RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6598
(154 letters)
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 81.9 bits (203), Expect = 8e-21
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKH-TLVHSD 60
KP C+ S++ N K H+R H+GEKPY+C+ C K F+ S KH HS+
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 61 IRPFICDR--CPRSYRQLCTLNVHKKT 85
+P++C C + Y +L H KT
Sbjct: 126 EKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 68.8 bits (169), Expect = 1e-15
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 14 SFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC--DRCPR 71
F + HMR H+GEKP+ C C+K ++ +L H H+ +P++C + C +
Sbjct: 48 PFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSK 107
Query: 72 SYRQLCTLNVHKKTNH 87
++ H+ H
Sbjct: 108 AFSNASDRAKHQNRTH 123
Score = 64.2 bits (157), Expect = 6e-14
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 10 DCKISFASATNYKNHM-RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
C +F++A++ H R HS EKPYVC++ C KR+T+ SSL KH
Sbjct: 104 GCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 61.8 bits (151), Expect = 4e-13
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 10 DCKISFASATNYKNHM---RIHSGEKPYVCQVRDCQ---KRFTEYSSLYKHTLVHSDIRP 63
C F S +H+ IH K +VC C + F L H H+ +P
Sbjct: 8 GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP 67
Query: 64 FICDR--CPRSYRQLCTLNVHKKT 85
C C +SY +L L H ++
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRS 91
Score = 41.8 bits (99), Expect = 1e-05
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTL---VHSDIRPFIC-----DRCPRSYRQLCTLNVH 82
E C + F L H +H + + F+C R R ++ L VH
Sbjct: 1 ETDCRWD--GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 83 KKT 85
+
Sbjct: 59 MRR 61
Score = 26.0 bits (58), Expect = 4.7
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNH 87
D C + + L H + H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH 27
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 79.5 bits (197), Expect = 9e-21
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 20 NYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS--DIRPFICDRCPRSYRQLC 77
+ + R HSGEKPY C + C RFT+ ++ H L ++ F C C +
Sbjct: 2 SSGSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59
Query: 78 TLNVHKKTNH 87
L VH + H
Sbjct: 60 DLGVHLRKQH 69
Score = 47.9 bits (115), Expect = 2e-08
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 4/46 (8%)
Query: 11 CKISFASATNYKNHMRIHSGE--KPYVCQVRDCQKRFTEYSSLYKH 54
C F + K H+ E + C C S L H
Sbjct: 21 CHARFTQSGTMKMHILQKHTENVAKFHCP--HCDTVIARKSDLGVH 64
Score = 34.4 bits (80), Expect = 0.002
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 11 CKISFASATNYKNHMR-IHSGEKPY 34
C A ++ H+R HS P
Sbjct: 51 CDTVIARKSDLGVHLRKQHSYSGPS 75
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 79.1 bits (196), Expect = 4e-20
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+PF C + ++ + H R H+GEKPY C +DC++RF+ L +H H+ +
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 62 RPFICDRCPRSYRQLCTLNVHKKT 85
+PF C C R + + L H +T
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 71.8 bits (177), Expect = 3e-17
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
KP+ DC+ F+ + K H R H+G KP+ C+ CQ++F+ L HT H+
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK--TCQRKFSRSDHLKTHTRTHTGE 92
Query: 62 RPFICDR--CPRSYRQLCTLNVHKKT 85
+PF C C + + + L H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 59.1 bits (144), Expect = 2e-12
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
C+ F+ + + K H R H+GEKP+ C+ CQK+F L +H +H
Sbjct: 71 TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 52.9 bits (128), Expect = 5e-10
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR--CPRSYRQLCTLNVHKKT 85
S ++P++C C KR+ + S L H+ H+ +P+ CD C R + + L H++
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 78.1 bits (193), Expect = 6e-20
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCP 70
C + +++ K H+R H+GEKPY C C RF L +H H+ +PF C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 71 RSYRQLCTLNVHKKT 85
RS+ + L +H K
Sbjct: 83 RSFSRSDHLALHMKR 97
Score = 53.0 bits (128), Expect = 3e-10
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
KP+ C FA + H R H+G KP+ C V C + F+ L H H +
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV--CNRSFSRSDHLALHMKRHQN 100
Score = 48.0 bits (115), Expect = 3e-08
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 14 SFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC--DRCPR 71
S S+ RIH + P C K +T+ S L H H+ +P+ C + C
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG------CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55
Query: 72 SYRQLCTLNVHKKT 85
+ + L H +
Sbjct: 56 RFARSDELTRHYRK 69
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 75.6 bits (187), Expect = 5e-19
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
C ++ +++ K H+R H+GEKPY C C +F L +H H+ RPF C +C
Sbjct: 12 GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 70 PRSYRQLCTLNVHKKT 85
R++ + L +H K
Sbjct: 72 DRAFSRSDHLALHMKR 87
Score = 51.8 bits (125), Expect = 8e-10
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
KP+ C FA + H R H+G +P+ CQ C + F+ L H H
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK--CDRAFSRSDHLALHMKRH 88
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 28 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR--CPRSYRQLCTLNVHKKT 85
+ C K +T+ S L H H+ +P+ CD C + + L H +
Sbjct: 2 RTATHTCDYA--GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 74.4 bits (184), Expect = 1e-18
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+P+ C F+ + + H+RIH+G+KP+ C R C + F+ L H H+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Query: 62 RPFICDRCPRSYRQLCTLNVHKKT 85
+PF CD C R + + H K
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 55.9 bits (136), Expect = 2e-11
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
E+PY C V C +RF++ SL +H +H+ +PF C C R++ + L H +T
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 53.2 bits (129), Expect = 2e-10
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 8 PWDCKI---SFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
P+ C+I +F+ + + H+R H+GEKP+ C C ++F +HT +H
Sbjct: 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERKRHTKIH 85
Score = 30.5 bits (70), Expect = 0.069
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 10 DCKISFASATNYKNHMRIHSGEK 32
C FA + K H +IH +K
Sbjct: 67 ICGRKFARSDERKRHTKIHLRQK 89
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 73.0 bits (180), Expect = 4e-18
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRI-HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
C F++ +H + H +K + C C K F L +H +HSD
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 61 IRPFICDRCPRSY 73
R +IC+ S
Sbjct: 66 TRDYICEFSGPSS 78
Score = 52.9 bits (128), Expect = 2e-10
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 28 HSGEKPYVCQVRDCQKRFTEYSSLYKHT-LVHSDIRPFICD--RCPRSYRQLCTLNVHKK 84
SG C C + F+ L H H + F C C +S+ L H K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 85 T 85
Sbjct: 62 L 62
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 71.9 bits (177), Expect = 1e-17
Identities = 21/78 (26%), Positives = 29/78 (37%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
+C +F K H H+ + PY C C KRF+ S L +H VH+ D C
Sbjct: 8 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 67
Query: 70 PRSYRQLCTLNVHKKTNH 87
+ H H
Sbjct: 68 SFVGKTWTLYLKHVAECH 85
Score = 38.8 bits (91), Expect = 6e-05
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD--RCPRSYRQLCTLNVHKKTNHRESK 91
YVC +C K F +++ L H H+ P+ C C + + L H+K H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYP 60
Query: 92 NKKP 95
KK
Sbjct: 61 CKKD 64
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 72.9 bits (180), Expect = 1e-17
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR- 68
+C +F ++ K H +H+GEKP+ C C KRF+ +L H +H+ RP++C
Sbjct: 39 ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFD 98
Query: 69 -CPRSYRQLCTLNVHKKT 85
C + + Q L H T
Sbjct: 99 GCNKKFAQSTNLKSHILT 116
Score = 65.6 bits (161), Expect = 9e-15
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
+ C F + + H+ H G + +VC +C K F E S L +H LVH+
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCA--ECGKAFVESSKLKRHQLVHTGE 60
Query: 62 RPFICDR--CPRSYRQLCTLNVHKKT 85
+PF C C + + L H +
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 63.7 bits (156), Expect = 4e-14
