BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6598
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+P+ C F+ TN H+RIH+G+KP+ C++ C + F++++ L +H H+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHTGE 60
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRE 89
+PF CD C R + L T + H K + R+
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
E+PY C V C +RF++ ++L H +H+ +PF C C R++ Q LN H +T+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH 57
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
+C SF+ + H R H+GEKPY C +C K F++ ++L H H+ +P+ C C
Sbjct: 54 ECGKSFSDKKDLTRHQRTHTGEKPYKCP--ECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 70 PRSYRQLCTLNVHKKTNHRESKNKKP 95
+S+ QL L H++T+ E K P
Sbjct: 112 GKSFSQLAHLRAHQRTHTGEKPYKCP 137
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
+C SF+ + + H R H+GEKPY C +C K F+ +L+ H H+ +P+ C C
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCP--ECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Query: 70 PRSYRQLCTLNVHKKTN 86
+S+ + LNVH++T+
Sbjct: 168 GKSFSRRDALNVHQRTH 184
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
+C SF+ N + H R H+GEKPY C +C K F++ + L H H+ +P+ C C
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACP--ECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 70 PRSYRQLCTLNVHKKTNHRESKNKKP 95
+S+ + L+ H++T+ E K P
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKCP 165
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
+C SF+ + + H R H+GEKPY C +C K F++ L +H H+ +P+ C C
Sbjct: 26 ECGKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 70 PRSYRQLCTLNVHKKTN 86
+S+ Q L H++T+
Sbjct: 84 GKSFSQRANLRAHQRTH 100
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 27 IHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
+ GEKPY C +C K F+ L +H H+ +P+ C C +S+ L H++T+
Sbjct: 15 LEPGEKPYACP--ECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH 72
Query: 87 HRESKNKKP 95
E K P
Sbjct: 73 TGEKPYKCP 81
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
+C SF+ ++N + H R H+GEKPY C +C K F++ S L KH H+ +P+ C C
Sbjct: 9 ECGKSFSQSSNLQKHQRTHTGEKPYKCP--ECGKSFSQSSDLQKHQRTHTGEKPYKCPEC 66
Query: 70 PRSYRQLCTLNVHKKTN 86
+S+ + L+ H++T+
Sbjct: 67 GKSFSRSDHLSRHQRTH 83
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRES 90
EKPY C +C K F++ S+L KH H+ +P+ C C +S+ Q L H++T+ E
Sbjct: 2 EKPYKCP--ECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 91 KNKKP 95
K P
Sbjct: 60 PYKCP 64
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+P+ C F+ TN H+RIH+G+KP+ C++ C + F++ +SL H H+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHTGE 60
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRE 89
+PF CD C R + L T H K + R+
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 89
E+PY C V C +RF++ ++L H +H+ +PF C C R++ Q +LN H +T+ E
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+PF C + ++ + H R H+GEKPY C +DC++RF+ L +H H+ +
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTN 86
+PF C C R + + L H +T+
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
DC+ F+ + K H R H+G KP+ C+ CQ++F+ L HT H+ +PF C
Sbjct: 43 DCERRFSRSDQLKRHQRRHTGVKPFQCKT--CQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
C+ F+ + + K H R H+GEKP+ C+ CQK+F L +H +H
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD--RCPRSYRQLCTLNVHKK 84
S ++P++C C KR+ + S L H+ H+ +P+ CD C R + + L H++
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR 59
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCP 70
C F+ K HMR H+G KPY C+ C + SSL KH +HSD RPF C CP
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKCKT--CDYAAADSSSLNKHLRIHSDERPFKCQICP 71
Query: 71 RSYRQLCTLNVHKKTNHRES 90
+ R L VH +++ +S
Sbjct: 72 YASRNSSQLTVHLRSHTGDS 91
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 3 PFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIR 62
P + +C +F ++ K H +H+GEKP+ C C KRF+ +L H +H+ R
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91
Query: 63 PFIC--DRCPRSYRQLCTLNVHKKTNHRESKN 92
P++C D C + + Q L H T H ++KN
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILT-HAKAKN 122
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
KPF C F+ N + H+RIH+G++PYVC C K+F + ++L H L H+
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Query: 62 R 62
+
Sbjct: 121 K 121
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
C F + + H+ H G + +VC +C K F E S L +H LVH+ +PF C
Sbjct: 12 GCTKMFRDNSAMRKHLHTH-GPRVHVCA--ECGKAFVESSKLKRHQLVHTGEKPFQC 65
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCP 70
