CDRLFNLFCVYGNVERVKFMKNKKETALIEMAD----PYQAQLALTHLNGVKL--FG--KPLRVCPSKQQNVQPPREGQL 361 (481)
T ss_pred HHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECC----HHHHHHHHHHhCCCEE--CC--ceEEEEEcccccccCCCCCcC
Confidence 46777777652 35567776543 45788853 3335677788888765 45 4566654422221 1211111
Q ss_pred hH---hhhhc--ccCCCCC-CC-------CCC-CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCc--ceeecCCCC
Q psy6597 135 DS---YFRDA--KNMNEMK-PG-------ERP-DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGD--IREVDIPIN 198 (305)
Q Consensus 135 ds---fFrda--k~m~E~k-pg-------eRP-DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~--IR~vDIP~l 198 (305)
+. -|++- ...+..+ ++ ..| .|||+.|||-.. +++-|+.+|+.||. |..+.|
T Consensus 362 ~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~----------tee~L~~lF~~~G~~~i~~ik~--- 428 (481)
T TIGR01649 362 DDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSV----------SEEDLKELFAENGVHKVKKFKF--- 428 (481)
T ss_pred cCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCC----------CHHHHHHHHHhcCCccceEEEE---
Confidence 10 01100 0000100 11 123 489999999543 57789999999998 777766
Q ss_pred CccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEE
Q psy6597 199 DPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYV 275 (305)
Q Consensus 199 Dpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~ 275 (305)
+.. .++.+ . -+||+|+ ...+-.+|+.+|-|+. | .+..| .+.+.|+++|.
T Consensus 429 ------~~~-~~~~~--------~-~gfVeF~---~~e~A~~Al~~ln~~~----l--~~~~~---~~~~~lkv~fs 477 (481)
T TIGR01649 429 ------FPK-DNERS--------K-MGLLEWE---SVEDAVEALIALNHHQ----L--NEPNG---SAPYHLKVSFS 477 (481)
T ss_pred ------ecC-CCCcc--------e-eEEEEcC---CHHHHHHHHHHhcCCc----c--CCCCC---CccceEEEEec
Confidence 110 01101 1 2899999 9999999999999999 6 33333 34467777764
No 9
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.23 E-value=0.0094 Score=58.57 Aligned_cols=150 Identities=16% Similarity=0.168 Sum_probs=83.2
Q ss_pred ceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCCCCCCchh--H-hhhhcccCCC--CCCC-CCCCe
Q psy6597 82 EFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPTRHDWD--S-YFRDAKNMNE--MKPG-ERPDT 155 (305)
Q Consensus 82 efiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dFPtrhdWd--s-fFrdak~m~E--~kpg-eRPDT 155 (305)
-||-|+ +....+..++.|||..| .|- .|+|.-+.....-+..+.-+ . .......... ...+ .-.-+
T Consensus 340 afv~f~----~~~~a~~A~~~l~g~~~--~~~--~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v 411 (509)
T TIGR01642 340 AFCEYK----DPSVTDVAIAALNGKDT--GDN--KLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKV 411 (509)
T ss_pred EEEEEC----CHHHHHHHHHHcCCCEE--CCe--EEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceE
Confidence 367774 44557788899999876 343 35555442211111111000 0 0000001111 0112 22346
Q ss_pred EEeCCCcccccccCCCCCCC---cHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 156 IYLSNLPVKWFSTKARPNQP---SEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 156 I~l~gLP~rWFa~~~~~~kP---Se~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
|+|.+++.-+ .-..+.. -.+.|+..|++||.|..|.||-..+-+.. + .+. -.|||+|+
T Consensus 412 ~~l~N~~~~~---~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~----~-----~~~-----G~~fV~F~-- 472 (509)
T TIGR01642 412 VQLTNLVTGD---DLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNS----T-----PGV-----GKVFLEYA-- 472 (509)
T ss_pred EEeccCCchh---HhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCc----C-----CCc-----ceEEEEEC--
Confidence 8888886433 1001111 12458899999999999999753221111 1 111 25899999
Q ss_pred CChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEE
Q psy6597 233 TDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTY 274 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~ 274 (305)
+..+-.+|+.+|.|++ + +| +.|+|+|
T Consensus 473 -~~e~A~~A~~~lnGr~----~-----~g------r~v~~~~ 498 (509)
T TIGR01642 473 -DVRSAEKAMEGMNGRK----F-----ND------RVVVAAF 498 (509)
T ss_pred -CHHHHHHHHHHcCCCE----E-----CC------eEEEEEE
Confidence 9999999999999999 5 25 4788877
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.18 E-value=0.011 Score=61.49 Aligned_cols=137 Identities=16% Similarity=0.213 Sum_probs=86.6
Q ss_pred CcCchHHHHHHHHHhcCCCCcceeeeec--C-----CcceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeec
Q psy6597 51 KSLSNYEVIEKIKYWAQPEEFSSLKVTK--S-----TLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATE 123 (305)
Q Consensus 51 ksISnWEVmEkLk~~i~P~~fs~lkV~k--s-----TlefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~E 123 (305)
++++.=||.|.+........ ..+.... . ---||.|+-+ ......+.+|+...++|.|- .++|..++
T Consensus 148 ~~~TeeeL~eeFskv~egvv-~vIv~~~~~~kgKnRGFAFVeF~s~----edAa~AirkL~~gki~l~Gr--~I~VdwA~ 220 (578)
T TIGR01648 148 KNKKREEILEEFSKVTEGVV-DVIVYHSAADKKKNRGFAFVEYESH----RAAAMARRKLMPGRIQLWGH--VIAVDWAE 220 (578)
T ss_pred cchhhHHHHHHhhcccCCce-EEEEeccccccCccCceEEEEcCCH----HHHHHHHHHhhccceEecCc--eEEEEeec
Confidence 46677777777776543221 1111111 0 1237888643 33445566677666777664 34444433
Q ss_pred cCCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhcc--CcceeecCCCCCcc
Q psy6597 124 AKPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNY--GDIREVDIPINDPY 201 (305)
Q Consensus 124 ak~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~F--G~IR~vDIP~lDpy 201 (305)
.+.+ . +.. ......||+|.|||..+ +|+.|+..|++| |+|.+|.++
T Consensus 221 p~~~-----~------d~~------~~~~~k~LfVgNL~~~~----------tee~L~~~F~~f~~G~I~rV~~~----- 268 (578)
T TIGR01648 221 PEEE-----V------DED------VMAKVKILYVRNLMTTT----------TEEIIEKSFSEFKPGKVERVKKI----- 268 (578)
T ss_pred cccc-----c------ccc------ccccccEEEEeCCCCCC----------CHHHHHHHHHhcCCCceEEEEee-----
Confidence 2211 0 001 12234689999998654 788999999999 999998762
Q ss_pred ccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 202 RAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 202 r~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
. + -|||+|+ +..+-.+||++|.|..
T Consensus 269 ----r-------g---------fAFVeF~---s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 269 ----R-------D---------YAFVHFE---DREDAVKAMDELNGKE 293 (578)
T ss_pred ----c-------C---------eEEEEeC---CHHHHHHHHHHhCCCE
Confidence 1 1 2899999 9999999999999988
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=97.17 E-value=0.008 Score=60.45 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=79.6
Q ss_pred ceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCC
Q psy6597 82 EFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNL 161 (305)
Q Consensus 82 efiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gL 161 (305)
-||.|+- .......++.|||+.|....-...+.|.-+..+. .....-..-+.. ...+......--+|++.||
T Consensus 222 afV~F~~----~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~--er~~~~~~~~~~--~~~~~~~~~~~~~l~V~nl 293 (562)
T TIGR01628 222 AFVNFEK----HEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA--EREAELRRKFEE--LQQERKMKAQGVNLYVKNL 293 (562)
T ss_pred EEEEECC----HHHHHHHHHHhCCcEecccccceeeEeecccChh--hhHHHHHhhHHh--hhhhhhcccCCCEEEEeCC
Confidence 4888853 3446788889999999866434445444322221 110000111111 0111111223347999999
Q ss_pred cccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHH
Q psy6597 162 PVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQ 241 (305)
Q Consensus 162 P~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kA 241 (305)
|-.+ +++-|+.+|+.||.|..+.|..++ .+..+ --+||.|. ...+-.+|
T Consensus 294 ~~~~----------~~~~L~~~F~~~G~i~~~~i~~d~---------~g~~~---------g~gfV~f~---~~~~A~~A 342 (562)
T TIGR01628 294 DDTV----------TDEKLRELFSECGEITSAKVMLDE---------KGVSR---------GFGFVCFS---NPEEANRA 342 (562)
T ss_pred CCcc----------CHHHHHHHHHhcCCeEEEEEEECC---------CCCcC---------CeEEEEeC---CHHHHHHH
Confidence 8544 477899999999999999985431 11111 23599999 99999999
Q ss_pred HHHHhCCC
Q psy6597 242 VDIISGMD 249 (305)
Q Consensus 242 M~aLrGmk 249 (305)
++.|.|..
T Consensus 343 ~~~~~g~~ 350 (562)
T TIGR01628 343 VTEMHGRM 350 (562)
T ss_pred HHHhcCCe
Confidence 99999966
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.13 E-value=0.003 Score=61.30 Aligned_cols=81 Identities=21% Similarity=0.346 Sum_probs=62.0
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
+.||+|.|||..+ +|..|+.+|+.||.|..|.|+.. +. ++ .-.--|||+|.
T Consensus 186 ~~~l~v~nl~~~~----------te~~l~~~f~~~G~i~~v~~~~d-~~--------~g--------~~~g~afV~f~-- 236 (457)
T TIGR01622 186 FLKLYVGNLHFNI----------TEQELRQIFEPFGDIEDVQLHRD-PE--------TG--------RSKGFGFIQFH-- 236 (457)
T ss_pred CCEEEEcCCCCCC----------CHHHHHHHHHhcCCeEEEEEEEc-CC--------CC--------ccceEEEEEEC--
Confidence 5899999999443 68889999999999999998531 11 11 11235899999
Q ss_pred CChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEEec
Q psy6597 233 TDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVVMC 278 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~~ 278 (305)
...+-.+|++.|.|+. | +| ..|.|.|..+.
T Consensus 237 -~~e~A~~A~~~l~g~~----i-----~g------~~i~v~~a~~~ 266 (457)
T TIGR01622 237 -DAEEAKEALEVMNGFE----L-----AG------RPIKVGYAQDS 266 (457)
T ss_pred -CHHHHHHHHHhcCCcE----E-----CC------EEEEEEEccCC
Confidence 9999999999999977 5 24 37888886544
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=97.12 E-value=0.0047 Score=64.74 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=84.2
Q ss_pred eEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCCCC-CCchhHhhhhcccCCCCCCCCCCCeEEeCCC
Q psy6597 83 FVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPT-RHDWDSYFRDAKNMNEMKPGERPDTIYLSNL 161 (305)
Q Consensus 83 fiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dFPt-rhdWdsfFrdak~m~E~kpgeRPDTI~l~gL 161 (305)
||.|+ +....+..++.|||+.|. |- .|+|.-. .+.|. +...+.. . ......-+||+.||
T Consensus 153 FVeF~----s~e~A~~Ai~~lnG~~i~--GR--~IkV~rp---~~~p~a~~~~~~~-~--------~~~~~~~rLfVgnL 212 (612)
T TIGR01645 153 FVEYE----VPEAAQLALEQMNGQMLG--GR--NIKVGRP---SNMPQAQPIIDMV-Q--------EEAKKFNRIYVASV 212 (612)
T ss_pred EEEeC----cHHHHHHHHHhcCCeEEe--cc--eeeeccc---ccccccccccccc-c--------ccccccceEEeecC
Confidence 78884 445577888889997654 44 2344321 22221 1100100 0 11223458999999
Q ss_pred cccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHH
Q psy6597 162 PVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQ 241 (305)
Q Consensus 162 P~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kA 241 (305)
|-.| +++.|+.+|+.||+|..+.|+-... ++..++ -+||+|+ .+.+-.+|
T Consensus 213 p~~v----------teedLk~lFs~FG~I~svrl~~D~~--------tgksKG---------fGFVeFe---~~e~A~kA 262 (612)
T TIGR01645 213 HPDL----------SETDIKSVFEAFGEIVKCQLARAPT--------GRGHKG---------YGFIEYN---NLQSQSEA 262 (612)
T ss_pred CCCC----------CHHHHHHHHhhcCCeeEEEEEecCC--------CCCcCC---------eEEEEEC---CHHHHHHH
Confidence 9665 7888999999999999999954211 111121 3689999 99999999
Q ss_pred HHHHhCCCccceeeeecccCCCCCCcceEEEEEEEe
Q psy6597 242 VDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVVM 277 (305)
Q Consensus 242 M~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~ 277 (305)
+++|.|.. |. | +.+.|++.+.