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
KPF C F+ N + H+RIH+G++PYVC C K+F + ++L H L H+
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
Query: 62 RPF 64
+
Sbjct: 121 KNN 123
Score = 54.1 bits (131), Expect = 2e-10
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
+ C + C K F + S++ KH H R +C C +++ + L H+
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLV 56
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 70.9 bits (175), Expect = 3e-17
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCP 70
C F+ K HMR H+G KPY C+ C + SSL KH +HSD RPF C CP
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKCK--TCDYAAADSSSLNKHLRIHSDERPFKCQICP 71
Query: 71 RSYRQLCTLNVHKKT 85
+ R L VH ++
Sbjct: 72 YASRNSSQLTVHLRS 86
Score = 55.1 bits (134), Expect = 4e-11
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
C + A +++ H+RIHS E+P+ CQ C S L H H+
Sbjct: 41 TCDYAAADSSSLNKHLRIHSDERPFKCQ--ICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 50.9 bits (123), Expect = 2e-09
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 28 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
P+ C+ C K F+ L H H+ ++P+ C C + +LN H +
Sbjct: 3 SGSSGPHKCE--VCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 72.7 bits (179), Expect = 3e-17
Identities = 24/66 (36%), Positives = 31/66 (46%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
KPF C FA + N K H R H+GEKP+ C+ C +RF S KH VH+
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Query: 62 RPFICD 67
+
Sbjct: 149 KSGPSS 154
Score = 70.0 bits (172), Expect = 3e-16
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR-- 68
SF + NH+R+H+GEKP+ C C K F +L H H+ +PF C+
Sbjct: 68 EGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Query: 69 CPRSYRQLCTLNVHKKT 85
C R + H
Sbjct: 128 CDRRFANSSDRKKHMHV 144
Score = 58.5 bits (142), Expect = 7e-12
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPY----VCQVRDCQ---KRFTEYSSLYKHTLVHSDIR 62
C +F++ H+ + P VC +C K F L H VH+ +
Sbjct: 30 SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
Query: 63 PFICDR--CPRSYRQLCTLNVHKKT 85
PF C C + + + L +HK+T
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRT 114
Score = 51.9 bits (125), Expect = 2e-09
Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 11/85 (12%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF----- 64
S + I + + C + F+ L H + P
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 65 ----ICDRCPRSYRQLCTLNVHKKT 85
C R +S++ L H +
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIRV 84
Score = 33.8 bits (78), Expect = 0.010
Identities = 8/69 (11%), Positives = 15/69 (21%), Gaps = 3/69 (4%)
Query: 40 DCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSNRN 99
+ C R++ + L H H N +
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG---GPEQNNH 58
Query: 100 NIVKQECVQ 108
+EC +
Sbjct: 59 VCYWEECPR 67
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 69.1 bits (170), Expect = 2e-16
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 8 PWDCKI---SFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS--DIR 62
C+I F + H HSGEKPY C C RF + H H +
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCP--VCGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 63 PFICDRCPRSYRQLCTLNVHKKTNH 87
P+IC C + + + LN H K H
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 55.6 bits (135), Expect = 3e-11
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 28 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
SG C+ C K F + L +H L HS +P+ C C +++ ++ H ++
Sbjct: 2 SSGSSGVACE--ICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 70.3 bits (173), Expect = 4e-16
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
K + DC ++ + H+ H+GEKP+ C+ C+K FT L +H+L H+
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 62 RPFICD--RCPRSYRQLCTLNVHKKTNHRE 89
+ F CD C + + H H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
Score = 68.8 bits (169), Expect = 2e-15
Identities = 21/80 (26%), Positives = 31/80 (38%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
+C +F K H H+ + PY C C KRF+ S L +H VH+ D C
Sbjct: 111 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 170
Query: 70 PRSYRQLCTLNVHKKTNHRE 89
+ H H++
Sbjct: 171 SFVGKTWTLYLKHVAECHQD 190
Score = 64.9 bits (159), Expect = 5e-14
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD--RCPRSYRQLCTLN 80
+ K Y+C DC + + L H H+ +PF C C + + L L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 81 VHKKT 85
H T
Sbjct: 62 RHSLT 66
Score = 63.8 bits (156), Expect = 2e-13
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 10 DCKISFASATNYKNHMRIHSGEK--PYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC- 66
C + F + N K H K YVC +C K F +++ L H H+ P+ C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 67 -DRCPRSYRQLCTLNVHKKTNHRESKNKKP 95
+ C + + L H+K H KK
Sbjct: 139 HEGCDKRFSLPSRLKRHEKV-HAGYPCKKD 167
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 67.1 bits (165), Expect = 7e-16
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 1 MKPFFYFPWDCKI---SFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLV 57
MKPF C+I +F+ + + H+R H+GEKP+ C C ++F +H +
Sbjct: 1 MKPF-----QCRICMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERKRHRDI 53
Query: 58 HSDIRPFICDRCPRSYRQLCTLNVHKK 84
I P + D+ + L
Sbjct: 54 QH-ILPILEDKVEELLSKNYHLENEVA 79
Score = 46.7 bits (112), Expect = 7e-08
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 89
KP+ C R C + F+ L H H+ +PF CD C R + + H+
Sbjct: 2 KPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-QHI 56
Score = 28.2 bits (64), Expect = 0.36
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 61 IRPFICDRCPRSYRQLCTLNVHKKT 85
++PF C C R++ + L H +T
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRT 25
Score = 25.5 bits (57), Expect = 3.3
Identities = 3/14 (21%), Positives = 6/14 (42%)
Query: 19 TNYKNHMRIHSGEK 32
N ++ GE+
Sbjct: 75 ENEVARLKKLVGER 88
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 65.5 bits (160), Expect = 3e-15
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 28 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI---RPFICDRCPRSYRQLCTLNVHKK 84
SG C++ C + +SL H H++ F C+ C + + + ++ H+
Sbjct: 2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Query: 85 TNHRESK 91
+H
Sbjct: 60 KSHPALL 66
Score = 53.9 bits (130), Expect = 9e-11
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 8 PWDCKI---SFASATNYKNHMRIHS---GEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
C+I + + H R H+ + C+ C KRF + S+ H
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPA 64
Query: 62 RPFICDRCP 70
Sbjct: 65 LLLAPQESS 73
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 65.1 bits (160), Expect = 5e-15
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
C SF ++ H+ IHS +PY CQ C KRF + S + KHT +H+ +P C C
Sbjct: 6 ICGKSFKRSSTLSTHLLIHSDTRPYPCQ--YCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 70 PRSYRQLCTLNVHKKT 85
+++ Q L H +
Sbjct: 64 GKAFSQSSNLITHSRK 79
Score = 48.2 bits (116), Expect = 2e-08
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
C F ++ K H IH+GEKP+ CQ C K F++ S+L H+ H
Sbjct: 34 YCGKRFHQKSDMKKHTFIHTGEKPHKCQ--VCGKAFSQSSNLITHSRKH 80
Score = 38.6 bits (91), Expect = 5e-05
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
+ C+ C K F S+L H L+HSD RP+ C C + + Q + H
Sbjct: 2 FDCK--ICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI 51
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 63.7 bits (156), Expect = 1e-14
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKH--TLVHSDIRPFICDRCPRSYRQLCTLNVHK 83
GE Y C+V C + +T S+ +H T +++ + C C + + + + H
Sbjct: 3 FTKEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 84 KTNHR 88
K H+
Sbjct: 61 KIIHK 65
Score = 44.9 bits (107), Expect = 2e-07
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 10 DCKISFASATNYKNHMRI--HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
C + +N+ H K Y C C K FT ++ H + I
Sbjct: 15 VCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHKI 66
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 63.9 bits (156), Expect = 1e-14
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 13 ISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRS 72
+ N N++ +PY C V C +RF+ L +H +H+ +PF C C R+
Sbjct: 1 MEPHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
Query: 73 YRQLCTLNVHKKT 85
+ + L H +T
Sbjct: 59 FSRSDHLTTHIRT 71