C ++ +++ K H+R H+GEKPY C C +F L +H H+ RPF C +C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 71 RSYRQLCTLNVHKK 84
R++ + L +H K
Sbjct: 74 RAFSRSDHLALHMK 87
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
+ C C K +T+ S L H H+ +P+ CD
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCD 40
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHT-LVHSDIRPFICD- 67
C+ S++ N K H+R H+GEKPY+C+ C K F+ S KH HS+ +P++C
Sbjct: 74 GCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL 133
Query: 68 -RCPRSYRQLCTLNVHKKTNH 87
C + Y +L H KT H
Sbjct: 134 PGCTKRYTDPSSLRKHVKTVH 154
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
HMR H+GEKP+ C C+K ++ +L H H+ +P++C+
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 9 WD-CKISFASATNYKNHM---RIHSGEKPYVCQVRDCQKRFTEYSSLYK---HTLVHSDI 61
WD C F S +H+ IH K +VC C + + + Y H H+
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 62 RPFIC--DRCPRSYRQLCTLNVHKKTN 86
+P C + C +SY +L L H +++
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSH 92
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCP 70
C ++ +++ K H+R H+GEKPY C C +F L +H H+ RPF C +C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 71 RSYRQLCTLNVHKK 84
R++ + L +H K
Sbjct: 73 RAFSRSDHLALHMK 86
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
+ C C K +T+ S L H H+ +P+ CD
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCD 39
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCP 70
C + +++ K H+R H+GEKPY C C RF L +H H+ +PF C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 71 RSYRQLCTLNVHKK 84
RS+ + L +H K
Sbjct: 83 RSFSRSDHLALHMK 96
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 9 WDCKI---SFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFI 65
+DCKI SF ++ H+ IHS +PY CQ C KRF + S + KHT +H+ +P
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 66 CDRCPRSYRQLCTLNVHKK 84
C C +++ Q L H +
Sbjct: 60 CQVCGKAFSQSSNLITHSR 78
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+P+ C F+ ++N H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60
Query: 62 RPFICDRCPRSY 73
+PF CD C R +
Sbjct: 61 KPFACDICGRKF 72
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
E+PY C V C +RF++ S+L +H +H+ +PF C C R++ + L H +T+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+P+ C F+ + + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60
Query: 62 RPFICDRCPRSY 73
+PF CD C R +
Sbjct: 61 KPFACDICGRKF 72
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
E+PY C V C +RF+ + L +H +H+ +PF C C R++ + L H +T+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+P+ C F+ + + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60
Query: 62 RPFICDRCPRSY 73
+PF CD C R +
Sbjct: 61 KPFACDICGRKF 72
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
E+PY C V C +RF++ SL +H +H+ +PF C C R++ + L H +T+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+P+ C F+ + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60
Query: 62 RPFICDRCPRSY 73
+PF CD C R +
Sbjct: 61 KPFACDICGRKF 72
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
E+PY C V C +RF+ + L +H +H+ +PF C C R++ + L H +T+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCP 70
C F + N H R H+ E+PY C + C K F L H +HS +PF C C
Sbjct: 23 CGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKPFKCQECG 80
Query: 71 RSYRQLCTLNVHK 83
+ + Q TL VHK
Sbjct: 81 KGFCQSRTLAVHK 93
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 89
+K ++C+ C + FT+ +L H H+D RP+ CD C +++R+ L H+ + +E
Sbjct: 15 KKEFICKF--CGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+P+ C F+ + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60
Query: 62 RPFICDRCPRSY 73
+PF CD C R +
Sbjct: 61 KPFACDICGRKF 72
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
E+PY C V C +RF+ L +H +H+ +PF C C R++ + L H +T+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+P+ C F+ + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 59
Query: 62 RPFICDRCPRSY 73
+PF CD C R +
Sbjct: 60 KPFACDICGRKF 71
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
E+PY C V C +RF+ L +H +H+ +PF C C R++ + L H +T+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 56
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+P+ C F+ + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60
Query: 62 RPFICDRCPRSY 73
+PF CD C R +
Sbjct: 61 KPFACDICGRKF 72
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
E+PY C V C +RF+ L +H +H+ +PF C C R++ + L H +T+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