T Consensus 263 I~amNg~e----lg-----G------r~LrV~kAi~ 283 (612)
T TIGR01645 263 IASMNLFD----LG-----G------QYLRVGKCVT 283 (612)
T ss_pred HHHhCCCe----eC-----C------eEEEEEecCC
Confidence 99999988 52 5 3788887775
No 14
>KOG0127|consensus
Probab=97.06 E-value=0.0014 Score=68.03 Aligned_cols=157 Identities=20% Similarity=0.333 Sum_probs=92.2
Q ss_pred hcCCCCcceeeeecCCcc-----eEEeeccccccccHHHHH--hhcCCceEEecCCCcceEEE-eeccC---CCCCCCCc
Q psy6597 65 WAQPEEFSSLKVTKSTLE-----FVRLDGEIENRSKLLPVL--ARLDGRTIKLSGFADGLRVR-ATEAK---PDFPTRHD 133 (305)
Q Consensus 65 ~i~P~~fs~lkV~ksTle-----fiRFEgE~e~r~~~~~v~--~kLdG~~lkLsGf~~~LkVr-a~Eak---~dFPtrhd 133 (305)
-+-|..--.+--.+++.+ ||.|--+ |.-.+.-..+ .+++|..|++.=.+...+-. +.+.. ..-|.++.
T Consensus 28 ~vGPik~~~vVt~~gs~~~RGfgfVtFam~-ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~ 106 (678)
T KOG0127|consen 28 YVGPIKHAVVVTNKGSSEKRGFGFVTFAME-EDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQK 106 (678)
T ss_pred cccCcceeEEecCCCcccccCccceeeehH-hHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccC
Confidence 344655433333344433 7888533 3322222222 34888988887666555443 11100 11111110
Q ss_pred hhHhhhhcccCCCCC-CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCC
Q psy6597 134 WDSYFRDAKNMNEMK-PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGM 212 (305)
Q Consensus 134 WdsfFrdak~m~E~k-pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~ 212 (305)
+ -.+.+ .+++| -++|+|||.+- .+| -|+.||+.||+|+.|.||- +. ++.+
T Consensus 107 --------~-~~k~~v~~~k~-rLIIRNLPf~~-------k~~---dLk~vFs~~G~V~Ei~IP~-----k~----dgkl 157 (678)
T KOG0127|consen 107 --------R-PTKAKVDLPKW-RLIIRNLPFKC-------KKP---DLKNVFSNFGKVVEIVIPR-----KK----DGKL 157 (678)
T ss_pred --------C-cchhhccCccc-eEEeecCCccc-------CcH---HHHHHHhhcceEEEEEccc-----CC----CCCc
Confidence 0 00000 12233 36789999532 333 5999999999999999983 22 4455
Q ss_pred ccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEEec
Q psy6597 213 TLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVVMC 278 (305)
Q Consensus 213 ~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~~ 278 (305)
++| |||||. +-.+--+||+.+.|.+ + +| +.+.||+.|+=
T Consensus 158 cGF---------aFV~fk---~~~dA~~Al~~~N~~~----i-----~g------R~VAVDWAV~K 196 (678)
T KOG0127|consen 158 CGF---------AFVQFK---EKKDAEKALEFFNGNK----I-----DG------RPVAVDWAVDK 196 (678)
T ss_pred cce---------EEEEEe---eHHHHHHHHHhccCce----e-----cC------ceeEEeeeccc
Confidence 544 689999 9999999999999988 4 46 47888888875
No 15
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=96.98 E-value=0.0025 Score=45.02 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=37.3
Q ss_pred HHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 180 LRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 180 l~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
|+..|++||+|.++.+.... .-.|||||. .-.+-.+|++.|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----------------------~~~a~V~f~---~~~~A~~a~~~l~~~~ 45 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----------------------RGFAFVEFA---SVEDAQKAIEQLNGRQ 45 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----------------------TTEEEEEES---SHHHHHHHHHHHTTSE
T ss_pred ChHHhCCcccEEEEEEEeCC----------------------CCEEEEEEC---CHHHHHHHHHHhCCCE
Confidence 67899999999999883211 235999999 9999999999999999
No 16
>smart00362 RRM_2 RNA recognition motif.
Probab=96.93 E-value=0.0043 Score=42.56 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=49.7
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
||+++|||..+ ++.-++.+|+.||+|.++.+... + . . ..=.+||+|. .
T Consensus 1 ~v~i~~l~~~~----------~~~~l~~~~~~~g~v~~~~~~~~-~-----~---~----------~~~~~~v~f~---~ 48 (72)
T smart00362 1 TLFVGNLPPDV----------TEEDLKELFSKFGPIESVKIPKD-T-----G---K----------SKGFAFVEFE---S 48 (72)
T ss_pred CEEEcCCCCcC----------CHHHHHHHHHhcCCEEEEEEecC-C-----C---C----------CCceEEEEeC---C
Confidence 68999998876 46678999999999999888532 1 0 0 1124899999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
..+..+|++.+.|..
T Consensus 49 ~~~a~~a~~~~~~~~ 63 (72)
T smart00362 49 EEDAEKAIEALNGTK 63 (72)
T ss_pred HHHHHHHHHHhCCcE
Confidence 999999999999876
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=96.76 E-value=0.0067 Score=56.51 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=54.0
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
...||++.+||.+| +|.-|+.+|+.||+|..|.|..+ +.. +... -=|||+|.
T Consensus 2 ~~~~l~V~nLp~~~----------~e~~l~~~F~~~G~i~~v~i~~d-~~~-------g~s~---------g~afV~f~- 53 (352)
T TIGR01661 2 SKTNLIVNYLPQTM----------TQEEIRSLFTSIGEIESCKLVRD-KVT-------GQSL---------GYGFVNYV- 53 (352)
T ss_pred CCcEEEEeCCCCCC----------CHHHHHHHHHccCCEEEEEEEEc-CCC-------Cccc---------eEEEEEEC-
Confidence 46799999999877 78889999999999999999331 111 1111 24799999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
.-.+-.+|++.|.|..
T Consensus 54 --~~~~A~~Ai~~l~g~~ 69 (352)
T TIGR01661 54 --RPEDAEKAVNSLNGLR 69 (352)
T ss_pred --cHHHHHHHHhhcccEE
Confidence 9999999999999877
No 18
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=96.73 E-value=0.012 Score=50.43 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=55.5
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
.....-+|++.+||-. -+|..|+.+|++||+|..+.|+.+. . + +. ---=|||+
T Consensus 30 ~~~~~~~lfVgnL~~~----------~te~~L~~~F~~~G~I~~v~i~~d~-~----t--g~----------~kGfaFV~ 82 (144)
T PLN03134 30 LRLMSTKLFIGGLSWG----------TDDASLRDAFAHFGDVVDAKVIVDR-E----T--GR----------SRGFGFVN 82 (144)
T ss_pred ccCCCCEEEEeCCCCC----------CCHHHHHHHHhcCCCeEEEEEEecC-C----C--CC----------cceEEEEE
Confidence 4677889999999943 3688899999999999999996521 0 0 11 11247899
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. +..+-.+|++.|.|..
T Consensus 83 F~---~~e~A~~Al~~lng~~ 100 (144)
T PLN03134 83 FN---DEGAATAAISEMDGKE 100 (144)
T ss_pred EC---CHHHHHHHHHHcCCCE
Confidence 99 9999999999998877
No 19
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.68 E-value=0.009 Score=41.12 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=51.3
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
+|+++|||.. .++..+..+|+.||.|.++.++..... .-.--+||+|. .
T Consensus 1 ~i~i~~l~~~----------~~~~~i~~~~~~~g~i~~~~~~~~~~~------------------~~~~~~~v~f~---s 49 (74)
T cd00590 1 TLFVGNLPPD----------VTEEDLRELFSKFGKVESVRIVRDKDT------------------KSKGFAFVEFE---D 49 (74)
T ss_pred CEEEeCCCCc----------cCHHHHHHHHHhcCCEEEEEEeeCCCC------------------CcceEEEEEEC---C
Confidence 5889999976 467889999999999999888532111 11225799999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
+.+..+|++.+.|..
T Consensus 50 ~~~a~~a~~~~~~~~ 64 (74)
T cd00590 50 EEDAEKALEALNGKE 64 (74)
T ss_pred HHHHHHHHHHhCCCe
Confidence 999999999999987
No 20
>smart00360 RRM RNA recognition motif.
Probab=96.61 E-value=0.0068 Score=41.27 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=43.2
Q ss_pred CcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 175 PSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 175 PSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
-+++-++++|+.||.|.++.|+.... . +. -.--|||+|. ...+-.+||+.|.|..
T Consensus 8 ~~~~~l~~~f~~~g~v~~~~i~~~~~-----~--~~----------~~~~a~v~f~---~~~~a~~a~~~~~~~~ 62 (71)
T smart00360 8 VTEEELRELFSKFGKIESVRLVRDKD-----T--GK----------SKGFAFVEFE---SEEDAEKALEALNGKE 62 (71)
T ss_pred cCHHHHHHHHHhhCCEeEEEEEeCCC-----C--CC----------CCceEEEEeC---CHHHHHHHHHHcCCCe
Confidence 37788999999999999999864221 0 11 1235899999 9999999999999877
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=96.39 E-value=0.1 Score=50.80 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=47.3
Q ss_pred HHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCCccceeeee
Q psy6597 178 AMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMDYTTIIMLK 257 (305)
Q Consensus 178 ~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk~~~~L~~K 257 (305)
+-++.-|++||.|-.|.|+.. . . .-.+||+|. ...+-.+|+++|.|+. +
T Consensus 387 ~dv~~e~~k~G~v~~v~v~~~-------~--~------------~G~~fV~F~---~~e~A~~A~~~lnGr~----f--- 435 (457)
T TIGR01622 387 DDVKEECSKYGGVVHIYVDTK-------N--S------------AGKIYLKFS---SVDAALAAFQALNGRY----F--- 435 (457)
T ss_pred HHHHHHHHhcCCeeEEEEeCC-------C--C------------ceeEEEEEC---CHHHHHHHHHHhcCcc----c---
Confidence 347788999999999988421 0 0 124899999 9999999999999999 4
Q ss_pred cccCCCCCCcceEEEEEEEe
Q psy6597 258 ASRKTSGGASKSMCVTYVVM 277 (305)
Q Consensus 258 ~~dg~~~~~~~~~~~~~~v~ 277 (305)
+| +.+.|.|...
T Consensus 436 --~g------r~i~~~~~~~ 447 (457)
T TIGR01622 436 --GG------KMITAAFVVN 447 (457)
T ss_pred --CC------eEEEEEEEcH
Confidence 46 4788887654
No 22
>PLN03213 repressor of silencing 3; Provisional
Probab=96.27 E-value=0.016 Score=60.11 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeE
Q psy6597 144 MNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIF 223 (305)
Q Consensus 144 m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~F 223 (305)
|.|...|.+--.||+-||+. --.++-|+.+|+.||.|++|.|| |+. |.| |
T Consensus 1 meeees~~~gMRIYVGNLSy----------dVTEDDLravFSeFGsVkdVEIp-----RET----GRG---F-------- 50 (759)
T PLN03213 1 MEEKSSGGGGVRLHVGGLGE----------SVGRDDLLKIFSPMGTVDAVEFV-----RTK----GRS---F-------- 50 (759)
T ss_pred CcccccCCcceEEEEeCCCC----------CCCHHHHHHHHHhcCCeeEEEEe-----ccc----CCc---e--------
Confidence 34555677778999999974 34678899999999999999998 552 422 2
Q ss_pred EEEEeecCCCCh--hHHHHHHHHHhCCC
Q psy6597 224 KTQLGKLPGTDH--VTMFIQVDIISGMD 249 (305)
Q Consensus 224 eayVQy~~~~ey--~~F~kAM~aLrGmk 249 (305)
|||-|. .- ...-+|+.+|.|.+
T Consensus 51 -AFVEMs---sdddaEeeKAISaLNGAE 74 (759)
T PLN03213 51 -AYIDFS---PSSTNSLTKLFSTYNGCV 74 (759)
T ss_pred -EEEEec---CCcHHHHHHHHHHhcCCe
Confidence 688888 54 67999999999999
No 23
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.89 E-value=0.03 Score=53.43 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=58.4
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||.+ -+|.-|+..|+.||+|.+|+|+.+.. . . -=+||.|+
T Consensus 5 rtVfVgNLs~~----------tTE~dLrefFS~~G~I~~V~I~~d~~-----~------~---------GfAFVtF~--- 51 (260)
T PLN03120 5 RTVKVSNVSLK----------ATERDIKEFFSFSGDIEYVEMQSENE-----R------S---------QIAYVTFK--- 51 (260)
T ss_pred CEEEEeCCCCC----------CCHHHHHHHHHhcCCeEEEEEeecCC-----C------C---------CEEEEEeC---
Confidence 38999999865 47888999999999999999975321 0 1 13799999
Q ss_pred ChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEEec
Q psy6597 234 DHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVVMC 278 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~~ 278 (305)
+..+.-+||. |.|.. |. | +.++|+..-++
T Consensus 52 d~eaAe~All-LnG~~----l~-----g------r~V~Vt~a~~~ 80 (260)
T PLN03120 52 DPQGAETALL-LSGAT----IV-----D------QSVTITPAEDY 80 (260)
T ss_pred cHHHHHHHHH-hcCCe----eC-----C------ceEEEEeccCC
Confidence 9999999994 88877 52 4 36777665555
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=95.88 E-value=0.018 Score=56.10 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=51.2
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
||++.+||-.| +|+.|+.+|+.||+|..|.|+. |+ ..+ .+-| =|||+|. .