Score = 49.6 bits (119), Expect = 3e-09
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+P+ C F+ + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 73
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 63.2 bits (155), Expect = 4e-14
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
C F + N H R H+ E+PY C C K F L H +HS +PF C C
Sbjct: 22 FCGRHFTKSYNLLIHERTHTDERPYTCD--ICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 70 PRSYRQLCTLNVHKKT 85
+ + Q TL VHK
Sbjct: 80 GKGFCQSRTLAVHKTL 95
Score = 62.5 bits (153), Expect = 7e-14
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVH 82
+K ++C+ C + FT+ +L H H+D RP+ CD C +++R+ L H
Sbjct: 7 GGRLPSKTKKEFICK--FCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 83 KKT 85
+
Sbjct: 65 RYI 67
Score = 52.1 bits (126), Expect = 8e-10
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 8 PWDCKI---SFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 64
P+ C I +F + ++H IHS EKP+ CQ +C K F + +L H +H
Sbjct: 45 PYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ--ECGKGFCQSRTLAVHKTLHMQTSSP 102
Query: 65 IC 66
Sbjct: 103 TA 104
Score = 30.5 bits (70), Expect = 0.067
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 49 SSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
S L + FIC C R + + L +H++T
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT 39
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 63.7 bits (156), Expect = 5e-14
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKH---TLVHSDIRPFIC 66
C F S K H R H+GEKP+ C C K + +L +H ++ + F C
Sbjct: 12 TCHKKFLSKYYLKVHNRKHTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 67 DRCPRSYRQLCTLNVHKKT 85
C ++R+ L +H +
Sbjct: 70 SVCQETFRRRMELRLHMVS 88
Score = 59.1 bits (144), Expect = 2e-12
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 10 DCKISFASATNYKNHMR---IHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
C + N H ++ E+ + C CQ+ F L H + H+ P+ C
Sbjct: 40 KCGKCYFRKENLLEHEARNCMNRSEQVFTCS--VCQETFRRRMELRLHMVSHTGEMPYKC 97
Query: 67 DRCPRSYRQLCTLNVHKKTNH 87
C + + Q L H H
Sbjct: 98 SSCSQQFMQKKDLQSHMIKLH 118
Score = 51.0 bits (123), Expect = 3e-09
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 28 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 86
SG C C K+F L H H+ +PF C +C + Y + L H+ N
Sbjct: 2 SSGSSGVECP--TCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARN 58
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 62.1 bits (152), Expect = 6e-14
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVH 82
+H + +KPY C CQ F +L H VH+ +P+ C+ C + + L H
Sbjct: 7 HHSHMTHSDKPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 83 KKT 85
+
Sbjct: 65 TRI 67
Score = 49.8 bits (120), Expect = 3e-09
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
C+ SF N +H +H+GEKPY C C +F ++L HT +H
Sbjct: 22 RCQASFRYKGNLASHKTVHTGEKPYRCN--ICGAQFNRPANLKTHTRIH 68
Score = 35.1 bits (82), Expect = 8e-04
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPY 34
C F N K H RIHSGEKPY
Sbjct: 50 ICGAQFNRPANLKTHTRIHSGEKPY 74
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 61.2 bits (149), Expect = 6e-14
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
+ +GEKP+ C C RF+ L +H HS ++P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 36.9 bits (86), Expect = 1e-04
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQ 37
C F+ + H R HSG KP
Sbjct: 19 GCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 61.4 bits (150), Expect = 1e-13
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH----SDIRPFICDRCPRSYRQLCTL 79
R H+GEKPY C C K F + L H + F+C +C +++ + T+
Sbjct: 6 SGRTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 80 NVHKKT 85
H
Sbjct: 64 ARHADN 69
Score = 49.8 bits (120), Expect = 4e-09
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 11 CKISFASATNYKNHMRIHSGE----KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
C +F H + + +VC C K FT +++ +H +
Sbjct: 21 CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS--KCGKTFTRRNTMARHADNCAGPDGVEG 78
Query: 67 DRC 69
+
Sbjct: 79 ENS 81
Score = 38.7 bits (91), Expect = 6e-05
Identities = 4/35 (11%), Positives = 8/35 (22%), Gaps = 2/35 (5%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRF 45
C +F H +G + +
Sbjct: 53 CGKTFTRRNTMARHADNCAGPDGVEGE--NSGPSS 85
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 63.6 bits (156), Expect = 1e-13
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 13 ISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRS 72
IS +++ + GEKPY C +C K F+ L +H H+ +P+ C C +S
Sbjct: 1 ISEFGSSSSVAQAALEPGEKPYAC--PECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKS 58
Query: 73 YRQLCTLNVHKKT 85
+ L H++T
Sbjct: 59 FSDKKDLTRHQRT 71
Score = 63.6 bits (156), Expect = 2e-13
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
+C SF+ N + H R H+GEKPY C +C K F++ + L H H+ +P+ C C
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYAC--PECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 70 PRSYRQLCTLNVHKKT 85
+S+ + L+ H++T
Sbjct: 140 GKSFSREDNLHTHQRT 155
Score = 63.2 bits (155), Expect = 2e-13
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
+C SF+ + + H R H+GEKPY C +C K F+ +L+ H H+ +P+ C C
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKC--PECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Query: 70 PRSYRQLCTLNVHKKT 85
+S+ + LNVH++T
Sbjct: 168 GKSFSRRDALNVHQRT 183
Score = 62.5 bits (153), Expect = 4e-13
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
+C SF+ + H R H+GEKPY C +C K F++ ++L H H+ +P+ C C
Sbjct: 54 ECGKSFSDKKDLTRHQRTHTGEKPYKC--PECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Query: 70 PRSYRQLCTLNVHKKT 85
+S+ QL L H++T
Sbjct: 112 GKSFSQLAHLRAHQRT 127
Score = 62.5 bits (153), Expect = 5e-13
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
+C SF+ + + H R H+GEKPY C +C K F++ L +H H+ +P+ C C
Sbjct: 26 ECGKSFSRSDHLAEHQRTHTGEKPYKC--PECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 70 PRSYRQLCTLNVHKKT 85
+S+ Q L H++T
Sbjct: 84 GKSFSQRANLRAHQRT 99
Score = 48.6 bits (117), Expect = 6e-08
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
+C SF+ N H R H+GEKPY C +C K F+ +L H H
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKC--PECGKSFSRRDALNVHQRTH 184
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 59.8 bits (146), Expect = 3e-13
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
S P C +C + ++L H +H RPF C+ C +Q L+ H K
Sbjct: 2 SSGSSGHPEKCS--ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 53.3 bits (129), Expect = 1e-10
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
C S +S + H RIH ++P+ C C + S+L KH
Sbjct: 15 CSYSCSSKAALRIHERIHCTDRPFKCN--YCSFDTKQPSNLSKHMKKF 60
Score = 30.9 bits (71), Expect = 0.025
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 11 CKISFASATNYKNHMRIHSGEKPY 34
C +N HM+ G+
Sbjct: 43 CSFDTKQPSNLSKHMKKFHGDMSG 66
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 58.6 bits (143), Expect = 1e-12
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHK 83
IHSGEKPY C +C K F+ S L +H VH+ +P+ C C +++ Q L H+
Sbjct: 5 SSGIHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Query: 84 KT 85
+
Sbjct: 63 RI 64
Score = 50.2 bits (121), Expect = 2e-09
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 64
+C +F+ ++ H R+H+GEKPY C +C K F++ S L H +H+
Sbjct: 19 ECGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLINHQRIHTSGPSS 71
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 58.6 bits (143), Expect = 1e-12
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHK 83
+ Y C +C K F+ S L KH H+ +P+ CD C +++ Q L H
Sbjct: 9 SEWQQRERRRYKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66
Query: 84 KT 85
+
Sbjct: 67 RV 68
Score = 47.4 bits (114), Expect = 3e-08
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
+C SF+ +++ H R H+GEKPY C +C K F + S L H VH
Sbjct: 23 ECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVH 69
Score = 31.3 bits (72), Expect = 0.023
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPY 34
+C +F ++ H R+H+G P
Sbjct: 51 ECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 29.3 bits (67), Expect = 0.11
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 49 SSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
S + + R + CD C +S+ L+ H++T
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 40
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 59.4 bits (145), Expect = 1e-12