DC ++ + H+ H+GEKP+ C+ C+K FT L +H+L H+ + F CD
Sbjct: 10 DCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 67
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKH 54
KPF C+ F S + H H+GEK + C C RFT +++ KH
Sbjct: 32 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 84
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC--DRCPRSYRQLCTLNVHKKTNHRE 89
K Y+C DC + + L H H+ +PF C + C + + L L H T+ E
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 7 FPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+P C SF + HM +H G +PY C V C K+F L H +H+ I+P+ C
Sbjct: 11 YPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 67 DRCPRSY 73
+ C + +
Sbjct: 69 NICAKRF 75
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKK 84
SG+K Y CQ C K FT S +H +H +RP+ C C + ++ L H K
Sbjct: 6 SGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 2 KPF-FYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
KPF FP C FA + N K H R H+GEKP+ C+ C +RF S KH VH+
Sbjct: 89 KPFPCPFP-GCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 14 SFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
SF + NH+R+H+GEKP+ C C K F +L H H+ +PF C+
Sbjct: 71 SFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 11 CKISFASATNYKNHMRIHSGEKP----YVCQVRDCQKRFTEYSSLYK---HTLVHSDIRP 63
C +F++ H+ + P +VC +C + + + YK H VH+ +P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 64 FIC--DRCPRSYRQLCTLNVHKKTNHRE 89
F C C + + + L +HK+T+ E
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGE 118
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
Length = 190
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
DC ++ + H+ H+GEKP+ C+ C+K FT L +H+L H+ + F CD
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD 76
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
KPF C+ F S + H H+GEK + C C RFT +++ KH +I
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
Query: 62 R--PFIC--DRCPRSYRQLCTLNVHK 83
+ ++C + C +++++ L VH+
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQ 126
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
+C +F K H H+ + PY C C KRF+ S L +H VH+
Sbjct: 111 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 10 DCKISFASATNYKNHM-RIHSGEK-PYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC- 66
C + F + N K H R H+ + YVC +C K F +++ L H H+ P+ C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 67 -DRCPRSYRQLCTLNVHKKTN 86
+ C + + L H+K +
Sbjct: 139 HEGCDKRFSLPSRLKRHEKVH 159
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC--DRCPRSYRQLCTLNVHKKTNHRE 89
K Y+C DC + + L H H+ +PF C + C + + L L H T+ E
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
+C SF+ +++ H R H+GEKPY C +C K F + S L H VH+ P
Sbjct: 23 ECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 40 DCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSN 97
+C K F+ S L KH H+ +P+ CD C +++ Q L H HR PS+
Sbjct: 23 ECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH----HRVHTGSGPSS 76
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
C+ SF N +H +H+GEKPY C + C +F ++L HT +HS +P
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP 73
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 89
+KPY C CQ F +L H VH+ +P+ C+ C + + L H + + E
Sbjct: 15 DKPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
C ++ +++ K H R H+GEKP+ C + C++RF L +H H
Sbjct: 24 GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD--RCPRSYRQLCTLNVHKKTN 86
+ ++C C K + + S L HT H+ +PF C C R + + L+ H++T+
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
+PY C V C +RF+ L +H +H+ +PF C C R++ + L H +T+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 1 MKPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
M+P+ C F+ + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 73
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 6 YFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
Y +C +F+ ++ H R+H+GEKPY C +C K F++ S L H +H+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHTS 67
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
EKPY C +C K F+ S L +H VH+ +P+ C C +++ Q L H++ +
Sbjct: 12 EKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 5 FYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 64
+Y CK S+ T+ + H IHS EK Y C R C+K F KH + H+ R +
Sbjct: 22 YYICIVCKRSYVCLTSLRRHFNIHSWEKKYPC--RYCEKVFPLAEYRTKHEIHHTGERRY 79
Query: 65 ICDRCPRSYRQLCTLNVHKKTNHRE 89
C C +S+ ++ H K+ H +
Sbjct: 80 QCLACGKSFINYQFMSSHIKSVHSQ 104
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH--SDIRPFICDR 68
