Query psy6597
Match_columns 305
No_of_seqs 65 out of 67
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 22:10:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmr_A Cugbp ELAV-like family 98.4 2.8E-06 9.5E-11 68.2 11.3 138 52-249 14-160 (175)
2 1b7f_A Protein (SXL-lethal pro 98.3 1E-05 3.5E-10 64.6 12.5 135 52-249 14-155 (168)
3 3md3_A Nuclear and cytoplasmic 98.3 1.6E-05 5.3E-10 63.0 12.4 137 52-249 11-153 (166)
4 1fxl_A Paraneoplastic encephal 98.2 2E-05 6.7E-10 62.5 12.2 135 52-249 13-154 (167)
5 2yh0_A Splicing factor U2AF 65 98.2 4.1E-05 1.4E-09 62.9 14.5 157 52-249 15-180 (198)
6 2g4b_A Splicing factor U2AF 65 98.1 3.5E-05 1.2E-09 61.9 12.0 137 52-249 15-160 (172)
7 2lkz_A RNA-binding protein 5; 98.1 1.2E-05 4.1E-10 62.5 8.7 85 150-275 6-92 (95)
8 4a8x_A RNA-binding protein wit 98.1 9.6E-06 3.3E-10 59.3 7.7 70 151-249 2-71 (88)
9 2dnz_A Probable RNA-binding pr 98.1 2.4E-05 8.1E-10 58.3 9.6 70 150-249 2-71 (95)
10 2e5h_A Zinc finger CCHC-type a 98.1 2E-05 6.8E-10 58.6 9.0 69 151-249 14-82 (94)
11 4fxv_A ELAV-like protein 1; RN 98.1 1E-05 3.5E-10 62.6 7.4 66 154-249 20-85 (99)
12 3lqv_A PRE-mRNA branch site pr 98.1 2.4E-05 8.1E-10 60.6 9.3 67 150-249 5-71 (115)
13 2dnh_A Bruno-like 5, RNA bindi 98.0 2.8E-05 9.5E-10 59.1 9.5 69 150-249 12-80 (105)
14 4f25_A Polyadenylate-binding p 98.0 9.5E-06 3.2E-10 63.8 7.0 64 154-249 6-69 (115)
15 1whx_A Hypothetical protein ri 98.0 2.2E-05 7.7E-10 61.5 8.9 60 154-249 11-70 (111)
16 3r27_A HnRNP L, heterogeneous 98.0 2.1E-05 7.1E-10 62.9 8.8 83 143-274 11-93 (100)
17 3mdf_A Peptidyl-prolyl CIS-tra 98.0 2.8E-05 9.4E-10 56.7 8.7 69 151-249 5-73 (85)
18 2dgp_A Bruno-like 4, RNA bindi 98.0 3E-05 1E-09 59.0 9.2 70 150-249 10-79 (106)
19 2dnq_A RNA-binding protein 4B; 98.0 1.7E-05 5.7E-10 59.1 7.5 62 150-249 5-66 (90)
20 2ywk_A Putative RNA-binding pr 98.0 1.6E-05 5.6E-10 59.2 7.3 69 150-249 13-81 (95)
21 1x4d_A Matrin 3; structural ge 98.0 2.1E-05 7.1E-10 62.4 8.1 74 154-275 16-89 (102)
22 2cq3_A RNA-binding protein 9; 98.0 5.1E-05 1.7E-09 57.6 9.9 69 149-249 11-79 (103)
23 2dgx_A KIAA0430 protein; RRM d 98.0 2.3E-05 7.9E-10 59.4 8.0 64 153-249 9-76 (96)
24 2e44_A Insulin-like growth fac 98.0 2.7E-05 9.2E-10 58.3 8.1 67 149-249 11-78 (96)
25 1fje_B Nucleolin RBD12, protei 98.0 3.3E-05 1.1E-09 62.6 9.2 134 52-249 24-160 (175)
26 2kvi_A Nuclear polyadenylated 98.0 1.8E-05 6.1E-10 59.9 7.2 67 146-249 3-69 (96)
27 3tyt_A Heterogeneous nuclear r 98.0 0.00015 5E-09 62.8 13.8 148 60-249 20-189 (205)
28 2ghp_A U4/U6 snRNA-associated 98.0 5.1E-05 1.7E-09 66.8 11.1 145 51-249 127-277 (292)
29 1x5s_A Cold-inducible RNA-bind 98.0 4.6E-05 1.6E-09 57.6 9.3 70 150-249 9-78 (102)
30 2dgt_A RNA-binding protein 30; 98.0 3.9E-05 1.3E-09 57.2 8.8 62 150-249 7-68 (92)
31 3smz_A Protein raver-1, ribonu 98.0 7.2E-05 2.5E-09 65.6 11.9 139 51-249 105-250 (284)
32 2adc_A Polypyrimidine tract-bi 98.0 0.00013 4.4E-09 63.0 13.1 151 52-249 46-213 (229)
33 1wex_A Hypothetical protein (r 98.0 1.8E-05 6.1E-10 62.4 7.1 60 154-249 16-75 (104)
34 1x4a_A Splicing factor, argini 98.0 4.2E-05 1.4E-09 58.8 9.0 66 151-249 20-85 (109)
35 2qfj_A FBP-interacting repress 98.0 5.2E-05 1.8E-09 63.1 10.2 146 52-249 39-191 (216)
36 2fy1_A RNA-binding motif prote 98.0 3.9E-05 1.3E-09 60.6 9.0 69 150-249 4-72 (116)
37 2lxi_A RNA-binding protein 10; 97.9 1.8E-05 6.2E-10 60.0 6.5 65 154-248 2-67 (91)
38 2cqi_A Nucleolysin TIAR; RNA r 97.9 5.4E-05 1.8E-09 57.5 9.1 69 149-249 11-79 (103)
39 2cqb_A Peptidyl-prolyl CIS-tra 97.9 5.3E-05 1.8E-09 57.2 9.0 70 150-249 9-78 (102)
40 1qm9_A Polypyrimidine tract-bi 97.9 0.00013 4.5E-09 60.5 12.1 149 52-249 15-182 (198)
41 2cph_A RNA binding motif prote 97.9 9.3E-05 3.2E-09 56.2 10.3 71 150-249 12-83 (107)
42 3pgw_A U1-A; protein-RNA compl 97.9 0.00049 1.7E-08 60.3 16.3 61 154-249 208-268 (282)
43 1whw_A Hypothetical protein ri 97.9 6.3E-05 2.2E-09 56.5 9.1 69 151-249 6-74 (99)
44 1x5u_A Splicing factor 3B subu 97.9 7.8E-05 2.7E-09 56.6 9.7 70 150-249 12-81 (105)
45 3ns6_A Eukaryotic translation 97.9 2.6E-05 9E-10 59.8 7.1 72 154-249 7-78 (100)
46 1p27_B RNA-binding protein 8A; 97.9 3.7E-05 1.3E-09 58.5 7.9 66 154-249 24-89 (106)
47 2err_A Ataxin-2-binding protei 97.9 5.7E-05 1.9E-09 58.7 8.9 69 149-249 25-93 (109)
48 2d9p_A Polyadenylate-binding p 97.9 6.2E-05 2.1E-09 57.1 8.8 68 150-249 12-79 (103)
49 2x1f_A MRNA 3'-END-processing 97.9 6E-05 2.1E-09 56.6 8.6 66 154-249 3-68 (96)
50 1x5o_A RNA binding motif, sing 97.9 8.4E-05 2.9E-09 57.3 9.5 69 150-249 22-90 (114)
51 3ulh_A THO complex subunit 4; 97.9 7.5E-05 2.6E-09 56.9 9.1 70 149-249 25-94 (107)
52 2dnm_A SRP46 splicing factor; 97.9 9.5E-05 3.3E-09 56.1 9.6 70 150-249 10-79 (103)
53 2krb_A Eukaryotic translation 97.9 2E-05 7E-10 57.7 5.6 67 155-249 3-71 (81)
54 3bs9_A Nucleolysin TIA-1 isofo 97.9 0.0001 3.5E-09 53.8 9.3 68 152-249 5-72 (87)
55 2dnp_A RNA-binding protein 14; 97.9 6.4E-05 2.2E-09 55.9 8.1 62 150-249 6-67 (90)
56 3md1_A Nuclear and cytoplasmic 97.8 0.0001 3.6E-09 53.3 9.1 65 155-249 3-67 (83)
57 3s8s_A Histone-lysine N-methyl 97.8 4.9E-05 1.7E-09 60.0 7.8 67 153-249 6-72 (110)
58 2xnq_A Nuclear polyadenylated 97.8 6.2E-05 2.1E-09 57.5 8.1 62 151-249 20-81 (97)
59 2hvz_A Splicing factor, argini 97.8 3.3E-05 1.1E-09 58.5 6.4 60 155-249 2-61 (101)
60 2cqc_A Arginine/serine-rich sp 97.8 7.6E-05 2.6E-09 55.4 8.2 68 152-249 14-81 (95)
61 1x4e_A RNA binding motif, sing 97.8 2.3E-05 7.8E-10 57.4 5.2 70 150-249 2-71 (85)
62 2dgv_A HnRNP M, heterogeneous 97.8 7.6E-05 2.6E-09 55.2 8.1 68 150-249 5-72 (92)
63 1oo0_B CG8781-PA, drosophila Y 97.8 8.9E-05 3E-09 56.9 8.7 66 154-249 27-92 (110)
64 2nlw_A Eukaryotic translation 97.8 9.3E-05 3.2E-09 57.0 8.9 69 153-249 15-85 (105)
65 2kt5_A RNA and export factor-b 97.8 7.2E-05 2.5E-09 58.8 8.3 81 151-277 33-113 (124)
66 2do4_A Squamous cell carcinoma 97.8 0.00011 3.9E-09 55.4 8.9 69 150-249 14-82 (100)
67 1x5t_A Splicing factor 3B subu 97.8 6.1E-05 2.1E-09 56.1 7.3 67 153-249 5-72 (96)
68 3zzy_A Polypyrimidine tract-bi 97.8 7.1E-05 2.4E-09 62.4 8.4 64 152-249 27-90 (130)
69 3ex7_B RNA-binding protein 8A; 97.8 0.00011 3.7E-09 57.7 8.9 66 154-249 23-88 (126)
70 2dgo_A Cytotoxic granule-assoc 97.8 0.00017 5.8E-09 55.7 9.8 70 150-249 12-81 (115)
71 2jvo_A Nucleolar protein 3; nu 97.8 6.2E-05 2.1E-09 58.9 7.4 63 149-249 27-89 (108)
72 3s7r_A Heterogeneous nuclear r 97.8 6.4E-05 2.2E-09 55.2 7.1 67 148-244 6-72 (87)
73 2cpj_A Non-POU domain-containi 97.8 0.00012 4E-09 55.4 8.7 63 151-249 13-75 (99)
74 1why_A Hypothetical protein ri 97.8 0.00015 5E-09 54.6 9.2 61 153-249 17-77 (97)
75 1x4c_A Splicing factor, argini 97.8 7.4E-05 2.5E-09 57.7 7.7 63 150-249 12-74 (108)
76 1x4g_A Nucleolysin TIAR; struc 97.8 5.3E-05 1.8E-09 58.3 6.8 63 151-249 23-85 (109)
77 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.8 0.0001 3.5E-09 58.2 8.5 70 150-249 60-129 (140)
78 2cq1_A PTB-like protein L; RRM 97.8 8.3E-05 2.8E-09 58.4 7.8 60 154-249 16-75 (101)
79 2dgs_A DAZ-associated protein 97.8 0.00016 5.5E-09 54.4 9.1 69 150-249 7-75 (99)
80 2do0_A HnRNP M, heterogeneous 97.8 0.00018 6.2E-09 55.3 9.6 69 150-249 12-80 (114)
81 3sde_A Paraspeckle component 1 97.8 0.00021 7.3E-09 62.9 11.3 128 52-249 33-161 (261)
82 1x4h_A RNA-binding protein 28; 97.8 0.00012 4.1E-09 55.9 8.5 66 151-246 13-78 (111)
83 1wi8_A EIF-4B, eukaryotic tran 97.7 0.00013 4.4E-09 55.6 8.4 70 149-249 11-80 (104)
84 2a3j_A U1 small nuclear ribonu 97.7 0.00014 4.8E-09 59.4 9.1 63 154-249 30-96 (127)
85 1nu4_A U1A RNA binding domain; 97.7 0.00011 3.7E-09 54.9 7.8 64 153-249 8-75 (97)
86 2jrs_A RNA-binding protein 39; 97.7 0.00017 5.8E-09 56.2 9.2 73 147-249 20-92 (108)
87 2dgu_A Heterogeneous nuclear r 97.7 7.5E-05 2.6E-09 56.9 6.9 60 152-249 10-69 (103)
88 2cpz_A CUG triplet repeat RNA- 97.7 0.0002 6.8E-09 55.4 9.4 69 151-249 23-91 (115)
89 2la4_A Nuclear and cytoplasmic 97.7 6E-05 2E-09 57.0 6.2 61 153-249 27-87 (101)
90 3smz_A Protein raver-1, ribonu 97.7 0.00076 2.6E-08 59.1 14.1 123 61-249 38-161 (284)
91 2cq4_A RNA binding motif prote 97.7 0.00014 4.7E-09 56.3 8.3 65 154-249 26-90 (114)
92 2dis_A Unnamed protein product 97.7 9.8E-05 3.3E-09 56.4 7.2 68 153-249 8-78 (109)
93 2ytc_A PRE-mRNA-splicing facto 97.7 0.00012 3.9E-09 53.5 7.3 63 151-249 10-73 (85)
94 1wf1_A RNA-binding protein RAL 97.7 0.00015 5.3E-09 55.8 8.3 58 154-249 28-86 (110)
95 2ek1_A RNA-binding protein 12; 97.7 6.5E-05 2.2E-09 55.9 5.8 68 152-249 14-81 (95)
96 2cpx_A Hypothetical protein FL 97.7 7.1E-05 2.4E-09 57.7 6.1 71 149-249 21-91 (115)
97 1h2v_Z 20 kDa nuclear CAP bind 97.7 0.00032 1.1E-08 57.2 10.3 84 150-278 36-119 (156)
98 2la6_A RNA-binding protein FUS 97.7 0.00037 1.3E-08 52.5 9.9 71 149-249 9-87 (99)
99 2e5j_A Methenyltetrahydrofolat 97.7 0.00013 4.5E-09 55.0 7.2 65 150-249 16-80 (97)
100 2cqd_A RNA-binding region cont 97.7 0.00017 5.9E-09 55.9 8.1 71 148-249 12-82 (116)
101 2cq0_A Eukaryotic translation 97.6 0.00023 7.8E-09 53.9 8.5 70 150-249 12-81 (103)
102 1sjq_A Polypyrimidine tract-bi 97.6 8.9E-05 3.1E-09 59.6 6.5 64 150-249 13-76 (105)
103 1p1t_A Cleavage stimulation fa 97.6 0.00018 6E-09 54.4 7.6 67 153-249 8-74 (104)
104 2cpi_A CCR4-NOT transcription 97.6 5.5E-05 1.9E-09 58.9 4.7 71 152-249 14-87 (111)
105 2i2y_A Fusion protein consists 97.6 0.0002 6.8E-09 58.1 8.2 65 150-249 70-134 (150)
106 1u6f_A Tcubp1, RNA-binding pro 97.6 0.00029 9.8E-09 56.1 9.0 70 150-249 39-108 (139)
107 3beg_B Splicing factor, argini 97.6 7.9E-05 2.7E-09 58.6 5.5 61 152-249 15-75 (115)
108 2khc_A Testis-specific RNP-typ 97.6 0.00023 8E-09 55.1 7.9 70 150-249 37-106 (118)
109 2cqp_A RNA-binding protein 12; 97.6 0.0002 6.8E-09 53.7 7.2 70 150-249 12-81 (98)
110 2ad9_A Polypyrimidine tract-bi 97.6 7.9E-05 2.7E-09 60.9 5.4 60 154-249 32-91 (119)
111 2cpf_A RNA binding motif prote 97.6 0.00013 4.5E-09 54.7 6.0 71 152-249 4-74 (98)
112 2m2b_A RNA-binding protein 10; 97.5 0.0002 6.9E-09 57.2 7.3 68 150-248 20-89 (131)
113 2div_A TRNA selenocysteine ass 97.5 0.0003 1E-08 52.7 7.8 71 149-249 5-76 (99)
114 2kn4_A Immunoglobulin G-bindin 97.5 0.00034 1.1E-08 56.7 8.6 69 151-249 68-136 (158)
115 2cpe_A RNA-binding protein EWS 97.5 0.00041 1.4E-08 53.4 8.6 69 151-249 13-89 (113)
116 1s79_A Lupus LA protein; RRM, 97.5 0.00017 5.9E-09 56.3 6.3 66 152-249 10-75 (103)
117 2kxn_B Transformer-2 protein h 97.5 0.00026 9E-09 57.1 7.5 70 150-249 43-112 (129)
118 2dhg_A TRNA selenocysteine ass 97.5 0.00033 1.1E-08 53.0 7.6 68 151-249 7-75 (104)
119 1x4f_A Matrin 3; structural ge 97.5 9.9E-05 3.4E-09 59.8 4.9 74 154-275 26-99 (112)
120 1iqt_A AUF1, heterogeneous nuc 97.5 0.00019 6.3E-09 51.2 5.8 64 155-249 1-64 (75)
121 2rs2_A Musashi-1, RNA-binding 97.5 0.00034 1.2E-08 54.5 7.7 67 149-245 21-87 (109)
122 1rk8_A CG8781-PA, CG8781-PA pr 97.5 0.00053 1.8E-08 56.8 9.2 66 154-249 73-138 (165)
123 3ucg_A Polyadenylate-binding p 97.5 0.00047 1.6E-08 50.5 7.9 65 154-249 7-71 (89)
124 3md3_A Nuclear and cytoplasmic 97.5 0.00024 8.2E-09 56.1 6.8 64 155-249 2-65 (166)
125 1sjr_A Polypyrimidine tract-bi 97.5 0.00036 1.2E-08 60.4 8.4 63 153-249 46-108 (164)
126 3nmr_A Cugbp ELAV-like family 97.5 0.00027 9.1E-09 56.5 7.1 67 155-249 5-71 (175)
127 2cq2_A Hypothetical protein LO 97.5 0.00044 1.5E-08 56.4 8.4 76 154-275 26-103 (114)
128 2jvr_A Nucleolar protein 3; RN 97.5 0.00041 1.4E-08 55.5 8.0 66 150-249 25-91 (111)
129 3p5t_L Cleavage and polyadenyl 97.5 0.00025 8.5E-09 52.9 6.4 65 155-249 3-69 (90)
130 1fxl_A Paraneoplastic encephal 97.5 0.00026 9E-09 56.0 6.8 66 154-249 3-68 (167)
131 1fjc_A Nucleolin RBD2, protein 97.4 0.00017 5.7E-09 53.9 5.3 65 150-249 13-77 (96)
132 2xs2_A Deleted in azoospermia- 97.4 7E-05 2.4E-09 56.7 3.1 61 152-243 8-68 (102)
133 2bz2_A Negative elongation fac 97.4 0.00048 1.6E-08 55.1 8.1 66 146-249 32-97 (121)
134 2lea_A Serine/arginine-rich sp 97.4 0.00023 7.9E-09 57.7 6.3 67 153-249 47-113 (135)
135 1l3k_A Heterogeneous nuclear r 97.4 0.00025 8.7E-09 58.0 6.4 67 152-249 103-169 (196)
136 3tyt_A Heterogeneous nuclear r 97.4 0.00042 1.5E-08 59.9 8.2 61 154-249 5-66 (205)
137 2cpd_A Apobec-1 stimulating pr 97.4 0.0008 2.7E-08 50.7 8.6 62 150-249 12-75 (99)
138 2cqh_A IGF-II mRNA-binding pro 97.4 0.00049 1.7E-08 51.2 7.3 63 150-249 5-69 (93)
139 2f3j_A RNA and export factor b 97.4 0.00053 1.8E-08 58.4 8.4 82 151-278 86-167 (177)
140 2dnl_A Cytoplasmic polyadenyla 97.4 0.00036 1.2E-08 54.5 6.7 72 150-249 5-79 (114)
141 2e5i_A Heterogeneous nuclear r 97.4 0.00043 1.5E-08 56.8 7.3 59 156-249 28-86 (124)
142 2qfj_A FBP-interacting repress 97.4 0.00044 1.5E-08 57.4 7.4 65 155-249 30-94 (216)
143 1uaw_A Mouse-musashi-1; RNP-ty 97.3 0.00018 6.3E-09 51.3 4.1 64 155-249 2-65 (77)
144 2ghp_A U4/U6 snRNA-associated 97.3 0.0017 5.7E-08 57.1 11.1 126 52-249 52-183 (292)
145 2mss_A Protein (musashi1); RNA 97.3 0.00038 1.3E-08 49.7 5.7 64 155-249 1-64 (75)
146 2cqg_A TDP-43, TAR DNA-binding 97.3 0.00083 2.8E-08 50.8 7.9 67 148-244 10-76 (103)
147 1qm9_A Polypyrimidine tract-bi 97.3 0.00065 2.2E-08 56.3 7.9 61 154-249 4-65 (198)
148 2j76_E EIF-4B, EIF4B, eukaryot 97.3 0.00042 1.4E-08 52.8 6.2 70 149-249 15-84 (100)
149 2fc9_A NCL protein; structure 97.3 0.00064 2.2E-08 51.3 7.1 65 151-249 13-77 (101)
150 4f02_A Polyadenylate-binding p 97.3 0.00078 2.7E-08 57.4 8.3 75 145-249 7-81 (213)
151 1b7f_A Protein (SXL-lethal pro 97.3 0.0005 1.7E-08 54.7 6.6 66 154-249 4-69 (168)
152 2pe8_A Splicing factor 45; RRM 97.3 0.0011 3.9E-08 52.1 8.4 84 153-275 8-91 (105)
153 2dgw_A Probable RNA-binding pr 97.2 0.0013 4.6E-08 48.6 8.2 68 149-249 6-73 (91)
154 1x4b_A Heterogeneous nuclear r 97.2 0.00046 1.6E-08 53.5 5.8 66 153-249 27-92 (116)
155 1x5p_A Negative elongation fac 97.2 0.0012 4.1E-08 49.6 8.0 58 154-249 16-73 (97)
156 2adc_A Polypyrimidine tract-bi 97.2 0.00065 2.2E-08 58.5 6.9 61 154-249 35-96 (229)
157 1wel_A RNA-binding protein 12; 97.2 0.0004 1.4E-08 54.8 5.1 70 149-249 21-90 (124)
158 2ki2_A SS-DNA binding protein 97.2 0.00021 7.1E-09 52.8 3.2 64 155-249 3-66 (90)
159 3egn_A RNA-binding protein 40; 97.2 0.00068 2.3E-08 54.5 6.5 77 147-249 39-116 (143)
160 2jwn_A Embryonic polyadenylate 97.2 0.00093 3.2E-08 52.2 7.1 66 153-249 36-101 (124)
161 1wg1_A KIAA1579 protein, homol 97.2 0.00061 2.1E-08 50.5 5.8 60 153-249 5-64 (88)
162 2cjk_A Nuclear polyadenylated 97.2 0.00067 2.3E-08 54.1 6.3 66 154-249 4-72 (167)
163 4f02_A Polyadenylate-binding p 97.2 0.001 3.5E-08 56.7 7.8 135 52-249 26-167 (213)
164 2cpy_A RNA-binding protein 12; 97.1 0.0012 4.3E-08 51.3 7.4 67 151-249 13-80 (114)
165 2dng_A Eukaryotic translation 97.1 0.0018 6.1E-08 49.1 8.0 69 149-249 11-79 (103)
166 2cjk_A Nuclear polyadenylated 97.1 0.0011 3.7E-08 52.8 6.8 66 153-249 87-152 (167)
167 3pgw_S U1-70K; protein-RNA com 97.1 0.0019 6.4E-08 62.6 9.4 69 151-249 100-168 (437)
168 3v4m_A Splicing factor U2AF 65 97.1 0.0015 5E-08 51.4 7.1 65 177-274 29-93 (105)
169 2dh8_A DAZ-associated protein 97.1 0.0018 6.2E-08 49.1 7.4 69 150-249 13-81 (105)
170 3pgw_A U1-A; protein-RNA compl 97.0 0.0022 7.4E-08 56.1 8.8 64 153-249 9-76 (282)
171 3n9u_C Cleavage and polyadenyl 97.0 0.0025 8.5E-08 53.2 8.6 69 151-249 53-123 (156)
172 2e5g_A U6 snRNA-specific termi 97.0 0.0013 4.3E-08 49.2 6.0 63 151-249 6-68 (94)
173 2hzc_A Splicing factor U2AF 65 97.0 0.00099 3.4E-08 48.5 5.1 63 150-249 3-76 (87)
174 3q2s_C Cleavage and polyadenyl 97.0 0.0018 6.3E-08 57.1 7.8 68 152-249 67-136 (229)
175 2lmi_A GRSF-1, G-rich sequence 97.0 0.0016 5.6E-08 50.1 6.5 69 149-249 7-78 (107)
176 2fc8_A NCL protein; structure 97.0 0.0032 1.1E-07 47.3 8.0 67 150-249 12-78 (102)
177 2db1_A Heterogeneous nuclear r 97.0 0.0029 1E-07 49.9 8.0 74 144-249 8-84 (118)
178 1fj7_A Nucleolin RBD1, protein 97.0 0.0014 4.8E-08 49.4 5.9 66 152-249 16-81 (101)
179 1wg5_A Heterogeneous nuclear r 97.0 0.0024 8.1E-08 49.0 7.3 68 150-249 12-80 (104)
180 2diu_A KIAA0430 protein; struc 96.9 0.0017 5.8E-08 52.3 6.6 58 154-249 9-70 (96)
181 3d2w_A TAR DNA-binding protein 96.9 0.0044 1.5E-07 46.6 8.5 61 150-249 8-68 (89)
182 1wf0_A TDP-43, TAR DNA-binding 96.9 0.0026 8.8E-08 46.9 7.1 60 151-249 3-62 (88)
183 3ue2_A Poly(U)-binding-splicin 96.9 0.003 1E-07 51.0 7.6 85 153-275 20-106 (118)
184 3u1l_A PRE-mRNA-splicing facto 96.7 0.0029 1E-07 57.5 7.1 70 153-249 134-203 (240)
185 1l3k_A Heterogeneous nuclear r 96.7 0.0043 1.5E-07 50.6 7.3 67 152-249 12-78 (196)
186 2voo_A Lupus LA protein; RNA-b 96.6 0.0023 7.9E-08 55.0 5.5 61 154-245 110-170 (193)
187 2d9o_A DNAJ (HSP40) homolog, s 96.6 0.0025 8.5E-08 50.2 5.2 60 163-247 15-76 (100)
188 3s6e_A RNA-binding protein 39; 96.6 0.0043 1.5E-07 49.9 6.7 59 178-275 32-90 (114)
189 2lcw_A RNA-binding protein FUS 95.6 0.00033 1.1E-08 54.4 0.0 67 153-249 7-81 (116)
190 2wbr_A GW182, gawky, LD47780P; 96.6 0.0033 1.1E-07 49.9 5.6 70 155-275 9-78 (89)
191 1jmt_A Splicing factor U2AF 35 96.5 0.0073 2.5E-07 47.2 7.2 49 180-249 43-92 (104)
192 2dit_A HIV TAT specific factor 96.5 0.0046 1.6E-07 48.1 6.0 67 153-249 15-88 (112)
193 3tht_A Alkylated DNA repair pr 96.5 0.012 4.1E-07 56.1 9.7 81 151-275 16-96 (345)
194 3sde_A Paraspeckle component 1 96.4 0.0063 2.2E-07 53.5 6.7 60 154-249 23-82 (261)
195 1wez_A HnRNP H', FTP-3, hetero 96.3 0.0063 2.2E-07 46.9 5.6 67 150-249 12-78 (102)
196 1fje_B Nucleolin RBD12, protei 96.0 0.0086 3E-07 48.2 5.1 75 143-249 3-77 (175)
197 1owx_A Lupus LA protein, SS-B, 95.9 0.015 5E-07 48.1 6.4 60 155-249 20-80 (121)
198 2hgl_A HNRPF protein, heteroge 95.9 0.02 6.8E-07 47.2 7.0 68 150-249 41-111 (136)
199 2hgn_A Heterogeneous nuclear r 95.6 0.012 4.1E-07 48.7 4.8 66 151-249 44-109 (139)
200 2yh0_A Splicing factor U2AF 65 95.4 0.011 3.7E-07 48.3 3.8 71 153-249 4-74 (198)
201 2dnr_A Synaptojanin-1; RRM dom 95.2 0.017 5.9E-07 46.0 4.3 74 155-278 9-87 (91)
202 2dnn_A RNA-binding protein 12; 95.2 0.032 1.1E-06 44.1 5.7 63 154-249 17-79 (109)
203 2dha_A FLJ20171 protein; RRM d 95.2 0.022 7.5E-07 46.1 4.8 66 150-247 20-89 (123)
204 2j8a_A Histone-lysine N-methyl 95.0 0.052 1.8E-06 46.2 6.7 87 153-277 2-95 (136)
205 2g4b_A Splicing factor U2AF 65 94.6 0.043 1.5E-06 43.7 5.2 70 154-249 5-74 (172)
206 3dxb_A Thioredoxin N-terminall 94.5 0.084 2.9E-06 45.0 6.9 95 130-249 105-199 (222)
207 2hgm_A HNRPF protein, heteroge 93.7 0.2 6.7E-06 40.9 7.4 66 151-249 40-107 (126)
208 1ufw_A Synaptojanin 2; RNP dom 93.2 0.069 2.3E-06 42.9 3.7 62 153-249 14-81 (95)
209 4f25_A Polyadenylate-binding p 49.9 12 0.00042 28.5 3.2 89 52-165 16-109 (115)
210 3s6e_A RNA-binding protein 39; 48.3 59 0.002 25.5 7.0 75 57-146 29-107 (114)
211 2lkz_A RNA-binding protein 5; 26.8 57 0.0019 24.5 3.6 50 60-113 24-85 (95)
212 3qwe_A GMIP, GEM-interacting p 22.3 16 0.00055 34.0 -0.4 15 228-242 260-274 (279)
213 1x4c_A Splicing factor, argini 22.2 2E+02 0.0068 21.1 5.9 65 52-123 26-91 (108)
214 4hsp_A Hypothetical protein; P 22.1 17 0.00058 31.2 -0.3 23 97-119 46-68 (150)
No 1
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.40 E-value=2.8e-06 Score=68.16 Aligned_cols=138 Identities=14% Similarity=0.212 Sum_probs=91.0
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeec--CC-------cceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEee
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTK--ST-------LEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRAT 122 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~k--sT-------lefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~ 122 (305)
.++.=+|.+-+...= ....+++.+ .| --||.|+ +....+..++.|+|..+. .|....+++..+
T Consensus 14 ~~te~~l~~~F~~~G---~i~~v~i~~~~~~~~~~~~g~afV~f~----~~~~A~~A~~~l~~~~~~-~~~~~~~~~~~~ 85 (175)
T 3nmr_A 14 TWSEKDLRELFEQYG---AVYEINVLRDRSQNPPQSKGCCFVTFY----TRKAALEAQNALHNMKVL-PGMHHPIQMKPA 85 (175)
T ss_dssp TCCHHHHHHHHHTTS---CEEEEEEEEECSSSSCEEEEEEEEEES----SHHHHHHHHHHHTTTCCC-TTCSSCCEEEEC
T ss_pred CCCHHHHHHHHHhCC---CEEEEEEEecCCCCCCCcceEEEEEEC----CHHHHHHHHHHhcCcEEc-cCCccceEEccc
Confidence 466666666555432 233444432 22 2378884 445567888889998762 344445555543
Q ss_pred ccCCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccc
Q psy6597 123 EAKPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYR 202 (305)
Q Consensus 123 Eak~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr 202 (305)
..+.. .....-+|++.|||-.+ ++.-|+.+|++||.|..+.|+.. +
T Consensus 86 ~~~~~---------------------~~~~~~~l~v~nl~~~~----------t~~~l~~~F~~~G~i~~v~~~~~-~-- 131 (175)
T 3nmr_A 86 DSEKN---------------------NAVEDRKLFIGMISKKC----------TENDIRVMFSSFGQIEECRILRG-P-- 131 (175)
T ss_dssp GGGCC---------------------SCGGGSEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEEC-T--
T ss_pred ccccc---------------------ccCCCCeEEEcCCCCcC----------CHHHHHHHHHhCCCEEEEEEEEC-C--
Confidence 32110 11234589999998543 67889999999999999999542 1
Q ss_pred cccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 203 AQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 203 ~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.+ .-.--|||+|. ...+-.+|+++|.|..
T Consensus 132 ------~g---------~~~g~afV~f~---~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 132 ------DG---------LSRGCAFVTFT---TRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp ------TS---------CEEEEEEEEES---SHHHHHHHHHHHTTSC
T ss_pred ------CC---------CEEEEEEEEEC---CHHHHHHHHHHhcCCc
Confidence 01 11335899999 9999999999999999
No 2
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.31 E-value=1e-05 Score=64.60 Aligned_cols=135 Identities=15% Similarity=0.236 Sum_probs=90.0
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeecC--C-----cceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeecc
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTKS--T-----LEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEA 124 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~ks--T-----lefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Ea 124 (305)
.++.=+|.+-+...= ....+++.+. | --||.|+ +....+..++.|||..+ .|- .|+|..+..
T Consensus 14 ~~~~~~l~~~f~~~G---~i~~v~i~~~~~~~~~~g~afV~f~----~~~~A~~a~~~l~~~~~--~g~--~l~v~~~~~ 82 (168)
T 1b7f_A 14 DMTDRELYALFRAIG---PINTCRIMRDYKTGYSYGYAFVDFT----SEMDSQRAIKVLNGITV--RNK--RLKVSYARP 82 (168)
T ss_dssp TCCHHHHHHHHHTTS---CEEEEECCEETTTTEECSEEEEEES----SHHHHHHHHHHHTTCEE--TTE--ECEEEECCC
T ss_pred CCCHHHHHHHHHhcC---CeeEEEEEEeCCCCccceEEEEEEC----CHHHHHHHHHhcCCCEe--CCc--EEEEEecCC
Confidence 456656655555432 2334454432 2 3578885 44556788888999876 443 455544322
Q ss_pred CCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccc
Q psy6597 125 KPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQ 204 (305)
Q Consensus 125 k~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~ 204 (305)
+. ......+|++.|||..+ +++.|+.+|++||.|..+.|+....
T Consensus 83 ~~----------------------~~~~~~~l~v~nl~~~~----------t~~~l~~~f~~~G~i~~~~i~~~~~---- 126 (168)
T 1b7f_A 83 GG----------------------ESIKDTNLYVTNLPRTI----------TDDQLDTIFGKYGSIVQKNILRDKL---- 126 (168)
T ss_dssp CS----------------------STTTTCEEEEESCCTTC----------CHHHHHHHHTSSSCEEEEEEEECTT----
T ss_pred Cc----------------------ccCCCCCEEEeCCCCCC----------CHHHHHHhhhcCCcEEEEEEEEcCC----
Confidence 10 12345799999999653 6788999999999999999854211
Q ss_pred cccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 205 MKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 205 m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.+ .-.--|||+|. ...+-.+|++.|.|..
T Consensus 127 -----~~--------~~~g~afV~f~---~~~~A~~A~~~l~g~~ 155 (168)
T 1b7f_A 127 -----TG--------RPRGVAFVRYN---KREEAQEAISALNNVI 155 (168)
T ss_dssp -----TC--------CEEEEEEEEES---SHHHHHHHHHHHTTCC
T ss_pred -----CC--------CcceEEEEEEC---CHHHHHHHHHHhcCCE
Confidence 11 11335999999 9999999999999999
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.6e-05 Score=63.04 Aligned_cols=137 Identities=12% Similarity=0.176 Sum_probs=89.7
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeecCC------cceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccC
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTKST------LEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAK 125 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~ksT------lefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak 125 (305)
.++.=+|.+-+...= ....+++.... --||.|+ +....+..++.|+|..+ .| ..++|..+..+
T Consensus 11 ~~t~~~l~~~f~~~G---~i~~v~i~~~~~~~~~g~afV~f~----~~~~a~~A~~~l~~~~~--~g--~~i~v~~~~~~ 79 (166)
T 3md3_A 11 AITEDILKQYFQVGG---PIANIKIMIDKNNKNVNYAFVEYH----QSHDANIALQTLNGKQI--EN--NIVKINWAFQS 79 (166)
T ss_dssp TCCHHHHHHHHGGGS---CEEEEEEECCCC-CCEEEEEEEES----SHHHHHHHHHHHTTCEE--TT--EECEEEECCCC
T ss_pred cCCHHHHHHHHHhcC---CeEEEEEEECCCCCCCCEEEEEeC----CHHHHHHHHHHcCCCcc--CC--CeeEEEEcCCC
Confidence 345545555444332 23445553222 2478884 44456788889999987 33 34555554322
Q ss_pred CCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCcccccc
Q psy6597 126 PDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQM 205 (305)
Q Consensus 126 ~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m 205 (305)
.. ......-+|++.|||..+ ++.-|+.+|+.||.|..+.|+...
T Consensus 80 ~~--------------------~~~~~~~~l~v~nl~~~~----------t~~~l~~~f~~~G~i~~~~i~~~~------ 123 (166)
T 3md3_A 80 QQ--------------------SSSDDTFNLFVGDLNVNV----------DDETLRNAFKDFPSYLSGHVMWDM------ 123 (166)
T ss_dssp CC--------------------CCCTTCEEEEEESCCTTC----------CHHHHHHHHTTSTTEEEEEEEECT------
T ss_pred CC--------------------CCCCCCceEEECCCCCCC----------CHHHHHHHHhccCCeeEEEEEecC------
Confidence 10 123445689999999554 678899999999999999995421
Q ss_pred ccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 206 KPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 206 ~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
..+ .-.--|||+|. ...+-.+|++.|.|..
T Consensus 124 ---~~~--------~~~g~afV~f~---~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 124 ---QTG--------SSRGYGFVSFT---SQDDAQNAMDSMQGQD 153 (166)
T ss_dssp ---TTC--------CEEEEEEEEES---CHHHHHHHHHHHTTCE
T ss_pred ---CCC--------CcceEEEEEeC---CHHHHHHHHHHhCCCc
Confidence 011 12335899999 9999999999999998
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.22 E-value=2e-05 Score=62.52 Aligned_cols=135 Identities=16% Similarity=0.234 Sum_probs=89.1
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeecCC-------cceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeecc
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTKST-------LEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEA 124 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~ksT-------lefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Ea 124 (305)
.++.=+|.+-+...= ....+++.+.- --||.|+ +....+..++.|||..+ .| ..|+|..+..
T Consensus 13 ~~~~~~l~~~f~~~G---~i~~v~~~~~~~~~~~~g~afV~f~----~~~~A~~a~~~l~~~~~--~g--~~l~v~~~~~ 81 (167)
T 1fxl_A 13 NMTQEEFRSLFGSIG---EIESCKLVRDKITGQSLGYGFVNYI----DPKDAEKAINTLNGLRL--QT--KTIKVSYARP 81 (167)
T ss_dssp TCCHHHHHHHHHTTS---CEEEEEEEECTTTCCEEEEEEEEES----SHHHHHHHHHHHTTCEE--TT--EECEEEECCC
T ss_pred CCCHHHHHHHHHhcC---CeEEEEEEeCCCCCcceeEEEEEEC----CHHHHHHHHHHcCCCcc--CC--ceEEEEecCC
Confidence 445555555444432 23455554332 2378884 44557788888999766 34 3455544322
Q ss_pred CCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccc
Q psy6597 125 KPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQ 204 (305)
Q Consensus 125 k~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~ 204 (305)
+. ......+|++.|||-.+ ++..|+.+|++||.|..+.|+....