T Consensus 109 ~LfVgnLp~~~----------te~~L~~lF~~~G~V~~v~i~~-d~--------~tg---~srG-----yaFVeF~---~ 158 (346)
T TIGR01659 109 NLIVNYLPQDM----------TDRELYALFRTIGPINTCRIMR-DY--------KTG---YSFG-----YAFVDFG---S 158 (346)
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEe-cC--------CCC---ccCc-----EEEEEEc---c
Confidence 89999999655 7888999999999999999943 11 011 0111 2899999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
-.+-.+||+.|.|..
T Consensus 159 ~e~A~~Ai~~LnG~~ 173 (346)
T TIGR01659 159 EADSQRAIKNLNGIT 173 (346)
T ss_pred HHHHHHHHHHcCCCc
Confidence 999999999999887
No 25
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=95.75 E-value=0.037 Score=40.00 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=48.9
Q ss_pred EEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCCh
Q psy6597 156 IYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDH 235 (305)
Q Consensus 156 I~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey 235 (305)
|+|+|||... +++.+...|+.||.|.+|.+... + . +.-.-.|||+|. ..
T Consensus 1 v~i~nlp~~~----------~~~~l~~~f~~~g~v~~v~~~~~-------~---------~--~~~~~~a~v~f~---~~ 49 (70)
T PF14259_consen 1 VYISNLPPST----------TEEDLRNFFSRFGPVEKVRLIKN-------K---------D--GQSRGFAFVEFS---SE 49 (70)
T ss_dssp EEEESSTTT------------HHHHHHHCTTSSBEEEEEEEES-------T---------T--SSEEEEEEEEES---SH
T ss_pred CEEeCCCCCC----------CHHHHHHHHHhcCCcceEEEEee-------e---------c--cccCCEEEEEeC---CH
Confidence 6889998642 45779999999999988888421 1 1 134677999999 99
Q ss_pred hHHHHHHHHHhCCC
Q psy6597 236 VTMFIQVDIISGMD 249 (305)
Q Consensus 236 ~~F~kAM~aLrGmk 249 (305)
.+..+|++.+.|+.
T Consensus 50 ~~a~~al~~~~~~~ 63 (70)
T PF14259_consen 50 EDAKRALELLNGKE 63 (70)
T ss_dssp HHHHHHHHHHTTEE
T ss_pred HHHHHHHHHCCCcE
Confidence 99999999998776
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=95.56 E-value=0.042 Score=57.38 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=55.3
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
.++.-+|++.+||..| +|+-|+.+|++||+|..+.|+++. ++. ..+ =+||+|
T Consensus 55 p~~~~~lFVgnLp~~~----------tEd~L~~~F~~~G~I~~vrl~~D~--------sG~-sRG---------faFV~F 106 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDL----------YEDELVPLFEKAGPIYELRLMMDF--------SGQ-NRG---------YAFVTF 106 (578)
T ss_pred CCCCCEEEeCCCCCCC----------CHHHHHHHHHhhCCEEEEEEEECC--------CCC-ccc---------eEEEEe
Confidence 3455789999999887 688899999999999999986641 011 121 379999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+--+|++.|.|..
T Consensus 107 ~---~~e~A~~Ai~~lng~~ 123 (578)
T TIGR01648 107 C---GKEEAKEAVKLLNNYE 123 (578)
T ss_pred C---CHHHHHHHHHHcCCCe
Confidence 9 9999999999999876
No 27
>KOG0110|consensus
Probab=95.53 E-value=0.032 Score=59.34 Aligned_cols=90 Identities=16% Similarity=0.298 Sum_probs=63.8
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
--|++++||- ..+..-++++|.+||.|+.|.||-. .++.|. .|| +||-|.
T Consensus 614 tKIlVRNipF----------eAt~rEVr~LF~aFGqlksvRlPKK--~~k~a~---rGF------------~Fv~f~--- 663 (725)
T KOG0110|consen 614 TKILVRNIPF----------EATKREVRKLFTAFGQLKSVRLPKK--IGKGAH---RGF------------GFVDFL--- 663 (725)
T ss_pred ceeeeeccch----------HHHHHHHHHHHhcccceeeeccchh--hcchhh---ccc------------eeeecc---
Confidence 5699999995 3455669999999999999999986 445442 222 477888
Q ss_pred ChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEEec--chhhHHHHHhhhhh
Q psy6597 234 DHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVVMC--MAMEISALHALHLT 292 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~~--~~~~~~~~~~r~~~ 292 (305)
--..-.+||++|++-- | | |+ ++ +..| ..=+-.+||+|--.
T Consensus 664 t~~ea~nA~~al~STH----l-y----GR------rL----VLEwA~~d~~~e~~r~r~Aa 705 (725)
T KOG0110|consen 664 TPREAKNAFDALGSTH----L-Y----GR------RL----VLEWAKSDNTMEALRERTAA 705 (725)
T ss_pred CcHHHHHHHHhhcccc----e-e----ch------hh----heehhccchHHHHHHHHHHH
Confidence 8888999999999555 6 2 43 22 4566 33335677777543
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=95.40 E-value=0.03 Score=58.89 Aligned_cols=66 Identities=17% Similarity=0.325 Sum_probs=52.2
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
=+|++.|||-.+ +|+-|+.+|++||.|..|.|+. |+.- +. .++| +||+|+
T Consensus 108 ~rLfVGnLp~~~----------tEe~Lr~lF~~fG~I~sV~I~~-D~~T------gk-skGf---------AFVeF~--- 157 (612)
T TIGR01645 108 CRVYVGSISFEL----------REDTIRRAFDPFGPIKSINMSW-DPAT------GK-HKGF---------AFVEYE--- 157 (612)
T ss_pred CEEEEcCCCCCC----------CHHHHHHHHHccCCEEEEEEee-cCCC------CC-cCCe---------EEEEeC---
Confidence 479999998765 6888999999999999999965 3221 11 1222 899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+--+||+.|.|..
T Consensus 158 s~e~A~~Ai~~lnG~~ 173 (612)
T TIGR01645 158 VPEAAQLALEQMNGQM 173 (612)
T ss_pred cHHHHHHHHHhcCCeE
Confidence 9999999999998766
No 29
>KOG0144|consensus
Probab=95.25 E-value=0.091 Score=53.69 Aligned_cols=141 Identities=20% Similarity=0.289 Sum_probs=100.0
Q ss_pred CcCchHHHHHHHHHhcCCCCcceeeeecCCcc-----eEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccC
Q psy6597 51 KSLSNYEVIEKIKYWAQPEEFSSLKVTKSTLE-----FVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAK 125 (305)
Q Consensus 51 ksISnWEVmEkLk~~i~P~~fs~lkV~ksTle-----fiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak 125 (305)
|+-|+.|+.+-....-.=.+.-.||- |+|-+ ||.| .+|+.....+..|+.+ ..|.|-..+++|+-++..
T Consensus 44 rt~sE~dlr~lFe~yg~V~einl~kD-k~t~~s~gcCFv~~----~trk~a~~a~~Alhn~-ktlpG~~~pvqvk~Ad~E 117 (510)
T KOG0144|consen 44 RTASEKDLRELFEKYGNVYEINLIKD-KSTGQSKGCCFVKY----YTRKEADEAINALHNQ-KTLPGMHHPVQVKYADGE 117 (510)
T ss_pred ccccHHHHHHHHHHhCceeEEEeecc-cccCcccceEEEEe----ccHHHHHHHHHHhhcc-cccCCCCcceeecccchh
Confidence 57788888777666555555555665 77776 7888 5677778888889876 579999999999987653
Q ss_pred CCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCcccccc
Q psy6597 126 PDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQM 205 (305)
Q Consensus 126 ~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m 205 (305)
+. + -+.| -|-|..- .+-+-+|.-++.||++||.|.++-| +.||++..
T Consensus 118 -------------~e----r--~~~e-----------~KLFvg~-lsK~~te~evr~iFs~fG~Ied~~i-lrd~~~~s- 164 (510)
T KOG0144|consen 118 -------------RE----R--IVEE-----------RKLFVGM-LSKQCTENEVREIFSRFGHIEDCYI-LRDPDGLS- 164 (510)
T ss_pred -------------hh----c--cccc-----------hhhhhhh-ccccccHHHHHHHHHhhCccchhhh-eecccccc-
Confidence 10 0 0001 1223322 2567889999999999999999988 34444432
Q ss_pred ccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 206 KPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 206 ~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
+ | =|||+|. --.--+.||++|.|--
T Consensus 165 ----R-------G-----caFV~fs---tke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 165 ----R-------G-----CAFVKFS---TKEMAVAAIKALNGTQ 189 (510)
T ss_pred ----c-------c-----eeEEEEe---hHHHHHHHHHhhccce
Confidence 1 1 2799999 8888889999999876
No 30
>KOG4207|consensus
Probab=95.24 E-value=0.028 Score=52.94 Aligned_cols=57 Identities=33% Similarity=0.480 Sum_probs=46.0
Q ss_pred CCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 173 NQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 173 ~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
-.-+.+-|+.||++||+|-.|-||- |+|=.+-. | | |||-|- +-.+-.+||++|-|.-
T Consensus 23 yRTspd~LrrvFekYG~vgDVyIPr-dr~Tr~sR----g---F---------aFVrf~---~k~daedA~damDG~~ 79 (256)
T KOG4207|consen 23 YRTSPDDLRRVFEKYGRVGDVYIPR-DRYTRQSR----G---F---------AFVRFH---DKRDAEDALDAMDGAV 79 (256)
T ss_pred ccCCHHHHHHHHHHhCcccceeccc-cccccccc----c---e---------eEEEee---ecchHHHHHHhhccee
Confidence 3456778999999999999999986 55554422 2 2 689999 8899999999999988
No 31
>KOG0125|consensus
Probab=95.18 E-value=0.037 Score=54.80 Aligned_cols=67 Identities=19% Similarity=0.356 Sum_probs=53.3
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
--|--||++|+|.|+ -+++ |++.|++||+|-.|+| +-. .+|-++|. ||-++
T Consensus 94 ~~pkRLhVSNIPFrF-RdpD---------L~aMF~kfG~VldVEI---------IfN-ERGSKGFG---------FVTme 144 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRF-RDPD---------LRAMFEKFGKVLDVEI---------IFN-ERGSKGFG---------FVTME 144 (376)
T ss_pred CCCceeEeecCCccc-cCcc---------HHHHHHhhCceeeEEE---------Eec-cCCCCccc---------eEEec
Confidence 456779999999995 4444 9999999999999999 432 35557664 57778
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...|--+|=..|-|--
T Consensus 145 ---n~~dadRARa~LHgt~ 160 (376)
T KOG0125|consen 145 ---NPADADRARAELHGTV 160 (376)
T ss_pred ---ChhhHHHHHHHhhcce
Confidence 9999999999998865
No 32
>smart00361 RRM_1 RNA recognition motif.
Probab=94.84 E-value=0.05 Score=40.55 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=39.0
Q ss_pred HHHHHHHh----ccCcceeec-CCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 178 AMLRRVFQ----NYGDIREVD-IPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 178 ~vl~~VFe----~FG~IR~vD-IP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.-|...|+ +||+|..|. |++..+- . .+... - -+||+|+ +..+-.+|++.|.|+.
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~-~-----~~~~r--------G-~~fV~f~---~~~dA~~A~~~l~g~~ 61 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVG-Y-----ENHKR--------G-NVYITFE---RSEDAARAIVDLNGRY 61 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCC-C-----CCCCc--------E-EEEEEEC---CHHHHHHHHHHhCCCE
Confidence 45778888 999999985 6443211 0 01001 1 2899999 9999999999999998
No 33
>PLN03121 nucleic acid binding protein; Provisional
Probab=93.84 E-value=0.17 Score=47.97 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=50.4
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
=||++.||+ .+-+|.-|+..|+.||+|++|.|+.++ .. -.-+||.|+
T Consensus 6 ~TV~V~NLS----------~~tTE~dLrefFS~~G~I~~V~I~~D~---------et-----------~gfAfVtF~--- 52 (243)
T PLN03121 6 YTAEVTNLS----------PKATEKDVYDFFSHCGAIEHVEIIRSG---------EY-----------ACTAYVTFK--- 52 (243)
T ss_pred eEEEEecCC----------CCCCHHHHHHHHHhcCCeEEEEEecCC---------Cc-----------ceEEEEEEC---
Confidence 378888875 567899999999999999999997431 01 125999999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
+-.+.-.|+ .|.|..