C F + H HSGEKPY C V C RF + H H S +P+IC
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQS 70
Query: 69 CPRSYRQLCTLNVHKKTNH 87
C + + + LN H K H
Sbjct: 71 CGKGFSRPDHLNGHIKQVH 89
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 20/100 (20%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHR 88
SG C++ C K F + L +H L HS +P+ C C +++ ++ H ++ H
Sbjct: 3 SGSSGVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HD 59
Query: 89 ESKNK------------KPSNRNNIVKQECVQKINSNPTT 116
S K +P + N +KQ ++S P++
Sbjct: 60 GSVGKPYICQSCGKGFSRPDHLNGHIKQ-----VHSGPSS 94
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLV-HSD-IRPFICDRCPRSYRQLCTLNVHK 83
R HSGEKPY C + C RFT+ ++ H L H++ + F C C + L VH
Sbjct: 8 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Query: 84 KTNH 87
+ H
Sbjct: 66 RKQH 69
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 8 PWDCKI---SFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 64
P+ C+I +F+ + + H+R H+GEKP+ C + C ++F +H + I P
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHRDIQH-ILPI 59
Query: 65 ICDR 68
+ D+
Sbjct: 60 LEDK 63
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNH 87
KP+ C++ C + F+ L H H+ +PF CD C R + + H+ H
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 35.8 bits (81), Expect = 0.010, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
SGEKPYVCQ +C K FT+ S L H VH+
Sbjct: 6 SGEKPYVCQ--ECGKAFTQSSCLSIHRRVHT 34
Score = 28.1 bits (61), Expect = 2.0, Method: Composition-based stats.
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRES 90
+P++C C +++ Q L++H++ + ES
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGES 37
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.010, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
SGEKPYVC DC K FT S L H +H+ +
Sbjct: 6 SGEKPYVCS--DCGKAFTFKSQLIVHQGIHTGV 36
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
E+PY+C V C K FT+ S+L KH +H+ +P
Sbjct: 10 ERPYICTV--CGKAFTDRSNLIKHQKIHTGEKP 40
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 11 CKISFASATNYKNHMRIHSGEKP 33
C +F +N H +IH+GEKP
Sbjct: 18 CGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.027, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
SGEKPY C +C K FT S L H VH+ ++P
Sbjct: 6 SGEKPYSCN--ECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKP+ C+ +C KRFT+ S L+ H VH+ +P
Sbjct: 10 EKPFKCE--ECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C F + +H R+H+GEKP
Sbjct: 17 ECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKP+ C+ +C KRFT+ S L+ H VH+ +P
Sbjct: 10 EKPFQCE--ECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C F ++ +H R+H+GEKP
Sbjct: 17 ECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 33.5 bits (75), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
Y+C+ +C R + S L KH H+D+RP+ C C S++ L H K+
Sbjct: 2 YICE--ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTL-VHSD 60
C +FA + K H R H+ EKPY C + C + FT L +H +HS
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSG 56
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNH 87
+VC+V C + F L +H H++ +P+ C C R++ + L H + H
Sbjct: 3 FVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 21/95 (22%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD----IRPFICDRCPRSYRQLCTLNV 81
R H+GEKPY C C K F + L H + D F+C +C +++ + T+
Sbjct: 8 RTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65
Query: 82 HKKTNHRESKNKKPSNRNNIVKQECVQKINSNPTT 116
H +N + V+ NS P++
Sbjct: 66 HA---------------DNCAGPDGVEGENSGPSS 85
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
KPY+C +C K F+ YSSL H ++H+ +P
Sbjct: 11 KPYMC--NECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
E+P+ C C K + + S L +H H RP C C + +R +N H K +
Sbjct: 2 ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
C ++ A+ H R H G +P C +C K F + S + +H VH +
Sbjct: 10 CGKTYRDASGLSRHRRAHLGYRPRSCP--ECGKCFRDQSEVNRHLKVHQN 57
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
SG+KP VC +C K F + S L KH +HS +P
Sbjct: 6 SGKKPLVCN--ECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C +F ++ H RIHSGEKP
Sbjct: 15 ECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 59 SDIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSN 97
S +P +C+ C +++RQ L+ H++ H K PS+
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRI-HSGEKPSGPSS 43
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY+C +C K FT S+L KH +H+ +P
Sbjct: 10 EKPYICA--ECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K FT+ S+L+ H +H+ +P
Sbjct: 10 EKPYRCA--ECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C +F +N H +IH+GEKP
