RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6597
         (305 letters)



>d1vqoy1 c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 142

 Score = 28.9 bits (65), Expect = 0.42
 Identities = 8/23 (34%), Positives = 8/23 (34%), Gaps = 1/23 (4%)

Query: 117 LRVRATEAKPDFPTRHDWDSYFR 139
           L  R    KP F  R D     R
Sbjct: 23  LTQRHRVGKPQF-NRQDHHKKKR 44


>d1gnxa_ c.1.8.4 (A:) Beta-glucosidase A {Streptomyces sp. [TaxId:
           1931]}
          Length = 464

 Score = 28.2 bits (62), Expect = 1.3
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 155 TIYLSNLPVKWFSTKARPNQ----PSEAMLRRVFQNYGDIREVDIPINDPYRAQMKPYIS 210
           T+Y  +LP +  +    P +                 GD  +    +N+P+ +    Y S
Sbjct: 116 TLYHWDLPQELENAGGWPERATAERFAEYAAIAADALGDRVKTWTTLNEPWCSAFLGYGS 175

Query: 211 GMTLFSH 217
           G+     
Sbjct: 176 GVHAPGR 182


>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 89

 Score = 25.4 bits (55), Expect = 3.5
 Identities = 4/47 (8%), Positives = 13/47 (27%), Gaps = 9/47 (19%)

Query: 155 TIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPY 201
            +++ +             +     L ++ + +G I    I      
Sbjct: 10  VVHIMDFQ---------RGKNLRYQLLQLVEPFGVISNHLILNKINE 47


>d2d9ra1 b.129.2.1 (A:20-104) Hypothetical protein PG0164
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 85

 Score = 25.1 bits (55), Expect = 4.2
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 68  PEEFSSL--KVTKSTLEFVRLDGEI--ENRSKLLPVLARLDGRTIKLSGFADG 116
           P EF ++  +V      +V +  ++        + V A  DG          G
Sbjct: 2   PIEFDAIIRQVPDMDAAYVEIPFDVKTVYGKGRVRVNATFDGYPYTGYIVRMG 54


>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 90

 Score = 25.0 bits (54), Expect = 4.6
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 10/60 (16%)

Query: 147 MKPGERPDTIYLSNLPVKWFSTKARPNQPSEAMLRRVFQNYGDIREVDIPINDPYRAQMK 206
           M+   +P T+Y+ NL              +E ++ ++F   G  +   +           
Sbjct: 2   MEDDGQPRTLYVGNLSRDV----------TEVLILQLFSQIGPCKSCKMITEHTSNDPYC 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,106,228
Number of extensions: 50845
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 7
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)