T Consensus 53 d~~aaetAl-lLnGa~ 67 (243)
T PLN03121 53 DAYALETAV-LLSGAT 67 (243)
T ss_pred CHHHHHHHH-hcCCCe
Confidence 999998888 789988
No 34
>KOG0113|consensus
Probab=93.62 E-value=0.17 Score=49.61 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=60.3
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
|.--=|+.|.-|+ -.-||+-|+.+|++||+|++|-+- +.+.+ ++|-| =|||-|
T Consensus 98 gDPy~TLFv~RLn----------ydT~EskLrreF~~YG~IkrirlV-----~d~vT-------gkskG-----YAFIey 150 (335)
T KOG0113|consen 98 GDPYKTLFVARLN----------YDTSESKLRREFEKYGPIKRIRLV-----RDKVT-------GKSKG-----YAFIEY 150 (335)
T ss_pred CCccceeeeeecc----------ccccHHHHHHHHHhcCcceeEEEe-----eeccc-------CCccc-----eEEEEe
Confidence 4444577776665 445899999999999999999882 12222 12323 379999
Q ss_pred cCCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEE
Q psy6597 230 LPGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVV 276 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v 276 (305)
+ .-.+...|-+..-|.+ + || ..+.|+|+-
T Consensus 151 e---~erdm~~AYK~adG~~----I-----dg------rri~VDvER 179 (335)
T KOG0113|consen 151 E---HERDMKAAYKDADGIK----I-----DG------RRILVDVER 179 (335)
T ss_pred c---cHHHHHHHHHhccCce----e-----cC------cEEEEEecc
Confidence 9 9999999999999888 4 56 488898864
No 35
>KOG1190|consensus
Probab=93.37 E-value=0.078 Score=53.88 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=56.6
Q ss_pred CCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCCccc
Q psy6597 173 NQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMDYTT 252 (305)
Q Consensus 173 ~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk~~~ 252 (305)
-.-|-+|||+||++||.|-.|- .|.-.-.|.|-|||. +-..-.-|=-+|-|+.
T Consensus 160 ypVslDVLHqvFS~fG~VlKIi---------------------TF~Knn~FQALvQy~---d~~sAq~AK~aLdGqn--- 212 (492)
T KOG1190|consen 160 YPVSLDVLHQVFSKFGFVLKII---------------------TFTKNNGFQALVQYT---DAVSAQAAKLALDGQN--- 212 (492)
T ss_pred eeeEHHHHHHHHhhcceeEEEE---------------------EEecccchhhhhhcc---chhhHHHHHHhccCCc---
Confidence 4568999999999999997652 122234799999999 9999999999999999
Q ss_pred eeeeecccCCCCCCcceEEEEEEEecchhhHH
Q psy6597 253 IIMLKASRKTSGGASKSMCVTYVVMCMAMEIS 284 (305)
Q Consensus 253 ~L~~K~~dg~~~~~~~~~~~~~~v~~~~~~~~ 284 (305)
+ +. | |.+-+||++.|++-
T Consensus 213 -I-yn---g---------cCtLrId~Sklt~L 230 (492)
T KOG1190|consen 213 -I-YN---G---------CCTLRIDFSKLTDL 230 (492)
T ss_pred -c-cC---c---------eeEEEeehhhcccc
Confidence 6 43 5 78888998766553
No 36
>KOG0117|consensus
Probab=91.56 E-value=0.49 Score=48.69 Aligned_cols=168 Identities=19% Similarity=0.242 Sum_probs=97.2
Q ss_pred CCcceecccccceeeecee--EEEEEEecCCCc--cCCCcCchHHHHHHHHHhcCCCCcceeeeecCCcc--------eE
Q psy6597 17 TSDAKILSAAYQLFLKPVA--RLNISVQIPELK--ITGKSLSNYEVIEKIKYWAQPEEFSSLKVTKSTLE--------FV 84 (305)
Q Consensus 17 ~sda~~L~~~~~LyLKPia--klnIsV~LP~lk--~pgksISnWEVmEkLk~~i~P~~fs~lkV~ksTle--------fi 84 (305)
.-+|+.++..+- .+|=- ++++||.=-.|= .--|+-..=||+|.++...-.-+ -+-|-++--+ ||
T Consensus 138 Aq~Aik~lnn~E--ir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVv--dVivy~~p~dk~KNRGFaFv 213 (506)
T KOG0117|consen 138 AQEAIKELNNYE--IRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVV--DVIVYPSPDDKTKNRGFAFV 213 (506)
T ss_pred HHHHHHHhhCcc--ccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCee--EEEEecCccccccccceEEE
Confidence 345555555543 33433 344444322221 11244455577777776543211 2222222222 56
Q ss_pred EeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCccc
Q psy6597 85 RLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVK 164 (305)
Q Consensus 85 RFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~r 164 (305)
-||-+ ......-.||=--.|||-|= ...|.-+|... +-||. ...+--.+|++|||-
T Consensus 214 eYe~H----~~Aa~aRrKl~~g~~klwgn--~~tVdWAep~~----------------e~ded-~ms~VKvLYVRNL~~- 269 (506)
T KOG0117|consen 214 EYESH----RAAAMARRKLMPGKIKLWGN--AITVDWAEPEE----------------EPDED-TMSKVKVLYVRNLME- 269 (506)
T ss_pred Eeecc----hhHHHHHhhccCCceeecCC--cceeeccCccc----------------CCChh-hhhheeeeeeeccch-
Confidence 66533 23334455666667888775 22332222211 11111 233444789999984
Q ss_pred ccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHH
Q psy6597 165 WFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDI 244 (305)
Q Consensus 165 WFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~a 244 (305)
--+|+.|+..|+.||+|-+|-.| . + =|||-|. +-++-++||+.
T Consensus 270 ---------~tTeE~lk~~F~~~G~veRVkk~---------r---------D-------YaFVHf~---eR~davkAm~~ 312 (506)
T KOG0117|consen 270 ---------STTEETLKKLFNEFGKVERVKKP---------R---------D-------YAFVHFA---EREDAVKAMKE 312 (506)
T ss_pred ---------hhhHHHHHHHHHhccceEEeecc---------c---------c-------eeEEeec---chHHHHHHHHH
Confidence 35899999999999999999886 1 1 2789999 99999999999
Q ss_pred HhCCC
Q psy6597 245 ISGMD 249 (305)
Q Consensus 245 LrGmk 249 (305)
+.|..
T Consensus 313 ~ngke 317 (506)
T KOG0117|consen 313 TNGKE 317 (506)
T ss_pred hcCce
Confidence 99987
No 37
>KOG0107|consensus
Probab=91.48 E-value=0.36 Score=44.42 Aligned_cols=60 Identities=25% Similarity=0.343 Sum_probs=47.6
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
-||+-+||.+ ..+.-|..+|.+||+|++|=|.- +.-+| |||.|+ +
T Consensus 12 kVYVGnL~~~----------a~k~eLE~~F~~yG~lrsvWvAr-------------nPPGf---------AFVEFe---d 56 (195)
T KOG0107|consen 12 KVYVGNLGSR----------ATKRELERAFSKYGPLRSVWVAR-------------NPPGF---------AFVEFE---D 56 (195)
T ss_pred eEEeccCCCC----------cchHHHHHHHHhcCcceeEEEee-------------cCCCc---------eEEecc---C
Confidence 3788888753 45566899999999999998822 11222 789999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
-.+--.|..+|-|..
T Consensus 57 ~RDA~DAvr~LDG~~ 71 (195)
T KOG0107|consen 57 PRDAEDAVRYLDGKD 71 (195)
T ss_pred cccHHHHHhhcCCcc
Confidence 999999999999998
No 38
>KOG0111|consensus
Probab=91.04 E-value=0.32 Score=46.46 Aligned_cols=73 Identities=19% Similarity=0.390 Sum_probs=54.0
Q ss_pred CCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEE
Q psy6597 147 MKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQ 226 (305)
Q Consensus 147 ~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Feay 226 (305)
..+..+--|+|+-||- +--.|.|||..|=.||.|..|-||++ |-.+- .-+| +|
T Consensus 4 ~~~a~~KrtlYVGGla----------deVtekvLhaAFIPFGDI~dIqiPlD--yesqk--------HRgF-------gF 56 (298)
T KOG0111|consen 4 QQMANQKRTLYVGGLA----------DEVTEKVLHAAFIPFGDIKDIQIPLD--YESQK--------HRGF-------GF 56 (298)
T ss_pred ccccccceeEEeccch----------HHHHHHHHHhccccccchhhcccccc--hhccc--------ccce-------eE
Confidence 3445566799998873 56789999999999999999999984 32221 1123 48
Q ss_pred EeecCCCChhHHHHHHHHHhCCC
Q psy6597 227 LGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 227 VQy~~~~ey~~F~kAM~aLrGmk 249 (305)
|-|+ +-.+-..|||-+.+--
T Consensus 57 Vefe---~aEDAaaAiDNMnesE 76 (298)
T KOG0111|consen 57 VEFE---EAEDAAAAIDNMNESE 76 (298)
T ss_pred EEee---ccchhHHHhhcCchhh
Confidence 9999 9999999998654444
No 39
>KOG0148|consensus
Probab=90.74 E-value=2.9 Score=41.03 Aligned_cols=137 Identities=19% Similarity=0.308 Sum_probs=91.9
Q ss_pred HHHHHHhcCC-CCcceeeeecCCc-------ceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeecc--CCCC
Q psy6597 59 IEKIKYWAQP-EEFSSLKVTKSTL-------EFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEA--KPDF 128 (305)
Q Consensus 59 mEkLk~~i~P-~~fs~lkV~ksTl-------efiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Ea--k~dF 128 (305)
-|+||++..| -+-|-.||-+..- .||.| .+|......++.++|+=|== = .||..=| |++=
T Consensus 76 ~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf----~~k~dAEnAI~~MnGqWlG~--R----~IRTNWATRKp~e 145 (321)
T KOG0148|consen 76 NEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSF----PNKEDAENAIQQMNGQWLGR--R----TIRTNWATRKPSE 145 (321)
T ss_pred hHHHHHHhccccccccceEeecccCCcccceeEEec----cchHHHHHHHHHhCCeeecc--c----eeeccccccCccc
Confidence 4888888887 4455566655432 38888 56677788999999986521 1 3443211 2100
Q ss_pred C--CCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccc
Q psy6597 129 P--TRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMK 206 (305)
Q Consensus 129 P--trhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~ 206 (305)
- -.+..|+.|..+. --=-|||.-|++. .-+|.++|+.|+.||.|-.|-| -+
T Consensus 146 ~n~~~ltfdeV~NQss--------p~NtsVY~G~I~~----------~lte~~mr~~Fs~fG~I~EVRv---------Fk 198 (321)
T KOG0148|consen 146 MNGKPLTFDEVYNQSS--------PDNTSVYVGNIAS----------GLTEDLMRQTFSPFGPIQEVRV---------FK 198 (321)
T ss_pred cCCCCccHHHHhccCC--------CCCceEEeCCcCc----------cccHHHHHHhcccCCcceEEEE---------ec
Confidence 0 1244555555432 1123899998875 4689999999999999999888 33
Q ss_pred cCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 207 PYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 207 ~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
+ ++| +||-|+ ..++-.+|+-...|..
T Consensus 199 ~-----qGY---------aFVrF~---tkEaAahAIv~mNnte 224 (321)
T KOG0148|consen 199 D-----QGY---------AFVRFE---TKEAAAHAIVQMNNTE 224 (321)
T ss_pred c-----cce---------EEEEec---chhhHHHHHHHhcCce
Confidence 2 222 689999 9999999999888876
No 40
>KOG0130|consensus
Probab=89.80 E-value=0.31 Score=43.59 Aligned_cols=75 Identities=13% Similarity=0.242 Sum_probs=55.0
Q ss_pred CCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCCc
Q psy6597 171 RPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMDY 250 (305)
Q Consensus 171 ~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk~ 250 (305)
+.+-..|+-++..|.-||+|.|+.+-. | .. .+|.-| =|-|.|+ -|..-..||+++.|..
T Consensus 80 vHeEatEedi~d~F~dyGeiKNihLNL-D----------RR-tGy~KG-----YaLvEYe---t~keAq~A~~~~Ng~~- 138 (170)
T KOG0130|consen 80 VHEEATEEDIHDKFADYGEIKNIHLNL-D----------RR-TGYVKG-----YALVEYE---TLKEAQAAIDALNGAE- 138 (170)
T ss_pred cCcchhHHHHHHHHhhcccccceeecc-c----------cc-cccccc-----eeeeehH---hHHHHHHHHHhccchh-
Confidence 457788999999999999999998732 1 11 222222 2568999 9999999999999999
Q ss_pred cceeeeecccCCCCCCcceEEEEEEEecchhhHH
Q psy6597 251 TTIIMLKASRKTSGGASKSMCVTYVVMCMAMEIS 284 (305)
Q Consensus 251 ~~~L~~K~~dg~~~~~~~~~~~~~~v~~~~~~~~ 284 (305)
|| |. |..|||-|++--
T Consensus 139 ---ll-----~q----------~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 139 ---LL-----GQ----------NVSVDWCFVKGP 154 (170)
T ss_pred ---hh-----CC----------ceeEEEEEecCC
Confidence 86 21 456888655543
No 41
>KOG0114|consensus
Probab=89.20 E-value=1.4 Score=38.01 Aligned_cols=70 Identities=27% Similarity=0.352 Sum_probs=52.5
Q ss_pred CCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEE
Q psy6597 147 MKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQ 226 (305)
Q Consensus 147 ~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Feay 226 (305)
.-|.|---.+++++||-+- -||+ .-.+|.+||.||.|-|- ..-. . -=-||
T Consensus 12 rlppevnriLyirNLp~~I---------Tsee-mydlFGkyg~IrQIRiG-------------~~k~--T-----rGTAF 61 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKI---------TSEE-MYDLFGKYGTIRQIRIG-------------NTKE--T-----RGTAF 61 (124)
T ss_pred CCChhhheeEEEecCCccc---------cHHH-HHHHhhcccceEEEEec-------------CccC--c-----CceEE
Confidence 3455666789999999754 2333 56899999999999982 2111 1 11489
Q ss_pred EeecCCCChhHHHHHHHHHhCCC
Q psy6597 227 LGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 227 VQy~~~~ey~~F~kAM~aLrGmk 249 (305)
|=|+ +--|--+||+-|.|--
T Consensus 62 VVYe---di~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 62 VVYE---DIFDAKKACDHLSGYN 81 (124)
T ss_pred EEeh---HhhhHHHHHHHhcccc
Confidence 9999 9999999999999977
No 42
>KOG0145|consensus
Probab=89.11 E-value=3 Score=40.87 Aligned_cols=56 Identities=13% Similarity=0.303 Sum_probs=42.1
Q ss_pred CCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEE--EEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 172 PNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFK--TQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 172 ~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Fe--ayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
+.-.-|.+|.+.|..||.|-||.| +.+--. -.|+ +||--- .|+.-+.||.+|.|-.