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 25 MRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKK 84
SG+K Y CQ C K FT S +H +H +RP+ C C + ++ L H K
Sbjct: 2 SSGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Query: 85 T 85
Sbjct: 59 I 59
Score = 59.0 bits (144), Expect = 2e-12
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
C SF + HM +H G +PY C C K+F L H +H+ I+P+ C+ C
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Query: 70 PRSYRQLCTLNVH 82
+ + + + H
Sbjct: 72 AKRFMWRDSFHRH 84
Score = 54.8 bits (133), Expect = 7e-11
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
C F + HM+IH+G KPY C C KRF S ++H V S + + +
Sbjct: 42 VCGKKFKMKHHLVGHMKIHTGIKPYECN--ICAKRFMWRDSFHRH--VTSCTKSYEAAKA 97
Query: 70 PRSYRQLCTLN 80
++ + +
Sbjct: 98 EQNTTEASGPS 108
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 53.9 bits (130), Expect = 8e-11
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
+ C ++ +++ K H R H+GEKP+ C + C++RF L +H H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 49.3 bits (118), Expect = 5e-09
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 18 ATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD--RCPRSYRQ 75
++ S + ++C C K + + S L HT H+ +PF C C R + +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 76 LCTLNVHKKT 85
L+ H++T
Sbjct: 62 SDELSRHRRT 71
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 51.6 bits (123), Expect = 6e-10
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 16 ASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQ 75
S+ + +IH G++ C C F S+L + + +C++C + Q
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCS--KCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQ 51
Query: 76 LCTLNVHKKTNHRESKNKKPSN 97
LN + K PS+
Sbjct: 52 EAALNKDEGN-ESGKKTSGPSS 72
Score = 25.0 bits (54), Expect = 5.1
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPY 34
C+ SG+K
Sbjct: 44 KCRKDSCQEAALNKDEGNESGKKTS 68
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 6e-10
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GEKPY+C +C K FT S+L KH +H+ +P
Sbjct: 2 SSGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 35.6 bits (83), Expect = 4e-04
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F +N H +IH+ +KP
Sbjct: 17 ECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.9 bits (120), Expect = 1e-09
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
+ SGEKP+ C+ +C K F S Y H HS +P
Sbjct: 2 SSGSSGSGEKPFKCE--ECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 36.4 bits (85), Expect = 2e-04
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQ 37
+C F + + +H R HSGEKP
Sbjct: 17 ECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 2e-09
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GEKPY C+ +C K F LY H +VH+ +P
Sbjct: 2 SSGSSGTGEKPYKCE--ECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 4e-04
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F + H +H+GEKP
Sbjct: 17 ECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 2e-09
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ S EKPY C+ DC K + +L H VH +
Sbjct: 2 SSGSSGSVEKPYKCE--DCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
DC + N H R+H GEK
Sbjct: 17 DCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 2e-09
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR 68
+ +GEKPY C DC K FT S L H H+ R
Sbjct: 2 SSGSSGTGEKPYKCS--DCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 36.0 bits (84), Expect = 3e-04
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
DC SF + + H + H+GE+
Sbjct: 17 DCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 2e-09
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GEK Y C ++C K F+ L KH +HS +P
Sbjct: 2 SSGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C SF+ A H R+HSGEKP
Sbjct: 17 ECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 3e-09
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GE P++C +C K FT ++L H +H+ RP
Sbjct: 2 SSGSSGTGENPFIC--SECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F TN H +IH+GE+P
Sbjct: 17 ECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 49.1 bits (118), Expect = 3e-09
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ SGEKPY C +C K F S L H H+ +
Sbjct: 2 SSGSSGSGEKPYEC--NECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 32.5 bits (75), Expect = 0.004
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F + H R H+G
Sbjct: 17 ECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 3e-09
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C C K FT+ S L+ H +H+ +P
Sbjct: 3 SGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 6e-04
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 8 PWDCKI---SFASATNYKNHMRIHSGEKPYVC 36
P++C I SF + H +IH+GEKP
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 3e-09
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
SGEKPYVC C K F + L +H +H+ +P
Sbjct: 3 SGSSGSGEKPYVCD--YCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 4e-04
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C +F + H RIH+GEKP
Sbjct: 17 YCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 3e-09
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
+ +GEKP+ C C K F S L +H++VH+ +P
Sbjct: 2 SSGSSGTGEKPFKCD--ICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 35.5 bits (83), Expect = 4e-04
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C SF + H +H+ EKP
Sbjct: 17 ICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 3e-09
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ SGEKP+ C+ +C KRFT+ S L+ H VH+ +P
Sbjct: 2 SSGSSGSGEKPFKCE--ECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 8e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F + +H R+H+GEKP
Sbjct: 17 ECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C ++C K F S L KH VHS +P
Sbjct: 3 SGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 36.4 bits (85), Expect = 2e-04
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C SF A+ H R+HSGEKP
Sbjct: 17 ECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 49.0 bits (118), Expect = 4e-09
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 8 PWDCKI---SFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKH 54
+ C++ +FA + K H R H+ EKPY C C + FT L +H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRH 49
Score = 40.5 bits (96), Expect = 6e-06
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNH 87
+ +VC+ C + F L +H H++ +P+ C C R++ + L H + H
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 4e-09
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GE+PY+C C K FT+ S+L KH +H+ +P
Sbjct: 3 SGSSGTGERPYICT--VCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 3e-04
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQ 37
C +F +N H +IH+GEKP
Sbjct: 17 VCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
+GEKP+ C ++C F+ SL+KH H P
Sbjct: 3 SGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 36.8 bits (86), Expect = 1e-04
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 8 PWDCKI---SFASATNYKNHMRIHSGEKPYVC 36
P+ CK +F+ + + H+R H P
Sbjct: 12 PFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GEKPY C DC K FT S L+ H H+ R
Sbjct: 2 SSGSSGTGEKPYKCS--DCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 35.9 bits (84), Expect = 3e-04
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
DC +F + H + H+GE+
Sbjct: 17 DCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-09
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GEKPY C +C K F+ S L H HS +P
Sbjct: 2 SSGSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 36.0 bits (84), Expect = 3e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F+S + HMR HSGEKP
Sbjct: 17 ECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-09
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C C K F+ SL H +HS +P
Sbjct: 3 SGSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C +F+ + H RIHSG+KP
Sbjct: 17 VCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 6e-09
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C DC K F + S L+ H +H+ P
Sbjct: 3 SGSSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 36.0 bits (84), Expect = 3e-04
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
DC SF + H RIH+GE P
Sbjct: 17 DCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 6e-09
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
SGE+PY C +C K F +S L +H H +