T Consensus 82 ~~----------------------~~~~~~~l~v~nl~~~~----------t~~~l~~~f~~~G~i~~~~i~~~~~---- 125 (167)
T 1fxl_A 82 SS----------------------ASIRDANLYVSGLPKTM----------TQKELEQLFSQYGRIITSRILVDQV---- 125 (167)
T ss_dssp CC----------------------GGGTTCEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECTT----
T ss_pred Cc----------------------ccCCCCcEEECCCCCcC----------CHHHHHHHHHhcCCEeEEEEEecCC----
Confidence 10 11235689999999654 6788999999999999999964211
Q ss_pred cccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 205 MKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 205 m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.+ .-.--|||+|. ...+-.+|++.|.|+.
T Consensus 126 -----~g--------~~~g~afV~f~---~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 126 -----TG--------VSRGVGFIRFD---KRIEAEEAIKGLNGQK 154 (167)
T ss_dssp -----TC--------CEEEEEEEEES---SHHHHHHHHHHHTTCC
T ss_pred -----CC--------CccceEEEEeC---CHHHHHHHHHHhcCCc
Confidence 11 11335899999 9999999999999999
No 5
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.22 E-value=4.1e-05 Score=62.86 Aligned_cols=157 Identities=10% Similarity=0.220 Sum_probs=92.7
Q ss_pred cCchHHHHHHHHHhc---C----CC-CcceeeeecC-CcceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEee
Q psy6597 52 SLSNYEVIEKIKYWA---Q----PE-EFSSLKVTKS-TLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRAT 122 (305)
Q Consensus 52 sISnWEVmEkLk~~i---~----P~-~fs~lkV~ks-TlefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~ 122 (305)
.++.=+|.+-+...- . |. ....+++.++ ---||.|+- ....+..+ .|||..| .|- .|+|.-+
T Consensus 15 ~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~----~~~A~~Al-~l~g~~~--~g~--~i~v~~~ 85 (198)
T 2yh0_A 15 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRS----VDETTQAM-AFDGIIF--QGQ--SLKIRRP 85 (198)
T ss_dssp TCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESC----SHHHHHHG-GGTTEEE--TTE--EEEEECC
T ss_pred CCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCC----HHHHHHHH-HhcCCEE--cCc--eEEEeCC
Confidence 566667777766651 1 11 2333444333 233788853 34455666 7999774 454 3444433
Q ss_pred ccCCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccc
Q psy6597 123 EAKPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYR 202 (305)
Q Consensus 123 Eak~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr 202 (305)
..+..-+....-... ...+.........+-||++.|||-.+ ++.-|+.+|++||.|..+.|+..-
T Consensus 86 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~v~~~~~~~~~--- 150 (198)
T 2yh0_A 86 HDYQPLPGMSENPSV--YVPGVVSTVVPDSAHKLFIGGLPNYL----------NDDQVKELLTSFGPLKAFNLVKDS--- 150 (198)
T ss_dssp CCCCCCCCSSSCSSC--CCTTSSCCCSSCCCCEEEEECCCTTC----------CHHHHHHHHHTBSCEEEEEEEECT---
T ss_pred CCCCCCCCCcCCCcC--CCCCCccCCCCCCCCEEEEeCCCCCC----------CHHHHHHHHHHcCCccEEEEeecC---
Confidence 222111111111000 00011122233567899999999755 578899999999999999985311
Q ss_pred cccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 203 AQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 203 ~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
..+ .-.--|||+|. ...+-.+|++.|.|..
T Consensus 151 ------~~~--------~~~g~afV~f~---~~~~a~~A~~~l~g~~ 180 (198)
T 2yh0_A 151 ------ATG--------LSKGYAFCEYV---DINVTDQAIAGLNGMQ 180 (198)
T ss_dssp ------TTC--------SEEEEEEEEES---SSSHHHHHHHHHTTCE
T ss_pred ------CCC--------CcceEEEEEEC---CHHHHHHHHHHcCCCE
Confidence 011 11335999999 9999999999999988
No 6
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.13 E-value=3.5e-05 Score=61.90 Aligned_cols=137 Identities=11% Similarity=0.266 Sum_probs=89.3
Q ss_pred cCchHHHHHHHHHhc---C----C-CCcceeeeecC-CcceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEee
Q psy6597 52 SLSNYEVIEKIKYWA---Q----P-EEFSSLKVTKS-TLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRAT 122 (305)
Q Consensus 52 sISnWEVmEkLk~~i---~----P-~~fs~lkV~ks-TlefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~ 122 (305)
.++.=+|.+-+...- - | .....+++.++ ---||.|+ +....+..+ .|||..+ .|- .++|..
T Consensus 15 ~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~----~~~~A~~A~-~~~~~~~--~g~--~i~v~~- 84 (172)
T 2g4b_A 15 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFR----SVDETTQAM-AFDGIIF--QGQ--SLKIRR- 84 (172)
T ss_dssp TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEES----SHHHHHHHG-GGTTCEE--TTE--ECEEEC-
T ss_pred ccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeC----CHHHHHHHH-HhCCcEe--cCc--eeeecC-
Confidence 566667777776651 1 1 13444555443 22378884 334455666 7999875 454 344432
Q ss_pred ccCCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccc
Q psy6597 123 EAKPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYR 202 (305)
Q Consensus 123 Eak~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr 202 (305)
++.. .+...+.+|++.|||-.+ ++.-|+.+|++||+|..+.|+...
T Consensus 85 -~~~~--------------------~~~~~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~--- 130 (172)
T 2g4b_A 85 -PHDY--------------------QPLPGAHKLFIGGLPNYL----------NDDQVKELLTSFGPLKAFNLVKDS--- 130 (172)
T ss_dssp -CSSC--------------------CCCTTTTCEEEECCCTTC----------CHHHHHHHHHTTSCEEEEEEEECT---
T ss_pred -Cccc--------------------CCCCCCCEEEEEcCCCcC----------CHHHHHHHHHhcCCceEEEEEecC---
Confidence 2110 122347899999999754 588899999999999999995421
Q ss_pred cccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 203 AQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 203 ~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
..+ .-.--|||+|. ...+-.+|++.|.|..
T Consensus 131 ------~~g--------~~~g~afV~f~---~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 131 ------ATG--------LSKGYAFCEYV---DINVTDQAIAGLNGMQ 160 (172)
T ss_dssp ------TTC--------SEEEEEEEEES---STTHHHHHHHHHTTCE
T ss_pred ------CCC--------CcceEEEEEeC---CHHHHHHHHHHcCCCE
Confidence 011 11224999999 9999999999999988
No 7
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.11 E-value=1.2e-05 Score=62.51 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=61.1
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCc--ceeecCCCCCccccccccCCCCCccccCCCceeEEEEE
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGD--IREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQL 227 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~--IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayV 227 (305)
.+.=|||+++|||-.+ +|+-|+.+|++||+ |.+|-|+. |+. + + ..++ =|||
T Consensus 6 ~~~m~tlfV~nL~~~~----------tee~L~~~F~~~G~i~v~~v~i~~-d~~----t--g-~srG---------~aFV 58 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHT----------VVDSIMTALSPYASLAVNNIRLIK-DKQ----T--Q-QNRG---------FAFV 58 (95)
T ss_dssp SCCCCEEEEESCCTTC----------CHHHHHHHSTTTCCCCGGGEECCC-CSS----S--S-SCSS---------EEEE
T ss_pred CCccCEEEEeCCCCcC----------CHHHHHHHHHhhCCccEEEEEEEe-cCC----C--C-CCce---------EeEE
Confidence 4667999999999764 78889999999996 56666653 111 0 1 1122 3899
Q ss_pred eecCCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEE
Q psy6597 228 GKLPGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYV 275 (305)
Q Consensus 228 Qy~~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~ 275 (305)
+|. ...+-.+|+++|.|.. .-++ -|| +.+.|+|.
T Consensus 59 ~f~---~~~~A~~Ai~~lng~~----~~~~-i~G------r~i~V~~A 92 (95)
T 2lkz_A 59 QLS---SAMDASQLLQILQSLH----PPLK-IDG------KTIGVDFA 92 (95)
T ss_dssp ECS---SSHHHHHHHHHHHSSS----SCEE-ETT------EEEEEEEC
T ss_pred EEC---CHHHHHHHHHHhcCCC----CCce-ECC------EEEEEEEc
Confidence 999 9999999999999985 3222 256 47777763
No 8
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.11 E-value=9.6e-06 Score=59.33 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=55.3
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
.+|-||++.|||..+ ++.-|+.+|+.||+|..+.|+....-. + .-.--|||+|.
T Consensus 2 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~~~i~~~~~~~-------~---------~~~g~afV~f~ 55 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNV----------TKDHIMEIFSTYGKIKMIDMPVERMHP-------H---------LSKGYAYVEFE 55 (88)
T ss_dssp CCCCEEEEECCCTTC----------CHHHHHHHHHTTSCEEEEECCEETTEE-------E---------EECSEEEEEES
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEEeCCCCC-------C---------CCCcEEEEEEe
Confidence 467899999999654 678899999999999999996522100 0 01224899999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 56 ---~~~~a~~A~~~l~g~~ 71 (88)
T 4a8x_A 56 ---NPDEAEKALKHMDGGQ 71 (88)
T ss_dssp ---SHHHHHHHHHHHTTCE
T ss_pred ---cHHHHHHHHHHcCCCe
Confidence 9999999999999988
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=2.4e-05 Score=58.32 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=55.4
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ ++..|+.+|+.||+|..|.|+.... . +. -.--|||+|
T Consensus 2 ~~~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~-----~---~~---------~~g~afV~f 54 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNI----------TEDMLRGIFEPFGKIDNIVLMKDSD-----T---GR---------SKGYGFITF 54 (95)
T ss_dssp CSCCCEEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEEECCSS-----S---CC---------CCSEEEEEE
T ss_pred CCCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCEeEEEEeecCC-----C---Cc---------eeeEEEEEE
Confidence 4567899999999654 6788999999999999999963210 0 11 112489999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 55 ~---~~~~a~~A~~~l~g~~ 71 (95)
T 2dnz_A 55 S---DSECARRALEQLNGFE 71 (95)
T ss_dssp S---CHHHHHHHHHHHTTCC
T ss_pred C---CHHHHHHHHHHhCCCe
Confidence 9 9999999999999988
No 10
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=2e-05 Score=58.61 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=54.2
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
..+-||++.|||..+ +++-|+.+|++||+|.+|.|+....- +...+ -|||+|.
T Consensus 14 ~~~~~l~V~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~~--------~~~~g---------~afV~f~ 66 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSL----------TNNDLYRIFSKYGKVVKVTIMKDKDT--------RKSKG---------VAFILFL 66 (94)
T ss_dssp CCTTSEEEESCCTTS----------CHHHHHHHTTTTSCEEEEEECCCSSS--------CCCTT---------CEEEEES
T ss_pred CCCCEEEEECCCCCC----------CHHHHHHHHHhcCCeEEEEEEeCCCC--------CCccc---------EEEEEEC
Confidence 445699999999543 67789999999999999999652211 11121 2899999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 67 ---~~~~A~~A~~~l~g~~ 82 (94)
T 2e5h_A 67 ---DKDSAQNCTRAINNKQ 82 (94)
T ss_dssp ---CHHHHHHHHHHTTTEE
T ss_pred ---CHHHHHHHHHHcCCCe
Confidence 9999999999999988
No 11
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.07 E-value=1e-05 Score=62.57 Aligned_cols=66 Identities=12% Similarity=0.287 Sum_probs=52.7
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-+|++.|||-.+ +|+-|+.+|++||+|..|.|+.+- .++ .-.--|||+|.
T Consensus 20 t~lfV~nLp~~~----------te~~L~~~F~~~G~I~~v~i~~d~---------~tg--------~~kG~afV~f~--- 69 (99)
T 4fxv_A 20 TNLIVNYLPQNM----------TQDELRSLFSSIGEVESAKLIRDK---------VAG--------HSLGYGFVNYV--- 69 (99)
T ss_dssp SEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEEEEECS---------SSC--------CEEEEEEEEES---
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEeEeeecC---------CCC--------cccccEEEEEC---
Confidence 479999999654 688899999999999999996410 111 01123899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 70 ~~~~A~~Ai~~lng~~ 85 (99)
T 4fxv_A 70 TAKDAERAINTLNGLR 85 (99)
T ss_dssp SHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHhCCCE
Confidence 9999999999999998
No 12
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.05 E-value=2.4e-05 Score=60.57 Aligned_cols=67 Identities=24% Similarity=0.323 Sum_probs=54.3
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
.+..-||++.|||..+ ++..|+.+|+.||.|..|.|+.. +.+ .+ -|||+|
T Consensus 5 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~v~i~~~----------~~~-~g---------~afV~f 54 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKI----------TAEEMYDIFGKYGPIRQIRVGNT----------PET-RG---------TAYVVY 54 (115)
T ss_dssp TTCCSEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEEEECS----------TTT-TT---------CEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEeeC----------CCC-Cc---------EEEEEE
Confidence 3455799999999654 67789999999999999999631 111 21 289999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 55 ~---~~~~A~~A~~~l~g~~ 71 (115)
T 3lqv_A 55 E---DIFDAKNAVDHLSGFN 71 (115)
T ss_dssp S---SHHHHHHHHHHHTTCB
T ss_pred C---CHHHHHHHHHHcCCCE
Confidence 9 9999999999999998
No 13
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.05 E-value=2.8e-05 Score=59.10 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=55.8
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ ++..|+.+|+.||+|..|.|+.. + + + .-.--|||+|
T Consensus 12 ~~~~~~l~v~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~-~-----~--g----------~~~g~afV~f 63 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQ----------SEEDVLRLFQPFGVIDECTVLRG-P-----D--G----------SSKGCAFVKF 63 (105)
T ss_dssp CCCCCEEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEEEEC-S-----S--S----------CEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEEC-C-----C--C----------CcCcEEEEEe
Confidence 4557899999999665 67889999999999999999542 1 0 1 1123589999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|+++|.|..
T Consensus 64 ~---~~~~A~~Ai~~l~g~~ 80 (105)
T 2dnh_A 64 S---SHTEAQAAIHALHGSQ 80 (105)
T ss_dssp S---SHHHHHHHHHHHSSCC
T ss_pred C---CHHHHHHHHHHHcCCc
Confidence 9 9999999999999998
No 14
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.05 E-value=9.5e-06 Score=63.75 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=52.6
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-+|++.|||..| +|+.|+.+|+.||+|..|.|+.. + ++ .++ =|||+|.
T Consensus 6 ~~lfV~nLp~~~----------te~~L~~~F~~~G~v~~v~i~~d-~--------~~-~kg---------~afV~f~--- 53 (115)
T 4f25_A 6 GNIFIKNLDKSI----------DNKALYDTFSAFGNILSCKVVCD-E--------NG-SKG---------YGFVHFE--- 53 (115)
T ss_dssp CEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEEE-T--------TE-EEE---------EEEEEES---
T ss_pred CEEEECCCCCCC----------CHHHHHHHHhccCCEEEEEEeec-C--------CC-CCc---------eEEEEEC---
Confidence 589999999766 57889999999999999999641 1 11 021 2899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 54 ~~~~A~~Ai~~l~~~~ 69 (115)
T 4f25_A 54 TQEAAERAIEKMNGML 69 (115)
T ss_dssp CHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHcCCCE
Confidence 9999999999999988
No 15
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=2.2e-05 Score=61.52 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=51.4
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
.||++.|||... ++.-|+.+|++||.|..|.|+. . ++| |||+|.
T Consensus 11 ~~l~V~nLp~~~----------te~~L~~~F~~~G~i~~v~i~~-----------~---~g~---------afV~f~--- 54 (111)
T 1whx_A 11 TVILAKNLPAGT----------LAAEIQETFSRFGSLGRVLLPE-----------G---GIT---------AIVEFL--- 54 (111)
T ss_dssp EEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEECCS-----------S---SSC---------EEEEES---
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEeC-----------C---CCE---------EEEEeC---
Confidence 489999999533 6888999999999999999962 1 111 999999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 55 ~~~~A~~Ai~~l~g~~ 70 (111)
T 1whx_A 55 EPLEARKAFRHLAYSK 70 (111)
T ss_dssp CHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHhCCCE
Confidence 9999999999999998
No 16
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.03 E-value=2.1e-05 Score=62.88 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=60.9
Q ss_pred cCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCcee
Q psy6597 143 NMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLI 222 (305)
Q Consensus 143 ~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~ 222 (305)
++|.......=-|||+.|||.. -+|+-|+.+|+.||+|.+|.|+. + ++
T Consensus 11 ~~~~~~~~~ps~~l~V~NLp~~----------~te~~L~~lF~~fG~V~~v~i~~-----------~---kg-------- 58 (100)
T 3r27_A 11 NYDDPHKTPASPVVHIRGLIDG----------VVEADLVEALQEFGPISYVVVMP-----------K---KR-------- 58 (100)
T ss_dssp ------CCCCCSEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEET-----------T---TT--------
T ss_pred cccccccCCCCcEEEEeCCCCC----------CCHHHHHHHHhccCCEEEEEEEc-----------C---CC--------
Confidence 3444444444468999999953 37888999999999999998841 1 11
Q ss_pred EEEEEeecCCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEE
Q psy6597 223 FKTQLGKLPGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTY 274 (305)
Q Consensus 223 FeayVQy~~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~ 274 (305)
-|||+|+ +-.+-.+|++.|.|.. +.. +| +.+.|+|
T Consensus 59 -~AFVef~---~~~~A~~Av~~ln~~~----~~i---~G------r~i~V~~ 93 (100)
T 3r27_A 59 -QALVEFE---DVLGACNAVNYAADNQ----IYI---AG------HPAFVNY 93 (100)
T ss_dssp -EEEEEES---SHHHHHHHHHHHHHSC----EEE---TT------EEEEEEE
T ss_pred -EEEEEEC---CHHHHHHHHHHhcCCC----cee---CC------cEEEEEe
Confidence 3899999 9999999999999988 644 35 4777776
No 17
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.02 E-value=2.8e-05 Score=56.67 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=54.1
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-||++.|||-.+ ++..|+.+|++||+|..+.|+.... . +. -.--|||+|.
T Consensus 5 ~~~~~l~V~nl~~~~----------~~~~l~~~f~~~G~i~~v~i~~~~~-----~---~~---------~~g~afV~f~ 57 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEV----------DDKVLHAAFIPFGDITDIQIPLDYE-----T---EK---------HRGFAFVEFE 57 (85)
T ss_dssp CCSSEEEEECCCTTC----------CHHHHHHHHGGGSCEEEEECCEETT-----T---TE---------ECSEEEEEES
T ss_pred CCCCEEEEECCCCCC----------CHHHHHHHHhccCCEEEEEEEECCC-----C---Cc---------cccEEEEEEC
Confidence 445799999999543 5788999999999999999964210 0 10 1123899999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 58 ---~~~~a~~A~~~l~g~~ 73 (85)
T 3mdf_A 58 ---LAEDAAAAIDNMNESE 73 (85)
T ss_dssp ---SHHHHHHHHHHHTTCE
T ss_pred ---CHHHHHHHHHHhCCCE
Confidence 9999999999999998
No 18
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.02 E-value=3e-05 Score=59.04 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=55.0
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ +++.|+.+|++||+|..|.|+.. +. . +. .+ --|||+|
T Consensus 10 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~-~~----~--g~-~~---------g~afV~f 62 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNL----------DEKDLKPLFEEFGKIYELTVLKD-RF----T--GM-HK---------GCAFLTY 62 (106)
T ss_dssp CTTCEEEEEESCCTTC----------CHHHHHHHHHHHSCCCEEECCCC-SS----S--CS-CC---------SEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEec-CC----C--CC-cc---------eEEEEEE
Confidence 4456789999999554 67889999999999999999642 11 0 11 11 1389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|+++|.|..
T Consensus 63 ~---~~~~A~~A~~~l~g~~ 79 (106)
T 2dgp_A 63 C---ERESALKAQSALHEQK 79 (106)
T ss_dssp S---SHHHHHHHHHHHTTTC
T ss_pred C---CHHHHHHHHHHhcCCc
Confidence 9 9999999999999998
No 19
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.01 E-value=1.7e-05 Score=59.08 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=53.9
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ ++..|+.+|+.||+|..|.|+ . + -|||+|
T Consensus 5 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~~~---------~-------g---------~afV~f 49 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREA----------TEQEIRSLFEQYGKVLECDII---------K-------N---------YGFVHI 49 (90)
T ss_dssp SSCCEEEEEESCCSSC----------CHHHHHHHHHTSSCEEEEEEE---------T-------T---------EEEEEE
T ss_pred CCCCeEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEE---------C-------C---------EEEEEE
Confidence 4556799999999765 678899999999999999996 1 1 289999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 50 ~---~~~~A~~A~~~l~g~~ 66 (90)
T 2dnq_A 50 E---DKTAAEDAIRNLHHYK 66 (90)
T ss_dssp S---SHHHHHHHHHHHTTCB
T ss_pred C---CHHHHHHHHHHhcCCc
Confidence 9 9999999999999988
No 20
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.01 E-value=1.6e-05 Score=59.21 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=55.2
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
.+..-||++.|||..+ ++.-|+.+|++||+|..|.|+... .+ .-.--|||+|
T Consensus 13 ~~~~~~l~v~nlp~~~----------~~~~l~~~F~~~G~i~~v~i~~~~---------~g---------~~~g~afV~f 64 (95)
T 2ywk_A 13 EEADRTVFVGNLEARV----------REEILYELFLQAGPLTKVTICKDR---------EG---------KPKSFGFVCF 64 (95)
T ss_dssp TTGGGEEEEECCCTTC----------CHHHHHHHHGGGSCEEEEEEEECT---------TS---------CEEEEEEEEE
T ss_pred CCCCCEEEEECCCCCC----------CHHHHHHHHHhcCCEEEEEEEECC---------CC---------CCceEEEEEE
Confidence 3455699999999654 577899999999999999996421 01 1133599999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 65 ~---~~~~a~~A~~~l~g~~ 81 (95)
T 2ywk_A 65 K---HPESVSYAIALLNGIR 81 (95)
T ss_dssp S---STHHHHHHHHHHTTCE
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999988
No 21
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.99 E-value=2.1e-05 Score=62.43 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=57.5
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-+||+.|||-. .-+|.-|+.+|+.||+|.+|.|+. +. +| |||+|+
T Consensus 16 ~~l~V~nLp~~---------~~te~dL~~lF~~fG~V~~v~i~~-----------~k---g~---------aFVef~--- 60 (102)
T 1x4d_A 16 RVVHIMDFQRG---------KNLRYQLLQLVEPFGVISNHLILN-----------KI---NE---------AFIEMA--- 60 (102)
T ss_dssp CEEEEESCCCS---------SSHHHHHHTTTGGGSCEEEEEECS-----------SS---SC---------EEEEES---
T ss_pred CEEEEeCCCCC---------cCCHHHHHHHHHhcCCEEEEEEEc-----------CC---CE---------EEEEEC---
Confidence 47999999951 236788999999999999999853 11 11 999999
Q ss_pred ChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEE
Q psy6597 234 DHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYV 275 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~ 275 (305)
+..+-.+|++.|.|.. +.. +| +.|.|+|.
T Consensus 61 ~~~~A~~Ai~~l~~~~----~~~---~G------r~l~V~~a 89 (102)
T 1x4d_A 61 TTEDAQAAVDYYTTTP----ALV---FG------KPVRVHLS 89 (102)
T ss_dssp SHHHHHHHHHHHHHSC----CEE---TT------EECEEEEE
T ss_pred CHHHHHHHHHHHcCCC----ceE---CC------cEEEEEEC
Confidence 9999999999999876 433 35 46777664
No 22
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.99 E-value=5.1e-05 Score=57.60 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=56.1
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
+...+-||++.|||..+ ++.-|+.+|+.||+|..|.|+... +. .+ --|||+
T Consensus 11 ~~~~~~~l~V~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~---------~~-~~---------g~afV~ 61 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRF----------RDPDLRQMFGQFGKILDVEIIFNE---------RG-SK---------GFGFVT 61 (103)
T ss_dssp CSCCCCEEEEESCCTTC----------CHHHHHHHGGGTSCEEEEEEECCT---------TT-TC---------CEEEEE
T ss_pred CCCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecC---------CC-Cc---------EEEEEE
Confidence 45667899999999654 678899999999999999996521 11 11 248999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|++.|.|..
T Consensus 62 f~---~~~~a~~A~~~l~g~~ 79 (103)
T 2cq3_A 62 FE---NSADADRAREKLHGTV 79 (103)
T ss_dssp ES---CHHHHHHHHHHHTTCE
T ss_pred EC---CHHHHHHHHHHhCCCE
Confidence 99 9999999999999988
No 23
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.99 E-value=2.3e-05 Score=59.41 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=51.8
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHH----HHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLR----RVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~----~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
.-+|++.|||..+ ++.-|+ .+|++||+|..|.|+.... + ++ | |||+
T Consensus 9 ~~~l~V~nL~~~~----------~~~~l~~~l~~~F~~~G~v~~v~i~~~~~---------~--rg--------~-afV~ 58 (96)
T 2dgx_A 9 GADVQVSNIDYRL----------SRKELQQLLQEAFARHGKVKSVELSPHTD---------Y--QL--------K-AVVQ 58 (96)
T ss_dssp CEEEEEESCCTTS----------CHHHHHHHHHHHHHHHSCEEEEEECSCCS---------T--TC--------C-EEEE
T ss_pred CCEEEEECCCCCC----------CHHHHHHHHHHhccccCcEEEEEEEeCCC---------C--Ce--------E-EEEE
Confidence 3589999999654 566677 9999999999999965210 1 21 1 9999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|+ ...+-.+|++.|.|..
T Consensus 59 f~---~~~~A~~Ai~~l~g~~ 76 (96)
T 2dgx_A 59 ME---NLQDAIGAVNSLHRYK 76 (96)
T ss_dssp ES---SHHHHHHHHHHHTTEE
T ss_pred EC---CHHHHHHHHHHhCCCE
Confidence 99 9999999999999988
No 24
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=2.7e-05 Score=58.27 Aligned_cols=67 Identities=16% Similarity=0.298 Sum_probs=54.3
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeec-CCCCCccccccccCCCCCccccCCCceeEEEEE
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVD-IPINDPYRAQMKPYISGMTLFSHAQSLIFKTQL 227 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vD-IP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayV 227 (305)
+..++-||++.|||..+ ++..|+.+|+.||+|..+. |+. | .. . +. |||
T Consensus 11 ~~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~~~~i~~-~----------~~-~------~~---afV 59 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHL----------QWEVLDSLLVQYGVVESCEQVNT-D----------SE-T------AV---VNV 59 (96)
T ss_dssp CCCSCCCEEEEEECSSS----------CHHHHHHHHHHHSCEEEEEEECC-S----------SS-S------EE---EEE
T ss_pred CCCCCCEEEEEcCCCCC----------CHHHHHHHHHhcCCeEEEEEeec-C----------CC-C------CE---EEE
Confidence 45567899999999654 6788999999999999995 643 1 11 1 01 999
Q ss_pred eecCCCChhHHHHHHHHHhCCC
Q psy6597 228 GKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 228 Qy~~~~ey~~F~kAM~aLrGmk 249 (305)
+|. ...+-.+|++.|.|..
T Consensus 60 ~f~---~~~~a~~Ai~~l~g~~ 78 (96)
T 2e44_A 60 TYS---SKDQARQALDKLNGFQ 78 (96)
T ss_dssp EES---SHHHHHHHHHHHTTCB
T ss_pred EEC---CHHHHHHHHHHhCCCE
Confidence 999 9999999999999998
No 25
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.98 E-value=3.3e-05 Score=62.59 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=82.7
Q ss_pred cCchHHHHHHHHHhcCCCC--cceeeeecC-CcceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCC
Q psy6597 52 SLSNYEVIEKIKYWAQPEE--FSSLKVTKS-TLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDF 128 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~--fs~lkV~ks-TlefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dF 128 (305)
.++.=||.+-+..+-.-.. ....+..++ ---||.|+-+ ...+..+ .|||..|. |- .|+|..+..+.
T Consensus 24 ~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~----~~a~~A~-~l~g~~~~--g~--~l~v~~~~~~~-- 92 (175)
T 1fje_B 24 NKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESA----EDLEKAL-ELTGLKVF--GN--EIKLEKPKGRD-- 92 (175)
T ss_dssp TSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSH----HHHHHHH-HGGGEEET--TE--EEEEECCCCSS--
T ss_pred CCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCH----HHHHHHH-hcCCCEeC--Ce--EEEEecCCCcc--
Confidence 5666777776666532111 111111111 1347888543 3345556 49997665 43 34554433221
Q ss_pred CCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccC
Q psy6597 129 PTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPY 208 (305)
Q Consensus 129 PtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~ 208 (305)
........+|++.|||-.+ ++.-|+.+|+.||.|+.+ + ..
T Consensus 93 ------------------~~~~~~~~~l~v~nlp~~~----------t~~~l~~~F~~~g~v~~~--~--------~~-- 132 (175)
T 1fje_B 93 ------------------SKKVRAARTLLAKNLSFNI----------TEDELKEVFEDALEIRLV--S--------QD-- 132 (175)
T ss_dssp ------------------CSTTGGGGEEEEESCCSSC----------CHHHHHHHCTTCSEEEEE--C--------SS--
T ss_pred ------------------ccccccCCEEEEeCCCCCC----------CHHHHHHHHHhcCeEEEe--c--------CC--
Confidence 1122345699999999654 578899999999999987 0 11
Q ss_pred CCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 209 ISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 209 ~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
+.+ . --|||+|. ...+-.+|++.|.|..
T Consensus 133 ~~~-~---------g~afV~f~---~~~~A~~A~~~l~g~~ 160 (175)
T 1fje_B 133 GKS-K---------GIAYIEFK---SEADAEKNLEEKQGAE 160 (175)
T ss_dssp SSC-C---------SEEEEECS---SHHHHHHHHHHHTEEE
T ss_pred CCC-c---------eEEEEEEC---CHHHHHHHHHHhCCCE
Confidence 111 1 13899999 9999999999999987
No 26
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.98 E-value=1.8e-05 Score=59.86 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=52.2
Q ss_pred CCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEE
Q psy6597 146 EMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKT 225 (305)
Q Consensus 146 E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Fea 225 (305)
++......-||++.|||.++ -++.-|+.+|++||+|..|.|+ ++ -|
T Consensus 3 ~~~~~~~~~~l~V~nlp~~~---------~t~~~l~~~F~~~G~v~~v~i~----------------~g---------~a 48 (96)
T 2kvi_A 3 EMHNIPPKSRLFIGNLPLKN---------VSKEDLFRIFSPYGHIMQINIK----------------NA---------FG 48 (96)
T ss_dssp ------CCEEEEEESSTTSC---------CCHHHHHHHHTTTCCCCEEEEE----------------TT---------EE
T ss_pred ccccCCCCCEEEEeCCCccc---------CCHHHHHHHHHhcCCEEEEEEe----------------CC---------EE
Confidence 33344556689999999742 2677899999999999999993 11 38
Q ss_pred EEeecCCCChhHHHHHHHHHhCCC
Q psy6597 226 QLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 226 yVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
||+|. ...+-.+|++.|.|..
T Consensus 49 fV~f~---~~~~A~~A~~~l~g~~ 69 (96)
T 2kvi_A 49 FIQFD---NPQSVRDAIECESQEM 69 (96)
T ss_dssp EEEES---CHHHHHHHHHHHTCSS
T ss_pred EEEEC---CHHHHHHHHHHcCCCe
Confidence 99999 9999999999999988
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.97 E-value=0.00015 Score=62.83 Aligned_cols=148 Identities=11% Similarity=0.118 Sum_probs=92.0
Q ss_pred HHHHHhcCCC-CcceeeeecCC--cceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCCCCC-Cchh
Q psy6597 60 EKIKYWAQPE-EFSSLKVTKST--LEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPTR-HDWD 135 (305)
Q Consensus 60 EkLk~~i~P~-~fs~lkV~ksT--lefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dFPtr-hdWd 135 (305)
+.|+++..+- ....++|.+.. --||.|+ +....+..++.|||..| .| ..|+|.-+..+...|.. ...+
T Consensus 20 ~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~----~~~~A~~Ai~~lng~~~--~g--~~l~v~~s~~~~~~p~~~~~~~ 91 (205)
T 3tyt_A 20 DRVFNVFCLYGNVEKVKFMKSKPGAAMVEMA----DGYAVDRAITHLNNNFM--FG--QKMNVCVSKQPAIMPGQSYGLE 91 (205)
T ss_dssp HHHHHHHTTTSCEEEEEECTTSTTCEEEEES----SHHHHHHHHHHHTTCEE--TT--EECEEEECSCSCCCCCSCCBCT
T ss_pred HHHHHHHHhcCCeEEEEEecCCCCEEEEEEC----CHHHHHHHHHHhCCCEE--CC--ceEEEEEccCCccCCCcccccc
Confidence 3567776652 35677776654 3478884 44556788899999765 45 45666655433323321 0000
Q ss_pred H------hhhhc----------ccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcc--eeecCCC
Q psy6597 136 S------YFRDA----------KNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDI--REVDIPI 197 (305)
Q Consensus 136 s------fFrda----------k~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~I--R~vDIP~ 197 (305)
. -|... .+.+. ....--|||+.|||-.+ +++.|+.+|+.||.| ..|.|..
T Consensus 92 ~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~p~~~l~v~NLp~~~----------t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 92 DGSCSYKDFSESRNNRFSTPEQAAKNR--IQHPSNVLHFFNAPLEV----------TEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp TSCBSEEECTTCTTCSCSSHHHHTTSC--CCCCCSEEEEEEECTTC----------CHHHHHHHHHHHTCCCCSEEEECS
T ss_pred cCCccccccCCCccccccCcccccccc--cCCCcceEEEeCCCCCC----------CHHHHHHHHHhcCCcceEEEEEEc
Confidence 0 00000 00000 01112479999999543 688999999999999 7777733
Q ss_pred CCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 198 NDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 198 lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.. +. -..-+||+|+ ...+-.+||..|.|..
T Consensus 160 ~~---------~~----------~~g~gfV~f~---~~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 160 GK---------SE----------RSSSGLLEWD---SKSDALETLGFLNHYQ 189 (205)
T ss_dssp CC---------SS----------SSEEEEEECS---SHHHHHHHHHHHTTCE
T ss_pred CC---------CC----------CceEEEEEeC---CHHHHHHHHHHhCCCC
Confidence 11 10 1247899999 9999999999999999
No 28
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.97 E-value=5.1e-05 Score=66.85 Aligned_cols=145 Identities=13% Similarity=0.158 Sum_probs=92.5
Q ss_pred CcCchHHHHHHHHHhcCCCCcceeeeecC------CcceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeecc
Q psy6597 51 KSLSNYEVIEKIKYWAQPEEFSSLKVTKS------TLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEA 124 (305)
Q Consensus 51 ksISnWEVmEkLk~~i~P~~fs~lkV~ks------TlefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Ea 124 (305)
..++.-+|.+-+...=. ....+++... .--||.|+ +.......++.|||..| .| ..|+|..+..
T Consensus 127 ~~~t~~~l~~~f~~~G~--~i~~v~i~~~~~~~~~g~afV~f~----~~~~a~~A~~~l~g~~~--~g--~~l~v~~a~~ 196 (292)
T 2ghp_A 127 PSYTQRNIRDLLQDINV--VALSIRLPSLRFNTSRRFAYIDVT----SKEDARYCVEKLNGLKI--EG--YTLVTKVSNP 196 (292)
T ss_dssp TTCCHHHHHHHHHHTTC--CCCEEECC-------CCEEEEECS----SHHHHHHHHHHHTTCEE--TT--EECEEEECCC
T ss_pred CCCCHHHHHHHHHHhCC--CeEEEEEEeCCCCCcceEEEEEEC----CHHHHHHHHHHhCCCEe--CC--cEEEEEECCC
Confidence 45677777777766431 2334454331 12467774 44557788889999876 56 4566655432
Q ss_pred CCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccc
Q psy6597 125 KPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQ 204 (305)
Q Consensus 125 k~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~ 204 (305)
+..-+ + ........-+|++.|||-. .-++..|+.+|+.||.|..|.|+. |+-
T Consensus 197 ~~~~~-~--------------~~~~~~~~~~l~v~nlp~~---------~~t~~~l~~~F~~~G~v~~v~i~~-~~~--- 248 (292)
T 2ghp_A 197 LEKSK-R--------------TDSATLEGREIMIRNLSTE---------LLDENLLRESFEGFGSIEKINIPA-GQK--- 248 (292)
T ss_dssp C------------------------CCTTTEEEEEEECTT---------TCCHHHHHHHHGGGSCEEEEECCS-CCC---
T ss_pred Ccccc-c--------------ccccCCCCceEEEECCCcc---------cCCHHHHHHHHhccCCeeEEEEEe-cCC---
Confidence 21100 0 0123445679999999854 136888999999999999999975 211
Q ss_pred cccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 205 MKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 205 m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.+ +. -.--|||+|. ...+-.+|+ +|.|..
T Consensus 249 ~t--g~----------~~g~afV~F~---~~~~A~~A~-~l~g~~ 277 (292)
T 2ghp_A 249 EH--SF----------NNCCAFMVFE---NKDSAERAL-QMNRSL 277 (292)
T ss_dssp -----C----------CCEEEEEEES---SHHHHHHHG-GGTTEE
T ss_pred cC--CC----------CceEEEEEeC---CHHHHHHHH-HhcCCE
Confidence 00 11 1335899999 999999999 999988
No 29
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=4.6e-05 Score=57.60 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=55.4
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ ++.-|+.+|+.||+|..|.|+.... .+. -.--|||+|
T Consensus 9 ~~~~~~l~v~nLp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~~--------~~~---------~~g~afV~f 61 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDT----------NEQSLEQVFSKYGQISEVVVVKDRE--------TQR---------SRGFGFVTF 61 (102)
T ss_dssp CCCCSEEEEESCCTTC----------CHHHHHHHHHHHSCCCEEEECCCSS--------SCS---------CCSEEEEEC
T ss_pred CCCCCEEEEECCCCCC----------CHHHHHHHHHhcCCeEEEEEEeCCC--------CCC---------cccEEEEEE
Confidence 4456799999999654 6788999999999999999965211 011 112489999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 62 ~---~~~~A~~A~~~l~g~~ 78 (102)
T 1x5s_A 62 E---NIDDAKDAMMAMNGKS 78 (102)
T ss_dssp S---SHHHHHHHHHHHTTCC
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999998
No 30
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.96 E-value=3.9e-05 Score=57.25 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=53.7
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ ++.-|+.+|+.||+|..+.|+- + -|||+|
T Consensus 7 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~v~~v~~~~-----------~--------------~afV~f 51 (92)
T 2dgt_A 7 GKASTKLHVGNISPTC----------TNQELRAKFEEYGPVIECDIVK-----------D--------------YAFVHM 51 (92)
T ss_dssp CCSSEEEEEESCCSSC----------CHHHHHHHHHTTSCCCEEEECS-----------S--------------EEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEC-----------C--------------EEEEEE
Confidence 4556789999999643 6788999999999999999951 1 599999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 52 ~---~~~~a~~A~~~l~g~~ 68 (92)
T 2dgt_A 52 E---RAEDAVEAIRGLDNTE 68 (92)
T ss_dssp S---CHHHHHHHHHHHTTEE
T ss_pred C---CHHHHHHHHHHhCCCe
Confidence 9 9999999999999988
No 31
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.96 E-value=7.2e-05 Score=65.60 Aligned_cols=139 Identities=14% Similarity=0.073 Sum_probs=92.0
Q ss_pred CcCchHHHHHHHHHhcCCCCcceeeeecC--C-----cceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeec
Q psy6597 51 KSLSNYEVIEKIKYWAQPEEFSSLKVTKS--T-----LEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATE 123 (305)
Q Consensus 51 ksISnWEVmEkLk~~i~P~~fs~lkV~ks--T-----lefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~E 123 (305)
..++.=+|.+-+...- ....+++... | .-||.|+ +.......++.|||..+ .|- .|+|..+.