Sbjct: 17 ECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHT---LVHSDIRPFICD 67
C F S K H R H+GEKP+ C C K + +L +H ++ + F C
Sbjct: 13 CHKKFLSKYYLKVHNRKHTGEKPFECP--KCGKCYFRKENLLEHEARNCMNRSEQVFTCS 70
Query: 68 RCPRSYRQLCTLNVHKKTNHRESKNKKPSNRNNIVKQECVQ----KINSNPTT 116
C ++R+ L +H ++ E K S ++++ +Q K++S P++
Sbjct: 71 VCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 31.6 bits (70), Expect = 0.18, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
SGEKPY C ++C K F++ SL H +H+ P
Sbjct: 6 SGEKPYQC--KECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.19, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C V C+K F+ ++SL +H VHS +P
Sbjct: 10 EKPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40
Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 11 CKISFASATNYKNHMRIHSGEKP 33
C+ +F+ + H R+HSGEKP
Sbjct: 18 CRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K FT+ S L H +H+ ++P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 10 DCKISFASATNYKNHMRIHSGEK 32
+C F ++ N K H+RIHSGEK
Sbjct: 7 ECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.20, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
DC F A+N+ H RIH+GEKP
Sbjct: 17 DCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 39 RDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKK 84
+D ++RF+ S+ ++ L+H D + C R YR+ C ++H+K
Sbjct: 62 KDSKERFSRKMSVQEYELIHKDKED---ENCLRKYRRQCMQDMHQK 104
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
+C +F K H H+ + PY C C KRF+ S L +H VH+
Sbjct: 8 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC--DRCPRSYRQLCTLNVHKKTN 86
YVC +C K F +++ L H H+ P+ C + C + + L H+K +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K FT+ S L +H VH+ +P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+C +F K H H+ + PY C C KRF+ S L +H VH+
Sbjct: 8 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC--DRCPRSYRQLCTLNVHKKTN 86
YVC +C K F +++ L H H+ P+ C + C + + L H+K +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C + C K FT+ S L+ H +H+ +P
Sbjct: 10 EKPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 8 PWDCKI---SFASATNYKNHMRIHSGEKP 33
P++C I SF + H +IH+GEKP
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.32, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSN 97
+PF CD C +S+RQ LN H+ H K PS+
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMI-HTGEKPSGPSS 45
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
+ EKP+ C C K F + S+L H ++H+ +P
Sbjct: 8 TAEKPFRCDT--CDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.33, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY CQV C K F S L +H VHS RP
Sbjct: 10 EKPYKCQV--CGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C ++C K F S L KH VHS +P
Sbjct: 10 EKPYNC--KECGKSFRWASCLLKHQRVHSGEKP 40
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C SF A+ H R+HSGEKP
Sbjct: 17 ECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.4 bits (67), Expect = 0.43, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C+ C RF + + L H L+H+ P
Sbjct: 9 EKPYKCET--CGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K F++ S L +H +H+ +P
Sbjct: 10 EKPYKCN--ECGKAFSQTSKLARHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C +F+ + H RIH+GEKP
Sbjct: 17 ECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.45, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C +FA N H RIH+GEKP
Sbjct: 17 ECGKAFAQKANLTQHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K F + ++L +H +H+ +P
Sbjct: 10 EKPYRCG--ECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+CK +F +++ H RIH+GEKP
Sbjct: 17 ECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 40 DCQKRFTEYSSLYKHTLVHSDIRP 63
+C+K FT+ SSL H +H+ +P
Sbjct: 17 ECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 30.0 bits (66), Expect = 0.50, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
SGEKPYVC +C K F S H +H+
Sbjct: 6 SGEKPYVCT--ECGKAFIRKSHFITHERIHT 34
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K FT+ S L +H +H+ +P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K FT+ S L +H +H+ +P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY+C +C K F + S L +H +H+ +P
Sbjct: 10 EKPYICN--ECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C SF ++ H RIH+GEKP
Sbjct: 17 ECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSN 97
+P+IC+ C +S+ Q LN H++ H K PS+
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRI-HTGEKPSGPSS 45