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKv---------irD~tt----------nkCKGfgFVtMt---NYdEAamAi~sLNGy~ 344 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKV---------IRDFTT----------NKCKGFGFVTMT---NYDEAAMAIASLNGYR 344 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEE---------EecCCc----------ccccceeEEEec---chHHHHHHHHHhcCcc
Confidence 344569999999999999999998 321111 1233 245556 9999999999999988
No 43
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=88.92 E-value=1.7 Score=36.31 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=53.0
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
.-||++.||| ..-++.-|...|+.||.|..+.|+..- .. +. ..=-|||.|.
T Consensus 115 ~~~l~v~nL~----------~~~~~~~l~~~F~~~g~~~~~~~~~d~-----~~--~~----------~~g~~~v~f~-- 165 (306)
T COG0724 115 NNTLFVGNLP----------YDVTEEDLRELFKKFGPVKRVRLVRDR-----ET--GK----------SRGFAFVEFE-- 165 (306)
T ss_pred CceEEEeCCC----------CCCCHHHHHHHHHhcCceeEEEeeecc-----cc--Cc----------cCceEEEEec--
Confidence 5899999999 345788899999999999998886633 00 11 1224799999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.+.|-.
T Consensus 166 -~~~~~~~a~~~~~~~~ 181 (306)
T COG0724 166 -SEESAEKAIEELNGKE 181 (306)
T ss_pred -CHHHHHHHHHHcCCCe
Confidence 9999999999999777
No 44
>KOG0120|consensus
Probab=88.81 E-value=0.7 Score=47.92 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=42.0
Q ss_pred HHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 180 LRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 180 l~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
+++=+.+||.|+.|.||-.++-.... ++ .=++||+|. .-.+--+||.+|-|+|
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~---------~G-----~GkVFVefa---s~ed~qrA~~~L~GrK 478 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPV---------PG-----TGKVFVEFA---DTEDSQRAMEELTGRK 478 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcC---------CC-----cccEEEEec---ChHHHHHHHHHccCce
Confidence 45558899999999999876333321 12 227999999 9999999999999999
No 45
>KOG0147|consensus
Probab=88.52 E-value=1.1 Score=47.01 Aligned_cols=64 Identities=20% Similarity=0.388 Sum_probs=49.1
Q ss_pred EEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCCh
Q psy6597 156 IYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDH 235 (305)
Q Consensus 156 I~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey 235 (305)
+|+.+| --.++|+.++.|||.||+|-+|+.++++.-+ ..++|. ||||. .-
T Consensus 281 l~vgnL----------HfNite~~lr~ifepfg~Ie~v~l~~d~~tG--------~skgfG---------fi~f~---~~ 330 (549)
T KOG0147|consen 281 LYVGNL----------HFNITEDMLRGIFEPFGKIENVQLTKDSETG--------RSKGFG---------FITFV---NK 330 (549)
T ss_pred hhhccc----------ccCchHHHHhhhccCcccceeeeeccccccc--------cccCcc---------eEEEe---cH
Confidence 666666 3678999999999999999999997743222 123332 67788 88
Q ss_pred hHHHHHHHHHhCCC
Q psy6597 236 VTMFIQVDIISGMD 249 (305)
Q Consensus 236 ~~F~kAM~aLrGmk 249 (305)
.+--+|...|.|--
T Consensus 331 ~~ar~a~e~lngfe 344 (549)
T KOG0147|consen 331 EDARKALEQLNGFE 344 (549)
T ss_pred HHHHHHHHHhccce
Confidence 89999999999965
No 46
>KOG0123|consensus
Probab=82.45 E-value=5.1 Score=39.83 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=96.1
Q ss_pred ccCCCcCchHHHHHHHHHhcCCCCcceeeeecCCcc----eEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEee
Q psy6597 47 KITGKSLSNYEVIEKIKYWAQPEEFSSLKVTKSTLE----FVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRAT 122 (305)
Q Consensus 47 k~pgksISnWEVmEkLk~~i~P~~fs~lkV~ksTle----fiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~ 122 (305)
+....+|.|=++-+-...+= +-.|+||...--. ||-|+-|-+ .+..++.|||..+....+ -+.
T Consensus 82 ~nl~~~~~~~~~~d~f~~~g---~ilS~kv~~~~~g~kg~FV~f~~e~~----a~~ai~~~ng~ll~~kki------~vg 148 (369)
T KOG0123|consen 82 KNLDESIDNKSLYDTFSEFG---NILSCKVATDENGSKGYFVQFESEES----AKKAIEKLNGMLLNGKKI------YVG 148 (369)
T ss_pred cCCCcccCcHHHHHHHHhhc---CeeEEEEEEcCCCceeeEEEeCCHHH----HHHHHHHhcCcccCCCee------EEe
Confidence 34456777766666555443 2557777543322 888876544 557888999988766654 332
Q ss_pred ccCCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccc
Q psy6597 123 EAKPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYR 202 (305)
Q Consensus 123 Eak~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr 202 (305)
.... ..| |.+ .... ..+|-..+++.+++ ..-++.-+...|+.+|+|-.+.|+.
T Consensus 149 ~~~~-----~~e----r~~--~~~~-~~~~~t~v~vk~~~----------~~~~~~~l~~~f~~~g~i~s~~v~~----- 201 (369)
T KOG0123|consen 149 LFER-----KEE----REA--PLGE-YKKRFTNVYVKNLE----------EDSTDEELKDLFSAYGSITSVAVMR----- 201 (369)
T ss_pred eccc-----hhh----hcc--cccc-hhhhhhhhheeccc----------cccchHHHHHhhcccCcceEEEEee-----
Confidence 2211 111 111 1122 56777777888877 4456777999999999999999943
Q ss_pred cccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCCc
Q psy6597 203 AQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMDY 250 (305)
Q Consensus 203 ~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk~ 250 (305)
+..+.. -.-+||||+ .+.+-.+|++.|.|..+
T Consensus 202 ----~~~g~~---------~~~gfv~f~---~~e~a~~av~~l~~~~~ 233 (369)
T KOG0123|consen 202 ----DSIGKS---------KGFGFVNFE---NPEDAKKAVETLNGKIF 233 (369)
T ss_pred ----cCCCCC---------CCccceeec---ChhHHHHHHHhccCCcC
Confidence 211211 223689999 99999999999999994
No 47
>KOG0146|consensus
Probab=82.13 E-value=4.4 Score=39.94 Aligned_cols=72 Identities=26% Similarity=0.389 Sum_probs=54.2
Q ss_pred CCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCCcc
Q psy6597 172 PNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMDYT 251 (305)
Q Consensus 172 ~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk~~ 251 (305)
+..-||+-+++.|+.||.|-.+-+ .|..+ +.-+ | =|||-|. .+.+-.-|+++|-|-.
T Consensus 28 ~kqq~e~dvrrlf~pfG~~~e~tv-----lrg~d----g~sK----G-----CAFVKf~---s~~eAqaAI~aLHgSq-- 84 (371)
T KOG0146|consen 28 NKQQSEDDVRRLFQPFGNIEECTV-----LRGPD----GNSK----G-----CAFVKFS---SHAEAQAAINALHGSQ-- 84 (371)
T ss_pred cccccHHHHHHHhcccCCcceeEE-----ecCCC----CCCC----C-----ceEEEec---cchHHHHHHHHhcccc--
Confidence 456799999999999999988777 33332 1112 2 2799999 8888999999998876
Q ss_pred ceeeeecccCCCCCCcceEEEEEEE
Q psy6597 252 TIIMLKASRKTSGGASKSMCVTYVV 276 (305)
Q Consensus 252 ~~L~~K~~dg~~~~~~~~~~~~~~v 276 (305)
-| .|+++++-|.|.=
T Consensus 85 --Tm--------pGASSSLVVK~AD 99 (371)
T KOG0146|consen 85 --TM--------PGASSSLVVKFAD 99 (371)
T ss_pred --cC--------CCCccceEEEecc
Confidence 33 4578899888863
No 48
>KOG0106|consensus
Probab=82.03 E-value=1.6 Score=40.86 Aligned_cols=136 Identities=19% Similarity=0.221 Sum_probs=82.5
Q ss_pred hHHHHHHHHHhcCCCCcceeeeecCCcceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeecc------CCCC
Q psy6597 55 NYEVIEKIKYWAQPEEFSSLKVTKSTLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEA------KPDF 128 (305)
Q Consensus 55 nWEVmEkLk~~i~P~~fs~lkV~ksTlefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Ea------k~dF 128 (305)
.=+|.+-++...+-... . -|....|| |.+....+.-++.-|||++|.-.. +-|.-+.. ++--
T Consensus 15 ~~d~E~~f~~yg~~~d~---~-mk~gf~fv----~fed~rda~Dav~~l~~~~l~~e~----~vve~~r~~~~~~g~~~~ 82 (216)
T KOG0106|consen 15 ERDVERFFKGYGKIPDA---D-MKNGFGFV----EFEDPRDADDAVHDLDGKELCGER----LVVEHARGKRRGRGRPRG 82 (216)
T ss_pred hhHHHHHHhhccccccc---e-eeccccee----ccCchhhhhcccchhcCceeccee----eeeecccccccccCCCCC
Confidence 34555555555542221 1 13333455 456666778899999999986555 33333221 1111
Q ss_pred CCCCchhHhhhhcccCCCCCCCCCCCeE-EeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCcccccccc
Q psy6597 129 PTRHDWDSYFRDAKNMNEMKPGERPDTI-YLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKP 207 (305)
Q Consensus 129 PtrhdWdsfFrdak~m~E~kpgeRPDTI-~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~ 207 (305)
+-|+.|.+++. ++.+-++. .++++ ..||.... +...|..+|++.+.++ |.