T Consensus 105 ~~~t~~~l~~~f~~~G---~i~~~~i~~~~~~g~~~g~afV~f~----~~~~a~~A~~~l~~~~~--~g~--~i~v~~a~ 173 (284)
T 3smz_A 105 PSLTQQQFEELVRPFG---SLERCFLVYSERTGQSKGYGFAEYM----KKDSAARAKSDLLGKPL--GPR--TLYVHWTD 173 (284)
T ss_dssp TTCCHHHHHHHHGGGS---CEEEEEEEECTTTCCEEEEEEEEES----SHHHHHHHHHHHTTCEE--TTE--ECEEEECC
T ss_pred CcCCHHHHHHHHHhcC---CeeEEEEEeeCCCCccceEEEEEEC----CHHHHHHHHHHhCCCEe--CCc--EEEEEECC
Confidence 4555555555444432 2344455432 2 2478884 44556788889999865 453 45555543
Q ss_pred cCCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCcccc
Q psy6597 124 AKPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRA 203 (305)
Q Consensus 124 ak~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~ 203 (305)
.+. . ........+|++.|||-.| -+++-|+.+|+.||.|..+.|+...
T Consensus 174 ~~~-----------------~--~~~~~~~~~l~v~nlp~~~---------~~~~~l~~~f~~~G~i~~v~i~~~~---- 221 (284)
T 3smz_A 174 AGQ-----------------L--TPALLHSRCLCVDRLPPGF---------NDVDALCRALSAVHSPTFCQLACGQ---- 221 (284)
T ss_dssp GGG-----------------C--CTTTTSCSEEEEECCCTTC---------CCHHHHHHHTCSSSCCSEEEEEECS----
T ss_pred CCC-----------------C--CcccCCccEEEEecCCccc---------CCHHHHHHHhhCCCCeEEEEEEECC----
Confidence 210 0 1123456799999999554 3678899999999999999985421
Q ss_pred ccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 204 QMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 204 ~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
. +.-.--|||+|. ...+-.+|++.|.|..
T Consensus 222 -----~---------g~~~g~afV~f~---~~~~A~~A~~~l~g~~ 250 (284)
T 3smz_A 222 -----D---------GQLKGFAVLEYE---TAEMAEEAQQQADGLS 250 (284)
T ss_dssp -----S---------CCEEEEEEEECS---SHHHHHHHHHHHTTCE
T ss_pred -----C---------CCcccEEEEEeC---CHHHHHHHHHHhCCCc
Confidence 0 113457899999 9999999999999999
No 32
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.96 E-value=0.00013 Score=62.99 Aligned_cols=151 Identities=13% Similarity=0.165 Sum_probs=92.9
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeecC--CcceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCCC
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTKS--TLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFP 129 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~ks--TlefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dFP 129 (305)
.++.=+|.+-+...= ....+++.+. .--||.|+ +....+..++.|||..+ .| ..|+|..+..+.+.+
T Consensus 46 ~~te~~L~~~F~~~G---~i~~v~i~~~~~g~afV~F~----~~~~A~~Ai~~l~g~~~--~g--~~l~v~~a~~~~~~~ 114 (229)
T 2adc_A 46 RVTPQSLFILFGVYG---DVQRVKILFNKKENALVQMA----DGNQAQLAMSHLNGHKL--HG--KPIRITLSKHQNVQL 114 (229)
T ss_dssp TCCHHHHHHHHHHHT---CEEEEEECCTTSCCEEEEES----CHHHHHHHHHHHTTCBC--SS--SBCEEECCSCCCCCC
T ss_pred cCCHHHHHHHHHhCC---CeEEEEEEECCCCEEEEEEC----CHHHHHHHHHHhCCCeE--CC--eEEEEEEecCccccC
Confidence 455555555554432 2445566543 34578884 44456788888999776 45 456676554433322
Q ss_pred CC--CchhHhhhhcc--cCCCC---------CCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccC-cceeecC
Q psy6597 130 TR--HDWDSYFRDAK--NMNEM---------KPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYG-DIREVDI 195 (305)
Q Consensus 130 tr--hdWdsfFrdak--~m~E~---------kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG-~IR~vDI 195 (305)
.+ ..+..-.++-. ..+.. .......||++.|||..+ ++..|+.+|+.|| +|..|.|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~----------t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 115 PREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV----------SEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp CCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTC----------CHHHHHHHHHTTSCCEEEEEE
T ss_pred ccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccC----------CHHHHHHHHHHcCCCeeEEEE
Confidence 21 11111111000 00000 011224789999998654 5788999999999 9999998
Q ss_pred -CCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 196 -PINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 196 -P~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
|. +.+ -|||+|. ...+-.+|++.|.|..
T Consensus 185 ~~~-----------~~g------------~afV~f~---~~~~A~~Ai~~l~g~~ 213 (229)
T 2adc_A 185 FQK-----------DRK------------MALIQMG---SVEEAVQALIDLHNHD 213 (229)
T ss_dssp CSS-----------STT------------CEEEEES---SHHHHHHHHHHHTTCB
T ss_pred EEC-----------CCc------------EEEEEEC---CHHHHHHHHHHHCCCc
Confidence 41 111 3899999 9999999999999998
No 33
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.95 E-value=1.8e-05 Score=62.43 Aligned_cols=60 Identities=13% Similarity=0.040 Sum_probs=50.3
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
.|||+.|||.. -+|.-|+.+|+.||+|.+|.|+. + ++ -|||+|+
T Consensus 16 ~~l~V~nLp~~----------~te~~L~~~F~~fG~V~~v~i~~-----------~---kg---------~aFVef~--- 59 (104)
T 1wex_A 16 PVVHVRGLCES----------VVEADLVEALEKFGTICYVMMMP-----------F---KR---------QALVEFE--- 59 (104)
T ss_dssp SEEEEESCCSS----------CCHHHHHHHHTTTSCEEEEEEET-----------T---TT---------EEEEEES---
T ss_pred CEEEEeCCCCC----------CCHHHHHHHHHhCCCEEEEEEEC-----------C---CC---------EEEEEEC---
Confidence 58999999943 36888999999999999998842 1 11 2999999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
+..+-.+||+.|.|..
T Consensus 60 ~~~~A~~Ai~~l~~~~ 75 (104)
T 1wex_A 60 NIDSAKECVTFAADVP 75 (104)
T ss_dssp SHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHhccCC
Confidence 9999999999998876
No 34
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=4.2e-05 Score=58.76 Aligned_cols=66 Identities=26% Similarity=0.273 Sum_probs=53.4
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
..+-||++.|||..+ +++-|+.+|+.||+|..|.|+.. ...++ -|||+|+
T Consensus 20 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~v~~~~i~~~-----------~~~~g---------~afV~f~ 69 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDI----------RTKDIEDVFYKYGAIRDIDLKNR-----------RGGPP---------FAFVEFE 69 (109)
T ss_dssp CCSSEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEECCS-----------SSSSC---------CEEEEES
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEEC-----------CCCCc---------EEEEEEC
Confidence 445699999999643 67889999999999999999431 11121 3899999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 70 ---~~~~A~~A~~~l~g~~ 85 (109)
T 1x4a_A 70 ---DPRDAEDAVYGRDGYD 85 (109)
T ss_dssp ---CHHHHHHHHHHHTTCE
T ss_pred ---CHHHHHHHHHHcCCCE
Confidence 9999999999999988
No 35
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.95 E-value=5.2e-05 Score=63.08 Aligned_cols=146 Identities=12% Similarity=0.188 Sum_probs=90.6
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeecC-------CcceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeecc
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTKS-------TLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEA 124 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~ks-------TlefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Ea 124 (305)
.++.=+|.+-+..+= ....+++.+. ..-||.|+ +....+..++.|||..| .|- .|+|..+..
T Consensus 39 ~~t~~~l~~~f~~~G---~i~~v~i~~~~~~g~~~g~afV~f~----~~~~A~~A~~~l~~~~~--~g~--~l~v~~~~~ 107 (216)
T 2qfj_A 39 ELGEDTIRQAFAPFG---PIKSIDMSWDSVTMKHKGFAFVEYE----VPEAAQLALEQMNSVML--GGR--NIKVGRPSN 107 (216)
T ss_dssp TCCHHHHHHHHGGGS---CEEEEEECCC-CC-CCCSEEEEEES----SHHHHHHHHHHHSSCCC--C-C--CCEEECCSC
T ss_pred CCCHHHHHHHHHhCC---CEEEEEEeecCCCCccCceEEEEeC----CHHHHHHHHHHccCCee--CCe--eEEEecCCC
Confidence 456656655555442 2345555432 12478885 34456788888998764 343 345533221
Q ss_pred CCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccc
Q psy6597 125 KPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQ 204 (305)
Q Consensus 125 k~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~ 204 (305)
..+..-..+. . .......-||++.|||-.+ +++-|+.+|++||+|..|.|+....
T Consensus 108 -------~~~~~~~~~~--~--~~~~~~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~~---- 162 (216)
T 2qfj_A 108 -------IGQAQPIIDQ--L--AEEARAFNRIYVASVHQDL----------SDDDIKSVFEAFGKIKSATLARDPT---- 162 (216)
T ss_dssp -------CGGGHHHHHH--H--HHHHTTSCEEEEECCCTTC----------CHHHHHHHHTTSSCEEEEEEEECTT----
T ss_pred -------ccccchhhhh--h--hcccCCCcEEEEeCCCCcC----------CHHHHHHHHhccCCeeEEEEEecCC----
Confidence 1221111100 0 0012445799999999765 5888999999999999999954210
Q ss_pred cccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 205 MKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 205 m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.+ .-.--|||+|. ...+-.+|++.|.|..
T Consensus 163 -----~g--------~~~g~afV~F~---~~~~A~~A~~~l~g~~ 191 (216)
T 2qfj_A 163 -----TG--------KHKGYGFIEYE---KAQSSQDAVSSMNLFD 191 (216)
T ss_dssp -----TC--------CEEEEEEEEES---SHHHHHHHHHHHTTCB
T ss_pred -----CC--------CcCceEEEEec---CHHHHHHHHHHccCCE
Confidence 11 12335899999 9999999999999998
No 36
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.95 E-value=3.9e-05 Score=60.58 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=55.4
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ ++..|+.+|+.||+|..|.|+... + +. .. --|||+|
T Consensus 4 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~------~--g~-~~---------g~afV~F 55 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRET----------NEKMLKAVFGKHGPISEVLLIKDR------T--SK-SR---------GFAFITF 55 (116)
T ss_dssp TCSCCEEEEECCTTTC----------CHHHHHHHHHTSSCCSEEEEECST------T--TT-CC---------CEEEEEC
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEECC------C--CC-cc---------cEEEEEE
Confidence 4567899999999753 678899999999999999996532 1 11 11 2489999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 56 ~---~~~~A~~Ai~~l~g~~ 72 (116)
T 2fy1_A 56 E---NPADAKNAAKDMNGKS 72 (116)
T ss_dssp S---SHHHHHHHHHHCSSCB
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999988
No 37
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.93 E-value=1.8e-05 Score=60.00 Aligned_cols=65 Identities=17% Similarity=0.059 Sum_probs=50.1
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccC-cceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYG-DIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG-~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
.||+|+|||-.+ +|+-|+..|+.|| +|..|.|+.+ + . .+..++ =|||+|.
T Consensus 2 ~~i~v~nLp~~~----------te~~l~~~F~~~G~~v~~v~i~~d-~------~-t~~~rg---------~aFV~F~-- 52 (91)
T 2lxi_A 2 NIVMLRMLPQAA----------TEDDIRGQLQSHGVQAREVRLMRN-K------S-SGQSRG---------FAFVEFS-- 52 (91)
T ss_dssp CEEEEETCCSSC----------CHHHHHHHHHHHTCCCSBCCSSSC-S------S-SCCCSS---------EEEEECS--
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHHhCCEeEEEEEEec-C------C-CCCcCc---------eEEEEec--
Confidence 589999999765 6888999999999 8999999642 1 0 111121 3899999
Q ss_pred CChhHHHHHHHHHhCC
Q psy6597 233 TDHVTMFIQVDIISGM 248 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGm 248 (305)
...+-.+||+++.|.
T Consensus 53 -~~~~A~~Ai~~~~~~ 67 (91)
T 2lxi_A 53 -HLQDATRWMEANQHS 67 (91)
T ss_dssp -SHHHHHHHHHTTTTE
T ss_pred -CHHHHHHHHHhcCCC
Confidence 999999999987654
No 38
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=5.4e-05 Score=57.46 Aligned_cols=69 Identities=16% Similarity=0.288 Sum_probs=55.7
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
....+-||++.|||..+ ++..|+.+|+.||+|..|.|+.. . +++ ++ -|||+
T Consensus 11 ~~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~-------~--~~~-~g---------~afV~ 61 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDV----------TEVLILQLFSQIGPCKSCKMITE-------H--TSN-DP---------YCFVE 61 (103)
T ss_dssp CSCCCCEEEEESCCTTC----------CHHHHHHHHHHHSCEEEEEEECC-------C--CSS-CC---------EEEEE
T ss_pred CCCCCCEEEEeCCCccC----------CHHHHHHHHHhcCCEeEEEEEec-------C--CCC-CC---------EEEEE
Confidence 34567899999999643 67889999999999999999653 1 111 11 48999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|++.|.|..
T Consensus 62 f~---~~~~a~~A~~~l~g~~ 79 (103)
T 2cqi_A 62 FY---EHRDAAAALAAMNGRK 79 (103)
T ss_dssp ES---SHHHHHHHHHHHTTEE
T ss_pred EC---CHHHHHHHHHHhCCCC
Confidence 99 9999999999999988
No 39
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=5.3e-05 Score=57.22 Aligned_cols=70 Identities=14% Similarity=0.221 Sum_probs=55.0
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
....-||++.|||..+ ++..|+.+|+.||+|..|.|+.... .+... --|||+|
T Consensus 9 ~~~~~~l~V~nLp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~~--------~~~~~---------g~afV~f 61 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEV----------DDKVLHAAFIPFGDITDIQIPLDYE--------TEKHR---------GFAFVEF 61 (102)
T ss_dssp CCCCSCEEEESCCSSC----------CHHHHHHHHTTTSCCCCEECCCCSS--------SCCCS---------SEEEECC
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHhhccCCEEEEEEEecCC--------CCCcc---------eEEEEEE
Confidence 3456799999999654 5788999999999999999965211 01111 2389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 62 ~---~~~~A~~A~~~l~g~~ 78 (102)
T 2cqb_A 62 E---LAEDAAAAIDNMNESE 78 (102)
T ss_dssp S---SHHHHHHHHHHHTTEE
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999987
No 40
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.92 E-value=0.00013 Score=60.47 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=91.7
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeecC--CcceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCC-
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTKS--TLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDF- 128 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~ks--TlefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dF- 128 (305)
.++.=+|.+-+...= ....+++... .--||.|+ +....+..++.|||..+ .| ..|+|..+..+.+.
T Consensus 15 ~~~~~~l~~~F~~~G---~i~~v~i~~~~~g~afV~f~----~~~~a~~A~~~l~~~~~--~g--~~l~v~~a~~~~~~~ 83 (198)
T 1qm9_A 15 RVTPQSLFILFGVYG---DVQRVKILFNKKENALVQMA----DGNQAQLAMSHLNGHKL--HG--KPIRITLSKHQNVQL 83 (198)
T ss_dssp SCCHHHHHHHHHTTC---CCSEEECSTTCSSCCEEECT----TTHHHHHHHHHHTTCCC--SS--CCCEEEECCCCSCCC
T ss_pred cCCHHHHHHHHHhcC---CEEEEEEEeCCCCEEEEEEC----CHHHHHHHHHHhCCCee--cC--eEEEEEEecCCCcCC
Confidence 445545554444331 2345555543 34578884 44457788889999776 55 45677655433222
Q ss_pred CC-CCchhHhhhhcccCCC--------------CCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccC-ccee
Q psy6597 129 PT-RHDWDSYFRDAKNMNE--------------MKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYG-DIRE 192 (305)
Q Consensus 129 Pt-rhdWdsfFrdak~m~E--------------~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG-~IR~ 192 (305)
|. ..+.. ...+++.. ........||++.|||..+ +++.|+.+|+.|| +|..
T Consensus 84 ~~~~~~~~---~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~~v~~ 150 (198)
T 1qm9_A 84 PREGQEDQ---GLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV----------SEEDLKVLFSSNGGVVKG 150 (198)
T ss_dssp SSSSSSSS---SCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTC----------CHHHHHHHHHHTTSCCCE
T ss_pred CCcCCccc---cccccccCCchhhccCccccccccCCCCccEEEEeCCCCCC----------CHHHHHHHHHHcCCCceE
Confidence 21 11111 00011110 0111225789999998644 6788999999999 9999
Q ss_pred ecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 193 VDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 193 vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
|.|-.. . + --|||+|. ...+-.+|++.|.|..
T Consensus 151 v~i~~~----------~---~---------g~afV~f~---~~~~A~~A~~~l~g~~ 182 (198)
T 1qm9_A 151 FKFFQK----------D---R---------KMALIQMG---SVEEAVQALIDLHNHD 182 (198)
T ss_dssp EEESST----------T---S---------SCEEEECS---SHHHHHHHHHHHTSSC
T ss_pred EEEEeC----------C---C---------cEEEEEeC---CHHHHHHHHHHhcCCc
Confidence 998221 0 1 14899999 9999999999999998
No 41
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.92 E-value=9.3e-05 Score=56.19 Aligned_cols=71 Identities=11% Similarity=0.207 Sum_probs=55.4
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
....-||++.|||..+ ++.-|+.+|+.||+|..|.|+...+. . +. ..+ -|||+|
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~~----~--~~-~~g---------~afV~f 65 (107)
T 2cph_A 12 KQTTSKILVRNIPFQA----------NQREIRELFSTFGELKTVRLPKKMTG----T--GA-HRG---------FGFVDF 65 (107)
T ss_dssp SSCCCCEEEESCCTTC----------CHHHHHHHHHTTSCEEEEECCCCCSS----S--CS-SCS---------EEEEEE
T ss_pred CCCCCEEEEeCCCCcC----------CHHHHHHHHHccCCeEEEEEecCCCC----C--CC-cCc---------eEEEEE
Confidence 4556799999999654 67889999999999999999653111 0 11 111 389999
Q ss_pred cCCCChhHHHHHHHHH-hCCC
Q psy6597 230 LPGTDHVTMFIQVDII-SGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aL-rGmk 249 (305)
. ...+-.+|++.| .|..
T Consensus 66 ~---~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 66 I---TKQDAKKAFNALCHSTH 83 (107)
T ss_dssp S---SHHHHHHHHHHHHTCCB
T ss_pred C---CHHHHHHHHHHhccCCe
Confidence 9 999999999999 7887
No 42
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.92 E-value=0.00049 Score=60.26 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=51.7
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
.||+|.|||-.+ ++..|+.+|++||.|..|.|.. +. + --+||+|.
T Consensus 208 ~~l~v~nl~~~~----------~~~~l~~~F~~~G~i~~v~~~~-----------~~--~---------g~afV~f~--- 252 (282)
T 3pgw_A 208 HILFLTNLPEET----------NELMLSMLFNQFPGFKEVRLVP-----------GR--H---------DIAFVEFD--- 252 (282)
T ss_pred CEEEEeCCCCcC----------CHHHHHHHHHhcCCeEEEEEec-----------CC--C---------cEEEEEeC---
Confidence 579999999543 6888999999999999999962 11 1 16899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|+++|.|..
T Consensus 253 ~~~~A~~A~~~l~g~~ 268 (282)
T 3pgw_A 253 NEVQAGAARDALQGFK 268 (282)
T ss_pred CHHHHHHHHHHcCCcE
Confidence 9999999999999988
No 43
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=6.3e-05 Score=56.53 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=54.3
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-||++.|||..+ ++.-|+.+|+.||+|..|.|+.... . +. .. --|||+|.
T Consensus 6 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~-----~--~~-~~---------g~afV~f~ 58 (99)
T 1whw_A 6 SGSGRLFVRNLSYTS----------SEEDLEKLFSAYGPLSELHYPIDSL-----T--KK-PK---------GFAFVTFM 58 (99)
T ss_dssp CSCEEEEEECCCTTC----------CHHHHHHHHHTTSCEEEEECCCCTT-----T--CC-CC---------SEEEEEES
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEeEEEEEecCC-----C--CC-cC---------eEEEEEEC
Confidence 455699999999653 6778999999999999999975320 0 11 11 13899999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 59 ---~~~~a~~A~~~l~g~~ 74 (99)
T 1whw_A 59 ---FPEHAVKAYAEVDGQV 74 (99)
T ss_dssp ---SHHHHHHHHHHTTTEE
T ss_pred ---CHHHHHHHHHHhCCCE
Confidence 9999999999999987
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=7.8e-05 Score=56.59 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=54.9
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ ++..|+.+|+.||+|..|.|+.... .+...+ -|||+|
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~--------~~~~~g---------~afV~f 64 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKV----------SEPLLWELFLQAGPVVNTHMPKDRV--------TGQHQG---------YGFVEF 64 (105)
T ss_dssp CCTTTEEEEECCCTTC----------CHHHHHHHHHTTSCEEEEECCBCSS--------SCSBCS---------CEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCC--------CCcCCc---------EEEEEE
Confidence 4556799999999654 6788999999999999999964211 011111 289999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 65 ~---~~~~a~~A~~~l~g~~ 81 (105)
T 1x5u_A 65 L---SEEDADYAIKIMDMIK 81 (105)
T ss_dssp S---SHHHHHHHHHHSSSCB
T ss_pred C---CHHHHHHHHHHhCCCe
Confidence 9 9999999999999988
No 45
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.91 E-value=2.6e-05 Score=59.79 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=53.1
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||. ..+- ...-++..|+.+|++||+|..|.||.... + +..++ =|||+|.
T Consensus 7 ~~vfV~nLp~--v~~~--~~~~~~~~L~~~F~~~G~i~~v~i~~d~~-----t---g~~kG---------~afV~f~--- 62 (100)
T 3ns6_A 7 QYIVVNGAPV--IPSA--KVPVLKKALTSLFSKAGKVVNMEFPIDEA-----T---GKTKG---------FLFVECG--- 62 (100)
T ss_dssp GEEEEESCCC--CBGG--GHHHHHHHHHHHHHTTSCEEEEECCEETT-----T---TEECS---------EEEEEES---
T ss_pred cEEEEeCCCc--CChH--HHHHHHHHHHHHHHhcCCEeEEEEEEcCC-----C---Cccce---------EEEEEEC---
Confidence 4899999995 1100 01236788999999999999999975210 0 11121 2799999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 63 ~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 63 SMNDAKKIIKSFHGKR 78 (100)
T ss_dssp SHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHhCCcc
Confidence 9999999999999998
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=3.7e-05 Score=58.48 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=52.4
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||..+ ++.-|+.+|+.||+|..|.|+..- ..+ .-.--|||+|.
T Consensus 24 ~~l~V~nlp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~---------~~~--------~~~g~afV~f~--- 73 (106)
T 1p27_B 24 WILFVTGVHEEA----------TEEDIHDKFAEYGEIKNIHLNLDR---------RTG--------YLKGYTLVEYE--- 73 (106)
T ss_dssp EEEEEECCCTTC----------CHHHHHHHHGGGSCEEEEEEEECT---------TTS--------SEEEEEEEEES---
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHhccCCeEEEEEEecC---------CCC--------ceeeEEEEEEC---
Confidence 479999999754 677899999999999999985311 111 11224899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 74 ~~~~a~~A~~~l~g~~ 89 (106)
T 1p27_B 74 TYKEAQAAMEGLNGQD 89 (106)
T ss_dssp CHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHhcCCE
Confidence 9999999999999988
No 47
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.89 E-value=5.7e-05 Score=58.75 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=55.7
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
....+-||++.|||... +++-|+.+|++||+|..|.|+.. + ++ .++ -|||+
T Consensus 25 ~~~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~-~--------~~-~kg---------~afV~ 75 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRF----------RDPDLRQMFGQFGKILDVEIIFN-E--------RG-SKG---------FGFVT 75 (109)
T ss_dssp CTTCCCEEEEESCCTTC----------CHHHHHHHGGGTCCCSCEEECCB-T--------TB-CTT---------EEEEE
T ss_pred CCCCCCEEEEECCCCcC----------CHHHHHHHHHhcCCEEEEEEEEC-C--------CC-Cce---------EEEEE
Confidence 35567799999999653 67889999999999999999652 1 11 121 38999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|++.|.|..
T Consensus 76 f~---~~~~A~~Ai~~l~g~~ 93 (109)
T 2err_A 76 FE---NSADADRAREKLHGTV 93 (109)
T ss_dssp CC---CSHHHHHHHHHHTTCE
T ss_pred EC---CHHHHHHHHHHcCCCE
Confidence 99 9999999999999988
No 48
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=6.2e-05 Score=57.11 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=55.7
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
....-||++.|||..+ ++.-|+.+|+.||+|..|.|+.. . +. -.--|||+|
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~-------~--g~----------~~g~afV~f 62 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGI----------DDERLRKAFSPFGTITSAKVMME-------G--GR----------SKGFGFVCF 62 (103)
T ss_dssp CSSCCCEEEECCCTTC----------CHHHHHHTTTTTSCEEEEEEEEC-------S--SS----------EEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEcC-------C--CC----------cCEEEEEEE
Confidence 4566799999999764 57889999999999999999642 1 11 123589999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 63 ~---~~~~A~~A~~~l~g~~ 79 (103)
T 2d9p_A 63 S---SPEEATKAVTEMNGRI 79 (103)
T ss_dssp S---SHHHHHHHHHHHTTCB
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999988
No 49
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.89 E-value=6e-05 Score=56.64 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=52.0
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||..+ ++..|+.+|++||+|..+.|+... . .+... --|||+|.
T Consensus 3 ~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~-------~-~g~~~---------g~afV~f~--- 52 (96)
T 2x1f_A 3 RVVYLGSIPYDQ----------TEEQILDLCSNVGPVINLKMMFDP-------Q-TGRSK---------GYAFIEFR--- 52 (96)
T ss_dssp SEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEECCBCT-------T-TCCBC---------SEEEEEES---
T ss_pred cEEEEECCCCCC----------CHHHHHHHHHhcCCEEEEEEEeCC-------C-CCccc---------eEEEEEEC---
Confidence 389999999543 578899999999999999996421 0 01111 13899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 53 ~~~~A~~Ai~~l~g~~ 68 (96)
T 2x1f_A 53 DLESSASAVRNLNGYQ 68 (96)
T ss_dssp SHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHhCCCe
Confidence 9999999999999988
No 50
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=8.4e-05 Score=57.34 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=55.3
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ +++.|+.+|+.||+|..+.|+... . + . -.--|||+|
T Consensus 22 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~~~i~~~~------~--g-~---------~~g~afV~f 73 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSM----------DEQELENMLKPFGQVISTRILRDS------S--G-T---------SRGVGFARM 73 (114)
T ss_dssp CCCTTEEEEESCCTTC----------CHHHHHHTTTTTSCEEEEEEEECS------S--S-C---------EEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEECC------C--C-C---------cceEEEEEE
Confidence 3456799999999765 678899999999999999995421 0 1 1 112389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 74 ~---~~~~a~~A~~~l~g~~ 90 (114)
T 1x5o_A 74 E---STEKCEAVIGHFNGKF 90 (114)
T ss_dssp S---CHHHHHHHHHHHBTCC
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999999
No 51
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.87 E-value=7.5e-05 Score=56.88 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=55.9
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
+.+..-+|++.|||..+ ++.-|+.+|++||+|..|.|+... . + .-.--|||+
T Consensus 25 ~~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~------~--g----------~~~g~afV~ 76 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGV----------SDADIQELFAEFGTLKKAAVHYDR------S--G----------RSLGTADVH 76 (107)
T ss_dssp CCCCSEEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEEEEECT------T--S----------CEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEECC------C--C----------CcceEEEEE
Confidence 34556789999999654 678899999999999999985421 0 1 123458999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|++.|.|..
T Consensus 77 f~---~~~~a~~A~~~l~g~~ 94 (107)
T 3ulh_A 77 FE---RKADALKAMKQYNGVP 94 (107)
T ss_dssp ES---SHHHHHHHHHHHTTCE
T ss_pred EC---CHHHHHHHHHHhCCCE
Confidence 99 9999999999999998
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.87 E-value=9.5e-05 Score=56.07 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=55.1
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
.+.+-||++.|||..+ ++..|+.+|+.||+|..|.|+.... .+... --|||+|
T Consensus 10 ~~~~~~l~V~nLp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~~--------~~~~~---------g~afV~f 62 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRT----------SPDSLRRVFEKYGRVGDVYIPREPH--------TKAPR---------GFAFVRF 62 (103)
T ss_dssp CSCCCEEEEESCCTTC----------CHHHHHHHHTTTSCEEEEECCBCSS--------SCSBC---------SCEEEEE
T ss_pred CCCCeEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEeCCC--------CCCCC---------eEEEEEE
Confidence 3456799999999653 6788999999999999999964211 01111 2389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 63 ~---~~~~A~~A~~~l~g~~ 79 (103)
T 2dnm_A 63 H---DRRDAQDAEAAMDGAE 79 (103)
T ss_dssp S---SSSHHHHHHHHHSSCC
T ss_pred C---CHHHHHHHHHHcCCCE
Confidence 9 9999999999999988
No 53
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.87 E-value=2e-05 Score=57.65 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=52.1
Q ss_pred eEEeCCCcccccccCCCCCCC--cHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQP--SEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kP--Se~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
||++.|||... .++- ++..|+.+|++||+|..|.|| ++. |. .++ -|||+|.
T Consensus 3 ~l~V~nLp~~~------~~~~~~t~~~l~~~F~~~G~i~~v~i~-----~~~----g~-~~g---------~afV~f~-- 55 (81)
T 2krb_A 3 VIVVDNVPQVG------PDRLEKLKNVIHKIFSKFGKITNDFYP-----EED----GK-TKG---------YIFLEYA-- 55 (81)
T ss_dssp EEEEESCCCCC------TTTHHHHHHHHHHHHHTTCCEEEEECC-----CBT----TB-CCC---------EEEEEES--
T ss_pred EEEEeCCCCCc------HHHHHHHHHHHHHHHhhcCCeEEEEec-----CCC----Cc-EeE---------EEEEEEC--
Confidence 79999999422 2222 788899999999999999987 111 11 121 3899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 56 -~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 56 -SPAHAVDAVKNADGYK 71 (81)
T ss_dssp -SHHHHHHHHTTSSSCC
T ss_pred -CHHHHHHHHHHhcCcc
Confidence 9999999999999998
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.86 E-value=0.0001 Score=53.79 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=53.2
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
..-||++.|||..+ ++.-|+.+|+.||+|.++.|+..- ..+ .-.--|||+|.
T Consensus 5 ~~~~l~v~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~---------~~~--------~~~g~afV~f~- 56 (87)
T 3bs9_A 5 SHFHVFVGDLSPEI----------TTAAIAAAFAPFGRISDARVVKDM---------ATG--------KSKGYGFVSFF- 56 (87)
T ss_dssp -CEEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECT---------TTC--------CEEEEEEEEES-
T ss_pred CceEEEEeCCCCCC----------CHHHHHHHHHhcCCEeEEEEEecC---------CCC--------ccceEEEEEEC-
Confidence 34589999999654 678899999999999999985310 011 11234899999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 57 --~~~~A~~A~~~l~g~~ 72 (87)
T 3bs9_A 57 --NKWDAENAIQQMGGQW 72 (87)
T ss_dssp --SHHHHHHHHHHHTTCE
T ss_pred --CHHHHHHHHHHcCCCE
Confidence 9999999999999988
No 55
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=6.4e-05 Score=55.86 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=53.9
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||-.+ ++..|+.+|+.||+|..+.|+ . + -|||+|
T Consensus 6 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~~~~~---------~--~--------------~afV~f 50 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAAC----------TSQELRSLFERRGRVIECDVV---------K--D--------------YAFVHM 50 (90)
T ss_dssp SCCSCCEEEESCCTTC----------CHHHHHHHHHHHSCEEEEEEC---------S--S--------------CEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHcCCCEEEEEEE---------C--C--------------EEEEEE
Confidence 4556799999999654 678899999999999999995 1 1 489999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 51 ~---~~~~a~~A~~~l~g~~ 67 (90)
T 2dnp_A 51 E---KEADAKAAIAQLNGKE 67 (90)
T ss_dssp S---CHHHHHHHHHHHTTCE
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999988
No 56
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.85 E-value=0.0001 Score=53.33 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=52.2
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
||++.|||-.+ ++.-|+..|+.||+|..+.|+.. + ..+ .-.--|||+|. .
T Consensus 3 ~l~V~nlp~~~----------t~~~l~~~f~~~G~i~~~~i~~~-~--------~~~--------~~~g~afV~f~---~ 52 (83)
T 3md1_A 3 NLFVGDLNVNV----------DDETLRNAFKDFPSYLSGHVMWD-M--------QTG--------SSRGYGFVSFT---S 52 (83)
T ss_dssp EEEEECCCTTC----------CHHHHHHHHTTSTTEEEEEEEEC-T--------TTC--------CEEEEEEEEES---C
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEEc-C--------CCC--------CccceEEEEEC---C
Confidence 79999999654 57889999999999999998531 1 011 12335899999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
..+-.+|++.|.|..
T Consensus 53 ~~~a~~a~~~l~g~~ 67 (83)
T 3md1_A 53 QDDAQNAMDSMQGQD 67 (83)
T ss_dssp HHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhcCCe
Confidence 999999999999998
No 57
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.84 E-value=4.9e-05 Score=59.99 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=53.3
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
+-||++.|||-. -+|..|+.+|++||+|..|.|+.+ +. .+ .-.-=|||+|+
T Consensus 6 ~~~lfV~nL~~~----------~te~~L~~~F~~~G~i~~v~i~~d-~~--------tg--------~~rG~aFV~f~-- 56 (110)
T 3s8s_A 6 LKEVTFARLNDN----------VRETFLKDMCRKYGEVEEVEILLH-PR--------TR--------KHLGLARVLFT-- 56 (110)
T ss_dssp CCEEEEESCCTT----------CCHHHHHHHHTTTSCEEEEEEEEC-TT--------TC--------CEEEEEEEEES--
T ss_pred CcEEEEECCCCC----------CCHHHHHHHHHhcCCeeEEEEEEC-CC--------CC--------ceeeEEEEEEC--
Confidence 468999999843 368889999999999999999542 11 11 11223899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
+..+-.+|++.|.|..
T Consensus 57 -~~~~A~~Ai~~lng~~ 72 (110)
T 3s8s_A 57 -STRGAKETVKNLHLTS 72 (110)
T ss_dssp -SHHHHHHHHHHHTTCE
T ss_pred -CHHHHHHHHHHhCCCE
Confidence 9999999999999999
No 58
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.84 E-value=6.2e-05 Score=57.51 Aligned_cols=62 Identities=21% Similarity=0.258 Sum_probs=52.0
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-||++.|||.++ -+++-|+.+|+.||+|..+.|+ ++ -|||+|.
T Consensus 20 ~~~~~l~V~nLp~~~---------~t~~~L~~~F~~~G~v~~v~i~----------------~g---------~afV~f~ 65 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKN---------VSKEDLFRIFSPYGHIMQINIK----------------NA---------FGFIQFD 65 (97)
T ss_dssp CTTCEEEEESCCSSC---------CCHHHHHHHHGGGSCEEEEEEC----------------SS---------EEEEEES
T ss_pred CCCCEEEEeCCCccc---------CCHHHHHHHHHhcCCEEEEEEe----------------CC---------EEEEEEC
Confidence 345689999999732 2577799999999999999993 11 2899999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 66 ---~~~~A~~Ai~~l~g~~ 81 (97)
T 2xnq_A 66 ---NPQSVRDAIEXESQEM 81 (97)
T ss_dssp ---SHHHHHHHHHHHTTSE
T ss_pred ---CHHHHHHHHHHcCCCE
Confidence 9999999999999988
No 59
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.83 E-value=3.3e-05 Score=58.48 Aligned_cols=60 Identities=25% Similarity=0.196 Sum_probs=50.9
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
||++.|||..+ ++.-|+.+|++||+|..|.|+.. .++ -|||+|. .
T Consensus 2 ~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~-------------~~g---------~afV~f~---~ 46 (101)
T 2hvz_A 2 KVYVGNLGTGA----------GKGELERAFSYYGPLRTVWIARN-------------PPG---------FAFVEFE---D 46 (101)
T ss_dssp EEEEECCCSSC----------SHHHHHHHHHHHCCCSEEEEESS-------------SSS---------EEEEECS---S
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEeeC-------------CCC---------EEEEEEC---C
Confidence 79999998543 67789999999999999999653 011 3899999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
..+-.+|+++|.|..
T Consensus 47 ~~~a~~A~~~l~g~~ 61 (101)
T 2hvz_A 47 PRDAEDAVRGLDGKV 61 (101)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCe
Confidence 999999999999988
No 60
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=7.6e-05 Score=55.37 Aligned_cols=68 Identities=21% Similarity=0.110 Sum_probs=53.5
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
..-||++.|||..+ ++..|+.+|++||+|..|.|+... ..+ .-.--|||+|.
T Consensus 14 ~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~v~~v~i~~~~---------~~~--------~~~g~afV~f~- 65 (95)
T 2cqc_A 14 PNCCLGVFGLSLYT----------TERDLREVFSKYGPIADVSIVYDQ---------QSR--------RSRGFAFVYFE- 65 (95)
T ss_dssp GGGCEEEESCCSSC----------CHHHHHHHHHTTSCEEEEEEEECS---------SSS--------SEEEEEEEEES-
T ss_pred CCCEEEEECCCCCC----------CHHHHHHHHHhcCCeeEEEEEEcC---------CCC--------CcccEEEEEEC-
Confidence 34579999999654 677899999999999999995311 111 12335899999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 66 --~~~~A~~A~~~l~g~~ 81 (95)
T 2cqc_A 66 --NVDDAKEAKERANGME 81 (95)
T ss_dssp --SHHHHHHHHHHHTTEE
T ss_pred --CHHHHHHHHHHhCCCE
Confidence 9999999999999987
No 61
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=2.3e-05 Score=57.43 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=55.2
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ ++.-|+.+|++||+|..+.|+.... . +. .+ --|||+|
T Consensus 2 ~~~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~i~~~~i~~~~~-----~--~~-~~---------g~afV~f 54 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGT----------TDQDLVKLCQPYGKIVSTKAILDKT-----T--NK-CK---------GYGFVDF 54 (85)
T ss_dssp CCCCCEEEEESCCTTC----------CHHHHHTTSTTTSCEEEEEEECCSS-----S--CS-CC---------SEEEEEE
T ss_pred CCCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCC-----C--CC-cC---------cEEEEEE
Confidence 3456799999999764 6788999999999999999965211 0 11 11 1389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 55 ~---~~~~a~~A~~~l~g~~ 71 (85)
T 1x4e_A 55 D---SPSAAQKAVTALKASG 71 (85)
T ss_dssp S---CHHHHHHHHHHHHHHT
T ss_pred C---CHHHHHHHHHHhcCCe
Confidence 9 9999999999999988
No 62
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.82 E-value=7.6e-05 Score=55.22 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=54.7
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ ++.-|+.+|+.||+|..+.|+. | .+. -.--|||+|
T Consensus 5 ~~~~~~l~V~nlp~~~----------t~~~l~~~f~~~G~v~~~~i~~-~--------~g~----------~~g~afV~f 55 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDF----------TWKMLKDKFNECGHVLYADIKM-E--------NGK----------SKGCGVVKF 55 (92)
T ss_dssp SSSCCEEEECSCCTTC----------CHHHHHHHHHTTSCEEEEEEEE-S--------SSC----------EEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEc-c--------CCC----------cceEEEEEE
Confidence 4556799999999543 6788999999999999999963 1 111 112389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 56 ~---~~~~a~~a~~~l~g~~ 72 (92)
T 2dgv_A 56 E---SPEVAERACRMMNGMK 72 (92)
T ss_dssp S---SHHHHHHHHHHHTTCC
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999988
No 63
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.82 E-value=8.9e-05 Score=56.86 Aligned_cols=66 Identities=11% Similarity=0.240 Sum_probs=52.4
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||..+ ++.-|+.+|+.||+|..|.|+..- . .+..+ --|||+|.