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 30.0 bits (66), Expect = 0.61, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKP+ C C RF+ L +H HS ++P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K F +S+L H ++H+ +P
Sbjct: 10 EKPYKCN--ECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C +F + +N H IH+GEKP
Sbjct: 17 ECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 29.6 bits (65), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 20 NYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
++K + IH +K + C C K F L +H +HSD R +IC+
Sbjct: 27 HHKKYQHIH--QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 72
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K F S L +H L+H+ +P
Sbjct: 10 EKPYKCH--ECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKP+ C + C K F S L +H++VH+ +P
Sbjct: 10 EKPFKCDI--CGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 0.83, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
SG+KPYVC +C K F S L H +H+
Sbjct: 6 SGQKPYVCN--ECGKAFGLKSQLIIHERIHT 34
>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 246
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 39 RDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKK 84
+D ++R + S+ ++ L+H D + C R YR+ C ++H+K
Sbjct: 62 KDSKERMSRKMSIQEYELIHQDKED---EGCLRKYRRQCMQDMHQK 104
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTL 56
H+R H+GEKPY C+ F EY++ K +L
Sbjct: 23 HLRTHTGEKPYKCE-------FCEYAAAQKTSL 48
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C C K F+ SSL H +H+ +P
Sbjct: 10 EKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
KPY C +C K F++ S L +H VH+ +P
Sbjct: 11 KPYQCN--ECGKAFSQTSKLARHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C +F+ + H R+H+GEKP
Sbjct: 17 ECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K F SSL H HS +P
Sbjct: 10 EKPYKCN--ECGKAFRARSSLAIHQATHSGEKP 40
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSN 97
+P+ C+ C +++R +L +H+ T H K PS+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQAT-HSGEKPSGPSS 45
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 1.3, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
SGEKPY C DC K F S L H H+
Sbjct: 6 SGEKPYECT--DCGKAFGLKSQLIIHQRTHT 34
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
SGEKP+ C C+K F+ S L H H++ +P
Sbjct: 6 SGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C DC K F + S L+ H +H+ P
Sbjct: 10 EKPYECS--DCGKSFIKKSQLHVHQRIHTGENP 40
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
DC SF + H RIH+GE P
Sbjct: 17 DCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K FT+ S L H +H+ +P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C F ++ NH RIH+GEKP
Sbjct: 17 ECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C+ +C K F LY H +VH+ +P
Sbjct: 10 EKPYKCE--ECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K F ++ L +H +H+ RP
Sbjct: 10 EKPYKCS--ECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.5, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C SF+ ++ H RIH+GEKP
Sbjct: 17 ECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 1.7, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
DC +F+ H RIH+GEKP
Sbjct: 17 DCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKP+ C DC K F+++ L +H +H+ +P
Sbjct: 10 EKPFDCI--DCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
+KPY C +C K FT+ S L +H +H+ +P
Sbjct: 10 KKPYKCN--ECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 61 IRPFICDRCPRSYRQLCTLNVHKKTNHRES 90
++P++C+ C +++R L +H +T+ ES
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGES 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.8, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C ++C K F++ + L +H VH+ +P
Sbjct: 10 EKPYEC--KECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 27.7 bits (60), Expect = 2.4, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 8 PWDCK---ISFASATNYKNHMRIHSGEKP 33
P++CK +F+ T+ H R+H+GEKP
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C SF + + H RIH+GEKP
Sbjct: 17 ECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPYVC C K F + L +H +H+ +P
Sbjct: 10 EKPYVCDY--CGKAFGLSAELVRHQRIHTGEKP 40
Score = 26.2 bits (56), Expect = 7.0, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 11 CKISFASATNYKNHMRIHSGEKP 33
C +F + H RIH+GEKP
Sbjct: 18 CGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C V C K F SSL H +H+ +P
Sbjct: 10 EKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSN 97
+P+ CD C +S+R +L VH++ H K PS+
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRI-HTGEKPSGPSS 45