Sbjct: 3 SGSSGSGERPYGCN--ECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 36.7 bits (86), Expect = 1e-04
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F ++ H++ H EK
Sbjct: 17 ECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 6e-09
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C +C K FT+ S+L+ H +H+ +P
Sbjct: 3 SGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F +N H +IH+GEKP
Sbjct: 17 ECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-09
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
SGEKP+ C+ +C KRFT+ S L+ H VH+ +P
Sbjct: 3 SGSSGSGEKPFQCE--ECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVC 36
C F ++ +H R+H+GEKP
Sbjct: 18 CGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.0 bits (115), Expect = 7e-09
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GEKPY C +C K F + SS +H +H+ RP
Sbjct: 2 SSGSSGTGEKPYKCM--ECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F ++ H R+H+G++P
Sbjct: 17 ECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-09
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR 68
+ +GEKPY C C K F + L +H VH+
Sbjct: 2 SSGSSGTGEKPYSC--NVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 36.0 bits (84), Expect = 3e-04
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 8 PWDCKI---SFASATNYKNHMRIHSGEKPYVC 36
P+ C + +F + + H+R+H+ E
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-09
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKP+ C DC K F+++ L +H +H+ +P
Sbjct: 3 SGSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
DC +F+ H RIH+GEKP
Sbjct: 17 DCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 47.9 bits (115), Expect = 7e-09
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 64
GEKPY C C K F++ SL H VH+ P
Sbjct: 2 SSGSSGGEKPYRCD--QCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 32.9 bits (76), Expect = 0.003
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPY 34
C +F+ + H+R+H+G P
Sbjct: 16 QCGKAFSQKGSLIVHIRVHTGSGPS 40
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-09
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY CQ C K F S L +H VHS RP
Sbjct: 3 SGSSGTGEKPYKCQ--VCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 34.8 bits (81), Expect = 6e-04
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C +F +++ H +HSGE+P
Sbjct: 17 VCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.9 bits (115), Expect = 8e-09
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +G KPYVC +C K F S L HT H+
Sbjct: 2 SSGSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 36.3 bits (85), Expect = 2e-04
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F S + H R H+GE
Sbjct: 17 ECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 8e-09
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C C K F+ SSL H +H+ +P
Sbjct: 3 SGSSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C +F+ ++ H IH+G+KP
Sbjct: 17 QCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 47.9 bits (115), Expect = 9e-09
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKP+ C +C K F+ S L H +H+ +P
Sbjct: 3 SGSSGTGEKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 2e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C SF+ ++ H RIH+GEKP
Sbjct: 17 ECGKSFSISSQLATHQRIHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.9 bits (115), Expect = 9e-09
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C +CQK F S+L H H+
Sbjct: 3 SGSSGTGEKPYECN--ECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 35.9 bits (84), Expect = 3e-04
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C+ +F + +N H R H+GE
Sbjct: 17 ECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 47.9 bits (115), Expect = 9e-09
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GEKP+ C +C K F+ S+L H +H+ +P
Sbjct: 2 SSGSSGTGEKPFKCV--ECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F+ + H ++H+GEKP
Sbjct: 17 ECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +G KPY+C +C K F+ YSSL H ++H+ +P
Sbjct: 2 SSGSSGTGVKPYMCN--ECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F+ ++ H IH+GEKP
Sbjct: 17 ECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GE+ Y C +C K F S+L H +H+ +P
Sbjct: 3 SGSSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +FA + H RIH+GEKP
Sbjct: 17 ECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C C+K F+ ++SL +H VHS +P
Sbjct: 3 SGSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 35.6 bits (83), Expect = 4e-04
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C+ +F+ + H R+HSGEKP
Sbjct: 17 VCRKAFSHHASLTQHQRVHSGEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+G++PY C +C K F SSL H H+ +P
Sbjct: 3 SGSSGTGQRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F + ++ H R H+GEKP
Sbjct: 17 ECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
+ SGEKPY C +C K + L H VH+ +
Sbjct: 2 SSGSSGSGEKPYKCV--ECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 35.2 bits (82), Expect = 6e-04
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C + + H R+H+GEK
Sbjct: 17 ECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 47.6 bits (114), Expect = 1e-08
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHT-LVHSDIRPFICDRCPRSYRQ 75
+ S KPY+CQ C K F+ L H VH+ RP C
Sbjct: 2 SSGSSGSVGKPYICQ--SCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 39.1 bits (92), Expect = 2e-05
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 10 DCKISFASATNYKNHM-RIHSGEKPYVCQVRDCQKRFT 46
C F+ + H+ ++H+ E+P+ CQV +
Sbjct: 17 SCGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGPS 52
Score = 28.7 bits (65), Expect = 0.16
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 54 HTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNH 87
S +P+IC C + + + LN H K H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 1e-08
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GEKPY C +C K F++ S L +H +H+ +P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 4e-04
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F+ + H RIH+GEKP
Sbjct: 17 ECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 1e-08
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKP+ C R+C K F+ S L H +H+ P
Sbjct: 3 SGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 34.8 bits (81), Expect = 6e-04
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C SF+ + H RIH+GE P
Sbjct: 17 ECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-08
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C +C K F SSL H HS +P
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F + ++ H HSGEKP
Sbjct: 17 ECGKAFRARSSLAIHQATHSGEKPSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 47.1 bits (113), Expect = 2e-08
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
GEKPY C+ C RF + + L H L+H
Sbjct: 2 SSGSSGGEKPYKCE--TCGARFVQVAHLRAHVLIH 34
Score = 36.7 bits (86), Expect = 1e-04
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPY 34
C F + + H+ IH+G P
Sbjct: 16 TCGARFVQVAHLRAHVLIHTGSGPS 40
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-08
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
SGEKPY C +C K F++ S L H H+ +P
Sbjct: 3 SGSSGSGEKPYGCN--ECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 3e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F+ + H R H+GEKP
Sbjct: 17 ECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-08
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GE+P+ C +C K F + + L +H +H+ +P
Sbjct: 2 SSGSSGTGERPHKCN--ECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C SF + + H RIH+GEKP
Sbjct: 17 ECGKSFIQSAHLIQHQRIHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 2e-08
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GE+ Y C +C K F + S+L H +H +P
Sbjct: 3 SGSSGTGERHYECS--ECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 34.8 bits (81), Expect = 6e-04
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F + H RIH GEKP
Sbjct: 17 ECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 2e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+G KPY C +C K F++ S L +H VH+ +P
Sbjct: 3 SGSSGTGGKPYQCN--ECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 4e-04
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F+ + H R+H+GEKP
Sbjct: 17 ECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +G K + C +C K FT S+L H +H+ +P
Sbjct: 2 SSGSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 6e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F + H +IH+GEKP