T Consensus 27 ~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~-------~-~~~~~---------g~afV~f~--- 76 (110)
T 1oo0_B 27 WILFVTSIHEEA----------QEDEIQEKFCDYGEIKNIHLNLDR-------R-TGFSK---------GYALVEYE--- 76 (110)
T ss_dssp EEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEECCBCT-------T-TSSBC---------SEEEEEES---
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEecC-------C-CCCcc---------eEEEEEEC---
Confidence 479999999654 678899999999999999995421 0 01111 14899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 77 ~~~~A~~Ai~~l~g~~ 92 (110)
T 1oo0_B 77 THKQALAAKEALNGAE 92 (110)
T ss_dssp SHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHcCCCE
Confidence 9999999999999988
No 64
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.82 E-value=9.3e-05 Score=57.03 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=53.3
Q ss_pred CCeEEeCCCcccccccCCCCCCC--cHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQP--SEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kP--Se~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
.-||++.|||... .++- ++..|+.+|++||+|..|.|+ |.. |. .++ -|||+|.
T Consensus 15 ~~~l~V~nLp~~~------~~~~~~t~~~l~~~F~~~G~v~~v~i~-----~~~----g~-~~G---------~afV~f~ 69 (105)
T 2nlw_A 15 DSVIVVDNVPQVG------PDRLEKLKNVIHKIFSKFGKITNDFYP-----EED----GK-TKG---------YIFLEYA 69 (105)
T ss_dssp CSEEEEESCCCCC------TTTTTHHHHHHHHHHGGGSCEEEEECC-----CBT----TB-SCC---------EEEEEEC
T ss_pred CCEEEEeCCCcch------hhhhHHHHHHHHHHHhcCCCEEEEEee-----CCC----CC-eee---------EEEEEEC
Confidence 3489999999432 2222 788999999999999999997 211 11 122 3899999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 70 ---~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 70 ---SPAHAVDAVKNADGYK 85 (105)
T ss_dssp ---SSSHHHHHHHHCSSEE
T ss_pred ---CHHHHHHHHHHhCCcc
Confidence 9999999999999988
No 65
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.81 E-value=7.2e-05 Score=58.85 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=61.5
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-||++.|||..+ ++.-|+.+|+.||+|..|.|+... + +.. . --|||+|.
T Consensus 33 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~v~i~~~~------~--g~~-~---------g~afV~f~ 84 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGV----------SDADIQELFAEFGTLKKAAVDYDR------S--GRS-L---------GTADVHFE 84 (124)
T ss_dssp SSCEEEEEESCCSSC----------CHHHHHHHHHTTSCCSEEEEECCS------S--SSC-C---------SEEEEEES
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEECC------C--CCE-e---------eEEEEEEC
Confidence 344589999999654 678899999999999999995421 1 111 1 13899999
Q ss_pred CCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEEe
Q psy6597 231 PGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVVM 277 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~ 277 (305)
...+-.+|++.|.|.. + +| ..+.|.|...
T Consensus 85 ---~~~~A~~Ai~~l~g~~----~-----~g------~~l~V~~a~~ 113 (124)
T 2kt5_A 85 ---RRADALKAMKQYKGVP----L-----DG------RPMDIQLVAS 113 (124)
T ss_dssp ---SHHHHHHHHHHHTTEE----S-----SS------CEEEEEEECC
T ss_pred ---CHHHHHHHHHHcCCCE----E-----CC------cEEEEEEeCC
Confidence 9999999999999988 5 25 3777777643
No 66
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=0.00011 Score=55.37 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||-.+ ++.-|+.+|+.||+|..|.|+... . + .-.--|||+|
T Consensus 14 ~~~~~~l~v~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~------~--g----------~~~g~afV~f 65 (100)
T 2do4_A 14 SLEKHKLFISGLPFSC----------TKEELEEICKAHGTVKDLRLVTNR------A--G----------KPKGLAYVEY 65 (100)
T ss_dssp CCCCSCEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEEEECT------T--S----------CEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhCCCeEEEEEEECC------C--C----------CEEeEEEEEE
Confidence 4556799999999654 678899999999999999995421 0 1 1123589999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 66 ~---~~~~a~~A~~~l~g~~ 82 (100)
T 2do4_A 66 E---NESQASQAVMKMDGMT 82 (100)
T ss_dssp S---SHHHHHHHHHHHTTEE
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999977
No 67
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.79 E-value=6.1e-05 Score=56.14 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=52.9
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceee-cCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREV-DIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~v-DIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
.-||++.|||..+ ++..|+.+|+.||+|..+ .|+.. +. . +. . .--|||+|.
T Consensus 5 ~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~~~~i~~~-~~----~--g~-~---------~g~afV~f~- 56 (96)
T 1x5t_A 5 SSGIFIGNLDPEI----------DEKLLYDTFSAFGVILQTPKIMRD-PD----T--GN-S---------KGYAFINFA- 56 (96)
T ss_dssp CCEEEEECCCTTC----------CHHHHHHHHHTTSCBSSCCEECCC-TT----T--CS-C---------CSEEEEEBS-
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEEEc-CC----C--CC-c---------CeEEEEEEC-
Confidence 4589999999764 578899999999999999 88642 10 0 11 0 123899999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 57 --~~~~A~~A~~~l~g~~ 72 (96)
T 1x5t_A 57 --SFDASDAAIEAMNGQY 72 (96)
T ss_dssp --SHHHHHHHHHTTTTCE
T ss_pred --CHHHHHHHHHHcCCCE
Confidence 9999999999999988
No 68
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.79 E-value=7.1e-05 Score=62.40 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=52.9
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
+.=.|++.|||- .-+|+.|+++|++||+|..|.|+. + . --|.|||+|+
T Consensus 27 ~VL~I~V~NL~~----------~vte~~L~~lFs~yG~V~~V~i~~--------~---~----------~gfqAFVef~- 74 (130)
T 3zzy_A 27 PVLRIIVENLFY----------PVTLDVLHQIFSKFGTVLKIITFT--------K---N----------NQFQALLQYA- 74 (130)
T ss_dssp SEEEEEEESCCS----------CCCHHHHHHHHTTSSCEEEEEEEE--------E---T----------TEEEEEEEES-
T ss_pred ceEEEEECCCCC----------CCCHHHHHHHHhCcCCEEEEEEEc--------C---C----------CCcEEEEEEC-
Confidence 334578999972 357889999999999999998842 1 0 1488999999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
+-.+-.+|+++|.|+.
T Consensus 75 --~~~~A~~Ai~~LnG~~ 90 (130)
T 3zzy_A 75 --DPVSAQHAKLSLDGQN 90 (130)
T ss_dssp --CHHHHHHHHHHHTTCE
T ss_pred --CHHHHHHHHHHcCCCe
Confidence 9999999999999999
No 69
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.79 E-value=0.00011 Score=57.66 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=52.2
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||+|.|||..+ ++..|+.+|++||.|..|.|+..-. . + ..+ --|||+|.
T Consensus 23 ~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~-----~--~-~~~---------g~afV~f~--- 72 (126)
T 3ex7_B 23 WILFVTGVHEEA----------TEEDIHDKFAEYGEIKNIHLNLDRR-----T--G-YLK---------GYTLVEYE--- 72 (126)
T ss_dssp EEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEECCBCTT-----T--S-SBC---------SCEEEEES---
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCC-----C--C-ccc---------eEEEEEEC---
Confidence 389999999543 6788999999999999999964210 0 1 111 13899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 73 ~~~~a~~A~~~l~g~~ 88 (126)
T 3ex7_B 73 TYKEAQAAMEGLNGQD 88 (126)
T ss_dssp SHHHHHHHHHHHTTCB
T ss_pred CHHHHHHHHHHhCCCe
Confidence 9999999999999988
No 70
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.78 E-value=0.00017 Score=55.71 Aligned_cols=70 Identities=9% Similarity=0.119 Sum_probs=55.2
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
....-||+|.|||..+ ++.-|+.+|+.||.|..|.|+..- ..+ .-.--|||+|
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~---------~~~--------~~~g~afV~f 64 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEI----------TTEDIKAAFAPFGRISDARVVKDM---------ATG--------KSKGYGFVSF 64 (115)
T ss_dssp STTCEEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECT---------TTC--------CEEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEEcC---------CCC--------CcceEEEEEE
Confidence 4455699999999765 678899999999999999995310 011 1233589999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 65 ~---~~~~a~~A~~~l~g~~ 81 (115)
T 2dgo_A 65 F---NKWDAENAIQQMGGQW 81 (115)
T ss_dssp S---SHHHHHHHHHHTTTCE
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999987
No 71
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.78 E-value=6.2e-05 Score=58.86 Aligned_cols=63 Identities=16% Similarity=0.306 Sum_probs=53.6
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
+...+-||++.|||..+ ++.-|+.+|+.||+|..|.|+ . | -|||+
T Consensus 27 ~~~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~i~~v~i~---------k----g------------~afV~ 71 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDV----------QESELNEIFGPFGPMKEVKIL---------N----G------------FAFVE 71 (108)
T ss_dssp -CCSCSEEEECSSCTTC----------CHHHHHHHHTTTSCCCEEEEE---------T----T------------EEEEE
T ss_pred CCCCCCEEEEECCCCCC----------CHHHHHHHHHhcCCEEEEEEE---------C----C------------EEEEE
Confidence 34556799999999654 578899999999999999995 1 1 38999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|++.|.|..
T Consensus 72 f~---~~~~A~~Ai~~l~g~~ 89 (108)
T 2jvo_A 72 FE---EAESAAKAIEEVHGKS 89 (108)
T ss_dssp CS---SHHHHHHHHHHHTTCE
T ss_pred EC---CHHHHHHHHHHcCCCE
Confidence 99 9999999999999998
No 72
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.78 E-value=6.4e-05 Score=55.23 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=50.3
Q ss_pred CCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEE
Q psy6597 148 KPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQL 227 (305)
Q Consensus 148 kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayV 227 (305)
+....+-||++.|||-.+ ++..|+.+|++||+|..+.|+... .++ .-.--|||
T Consensus 6 ~~~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~---------~~g--------~~~g~afV 58 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDT----------SKKDLKDYFTKFGEVVDCTIKMDP---------NTG--------RSRGFGFI 58 (87)
T ss_dssp -CCSCTTEEEEECCCTTC----------CHHHHHHHHTTTSCEEEEEEEECT---------TTC--------CEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEeecC---------CCC--------ccccEEEE
Confidence 345667799999999543 678899999999999999996421 111 11234899
Q ss_pred eecCCCChhHHHHHHHH
Q psy6597 228 GKLPGTDHVTMFIQVDI 244 (305)
Q Consensus 228 Qy~~~~ey~~F~kAM~a 244 (305)
+|. ...+-.+|++.
T Consensus 59 ~f~---~~~~a~~A~~~ 72 (87)
T 3s7r_A 59 LFK---DAASVEKVLDQ 72 (87)
T ss_dssp EES---STHHHHHHHHS
T ss_pred EEC---CHHHHHHHHHh
Confidence 999 99999999865
No 73
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=0.00012 Score=55.36 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=53.0
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
..+-||++.|||-.+ ++.-|+.+|+.||+|..|.|+.. ++ -|||+|.
T Consensus 13 ~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~~~~~--------------kg---------~afV~f~ 59 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDI----------TEEEMRKLFEKYGKAGEVFIHKD--------------KG---------FGFIRLE 59 (99)
T ss_dssp CCTTEEEEESCCTTC----------CHHHHHHHTSTTCCCSEEEEETT--------------TT---------EEEEECS
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHhhcCCeEEEEEecC--------------CC---------EEEEEEC
Confidence 445699999999654 67889999999999999998521 11 3899999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 60 ---~~~~a~~a~~~l~g~~ 75 (99)
T 2cpj_A 60 ---TRTLAEIAKVELDNMP 75 (99)
T ss_dssp ---SSHHHHHHHHHHTTCC
T ss_pred ---CHHHHHHHHHHhCCCE
Confidence 9999999999999988
No 74
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=0.00015 Score=54.58 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=52.1
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
.-||++.|||-.+ +++.|+.+|+.||+|..|+|+. + ++ -|||+|.
T Consensus 17 ~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~v~~~~-----------~---~g---------~afV~f~-- 61 (97)
T 1why_A 17 TTRLWVGGLGPNT----------SLAALAREFDRFGSIRTIDHVK-----------G---DS---------FAYIQYE-- 61 (97)
T ss_dssp CSCEEEECCCSSC----------CHHHHHHHHHTTSCEEEEEECS-----------S---SC---------CEEEEES--
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEeC-----------C---CC---------EEEEEEC--
Confidence 4699999999654 6788999999999999999852 1 11 3899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 62 -~~~~A~~A~~~l~g~~ 77 (97)
T 1why_A 62 -SLDAAQAACAKMRGFP 77 (97)
T ss_dssp -SHHHHHHHHHHHTTCB
T ss_pred -CHHHHHHHHHHHCCCE
Confidence 9999999999999988
No 75
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=7.4e-05 Score=57.73 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=53.8
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
....-+|++.|||-.+ ++.-|+.+|+.||+|..+.|+.. --|||+|
T Consensus 12 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~~~i~~~------------------------g~afV~f 57 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSG----------SWQDLKDHMREAGDVCYADVYRD------------------------GTGVVEF 57 (108)
T ss_dssp CSCCCEEEEESCCSSC----------CHHHHHHHHGGGSCEEEEEEETT------------------------TEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEeEEEEecC------------------------CEEEEEE
Confidence 3445689999999554 68889999999999999999542 1389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+||+.|.|..
T Consensus 58 ~---~~~~a~~Ai~~l~g~~ 74 (108)
T 1x4c_A 58 V---RKEDMTYAVRKLDNTK 74 (108)
T ss_dssp S---SHHHHHHHHHHSSSEE
T ss_pred C---CHHHHHHHHHHHCcCC
Confidence 9 9999999999999998
No 76
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.77 E-value=5.3e-05 Score=58.32 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=53.5
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-||++.|||..+ ++..|+.+|+.||+|..|.|+.. ++ -|||+|.
T Consensus 23 ~~~~~l~V~nl~~~~----------t~~~l~~~F~~~G~i~~v~i~~~--------------~g---------~afV~f~ 69 (109)
T 1x4g_A 23 PKNCTVYCGGIASGL----------TDQLMRQTFSPFGQIMEIRVFPE--------------KG---------YSFVRFS 69 (109)
T ss_dssp SSCCEEEEECCSSCC----------CHHHHHHHHHHHSCEEEEEEETT--------------TT---------EEEEEES
T ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEeCC--------------CC---------EEEEEEC
Confidence 345699999999654 67889999999999999999642 11 2899999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 70 ---~~~~a~~A~~~l~g~~ 85 (109)
T 1x4g_A 70 ---THESAAHAIVSVNGTT 85 (109)
T ss_dssp ---SHHHHHHHHHHHTTCE
T ss_pred ---CHHHHHHHHHHcCCCE
Confidence 9999999999999987
No 77
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.77 E-value=0.0001 Score=58.24 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=54.9
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
....-||++.|||-.+ ++.-|+.+|+.||+|..|.|+.. +. .+..++ -|||+|
T Consensus 60 ~~~~~~l~v~nlp~~~----------~~~~l~~~f~~~G~i~~v~i~~~-~~-------~~~~~g---------~afV~f 112 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEV----------DDKVLHAAFIPFGDITDIQIPLD-YE-------TEKHRG---------FAFVEF 112 (140)
T ss_dssp CSSCCEEEEECCCTTC----------CHHHHHHHHGGGSCEEEEECCCC-TT-------TCCCCS---------EEEEEE
T ss_pred CCCCcEEEEEeCCCCC----------CHHHHHHHHHhcCCEEEEEEeec-CC-------CCCcCc---------EEEEEE
Confidence 4556799999999653 67889999999999999999652 11 111121 389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 113 ~---~~~~a~~A~~~l~g~~ 129 (140)
T 2ku7_A 113 E---LAEDAAAAIDNMNESE 129 (140)
T ss_dssp S---CHHHHHHHHHHSTEEE
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999987
No 78
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=8.3e-05 Score=58.41 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=49.2
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-|||+.|||.. -+|+-|+.+|+.||+|.+|.|+. + ++ -|||+|+
T Consensus 16 ~~l~V~nLp~~----------~te~~L~~~F~~fG~v~~v~i~~-----------~---kg---------~aFVef~--- 59 (101)
T 2cq1_A 16 RVLHIRKLPGE----------VTETEVIALGLPFGKVTNILMLK-----------G---KN---------QAFLELA--- 59 (101)
T ss_dssp SEEEEESCCTT----------CCHHHHHHTTTTTSCEEEEEEET-----------T---TT---------EEEEEES---
T ss_pred CEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEC-----------C---CC---------EEEEEEC---
Confidence 58999999933 37888999999999999998743 1 11 2899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
+..+-.+|++.|.|..
T Consensus 60 ~~~~A~~Ai~~l~~~~ 75 (101)
T 2cq1_A 60 TEEAAITMVNYYSAVT 75 (101)
T ss_dssp SHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHhccCC
Confidence 9999999999987655
No 79
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.76 E-value=0.00016 Score=54.43 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=53.9
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ ++.-|+.+|+.||+|..|.|+.. +. . +. .+ --|||+|
T Consensus 7 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~-~~----~--~~-~~---------g~afV~f 59 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNC----------GETELREYFKKFGVVTEVVMIYD-AE----K--QR-PR---------GFGFITF 59 (99)
T ss_dssp CSSCCEEEEESCCSSC----------CHHHHHHHHSSSSCEEEEEECCC-TT----T--CS-CC---------SEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEeC-CC----C--CC-CC---------ceEEEEE
Confidence 4567899999999654 67889999999999999999642 10 0 11 11 2389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++ |.|..
T Consensus 60 ~---~~~~a~~A~~-~~~~~ 75 (99)
T 2dgs_A 60 E---DEQSVDQAVN-MHFHD 75 (99)
T ss_dssp S---SHHHHHHHHH-HCCCB
T ss_pred C---CHHHHHHHHH-hCCCE
Confidence 9 9999999998 88877
No 80
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.00018 Score=55.30 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=54.9
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
+...-||+|.|||..+ ++.-|+.+|+.||+|..|.|+... .+ .-.--|||+|
T Consensus 12 ~~~~~~l~V~nlp~~~----------~~~~l~~~f~~~G~i~~~~i~~~~---------~g---------~~~g~afV~f 63 (114)
T 2do0_A 12 GRLGSTVFVANLDYKV----------GWKKLKEVFSMAGVVVRADILEDK---------DG---------KSRGIGTVTF 63 (114)
T ss_dssp CCCCSCEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEEEECT---------TC---------SEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEECC---------CC---------CeeeEEEEEE
Confidence 3445689999999654 678899999999999999985421 01 1233589999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 64 ~---~~~~a~~A~~~l~g~~ 80 (114)
T 2do0_A 64 E---QSIEAVQAISMFNGQL 80 (114)
T ss_dssp S---SHHHHHHHHHHHTTCE
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999988
No 81
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.76 E-value=0.00021 Score=62.90 Aligned_cols=128 Identities=16% Similarity=0.224 Sum_probs=86.7
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeecC-CcceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCCCC
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTKS-TLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPT 130 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~ks-TlefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dFPt 130 (305)
.++.=+|.+-+..+= ....+++.++ ---||.|+ +....+..++.|||..| .| ..|+|..+..
T Consensus 33 ~~te~~l~~~F~~~G---~i~~v~i~~~kg~afV~f~----~~~~A~~A~~~l~g~~i--~g--~~l~v~~a~~------ 95 (261)
T 3sde_A 33 DITEEDFKRLFERYG---EPSEVFINRDRGFGFIRLE----SRTLAEIAKAELDGTIL--KS--RPLRIRFATH------ 95 (261)
T ss_dssp TCCHHHHHHHTGGGC---CCSEEEEETTTTEEEEECS----SHHHHHHHHHHHTTCEE--TT--EECEEEECCC------
T ss_pred CCCHHHHHHHHHhcC---CEEEEEEeCCCcEEEEEEC----CHHHHHHHHHHcCCcEE--CC--ceeEeeeccc------
Confidence 455555555444332 2345566543 23468784 44557788889999976 44 3455544221
Q ss_pred CCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCC
Q psy6597 131 RHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYIS 210 (305)
Q Consensus 131 rhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~ 210 (305)
..+|++.|||.. -++..|+.+|+.||.|..|.|+.. + + |.
T Consensus 96 ----------------------~~~l~v~nl~~~----------~t~~~l~~~F~~~G~i~~v~i~~~-~-----~--g~ 135 (261)
T 3sde_A 96 ----------------------GAALTVKNLSPV----------VSNELLEQAFSQFGPVEKAVVVVD-D-----R--GR 135 (261)
T ss_dssp ----------------------SSEEEEESCCTT----------CCHHHHHHHHGGGSCEEEEEEEEE-T-----T--SC
T ss_pred ----------------------CCcccccCCCCC----------CCHHHHHHHHHhcCCeEEEEeeeC-C-----C--CC
Confidence 248999999854 367889999999999999999652 1 0 11
Q ss_pred CCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 211 GMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 211 ~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
-.--|||+|. ...+-.+|++.|.|..
T Consensus 136 ----------~~g~afV~f~---~~~~A~~A~~~l~~~~ 161 (261)
T 3sde_A 136 ----------ATGKGFVEFA---AKPPARKALERCGDGA 161 (261)
T ss_dssp ----------EEEEEEEEES---SHHHHHHHHHHHHHSC
T ss_pred ----------cCcEEEEEeC---CHHHHHHHHHHhcCCe
Confidence 2345899999 9999999999997766
No 82
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.76 E-value=0.00012 Score=55.94 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=51.5
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-||++.|||-.+ +++-|+.+|+.||+|..|.|+..-. . +... --|||+|.
T Consensus 13 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~-----~---g~~~---------g~afV~f~ 65 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDS----------EEEALGEVLQQFGDLKYVRVVLHPD-----T---EHSK---------GCAFAQFM 65 (111)
T ss_dssp CCCCCEEEESCCTTC----------CHHHHHHHHHTTSCEEEEECCBCSS-----S---CCBC---------SEEEEEES
T ss_pred CCCCEEEEECCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCC-----C---CCCc---------cEEEEEEC
Confidence 445689999999654 6788999999999999999964210 0 1111 13899999
Q ss_pred CCCChhHHHHHHHHHh
Q psy6597 231 PGTDHVTMFIQVDIIS 246 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLr 246 (305)
...+-.+||+.|.
T Consensus 66 ---~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 66 ---TQEAAQKCLAAAS 78 (111)
T ss_dssp ---SHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHhc
Confidence 9999999999998
No 83
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=0.00013 Score=55.58 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=54.0
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
+.+.+-||++.|||-.+ ++.-|+.+|+.|| |..|.|+....- .+..++ -|||+
T Consensus 11 ~~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G-i~~v~i~~~~~~-------~g~~~g---------~afV~ 63 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDV----------TEESIKEFFRGLN-ISAVRLPREPSN-------PERLKG---------FGYAE 63 (104)
T ss_dssp CSSSCEEEEEESCCSSC----------CHHHHHHHTTTSC-EEEEECCBCSSC-------TTSBCS---------CEEEE
T ss_pred CCCCCCEEEEeCCCCcC----------CHHHHHHHHHHCC-ceEEEEecCCCC-------CCCcCe---------EEEEE
Confidence 45667899999999664 6788999999999 999999642110 011121 28999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|| .|.|..
T Consensus 64 f~---~~~~a~~A~-~l~g~~ 80 (104)
T 1wi8_A 64 FE---DLDSLLSAL-SLNEES 80 (104)
T ss_dssp ES---SHHHHHHHH-GGGTCE
T ss_pred EC---CHHHHHHHH-hcCCCE
Confidence 99 999999999 999988
No 84
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.74 E-value=0.00014 Score=59.40 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=48.2
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHH----HHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAM----LRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~v----l~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
-||++.|||-.. ++.. |+.+|++||+|..|.|+. + + ..++| |||+|
T Consensus 30 ~~LfV~nL~~~~----------~e~~L~~~L~~~F~~~G~I~~v~i~~--------~--~-~~rG~---------aFV~F 79 (127)
T 2a3j_A 30 QVVLITNINPEV----------PKEKLQALLYALASSQGDILDIVVDL--------S--D-DNSGK---------AYIVF 79 (127)
T ss_dssp SEEEEESCCTTS----------CHHHHHHHHHHHHHHHSCEEEEEECC--------C--C-SSCCC---------EEEEE
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHHHhccCCCeEEEEecc--------C--C-CcCCE---------EEEEE
Confidence 589999999332 3433 568999999998887742 1 1 11222 89999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 80 ~---~~~~A~~Ai~~lng~~ 96 (127)
T 2a3j_A 80 A---TQESAQAFVEAFQGYP 96 (127)
T ss_dssp S---SHHHHHHHHHHSTTCC
T ss_pred C---CHHHHHHHHHHHCCCE
Confidence 9 9999999999999998
No 85
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.73 E-value=0.00011 Score=54.85 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=50.9
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHH----HHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLR----RVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~----~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
.-||++.|||..+ ++.-|+ .+|++||.|..|.|+ +. +. .++ -|||+
T Consensus 8 ~~~l~V~nLp~~~----------~~~~l~~~l~~~f~~~G~i~~v~i~-----~~-----~~-~~g---------~afV~ 57 (97)
T 1nu4_A 8 NHTIYINNLNEKI----------KKDELKKSLHAIFSRFGQILDILVS-----RS-----LK-MRG---------QAFVI 57 (97)
T ss_dssp CSEEEEESCCTTS----------CHHHHHHHHHHHHGGGSCEEEEECC-----HH-----HH-HTT---------CEEEE
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHHHHHhCCCEEEEEEE-----cC-----CC-cCc---------EEEEE
Confidence 3589999999654 566677 999999999999996 11 11 011 28999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|++.|.|..
T Consensus 58 f~---~~~~A~~A~~~l~g~~ 75 (97)
T 1nu4_A 58 FK---EVSSATNALRSMQGFP 75 (97)
T ss_dssp ES---SHHHHHHHHHHHTTCE
T ss_pred eC---CHHHHHHHHHHhCCCE
Confidence 99 9999999999999988
No 86
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.73 E-value=0.00017 Score=56.19 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=57.0
Q ss_pred CCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEE
Q psy6597 147 MKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQ 226 (305)
Q Consensus 147 ~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Feay 226 (305)
.++...+-||++.|||..+ ++.-|+.+|++||+|..|.|+... .++ .-.--||
T Consensus 20 ~~~~~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~~---------~~g--------~~~g~af 72 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNI----------TEDMLRGIFEPFGRIESIQLMMDS---------ETG--------RSKGYGF 72 (108)
T ss_dssp CCSCSSCEEEEEECCCSSC----------CHHHHHHHHTTTSCEEEEEEEEET---------TTT--------EEEEEEE
T ss_pred ccCCCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEEcC---------CCC--------ccceEEE
Confidence 3445666799999999654 677899999999999999995310 011 1123589
Q ss_pred EeecCCCChhHHHHHHHHHhCCC
Q psy6597 227 LGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 227 VQy~~~~ey~~F~kAM~aLrGmk 249 (305)
|+|. ...+-.+|++.|.|..
T Consensus 73 V~F~---~~~~A~~Ai~~l~g~~ 92 (108)
T 2jrs_A 73 ITFS---DSECAKKALEQLNGFE 92 (108)
T ss_dssp EEES---CHHHHHHHHHHHTTCC
T ss_pred EEEC---CHHHHHHHHHHcCCCE
Confidence 9999 9999999999999988
No 87
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.72 E-value=7.5e-05 Score=56.95 Aligned_cols=60 Identities=17% Similarity=0.296 Sum_probs=52.2
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
..-||++.|||..+ ++.-|+.+|+.||+|..|.|+ . + -|||+|.
T Consensus 10 ~~~~l~V~nl~~~~----------t~~~l~~~F~~~G~i~~v~~~---------~--~--------------~afV~f~- 53 (103)
T 2dgu_A 10 KVKVLFVRNLANTV----------TEEILEKAFSQFGKLERVKKL---------K--D--------------YAFIHFD- 53 (103)
T ss_dssp CCCCEEEECCCTTC----------CHHHHHHHHHHHSCEEEEEEC---------S--S--------------CEEEEES-
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEE---------C--C--------------EEEEEeC-
Confidence 34689999999664 678899999999999999985 1 1 3899999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 54 --~~~~a~~A~~~l~g~~ 69 (103)
T 2dgu_A 54 --ERDGAVKAMEEMNGKD 69 (103)
T ss_dssp --SHHHHHHHHHHHTTEE
T ss_pred --CHHHHHHHHHHHCCCc
Confidence 9999999999999988
No 88
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.72 E-value=0.0002 Score=55.45 Aligned_cols=69 Identities=12% Similarity=0.262 Sum_probs=55.0
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-||++.|||..+ +++.|+.+|+.||+|..|.|+... .. +.-..-|||+|.
T Consensus 23 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~---------~~--------g~~~g~afV~f~ 75 (115)
T 2cpz_A 23 PEGANLFIYHLPQEF----------GDQDLLQMFMPFGNVVSAKVFIDK---------QT--------NLSKCFGFVSYD 75 (115)
T ss_dssp STTCCEEEESCCSSC----------CHHHHHHHHGGGSCCSEEEEEECS---------SS--------CSEEEEEEEECS
T ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEECC---------CC--------CCcCccEEEEEC
Confidence 344689999999765 578899999999999999985411 01 112346999999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 76 ---~~~~a~~A~~~l~g~~ 91 (115)
T 2cpz_A 76 ---NPVSAQAAIQSMNGFQ 91 (115)
T ss_dssp ---SHHHHHHHHHHHTTCE
T ss_pred ---CHHHHHHHHHHcCCCE
Confidence 9999999999999988
No 89
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.72 E-value=6e-05 Score=57.01 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=51.9
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
.-||++.|||..+ +++.|+.+|+.||+|..+.|+ . . ++ -|||+|.
T Consensus 27 ~~~l~V~nlp~~~----------~~~~l~~~f~~~G~i~~~~~~---------~--~---~g---------~afV~f~-- 71 (101)
T 2la4_A 27 VTTAYIGNIPHFA----------TEADLIPLFQNFGFILDFKHY---------P--E---KG---------CCFIKYD-- 71 (101)
T ss_dssp CCEEEEESCCTTC----------CHHHHHHHHHTTSCCSEEEEE---------T--T---TT---------EEEEECS--
T ss_pred CCEEEEcCCCccc----------CHHHHHHHHHhCCCEEEEEEe---------c--C---CC---------EEEEEEC--
Confidence 3589999999654 678899999999999999985 1 1 21 1899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 72 -~~~~A~~Ai~~l~g~~ 87 (101)
T 2la4_A 72 -THEQAAVCIVALANFP 87 (101)
T ss_dssp -SHHHHHHHHHHHTTCE
T ss_pred -CHHHHHHHHHHhCCCe
Confidence 9999999999999988
No 90
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.71 E-value=0.00076 Score=59.09 Aligned_cols=123 Identities=12% Similarity=0.111 Sum_probs=84.1
Q ss_pred HHHHhcCCCCcceeeeecCC-cceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCCCCCCchhHhhh
Q psy6597 61 KIKYWAQPEEFSSLKVTKST-LEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPTRHDWDSYFR 139 (305)
Q Consensus 61 kLk~~i~P~~fs~lkV~ksT-lefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dFPtrhdWdsfFr 139 (305)
.|+++...--...+++.++. --||.|+ +....+..++.|||..+ .|- .++|...
T Consensus 38 ~l~~~F~~~Gi~~~~~~~~~g~afV~f~----~~~~A~~A~~~l~~~~~--~g~--~i~v~~~----------------- 92 (284)
T 3smz_A 38 EVHDLLSDYELKYCFVDKYKGTAFVTLL----NGEQAEAAINAFHQSRL--RER--ELSVQLQ----------------- 92 (284)
T ss_dssp HHHHHTTTSCEEEEEEETTTTEEEEEES----SHHHHHHHHHHHTTCEE--TTE--ECEEEEC-----------------
T ss_pred HHHHHHHHcCCEEEEEecCCCEEEEEeC----CHHHHHHHHHHcCCCee--CCe--EEEEEec-----------------
Confidence 35555554335556664432 2378884 34446788889999874 453 3444321
Q ss_pred hcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCC
Q psy6597 140 DAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQ 219 (305)
Q Consensus 140 dak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~ 219 (305)
....+|++.|||..+ ++..|+.+|+.||.|..+.|+... ..+
T Consensus 93 -----------~~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~i~~~~i~~~~---------~~g-------- 134 (284)
T 3smz_A 93 -----------PTDALLCVANLPPSL----------TQQQFEELVRPFGSLERCFLVYSE---------RTG-------- 134 (284)
T ss_dssp -----------CCSCEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECT---------TTC--------
T ss_pred -----------CCCCEEEEcCCCCcC----------CHHHHHHHHHhcCCeeEEEEEeeC---------CCC--------
Confidence 122589999999655 688899999999999999984321 011
Q ss_pred ceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 220 SLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 220 ~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
.-.--+||+|. ...+-.+|++.|.|..
T Consensus 135 ~~~g~afV~f~---~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 135 QSKGYGFAEYM---KKDSAARAKSDLLGKP 161 (284)
T ss_dssp CEEEEEEEEES---SHHHHHHHHHHHTTCE
T ss_pred ccceEEEEEEC---CHHHHHHHHHHhCCCE
Confidence 11234899999 9999999999999987
No 91
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.71 E-value=0.00014 Score=56.26 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=51.3
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||-.+ ++.-|+.+|+.||+|..|.|+.... .+...+ -|||+|.
T Consensus 26 ~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~--------~g~~~g---------~afV~f~--- 75 (114)
T 2cq4_A 26 RTVFCMQLAARI----------RPRDLEDFFSAVGKVRDVRIISDRN--------SRRSKG---------IAYVEFC--- 75 (114)
T ss_dssp TEEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEECCSCC--------SSSCCC---------CEEEEES---
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhCCCEeEEEEEecCC--------CCccCc---------EEEEEeC---
Confidence 489999999654 6788999999999999999964211 011111 2899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|+ .|.|..
T Consensus 76 ~~~~a~~A~-~l~g~~ 90 (114)
T 2cq4_A 76 EIQSVPLAI-GLTGQR 90 (114)
T ss_dssp CGGGHHHHH-HHTTEE
T ss_pred cHHHHHHHH-HcCCCE
Confidence 999999999 999988
No 92
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.70 E-value=9.8e-05 Score=56.40 Aligned_cols=68 Identities=6% Similarity=0.055 Sum_probs=52.4
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCc-ceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGD-IREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~-IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
.-||++.|||..+ +++-|+.+|+.||. |..|.|+..|..- + ..++ -|||+|.
T Consensus 8 ~~~l~V~nLp~~~----------t~~~l~~~f~~~G~~v~~v~i~~~~~~~------g-~~~g---------~afV~f~- 60 (109)
T 2dis_A 8 NCRLFIGGIPKMK----------KREEILEEIAKVTEGVLDVIVYASAADK------M-KNRG---------FAFVEYE- 60 (109)
T ss_dssp SEEEEEECCCTTS----------CHHHHHHHHHHHSTTEEEEECCSSSCTT------T-TTCC---------EEEEEES-
T ss_pred CCEEEEeCCCCcC----------CHHHHHHHHHHhcCCceEEEEEccCCCC------C-CcCc---------EEEEEec-
Confidence 3589999999655 67889999999999 9999997544321 1 1121 2899999
Q ss_pred CCChhHHHHHHHHHh-C-CC
Q psy6597 232 GTDHVTMFIQVDIIS-G-MD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLr-G-mk 249 (305)
...+-.+|++.|. | ..
T Consensus 61 --~~~~A~~A~~~l~~g~~~ 78 (109)
T 2dis_A 61 --SHRAAAMARRKLMPGRIQ 78 (109)
T ss_dssp --SHHHHHHHHTTTTTCCSC
T ss_pred --CHHHHHHHHHHhhCCCce
Confidence 9999999999995 4 44
No 93
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=0.00012 Score=53.47 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=51.9
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-||++.|||..+ ++..|+.+|++||+|..+.|+. + ++ -|||+|.
T Consensus 10 ~~~~~l~V~~l~~~~----------t~~~l~~~f~~~G~i~~~~~~~---------~-----kg---------~afV~f~ 56 (85)
T 2ytc_A 10 KTITTLYVGGLGDTI----------TETDLRNHFYQFGEIRTITVVQ---------R-----QQ---------CAFIQFA 56 (85)
T ss_dssp SSCCCEEEECCTTTS----------CHHHHHHHHHTTSCEEEEEEEG---------G-----GT---------EEEEEES
T ss_pred CCccEEEEcCCCCCC----------CHHHHHHHHHhCCCEeEEEEEC---------C-----CC---------EEEEEEC
Confidence 445699999999553 6788999999999999999963 0 11 3899999
Q ss_pred CCCChhHHHHHHHHH-hCCC
Q psy6597 231 PGTDHVTMFIQVDII-SGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aL-rGmk 249 (305)
...+-.+|++.| .|..
T Consensus 57 ---~~~~A~~a~~~l~~~~~ 73 (85)
T 2ytc_A 57 ---TRQAAEVAAEKSFNKLI 73 (85)
T ss_dssp ---SHHHHHHHHHTTTTTCE
T ss_pred ---CHHHHHHHHHHhcCCee
Confidence 999999999998 7766
No 94
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.69 E-value=0.00015 Score=55.80 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=50.4
Q ss_pred CeEEeCCCccc-ccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 154 DTIYLSNLPVK-WFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 154 DTI~l~gLP~r-WFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
-||++.|||.. + +++-|+.+|++||+|..|.|+ ++ -|||+|.
T Consensus 28 ~~l~V~nl~~~~~----------t~~~l~~~F~~~G~v~~v~i~----------------~g---------~afV~f~-- 70 (110)
T 1wf1_A 28 SRVFIGNLNTALV----------KKSDVETIFSKYGRVAGCSVH----------------KG---------YAFVQYS-- 70 (110)
T ss_dssp SEEEECSCCCSSC----------CHHHHHHHHGGGSCCSEEEEE----------------TT---------EEEEECS--
T ss_pred cEEEEeCCCcccC----------CHHHHHHHHHhCCCeEEEEEe----------------CC---------EEEEEEC--
Confidence 59999999965 4 588899999999999999980 11 2899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 71 -~~~~A~~A~~~l~g~~ 86 (110)
T 1wf1_A 71 -NERHARAAVLGENGRV 86 (110)
T ss_dssp -SSHHHHHHHHHHTTCE
T ss_pred -CHHHHHHHHHHcCCCE
Confidence 9999999999999988
No 95
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.68 E-value=6.5e-05 Score=55.92 Aligned_cols=68 Identities=15% Similarity=0.032 Sum_probs=53.2
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
.+.||++.|||-.+ ++.-|+.+|+.||.|..+.++..+ ..+ .-.--|||+|.