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 8 PWDCKI---SFASATNYKNHMRIHSGEKP 33
P+ C + SF ++ H RIH+GEKP
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C+ +C K F S L +H +H+ +P
Sbjct: 10 EKPYNCE--ECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C +F + + H RIH+GEKP
Sbjct: 17 ECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C SF+ A H R+HSGEKP
Sbjct: 17 ECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.7 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C +F+S + HMR HSGEKP
Sbjct: 17 ECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
Length = 246
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 39 RDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKK 84
+D ++R + + ++ L+H D + C R YR+ C ++H+K
Sbjct: 62 KDSKERMSRKMEIQEYELIHQDKED---EGCLRKYRRQCMQDMHQK 104
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C+V C K FT+ + L +H H+ +P
Sbjct: 10 EKPYECKV--CSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
E P++C +C K FT ++L H +H+ RP
Sbjct: 10 ENPFICS--ECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 27.7 bits (60), Expect = 2.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
SG++P+VC++ C FT ++ +H VH+D
Sbjct: 3 SGKRPFVCRI--CLSAFTTKANCARHLKVHTD 32
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 2.9, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C V C K F+ SL H +HS +P
Sbjct: 10 EKPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C +F + +H+RIH+GEKP
Sbjct: 17 ECGKAFRQNIHLASHLRIHTGEKP 40
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSN 97
+PF C C +++RQ N+H ++ R +KPS
Sbjct: 11 KPFKCKECGKAFRQ----NIHLASHLRIHTGEKPSG 42
>pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex
Length = 217
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 39 RDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKK 84
+D ++R + S+ ++ L+H D + C R YR+ C + H+K
Sbjct: 49 KDSKERXSRKXSIQEYELIHQDKED---EGCLRKYRRQCXQDXHQK 91
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
SGEKPY C +C++ F++ + L +H +H+
Sbjct: 6 SGEKPYSCA--ECKETFSDNNRLVQHQKMHT 34
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
KPYVC CQ++F + +L +H +H+
Sbjct: 2 KPYVCI--HCQRQFADPGALQRHVRIHT 27
Score = 26.9 bits (58), Expect = 4.3, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1 MKPFFYFPWDCKISFASATNYKNHMRIHSGEK 32
MKP Y C+ FA + H+RIH+GEK
Sbjct: 1 MKP--YVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 26.9 bits (58), Expect = 4.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C C K F++ SL H VH+ P
Sbjct: 9 EKPYRCD--QCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C +F S + HMR H+GEKP
Sbjct: 15 ECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 4.8, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C +FA + H RIH+GEKP
Sbjct: 17 ECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
SG++ Y CQ +C K F + SL H +H+ P
Sbjct: 6 SGQRVYECQ--ECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 11 CKISFASATNYKNHMRIHSGEKP 33
C F+ +++ + H R+H+GEKP
Sbjct: 18 CGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C F ++ H RIH+GEKP
Sbjct: 17 ECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIR 62
EKPY C DC K FT S L+ H H+ R
Sbjct: 10 EKPYKCS--DCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C+ +F + +N H R H+GEKP
Sbjct: 17 ECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSN 97
+P+ C+ C +++ Q L+ H++T H K PS+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRT-HTGEKPSGPSS 45
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 26.2 bits (56), Expect = 7.6, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C++ C RF +L H +H+ P
Sbjct: 9 EKPYPCEI--CGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKP+ C+ +C K F S Y H HS +P
Sbjct: 10 EKPFKCE--ECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 8.6, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
+C + F+ A++ + H +H GEKP
Sbjct: 17 ECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 25.8 bits (55), Expect = 9.8, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
SG K + + +C K F+ + L KH L+H+ P
Sbjct: 6 SGTKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
EKPY C +C K F S L +H +H+ +P
Sbjct: 10 EKPYKCN--ECGKVFRHNSYLSRHQRIHTGEKP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,561,305
Number of Sequences: 62578
Number of extensions: 165678
Number of successful extensions: 838
Number of sequences better than 100.0: 148
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 335
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)