Sbjct: 17 ECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GEKP+ C +CQK F S+L H H+ +P
Sbjct: 2 SSGSSGTGEKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 8e-04
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C+ +F + +N H R H+GEKP
Sbjct: 17 ECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 2e-08
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C+ C K + +L H VH+ RP
Sbjct: 3 SGSSGTGEKPYKCE--KCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 35.6 bits (83), Expect = 4e-04
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C + S N H ++H+GE+P
Sbjct: 17 KCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C ++C K F++ + L +H VH+ +P
Sbjct: 3 SGSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F+ T+ H R+H+GEKP
Sbjct: 17 ECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 2e-08
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C +C K F S L +H +H+ +P
Sbjct: 3 SGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F + + H RIH+GEKP
Sbjct: 17 ECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 2e-08
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
GEK Y C C K F++ S L H VH+ +P
Sbjct: 3 SGSSGMGEKCYKCD--VCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 8e-04
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C F+ +++ + H R+H+GEKP
Sbjct: 17 VCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 46.8 bits (112), Expect = 2e-08
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +G KPY C C K F+ S L H H+ ++P
Sbjct: 2 SSGSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C +F+ + H R H+G KP
Sbjct: 17 QCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 2e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C+ C K FT+ + L +H H+ +P
Sbjct: 3 SGSSGTGEKPYECK--VCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 3e-04
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C +F + H + H+GEKP
Sbjct: 17 VCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+G+K + C +C+K FT+ SSL H +H+ +P
Sbjct: 3 SGSSGAGKKLFKCN--ECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+CK +F +++ H RIH+GEKP
Sbjct: 17 ECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 3e-08
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ SGEKPY C +C K FT+ S L H +H+ +P
Sbjct: 2 SSGSSGSGEKPYKCN--ECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F ++ NH RIH+GEKP
Sbjct: 17 ECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 3e-08
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GEKPY C +C K FT+ S L +H +H+ +P
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F ++ H IH+GEKP
Sbjct: 17 ECGKVFTQNSHLVRHRGIHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 3e-08
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C C K F SSL H +H+ +P
Sbjct: 3 SGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQ 37
C SF ++ H RIH+GEKP
Sbjct: 17 VCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 3e-08
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
SGEKP+ C+ +C K F + L H +H+ +P
Sbjct: 3 SGSSGSGEKPFKCK--ECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 6e-04
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F + +H+RIH+GEKP
Sbjct: 17 ECGKAFRQNIHLASHLRIHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 4e-08
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GEKPY C +C K F + ++L +H +H+ +P
Sbjct: 2 SSGSSGTGEKPYRCG--ECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +FA N H RIH+GEKP
Sbjct: 17 ECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 46.0 bits (110), Expect = 4e-08
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +G+KP+ C C K F +L H +H+ +
Sbjct: 2 SSGSSGTGQKPFECT--HCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 36.0 bits (84), Expect = 2e-04
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C SF + N H RIH+GEK
Sbjct: 17 HCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 4e-08
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GE PY C +C K F+ L H H+ +P
Sbjct: 3 SGSSGTGENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F+ +H R H+GEKP
Sbjct: 17 ECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.0 bits (110), Expect = 4e-08
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ GE+ + C DC K F + S+ +H +H+ +P
Sbjct: 2 SSGSSGHGERGHRC--SDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 3e-04
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
DC F A+N+ H RIH+GEKP
Sbjct: 17 DCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 1.6
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 53 KHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
R C C + + Q H++
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI 34
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-08
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ +GEKPY C +C K F S L +H +H+ +P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F + H RIH+GEKP
Sbjct: 17 ECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 5e-08
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
SGEKPY C +C K F ++ L +H +H+ RP
Sbjct: 3 SGSSGSGEKPYKCS--ECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 34.8 bits (81), Expect = 6e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F T+ H RIH+G +P
Sbjct: 17 ECGKAFHRHTHLNEHRRIHTGYRPSGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 45.6 bits (109), Expect = 6e-08
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHT-LVHSDIRPFIC 66
+ +G+KPY C +C K F + +SL +H H+ +P
Sbjct: 2 SSGSSGTGKKPYECI--ECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 6e-08
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKP+ C +C K + + L +H VH+ +P
Sbjct: 3 SGSSGTGEKPFKCG--ECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C S+ + H R+H+GEKP
Sbjct: 17 ECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 6e-08
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C +C K FT+ S L +H VH+ +P
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F ++ H R+H+G KP
Sbjct: 17 ECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 45.6 bits (109), Expect = 7e-08
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR 68
GEK + C+ +C F++ SSL H VH +P
Sbjct: 3 SGSSGMGEKTWKCR--ECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 36.0 bits (84), Expect = 3e-04
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C + F+ A++ + H +H GEKP
Sbjct: 17 ECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 7e-08
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+G+KPY C +C K FT+ S L +H +H+ +P
Sbjct: 3 SGSSGTGKKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.001
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVC 36
C F ++ H IH+GEKP
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 7e-08
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY+C +C K F + S L +H +H+ +P
Sbjct: 3 SGSSGTGEKPYICN--ECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C SF ++ H RIH+GEKP
Sbjct: 17 ECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 45.3 bits (108), Expect = 8e-08
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 64
GE PY+C C K FT+ SL H S P
Sbjct: 2 SSGSSGGETPYLCG--QCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 33.8 bits (78), Expect = 0.001
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPY 34
C SF + H R S P
Sbjct: 16 QCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 28.4 bits (64), Expect = 0.13
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPS 96
P++C +C +S+ Q +L VH+++ + PS
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQS----GPS 40
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 9e-08
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C +C K FT+ S L H +H+ ++P
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 34.8 bits (81), Expect = 8e-04
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F ++ NH RIH+G KP
Sbjct: 17 ECGKVFTQNSHLANHQRIHTGVKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 45.2 bits (108), Expect = 9e-08
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEK Y C +C K F+ S L +H +H+ +P
Sbjct: 3 SGSSGTGEKRYKCN--ECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 6e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F+ + H +IH+GEKP
Sbjct: 17 ECGKVFSRNSQLSQHQKIHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 9e-08
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C +C K F +S+L H ++H+ +P