T Consensus 83 g~r~~~~~~~~---------~p~~s~~r~~~~~~-~~r~~~qd---------l~d~~~~~g~~~~~~~---------~~- 133 (216)
T KOG0106|consen 83 GDRRSDSRRYR---------PPSRTHFRLIVRNL-SLRVSWQD---------LKDHFRPAGEVTYVDA---------RR- 133 (216)
T ss_pred CCccchhhccC---------Ccccccceeeeccc-hhhhhHHH---------HhhhhcccCCCchhhh---------hc-
Confidence 13444543333 44444444 44444 34444444 9999999999977776 22
Q ss_pred CCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 208 YISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 208 ~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
| .++|||. ++.+--+|++.|.|.+
T Consensus 134 ---~------------~~~v~Fs---~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 134 ---N------------FAFVEFS---EQEDAKRALEKLDGKK 157 (216)
T ss_pred ---c------------ccceeeh---hhhhhhhcchhccchh
Confidence 1 3689999 9999999999999999
No 49
>KOG0116|consensus
Probab=80.72 E-value=2.5 Score=43.00 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=51.6
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
+-.-.=||++.+||.. -++..|..+|..||.|+..-|+..- .+....|-+||-
T Consensus 284 ~~~~~~~i~V~nlP~d----------a~~~~l~~~Fk~FG~Ik~~~I~vr~-----------------~~~~~~~fgFV~ 336 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPD----------ATPAELEEVFKQFGPIKEGGIQVRS-----------------PGGKNPCFGFVE 336 (419)
T ss_pred eeecccceEeecCCCC----------CCHHHHHHHHhhcccccccceEEec-----------------cCCCcCceEEEE
Confidence 3344445999999963 2455599999999999999985522 122234999999
Q ss_pred ecCCCChhHHHHHHHH----HhCCC
Q psy6597 229 KLPGTDHVTMFIQVDI----ISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~a----LrGmk 249 (305)
|+ +-.+-.+|+.| +-|++
T Consensus 337 f~---~~~~~~~~i~Asp~~ig~~k 358 (419)
T KOG0116|consen 337 FE---NAAAVQNAIEASPLEIGGRK 358 (419)
T ss_pred Ee---ecchhhhhhhcCccccCCee
Confidence 99 88888888876 44555
No 50
>KOG0126|consensus
Probab=80.67 E-value=0.15 Score=47.27 Aligned_cols=91 Identities=24% Similarity=0.465 Sum_probs=64.8
Q ss_pred CCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCC
Q psy6597 131 RHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYIS 210 (305)
Q Consensus 131 rhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~ 210 (305)
..+|-.-|.|+. -|||-|||--- +|.-+-.||+.||+|-+|+. -|..-+ |-
T Consensus 25 ~~SWH~~YkdsA------------~Iyiggl~~~L----------tEgDil~VFSqyGe~vdinL-----iRDk~T--GK 75 (219)
T KOG0126|consen 25 KKSWHQEYKDSA------------YIYIGGLPYEL----------TEGDILCVFSQYGEIVDINL-----IRDKKT--GK 75 (219)
T ss_pred ccchhhhcccce------------EEEECCCcccc----------cCCcEEEEeeccCceEEEEE-----EecCCC--Cc
Confidence 589988887753 69999999642 34447889999999999998 122221 21
Q ss_pred CCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEEec
Q psy6597 211 GMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVVMC 278 (305)
Q Consensus 211 ~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~~ 278 (305)
. ++| ||+-|+ +-.+=+-|+|-|.|-| + + | +.+.|+-.-.+
T Consensus 76 S-KGF---------aFLcYE---DQRSTILAVDN~NGik----i--~---g------RtirVDHv~~Y 115 (219)
T KOG0126|consen 76 S-KGF---------AFLCYE---DQRSTILAVDNLNGIK----I--L---G------RTIRVDHVSNY 115 (219)
T ss_pred c-cce---------EEEEec---CccceEEEEeccCCce----e--c---c------eeEEeeecccc
Confidence 1 222 688999 8888888999999999 5 2 4 36777766665
No 51
>KOG0112|consensus
Probab=80.50 E-value=1.9 Score=47.68 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=46.9
Q ss_pred HHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCCccceeee
Q psy6597 177 EAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMDYTTIIML 256 (305)
Q Consensus 177 e~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk~~~~L~~ 256 (305)
.+.+.++|..||.||+||+-- |+. =|||||+ .-..-.-||+.+||-+ |
T Consensus 469 ~~~l~r~fd~fGpir~Idy~h--------------------gq~---yayi~ye---s~~~aq~a~~~~rgap----~-- 516 (975)
T KOG0112|consen 469 VSRLNREFDRFGPIRIIDYRH--------------------GQP---YAYIQYE---SPPAAQAATHDMRGAP----L-- 516 (975)
T ss_pred HHHHHHHhhccCcceeeeccc--------------------CCc---ceeeecc---cCccchhhHHHHhcCc----C--
Confidence 577899999999999999822 222 2689999 8888889999999999 5
Q ss_pred ecccCCCCCCcceEEEEEEEec
Q psy6597 257 KASRKTSGGASKSMCVTYVVMC 278 (305)
Q Consensus 257 K~~dg~~~~~~~~~~~~~~v~~ 278 (305)
+... +++.|+|+=+-
T Consensus 517 -G~P~------~r~rvdla~~~ 531 (975)
T KOG0112|consen 517 -GGPP------RRLRVDLASPP 531 (975)
T ss_pred -CCCC------cccccccccCC
Confidence 3222 35677765443
No 52
>KOG4206|consensus
Probab=78.80 E-value=6.1 Score=37.29 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=46.2
Q ss_pred CCCC-eEEeCCCcccccccCCCCCCCcHHHHHH----HHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEE
Q psy6597 151 ERPD-TIYLSNLPVKWFSTKARPNQPSEAMLRR----VFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKT 225 (305)
Q Consensus 151 eRPD-TI~l~gLP~rWFa~~~~~~kPSe~vl~~----VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Fea 225 (305)
..|- ||||.+|+ +|=--+.|++ +|+.||+|-.|- ++-+- .+-=.|
T Consensus 6 ~~pn~TlYInnLn----------ekI~~~elkrsL~~LFsqfG~ildI~--a~kt~------------------KmRGQA 55 (221)
T KOG4206|consen 6 VNPNGTLYINNLN----------EKIKKDELKRSLYLLFSQFGKILDIS--AFKTP------------------KMRGQA 55 (221)
T ss_pred cCCCceEeehhcc----------ccccHHHHHHHHHHHHHhhCCeEEEE--ecCCC------------------CccCce
Confidence 3444 99999996 4444455566 999999995443 32111 111248
Q ss_pred EEeecCCCChhHHHHHHHHHhCCC
Q psy6597 226 QLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 226 yVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
||=|. +-..-.+||++|.|--
T Consensus 56 ~VvFk---~~~~As~A~r~l~gfp 76 (221)
T KOG4206|consen 56 FVVFK---ETEAASAALRALQGFP 76 (221)
T ss_pred EEEec---ChhHHHHHHHHhcCCc
Confidence 99999 9999999999999965
No 53
>KOG1855|consensus
Probab=75.86 E-value=2.5 Score=43.56 Aligned_cols=105 Identities=21% Similarity=0.274 Sum_probs=67.3
Q ss_pred ceEEecCCCcceEEEeeccCCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHh
Q psy6597 106 RTIKLSGFADGLRVRATEAKPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQ 185 (305)
Q Consensus 106 ~~lkLsGf~~~LkVra~Eak~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe 185 (305)
++-||.==.+.=|||-++.-.+|+.. |++ --||+.++||- -+|-+=|..||+
T Consensus 202 ~S~kL~vseDgkKVrRisPlp~~~~e--------------el~----srtivaenLP~----------Dh~~enl~kiFg 253 (484)
T KOG1855|consen 202 KSSKLEVSEDGKKVRRISPLPEFDEE--------------ELP----SRTIVAENLPL----------DHSYENLSKIFG 253 (484)
T ss_pred hcceEEEccCCceeeecCCCCCcccc--------------ccc----cceEEEecCCc----------chHHHHHHHHhh
Confidence 44444444556688876654444321 122 23899999994 345577899999
Q ss_pred ccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHH
Q psy6597 186 NYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDII 245 (305)
Q Consensus 186 ~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aL 245 (305)
++|.|.+|-| |+|= .+.++++++..-.|.-+----|.|-|+ +-..--||-+.|
T Consensus 254 ~~G~IksIRI--ckPg--aip~d~r~~~~~~~~~~tk~~AlvEye---~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 254 TVGSIKSIRI--CKPG--AIPEDVRGFPKKYFELQTKECALVEYE---EVEAARKARELL 306 (484)
T ss_pred cccceeeeee--cCCC--CCCcccccCCccchhhhhhhhhhhhhh---hhHHHHHHHHhh
Confidence 9999999887 8886 233334444432333222334788888 888888888877
No 54
>KOG4212|consensus
Probab=75.46 E-value=8.3 Score=40.23 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=59.6
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
.....++|.+++||..+ .=.+|+.-|..||.|--+|| |.. |. |-| .|.
T Consensus 532 aarKa~qIiirNlP~df----------TWqmlrDKfre~G~v~yadi---------me~-Gk-----skG-------VVr 579 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDF----------TWQMLRDKFREIGHVLYADI---------MEN-GK-----SKG-------VVR 579 (608)
T ss_pred ccccccEEEEecCCccc----------cHHHHHHHHHhccceehhhh---------hcc-CC-----ccc-------eEE
Confidence 34567999999999653 12579999999999999999 331 11 222 789
Q ss_pred ecCCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEE
Q psy6597 229 KLPGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTY 274 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~ 274 (305)
|. ...+--+|..++.||+ | || +.++|+|
T Consensus 580 F~---s~edAEra~a~Mngs~----l-----~G------r~I~V~y 607 (608)
T KOG4212|consen 580 FF---SPEDAERACALMNGSR----L-----DG------RNIKVTY 607 (608)
T ss_pred ec---CHHHHHHHHHHhccCc----c-----cC------ceeeeee
Confidence 99 9999999999999999 7 47 4888887
No 55
>KOG4660|consensus
Probab=71.17 E-value=5.1 Score=42.14 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 173 NQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 173 ~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.--|+.-|+++|++||+||. | |+.+. -.+-.||-|= +-.+--.|+++|||+-
T Consensus 85 ~~Vsn~~L~~~f~~yGeir~--i------r~t~~--------------~~~~~~v~Fy---DvR~A~~Alk~l~~~~ 136 (549)
T KOG4660|consen 85 RSVSNDTLLRIFGAYGEIRE--I------RETPN--------------KRGIVFVEFY---DVRDAERALKALNRRE 136 (549)
T ss_pred CcCCHHHHHHHHHhhcchhh--h------hcccc--------------cCceEEEEEe---ehHhHHHHHHHHHHHH
Confidence 34578889999999999998 4 22221 1345688888 9999999999999988
No 56
>KOG1190|consensus
Probab=69.08 E-value=12 Score=38.72 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=43.4
Q ss_pred CCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 172 PNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 172 ~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.+.-.+.+|.++|..||.|-+|-|-- ++ + =.|-|||. +-.--.-||+.|.|.|
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~-----nk--------k---------d~ALIQms---d~~qAqLA~~hL~g~~ 359 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILY-----NK--------K---------DNALIQMS---DGQQAQLAMEHLEGHK 359 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeee-----cC--------C---------cceeeeec---chhHHHHHHHHhhcce
Confidence 35567889999999999999999921 11 1 13789999 9999999999999999
No 57
>KOG0122|consensus
Probab=67.90 E-value=15 Score=35.64 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=51.6
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
||-+.||| +--.|.-|...|-+||.|-+|-+.+ .+.+ |- .++| |||-|+ .
T Consensus 191 tvRvtNLs----------ed~~E~dL~eLf~~fg~i~rvylar-----dK~T--G~-~kGF---------AFVtF~---s 240 (270)
T KOG0122|consen 191 TVRVTNLS----------EDMREDDLEELFRPFGPITRVYLAR-----DKET--GL-SKGF---------AFVTFE---S 240 (270)
T ss_pred eeEEecCc----------cccChhHHHHHhhccCccceeEEEE-----cccc--Cc-ccce---------EEEEEe---c
Confidence 57777776 3334566899999999999999844 2222 22 2333 789999 9
Q ss_pred hhHHHHHHHHHhCCCcccee
Q psy6597 235 HVTMFIQVDIISGMDYTTII 254 (305)
Q Consensus 235 y~~F~kAM~aLrGmk~~~~L 254 (305)
-.+-.+|++-|.|.-|...+
T Consensus 241 RddA~rAI~~LnG~gyd~LI 260 (270)
T KOG0122|consen 241 RDDAARAIADLNGYGYDNLI 260 (270)
T ss_pred HHHHHHHHHHccCcccceEE
Confidence 99999999999999865544
No 58
>KOG0105|consensus
Probab=67.02 E-value=7.5 Score=36.60 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=40.4
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
--+||+-|||-.- -|.-+..+|-|||+|+.||+-. - -++-+=|||.||
T Consensus 6 ~~~iyvGNLP~di----------RekeieDlFyKyg~i~~ieLK~-------r-------------~g~ppfafVeFE-- 53 (241)
T KOG0105|consen 6 SRRIYVGNLPGDI----------REKEIEDLFYKYGRIREIELKN-------R-------------PGPPPFAFVEFE-- 53 (241)
T ss_pred cceEEecCCCcch----------hhccHHHHHhhhcceEEEEecc-------C-------------CCCCCeeEEEec--
Confidence 3479999998532 1333788999999999999821 1 124566899999
Q ss_pred CChhHHHHHHHHH
Q psy6597 233 TDHVTMFIQVDII 245 (305)
Q Consensus 233 ~ey~~F~kAM~aL 245 (305)
+-.+--.|+..-
T Consensus 54 -d~RDAeDAiygR 65 (241)
T KOG0105|consen 54 -DPRDAEDAIYGR 65 (241)
T ss_pred -Cccchhhhhhcc
Confidence 776654444433
No 59
>KOG0415|consensus
Probab=66.48 E-value=4.2 Score=41.32 Aligned_cols=40 Identities=10% Similarity=0.211 Sum_probs=28.9
Q ss_pred HHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhH
Q psy6597 178 AMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVT 237 (305)
Q Consensus 178 ~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~ 237 (305)
+-|+.||+.||+|++-+| +.+ .+ .+...+.|||.|+ .-.+
T Consensus 254 eDLeiIFSrFG~i~sceV---------IRD----~k----tgdsLqyaFiEFe---n~es 293 (479)
T KOG0415|consen 254 EDLEIIFSRFGKIVSCEV---------IRD----RK----TGDSLQYAFIEFE---NKES 293 (479)
T ss_pred cchhhHHhhcccceeeeE---------Eec----cc----ccchhheeeeeec---chhh
Confidence 458999999999999988 321 12 1245788999998 6554
No 60
>KOG0131|consensus
Probab=64.71 E-value=23 Score=33.10 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=37.1
Q ss_pred CcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 175 PSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 175 PSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
--|.+|+.+|++||.|-..-=+|-||+-.+- ++| +||-|. ....--+|+.++.|.=
T Consensus 108 vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~-------~~~---------g~i~~~---sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 108 VDEKLLYDTFSAFGVLISPPKIMRDPDTGNP-------KGF---------GFINYA---SFEASDAAIGSMNGQY 163 (203)
T ss_pred hhHHHHHHHHHhccccccCCcccccccCCCC-------CCC---------eEEech---hHHHHHHHHHHhccch
Confidence 3588999999999999776566666652221 222 355556 5566667777777765
No 61
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=63.53 E-value=18 Score=29.75 Aligned_cols=50 Identities=10% Similarity=0.133 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCC
Q psy6597 173 NQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGM 248 (305)
Q Consensus 173 ~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGm 248 (305)
+..|...++.+|+.||.|.-||+.. | .-++||-|. .-.+--+|++++.--
T Consensus 11 ~~~~re~iK~~f~~~g~V~yVD~~~--------------------G---~~~g~VRf~---~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 11 EPTSREDIKEAFSQFGEVAYVDFSR--------------------G---DTEGYVRFK---TPEAAQKALEKLKEA 60 (105)
T ss_dssp SS--HHHHHHHT-SS--EEEEE--T--------------------T----SEEEEEES---S---HHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHhcCCcceEEecC--------------------C---CCEEEEEEC---CcchHHHHHHHHHhc
Confidence 5567899999999999999999832 1 237999999 777766667666655
No 62
>KOG2314|consensus
Probab=62.60 E-value=13 Score=39.70 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=48.5
Q ss_pred eEEeCCCcccccccCCCCCC--CcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQ--PSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~k--PSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
.|++.|.|+= + +.+ -=..+++.||+++|+|-|+-+|.. + .+|.++ + +|+-|.