T Consensus 14 ~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~~~~~~~~---------~~g--------~~~g~afV~f~- 65 (95)
T 2ek1_A 14 GPTVIKVQNMPFTV----------SIDEILDFFYGYQVIPGSVCLKYN---------EKG--------MPTGEAMVAFE- 65 (95)
T ss_dssp -CEEEEEECCCTTC----------CHHHHHHHTTTSCBCTTCCEEEEC---------TTS--------CEEEEEEEEES-
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHhcCCccceEEEEeC---------CCC--------CEeeEEEEEEC-
Confidence 35799999999654 678899999999999988875321 011 11234999999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 66 --~~~~a~~Ai~~l~g~~ 81 (95)
T 2ek1_A 66 --SRDEATAAVIDLNDRP 81 (95)
T ss_dssp --SHHHHHHHHHHHTTCE
T ss_pred --CHHHHHHHHHHhCCCe
Confidence 9999999999999988
No 96
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.67 E-value=7.1e-05 Score=57.69 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=53.3
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
+....-||++.|||..+ +++.|+.+|+.||.|..+.++.... . +.. ++ -|||+
T Consensus 21 ~~~~~~~l~V~nLp~~~----------t~~~l~~~f~~~G~v~~~~~~~~~~-----~--g~~-~g---------~afV~ 73 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRV----------TERDLVSLFARFQEKKGPPIQFRMM-----T--GRM-RG---------QAFIT 73 (115)
T ss_dssp CCSCCSEEEEECCCTTC----------CHHHHHHHTHHHHHSSSSCCEEEEE-----C--SSS-CS---------EEEEE
T ss_pred CCCCCCEEEEeCCCCCC----------CHHHHHHHHHHhCCccceEEEEEcC-----C--Ccc-ce---------EEEEE
Confidence 34455799999999554 6788999999999997665533111 1 111 11 38999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|++.|.|..
T Consensus 74 f~---~~~~a~~Ai~~l~g~~ 91 (115)
T 2cpx_A 74 FP---NKEIAWQALHLVNGYK 91 (115)
T ss_dssp CS---SHHHHHHHHHHSTTCB
T ss_pred EC---CHHHHHHHHHHhCCCE
Confidence 99 9999999999999988
No 97
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.66 E-value=0.00032 Score=57.18 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=63.3
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||+|.|||..+ ++.-|+.+|+.||+|..|.|+..- ..+ .-.--|||+|
T Consensus 36 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~---------~~~--------~~~g~afV~f 88 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYT----------TEEQIYELFSKSGDIKKIIMGLDK---------MKK--------TACGFCFVEY 88 (156)
T ss_dssp TTTCCEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECT---------TTC--------CEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecC---------CCC--------ccceEEEEEE
Confidence 3456799999999543 577899999999999999995411 011 1123489999
Q ss_pred cCCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEEec
Q psy6597 230 LPGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVVMC 278 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~~ 278 (305)
. ...+-.+|++.|.|.. | +| ..|.|.+.-..
T Consensus 89 ~---~~~~A~~Ai~~l~g~~----~-----~g------~~l~V~~a~~~ 119 (156)
T 1h2v_Z 89 Y---SRADAENAMRYINGTR----L-----DD------RIIRTDWDAGF 119 (156)
T ss_dssp S---SHHHHHHHHHHTTTSE----E-----TT------EECEEEEESCC
T ss_pred C---CHHHHHHHHHHhCCCE----E-----CC------eEEEEEECCCC
Confidence 9 9999999999999988 5 35 36777776554
No 98
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.66 E-value=0.00037 Score=52.53 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=55.6
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCccee--------ecCCCCCccccccccCCCCCccccCCCc
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIRE--------VDIPINDPYRAQMKPYISGMTLFSHAQS 220 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~--------vDIP~lDpyr~~m~~~~~~~~~fs~~~~ 220 (305)
+....-|||+.|||..+ +++-|+.+|++||.|.. +.|+..- ..+ .
T Consensus 9 ~~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~---------~~g--------~ 61 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENV----------TIESVADYFKQIGIIKTNKKTGQPMINLYTDR---------ETG--------K 61 (99)
T ss_dssp SCCCCSEEEEECCCSSC----------CHHHHHHHHTTTSCBCEETTTTEESEEEEECT---------TTC--------S
T ss_pred CCCCCCEEEEeCCCCCC----------CHHHHHHHHHHhCCEeeccccccccEEEEecC---------CCC--------C
Confidence 45567899999999764 67889999999999998 7774320 111 1
Q ss_pred eeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 221 LIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 221 l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
-.--|||+|. ...+-.+|++.|.|..
T Consensus 62 ~~G~afV~f~---~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 62 LKGEATVSFD---DPPSAKAAIDWFDGKE 87 (99)
T ss_dssp EEEEEEEEBS---SHHHHHHHHHHHTTCB
T ss_pred eeeEEEEEEC---CHHHHHHHHHHhCCCE
Confidence 1224999999 9999999999999998
No 99
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=0.00013 Score=54.98 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=51.7
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
.+..-||++.|||..+ ++..|+.+|+.||.|. ++|.. + ..++ -|||+|
T Consensus 16 ~~~~~~l~V~nL~~~~----------t~~~l~~~F~~~G~v~-~~~~~-----------~-~~~g---------~afV~f 63 (97)
T 2e5j_A 16 APLAADVYVGNLPRDA----------RVSDLKRALRELGSVP-LRLTW-----------Q-GPRR---------RAFLHY 63 (97)
T ss_dssp SCCCCEEEEECCCTTC----------CHHHHHHHHHHTTCCC-SEEEE-----------E-TTTT---------EEEEEC
T ss_pred CCCCCEEEEeCCCCcC----------cHHHHHHHHHhcCCEE-EEEEc-----------C-CCCc---------EEEEEE
Confidence 3456799999999654 6888999999999996 56542 1 1122 289999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 64 ~---~~~~a~~A~~~l~g~~ 80 (97)
T 2e5j_A 64 P---DSAAAQQAVSCLQGLR 80 (97)
T ss_dssp S---SHHHHHHHHHHHTTCC
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999998
No 100
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.65 E-value=0.00017 Score=55.87 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=53.6
Q ss_pred CCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEE
Q psy6597 148 KPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQL 227 (305)
Q Consensus 148 kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayV 227 (305)
......-||++.|||..+ +++.|+.+|++||+|..|.|+..- .. +. .. --|||
T Consensus 12 ~~~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~-----~~--~~-~~---------g~afV 64 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHT----------TDASLRKYFEGFGDIEEAVVITDR-----QT--GK-SR---------GYGFV 64 (116)
T ss_dssp CCSCSSSEEEEECCCSSC----------CHHHHHHHHHTTSCEEEEEESCCS-----SS--CC-CC---------SEEEE
T ss_pred cCCCCCCEEEEeCCCCCC----------CHHHHHHHHHhCCCeeEEEEEEcC-----CC--Cc-cc---------eEEEE
Confidence 345567799999999654 678899999999999999996421 00 11 11 14899
Q ss_pred eecCCCChhHHHHHHHHHhCCC
Q psy6597 228 GKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 228 Qy~~~~ey~~F~kAM~aLrGmk 249 (305)
+|. ...+-.+|++.|.| .
T Consensus 65 ~f~---~~~~a~~Ai~~~~~-~ 82 (116)
T 2cqd_A 65 TMA---DRAAAERACKDPNP-I 82 (116)
T ss_dssp EES---SHHHHHHHHTCSSC-E
T ss_pred EEC---CHHHHHHHHHhCCC-c
Confidence 999 99999999988776 5
No 101
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=0.00023 Score=53.93 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=54.9
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
....-||++.|||..+ ++..|+.+|+.||+|..|.|+..- ..+ .-.--|||+|
T Consensus 12 ~~~~~~l~V~nlp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~---------~~~--------~~~g~afV~f 64 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDT----------RETDLQELFRPFGSISRIYLAKDK---------TTG--------QSKGFAFISF 64 (103)
T ss_dssp CSSSEEEEEESCCTTC----------CHHHHHTTSTTTCCEEEEEEEECS---------SSC--------SEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhCCCeEEEEEeecC---------CCC--------ceeeEEEEEE
Confidence 4456789999999653 678899999999999999995311 011 1123499999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 65 ~---~~~~A~~A~~~l~g~~ 81 (103)
T 2cq0_A 65 H---RREDAARAIAGVSGFG 81 (103)
T ss_dssp S---SHHHHHHHHHHTTTCE
T ss_pred C---CHHHHHHHHHHcCCCe
Confidence 9 9999999999999988
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=8.9e-05 Score=59.58 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=52.6
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
....-+||+.|||-. -+|+-|+.+|+.||+|.+|.|+. + ++ -|||+|
T Consensus 13 ~~~~~~LfV~nLp~~----------vte~dL~~lF~~fG~V~~v~i~~-----------~---kG---------faFVeF 59 (105)
T 1sjq_A 13 GVPSRVIHIRKLPID----------VTEGEVISLGLPFGKVTNLLMLK-----------G---KN---------QAFIEM 59 (105)
T ss_dssp CCCCCEEEECSCCTT----------SCHHHHHHHHHHHCCEEEEEEET-----------T---TT---------EEEEEE
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEEc-----------C---CC---------EEEEEE
Confidence 455679999999954 37888999999999999999853 1 11 289999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
+ +..+-.+|++.|.|..
T Consensus 60 ~---~~~~A~~Ai~~l~~~~ 76 (105)
T 1sjq_A 60 N---TEEAANTMVNYYTSVT 76 (105)
T ss_dssp S---SHHHHHHHHHHHTTSC
T ss_pred C---CHHHHHHHHHHhccCC
Confidence 9 9999999999998753
No 103
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.63 E-value=0.00018 Score=54.38 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=52.8
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
.-||++.|||..+ ++.-|+.+|+.||+|..+.|+.. + ..+ .-.--|||+|.
T Consensus 8 ~~~l~V~nlp~~~----------~~~~l~~~f~~~G~i~~~~i~~~-~--------~~g--------~~~g~afV~f~-- 58 (104)
T 1p1t_A 8 LRSVFVGNIPYEA----------TEEQLKDIFSEVGPVVSFRLVYD-R--------ETG--------KPKGYGFCEYQ-- 58 (104)
T ss_dssp HSCEEEESCCTTS----------CHHHHHHHHHTTSCCSEEEEEEE-T--------TTT--------EEEEEEEEECS--
T ss_pred ccEEEEeCCCCcC----------CHHHHHHHHHhcCCeeEEEEEeC-C--------CCC--------ccceEEEEEEC--
Confidence 3589999999554 67889999999999999998531 0 011 11234899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 59 -~~~~a~~A~~~l~g~~ 74 (104)
T 1p1t_A 59 -DQETALSAMRNLNGRE 74 (104)
T ss_dssp -CHHHHHHHHHHSSSBS
T ss_pred -CHHHHHHHHHHhCCCe
Confidence 9999999999999988
No 104
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.61 E-value=5.5e-05 Score=58.88 Aligned_cols=71 Identities=11% Similarity=0.243 Sum_probs=54.0
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHH---HHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLR---RVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~---~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
...||++.|||-.+ +++-|+ .+|++||+|..|.|+....+.+. ..-.--|||+
T Consensus 14 ~~~~l~V~nLp~~~----------~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~--------------~~~~G~afV~ 69 (111)
T 2cpi_A 14 QKNLVFVVGLSQRL----------ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGS--------------QGPSASAYVT 69 (111)
T ss_dssp CSSCEEEEEECTTT----------CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSS--------------SCCCEEEEEE
T ss_pred CCCEEEEECCCCCC----------CHHHHHHHHHHhhccCCEEEEEEecCCCcCcc--------------CCCCeEEEEE
Confidence 35699999999654 344566 99999999999999654332211 0113459999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|+ ...+-.+|++.|.|..
T Consensus 70 f~---~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 70 YI---RSEDALRAIQCVNNVV 87 (111)
T ss_dssp ES---SHHHHHHHHHHHTTEE
T ss_pred EC---cHHHHHHHHHHhCCCE
Confidence 99 9999999999999988
No 105
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=97.61 E-value=0.0002 Score=58.06 Aligned_cols=65 Identities=22% Similarity=0.172 Sum_probs=54.1
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||-.+ ++.-|+.+|+.||+|..|.|+.. + ++ -|||+|
T Consensus 70 ~~~~~~l~V~nl~~~~----------t~~~l~~~F~~~G~i~~v~i~~~-----------~--~g---------~afV~f 117 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNG----------NKTELERAFGYYGPLRSVWVARN-----------P--PG---------FAFVEF 117 (150)
T ss_dssp STTSCEEEEESCCSCC----------SCHHHHHHHHHHSCEEEEEECSS-----------S--CS---------EEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhhCCEEEEEEeeC-----------C--Cc---------EEEEEE
Confidence 4556799999999643 45679999999999999999752 0 11 389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 118 ~---~~~~a~~A~~~l~g~~ 134 (150)
T 2i2y_A 118 E---DPRDAADAVRELDGRT 134 (150)
T ss_dssp S---SHHHHHHHHHHHSSSC
T ss_pred C---CHHHHHHHHHHcCCCE
Confidence 9 9999999999999988
No 106
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.61 E-value=0.00029 Score=56.13 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=54.8
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
....-||+|.|||..+ +++-|+.+|+.||+|..|.|+. +..++ .-.--|||.|
T Consensus 39 ~~~~~~l~V~nLp~~~----------~~~~l~~~F~~~G~i~~v~i~~---------~~~~~--------~~~g~afV~f 91 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTV----------DEVQLRQLFERYGPIESVKIVC---------DRETR--------QSRGYGFVKF 91 (139)
T ss_dssp TTTTSEEEEESCSTTC----------CHHHHHHHHHHHSCEEEEEEEE---------ETTTT--------EEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEE---------cCCCC--------CcceEEEEEE
Confidence 3445699999999654 6788999999999999999953 10111 1233589999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 92 ~---~~~~a~~A~~~l~g~~ 108 (139)
T 1u6f_A 92 Q---SGSSAQQAIAGLNGFN 108 (139)
T ss_dssp S---SHHHHHHHHHHTTTEE
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999987
No 107
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.60 E-value=7.9e-05 Score=58.60 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=50.8
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
..-+|++.|||-.+ ++..|+.+|++||+|..|.|+.. --|||+|+
T Consensus 15 ~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~v~~~~i~~~------------------------g~afV~f~- 59 (115)
T 3beg_B 15 SENRVVVSGLPPSG----------SWQDLKDHMREAGDVCYADVYRD------------------------GTGVVEFV- 59 (115)
T ss_dssp --CCEEEEECCSSC----------CTTHHHHHHGGGSCEEEEEECTT------------------------SEEEEEES-
T ss_pred CCcEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEecC------------------------CEEEEEEC-
Confidence 34789999999544 45669999999999999999542 13899999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
...+..+||+.|.|..
T Consensus 60 --~~~~a~~Ai~~l~g~~ 75 (115)
T 3beg_B 60 --RKEDMTYAVRKLDNTK 75 (115)
T ss_dssp --SHHHHHHHHHHHTTCB
T ss_pred --CHHHHHHHHHHhCCCE
Confidence 9999999999999998
No 108
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.58 E-value=0.00023 Score=55.14 Aligned_cols=70 Identities=11% Similarity=0.247 Sum_probs=54.4
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
....-||++.|||-.+ +++.|+.+|++||+|..|.|+.... . +. -.--+||+|
T Consensus 37 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~~~i~~~~~-----~--g~----------~~g~afV~f 89 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEF----------TDTDLASTFLPFGNVISAKVFIDKQ-----T--SL----------SKCFGFVSF 89 (118)
T ss_dssp CCCSEEEEEECSCTTC----------CHHHHHHHTTTSCEEEEEEECCCSS-----S--SC----------CCCEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEeCCC-----C--CC----------cCcEEEEEE
Confidence 3444689999999655 6788999999999999999964210 0 11 112479999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 90 ~---~~~~A~~A~~~l~g~~ 106 (118)
T 2khc_A 90 D---NPDSAQVAIKAMNGFQ 106 (118)
T ss_dssp E---SSHHHHHHHHHCCCCE
T ss_pred C---CHHHHHHHHHHcCCCE
Confidence 9 9999999999999988
No 109
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.57 E-value=0.0002 Score=53.68 Aligned_cols=70 Identities=14% Similarity=0.021 Sum_probs=54.6
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-+|++.|||-.+ ++.-|+.+|+.||.|..+.++..+ ..+ .-.--|||+|
T Consensus 12 ~~~~~~l~v~nLp~~~----------t~~~l~~~F~~~G~v~~~~~~~~~---------~~g--------~~~g~afV~f 64 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTV----------SIDEILDFFYGYQVIPGSVCLKYN---------EKG--------MPTGEAMVAF 64 (98)
T ss_dssp CCSSEEEEEESCCTTC----------CHHHHHHHTTTSCCCTTTCEEEEC---------SSS--------CEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHHcCCccceEEEEEC---------CCC--------CeeeEEEEEE
Confidence 4566789999999654 678899999999999887775321 011 1123599999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 65 ~---~~~~a~~Ai~~l~g~~ 81 (98)
T 2cqp_A 65 E---SRDEATAAVIDLNDRP 81 (98)
T ss_dssp S---CHHHHHHHHHHTTTCE
T ss_pred C---CHHHHHHHHHHhCCCe
Confidence 9 9999999999999988
No 110
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.57 E-value=7.9e-05 Score=60.94 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=49.6
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-+||+.|||-. -+|.-|+.+|+.||+|.+|.|+. + ++ -|||+|+
T Consensus 32 ~~LfVgNLp~~----------vte~dL~~lF~~fG~V~~v~i~~-----------~---kG---------~AFVeF~--- 75 (119)
T 2ad9_A 32 RVIHIRKLPID----------VTEGEVISLGLPFGKVTNLLMLK-----------G---KN---------QAFIEMN--- 75 (119)
T ss_dssp SEEEEESCCTT----------CCHHHHHHHHTTTSCCCEEEEEG-----------G---GT---------EEEEECS---
T ss_pred CEEEEeCCCCC----------CCHHHHHHHHHhcCCEEEEEEeC-----------C---CC---------EEEEEEC---
Confidence 47999999954 36888999999999999999853 1 11 2899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
+..+-.+|++.|.|..
T Consensus 76 ~~e~A~~Ai~~l~~~~ 91 (119)
T 2ad9_A 76 TEEAANTMVNYYTSVT 91 (119)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhccCC
Confidence 9999999999987643
No 111
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.55 E-value=0.00013 Score=54.66 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=54.2
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
.+-||++.|||-.+ +++-|+.+|+.||+|..|.|+.... . .|.+ .-.--|||+|.
T Consensus 4 ~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~-----~-~gt~--------~~~g~afV~f~- 58 (98)
T 2cpf_A 4 GSSGLFIKNLNFST----------TEETLKGVFSKVGAIKSCTISKKKN-----K-AGVL--------LSMGFGFVEYK- 58 (98)
T ss_dssp CCCCEEEESCCTTC----------CHHHHHHHHHTTSCEEEEEEEEEEC-----T-TCCE--------EEEEEEEEEES-
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCC-----C-CCCc--------CcccEEEEEEC-
Confidence 45689999999654 6788999999999999999854111 0 0110 12334999999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 59 --~~~~a~~A~~~l~g~~ 74 (98)
T 2cpf_A 59 --KPEQAQKALKQLQGHT 74 (98)
T ss_dssp --SHHHHHHHHHHSTTCE
T ss_pred --CHHHHHHHHHHhCCCe
Confidence 9999999999999988
No 112
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.54 E-value=0.0002 Score=57.17 Aligned_cols=68 Identities=13% Similarity=0.045 Sum_probs=52.0
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCccee--ecCCCCCccccccccCCCCCccccCCCceeEEEEE
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIRE--VDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQL 227 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~--vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayV 227 (305)
++...||++.|||-.| +|+-|+.+|++||.|.. |.|+.+- .+ + ..++ =+||
T Consensus 20 ~~~~~~lfV~nL~~~~----------te~~L~~~F~~~G~v~~~~v~i~~d~-----~t--g-~~rG---------~aFV 72 (131)
T 2m2b_A 20 ENANDTIILRNLNPHS----------TMDSILGALAPYAVLSSSNVRVIKDK-----QT--Q-LNRG---------FAFI 72 (131)
T ss_dssp SCCCCEEEECSCCTTC----------CSHHHHHHHGGGCCCCTTTEECCBCS-----SS--S-SBCS---------CEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHHhCCcceeeEEEEEcC-----CC--C-Ccce---------EEEE
Confidence 4567899999999765 46779999999999966 7786421 01 1 1122 2799
Q ss_pred eecCCCChhHHHHHHHHHhCC
Q psy6597 228 GKLPGTDHVTMFIQVDIISGM 248 (305)
Q Consensus 228 Qy~~~~ey~~F~kAM~aLrGm 248 (305)
+|. .. +-.+|++.|.|.
T Consensus 73 ~f~---~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 73 QLS---TI-EAAQLLQILQAL 89 (131)
T ss_dssp ECC---HH-HHHHHHHHHTTC
T ss_pred EEC---CH-HHHHHHHHhcCC
Confidence 999 99 999999999998
No 113
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.54 E-value=0.0003 Score=52.75 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=55.5
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcce-eecCCCCCccccccccCCCCCccccCCCceeEEEEE
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIR-EVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQL 227 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR-~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayV 227 (305)
+...+-||++.|||..+ ++..|+.+|+.||+|. .|.|+..- ..+ . -.--|||
T Consensus 5 ~~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~~v~i~~~~---------~~g-------~-~~g~afV 57 (99)
T 2div_A 5 SSGMAASLWMGDLEPYM----------DENFISRAFATMGETVMSVKIIRNR---------LTG-------I-PAGYCFV 57 (99)
T ss_dssp CCSSSSEEEECSCCTTC----------CHHHHHHHHHHTTCCCCEEEEEECS---------SSC-------C-EEEEEEE
T ss_pred CCCCccEEEEeCCCCCC----------CHHHHHHHHHHhCCcceEEEEeecC---------CCC-------C-cCCEEEE
Confidence 34567899999999765 6788999999999999 99985311 011 1 1123999
Q ss_pred eecCCCChhHHHHHHHHHhCCC
Q psy6597 228 GKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 228 Qy~~~~ey~~F~kAM~aLrGmk 249 (305)
+|. ...+-.+|++.|.|..
T Consensus 58 ~f~---~~~~a~~A~~~l~g~~ 76 (99)
T 2div_A 58 EFA---DLATAEKCLHKINGKP 76 (99)
T ss_dssp ECS---CHHHHHHHHHTTTTSE
T ss_pred EeC---CHHHHHHHHHHHcCCc
Confidence 999 9999999999999988
No 114
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.54 E-value=0.00034 Score=56.74 Aligned_cols=69 Identities=25% Similarity=0.249 Sum_probs=54.6
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-+|++.|||..+ ++.-|+.+|+.||+|..|.|+.+- ..+. .+ --|||+|.
T Consensus 68 ~~~~~l~v~nl~~~~----------~~~~l~~~F~~~G~v~~~~i~~~~-------~~g~-~~---------g~afV~f~ 120 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRT----------SPDTLRRVFEKYGRVGDVYIPRDR-------YTKE-SR---------GFAFVRFH 120 (158)
T ss_dssp CBCCEEEEESCCTTC----------CHHHHHHHHHHHSCEEEEECCCCS-------SCTT-SC---------CEEEEEES
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEeecC-------CCCc-cc---------eEEEEEEC
Confidence 446799999999654 678899999999999999996521 0011 11 13899999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 121 ---~~~~a~~A~~~l~g~~ 136 (158)
T 2kn4_A 121 ---DKRDAEDAMDAMDGAV 136 (158)
T ss_dssp ---BHHHHHHHHHHSTTEE
T ss_pred ---CHHHHHHHHHHhCCCE
Confidence 9999999999999987
No 115
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.53 E-value=0.00041 Score=53.37 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=53.3
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcce--------eecCCCCCccccccccCCCCCccccCCCcee
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIR--------EVDIPINDPYRAQMKPYISGMTLFSHAQSLI 222 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR--------~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~ 222 (305)
...-||++.|||..+ ++..|+.+|+.||.|. .|.|+..- . .+.. .
T Consensus 13 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-------~-~g~~---------~ 65 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSV----------TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDK-------E-TGKP---------K 65 (113)
T ss_dssp CCCCEEEEECCCTTC----------CHHHHHHHHTTTSCBCBCSSSCCBSEECCBCT-------T-TCSB---------C
T ss_pred CCCCEEEEcCCCCCC----------CHHHHHHHHHhcCCEeEccccCccCEEEEEeC-------C-CCCe---------e
Confidence 345699999999544 5778999999999999 68885420 0 0111 1
Q ss_pred EEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 223 FKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 223 FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
--|||+|. ...+-.+|++.|.|..
T Consensus 66 g~afV~f~---~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 66 GDATVSYE---DPPTAKAAVEWFDGKD 89 (113)
T ss_dssp SEEEEEBS---SHHHHHHHHHHHTTCE
T ss_pred eEEEEEEC---CHHHHHHHHHHcCCCc
Confidence 24899999 9999999999999988
No 116
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.51 E-value=0.00017 Score=56.32 Aligned_cols=66 Identities=8% Similarity=0.095 Sum_probs=52.0
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
.+-||++.|||..+ +++-|+..|+.||+|..|.||.... +...+| |||+|.
T Consensus 10 ~~~~lfV~~Lp~~~----------te~~L~~~F~~~G~v~~v~i~~d~~---------g~~rG~---------aFV~F~- 60 (103)
T 1s79_A 10 KNRSVYIKGFPTDA----------TLDDIKEWLEDKGQVLNIQMRRTLH---------KAFKGS---------IFVVFD- 60 (103)
T ss_dssp GGGCEEEECCCTTC----------CHHHHHHHHHTSSCEEEEEEECCCT---------TSCCCE---------EEEEES-
T ss_pred CCCEEEEECCCCCC----------CHHHHHHHHhhcCCEEEEEEEECCC---------CCCccE---------EEEEEC-
Confidence 34689999999754 6888999999999999999975321 111222 799999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++ +.|..
T Consensus 61 --~~e~a~~Ai~-~~~~~ 75 (103)
T 1s79_A 61 --SIESAKKFVE-TPGQK 75 (103)
T ss_dssp --SHHHHHHHHT-SSCCC
T ss_pred --CHHHHHHHHH-cCCCE
Confidence 9999999998 77777
No 117
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=97.50 E-value=0.00026 Score=57.13 Aligned_cols=70 Identities=19% Similarity=0.107 Sum_probs=54.1
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
....-||+|.|||... ++..|+.+|++||+|..|.|+.... . +. . .--|||+|
T Consensus 43 ~~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~I~~v~i~~d~~-----t--g~-~---------~G~afV~F 95 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYT----------TERDLREVFSKYGPIADVSIVYDQQ-----S--RR-S---------RGFAFVYF 95 (129)
T ss_dssp CCCSSCBCEETCTTSC----------CHHHHHHHHTTTSCEEEEEEECCSS-----S--SC-C---------CCEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCC-----C--Cc-c---------ceEEEEEE
Confidence 3444589999999653 6778999999999999999964210 0 11 1 12489999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 96 ~---~~~~A~~Ai~~lng~~ 112 (129)
T 2kxn_B 96 E---NVDDAKEAKERANGME 112 (129)
T ss_dssp S---CHHHHHHHHHHHTTCC
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999988
No 118
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=0.00033 Score=53.02 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=52.7
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhc-cCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQN-YGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~-FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...-||++.|||..+ +++-|+.+|+. ||+|..|.|+... . +. -.--|||+|
T Consensus 7 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~~G~v~~v~i~~~~------~--g~----------~~g~afV~f 58 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDV----------DDGMLYEFFVKVYPSCRGGKVVLDQ------T--GV----------SKGYGFVKF 58 (104)
T ss_dssp SCCCCEEEECCCTTC----------CHHHHHHHHHHHCTTEEEEEEEECT------T--CC----------EEEEEEEEE
T ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHHHHhCCCeEEEEEEECC------C--CC----------ccceEEEEE
Confidence 344689999999654 67889999999 9999999995421 1 11 112389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 59 ~---~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 59 T---DELEQKRALTECQGAV 75 (104)
T ss_dssp S---CHHHHHHHHHHTTTCC
T ss_pred C---CHHHHHHHHHHccCCc
Confidence 9 9999999999988755
No 119
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.50 E-value=9.9e-05 Score=59.78 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=56.5
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-+||+.|||-. .-+|.-|+.+|+.||+|.+|.|. . . ++ -|||+|+
T Consensus 26 ~~l~V~NLp~~---------~~te~~L~~lF~~fG~V~~v~i~---------~--~---kg---------~aFVef~--- 70 (112)
T 1x4f_A 26 RVIHLSNLPHS---------GYSDSAVLKLAEPYGKIKNYILM---------R--M---KS---------QAFIEME--- 70 (112)
T ss_dssp CEEEEESCCCS---------SCCSHHHHTTTTTTSCCSEEEEE---------T--T---TT---------EEEEECS---
T ss_pred CEEEEeCCCCc---------cCCHHHHHHHHHhcCCEEEEEEe---------c--C---CC---------EEEEEEC---
Confidence 38999999953 13566799999999999999993 1 1 11 2999999
Q ss_pred ChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEE
Q psy6597 234 DHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYV 275 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~ 275 (305)
+..+-.+|++.|.|.. +.. +| +.|.|+|.
T Consensus 71 ~~~~A~~Ai~~l~~~~----~~l---~G------r~l~V~~a 99 (112)
T 1x4f_A 71 TREDAMAMVDHCLKKA----LWF---QG------RCVKVDLS 99 (112)
T ss_dssp SHHHHHHHHHHHHHSC----CCS---SS------SCCEEEEE
T ss_pred CHHHHHHHHHHhccCC----ceE---CC------EEEEEEEC
Confidence 9999999999998765 322 35 36777765
No 120
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.50 E-value=0.00019 Score=51.18 Aligned_cols=64 Identities=11% Similarity=0.229 Sum_probs=48.5
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
||++.|||..+ +++-|+.+|+.||+|..+.|+.... . +. ..+ -|||+|. .
T Consensus 1 ~l~v~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~-----~--~~-~~g---------~afV~f~---~ 50 (75)
T 1iqt_A 1 KIFVGGLSPDT----------PEEKIREYFGGFGEVESIELPMDNK-----T--NK-RRG---------FCFITFK---E 50 (75)
T ss_dssp CEEESCCCSSC----------CHHHHHHHHHHHSCCSEECCCCSCC-----C--SS-SCC---------CEEEECS---S
T ss_pred CEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEecCC-----C--CC-cCC---------EEEEEEC---C
Confidence 68999999764 6788999999999999999975211 0 11 121 2899999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
..+-.+|++. .|..
T Consensus 51 ~~~a~~Ai~~-~~~~ 64 (75)
T 1iqt_A 51 EEPVKKIMEK-KYHN 64 (75)
T ss_dssp SHHHHHHHTT-SSCC
T ss_pred HHHHHHHHHh-CCCe
Confidence 9999999984 5555
No 121
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=97.49 E-value=0.00034 Score=54.46 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
..+.+-||++.|||..+ ++.-|+.+|+.||+|..|.|+.. + . .+..++ -|||+
T Consensus 21 ~~~~~~~lfV~nLp~~~----------te~~L~~~F~~~G~i~~v~i~~~-~------~-tg~~kg---------~afV~ 73 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQT----------TQEGLREYFGQFGEVKECLVMRD-P------L-TKRSRG---------FGFVT 73 (109)
T ss_dssp -----CCEEEESCCTTC----------CHHHHHHHHTTTSCEEEEEECCC-T------T-TCCCTT---------CEEEE
T ss_pred cCCCCCEEEEeCCCCCC----------CHHHHHHHHHccCCeEEEEEEEC-C------C-CCCcCc---------EEEEE
Confidence 45677899999999765 67889999999999999999652 1 0 111121 37999
Q ss_pred ecCCCChhHHHHHHHHH
Q psy6597 229 KLPGTDHVTMFIQVDII 245 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aL 245 (305)
|. ...+-.+|++.+
T Consensus 74 f~---~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 74 FM---DQAGVDKVLAQS 87 (109)
T ss_dssp ES---SHHHHHHHHHSS
T ss_pred EC---CHHHHHHHHHHC
Confidence 99 999999999865
No 122
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.48 E-value=0.00053 Score=56.78 Aligned_cols=66 Identities=12% Similarity=0.271 Sum_probs=52.5
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||+|.|||..+ ++..|+.+|+.||+|..|.|+..- ..+ .-.--|||+|.
T Consensus 73 ~~l~V~nLp~~~----------t~~~L~~~F~~~G~i~~v~i~~~~---------~~g--------~~~g~afV~f~--- 122 (165)
T 1rk8_A 73 WILFVTSIHEEA----------QEDEIQEKFCDYGEIKNIHLNLDR---------RTG--------FSKGYALVEYE--- 122 (165)
T ss_dssp EEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEECT---------TTS--------SEEEEEEEEES---
T ss_pred CEEEEeCCCCCC----------CHHHHHHHhhcCCCEEEEEEEecC---------CCC--------cEeeEEEEEEC---
Confidence 379999999754 678899999999999999995311 011 11224899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|+++|.|..
T Consensus 123 ~~~~A~~Ai~~l~g~~ 138 (165)
T 1rk8_A 123 THKQALAAKEALNGAE 138 (165)
T ss_dssp SHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHhCCCE
Confidence 9999999999999988
No 123
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.47 E-value=0.00047 Score=50.45 Aligned_cols=65 Identities=14% Similarity=0.071 Sum_probs=51.1
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||..+ ++.-|+..|+.||+|..+.|+.. + .++. -.--|||+|.
T Consensus 7 ~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~-~------~~~~----------~~g~afV~f~--- 56 (89)
T 3ucg_A 7 RSIYVGNVDYGA----------TAEELEAHFHGCGSVNRVTILCD-K------FSGH----------PKGFAYIEFS--- 56 (89)
T ss_dssp TEEEEESCCTTC----------CHHHHHHHHGGGCCEEEEEEEES-C------SSSS----------CCEEEEEEES---
T ss_pred CEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEEec-C------CCCC----------cceEEEEEEC---
Confidence 489999999654 67889999999999999999631 1 0011 1224999999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|+ .|.|..
T Consensus 57 ~~~~a~~a~-~~~g~~ 71 (89)
T 3ucg_A 57 DKESVRTSL-ALDESL 71 (89)
T ss_dssp STHHHHHHG-GGTTCE
T ss_pred CHHHHHHHH-hcCCCE
Confidence 999999999 999988
No 124
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00024 Score=56.13 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=52.3
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
||++.|||..+ ++.-|+..|++||+|.+|.|+... .+. -.--|||+|. .
T Consensus 2 ~l~V~nlp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~---------~~~---------~~g~afV~f~---~ 50 (166)
T 3md3_A 2 VLYVGNLDKAI----------TEDILKQYFQVGGPIANIKIMIDK---------NNK---------NVNYAFVEYH---Q 50 (166)
T ss_dssp EEEEEEEETTC----------CHHHHHHHHGGGSCEEEEEEECCC---------C-C---------CEEEEEEEES---S
T ss_pred EEEECCCCCcC----------CHHHHHHHHHhcCCeEEEEEEECC---------CCC---------CCCEEEEEeC---C
Confidence 79999999665 578899999999999999996421 011 1235899999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
..+-.+|++.|.|..
T Consensus 51 ~~~a~~A~~~l~~~~ 65 (166)
T 3md3_A 51 SHDANIALQTLNGKQ 65 (166)
T ss_dssp HHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHcCCCc
Confidence 999999999999987
No 125
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.47 E-value=0.00036 Score=60.42 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=51.3
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
.=+|++.|||. .-+|+.|+++|++||+|..|.|.. + . --+-|||+|+
T Consensus 46 vl~l~VgNL~~----------~vted~L~~~Fs~fG~V~~V~i~~-----k------~----------~rgfAFVeF~-- 92 (164)
T 1sjr_A 46 VLRIIVENLFY----------PVTLDVLHQIFSKFGTVLKIITFT-----K------N----------NQFQALLQYA-- 92 (164)
T ss_dssp EEEEEECSCCS----------CCCHHHHHHHHHHHSCEEEEEEEE-----S------S----------SCEEEEEEES--
T ss_pred eEEEEEeCcCC----------CCCHHHHHHHHHhcCCEEEEEEEe-----C------C----------CCCEEEEEEC--
Confidence 34577899973 357889999999999999999931 1 0 0246899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
+-.+-.+|+++|.|..
T Consensus 93 -d~~~A~~Ai~~LnG~~ 108 (164)
T 1sjr_A 93 -DPVSAQHAKLSLDGQN 108 (164)
T ss_dssp -CHHHHHHHHHHSTTBC
T ss_pred -CHHHHHHHHHHhCCCE
Confidence 9999999999999999
No 126
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.47 E-value=0.00027 Score=56.53 Aligned_cols=67 Identities=16% Similarity=0.341 Sum_probs=52.8
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
||++.|||..| ++..|+..|+.||+|..+.|+.. . .++ .+.-.--|||+|. .
T Consensus 5 ~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~-----~----~~~------~~~~~g~afV~f~---~ 56 (175)
T 3nmr_A 5 KMFVGQVPRTW----------SEKDLRELFEQYGAVYEINVLRD-----R----SQN------PPQSKGCCFVTFY---T 56 (175)
T ss_dssp EEEEESCCTTC----------CHHHHHHHHHTTSCEEEEEEEEE-----C----SSS------SCEEEEEEEEEES---S
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEEec-----C----CCC------CCCcceEEEEEEC---C
Confidence 89999999765 68889999999999999998531 0 111 0012345899999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
..+-.+|++.|.|+.
T Consensus 57 ~~~A~~A~~~l~~~~ 71 (175)
T 3nmr_A 57 RKAALEAQNALHNMK 71 (175)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcCcE
Confidence 999999999999988
No 127
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.47 E-value=0.00044 Score=56.37 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=58.3
Q ss_pred CeEEe--CCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 154 DTIYL--SNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 154 DTI~l--~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
-+|++ -|||... +|+.|+.+|++||+|.+|.||. +.+ | +||+|+
T Consensus 26 ~~L~V~Ng~L~~~~----------te~~L~~~F~~fG~v~~v~i~~-----------~rg---f---------aFV~f~- 71 (114)
T 2cq2_A 26 QSLVVANGGLGNGV----------SRNQLLPVLEKCGLVDALLMPP-----------NKP---Y---------SFARYR- 71 (114)
T ss_dssp SEEEEETCTGGGTC----------CHHHHHHHHHHHSCEEEEECCT-----------TCS---C---------EEEEES-
T ss_pred CEEEEECCCCCCCC----------CHHHHHHHHHhcCCeEEEEEeC-----------CCC---E---------EEEEEC-
Confidence 46999 6698644 6888999999999999999863 111 1 799999
Q ss_pred CCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEE
Q psy6597 232 GTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYV 275 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~ 275 (305)
+..+-.+|+++|.|+. |. .. .|+...+.|+|.