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 5e-04
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F + +N H IH+GEKP
Sbjct: 17 ECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 9e-08
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C +C K FT+ S L +H +H+ +P
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F ++ H IH+GEKP
Sbjct: 17 ECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 44.8 bits (107), Expect = 9e-08
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 64
GEKPY C++ C RF +L H +H+ P
Sbjct: 2 SSGSSGGEKPYPCEI--CGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 40.2 bits (95), Expect = 6e-06
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 8 PWDCKI---SFASATNYKNHMRIHSGEKPY 34
P+ C+I F K+H+RIH+G P
Sbjct: 11 PYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 1e-07
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKPY C +C K F S L +H L+H+ +P
Sbjct: 3 SGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.001
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F ++ H IH+GEKP
Sbjct: 17 ECGKVFRRNSHLARHQLIHTGEKPSGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.9 bits (107), Expect = 1e-07
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
SGEK + C +C K F S+L H VH
Sbjct: 3 SGSSGSGEKSHTCD--ECGKNFCYISALRIHQRVHM 36
Score = 32.2 bits (74), Expect = 0.006
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F + + H R+H GEK
Sbjct: 17 ECGKNFCYISALRIHQRVHMGEKCSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 44.9 bits (107), Expect = 1e-07
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GEKP C +C K F S L H H D +
Sbjct: 3 SGSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 34.5 bits (80), Expect = 0.001
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F + H R H +K
Sbjct: 17 ECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 44.5 bits (106), Expect = 2e-07
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+G PY C C+K F+ L H +H+ +P
Sbjct: 3 SGSSGAGVNPYKCS--QCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 35.6 bits (83), Expect = 3e-04
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C+ SF+ H R+H+ EKP
Sbjct: 17 QCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.5 bits (106), Expect = 2e-07
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
SG+KPY C+ +C+K F + L +H VH+ R
Sbjct: 3 SGSSGSGKKPYECK--ECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 36.0 bits (84), Expect = 3e-04
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 8 PWDCKI---SFASATNYKNHMRIHSGEKPYVC 36
P++CK +F + H R+H+GE+
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 2e-07
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
GEKPY C +C K F+ L +H + H+ +P
Sbjct: 3 SGSSGEGEKPYQCS--ECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 35.2 bits (82), Expect = 4e-04
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C SF+ + H H+ EKP
Sbjct: 17 ECGKSFSGSYRLTQHWITHTREKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.1 bits (105), Expect = 2e-07
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+ S K + C +C + FT S L +H +H+ +P
Sbjct: 2 SSGSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.001
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F ++ H RIH+GEKP
Sbjct: 17 ECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 45.5 bits (107), Expect = 3e-07
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 10 DCKISFASATNYKNHMRI--HSGEKPYVC-QVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
DC ++ + HM H + + + SL + + C
Sbjct: 24 DCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKC 83
Query: 67 DRCPRSYRQLCTLNVH-KKTNHRESK 91
C S+ L L+VH KT H +
Sbjct: 84 MYCGHSFESLQDLSVHMIKTKHYQKV 109
Score = 36.7 bits (84), Expect = 5e-04
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 49 SSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVH-KKTNHRESKNKKPSNRN 99
SS + + + F C C +Y L L VH +T H N + N N
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNN 56
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 3e-07
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
SGE+P+ C +C K F S L H +HS +
Sbjct: 3 SGSSGSGERPFKCN--ECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 34.8 bits (81), Expect = 7e-04
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F ++ H+R+HS EK
Sbjct: 17 ECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 24.4 bits (54), Expect = 4.7
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 53 KHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPS 96
S RPF C+ C + + + L H + + RE K S
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSRE----KSS 41
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.3 bits (103), Expect = 4e-07
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
+GE PY C +C K F+ L H HS
Sbjct: 3 SGSSGTGENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 31.3 bits (72), Expect = 0.013
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C F+ +H + HSG+
Sbjct: 17 ECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 43.3 bits (103), Expect = 4e-07
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
SGE PY C +C K F L H H+
Sbjct: 3 SGSSGENPYECS--ECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 34.4 bits (80), Expect = 8e-04
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F +H R H+GE
Sbjct: 15 ECGKAFNRKDQLISHQRTHAGESGPSS 41
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.0 bits (102), Expect = 7e-07
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+ K Y C +C K FT L +H +H+
Sbjct: 3 SGSSGTDSKSYNCN--ECGKAFTRIFHLTRHQKIHT 36
Score = 25.2 bits (56), Expect = 1.8
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+C +F + H +IH+ +
Sbjct: 17 ECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 41.4 bits (98), Expect = 2e-06
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 66
SGEKP+ C C+K F+ S L H H++ +P
Sbjct: 3 SGSSGEKPFGC--SCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 35.2 bits (82), Expect = 4e-04
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
C+ +F+S + H + H+ EKP
Sbjct: 15 CCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 24.0 bits (53), Expect = 5.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 57 VHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
S +PF C C +++ L VH++T
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQT 32
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 42.0 bits (98), Expect = 2e-06
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESK 91
Y+C+ +C R + S L KH H+D+RP+ C C S++ L H K+ K
Sbjct: 2 YICE--ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 38.9 bits (90), Expect = 2e-05
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
C I + K H+R H+ +PY C C F +L KH +
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKSKA 53
Score = 27.0 bits (59), Expect = 0.61
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 10 DCKISFASATNYKNHMRIHSGEK 32
C SF + N HM+ + K
Sbjct: 34 YCNFSFKTKGNLTKHMKSKAHSK 56
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 40.4 bits (95), Expect = 4e-06
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
R +G KP+ C DC + F+ L H H
Sbjct: 2 STRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34
Score = 29.6 bits (67), Expect = 0.052
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 54 HTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
T + I+PF C C RS+ + L +H+K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 41.1 bits (96), Expect = 1e-05
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 10 DCKISFASATNYKNHM-RIHSGEKP---YVCQVRDCQ---KRFTEYSSLYKHTLVHSDIR 62
C +F++ H+ H G +VC +C K F L H VH+ +
Sbjct: 30 SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
Query: 63 PFIC 66
Sbjct: 90 SGPS 93
Score = 31.9 bits (72), Expect = 0.020
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 27 IHSGEKPYVCQVRDCQKRFTEYSSLYKH-TLVHSDIRPFI--------CDRCPRSYRQLC 77
I + + C + F+ L H T+ H C R +S++
Sbjct: 19 IDEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 78 TLNVHKKT 85
L H +
Sbjct: 77 KLVNHIRV 84
Score = 26.9 bits (59), Expect = 1.2
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 57 VHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKP 95
+ C R++ + L H H +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 39.6 bits (93), Expect = 1e-05
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
SGEKPY C +C++ F++ + L +H +H+
Sbjct: 3 SGSSGEKPYSCA--ECKETFSDNNRLVQHQKMHT 34