T Consensus 60 vVvv~g~PvV---~---~~rl~klk~vl~kvfsk~gk~vn~~~P~~--------e-~ggtkG------~---lf~E~~-- 113 (698)
T KOG2314|consen 60 VVVVDGAPVV---G---PARLEKLKKVLTKVFSKAGKIVNMYYPID--------E-EGGTKG------Y---LFVEYA-- 113 (698)
T ss_pred EEEECCCccc---C---hhHHHHHHHHHHHHHHhhccccceeeccC--------c-cCCeee------E---EEEEec--
Confidence 4778999973 1 122 123688999999999999999872 1 122222 2 456777
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
.-.+-..|++.|.|..
T Consensus 114 -~~~~A~~aVK~l~G~~ 129 (698)
T KOG2314|consen 114 -SMRDAKKAVKSLNGKR 129 (698)
T ss_pred -ChhhHHHHHHhcccce
Confidence 8888999999999999
No 63
>KOG0153|consensus
Probab=59.93 E-value=43 Score=33.95 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=56.0
Q ss_pred HhhhhcccCCCCCC--CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCc
Q psy6597 136 SYFRDAKNMNEMKP--GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMT 213 (305)
Q Consensus 136 sfFrdak~m~E~kp--geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~ 213 (305)
+++.-|-+|..++| .+.--|+||.||= +.-+|..++.=|.+||+||.+-| +.
T Consensus 209 kil~ra~~~~~lepPeD~~I~tLyIg~l~----------d~v~e~dIrdhFyqyGeirsi~~---------~~------- 262 (377)
T KOG0153|consen 209 KILNRAGSAGTLEPPEDTSIKTLYIGGLN----------DEVLEQDIRDHFYQYGEIRSIRI---------LP------- 262 (377)
T ss_pred HHHhhcccccccCCCcccceeEEEecccc----------cchhHHHHHHHHhhcCCeeeEEe---------ec-------
Confidence 44555545555544 4556789998872 35678899999999999999988 21
Q ss_pred cccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 214 LFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 214 ~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
+.+ =|||||. --.+--+|+..+-. +
T Consensus 263 ----~~~---CAFv~ft---TR~aAE~Aae~~~n-~ 287 (377)
T KOG0153|consen 263 ----RKG---CAFVTFT---TREAAEKAAEKSFN-K 287 (377)
T ss_pred ----ccc---cceeeeh---hhHHHHHHHHhhcc-e
Confidence 112 4899999 88888888888766 5
No 64
>KOG0127|consensus
Probab=55.24 E-value=57 Score=35.08 Aligned_cols=86 Identities=19% Similarity=0.277 Sum_probs=59.9
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
+||.|+|||.- -.|+-|..-|++||+|.-+-| .+||-= +. |-| -|||+|.
T Consensus 293 ~tVFvRNL~fD----------~tEEel~~~fskFG~v~ya~i-V~~k~T------~~-----skG-----tAFv~Fk--- 342 (678)
T KOG0127|consen 293 KTVFVRNLPFD----------TTEEELKEHFSKFGEVKYAII-VKDKDT------GH-----SKG-----TAFVKFK--- 342 (678)
T ss_pred ceEEEecCCcc----------ccHHHHHHHHHhhccceeEEE-EeccCC------CC-----ccc-----ceEEEec---
Confidence 69999999963 257789999999999988755 444421 11 233 3899999
Q ss_pred ChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEEec
Q psy6597 234 DHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVVMC 278 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~~ 278 (305)
.-....+|+.+..--.-.+-+.+ || +.++||-.|.-
T Consensus 343 t~~~~~~ci~~Aspa~e~g~~ll---~G------R~Lkv~~Av~R 378 (678)
T KOG0127|consen 343 TQIAAQNCIEAASPASEDGSVLL---DG------RLLKVTLAVTR 378 (678)
T ss_pred cHHHHHHHHHhcCccCCCceEEE---ec------cEEeeeeccch
Confidence 88888899988743332221223 46 48899988877
No 65
>KOG0123|consensus
Probab=54.34 E-value=21 Score=35.53 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=44.3
Q ss_pred CCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 173 NQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 173 ~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
..+.|..|..+|+..|+|..|-| -. .+ + ...-|||+|+ +-.+--+||+++..-.
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rv---------c~----d~-t------slgy~yvnf~---~~~da~~A~~~~n~~~ 61 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRV---------CR----DA-T------SLGYAYVNFQ---QPADAERALDTMNFDV 61 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEE---------ee----cC-C------ccceEEEecC---CHHHHHHHHHHcCCcc
Confidence 56789999999999999999888 22 21 1 3557999999 9999999999987655
No 66
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=53.91 E-value=32 Score=24.97 Aligned_cols=19 Identities=21% Similarity=0.593 Sum_probs=15.3
Q ss_pred HHHHHHHhccCcceeecCC
Q psy6597 178 AMLRRVFQNYGDIREVDIP 196 (305)
Q Consensus 178 ~vl~~VFe~FG~IR~vDIP 196 (305)
+.+..=|..||+|-+..+|
T Consensus 15 ~~vl~~F~~fGeI~~~~~~ 33 (53)
T PF14605_consen 15 EEVLEHFASFGEIVDIYVP 33 (53)
T ss_pred HHHHHHHHhcCCEEEEEcC
Confidence 3344588999999999997
No 67
>KOG0108|consensus
Probab=53.39 E-value=46 Score=34.25 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=60.2
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
=+|++.++|--| ||+.|..||+.-|.|-.+.+- +|+ ..+.+++| +|++|.
T Consensus 19 ~~v~vgnip~~~----------se~~l~~~~~~~g~v~s~~~v-~D~-------~tG~~~G~---------~f~~~~--- 68 (435)
T KOG0108|consen 19 SSVFVGNIPYEG----------SEEQLLSIFSGVGPVLSFRLV-YDR-------ETGKPKGF---------GFCEFT--- 68 (435)
T ss_pred cceEecCCCCcc----------cHHHHHHHHhccCccceeeec-ccc-------cCCCcCce---------eeEecC---
Confidence 679999999888 789999999999999887762 111 13334443 477888
Q ss_pred ChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEEec
Q psy6597 234 DHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVVMC 278 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~~ 278 (305)
+-.+-.+|++-|.|.+ + .|+ .++|+|...-
T Consensus 69 ~~~~~~~a~~~lNg~~----~-----~gr------~l~v~~~~~~ 98 (435)
T KOG0108|consen 69 DEETAERAIRNLNGAE----F-----NGR------KLRVNYASNR 98 (435)
T ss_pred chhhHHHHHHhcCCcc----c-----CCc------eEEeeccccc
Confidence 8889999999999999 4 263 6777766655
No 68
>KOG0124|consensus
Probab=48.34 E-value=13 Score=38.07 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHhccCcceeecC
Q psy6597 173 NQPSEAMLRRVFQNYGDIREVDI 195 (305)
Q Consensus 173 ~kPSe~vl~~VFe~FG~IR~vDI 195 (305)
---||.-++.|||.||+|..--.
T Consensus 220 pDLSe~DiKSVFEAFG~I~~C~L 242 (544)
T KOG0124|consen 220 PDLSETDIKSVFEAFGEIVKCQL 242 (544)
T ss_pred CCccHHHHHHHHHhhcceeeEEe
Confidence 44689999999999999987766
No 69
>KOG0144|consensus
Probab=45.26 E-value=52 Score=34.39 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=42.4
Q ss_pred CCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 173 NQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 173 ~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.--||.-++++||+||.|-.|+|+- .+++ + .+.-.| ||-|- .-.+-.+|..||-.+|
T Consensus 44 rt~sE~dlr~lFe~yg~V~einl~k-----Dk~t--~--------~s~gcC--Fv~~~---trk~a~~a~~Alhn~k 100 (510)
T KOG0144|consen 44 RTASEKDLRELFEKYGNVYEINLIK-----DKST--G--------QSKGCC--FVKYY---TRKEADEAINALHNQK 100 (510)
T ss_pred ccccHHHHHHHHHHhCceeEEEeec-----cccc--C--------cccceE--EEEec---cHHHHHHHHHHhhccc
Confidence 4448999999999999999999954 2333 1 111233 78888 8888889999998887
No 70
>KOG0124|consensus
Probab=40.16 E-value=45 Score=34.42 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=41.4
Q ss_pred CCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 174 QPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 174 kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.--|+.+++.|..||.|+.+|..- ||--- . -++ | |||.|| -..+-.-|++.+.|.-
T Consensus 124 El~EDtiR~AF~PFGPIKSInMSW-Dp~T~------k-HKg--------F-AFVEYE---vPEaAqLAlEqMNg~m 179 (544)
T KOG0124|consen 124 ELREDTIRRAFDPFGPIKSINMSW-DPATG------K-HKG--------F-AFVEYE---VPEAAQLALEQMNGQM 179 (544)
T ss_pred EechHHHHhhccCCCCcceeeccc-ccccc------c-ccc--------e-EEEEEe---CcHHHHHHHHHhcccc
Confidence 345889999999999999999732 33211 1 022 2 799999 9999999999888765
No 71
>KOG2202|consensus
Probab=38.57 E-value=18 Score=34.94 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=36.5
Q ss_pred HHHh-ccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 182 RVFQ-NYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 182 ~VFe-~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
+=|+ +||+|.+++| || ..+.++-=.|||||+ +=.+-.+|.+.|.|+=
T Consensus 87 ~E~~~kygEiee~~V--c~----------------Nl~~hl~GNVYV~f~---~Ee~ae~a~~~lnnRw 134 (260)
T KOG2202|consen 87 TELEDKYGEIEELNV--CD----------------NLGDHLVGNVYVKFR---SEEDAEAALEDLNNRW 134 (260)
T ss_pred HHHHHHhhhhhhhhh--hc----------------ccchhhhhhhhhhcc---cHHHHHHHHHHHcCcc
Confidence 3344 9999999977 11 223345556999999 9999999999999997
No 72
>KOG0145|consensus
Probab=33.15 E-value=97 Score=30.78 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=41.1
Q ss_pred cHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 176 SEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 176 Se~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.++=++..|.+-|+|-.... -|.+.+ | -|+|= .||.|. .-.|--+|+..|.|-+
T Consensus 54 TqdE~rSLF~SiGeiEScKL-----vRDKit----G---qSLGY-----GFVNYv---~p~DAe~AintlNGLr 107 (360)
T KOG0145|consen 54 TQDELRSLFGSIGEIESCKL-----VRDKIT----G---QSLGY-----GFVNYV---RPKDAEKAINTLNGLR 107 (360)
T ss_pred CHHHHHHHhhcccceeeeee-----eecccc----c---ccccc-----ceeeec---ChHHHHHHHhhhccee
Confidence 56679999999999987765 333333 1 14442 388999 9999999999999999
No 73
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=32.62 E-value=17 Score=31.93 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=22.1
Q ss_pred ccccHHHHHhhcCCceEEecCCCcceE
Q psy6597 92 NRSKLLPVLARLDGRTIKLSGFADGLR 118 (305)
Q Consensus 92 ~r~~~~~v~~kLdG~~lkLsGf~~~Lk 118 (305)
.+.....++..|||+.++|.||--+|.