T Consensus 72 --~~~~A~~Ai~~lnG~~----~~-~~-----lg~g~~l~v~~a 103 (114)
T 2cq2_A 72 --TTEESKRAYVTLNGKE----VV-DD-----LGQKITLYLNFV 103 (114)
T ss_dssp --SHHHHHHHHHHTTTCE----EE-CT-----TSCEEECEEEEE
T ss_pred --CHHHHHHHHHHhCCCE----Ec-cc-----cCCCcEEEEEec
Confidence 9999999999999998 51 11 112357788875
No 128
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.46 E-value=0.00041 Score=55.50 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=53.4
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccC-cceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYG-DIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG-~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
....-+|++.|||-. -++.-|+.+|+.|| +|..++|+..+ . .+ -|||+
T Consensus 25 p~~~~~l~VgnLp~~----------~te~dL~~~F~~~G~~v~~v~i~~~~---------~---rG---------faFV~ 73 (111)
T 2jvr_A 25 PAKRYRITMKNLPEG----------CSWQDLKDLARENSLETTFSSVNTRD---------F---DG---------TGALE 73 (111)
T ss_dssp CCCCEEEEEECSSCC----------CCHHHHHHHHHHHTCCCSEEECSSCS---------S---SC---------CEEEE
T ss_pred CCCCCEEEEECCCCC----------CCHHHHHHHHHHhCCeeEEEEEEcCC---------C---CC---------EEEEE
Confidence 344569999999954 36788999999999 99999996421 1 11 28999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|+ ...+..+|++.|.|..
T Consensus 74 F~---~~e~A~~Ai~~lng~~ 91 (111)
T 2jvr_A 74 FP---SEEILVEALERLNNIE 91 (111)
T ss_dssp ES---SHHHHHHHHHHTTTEE
T ss_pred EC---CHHHHHHHHHHcCCCE
Confidence 99 9999999999999988
No 129
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.46 E-value=0.00025 Score=52.90 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=49.5
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccC--cceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYG--DIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG--~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
||++.|||-.+ +++-|+.+|+.|| +|..+.|+.+- .++ .-.--|||+|.
T Consensus 3 ~l~V~nL~~~~----------t~~~l~~~F~~~G~~~v~~v~i~~~~---------~~g--------~~kG~afV~f~-- 53 (90)
T 3p5t_L 3 ALYIGNLTWWT----------TDEDLTEAVHSLGVNDILEIKFFENR---------ANG--------QSKGFALVGVG-- 53 (90)
T ss_dssp -CEEESCCTTC----------CHHHHHHHHHTTTCCCCCCEEEEECT---------TTC--------CEEEEEEECC---
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHHhCCCceEEEEEEecC---------CCC--------ccCcEEEEEEC--
Confidence 68999998543 6788999999999 99999885411 011 11234899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 54 -~~~~a~~Ai~~l~g~~ 69 (90)
T 3p5t_L 54 -SEASSKKLMDLLPKRE 69 (90)
T ss_dssp -CHHHHHHHHHHGGGSC
T ss_pred -CHHHHHHHHHHcCCCe
Confidence 9999999999999998
No 130
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.46 E-value=0.00026 Score=55.97 Aligned_cols=66 Identities=15% Similarity=0.318 Sum_probs=52.3
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||-.+ ++.-|+..|+.||+|..+.|+..- ..+ .-.--|||+|.
T Consensus 3 ~~l~v~nlp~~~----------~~~~l~~~f~~~G~i~~v~~~~~~---------~~~--------~~~g~afV~f~--- 52 (167)
T 1fxl_A 3 TNLIVNYLPQNM----------TQEEFRSLFGSIGEIESCKLVRDK---------ITG--------QSLGYGFVNYI--- 52 (167)
T ss_dssp SEEEEESCCTTC----------CHHHHHHHHHTTSCEEEEEEEECT---------TTC--------CEEEEEEEEES---
T ss_pred ceEEEcCCCCCC----------CHHHHHHHHHhcCCeEEEEEEeCC---------CCC--------cceeEEEEEEC---
Confidence 489999999765 578899999999999999984310 011 11234899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 53 ~~~~A~~a~~~l~~~~ 68 (167)
T 1fxl_A 53 DPKDAEKAINTLNGLR 68 (167)
T ss_dssp SHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHcCCCc
Confidence 9999999999999987
No 131
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.45 E-value=0.00017 Score=53.89 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=50.8
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
.+.+-||++.|||..+ ++.-|+.+|+.||.|+.+ +. . +. -.--|||+|
T Consensus 13 ~~~~~~l~V~nL~~~~----------t~~~l~~~F~~~g~v~~~--------~~--~---~~---------~~g~afV~f 60 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNI----------TEDELKEVFEDALEIRLV--------SQ--D---GK---------SKGIAYIEF 60 (96)
T ss_dssp TTGGGEEEEESCCSSC----------CHHHHHHHHCSEEEECCE--------EE--T---TE---------EEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHhhCCcEEEe--------CC--C---CC---------cceEEEEEE
Confidence 4456799999999654 678899999999999866 11 0 11 122499999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++.|.|..
T Consensus 61 ~---~~~~a~~A~~~l~g~~ 77 (96)
T 1fjc_A 61 K---SEADAEKNLEEKQGAE 77 (96)
T ss_dssp S---SHHHHHHHHHHTTEEE
T ss_pred C---CHHHHHHHHHHhCCCE
Confidence 9 9999999999999977
No 132
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.43 E-value=7e-05 Score=56.72 Aligned_cols=61 Identities=21% Similarity=0.341 Sum_probs=47.9
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
.+-||++.|||..+ +++.|+.+|+.||.|..+.|+... . +. -.--|||+|.
T Consensus 8 ~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~------~--g~----------~~g~afV~f~- 58 (102)
T 2xs2_A 8 MPNTVFVGGIDVRM----------DETEIRSFFARYGSVKEVKIITDR------T--GV----------SKGYGFVSFY- 58 (102)
T ss_dssp EEEEEEEECCCTTC----------CHHHHHHHHGGGSCEEEEEEEECT------T--SC----------EEEEEEEEES-
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHhCCCeEEEEEEECC------C--CC----------ccceEEEEEC-
Confidence 45689999999655 678899999999999999996431 0 11 1224899999
Q ss_pred CCChhHHHHHHH
Q psy6597 232 GTDHVTMFIQVD 243 (305)
Q Consensus 232 ~~ey~~F~kAM~ 243 (305)
...+-.+|++
T Consensus 59 --~~~~a~~Ai~ 68 (102)
T 2xs2_A 59 --NDVDVQKIVE 68 (102)
T ss_dssp --SCCCHHHHTT
T ss_pred --CHHHHHHHHh
Confidence 9999999998
No 133
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.43 E-value=0.00048 Score=55.12 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=50.7
Q ss_pred CCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEE
Q psy6597 146 EMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKT 225 (305)
Q Consensus 146 E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Fea 225 (305)
+..+...--||++.||. -++..|+.+|+.||+|..|.|+ . . ++ -|
T Consensus 32 ~~~~~~~~~~lfVgnl~------------~te~~L~~~F~~~G~I~~v~i~---------~--~---kg---------~a 76 (121)
T 2bz2_A 32 ERRAPRKGNTLYVYGED------------MTPTLLRGAFSPFGNIIDLSMD---------P--P---RN---------CA 76 (121)
T ss_dssp ---CCCCCCEEEEECSS------------CCHHHHHHHHSTTCCCSCEEEE---------T--T---TT---------EE
T ss_pred CCCCCCCCCEEEEcCCC------------CCHHHHHHHHHccCCEEEEEEe---------C--C---CC---------EE
Confidence 33333445689999841 3578899999999999999984 1 1 21 28
Q ss_pred EEeecCCCChhHHHHHHHHHhCCC
Q psy6597 226 QLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 226 yVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
||+|. ...+-.+|++.|.|..
T Consensus 77 FV~f~---~~~~A~~Ai~~lng~~ 97 (121)
T 2bz2_A 77 FVTYE---KMESADQAVAELNGTQ 97 (121)
T ss_dssp EEECS---SHHHHHHHHHHHTTCB
T ss_pred EEEEC---CHHHHHHHHHHhCCCE
Confidence 99999 9999999999999998
No 134
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=97.42 E-value=0.00023 Score=57.74 Aligned_cols=67 Identities=24% Similarity=0.256 Sum_probs=52.6
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
.-||++.|||..+ ++.-|+.+|+.||+|..|.|+.... .+..+ --|||+|.
T Consensus 47 ~~~l~V~nLp~~~----------te~~L~~~F~~~G~i~~v~i~~~~~--------~g~~~---------G~afV~F~-- 97 (135)
T 2lea_A 47 MTSLKVDNLTYRT----------SPDTLRRVFEKYGRVGDVYIPRDRY--------TKESR---------GFAFVRFH-- 97 (135)
T ss_dssp CCCEEEECCCSSC----------HHHHHHHHHGGGSCCSEEECCCCSS--------SSSCC---------SCCEEECS--
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEecCC--------CCccc---------eEEEEEEC--
Confidence 4589999999653 6788999999999999999964211 01111 13799999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 98 -~~~~A~~Ai~~l~g~~ 113 (135)
T 2lea_A 98 -DKRDAEDAMDAMDGAV 113 (135)
T ss_dssp -CHHHHHHHHTTTTTCC
T ss_pred -CHHHHHHHHHHcCCCE
Confidence 9999999999999988
No 135
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.41 E-value=0.00025 Score=58.01 Aligned_cols=67 Identities=21% Similarity=0.150 Sum_probs=51.5
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
...+|++.|||-.+ ++.-|+.+|+.||.|..|.|+... ..+ .-.--|||+|.
T Consensus 103 ~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~---------~~g--------~~~g~afV~F~- 154 (196)
T 1l3k_A 103 TVKKIFVGGIKEDT----------EEHHLRDYFEQYGKIEVIEIMTDR---------GSG--------KKRGFAFVTFD- 154 (196)
T ss_dssp CCSEEEEECCTTTC----------CHHHHHHHHTTTSCEEEEEEEECT---------TTC--------CEEEEEEEEES-
T ss_pred CcceEEEeCCCCCC----------CHHHHHHHHhcCCCeEEEEEeecC---------CCC--------CccceEEEEEC-
Confidence 44799999999764 688899999999999999995421 011 11335899999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++. .|..
T Consensus 155 --~~~~A~~A~~~-~~~~ 169 (196)
T 1l3k_A 155 --DHDSVDKIVIQ-KYHT 169 (196)
T ss_dssp --SHHHHHHHHHC-SCCE
T ss_pred --CHHHHHHHHHh-CCcE
Confidence 99999999986 4655
No 136
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=97.41 E-value=0.00042 Score=59.91 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=50.7
Q ss_pred CeEEeCCCc-ccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 154 DTIYLSNLP-VKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 154 DTI~l~gLP-~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
-||++.||| -. -++..|+.+|+.||.|..|.|+.. + ++| |||+|.
T Consensus 5 ~~l~V~nL~~~~----------~~~~~L~~~F~~~G~v~~v~i~~~-----------~--~g~---------afV~f~-- 50 (205)
T 3tyt_A 5 PVLMVYGLDQSK----------MNCDRVFNVFCLYGNVEKVKFMKS-----------K--PGA---------AMVEMA-- 50 (205)
T ss_dssp SEEEEECCCTTT----------CCHHHHHHHHTTTSCEEEEEECTT-----------S--TTC---------EEEEES--
T ss_pred CEEEEeCCCccc----------CCHHHHHHHHHhcCCeEEEEEecC-----------C--CCE---------EEEEEC--
Confidence 389999998 33 367789999999999999999531 0 111 899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
+..+-.+|++.|.|+.
T Consensus 51 -~~~~A~~Ai~~lng~~ 66 (205)
T 3tyt_A 51 -DGYAVDRAITHLNNNF 66 (205)
T ss_dssp -SHHHHHHHHHHHTTCE
T ss_pred -CHHHHHHHHHHhCCCE
Confidence 9999999999999998
No 137
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=0.0008 Score=50.68 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=52.4
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhcc--CcceeecCCCCCccccccccCCCCCccccCCCceeEEEEE
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNY--GDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQL 227 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~F--G~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayV 227 (305)
....-||++.|||-.+ ++..|+.+|+.| |+|..|.++ . + -|||
T Consensus 12 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~g~g~v~~~~~~---------~----g------------~afV 56 (99)
T 2cpd_A 12 MSSVKILYVRNLMLST----------SEEMIEKEFNNIKPGAVERVKKI---------R----D------------YAFV 56 (99)
T ss_dssp SSCCCEEEEESCCTTC----------CHHHHHHHHHTTSTTCEEEEEEC---------S----S------------EEEE
T ss_pred cCCcCEEEEeCCCCCC----------CHHHHHHHHHhcCCcceEEEEEe---------C----C------------eEEE
Confidence 3445699999999654 678899999999 999998874 1 1 4999
Q ss_pred eecCCCChhHHHHHHHHHhCCC
Q psy6597 228 GKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 228 Qy~~~~ey~~F~kAM~aLrGmk 249 (305)
+|. ...+-.+|++.|.|..
T Consensus 57 ~f~---~~~~A~~A~~~l~g~~ 75 (99)
T 2cpd_A 57 HFS---NREDAVEAMKALNGKV 75 (99)
T ss_dssp EES---SHHHHHHHHHHHSSEE
T ss_pred EeC---CHHHHHHHHHHhCCCE
Confidence 999 9999999999999988
No 138
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=0.00049 Score=51.17 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=51.0
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCc-ceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGD-IREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~-IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
...+-||++.|||-.+ +++.|+.+|+.||. |..+.|. . ++ -|||+
T Consensus 5 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~vv~~~~~~---------~------~g---------~afV~ 50 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAV----------TADDLRQLFGDRKLPLAGQVLL---------K------SG---------YAFVD 50 (93)
T ss_dssp CCCCCCEEEECCCTTC----------CHHHHHHHHHHTTCCCSSCEEE---------E------TT---------EEEEC
T ss_pred CCCCcEEEEeCCCCCC----------CHHHHHHHHHHcCCceEEEEEc---------C------CC---------EEEEE
Confidence 4556799999999653 68889999999999 7766661 1 11 28999
Q ss_pred ecCCCChhHHHHHHHHHhC-CC
Q psy6597 229 KLPGTDHVTMFIQVDIISG-MD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrG-mk 249 (305)
|. ...+-.+|++.|.| ..
T Consensus 51 f~---~~~~A~~A~~~l~g~~~ 69 (93)
T 2cqh_A 51 YP---DQNWAIRAIETLSGKVE 69 (93)
T ss_dssp CS---CHHHHHHHHHHHTTTCE
T ss_pred EC---CHHHHHHHHHHccCCee
Confidence 99 99999999999999 66
No 139
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.39 E-value=0.00053 Score=58.35 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=61.8
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-||+|.|||-.+ ++.-|+.+|+.||+|..|.|+... . +. ..+ -|||+|.
T Consensus 86 ~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~I~~v~i~~d~------~--g~-~kG---------~afV~F~ 137 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGV----------SDADIQELFAEFGTLKKAAVDYDR------S--GR-SLG---------TADVHFE 137 (177)
T ss_dssp TTCEEEEEECCCSCC----------CHHHHHHHHHHTSCCSEEEECCCT------T--SS-CSC---------CEEEEES
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEEECC------C--CC-Eee---------EEEEEeC
Confidence 334589999999654 678899999999999999996531 1 11 111 2899999
Q ss_pred CCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEEec
Q psy6597 231 PGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVVMC 278 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~~ 278 (305)
...+-.+|++.|.|.. | +| ..|.|.|....
T Consensus 138 ---~~~~A~~Ai~~lng~~----l-----~G------r~l~V~~a~~~ 167 (177)
T 2f3j_A 138 ---RRADALKAMKQYKGVP----L-----DG------RPMDIQLVASQ 167 (177)
T ss_dssp ---CHHHHHHHHHHSTTCB----C-----SS------SBCEEEEESSG
T ss_pred ---CHHHHHHHHHHhCCCE----E-----CC------EEEEEEEecCC
Confidence 9999999999999988 5 25 36777776543
No 140
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.39 E-value=0.00036 Score=54.45 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=53.2
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
+..+-||++.|||-.+ ++.-|+.+|++||+|. +.++....-+. .+..++ -|||+|
T Consensus 5 ~~~~~~lfVgnLp~~~----------te~~L~~~F~~~G~i~-~~~~~~~~~~~-----~g~~~G---------~aFV~f 59 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDI----------DEDEITASFRRFGPLV-VDWPHKAESKS-----YFPPKG---------YAFLLF 59 (114)
T ss_dssp SSCCCCEEEECCCTTC----------CHHHHHHHTTTTCCCC-EECTTSSSSCC-----CSCTTS---------EEEECC
T ss_pred CCCCCEEEEcCCCCCC----------CHHHHHHHHHhcCCEE-EEEeecCCCCC-----CCCccc---------EEEEEE
Confidence 4556799999999665 6888999999999999 77765322110 011121 299999
Q ss_pred cCCCChhHHHHHHHHH---hCCC
Q psy6597 230 LPGTDHVTMFIQVDII---SGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aL---rGmk 249 (305)
+ ...+-.+|+++| .|+.
T Consensus 60 ~---~~~~a~~Ai~~~~~~~G~~ 79 (114)
T 2dnl_A 60 Q---EESSVQALIDACLEEDGKL 79 (114)
T ss_dssp S---SHHHHHHHHHHSEEETTEE
T ss_pred C---CHHHHHHHHHhhhhcCCcE
Confidence 9 999999999998 6665
No 141
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.37 E-value=0.00043 Score=56.83 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=49.1
Q ss_pred EEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCCh
Q psy6597 156 IYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDH 235 (305)
Q Consensus 156 I~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey 235 (305)
|++.|||. .-+++.|+.+|++||+|..|.|.. | . -|.|||+|. +-
T Consensus 28 l~V~NL~~----------~vt~~~L~~~Fs~yG~V~~v~i~~----~-------~-----------Gf~aFVef~---~~ 72 (124)
T 2e5i_A 28 LSIQNPLY----------PITVDVLYTVCNPVGKVQRIVIFK----R-------N-----------GIQAMVEFE---SV 72 (124)
T ss_dssp EEEESCCS----------CCCHHHHHHHHTTTSCEEEEEEEE----S-------S-----------SEEEEEEES---SH
T ss_pred EEEcCcCC----------CCCHHHHHHHHHhcCCEEEEEEEe----C-------C-----------CCEEEEEEC---CH
Confidence 45789983 346889999999999999999831 1 0 158999999 99
Q ss_pred hHHHHHHHHHhCCC
Q psy6597 236 VTMFIQVDIISGMD 249 (305)
Q Consensus 236 ~~F~kAM~aLrGmk 249 (305)
.+-.+||++|.|..
T Consensus 73 ~~A~~A~~~LnG~~ 86 (124)
T 2e5i_A 73 LCAQKAKAALNGAD 86 (124)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCE
Confidence 99999999999999
No 142
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.36 E-value=0.00044 Score=57.39 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=52.0
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
||++.|||-.+ ++.-|+.+|+.||+|..|.|+... .+ +. -.--|||+|. .
T Consensus 30 ~l~V~nLp~~~----------t~~~l~~~f~~~G~i~~v~i~~~~-----~~--g~----------~~g~afV~f~---~ 79 (216)
T 2qfj_A 30 RVYVGSIYYEL----------GEDTIRQAFAPFGPIKSIDMSWDS-----VT--MK----------HKGFAFVEYE---V 79 (216)
T ss_dssp EEEEECCCTTC----------CHHHHHHHHGGGSCEEEEEECCC------CC---C----------CCSEEEEEES---S
T ss_pred EEEEECCCCCC----------CHHHHHHHHHhCCCEEEEEEeecC-----CC--Cc----------cCceEEEEeC---C
Confidence 89999999765 578899999999999999996421 01 11 1124899999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
..+-.+||+.|.|..
T Consensus 80 ~~~A~~A~~~l~~~~ 94 (216)
T 2qfj_A 80 PEAAQLALEQMNSVM 94 (216)
T ss_dssp HHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHccCCe
Confidence 999999999999887
No 143
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.33 E-value=0.00018 Score=51.30 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=48.0
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
||++.|||..+ ++.-|+.+|++||+|..+.|+..- ..+. .. --|||+|. .
T Consensus 2 ~l~v~nlp~~~----------t~~~l~~~F~~~G~v~~v~i~~~~-------~~~~-~~---------g~afV~f~---~ 51 (77)
T 1uaw_A 2 KMFIGGLSWQT----------TQEGLREYFGQFGEVKECLVMRDP-------LTKR-SR---------GFGFVTFM---D 51 (77)
T ss_dssp CEEEESCCSSC----------CSHHHHHHHTTTSCCCCEEEECCC-------CSSS-CS---------SEEEECCC---C
T ss_pred EEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEecCC-------CCCC-cC---------ceEEEEEc---C
Confidence 79999999654 456699999999999999996521 0011 11 14899999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
..+-.+|++.+. ..
T Consensus 52 ~~~a~~a~~~~~-~~ 65 (77)
T 1uaw_A 52 QAGVDKVLAQSR-HE 65 (77)
T ss_dssp TTHHHHHHHTTT-CC
T ss_pred HHHHHHHHHhCC-Cc
Confidence 999999998776 44
No 144
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.33 E-value=0.0017 Score=57.14 Aligned_cols=126 Identities=12% Similarity=0.154 Sum_probs=81.6
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeecC-----CcceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCC
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTKS-----TLEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKP 126 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~ks-----TlefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~ 126 (305)
.++.=+|.+-+..+- ....+++.+. .--||.|+- ....+..++ |||..+ .|- .++|.-+
T Consensus 52 ~~t~~~l~~~F~~~G---~i~~v~i~~~~~~~~g~afV~f~~----~~~A~~A~~-~~~~~~--~g~--~i~v~~~---- 115 (292)
T 2ghp_A 52 SYNQNKVYKYFKHCG---PIIHVDVADSLKKNFRFARIEFAR----YDGALAAIT-KTHKVV--GQN--EIIVSHL---- 115 (292)
T ss_dssp TCCHHHHHHHHGGGS---CEEEEEEEECTTSSSEEEEEEESS----HHHHHHHHT-TTTCEE--TTE--ECEEEEC----
T ss_pred CCCHHHHHHHHHhcC---CeEEEEEEECCCCCcEEEEEEECC----HHHHHHHHH-hCCcEe--CCc--EEEEEEC----
Confidence 455555555444432 2345555442 234788853 334556664 788655 443 2333321
Q ss_pred CCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccC-cceeecCCCCCcccccc
Q psy6597 127 DFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYG-DIREVDIPINDPYRAQM 205 (305)
Q Consensus 127 dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG-~IR~vDIP~lDpyr~~m 205 (305)
..-||++.|||..+ ++.-|+.+|+.|| .|..|.|+....
T Consensus 116 -------------------------~~~~l~v~nlp~~~----------t~~~l~~~f~~~G~~i~~v~i~~~~~----- 155 (292)
T 2ghp_A 116 -------------------------TECTLWMTNFPPSY----------TQRNIRDLLQDINVVALSIRLPSLRF----- 155 (292)
T ss_dssp -------------------------CSCEEEEECCCTTC----------CHHHHHHHHHHTTCCCCEEECC---------
T ss_pred -------------------------CCCEEEEECCCCCC----------CHHHHHHHHHHhCCCeEEEEEEeCCC-----
Confidence 26799999999765 6788999999999 999999964211
Q ss_pred ccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 206 KPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 206 ~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
+ ... --|||+|. ...+-.+|++.|.|..
T Consensus 156 ---~-~~~---------g~afV~f~---~~~~a~~A~~~l~g~~ 183 (292)
T 2ghp_A 156 ---N-TSR---------RFAYIDVT---SKEDARYCVEKLNGLK 183 (292)
T ss_dssp -------C---------CEEEEECS---SHHHHHHHHHHHTTCE
T ss_pred ---C-Ccc---------eEEEEEEC---CHHHHHHHHHHhCCCE
Confidence 1 101 13899999 9999999999999988
No 145
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.32 E-value=0.00038 Score=49.67 Aligned_cols=64 Identities=9% Similarity=0.096 Sum_probs=48.4
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
+|++.|||..+ +++-|+..|+.||+|..+.|+.... . +. .. --|||+|. .
T Consensus 1 ~l~v~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~-----~--~~-~~---------g~afV~f~---~ 50 (75)
T 2mss_A 1 KIFVGGLSVNT----------TVEDVKHYFEQFGKVDDAMLMFDKT-----T--NR-HR---------GFGFVTFE---S 50 (75)
T ss_dssp CEEEECCCSSC----------CHHHHHHHHHTTSCCSEECCCBCSS-----S--TT-SC---------BEEEEECS---C
T ss_pred CEEEecCCCCC----------CHHHHHHHHHhcCCEEEEEEEecCC-----C--CC-cC---------cEEEEEEC---C
Confidence 58899998654 6788999999999999999964211 0 11 11 24899999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
..+--+|++ |.|..
T Consensus 51 ~~~a~~a~~-~~~~~ 64 (75)
T 2mss_A 51 EDIVEKVCE-IHFHE 64 (75)
T ss_dssp HHHHHHHHS-SSCCC
T ss_pred HHHHHHHHH-CCCCE
Confidence 999888887 77777
No 146
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.32 E-value=0.00083 Score=50.81 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=50.8
Q ss_pred CCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEE
Q psy6597 148 KPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQL 227 (305)
Q Consensus 148 kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayV 227 (305)
...+.+-||++.|||..+ ++.-|+.+|+.||+|..|.|+..- ..+ .-.--|||
T Consensus 10 ~~~~~~~~l~v~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~---------~~g--------~~~g~afV 62 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKT----------TEQDLKEYFSTFGEVLMVQVKKDL---------KTG--------HSKGFGFV 62 (103)
T ss_dssp CCCCCCCCEEEESCCSSC----------CHHHHHHHHGGGSCEEEEEEEECS---------SSC--------SEEEEEEE
T ss_pred CccCCCCEEEEEcCCCcC----------CHHHHHHHHHhcCCeEEEEEEecC---------CCC--------CccceEEE
Confidence 345667899999999665 678899999999999999995421 011 11234899
Q ss_pred eecCCCChhHHHHHHHH
Q psy6597 228 GKLPGTDHVTMFIQVDI 244 (305)
Q Consensus 228 Qy~~~~ey~~F~kAM~a 244 (305)
+|. ...+-.+||+.
T Consensus 63 ~f~---~~~~a~~A~~~ 76 (103)
T 2cqg_A 63 RFT---EYETQVKVMSQ 76 (103)
T ss_dssp EES---SHHHHHHHHHS
T ss_pred EEC---CHHHHHHHHHc
Confidence 999 99998888884
No 147
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.32 E-value=0.00065 Score=56.27 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=51.4
Q ss_pred CeEEeCCCcc-cccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 154 DTIYLSNLPV-KWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 154 DTI~l~gLP~-rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
-||++.|||- .+ ++..|+.+|+.||.|..|.|+..- ++ -|||+|.
T Consensus 4 ~~l~v~nlp~~~~----------~~~~l~~~F~~~G~i~~v~i~~~~-------------~g---------~afV~f~-- 49 (198)
T 1qm9_A 4 SVLLVSNLNPERV----------TPQSLFILFGVYGDVQRVKILFNK-------------KE---------NALVQMA-- 49 (198)
T ss_dssp CEEEEECCCSSSC----------CHHHHHHHHHTTCCCSEEECSTTC-------------SS---------CCEEECT--
T ss_pred cEEEEeCCCcccC----------CHHHHHHHHHhcCCEEEEEEEeCC-------------CC---------EEEEEEC--
Confidence 4899999996 43 578899999999999999996521 11 1899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+||+.|.|..
T Consensus 50 -~~~~a~~A~~~l~~~~ 65 (198)
T 1qm9_A 50 -DGNQAQLAMSHLNGHK 65 (198)
T ss_dssp -TTHHHHHHHHHHTTCC
T ss_pred -CHHHHHHHHHHhCCCe
Confidence 9999999999999988
No 148
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=97.31 E-value=0.00042 Score=52.76 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=50.0
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
+...+-||++.|||..+ +++-|+.+|+.|| |..|.|+...- . .+..++ -|||+
T Consensus 15 ~~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~G-i~~v~i~~~~~------~-~g~~~g---------~afV~ 67 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDV----------TEESIKEFFRGLN-ISAVRLPREPS------N-PERLKG---------FGYAE 67 (100)
T ss_dssp -----CEEEESCCSSCC----------SSSHHHHHSCSSC-EEEEECSCCTT------T-TCCCCS---------CEEEE
T ss_pred CCCCCcEEEEeCCCCCC----------CHHHHHHHHHhcC-CeEEEEEecCC------c-CCccCe---------EEEEE
Confidence 34567799999999764 3455999999999 99999964210 0 111121 28999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|+ .|.|..
T Consensus 68 f~---~~~~a~~Ai-~l~g~~ 84 (100)
T 2j76_E 68 FE---DLDSLLSAL-SLNEES 84 (100)
T ss_dssp EC---CHHHHHHHH-HTTTCC
T ss_pred EC---CHHHHHHHH-hcCCCE
Confidence 99 999999999 899988
No 149
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.30 E-value=0.00064 Score=51.28 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=49.6
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-||++.|||..+ ++.-|+.+|+.||.|+ |+.. . .+..+ --|||+|.
T Consensus 13 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~g~v~---~~~~--------~-~g~~~---------g~afV~f~ 61 (101)
T 2fc9_A 13 GESKTLVLSNLSYSA----------TEETLQEVFEKATFIK---VPQN--------Q-NGKSK---------GYAFIEFA 61 (101)
T ss_dssp CCCSEEEEESCCTTC----------CHHHHHHHCSSCSEEE---CCBC--------S-SSCBC---------SEEEEECS
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhCCEEE---EEEC--------C-CCCEe---------eEEEEEEC
Confidence 445799999999765 6788999999999883 3221 0 11111 24899999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 62 ---~~~~A~~A~~~l~g~~ 77 (101)
T 2fc9_A 62 ---SFEDAKEALNSCNKRE 77 (101)
T ss_dssp ---SHHHHHHHHHHTSSEE
T ss_pred ---CHHHHHHHHHHhCCCE
Confidence 9999999999999987
No 150
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.29 E-value=0.00078 Score=57.42 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=53.3
Q ss_pred CCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEE
Q psy6597 145 NEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFK 224 (305)
Q Consensus 145 ~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Fe 224 (305)
+...|.+.--||++.|||-.+ +|+.|+.+|++||+|..|.|+. +..++ .-.--
T Consensus 7 ~p~~p~~p~~tlfVgnLp~~~----------te~~L~~~F~~~G~I~~v~i~~---------d~~tg--------~~~G~ 59 (213)
T 4f02_A 7 NPSAPSYPMASLYVGDLHPDV----------TEAMLYEKFSPAGPILSIRVCR---------DMITR--------RSLGY 59 (213)
T ss_dssp --------CCEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEE---------CTTTC--------CEEEE
T ss_pred CCCCCCCCCcEEEEeCCCCCC----------CHHHHHHHHHhhCCEEEEEEec---------ccCCC--------Ccccc
Confidence 333344444589999999765 5888999999999999999853 10111 11335
Q ss_pred EEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 225 TQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 225 ayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
|||+|. ...+-.+|++.+.|..
T Consensus 60 afV~F~---~~~~A~~Ai~~~~~~~ 81 (213)
T 4f02_A 60 AYVNFQ---QPADAERALDTMNFDV 81 (213)
T ss_dssp EEEEES---SHHHHHHHHHHHTTCE
T ss_pred ccceeC---CHHHHHHHHHHhhhhh
Confidence 899999 9999999999998876
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.28 E-value=0.0005 Score=54.70 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=52.0
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||-.+ ++.-|+.+|+.||+|..+.|+.. . .++ . -.--|||+|.
T Consensus 4 ~~l~v~nlp~~~----------~~~~l~~~f~~~G~i~~v~i~~~-----~----~~~-~-------~~g~afV~f~--- 53 (168)
T 1b7f_A 4 TNLIVNYLPQDM----------TDRELYALFRAIGPINTCRIMRD-----Y----KTG-Y-------SYGYAFVDFT--- 53 (168)
T ss_dssp SEEEEECCCTTC----------CHHHHHHHHHTTSCEEEEECCEE-----T----TTT-E-------ECSEEEEEES---
T ss_pred cEEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEEEe-----C----CCC-c-------cceEEEEEEC---
Confidence 589999999765 57889999999999999999531 0 011 0 0113899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 54 ~~~~A~~a~~~l~~~~ 69 (168)
T 1b7f_A 54 SEMDSQRAIKVLNGIT 69 (168)
T ss_dssp SHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHhcCCCE
Confidence 9999999999999987
No 152
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.26 E-value=0.0011 Score=52.12 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=59.6
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
--||+|.||.... . -..-.+.-|+..|++||+|..|.|+.. | .. ++. ..--+||+|.
T Consensus 8 s~~l~l~Nm~~~~----~-l~dd~~~dl~~~f~~~G~V~~v~i~~~-~---~~---~~~---------~~G~~FV~f~-- 64 (105)
T 2pe8_A 8 TKVVLLRNMVGAG----E-VDEDLEVETKEECEKYGKVGKCVIFEI-P---GA---PDD---------EAVRIFLEFE-- 64 (105)
T ss_dssp CSEEEEESSSCSC----C-C---CHHHHHHHGGGGSCEEEEEEEEC-S---SC---CTT---------TSEEEEEEES--
T ss_pred CCEEEEEcCCChH----H-hhHHHHHHHHHHHHhcCCEEEEEEecC-C---CC---CCC---------CcEEEEEEEC--
Confidence 3589999996321 1 112358899999999999999999642 1 00 011 1235899999
Q ss_pred CChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEE
Q psy6597 233 TDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYV 275 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~ 275 (305)
...+-.+|+++|.|+. + +| +.+.|+|.
T Consensus 65 -~~~~A~~Ai~~lnG~~----~-----~G------r~i~v~~a 91 (105)
T 2pe8_A 65 -RVESAIKAVVDLNGRY----F-----GG------RVVKACFY 91 (105)
T ss_dssp -SHHHHHHHHHHHTTCE----E-----TT------EECEEEEC
T ss_pred -CHHHHHHHHHHHCCCE----E-----CC------cEEEEEEc
Confidence 9999999999999999 5 36 47777764
No 153
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.25 E-value=0.0013 Score=48.58 Aligned_cols=68 Identities=10% Similarity=-0.007 Sum_probs=53.8
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
+...+-||++.|||..+ ++.-|+.+|+.| .|..|.|+.. + .+. -.--|||+
T Consensus 6 ~~~~~~~l~v~nLp~~~----------t~~~l~~~F~~~-~i~~v~i~~~-~--------~g~---------~~g~afV~ 56 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNV----------TEKNVMEFLAPL-KPVAIRIVRN-A--------HGN---------KTGYIFVD 56 (91)
T ss_dssp CCCCCCEEEEECCCSSC----------CHHHHHHHHTTS-CCSEEEEEEC-T--------TSC---------EEEEEEEE
T ss_pred CCCCccEEEEECCCCCC----------CHHHHHHHHhhC-CceEEEEEEC-C--------CCC---------CceEEEEE
Confidence 45667899999999654 678899999999 9999998642 0 111 13359999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|++ |.|..
T Consensus 57 f~---~~~~a~~A~~-~~g~~ 73 (91)
T 2dgw_A 57 FS---NEEEVKQALK-CNREY 73 (91)
T ss_dssp CS---SHHHHHHHHH-SCSEE
T ss_pred EC---CHHHHHHHHH-hCCce
Confidence 99 9999999999 98877
No 154
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=0.00046 Score=53.46 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=50.0
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
+-||++.|||..+ ++..|+.+|+.||+|..|.|+.. + .. +. .. --|||+|.
T Consensus 27 ~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~-~----~~--g~-~~---------g~afV~f~-- 77 (116)
T 1x4b_A 27 FRKLFIGGLSFET----------TEESLRNYYEQWGKLTDCVVMRD-P----AS--KR-SR---------GFGFVTFS-- 77 (116)
T ss_dssp HTEEEEECCTTCC----------CHHHHHHHHTSSCCCSEEEEECC-T----TT--SS-CC---------SEEEEECS--
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEEC-C----CC--CC-cC---------ceEEEEeC--
Confidence 4689999999665 67889999999999999999642 0 00 11 11 14899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++. .|..
T Consensus 78 -~~~~a~~Ai~~-~~~~ 92 (116)
T 1x4b_A 78 -SMAEVDAAMAA-RPHS 92 (116)
T ss_dssp -SHHHHHHHHTS-CSEE
T ss_pred -CHHHHHHHHHh-CCcE
Confidence 99999999987 5554
No 155
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=0.0012 Score=49.64 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=48.0
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|| .-++..|+.+|+.||+|..|.|+ . . ++ -|||+|.
T Consensus 16 ~~l~V~n~------------~~t~~~l~~~F~~~G~i~~v~i~---------~--~---~g---------~afV~f~--- 57 (97)
T 1x5p_A 16 NTLYVYGE------------DMTPTLLRGAFSPFGNIIDLSMD---------P--P---RN---------CAFVTYE--- 57 (97)
T ss_dssp SEEEEECS------------SCCHHHHHHHHTTTSCEEEEEEE---------T--T---TT---------EEEEEES---
T ss_pred CEEEEcCC------------CCCHHHHHHHHhhCCCEEEEEec---------C--C---CC---------EEEEEEC---
Confidence 48999984 13678899999999999999983 1 1 11 2999999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 58 ~~~~a~~Ai~~l~g~~ 73 (97)
T 1x5p_A 58 KMESADQAVAELNGTQ 73 (97)
T ss_dssp SHHHHHHHHHHTTTEE
T ss_pred CHHHHHHHHHHhCCCe
Confidence 9999999999999988
No 156
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.20 E-value=0.00065 Score=58.53 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=51.5
Q ss_pred CeEEeCCCcc-cccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 154 DTIYLSNLPV-KWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 154 DTI~l~gLP~-rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
-||++.|||. .+ ++..|+..|+.||+|..|.|+.. + ++| |||+|.
T Consensus 35 ~~l~V~nLp~~~~----------te~~L~~~F~~~G~i~~v~i~~~-~------------~g~---------afV~F~-- 80 (229)
T 2adc_A 35 SVLLVSNLNPERV----------TPQSLFILFGVYGDVQRVKILFN-K------------KEN---------ALVQMA-- 80 (229)
T ss_dssp SEEEEESCCTTTC----------CHHHHHHHHHHHTCEEEEEECCT-T------------SCC---------EEEEES--
T ss_pred CEEEEeCCCcccC----------CHHHHHHHHHhCCCeEEEEEEEC-C------------CCE---------EEEEEC--
Confidence 4899999996 44 57889999999999999999652 1 111 999999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 81 -~~~~A~~Ai~~l~g~~ 96 (229)
T 2adc_A 81 -DGNQAQLAMSHLNGHK 96 (229)
T ss_dssp -CHHHHHHHHHHHTTCB
T ss_pred -CHHHHHHHHHHhCCCe
Confidence 9999999999999987
No 157
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.20 E-value=0.0004 Score=54.81 Aligned_cols=70 Identities=11% Similarity=0.035 Sum_probs=52.2
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
+.+.+-||++.|||-.+ ++.-|+.+|+.||.|..+-+...++ + +. -.--|||+
T Consensus 21 ~~~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~v~~~~~~~~~~-----~--g~----------~~G~afV~ 73 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEA----------ENKHVIDFFKKLDIVEDSIYIAYGP-----N--GK----------ATGEGFVE 73 (124)
T ss_dssp CCCCCCEEEEECCCTTC----------CHHHHHHHSCSSCBCTTTCEEEECT-----T--SS----------EEEEEEEE
T ss_pred CCCCCcEEEEeCCCCCC----------CHHHHHHHHHhcCCccceEEEEECC-----C--CC----------CCeEEEEE
Confidence 34555799999999654 6788999999999998755533221 0 11 12349999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|++ |.|..
T Consensus 74 F~---~~~~a~~Al~-~~g~~ 90 (124)
T 1wel_A 74 FR---NEADYKAALC-RHKQY 90 (124)
T ss_dssp BS---SSHHHHHHHT-SCSBC
T ss_pred EC---CHHHHHHHHH-hCCCe
Confidence 99 9999999999 88877
No 158
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.19 E-value=0.00021 Score=52.76 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=49.7
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
||++.|||..+ ++.-|+.+|+.||+|..+.|+.... .+.. .--|||+|. .
T Consensus 3 ~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~--------~~~~---------~g~afV~f~---~ 52 (90)
T 2ki2_A 3 NIYVGNLVYSA----------TSEQVKELFSQFGKVFNVKLIYDRE--------TKKP---------KGFGFVEMQ---E 52 (90)
T ss_dssp EEEEEEECTTS----------SHHHHTTTHHHHTCCSEEEECCCSS--------SCCC---------CEEEEEEEC---T
T ss_pred EEEECCCCCCC----------CHHHHHHHHHhcCCEEEEEEEEcCC--------CCCc---------ceEEEEEEC---C
Confidence 78999998654 6788999999999999999964210 0111 224899999 9
Q ss_pred hhHHHHHHHHHhCCC
Q psy6597 235 HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 y~~F~kAM~aLrGmk 249 (305)
.. -.+|++.|.|..
T Consensus 53 ~~-a~~a~~~l~g~~ 66 (90)
T 2ki2_A 53 ES-VSEAIAKLDNTD 66 (90)
T ss_dssp TH-HHHHHHTSCSSC
T ss_pred HH-HHHHHHHhCCCE
Confidence 88 899999999888
No 159
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.19 E-value=0.00068 Score=54.47 Aligned_cols=77 Identities=22% Similarity=0.206 Sum_probs=55.6
Q ss_pred CCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecC-CCCCccccccccCCCCCccccCCCceeEEE
Q psy6597 147 MKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDI-PINDPYRAQMKPYISGMTLFSHAQSLIFKT 225 (305)
Q Consensus 147 ~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDI-P~lDpyr~~m~~~~~~~~~fs~~~~l~Fea 225 (305)
..++...-||++.|||-.+ ++.-|+.+|+.||.|..+.| .+.|-.- .. .+. -.--|
T Consensus 39 ~~~~~~~~~l~V~nLp~~~----------te~~L~~~F~~~G~i~~~~~~~~~di~~--~~-~g~----------~~g~a 95 (143)
T 3egn_A 39 YEPGEPNCRIYVKNLAKHV----------QEKDLKYIFGRYVDFSSETQRIMFDIRL--MK-EGR----------MKGQA 95 (143)
T ss_dssp CCCCSCCSEEEEEEECTTC----------CHHHHHHHHGGGCCTTCHHHHHHCEEEE--EE-ETT----------TEEEE
T ss_pred cCCCCCCCEEEEeCCCCCC----------CHHHHHHHHHHhCCcccccccceeeEEe--cc-CCC----------cccEE
Confidence 4456667899999999654 68889999999999988632 1111000 01 011 13358
Q ss_pred EEeecCCCChhHHHHHHHHHhCCC
Q psy6597 226 QLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 226 yVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
||+|. ...+-.+|++.|.|..
T Consensus 96 fV~f~---~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 96 FIGLP---NEKAAAKALKEANGYV 116 (143)
T ss_dssp EEECS---SHHHHHHHHHHHTTBE
T ss_pred EEEeC---CHHHHHHHHHHhCCCE
Confidence 99999 9999999999999988
No 160
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.19 E-value=0.00093 Score=52.15 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=51.6
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
.-||++.|||..+ +++-|+.+|+.||+|..|.|+.. ...+. -.--|||+|.
T Consensus 36 ~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~v~i~~~-------~~~~~----------~~g~afV~f~-- 86 (124)
T 2jwn_A 36 KRSVYVGNVDYGS----------TAQDLEAHFSSCGSINRITILCD-------KFSGH----------PKGYAYIEFA-- 86 (124)
T ss_dssp HTEEEEEEECTTC----------CHHHHHHHHHTTSCEEEEEEEEE-------CTTSS----------CEEEEEEEES--
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHhcCCEEEEEEEec-------CCCCC----------cccEEEEEEC--
Confidence 4599999999654 57889999999999999998541 00011 1335899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|+ .|.|..
T Consensus 87 -~~~~a~~A~-~l~g~~ 101 (124)
T 2jwn_A 87 -ERNSVDAAV-AMDETV 101 (124)
T ss_dssp -SHHHHHHHH-TTTTCE
T ss_pred -CHHHHHHHH-hcCCCe
Confidence 999999999 798887
No 161
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.19 E-value=0.00061 Score=50.53 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=50.2
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
.-||++.|||-.+ ++..|+.+|++| +|..+.|+ . . ++ -|||+|.
T Consensus 5 ~~~l~V~nLp~~~----------t~~~l~~~F~~~-~v~~~~i~---------~--~---~g---------~afV~f~-- 48 (88)
T 1wg1_A 5 SSGILVKNLPQDS----------NCQEVHDLLKDY-DLKYCYVD---------R--N---KR---------TAFVTLL-- 48 (88)
T ss_dssp CCCEEEESCCSSC----------CHHHHHHHTCSS-CCCCEEEE---------G--G---GT---------EEEECCS--
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHhhC-CeEEEEEe---------C--C---Cc---------EEEEEEC--
Confidence 3589999999554 688899999999 99999983 1 0 11 2899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 49 -~~~~a~~Ai~~l~g~~ 64 (88)
T 1wg1_A 49 -NGEQAQNAIQMFHQYS 64 (88)
T ss_dssp -CHHHHHHHHHHHTTEE
T ss_pred -CHHHHHHHHHHhCCCe
Confidence 9999999999999988
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.18 E-value=0.00067 Score=54.07 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=50.1
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||-.+ +++-|+.+|+.||+|..|.|+.. + .+ |. ..+ -|||+|.
T Consensus 4 ~~l~v~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~-~----~~--g~-~~g---------~afV~f~--- 53 (167)
T 2cjk_A 4 CKMFIGGLNWDT----------TEDNLREYFGKYGTVTDLKIMKD-P----AT--GR-SRG---------FGFLSFE--- 53 (167)
T ss_dssp GEEEECSCCTTC----------CHHHHHHHHTTTCCEEEEECCCC-T----TT--SS-CCS---------CEEEEES---
T ss_pred cEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEEEC-C----CC--CC-ccc---------eEEEEEc---
Confidence 489999999765 68889999999999999999642 1 00 11 121 2899999
Q ss_pred ChhHHHHHHHH---HhCCC
Q psy6597 234 DHVTMFIQVDI---ISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~a---LrGmk 249 (305)
...+-.+|++. |.|+.
T Consensus 54 ~~~~a~~A~~~~~~~~g~~ 72 (167)
T 2cjk_A 54 KPSSVDEVVKTQHILDGKV 72 (167)
T ss_dssp STHHHHHHHHSCCEETTEE
T ss_pred cHHHHHHHHhcccccCCeE
Confidence 99999999986 55555
No 163
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.17 E-value=0.001 Score=56.68 Aligned_cols=135 Identities=15% Similarity=0.162 Sum_probs=86.6
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeec--CCc-----ceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeecc
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTK--STL-----EFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEA 124 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~k--sTl-----efiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Ea 124 (305)
.++.-+|.+-+..+= ...++++.+ .|- -||.|+ +....+..++.|||..+ .|- .++|..+..
T Consensus 26 ~~te~~L~~~F~~~G---~I~~v~i~~d~~tg~~~G~afV~F~----~~~~A~~Ai~~~~~~~~--~g~--~i~~~~~~~ 94 (213)
T 4f02_A 26 DVTEAMLYEKFSPAG---PILSIRVCRDMITRRSLGYAYVNFQ----QPADAERALDTMNFDVI--KGK--PVRIMWSQR 94 (213)
T ss_dssp TCCHHHHHHHHGGGS---CEEEEEEEECTTTCCEEEEEEEEES----SHHHHHHHHHHHTTCEE--TTE--ECEEEECCC
T ss_pred CCCHHHHHHHHHhhC---CEEEEEEecccCCCCccccccceeC----CHHHHHHHHHHhhhhhc--CCc--ccccccccc
Confidence 556666655554431 234556543 232 378885 34456778888998765 332 234433221
Q ss_pred CCCCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccc
Q psy6597 125 KPDFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQ 204 (305)
Q Consensus 125 k~dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~ 204 (305)
. ... . ....-+|++.|||-.+ ++.-|+.+|++||.|..+.|+.+ +
T Consensus 95 ~------~~~----~----------~~~~~~l~v~nl~~~~----------t~~~l~~~F~~~G~i~~~~i~~d-~---- 139 (213)
T 4f02_A 95 D------PSL----R----------KSGVGNIFIKNLDKSI----------DNKALYDTFSAFGNILSCKVVCD-E---- 139 (213)
T ss_dssp C------THH----H----------HHCTTEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEEE-T----
T ss_pred c------ccc----c----------ccccccceECCccccc----------HHHHHHHHHhhcCCeEEEEeecc-C----
Confidence 1 000 0 1123479999999654 68889999999999999999531 0
Q ss_pred cccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 205 MKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 205 m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
++ -.--|||+|. ...+-.+|++.|.|+.
T Consensus 140 ----~~----------~~g~~fV~f~---~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 140 ----NG----------SKGYGFVHFE---TQEAAERAIEKMNGML 167 (213)
T ss_dssp ----TE----------EEEEEEEEES---SHHHHHHHHHHHTTCE
T ss_pred ----CC----------CceEEEEEeC---CHHHHHHHHHHhCCCE
Confidence 11 1234899999 9999999999999988
No 164
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.0012 Score=51.33 Aligned_cols=67 Identities=4% Similarity=-0.036 Sum_probs=51.3
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcc-eeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDI-REVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~I-R~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...-||++.|||..+ ++.-|+.+|+.||.| ..|.|+.+. . +. .++ -|||+|
T Consensus 13 ~~~~~l~V~nLp~~~----------t~~~l~~~F~~~g~v~~~v~i~~d~--~------g~-~~G---------~afV~F 64 (114)
T 2cpy_A 13 SAKVCAHITNIPFSI----------TKMDVLQFLEGIPVDENAVHVLVDN--N------GQ-GLG---------QALVQF 64 (114)
T ss_dssp SCCCEEEEESCCTTS----------CHHHHHHHTTTSCCCSTTEEECCCT--T------SS-CSS---------CEEEEC
T ss_pred CCccEEEEeCcCCcC----------CHHHHHHHHHhCCCcCCeEEEEECC--C------CC-cce---------EEEEEE
Confidence 445799999999765 678899999999999 889886531 1 11 122 289999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+|++. .|..
T Consensus 65 ~---~~~~a~~Al~~-~~~~ 80 (114)
T 2cpy_A 65 K---NEDDARKSERL-HRKK 80 (114)
T ss_dssp S---SHHHHHHHGGG-CSEE
T ss_pred C---CHHHHHHHHHh-CCCc
Confidence 9 99999999887 6655
No 165
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.13 E-value=0.0018 Score=49.09 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=53.6
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
+.+.+-||++.|||..+ ++.-|+.+|+.|| |..|.|+... ..+ .-.--|||+
T Consensus 11 ~~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~g-i~~v~i~~~~---------~~g--------~~~g~afV~ 62 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNT----------VQGDIDAIFKDLS-IRSVRLVRDK---------DTD--------KFKGFCYVE 62 (103)
T ss_dssp CSSSCEEEEEESCCTTC----------CHHHHHHHTTTSC-EEEEEEEECS---------SSC--------SEEEEEEEE
T ss_pred CCCCCeEEEEeCCCCCC----------CHHHHHHHHHhCC-ceEEEEeecC---------CCC--------ccceEEEEE
Confidence 45567799999999654 6888999999998 9999995421 111 112349999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|| .|.|..
T Consensus 63 f~---~~~~a~~A~-~l~g~~ 79 (103)
T 2dng_A 63 FD---EVDSLKEAL-TYDGAL 79 (103)
T ss_dssp ES---SHHHHHHHG-GGTTCE
T ss_pred EC---CHHHHHHHH-hhCCCe
Confidence 99 999999999 899987
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=97.10 E-value=0.0011 Score=52.83 Aligned_cols=66 Identities=8% Similarity=0.019 Sum_probs=50.6
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
..+|++.|||-.| ++.-|+.+|+.||.|..+.|+.+.. ++.+ .--|||+|.
T Consensus 87 ~~~l~V~nlp~~~----------t~~~l~~~F~~~G~i~~~~i~~~~~-------~g~~----------~g~afV~f~-- 137 (167)
T 2cjk_A 87 TGKIFVGGIGPDV----------RPKEFEEFFSQWGTIIDAQLMLDKD-------TGQS----------RGFGFVTYD-- 137 (167)
T ss_dssp CEEEEEEEECTTC----------CHHHHHHHHHTTSCCSEEECCCSSS-------SSTT----------SEEEEEEES--
T ss_pred CCeEEECCCCCCC----------CHHHHHHHHHhCccEEEEEEEEcCC-------CCcc----------ceEEEEEEC--
Confidence 4589999999755 6788999999999999999965321 0111 224899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++ +.|..
T Consensus 138 -~~~~a~~A~~-~~~~~ 152 (167)
T 2cjk_A 138 -SADAVDRVCQ-NKFID 152 (167)
T ss_dssp -SHHHHHHHHH-CSEEC
T ss_pred -CHHHHHHHHh-CCCEE
Confidence 9999999997 66555
No 167
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.07 E-value=0.0019 Score=62.60 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=54.2
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
.-.-||+|.|||..+ ++..|..+|++||.|..|.|+.. +. + + . ..--|||+|.
T Consensus 100 ~~~~~lfV~nL~~~~----------te~~L~~~F~~~G~I~~v~i~~d-~~----t--g-~---------~kG~aFV~F~ 152 (437)
T 3pgw_S 100 DAFKTLFVARVNYDT----------TESKLRREFEVYGPIKRIHMVYS-KR----S--G-K---------PRGYAFIEYE 152 (437)
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHHcCCeeEEEeecc-CC----C--C-C---------ccceEEEeec
Confidence 334699999999653 57889999999999999999642 10 0 1 1 1224899999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+..+|+++|.|..
T Consensus 153 ---~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 153 ---HERDMHSAYKHADGKK 168 (437)
T ss_pred ---cHHHHHHHHHHcCCCE
Confidence 9999999999999998
No 168
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.06 E-value=0.0015 Score=51.38 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=49.1
Q ss_pred HHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCCccceeee
Q psy6597 177 EAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMDYTTIIML 256 (305)
Q Consensus 177 e~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk~~~~L~~ 256 (305)
++-|+..|++||+|..|.||..-. . +. +...--+||+|. +-.+-.+|+++|.|+. +
T Consensus 29 ~~dl~~~f~k~G~V~~v~i~~~~~-----~--~~--------~~~~G~~fV~f~---~~~~A~~Ai~~lnG~~----f-- 84 (105)
T 3v4m_A 29 VEDVRDECSKYGLVKSIEIPRPVD-----G--VE--------VPGCGKIFVEFT---SVFDCQKAMQGLTGRK----F-- 84 (105)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCBT-----T--BC--------CTTTTEEEEEES---SHHHHHHHHHHHTTCE----E--
T ss_pred HHHHHHHHHccCCEEEEEEeccCC-----C--CC--------cCCcEEEEEEEC---CHHHHHHHHHHhCCCE----e--
Confidence 457999999999999999975311 0 00 011236899999 9999999999999999 5
Q ss_pred ecccCCCCCCcceEEEEE
Q psy6597 257 KASRKTSGGASKSMCVTY 274 (305)
Q Consensus 257 K~~dg~~~~~~~~~~~~~ 274 (305)
+| +.+.|.|
T Consensus 85 ---~G------R~i~v~~ 93 (105)
T 3v4m_A 85 ---AN------RVVVTKY 93 (105)
T ss_dssp ---TT------EECEEEE
T ss_pred ---CC------CEEEEEE
Confidence 36 4777776
No 169
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.05 E-value=0.0018 Score=49.07 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=53.4
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||..+ ++.-|+.+|+.||+|..|.|+..- ..+ .-.--|||+|
T Consensus 13 ~~~~~~l~V~nlp~~~----------t~~~l~~~F~~~G~v~~v~i~~~~---------~~g--------~~~g~afV~f 65 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWST----------TQETLRSYFSQYGEVVDCVIMKDK---------TTN--------QSRGFGFVKF 65 (105)
T ss_dssp SSSSSEECCBSCCTTC----------CHHHHHHHHHTTSCEEEEEEEECS---------SSC--------CEEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCeEEEEEeeCC---------CCC--------CcceEEEEEE
Confidence 4566799999999654 678899999999999999985420 011 1223589999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
+ ...+-.+|++. .|..
T Consensus 66 ~---~~~~a~~a~~~-~~~~ 81 (105)
T 2dh8_A 66 K---DPNCVGTVLAS-RPHT 81 (105)
T ss_dssp S---STTHHHHHHHH-CSEE
T ss_pred C---CHHHHHHHHHh-CCCe
Confidence 9 99999999998 7665
No 170
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.04 E-value=0.0022 Score=56.10 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=50.0
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHH----HHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAM----LRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~v----l~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
--||++.|||-.+ ++.. |..+|+.||+|..|.|+- + +. .+ --|||+
T Consensus 9 ~~~l~V~nlp~~~----------~~~~l~~~L~~~F~~~G~i~~v~~~~--------~--~~-~~---------g~afV~ 58 (282)
T 3pgw_A 9 NHTIYINNLNEKI----------KKDELKKSLYAIFSQFGQILDILVSR--------S--LK-MR---------GQAFVI 58 (282)
T ss_pred CCEEEEeCCCCCC----------CHHHHHHHHHHHHhccCCeEEEEEcC--------C--CC-cc---------eEEEEE
Confidence 3589999999544 4555 448999999999998852 1 11 12 248999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|++.|.|..
T Consensus 59 f~---~~~~a~~A~~~l~g~~ 76 (282)
T 3pgw_A 59 FK---EVSSATNALRSMQGFP 76 (282)
T ss_pred EC---CHHHHHHHHHHhcCCe
Confidence 99 9999999999999988
No 171
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.03 E-value=0.0025 Score=53.24 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=52.5
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccC--cceeecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYG--DIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG--~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
++.-||++.|||-. -+|+-|+.+|+.|| +|..|.|+.+- ..+ .-.--+||.
T Consensus 53 ~~~~~lfVgnLp~~----------~te~~L~~~F~~~G~i~v~~v~i~~d~---------~tg--------~skGfaFV~ 105 (156)
T 3n9u_C 53 NRRAAVYVGSFSWW----------TTDQQLIQVIRSIGVYDVVELKFAENR---------ANG--------QSKGYAEVV 105 (156)
T ss_dssp ---CEEEEECCCTT----------CCHHHHHHHHHHTTCCCEEEEEEEECT---------TTC--------CEEEEEEEE
T ss_pred CCCCEEEEeCCCCC----------CCHHHHHHHHHHHCCccEEEEEEEecC---------CCC--------ccceEEEEE
Confidence 45679999999954 36788999999999 99999885321 011 112248999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+||+.|.|..
T Consensus 106 f~---~~~~A~~Ai~~lng~~ 123 (156)
T 3n9u_C 106 VA---SENSVHKLLELLPGKV 123 (156)
T ss_dssp ES---CHHHHHHHHHHSTTCE
T ss_pred EC---CHHHHHHHHHHcCCCE
Confidence 99 9999999999999998
No 172
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.00 E-value=0.0013 Score=49.24 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=49.4
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
+..-||++.|||..+ ++..|+.+|+.||+|..| + .|+ ..+ . =|||+|.
T Consensus 6 ~~~~~l~V~nl~~~~----------t~~~l~~~F~~~G~v~~v-~--~~~--------~~g-------~----~afV~f~ 53 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGV----------DSAQLSEYFLAFGPVASV-V--MDK--------DKG-------V----FAIVEMG 53 (94)
T ss_dssp TTCCEEEEECCCTTC----------CHHHHHHHGGGTSCEEEE-E--ECS--------SSC-------C----EEEEEES
T ss_pred CCCCEEEEECCCCCC----------CHHHHHHHHHhcCCeEEE-E--EcC--------CCC-------c----EEEEEEC
Confidence 344599999999654 688899999999999986 1 111 111 1 6999999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++ |.|..
T Consensus 54 ---~~~~a~~ai~-l~g~~ 68 (94)
T 2e5g_A 54 ---DVGAREAVLS-QSQHS 68 (94)
T ss_dssp ---SHHHHHHHHT-CSCCE
T ss_pred ---CHHHHHHHHh-cCCeE
Confidence 9999999999 98887
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=96.98 E-value=0.00099 Score=48.48 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=51.9
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhcc----C-------cceeecCCCCCccccccccCCCCCccccCC
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNY----G-------DIREVDIPINDPYRAQMKPYISGMTLFSHA 218 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~F----G-------~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~ 218 (305)
.+.+-||++.|||..+ ++.-|+..|+.| | +|..+.|+.. ++
T Consensus 3 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--------------kg---- 54 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGI----------TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--------------KN---- 54 (87)
T ss_dssp SGGGGEEEEESCCTTC----------CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--------------SS----
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--------------Cc----
Confidence 3456799999999754 678899999999 8 8888888521 11
Q ss_pred CceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 219 QSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 219 ~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
-|||+|. ...+-.+|+ .|.|..
T Consensus 55 -----~afV~f~---~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 55 -----FAFLEFR---SVDETTQAM-AFDGII 76 (87)
T ss_dssp -----EEEEEES---SHHHHHHHG-GGTTCE
T ss_pred -----EEEEEcC---CHHHHHHHH-hcCCCE
Confidence 2899999 999999999 999988
No 174
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.98 E-value=0.0018 Score=57.12 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=52.9
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccC--cceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYG--DIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG--~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
+.-||+|.|||..+ +|.-|+.+|++|| +|..|.|+.+ + ..+ .-..-+||.|
T Consensus 67 ~~~~lfVgnL~~~~----------te~~L~~~F~~~G~~~v~~v~i~~d-~--------~tg--------~skGfaFV~f 119 (229)
T 3q2s_C 67 KRIALYIGNLTWWT----------TDEDLTEAVHSLGVNDILEIKFFEN-R--------ANG--------QSKGFALVGV 119 (229)
T ss_dssp --CEEEEESCCTTC----------CHHHHHHHHHTTTCCCEEEEEEEEC-T--------TTC--------CEEEEEEEEE
T ss_pred CccEEEEeCCCCCC----------CHHHHHHHHHHHCCcceEEEEEEec-C--------CCC--------ccceEEEEEE
Confidence 45589999999654 6888999999999 9999999541 1 011 1133489999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
+ ...+-.+||+.|.|..
T Consensus 120 ~---~~~~a~~Ai~~lng~~ 136 (229)
T 3q2s_C 120 G---SEASSKKLMDLLPKRE 136 (229)
T ss_dssp S---CTTHHHHHHTTSTTSC
T ss_pred C---CHHHHHHHHHHcCCCe
Confidence 9 9999999999999988
No 175
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.97 E-value=0.0016 Score=50.13 Aligned_cols=69 Identities=9% Similarity=-0.022 Sum_probs=52.8
Q ss_pred CCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCc---ceeecCCCCCccccccccCCCCCccccCCCceeEEE
Q psy6597 149 PGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGD---IREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKT 225 (305)
Q Consensus 149 pgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~---IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Fea 225 (305)
....+-||++.|||-.. ++.-|+..|+.||. |..|.|+.... +...+ -|
T Consensus 7 ~~~~~~~l~V~nLp~~~----------te~~l~~~F~~~g~~~~v~~v~i~~~~~---------g~~~G---------~a 58 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSC----------TMEDVLNFFSDCRIRNGENGIHFLLNRD---------GKRRG---------DA 58 (107)
T ss_dssp CCSSCCEEEEECCCSSC----------CSHHHHHHTTTSCBTTTTTTEECCCCTT---------STTCS---------EE
T ss_pred CCCCccEEEEeCCCCCC----------CHHHHHHHHHhcCCcCCcceEEEEECCC---------CCEee---------EE
Confidence 35667799999999654 56779999999999 89999964211 11121 38
Q ss_pred EEeecCCCChhHHHHHHHHHhCCC
Q psy6597 226 QLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 226 yVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
||+|. ...+..+|++ +.|..
T Consensus 59 fV~F~---~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 59 LIEME---SEQDVQKALE-KHRMY 78 (107)
T ss_dssp EEEBS---SHHHHHHHHT-TTTCC
T ss_pred EEEEC---CHHHHHHHHH-hCcce
Confidence 99999 9999999999 77765
No 176
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.0032 Score=47.32 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=49.6
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
....-||++.|||..+ ++.-|+.+|+.|+.|+-+--+. .+ .-.--|||+|
T Consensus 12 ~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~~~~~~~~~~~-----------~~---------~~~g~afV~f 61 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDT----------TEETLKESFDGSVRARIVTDRE-----------TG---------SSKGFGFVDF 61 (102)
T ss_dssp SCCCSSEEEECCCTTC----------CHHHHHHTSTTCSEEEEEECSS-----------SC---------SEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCcc----------CHHHHHHHhcCCeEEEEEecCC-----------CC---------CcCcEEEEEE
Confidence 3455789999999654 6788999999987655432110 01 1122499999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. ...+-.+||+.|.|..
T Consensus 62 ~---~~~~A~~A~~~l~g~~ 78 (102)
T 2fc8_A 62 N---SEEDAKAAKEAMEDGE 78 (102)
T ss_dssp S---SHHHHHHHHHHHTTCE
T ss_pred C---CHHHHHHHHHHhCCCe
Confidence 9 9999999999999988
No 177
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.96 E-value=0.0029 Score=49.85 Aligned_cols=74 Identities=9% Similarity=-0.026 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCc---ceeecCCCCCccccccccCCCCCccccCCCc
Q psy6597 144 MNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGD---IREVDIPINDPYRAQMKPYISGMTLFSHAQS 220 (305)
Q Consensus 144 m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~---IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~ 220 (305)
+....+....-||++.|||... +|.-|+..|+.||. |..|.|+... .+ .
T Consensus 8 ~~~~~~~~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~~~~v~~v~i~~~~---------~g---------~ 59 (118)
T 2db1_A 8 MMLGPEGGEGYVVKLRGLPWSC----------SIEDVQNFLSDCTIHDGVAGVHFIYTR---------EG---------R 59 (118)
T ss_dssp BCSSSCBCCCCEEEEESCCTTC----------CHHHHHHHTTTSCBTTGGGGEEEEECS---------SS---------C
T ss_pred cccCCCCCCCcEEEEeCCCCCC----------CHHHHHHHHHHcCCccCceeEEEEECC---------CC---------C
Confidence 3333445667789999999654 67889999999999 8888885311 11 1
Q ss_pred eeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 221 LIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 221 l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
-.--|||+|. ...+..+|++ +.|..
T Consensus 60 ~~G~afV~F~---~~~~a~~Al~-~~g~~ 84 (118)
T 2db1_A 60 QSGEAFVELE---SEDDVKLALK-KDRES 84 (118)
T ss_dssp EEEEEEEEBS---SHHHHHHHGG-GTTEE
T ss_pred CCeEEEEEEC---CHHHHHHHHh-cCCCe
Confidence 2336999999 9999999999 87765
No 178
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.95 E-value=0.0014 Score=49.36 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=50.1
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
.+-||++.|||..+ ++.-|+.+|+.||.|.. .+ +.|+.. +. .++ -|||+|.
T Consensus 16 ~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~v~~-~~-~~~~~~------g~-~~g---------~afV~f~- 66 (101)
T 1fj7_A 16 TPFNLFIGNLNPNK----------SVAELKVAISELFAKND-LA-VVDVRT------GT-NRK---------FGYVDFE- 66 (101)
T ss_dssp CSEEEEEECCCTTS----------CHHHHHHHHHHHHHHHT-CC-CCEEEE------ET-TTT---------EEEEEES-
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHHhCCcce-EE-EecCCC------CC-cCc---------EEEEEEC-
Confidence 45699999999654 67889999999999988 33 333211 11 111 2899999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++ |.|..
T Consensus 67 --~~~~a~~A~~-l~g~~ 81 (101)
T 1fj7_A 67 --SAEDLEKALE-LTGLK 81 (101)
T ss_dssp --SHHHHHHHHH-GGGCC
T ss_pred --CHHHHHHHHh-cCCcE
Confidence 9999999999 99988
No 179
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.95 E-value=0.0024 Score=48.95 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=52.0
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCccee-ecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIRE-VDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~-vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
....-+|++.|||-.+ +|.-|+..|+.||.|.+ |.|+.. +- +. .+ =-|||+
T Consensus 12 ~~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~v~~~v~i~~~-~~-------g~-~~---------G~afV~ 63 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGC----------SKEEIVQFFSGLEIVPNGMTLPVD-FQ-------GR-ST---------GEAFVQ 63 (104)
T ss_dssp CSCCCEEEEESCCTTC----------CHHHHHHHTTTCCEEEEEEECCBC-SS-------SC-BC---------SEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhcCCcceeEEEEEC-CC-------CC-cc---------eEEEEE
Confidence 3456799999999653 68889999999999987 888653 11 11 11 148999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|. ...+-.+|++. .|..
T Consensus 64 F~---~~~~a~~A~~~-~~~~ 80 (104)
T 1wg5_A 64 FA---SQEIAEKALKK-HKER 80 (104)
T ss_dssp ES---SHHHHHHHHTT-TTCC
T ss_pred EC---CHHHHHHHHHh-Ccch
Confidence 99 99999999987 6665
No 180
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.95 E-value=0.0017 Score=52.31 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=46.4
Q ss_pred Ce-EEeCCCcccccccCCCCCCCcH--HHHHHHHhcc-CcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 154 DT-IYLSNLPVKWFSTKARPNQPSE--AMLRRVFQNY-GDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 154 DT-I~l~gLP~rWFa~~~~~~kPSe--~vl~~VFe~F-G~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
+| ||+.|||.++ ++.+ .-|+++|+.| |+|-.| . + --|||+|
T Consensus 9 ~T~lYV~NL~~~~--------~~~~lk~~L~~lF~~yGG~Vl~V------------t--g-------------G~AfV~F 53 (96)
T 2diu_A 9 HTLLYVYNLPANK--------DGKSVSNRLRRLSDNCGGKVLSI------------T--G-------------CSAILRF 53 (96)
T ss_dssp SEEEEEESCCTTS--------CHHHHHHHHHHHHHTTTCCEEEC------------C--T-------------TCEEEEE
T ss_pred ceEEEEeCCCCcC--------CHHHHHHHHHHHHHHcCCeeEEE------------e--c-------------CEEEEEE
Confidence 56 9999999876 1221 2378999999 599877 1 1 2389999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
. +-++-.+|++.|.|..
T Consensus 54 ~---~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 54 I---NQDSAERAQKRMENED 70 (96)
T ss_dssp S---SHHHHHHHHHHHTTCC
T ss_pred C---CHHHHHHHHHHhcCCc
Confidence 9 9999999999999999
No 181
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=96.94 E-value=0.0044 Score=46.63 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=46.1
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
..-|-||++.|||-.. +|+-|+.+|++||+|..|.|+.. . ++ =|||+|
T Consensus 8 ~~~~~~l~V~~Lp~~~----------te~~L~~~F~~~G~i~~v~i~~~----------s---rG---------faFV~F 55 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDM----------TAEELQQFFCQYGEVVDVFIPKP----------F---RA---------FAFVTF 55 (89)
T ss_dssp ---CCEEEEESCCTTC----------CHHHHHHHHTTTSCEEEEECCSS----------C---CS---------EEEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHhccCCEEEEEEeeC----------C---CC---------EEEEEE
Confidence 3557799999999765 78999999999999999999761 1 22 278999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
+ +..+-. +|.|..
T Consensus 56 ~---~~~~A~----~~~~~~ 68 (89)
T 3d2w_A 56 A---DDKVAQ----SLCGED 68 (89)
T ss_dssp S---CHHHHH----HHTTCE
T ss_pred C---CHHHHH----HHcCCC
Confidence 9 877643 567776
No 182
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.94 E-value=0.0026 Score=46.86 Aligned_cols=60 Identities=23% Similarity=0.391 Sum_probs=45.3
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-||++.|||..+ +++-|+.+|+.||+|..|.|+.. .++| |||+|.
T Consensus 3 ~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~-------------~~g~---------afV~f~ 50 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDM----------TEDELREFFSQYGDVMDVFIPKP-------------FRAF---------AFVTFA 50 (88)
T ss_dssp SCCCEEEEESCCSSS----------CHHHHHHHSTTTSCCCEEECCSS-------------CCSC---------CEEECS
T ss_pred CCCcEEEEeCCCCCC----------CHHHHHHHHHHcCCeeEEEEecC-------------CCCE---------EEEEEC
Confidence 356799999999665 68889999999999999999741 1222 799999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+- +.+.|..
T Consensus 51 ---~~~~a----~~~~~~~ 62 (88)
T 1wf0_A 51 ---DDQIA----QSLCGED 62 (88)
T ss_dssp ---CHHHH----HHTTTCE
T ss_pred ---CHHHH----HHHhcCC
Confidence 76654 3456665
No 183
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.87 E-value=0.003 Score=50.99 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=61.0
Q ss_pred CCeEEeCCC--cccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 153 PDTIYLSNL--PVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 153 PDTI~l~gL--P~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
--+|+|.|+ |-.|. .+ -++-++..|++||+|.+|.||...+- . ...+...-.+||+|.
T Consensus 20 s~vl~L~Nm~~~~el~-----dd--leedl~eef~k~G~V~~v~I~~~~~~--------~-----~~~~~~~G~~FV~F~ 79 (118)
T 3ue2_A 20 STVMVLRNMVDPKDID-----DD--LEGEVTEECGKFGAVNRVIIYQEKQG--------E-----EEDAEIIVKIFVEFS 79 (118)
T ss_dssp CCEEEEESCSCGGGCC-----TT--HHHHHHHHHTTTSCEEEEEEEEEEES--------S-----STTCEEEEEEEEEES
T ss_pred CCEEEEECCCCHHHHH-----HH--HHHHHHHHHhccCCEeEEEEeecCCC--------c-----ccCCcceEEEEEEEC
Confidence 358899998 33332 11 46779999999999999999752110 0 001123457999999
Q ss_pred CCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEE
Q psy6597 231 PGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYV 275 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~ 275 (305)
.-.+-.+|+++|.|+. + +| +.+.|.|.
T Consensus 80 ---~~e~A~~Ai~~LnGr~----f-----~G------R~i~v~~~ 106 (118)
T 3ue2_A 80 ---IASETHKAIQALNGRW----F-----AG------RKVVAEVY 106 (118)
T ss_dssp ---SHHHHHHHHHHHTTCE----E-----TT------EECEEEEE
T ss_pred ---CHHHHHHHHHHHCCCE----E-----CC------cEEEEEEc
Confidence 9999999999999999 4 36 47888774
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.71 E-value=0.0029 Score=57.46 Aligned_cols=70 Identities=17% Similarity=0.114 Sum_probs=53.8
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
--||++.|||...-. +.....-.|..|+.+|+.||+|..|.|+. . ++ =|||+|.
T Consensus 134 ~rtLfVgnL~~~~~~-~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----------~---kG---------~AFV~F~-- 187 (240)
T 3u1l_A 134 NKTLYVGGIDGALNS-KHLKPAQIESRIRFVFSRLGDIDRIRYVE-----------S---KN---------CGFVKFK-- 187 (240)
T ss_dssp CCEEEEECTTGGGTT-CCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----------G---GT---------EEEEEES--
T ss_pred CceeecCCCChhhhc-ccccccCcHHHHHHHHHccCCEEEEEEEC-----------C---CC---------EEEEEeC--
Confidence 459999999976411 01011126899999999999999999952 1 21 1899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+--+|+++|.|..
T Consensus 188 -~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 188 -YQANAEFAKEAMSNQT 203 (240)
T ss_dssp -SHHHHHHHHHHHTTCC
T ss_pred -CHHHHHHHHHHhCCCE
Confidence 9999999999999999
No 185
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.68 E-value=0.0043 Score=50.60 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=50.1
Q ss_pred CCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecC
Q psy6597 152 RPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLP 231 (305)
Q Consensus 152 RPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~ 231 (305)
..-||++.|||-.+ ++.-|+..|+.||+|..|.|+.. + ..+ .-.--|||+|.
T Consensus 12 ~~~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~~~-~--------~~g--------~~~g~afV~f~- 63 (196)
T 1l3k_A 12 QLRKLFIGGLSFET----------TDESLRSHFEQWGTLTDCVVMRD-P--------NTK--------RSRGFGFVTYA- 63 (196)
T ss_dssp GGGEEEEESCCTTC----------CHHHHHHHHGGGSCEEEEEEEEC-T--------TTC--------CEEEEEEEEES-
T ss_pred CCCEEEEeCCCCCC----------CHHHHHHHHHhCCCEEEEEEEEc-C--------CCC--------CccceEEEEeC-
Confidence 34599999999755 57789999999999999998431 1 111 11234899999
Q ss_pred CCChhHHHHHHHHHhCCC
Q psy6597 232 GTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 232 ~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+||+. .|..
T Consensus 64 --~~~~A~~A~~~-~~~~ 78 (196)
T 1l3k_A 64 --TVEEVDAAMNA-RPHK 78 (196)
T ss_dssp --SHHHHHHHHHT-CSCE
T ss_pred --CHHHHHHHHhc-CCCE
Confidence 99999999987 4443
No 186
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.63 E-value=0.0023 Score=55.00 Aligned_cols=61 Identities=7% Similarity=0.070 Sum_probs=46.7
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||.. .++.-|+.+|+.||+|.+|.||..- .+..+ -=|||.|+
T Consensus 110 ~~l~V~nLp~~----------~t~~~L~~~F~~~G~v~~v~i~~~~---------~~~~k---------G~aFVeF~--- 158 (193)
T 2voo_A 110 RSVYIKGFPTD----------ATLDDIKEWLEDKGQVLNIQMRRTL---------HKAFK---------GSIFVVFD--- 158 (193)
T ss_dssp TEEEEECCCTT----------CCHHHHHHHHTTSCCEEEEEEEECT---------TCCEE---------EEEEEEES---
T ss_pred CEEEecCCCCc----------CCHHHHHHHHhcCCCEEEEEEEECC---------CCCcc---------cEEEEEEC---
Confidence 48999999953 3688899999999999999997521 11112 23899999
Q ss_pred ChhHHHHHHHHH
Q psy6597 234 DHVTMFIQVDII 245 (305)
Q Consensus 234 ey~~F~kAM~aL 245 (305)
...+-.+|++.+
T Consensus 159 ~~e~A~~A~~~~ 170 (193)
T 2voo_A 159 SIESAKKFVETP 170 (193)
T ss_dssp SHHHHHHHHHCT
T ss_pred CHHHHHHHHHhC
Confidence 999888888654
No 187
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.62 E-value=0.0025 Score=50.21 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=44.3
Q ss_pred ccccccCC--CCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHH
Q psy6597 163 VKWFSTKA--RPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFI 240 (305)
Q Consensus 163 ~rWFa~~~--~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~k 240 (305)
++|-..+. .+..-+|..|+.+|++||+|..|.|+ + . .++ =|||+|+ ...+-.+
T Consensus 15 v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~---~-----~rG---------faFVeF~---~~~~A~~ 69 (100)
T 2d9o_A 15 LKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----S---K-----KPG---------TAVVEFA---TVKAAEL 69 (100)
T ss_dssp EECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----S---S-----SSS---------EEEEEES---CHHHHHH
T ss_pred EeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----c---C-----CCC---------EEEEEEC---CHHHHHH
Confidence 35755443 23556899999999999999999996 1 1 021 2899999 9999888
Q ss_pred HHHHHhC
Q psy6597 241 QVDIISG 247 (305)
Q Consensus 241 AM~aLrG 247 (305)
||+.+.|
T Consensus 70 Ai~~~~~ 76 (100)
T 2d9o_A 70 AVQNEVG 76 (100)
T ss_dssp HHHTCCB
T ss_pred HHHhcCC
Confidence 8887433
No 188
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=96.61 E-value=0.0043 Score=49.90 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=47.1
Q ss_pred HHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCCccceeeee
Q psy6597 178 AMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMDYTTIIMLK 257 (305)
Q Consensus 178 ~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk~~~~L~~K 257 (305)
+-++..|++||+|..|.|+... . .+ -+||+|. .-.+-.+|+++|.|+. +
T Consensus 32 edl~~~f~kfG~V~~v~i~~~~---------~---~G---------~~fV~f~---~~e~A~~Ai~~lnG~~----f--- 80 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVDKNS---------A---QG---------NVYVKCP---SIAAAIAAVNALHGRW----F--- 80 (114)
T ss_dssp HHHHHHHTTTTCCSEEEECTTC---------T---TC---------CEEEECS---SHHHHHHHHHHHTTCE----E---
T ss_pred HHHHHHHhccCCEEEEEEecCC---------C---cE---------EEEEEEC---CHHHHHHHHHHhCCCE----E---
Confidence 3578999999999999985421 1 11 2799999 9999999999999999 5
Q ss_pred cccCCCCCCcceEEEEEE
Q psy6597 258 ASRKTSGGASKSMCVTYV 275 (305)
Q Consensus 258 ~~dg~~~~~~~~~~~~~~ 275 (305)
+| +.+.|+|.