T Consensus 42 ~~~~~~~~v~~L~Gk~V~i~Gf~vPle 68 (146)
T PF11736_consen 42 RQWASAPVVKALDGKQVRIPGFMVPLE 68 (146)
T ss_pred hhhcccchhHHhCCCEEEEeeEEEeec
Confidence 344456889999999999999988775
No 74
>KOG0533|consensus
Probab=29.62 E-value=2.2e+02 Score=27.31 Aligned_cols=86 Identities=21% Similarity=0.328 Sum_probs=59.4
Q ss_pred chhH---hhhhcccCCCC-CCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccC
Q psy6597 133 DWDS---YFRDAKNMNEM-KPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPY 208 (305)
Q Consensus 133 dWds---fFrdak~m~E~-kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~ 208 (305)
-|.+ -|++++.+.-. ....+|-+|+++|||-. -..+-++..|+.||.+..|-|-. +.+
T Consensus 59 ~w~~~~~v~~~~~~~~~~~~~~~~~~~v~v~NL~~~----------V~~~Dl~eLF~~~~~~~r~~vhy--------~~~ 120 (243)
T KOG0533|consen 59 KWQHDRDVFRSAKRLGAVGINETRSTKVNVSNLPYG----------VIDADLKELFAEFGELKRVAVHY--------DRA 120 (243)
T ss_pred cccchHHHHhcccccccccccCCCcceeeeecCCcC----------cchHHHHHHHHHhccceEEeecc--------CCC
Confidence 3854 77877655222 25678999999999954 35666999999999999887733 222
Q ss_pred CCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 209 ISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 209 ~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
|. |.| +++ |-|+ .+.+-..||+.+.|--
T Consensus 121 G~-----s~G---ta~--v~~~---r~~DA~~avk~~~gv~ 148 (243)
T KOG0533|consen 121 GR-----SLG---TAD--VSFN---RRDDAERAVKKYNGVA 148 (243)
T ss_pred CC-----CCc---cce--eeec---chHhHHHHHHHhcCcc
Confidence 22 222 222 3355 7889999999999944
No 75
>KOG0109|consensus
Probab=25.89 E-value=56 Score=32.65 Aligned_cols=34 Identities=41% Similarity=0.745 Sum_probs=23.7
Q ss_pred cccccccCCCCCCCcHHHHHHHHhccCcceeecCC
Q psy6597 162 PVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIP 196 (305)
Q Consensus 162 P~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP 196 (305)
|+|-|...- .++-.+.=++.+||+||||-.-||-
T Consensus 2 ~~KLFIGNL-p~~~~~~elr~lFe~ygkVlECDIv 35 (346)
T KOG0109|consen 2 PVKLFIGNL-PREATEQELRSLFEQYGKVLECDIV 35 (346)
T ss_pred ccchhccCC-CcccchHHHHHHHHhhCceEeeeee
Confidence 344444332 3455667799999999999998883
No 76
>KOG0131|consensus
Probab=22.91 E-value=65 Score=30.24 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=46.8
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
=-|||+-||| +|-|+.+|...|-.=|.|-||.||-+ -++.. -++| +|++|.
T Consensus 9 d~tiyvgnld----------~kvs~~~l~EL~iqagpVv~i~iPkD-rv~~~-------~qGy---------gF~Ef~-- 59 (203)
T KOG0131|consen 9 DATLYVGNLD----------EKVSEELLYELFIQAGPVVNLHIPKD-RVTQK-------HQGY---------GFAEFR-- 59 (203)
T ss_pred CceEEEecCC----------HHHHHHHHHHHHHhcCceeeeecchh-hhccc-------ccce---------eEEEEe--
Confidence 3589999987 56799999999999999999999863 11110 1222 467787
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
.=.+--=|.+.|++-|
T Consensus 60 -~eedadYAikiln~Vk 75 (203)
T KOG0131|consen 60 -TEEDADYAIKILNMVK 75 (203)
T ss_pred -chhhhHHHHHHHHHHH
Confidence 4445555666666655
No 77
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.55 E-value=33 Score=31.05 Aligned_cols=30 Identities=37% Similarity=0.586 Sum_probs=23.7
Q ss_pred ccccccccHHHHHhhcCCceEEecCCCcceE
Q psy6597 88 GEIENRSKLLPVLARLDGRTIKLSGFADGLR 118 (305)
Q Consensus 88 gE~e~r~~~~~v~~kLdG~~lkLsGf~~~Lk 118 (305)
||..+ ...-.++..|||+.+||.|+.-+|.
T Consensus 55 g~~as-qq~p~vvk~LdG~~~klpGy~vPle 84 (166)
T COG3495 55 GEPAS-QQIPTVVKELDGSATKLPGYAVPLE 84 (166)
T ss_pred Cchhh-hcCcchhhhcccceeccCcceeecc
Confidence 44444 5566899999999999999977663
No 78
>KOG0147|consensus
Probab=22.10 E-value=2.4e+02 Score=30.23 Aligned_cols=61 Identities=8% Similarity=0.032 Sum_probs=46.7
Q ss_pred HHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCCccceeee
Q psy6597 177 EAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMDYTTIIML 256 (305)
Q Consensus 177 e~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk~~~~L~~ 256 (305)
|+|+... ++||+|-.|-| +.| + . +-+||-|+ .-..-..|.++|-|+= .
T Consensus 468 edV~Eec-~k~g~v~hi~v-------------d~n-------s-~-g~VYvrc~---s~~~A~~a~~alhgrW----F-- 515 (549)
T KOG0147|consen 468 EDVIEEC-GKHGKVCHIFV-------------DKN-------S-A-GCVYVRCP---SAEAAGTAVKALHGRW----F-- 515 (549)
T ss_pred HHHHHHH-HhcCCeeEEEE-------------ccC-------C-C-ceEEEecC---cHHHHHHHHHHHhhhh----h--
Confidence 4566666 88999877766 111 2 2 78999999 9999999999999997 3
Q ss_pred ecccCCCCCCcceEEEEEEEec
Q psy6597 257 KASRKTSGGASKSMCVTYVVMC 278 (305)
Q Consensus 257 K~~dg~~~~~~~~~~~~~~v~~ 278 (305)
+| +-|+|+|...-
T Consensus 516 ---~g------r~Ita~~~~~~ 528 (549)
T KOG0147|consen 516 ---AG------RMITAKYLPLE 528 (549)
T ss_pred ---cc------ceeEEEEeehh
Confidence 25 48899997755
No 79
>KOG3152|consensus
Probab=21.83 E-value=36 Score=33.25 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=69.1
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCC-CCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPI-NDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~-lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
+--.|||+++|=.- .+ .-|+.||+.||+|-+|=+.. .|-.|.+-.- ++++. .-.+=|.||-|.
T Consensus 73 k~GVvylS~IPp~m-~~---------~rlReil~~yGeVGRvylqpE~~s~~~~r~~-~~~n~-----~~~y~EGWvEF~ 136 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYM-DP---------VRLREILSQYGEVGRVYLQPEDDSKRAARKR-KGGNY-----KKLYSEGWVEFI 136 (278)
T ss_pred cceEEEeccCCCcc-CH---------HHHHHHHHhccccceEEecchhhHHHHHHhh-cCCCc-----cccchhHHHHHH
Confidence 34689999999543 22 23999999999999998754 4444544432 22222 234567899998
Q ss_pred CCCChhHHHHHHHHHhCCCccceeeeecccCCCC-CCcceEEEEEEEecchhhH-----HHHHhhhhh
Q psy6597 231 PGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSG-GASKSMCVTYVVMCMAMEI-----SALHALHLT 292 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~-~~~~~~~~~~~v~~~~~~~-----~~~~~r~~~ 292 (305)
.=..--++.+.|.|.- +- +..++.- +---+|+-==...|.||++ .|+|++|+.
T Consensus 137 ---~KrvAK~iAe~Lnn~~----Ig--gkk~S~~~~dlWNmKYLprFKW~hLTEqiayE~avrk~RL~ 195 (278)
T KOG3152|consen 137 ---SKRVAKRIAELLNNTP----IG--GKKKSPFRDDLWNMKYLPRFKWVHLTEQIAYENAVRKQRLN 195 (278)
T ss_pred ---HHHHHHHHHHHhCCCc----cC--CCCCCchHHhhhhhhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766 31 1112100 0000122222345788886 477777764
No 80
>KOG0129|consensus
Probab=21.83 E-value=6.6e+02 Score=26.90 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=68.7
Q ss_pred eEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCC-CCC--CCchhHhhhhcccCCCCCCCCCCCeEEeC
Q psy6597 83 FVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPD-FPT--RHDWDSYFRDAKNMNEMKPGERPDTIYLS 159 (305)
Q Consensus 83 fiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~d-FPt--rhdWdsfFrdak~m~E~kpgeRPDTI~l~ 159 (305)
|+-||.|=.-+.+++....-.++-- |+|+...-++- -.- ---||+.|-.. -..+=.-=-||.+-
T Consensus 310 flvFe~E~sV~~Ll~aC~~~~~~~y---------f~vss~~~k~k~VQIrPW~laDs~fv~d----~sq~lDprrTVFVG 376 (520)
T KOG0129|consen 310 FLVFEDERSVQSLLSACSEGEGNYY---------FKVSSPTIKDKEVQIRPWVLADSDFVLD----HNQPIDPRRTVFVG 376 (520)
T ss_pred EEEecchHHHHHHHHHHhhcccceE---------EEEecCcccccceeEEeeEeccchhhhc----cCcccCccceEEec
Confidence 6789987655666666666444433 44444333322 110 12356666532 11222233499999
Q ss_pred CCcccccccCCCCCCCcHHHHHHHHh-ccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHH
Q psy6597 160 NLPVKWFSTKARPNQPSEAMLRRVFQ-NYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTM 238 (305)
Q Consensus 160 gLP~rWFa~~~~~~kPSe~vl~~VFe-~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F 238 (305)
|||- +-.-..|..||+ -||.|-.|-|=.+-.| +|-.|++ =|-|. ++.+|
T Consensus 377 gvpr----------pl~A~eLA~imd~lyGgV~yaGIDtD~k~------------KYPkGaG-----RVtFs---nqqsY 426 (520)
T KOG0129|consen 377 GLPR----------PLTAEELAMIMEDLFGGVLYVGIDTDPKL------------KYPKGAG-----RVTFS---NQQAY 426 (520)
T ss_pred CCCC----------cchHHHHHHHHHHhcCceEEEEeccCccc------------CCCCCcc-----eeeec---ccHHH
Confidence 9983 334566999999 9999999877332122 2233322 25566 88888
Q ss_pred HHHHHH
Q psy6597 239 FIQVDI 244 (305)
Q Consensus 239 ~kAM~a 244 (305)
++|+.+
T Consensus 427 i~AIsa 432 (520)
T KOG0129|consen 427 IKAISA 432 (520)
T ss_pred HHHHhh
Confidence 888875
No 81
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=21.22 E-value=2e+02 Score=29.59 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=54.6
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
.-+|+-|||-+-=-+.. ...+--+.-|..||+|..|-|-- -.+ +.+.+ .+ +.-+||-|.
T Consensus 115 NLvYVigi~pkva~Ee~----~~vLk~~eyFGQyGkI~KIvvNk-------kt~--s~nst---~~--h~gvYITy~--- 173 (480)
T COG5175 115 NLVYVIGIPPKVADEEV----APVLKRHEYFGQYGKIKKIVVNK-------KTS--SLNST---AS--HAGVYITYS--- 173 (480)
T ss_pred ceeEEecCCCCCCcccc----cccccchhhhhhccceeEEEecc-------ccc--ccccc---cc--cceEEEEec---
Confidence 46788888765422211 11112367899999999988822 111 11111 11 566899999
Q ss_pred ChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEE
Q psy6597 234 DHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYV 275 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~ 275 (305)
.-.+-.+|+.+.-|-- | || +-++|+|-
T Consensus 174 ~kedAarcIa~vDgs~----~-----DG------r~lkatYG 200 (480)
T COG5175 174 TKEDAARCIAEVDGSL----L-----DG------RVLKATYG 200 (480)
T ss_pred chHHHHHHHHHhcccc----c-----cC------ceEeeecC
Confidence 9999999999988865 3 56 36777774
No 82
>KOG0148|consensus
Probab=20.76 E-value=1.7e+02 Score=29.11 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=36.6
Q ss_pred CcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 175 PSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 175 PSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
-+-+.|+..|.+||+|.+.-|- | +|.- +.+ ++| +||-|- .-.+--+|++.+.|.=
T Consensus 74 I~~e~lr~aF~pFGevS~akvi-----r-D~~T-~Ks-KGY---------gFVSf~---~k~dAEnAI~~MnGqW 128 (321)
T KOG0148|consen 74 IDNEKLREAFAPFGEVSDAKVI-----R-DMNT-GKS-KGY---------GFVSFP---NKEDAENAIQQMNGQW 128 (321)
T ss_pred cchHHHHHHhccccccccceEe-----e-cccC-Ccc-cce---------eEEecc---chHHHHHHHHHhCCee
Confidence 3456799999999999988771 1 1210 111 322 367777 7778888888888754
No 83
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=20.22 E-value=48 Score=25.48 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=20.3
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhcc
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNY 187 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~F 187 (305)
-||+.|||+|+ +.-|..-+..-|.-|
T Consensus 3 ~rpeavhirGv-----------d~lsT~dI~~y~~~y 28 (62)
T PF10309_consen 3 IRPEAVHIRGV-----------DELSTDDIKAYFSEY 28 (62)
T ss_pred ceeceEEEEcC-----------CCCCHHHHHHHHHHh
Confidence 48999999997 345666677888887
Done!