T Consensus 81 --~G------R~i~v~~~ 90 (114)
T 3s6e_A 81 --AG------KMITAAYV 90 (114)
T ss_dssp --TT------EECEEEEE
T ss_pred --CC------EEEEEEEE
Confidence 36 47888875
No 189
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=95.62 E-value=0.00033 Score=54.43 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=50.4
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCccee--------ecCCCCCccccccccCCCCCccccCCCceeEE
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIRE--------VDIPINDPYRAQMKPYISGMTLFSHAQSLIFK 224 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~--------vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Fe 224 (305)
.-||++.|||..+ ++.-|+.+|+.||.|.. |.|+.. +. .+..+ --
T Consensus 7 ~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~-~~-------~g~~~---------g~ 59 (116)
T 2lcw_A 7 NNTIFVQGLGENV----------TIESVADYFKQIGIIKTNKKTGQPMINLYTD-RE-------TGKLK---------GE 59 (116)
Confidence 4589999999654 45569999999999998 666532 10 01111 13
Q ss_pred EEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 225 TQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 225 ayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
|||+|. ...+-.+|++.|.|..
T Consensus 60 afV~f~---~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 60 ATVSFD---DPPSAKAAIDWFDGKE 81 (116)
Confidence 899999 9999999999999987
No 190
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=96.58 E-value=0.0033 Score=49.85 Aligned_cols=70 Identities=10% Similarity=-0.001 Sum_probs=54.8
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
-|++.||+. .-+|+.|+..|+.||+|.++.+.. . ++| |||.|. .
T Consensus 9 wL~VgNL~~----------~~te~~L~~lF~q~G~V~~~~l~~-----------~---kGf---------aFVey~---~ 52 (89)
T 2wbr_A 9 WLLLKNLTA----------QIDGPTLRTLCMQHGPLVSFHPYL-----------N---QGI---------ALCKYT---T 52 (89)
T ss_dssp EEEEECCCT----------TCCCHHHHHHHHHHSCEEEEEEET-----------T---TTE---------EEEEES---S
T ss_pred eEEEeCCCc----------cCCHHHHHHHHHhhCCEEEEEEcC-----------C---CcE---------EEEEEC---C
Confidence 466666654 468899999999999999999843 1 222 689999 9
Q ss_pred hhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEE
Q psy6597 235 HVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYV 275 (305)
Q Consensus 235 y~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~ 275 (305)
-.+-.+|+++|.|.+ |. | +.|+|++.
T Consensus 53 ~~eA~~Ai~~Ln~~~----l~-----g------r~I~V~~A 78 (89)
T 2wbr_A 53 REEANKAQMALNNCV----LA-----N------TTIFAESP 78 (89)
T ss_dssp HHHHHHHHHHHTTEE----ET-----T------EEEEEECC
T ss_pred HHHHHHHHHHhcCCE----EC-----C------cEEEEEEC
Confidence 999999999999988 62 5 37777765
No 191
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.51 E-value=0.0073 Score=47.18 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=37.8
Q ss_pred HHHHH-hccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 180 LRRVF-QNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 180 l~~VF-e~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
++..| ++||+|.+|.|+.. + .+ ...--|||+|. ...+-.+|+++|.|+.
T Consensus 43 l~~~f~~~~G~V~~v~i~~~-~--------~~---------~~~G~~fV~f~---~~~~A~~A~~~lng~~ 92 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCDN-L--------GD---------HLVGNVYVKFR---REEDAEKAVIDLNNRW 92 (104)
T ss_dssp HHHHHHHHTCCEEEEEECCS-S--------SS---------SSEEEEEEEES---CHHHHHHHHHHHTTCE
T ss_pred HHHHhhccCCceEEEEEEeC-C--------CC---------CccEEEEEEEC---CHHHHHHHHHHHCCCE
Confidence 34445 99999999999741 1 01 11234899999 9999999999999998
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.51 E-value=0.0046 Score=48.06 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=49.5
Q ss_pred CCeEEeCCC--cccccccCCCCCCC-----cHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEE
Q psy6597 153 PDTIYLSNL--PVKWFSTKARPNQP-----SEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKT 225 (305)
Q Consensus 153 PDTI~l~gL--P~rWFa~~~~~~kP-----Se~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Fea 225 (305)
--||+|.|| |..+- +.| .++.|+..|++||+|..|.|+ |. . .++| |
T Consensus 15 s~~l~l~Nl~~~~~~~------~~~~~~~~~e~~l~~~f~~~G~v~~v~i~--~~---~-------~~G~---------a 67 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFE------DDPLVLNEIREDLRVECSKFGQIRKLLLF--DR---H-------PDGV---------A 67 (112)
T ss_dssp CCEEEEESSCCTTHHH------HCSHHHHHHHHHHHHHGGGTSCCSEEEEE--TT---C-------TTCE---------E
T ss_pred ceEEEEEcCCCHHHhc------cCHHHHHHHHHHHHHHHHccCCEeEEEEe--cC---C-------CCEE---------E
Confidence 357999999 32221 112 257899999999999999773 21 0 1211 8
Q ss_pred EEeecCCCChhHHHHHHHHHhCCC
Q psy6597 226 QLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 226 yVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
||+|. ...+-.+|++.|.|+.
T Consensus 68 fV~f~---~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 68 SVSFR---DPEEADYCIQTLDGRW 88 (112)
T ss_dssp EEECS---CHHHHHHHHHHSTTCE
T ss_pred EEEEC---CHHHHHHHHHHcCCCE
Confidence 99999 9999999999999998
No 193
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.46 E-value=0.012 Score=56.07 Aligned_cols=81 Identities=11% Similarity=0.084 Sum_probs=60.7
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
+--.+|++.|+...| .-+|+.|+.+|++||+|.+|.||. +.| =+||+|+
T Consensus 16 ~ps~~l~VgN~gl~~--------~~te~~L~~~F~~~G~V~~v~~~~-----------~kg------------faFV~f~ 64 (345)
T 3tht_A 16 YATQSLVVANGGLGN--------GVSRNQLLPVLEKCGLVDALLMPP-----------NKP------------YSFARYR 64 (345)
T ss_dssp SCCSEEEEETCSGGG--------TCCHHHHHHHHHTTSCEEEEECCT-----------TCS------------EEEEEES
T ss_pred CCCCEEEEEcCCCCC--------CCCHHHHHHHHHhcCCeEEEEEeC-----------CCC------------EEEEEEC
Confidence 334799998865444 357899999999999999998863 111 3799999
Q ss_pred CCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEE
Q psy6597 231 PGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYV 275 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~ 275 (305)
.-.+-.+||++|.|.. ++ + +.|+++.+.++|.
T Consensus 65 ---~~~~A~~Ai~~lnG~~----~~-~-----~~g~~~~ly~~~~ 96 (345)
T 3tht_A 65 ---TTEESKRAYVTLNGKE----VV-D-----DLGQKITLYLNFV 96 (345)
T ss_dssp ---SHHHHHHHHHHTTTCE----EE-C-----TTSCEEECEEEEC
T ss_pred ---CHHHHHHHHHHhCCCc----cc-c-----ccCCceEEEEEEe
Confidence 9999999999999999 64 1 1233445666665
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.36 E-value=0.0063 Score=53.46 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=51.0
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||..+ ++..|+.+|+.||.|..|.|. .+ + --|||+|.
T Consensus 23 ~~l~V~nLp~~~----------te~~l~~~F~~~G~i~~v~i~---------~~-----k---------g~afV~f~--- 66 (261)
T 3sde_A 23 CRLFVGNLPTDI----------TEEDFKRLFERYGEPSEVFIN---------RD-----R---------GFGFIRLE--- 66 (261)
T ss_dssp GEEEEESCCTTC----------CHHHHHHHTGGGCCCSEEEEE---------TT-----T---------TEEEEECS---
T ss_pred CEEEEECCCCCC----------CHHHHHHHHHhcCCEEEEEEe---------CC-----C---------cEEEEEEC---
Confidence 389999999654 688999999999999999982 11 1 14899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|++.|.|..
T Consensus 67 ~~~~A~~A~~~l~g~~ 82 (261)
T 3sde_A 67 SRTLAEIAKAELDGTI 82 (261)
T ss_dssp SHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHcCCcE
Confidence 9999999999999987
No 195
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.30 E-value=0.0063 Score=46.95 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=49.8
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEee
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGK 229 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy 229 (305)
...+-||++.|||... +|.-|+..|+.||.| .|.|+.. + + +. -.=-|||+|
T Consensus 12 ~~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~~-~v~i~~d-~-----~--g~----------~~G~afV~F 62 (102)
T 1wez_A 12 STTGHCVHMRGLPYRA----------TENDIYNFFSPLNPM-RVHIEIG-P-----D--GR----------VTGEADVEF 62 (102)
T ss_dssp CSSSCEEEEESCCTTC----------CHHHHHHSSCSCCCS-EEEEEES-S-----S--SC----------EEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHHcCce-EEEEEEC-C-----C--CC----------EeeEEEEEE
Confidence 4556799999999653 578899999999965 8888542 1 1 11 123589999
Q ss_pred cCCCChhHHHHHHHHHhCCC
Q psy6597 230 LPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 230 ~~~~ey~~F~kAM~aLrGmk 249 (305)
+ ...+-.+||+ +.|..
T Consensus 63 ~---~~~~a~~Al~-~~~~~ 78 (102)
T 1wez_A 63 A---THEDAVAAMA-KDKAN 78 (102)
T ss_dssp S---SSHHHHHHHT-TSSCC
T ss_pred C---CHHHHHHHHH-hCCCe
Confidence 9 9999999994 56655
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.95 E-value=0.0086 Score=48.21 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=55.6
Q ss_pred cCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCcee
Q psy6597 143 NMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLI 222 (305)
Q Consensus 143 ~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~ 222 (305)
+|.+......+-||++.|||..+ ++.-|+..|+.||.|.. +.+.|+... .. ++
T Consensus 3 h~~~~~~~~~~~~l~V~nLp~~~----------t~~~l~~~f~~~g~~~~--~~~~~~~~~------~~-~g-------- 55 (175)
T 1fje_B 3 HMVEGSESTTPFNLFIGNLNPNK----------SVAELKVAISELFAKND--LAVVDVRTG------TN-RK-------- 55 (175)
T ss_dssp CCCSSSSCSSSEEEEEECCCTTS----------CHHHHHHHHHHHHHHHT--CCCCEEEEE------TT-TT--------
T ss_pred ccccCCCCCCCcEEEEeCCCCCC----------CHHHHHHHHHHhCCcce--EEEEECCCC------cc-cc--------
Confidence 45555566777899999999765 57789999999999977 444443211 11 11
Q ss_pred EEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 223 FKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 223 FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
-|||+|. ...+-.+|| .|.|..
T Consensus 56 -~afV~f~---~~~~a~~A~-~l~g~~ 77 (175)
T 1fje_B 56 -FGYVDFE---SAEDLEKAL-ELTGLK 77 (175)
T ss_dssp -EEEEEES---SHHHHHHHH-HGGGEE
T ss_pred -EEEEEEC---CHHHHHHHH-hcCCCE
Confidence 4899999 999999999 488877
No 197
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.92 E-value=0.015 Score=48.09 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=47.7
Q ss_pred eEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCCC
Q psy6597 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGTD 234 (305)
Q Consensus 155 TI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~e 234 (305)
.|++.|||. +..|+.-|+.+|+.||+|..||+...|+ ++||-|. +
T Consensus 20 il~v~~l~~---------~~~sredLke~F~~~G~V~~Vd~~~g~~-----------------------tgfVrf~---~ 64 (121)
T 1owx_A 20 LLKFSGDLD---------DQTCREDLHILFSNHGEIKWIDFVRGAK-----------------------EGIILFK---E 64 (121)
T ss_dssp EEEEEESCC---------SSCCHHHHHHHTCSSCCEEEEECCTTCS-----------------------EEEEEES---S
T ss_pred EEEEecCCC---------CcCCHHHHHHHHHhcCCEEEEEEecCCC-----------------------EEEEEEC---C
Confidence 356777652 4478999999999999999999954221 2999999 8
Q ss_pred -hhHHHHHHHHHhCCC
Q psy6597 235 -HVTMFIQVDIISGMD 249 (305)
Q Consensus 235 -y~~F~kAM~aLrGmk 249 (305)
..+-.+|+++|..-+
T Consensus 65 ~~~~A~~av~~ln~~~ 80 (121)
T 1owx_A 65 KAKEALGKAKDANNGN 80 (121)
T ss_dssp CHHHHHHHHHHTTTSC
T ss_pred ChHHHHHHHHHhhcCC
Confidence 788888999887666
No 198
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=95.88 E-value=0.02 Score=47.15 Aligned_cols=68 Identities=9% Similarity=-0.052 Sum_probs=51.9
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCc---ceeecCCCCCccccccccCCCCCccccCCCceeEEEE
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGD---IREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQ 226 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~---IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Feay 226 (305)
....-+|++.|||.. -+|.-|+..|+.||. |..|.|+.+ + .+. -.=-||
T Consensus 41 ~~~~~~lfVgnLp~~----------~te~dL~~~F~~~G~v~~v~~v~i~~d-~--------~g~---------srG~aF 92 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWS----------CSVEDVQNFLSDCTIHDGAAGVHFIYT-R--------EGR---------QSGEAF 92 (136)
T ss_dssp CCTTCEEEEESCCTT----------CCHHHHHHHTTTCCCSSSSTTEEEEEC-S--------SSC---------EEEEEE
T ss_pred CCCCCEEEEeCCCCC----------CCHHHHHHHHHHhCCcCceeEEEEEEC-C--------CCC---------CCeEEE
Confidence 455678999999964 368889999999999 888888541 1 011 122589
Q ss_pred EeecCCCChhHHHHHHHHHhCCC
Q psy6597 227 LGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 227 VQy~~~~ey~~F~kAM~aLrGmk 249 (305)
|+|. ...+..+|++ |.|..
T Consensus 93 V~F~---~~e~a~~Al~-~~g~~ 111 (136)
T 2hgl_A 93 VELG---SEDDVKMALK-KDRES 111 (136)
T ss_dssp EECS---SHHHHHHHHT-TTEEE
T ss_pred EEEC---CHHHHHHHHh-cCCCE
Confidence 9999 9999999998 77765
No 199
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=95.64 E-value=0.012 Score=48.73 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=48.3
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
...-||++.|||... +|+-|+..|+.|| |..|.|+.+ +- +. .++ -|||+|+
T Consensus 44 ~~~~~lfV~nLp~~~----------te~dL~~~F~~~G-i~~v~i~~d-~~-------g~-srG---------faFV~F~ 94 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKA----------TENDIYNFFSPLN-PVRVHIEIG-PD-------GR-VTG---------EADVEFA 94 (139)
T ss_dssp -CCCCEECCSCCTTC----------CHHHHHHHHCSCC-CSEEECCCS-SS-------SC-SSC---------CCEEECS
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHHhcC-CeEEEEEEC-CC-------CC-Cce---------EEEEEeC
Confidence 445689999999654 6888999999999 668988653 10 11 121 3699999
Q ss_pred CCCChhHHHHHHHHHhCCC
Q psy6597 231 PGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|| .+.|..
T Consensus 95 ---~~e~A~~Al-~~~g~~ 109 (139)
T 2hgn_A 95 ---THEEAVAAM-SKDRAN 109 (139)
T ss_dssp ---HHHHHHHHT-TCCSCS
T ss_pred ---CHHHHHHHH-hhCCCE
Confidence 999999998 666655
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=95.41 E-value=0.011 Score=48.27 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=48.4
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCC
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPG 232 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~ 232 (305)
.-||++.|||-.+ +++-|+.+|+.||+|..+-+...++.+..-. +.+ + --|||+|.
T Consensus 4 ~~~l~V~nLp~~~----------te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~~-~---------g~afV~F~-- 59 (198)
T 2yh0_A 4 ARRLYVGNIPFGI----------TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQD-K---------NFAFLEFR-- 59 (198)
T ss_dssp CCEEEEESCCTTC----------CHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ETT-T---------TEEEEEES--
T ss_pred eeEEEEcCCCCCC----------CHHHHHHHHHHHHhhcccccCCCCceEEeEe--cCC-C---------CEEEEEeC--
Confidence 4589999999764 6788999999998765543311112221111 111 1 13899999
Q ss_pred CChhHHHHHHHHHhCCC
Q psy6597 233 TDHVTMFIQVDIISGMD 249 (305)
Q Consensus 233 ~ey~~F~kAM~aLrGmk 249 (305)
...+-.+|| .|.|..
T Consensus 60 -~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 60 -SVDETTQAM-AFDGII 74 (198)
T ss_dssp -CSHHHHHHG-GGTTEE
T ss_pred -CHHHHHHHH-HhcCCE
Confidence 999999999 888876
No 201
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.25 E-value=0.017 Score=45.98 Aligned_cols=74 Identities=11% Similarity=0.219 Sum_probs=56.1
Q ss_pred eEEeCCCcc----cccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec
Q psy6597 155 TIYLSNLPV----KWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL 230 (305)
Q Consensus 155 TI~l~gLP~----rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~ 230 (305)
||.+.-.|. .||-+. -..-|.+.|+.||+|..+.|.... +||-|+
T Consensus 9 tv~V~~~~~~~~~~~fd~~------l~~~L~~~F~~~G~Vi~vr~~~d~-------------------------~fVtF~ 57 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFDDA------LIDELLQQFASFGEVILIRFVEDK-------------------------MWVTFL 57 (91)
T ss_dssp EEEEEEECSSTTTCSCCHH------HHHHHHHHHHTTCCEEEEEECSSS-------------------------EEEEES
T ss_pred eEEEEeccCccccccCCHH------HHHHHHHHHHhCCCeEEEEEecCC-------------------------EEEEEC
Confidence 777777764 344221 234489999999999999995511 699999
Q ss_pred CCCChhHHHHHHHHHhCCCccceeeeecccCCCCCCcceEEEEEEE-ec
Q psy6597 231 PGTDHVTMFIQVDIISGMDYTTIIMLKASRKTSGGASKSMCVTYVV-MC 278 (305)
Q Consensus 231 ~~~ey~~F~kAM~aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v-~~ 278 (305)
+-.+..+|++ |.|.+ + +| ++++|+++- ||
T Consensus 58 ---d~~sAlaAi~-mnG~~----v-----~G------r~LkV~lkt~dW 87 (91)
T 2dnr_A 58 ---EGSSALNVLS-LNGKE----L-----LN------RTITIALKSPSG 87 (91)
T ss_dssp ---SHHHHHHGGG-GTTCE----E-----TT------EEEEEEECCCSS
T ss_pred ---ChHHHHHHHh-cCCeE----e-----CC------eEEEEEeCCCCc
Confidence 9999999998 99988 5 35 589998876 55
No 202
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.20 E-value=0.032 Score=44.12 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=48.8
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-+|++.|||-.. +|.-|+..|+.| +|..|.|+.+ +- |.. .--|||+|.
T Consensus 17 ~~v~V~nLp~~~----------te~dl~~~F~~~-~v~~v~i~~d-~~-------g~~----------~G~afV~F~--- 64 (109)
T 2dnn_A 17 LYVSVHGMPFSA----------MENDVRDFFHGL-RVDAVHLLKD-HV-------GRN----------NGNGLVKFL--- 64 (109)
T ss_dssp HEEEEECCCSSC----------CHHHHHHHTTTS-CCCEEEECCC-TT-------CCC----------CSEEEEECS---
T ss_pred CEEEEeCCCCCC----------CHHHHHHHhccC-CeeEEEEEEC-CC-------CCC----------CeEEEEEEC---
Confidence 489999999654 688899999999 8999999753 11 111 124899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+..+|+ .+.|..
T Consensus 65 ~~~~a~~Al-~~~~~~ 79 (109)
T 2dnn_A 65 SPQDTFEAL-KRNRML 79 (109)
T ss_dssp SHHHHHHHH-HTTTEE
T ss_pred CHHHHHHHH-hcCCCe
Confidence 999999999 576655
No 203
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.16 E-value=0.022 Score=46.14 Aligned_cols=66 Identities=9% Similarity=-0.078 Sum_probs=49.0
Q ss_pred CCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcc----eeecCCCCCccccccccCCCCCccccCCCceeEEE
Q psy6597 150 GERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDI----REVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKT 225 (305)
Q Consensus 150 geRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~I----R~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Fea 225 (305)
.+.+-+|++.|||... +|+-|+..|+.||+| ..|.|+.+ + + |. -.=.|
T Consensus 20 ~~~~~~v~V~nLp~~~----------te~dl~~~F~~~g~v~g~v~~v~i~~d-~-----~--gr----------~~G~a 71 (123)
T 2dha_A 20 KENQVIVRMRGLPFTA----------TAEEVVAFFGQHCPITGGKEGILFVTY-P-----D--GR----------PTGDA 71 (123)
T ss_dssp CCSCCEEEECSCCTTC----------CHHHHHHHHHTTSCCTTGGGGEEEEEC-T-----T--SC----------EEEEE
T ss_pred CCCCCEEEEeCCCCCC----------CHHHHHHHHHhhCCccCCcceEEEEEC-C-----C--CC----------EeeEE
Confidence 3556799999999543 688899999999986 57777542 1 0 11 13369
Q ss_pred EEeecCCCChhHHHHHHHHHhC
Q psy6597 226 QLGKLPGTDHVTMFIQVDIISG 247 (305)
Q Consensus 226 yVQy~~~~ey~~F~kAM~aLrG 247 (305)
||+|. ...+-.+|++. .|
T Consensus 72 FV~F~---~~~~A~~Al~~-~~ 89 (123)
T 2dha_A 72 FVLFA---CEEYAQNALRK-HK 89 (123)
T ss_dssp EECCS---SHHHHHHHHTT-TT
T ss_pred EEEEC---CHHHHHHHHHh-CC
Confidence 99999 99999999875 44
No 204
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.052 Score=46.23 Aligned_cols=87 Identities=18% Similarity=0.128 Sum_probs=54.8
Q ss_pred CCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeec--
Q psy6597 153 PDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKL-- 230 (305)
Q Consensus 153 PDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~-- 230 (305)
|-.|++.|| +.+ .+---+|..|+..|++||+|..+.+.+ || .+ |..+-| +||-|.
T Consensus 2 p~kI~VgnL----~~~--~~~~tte~~Lk~~Fs~fGeV~~~~li~-Dp--------~T-------g~slGf-gfVef~d~ 58 (136)
T 2j8a_A 2 SCEIVVYPA----QDS--TTTNIQDISIKNYFKKYGEISHFEAFN-DP--------NS-------ALPLHV-YLIKYASS 58 (136)
T ss_dssp CCEEEEEES----SSS--CCCCCCHHHHHHHHHTTSCCSEEEEEE-CT--------TT-------CCEEEE-EEEECC--
T ss_pred CcEEEEeCC----CCC--CCCCCCHHHHHHHHHhcCCeEEEEEEe-cC--------CC-------CceeeE-EEEEECCC
Confidence 567899998 111 123457899999999999999999954 11 11 112222 577787
Q ss_pred ---CCCChhHHHHHHH--HHhCCCccceeeeecccCCCCCCcceEEEEEEEe
Q psy6597 231 ---PGTDHVTMFIQVD--IISGMDYTTIIMLKASRKTSGGASKSMCVTYVVM 277 (305)
Q Consensus 231 ---~~~ey~~F~kAM~--aLrGmk~~~~L~~K~~dg~~~~~~~~~~~~~~v~ 277 (305)
|...+....+|+. .|.|.. + +| +.|.|+++=+
T Consensus 59 ~g~~d~a~kAA~kAi~~~~lng~~----I-----~G------r~irV~ln~~ 95 (136)
T 2j8a_A 59 DGKINDAAKAAFSAVRKHESSGCF----I-----MG------FKFEVILNKH 95 (136)
T ss_dssp ----CCHHHHHHHHHHHTTTTCEE----E-----TT------EEEEEEECCT
T ss_pred CCCcchHHHHHHHHHHHhhhcCCe----e-----cC------cEEEEEECcc
Confidence 3334444777777 667766 4 46 4777775533
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.64 E-value=0.043 Score=43.66 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=46.1
Q ss_pred CeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEEEeecCCC
Q psy6597 154 DTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLGKLPGT 233 (305)
Q Consensus 154 DTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQy~~~~ 233 (305)
-||++.|||-.+ +++-|+..|+.||+|..+-+...++...... +.+ + --|||+|.
T Consensus 5 ~~l~V~nLp~~~----------t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~--~~~-~---------g~afV~f~--- 59 (172)
T 2g4b_A 5 RRLYVGNIPFGI----------TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQD-K---------NFAFLEFR--- 59 (172)
T ss_dssp GEEEEESCCTTC----------CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE--ETT-T---------TEEEEEES---
T ss_pred cEEEEcCCCccc----------CHHHHHHHHHHHhhhcccccCCCCceeeeEe--cCC-C---------CEEEEEeC---
Confidence 489999999765 6888999999996544332211111111100 010 1 13899999
Q ss_pred ChhHHHHHHHHHhCCC
Q psy6597 234 DHVTMFIQVDIISGMD 249 (305)
Q Consensus 234 ey~~F~kAM~aLrGmk 249 (305)
...+-.+|| .|.|..
T Consensus 60 ~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 60 SVDETTQAM-AFDGII 74 (172)
T ss_dssp SHHHHHHHG-GGTTCE
T ss_pred CHHHHHHHH-HhCCcE
Confidence 999999999 888877
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=94.46 E-value=0.084 Score=45.02 Aligned_cols=95 Identities=11% Similarity=0.105 Sum_probs=60.1
Q ss_pred CCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCC
Q psy6597 130 TRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYI 209 (305)
Q Consensus 130 trhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~ 209 (305)
+..+...+..... + .....+..+.|.++ +.+.. ...-.+.-++.-|++||+|..|-||...+- +
T Consensus 105 ~~~~l~~~l~~~l--~--~~~~~s~v~~l~n~----v~~~e-~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~-------~ 168 (222)
T 3dxb_A 105 SKGQLKEFLDANL--A--GSAMESTVMVLRNM----VDPKD-IDDDLEGEVTEECGKFGAVNRVIIYQEKQG-------E 168 (222)
T ss_dssp CHHHHHHHHHHHS--C--CSCCBCSEEEEESS----CCGGG-CCTTHHHHHHHHHTTTSCEEEEEEEEEECC-------S
T ss_pred ChHHHHHHHHhhc--c--ccccccccchhhcC----CCHHH-HHHHHHHHHHHHHHccCCeEEEEEecCCCC-------c
Confidence 3445555555432 1 12344556666655 23232 223356678999999999999999632110 0
Q ss_pred CCCccccCCCceeEEEEEeecCCCChhHHHHHHHHHhCCC
Q psy6597 210 SGMTLFSHAQSLIFKTQLGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 210 ~~~~~fs~~~~l~FeayVQy~~~~ey~~F~kAM~aLrGmk 249 (305)
. ..+...=.+||+|. ...+-.+|+++|.|+.
T Consensus 169 ~------~~~~~~G~~fv~f~---~~~~a~~a~~~l~gr~ 199 (222)
T 3dxb_A 169 E------EDAEIIVKIFVEFS---IASETHKAIQALNGRW 199 (222)
T ss_dssp S------TTCCEEEEEEEEES---SHHHHHHHHHHHTTCB
T ss_pred c------cCcCceeEEEEEEC---CHHHHHHHHHHhcCce
Confidence 0 01123446899999 9999999999999999
No 207
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=93.75 E-value=0.2 Score=40.86 Aligned_cols=66 Identities=11% Similarity=0.110 Sum_probs=48.5
Q ss_pred CCCCeEEeCCCcccccccCCCCCCCcHHHHHHHHhccCcce--eecCCCCCccccccccCCCCCccccCCCceeEEEEEe
Q psy6597 151 ERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIR--EVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQLG 228 (305)
Q Consensus 151 eRPDTI~l~gLP~rWFa~~~~~~kPSe~vl~~VFe~FG~IR--~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~FeayVQ 228 (305)
+..-+|++.|||... +|.-|+..|+.| .|. .|.|+.+. - |. .+ =.|||+
T Consensus 40 ~~~~~lfVgnLp~~~----------te~dL~~~F~~~-~i~~~~v~i~~d~-~-------Gr-sr---------GfaFV~ 90 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGC----------TKEEIVQFFSGL-EIVPNGITLPVDP-E-------GK-IT---------GEAFVQ 90 (126)
T ss_dssp SSCCEEEEECCCTTC----------CHHHHHHHTTTS-CEEEEEEECCCCS-S-------SS-SC---------SEEEEE
T ss_pred CCCCEEEEeCCCCCC----------CHHHHHHHHhcC-CceeeEEEEEECC-C-------CC-Cc---------eEEEEE
Confidence 445799999999654 788899999999 566 88886521 1 11 11 148999
Q ss_pred ecCCCChhHHHHHHHHHhCCC
Q psy6597 229 KLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 229 y~~~~ey~~F~kAM~aLrGmk 249 (305)
|+ ...+-.+|++. .|..
T Consensus 91 F~---~~e~A~~Al~~-~~~~ 107 (126)
T 2hgm_A 91 FA---SQELAEKALGK-HKER 107 (126)
T ss_dssp ES---STTHHHHHHTT-TTCC
T ss_pred EC---CHHHHHHHHHH-CCCE
Confidence 99 99999999985 4544
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.17 E-value=0.069 Score=42.92 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=48.9
Q ss_pred CC-eEEeCCCcc-----cccccCCCCCCCcHHHHHHHHhccCcceeecCCCCCccccccccCCCCCccccCCCceeEEEE
Q psy6597 153 PD-TIYLSNLPV-----KWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYISGMTLFSHAQSLIFKTQ 226 (305)
Q Consensus 153 PD-TI~l~gLP~-----rWFa~~~~~~kPSe~vl~~VFe~FG~IR~vDIP~lDpyr~~m~~~~~~~~~fs~~~~l~Feay 226 (305)
|| ||.+.-+|. .||-+.= ..-|.+.|+.||+|..|.|.... +|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l------~~~L~~~F~~~G~Vilvr~v~d~-------------------------~f 62 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDL------RTELMQTLGSYGTIVLVRINQGQ-------------------------ML 62 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHH------HHHHHHHHHHHSCCSEEEEETTE-------------------------EE
T ss_pred CCCeEEEEecCCcccccccCCHHH------HHHHHHHHHHCCCEEEEEEecCc-------------------------EE
Confidence 44 888888874 4664322 23389999999999999985422 99
Q ss_pred EeecCCCChhHHHHHHHHHhCCC
Q psy6597 227 LGKLPGTDHVTMFIQVDIISGMD 249 (305)
Q Consensus 227 VQy~~~~ey~~F~kAM~aLrGmk 249 (305)
|-|+ +=.+-.+|++ |-|.+
T Consensus 63 VtF~---d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 63 VTFA---DSHSALSVLD-VDGMK 81 (95)
T ss_dssp EECS---CSHHHHHHHH-GGGSE
T ss_pred EEEc---ChHHHHHHHh-cCCee
Confidence 9999 9999999999 99999
No 209
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=49.92 E-value=12 Score=28.54 Aligned_cols=89 Identities=13% Similarity=0.227 Sum_probs=35.4
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeecCC-----cceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCC
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTKST-----LEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKP 126 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~ksT-----lefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~ 126 (305)
.++.=+|.+-...+= ....++|.... --||.|+ +....+..++.|||..| .|- .|+|.-+..+.
T Consensus 16 ~~te~~L~~~F~~~G---~v~~v~i~~d~~~~kg~afV~f~----~~~~A~~Ai~~l~~~~~--~g~--~i~V~~a~~~~ 84 (115)
T 4f25_A 16 SIDNKALYDTFSAFG---NILSCKVVCDENGSKGYGFVHFE----TQEAAERAIEKMNGMLL--NDR--KVFVGRFKSRK 84 (115)
T ss_dssp TCCHHHHHHHHGGGS---CEEEEEEEEETTEEEEEEEEEES----CHHHHHHHHHHHTTCEE--TTE--ECEEEESSCCC
T ss_pred CCCHHHHHHHHhccC---CEEEEEEeecCCCCCceEEEEEC----CHHHHHHHHHHcCCCEE--CCE--EEEEEECCCcc
Confidence 455555554444321 23455665432 2378884 45557788999999875 553 45554433221
Q ss_pred CCCCCCchhHhhhhcccCCCCCCCCCCCeEEeCCCcccc
Q psy6597 127 DFPTRHDWDSYFRDAKNMNEMKPGERPDTIYLSNLPVKW 165 (305)
Q Consensus 127 dFPtrhdWdsfFrdak~m~E~kpgeRPDTI~l~gLP~rW 165 (305)
+ +. .+.........+||+.|||-.|
T Consensus 85 ~-----------~~---~~~~~~~~~~~~lyv~Nl~~~~ 109 (115)
T 4f25_A 85 E-----------RE---AELGARAKEFTNVYIKNFGPGS 109 (115)
T ss_dssp C--------------------------------------
T ss_pred c-----------cc---cccccccCCCCceEeCCCCCCc
Confidence 1 00 0011123344579999999765
No 210
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=48.27 E-value=59 Score=25.52 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCCC-CcceeeeecCC---cceEEeeccccccccHHHHHhhcCCceEEecCCCcceEEEeeccCCCCCCCC
Q psy6597 57 EVIEKIKYWAQPE-EFSSLKVTKST---LEFVRLDGEIENRSKLLPVLARLDGRTIKLSGFADGLRVRATEAKPDFPTRH 132 (305)
Q Consensus 57 EVmEkLk~~i~P~-~fs~lkV~ksT---lefiRFEgE~e~r~~~~~v~~kLdG~~lkLsGf~~~LkVra~Eak~dFPtrh 132 (305)
||.|.|+..+..- .-..++|.+.+ .-||.|+- ....+..++.|||+.+ .|= .|++.-+ ...
T Consensus 29 el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~----~e~A~~Ai~~lnG~~f--~GR----~i~v~~~-----~~~ 93 (114)
T 3s6e_A 29 EIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS----IAAAIAAVNALHGRWF--AGK----MITAAYV-----PLP 93 (114)
T ss_dssp HHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSS----HHHHHHHHHHHTTCEE--TTE----ECEEEEE-----CHH
T ss_pred HHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECC----HHHHHHHHHHhCCCEE--CCE----EEEEEEE-----cHH
Confidence 5789999988752 24567777665 23788853 3446788899999975 453 4444322 236
Q ss_pred chhHhhhhcccCCC
Q psy6597 133 DWDSYFRDAKNMNE 146 (305)
Q Consensus 133 dWdsfFrdak~m~E 146 (305)
+|.+.|-++.+-++
T Consensus 94 ~y~~~fp~a~~~~~ 107 (114)
T 3s6e_A 94 TYHNLFPDSMTATQ 107 (114)
T ss_dssp HHHHHCGGGSSCCS
T ss_pred HHHHhCccccccCc
Confidence 88888888765444
No 211
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=26.81 E-value=57 Score=24.48 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=29.0
Q ss_pred HHHHHhcCCC---CcceeeeecC--Cc-----ceEEeeccccccccHHHHHhhcCCce--EEecCC
Q psy6597 60 EKIKYWAQPE---EFSSLKVTKS--TL-----EFVRLDGEIENRSKLLPVLARLDGRT--IKLSGF 113 (305)
Q Consensus 60 EkLk~~i~P~---~fs~lkV~ks--Tl-----efiRFEgE~e~r~~~~~v~~kLdG~~--lkLsGf 113 (305)
|.|+++..+- ....+++.+. |- -||.|+ +....+..++.|||.. ++|.|=
T Consensus 24 e~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~----~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 24 DSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLS----SAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp HHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECS----SSHHHHHHHHHHHSSSSCEEETTE
T ss_pred HHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEEC----CHHHHHHHHHHhcCCCCCceECCE
Confidence 4455555542 3456666543 22 378885 4445677788877764 566664
No 212
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=22.30 E-value=16 Score=33.97 Aligned_cols=15 Identities=13% Similarity=0.076 Sum_probs=11.4
Q ss_pred eecCCCChhHHHHHH
Q psy6597 228 GKLPGTDHVTMFIQV 242 (305)
Q Consensus 228 Qy~~~~ey~~F~kAM 242 (305)
.|+||++|.+|++.+
T Consensus 260 ~y~pg~~y~~fv~~l 274 (279)
T 3qwe_A 260 PFEPGQRYQEFVRAL 274 (279)
T ss_dssp TCCTTHHHHHHHHHC
T ss_pred CCCCchhHHHHHHhC
Confidence 477888888888765
No 213
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.17 E-value=2e+02 Score=21.13 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=38.4
Q ss_pred cCchHHHHHHHHHhcCCCCcceeeeecCCcceEEeeccccccccHHHHHhhcCCceEEe-cCCCcceEEEeec
Q psy6597 52 SLSNYEVIEKIKYWAQPEEFSSLKVTKSTLEFVRLDGEIENRSKLLPVLARLDGRTIKL-SGFADGLRVRATE 123 (305)
Q Consensus 52 sISnWEVmEkLk~~i~P~~fs~lkV~ksTlefiRFEgE~e~r~~~~~v~~kLdG~~lkL-sGf~~~LkVra~E 123 (305)
.++.=||.+-+..+= ....++|.+.-.-||.|+ +....+..++.|||..|.= .+-.-.|+|..+.
T Consensus 26 ~~t~~~l~~~F~~~G---~i~~~~i~~~g~afV~f~----~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 26 SGSWQDLKDHMREAG---DVCYADVYRDGTGVVEFV----RKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SCCHHHHHHHHGGGS---CEEEEEEETTTEEEEEES----SHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCHHHHHHHHHhcC---CEeEEEEecCCEEEEEEC----CHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 455555554444332 245667766656678884 4455778899999998752 1122445665543
No 214
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=22.14 E-value=17 Score=31.17 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=19.5
Q ss_pred HHHHhhcCCceEEecCCCcceEE
Q psy6597 97 LPVLARLDGRTIKLSGFADGLRV 119 (305)
Q Consensus 97 ~~v~~kLdG~~lkLsGf~~~LkV 119 (305)
-.++..|||+.++|.||.-+|..
T Consensus 46 ~~v~~~LdGk~VripGfvvPLe~ 68 (150)
T 4hsp_A 46 APVVKALDGIEAKLPGYIVPLEI 68 (150)
T ss_dssp CCCCGGGTTEEEEEEEEEEEEEE
T ss_pred cccchhhCCCEEEeccEEEEecc
Confidence 46788999999999999777754
Done!