Score = 27.7 bits (62), Expect = 0.30
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVC 36
+CK +F+ H ++H+ +
Sbjct: 15 ECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 24.6 bits (54), Expect = 3.7
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 58 HSDIRPFICDRCPRSYRQLCTLNVHKKTNHRES 90
S +P+ C C ++ L H+K + +S
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKS 37
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 38.4 bits (89), Expect = 4e-05
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 69
K C++ C K F + L +H L HS +P+
Sbjct: 5 SSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 35.7 bits (82), Expect = 4e-04
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVC 36
C F + H HSGEKPY
Sbjct: 18 CGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 28.4 bits (63), Expect = 0.19
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKT 85
+ C+ C + +R + LN HK +
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLS 34
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 37.5 bits (87), Expect = 7e-05
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
+ +GE P+ C C + FT+ + L +H H+
Sbjct: 2 SSGSSGAGENPFKCS--KCDRVFTQRNYLVQHERTHAR 37
Score = 30.2 bits (68), Expect = 0.039
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 53 KHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRES 90
+ PF C +C R + Q L H++T+ R+S
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 24.8 bits (54), Expect = 3.0
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 10 DCKISFASATNYKNHMRIHSGEKP 33
C F H R H+ +
Sbjct: 17 KCDRVFTQRNYLVQHERTHARKSG 40
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 36.8 bits (86), Expect = 1e-04
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 64
SG++ Y CQ +C K F + SL H +H+ P
Sbjct: 3 SGSSGQRVYECQ--ECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 32.5 bits (75), Expect = 0.004
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPY 34
+C SF + H RIH+G P
Sbjct: 15 ECGKSFRQKGSLTLHERIHTGSGPS 39
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 38.4 bits (88), Expect = 1e-04
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCP 70
++Y + +VC + C F+ SL +H +C C
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPL--CLMPFSSSVSLKQHIRYTE--HTKVCPVCK 107
Query: 71 RSYRQLCTLNVHKKTNHR 88
+ + + H H
Sbjct: 108 KEFTSTDSALDHVCKKHN 125
Score = 28.4 bits (62), Expect = 0.58
Identities = 12/81 (14%), Positives = 21/81 (25%), Gaps = 2/81 (2%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKR--FTEYSSLYKHTLVHSDIRPFICDR 68
I + H ++ V+ + SS L I F+C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 69 CPRSYRQLCTLNVHKKTNHRE 89
C + +L H +
Sbjct: 80 CLMPFSSSVSLKQHIRYTEHT 100
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 38.0 bits (87), Expect = 2e-04
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCP 70
C +S +H R+ VC C RF +H + + C C
Sbjct: 22 CNAKLSSLLEQGSHERLC--RNAAVCPY--CSLRFFSPELKQEHE-SKCEYKKLTCLECM 76
Query: 71 RSYRQLCTLNVHKKTNHRE 89
R+++ ++ H+ H +
Sbjct: 77 RTFKSSFSIWRHQVEVHNQ 95
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 32.2 bits (74), Expect = 0.004
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIR 62
+P++C C KRFT L +H H+ +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 27.2 bits (61), Expect = 0.37
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 2 KPFFYFPW-DCKISFASATNYKNHMRIHSGEK 32
+PF W C F + + H R H+GEK
Sbjct: 1 RPF-MCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 30.9 bits (69), Expect = 0.016
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 28 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
SG++P+VC++ C FT ++ +H VH+D
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHTD 32
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.5 bits (65), Expect = 0.075
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 28 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
SGEKPY C V C RF + H H
Sbjct: 5 SSGEKPYSCPV--CGLRFKRKDRMSYHVRSHD 34
Score = 27.2 bits (59), Expect = 0.51
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 58 HSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSN 97
S +P+ C C +++ ++ H +++ PS+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS 44
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 28.5 bits (64), Expect = 0.11
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+K ++C ++ C K + + S L H H+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
Score = 26.5 bits (59), Expect = 0.59
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 10 DCKISFASATNYKNHMRIHSGEK 32
C + ++ + H+R H+GE+
Sbjct: 15 GCGKVYGKTSHLRAHLRWHTGER 37
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 28.7 bits (64), Expect = 0.13
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIR 62
+K + C C K F ++ H H + R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 28.0 bits (62), Expect = 0.16
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
++PY C C K F L +H H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.2 bits (62), Expect = 0.21
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
S EK + C R+C + F +Y SL +H ++H
Sbjct: 8 SREKSHQC--RECGEIFFQYVSLIEHQVLH 35
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 28.7 bits (63), Expect = 0.30
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 11 CKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 64
+ + K HM ++ + C C K+ + + H + + + P
Sbjct: 41 QAVGRKTIEGLKKHMENC-KQEMFTCH--HCGKQLRSLAGMKYHVMANHNSLPS 91
Score = 25.2 bits (54), Expect = 6.2
Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 45 FTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNH 87
L KH F C C + R L + H NH
Sbjct: 45 RKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMKYHVMANH 86
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 27.4 bits (60), Expect = 0.31
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
KPYVC CQ++F + +L +H +H+
Sbjct: 2 KPYVC--IHCQRQFADPGALQRHVRIHT 27
Score = 27.0 bits (59), Expect = 0.44
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1 MKPFFYFPWDCKISFASATNYKNHMRIHSGEK 32
MKP Y C+ FA + H+RIH+GEK
Sbjct: 1 MKP--YVCIHCQRQFADPGALQRHVRIHTGEK 30
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 27.7 bits (61), Expect = 0.39
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTL-------VHSDIRPFIC--DRCPRSYRQLCTLNVHKK 84
C+ ++C + + L +H L + P C + C ++ H
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN 61
Query: 85 TNH 87
H
Sbjct: 62 AQH 64
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 26.6 bits (58), Expect = 0.61
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
+KP++C C +RFT L H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 29.1 bits (64), Expect = 0.70
Identities = 8/35 (22%), Positives = 8/35 (22%), Gaps = 2/35 (5%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
S Y C V C L H H
Sbjct: 173 PTASSGHGYQCHV--CSAVLFSPLDLDAHVASHGL 205
Score = 27.5 bits (60), Expect = 2.1
Identities = 8/74 (10%), Positives = 19/74 (25%)
Query: 57 VHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSNRNNIVKQECVQKINSNPTT 116
S + C C L+ H ++ S+ E + ++P
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFISSWQNHPIV 233
Query: 117 KLLNNNSIAILDTS 130
++ +
Sbjct: 234 QVSADVENKKTAQL 247
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 27.6 bits (60), Expect = 0.80
Identities = 11/62 (17%), Positives = 16/62 (25%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
R VC + R T + C C + ++ LN H
Sbjct: 17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Query: 86 NH 87
H
Sbjct: 77 EH 78
Score = 27.2 bits (59), Expect = 1.3
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 11 CKISFASATNYKNHMRI-HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 63
++ + K HM + + CQ C+K+F + L HT+ +P
Sbjct: 31 NVVTRKTLVGLKKHMEVCQKLQDALKCQ--HCRKQFKSKAGLNYHTMAEHSAKP 82
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 27.9 bits (61), Expect = 1.3
Identities = 10/64 (15%), Positives = 17/64 (26%)
Query: 21 YKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLN 80
++ I GE V D KR S H + + ++ + L
Sbjct: 166 FRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLR 225
Query: 81 VHKK 84
Sbjct: 226 GPIH 229
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 28.2 bits (62), Expect = 1.4
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 64 FICDRCPRSYRQLCTLNVHKKTNHR 88
++C+ C + + L+ H +++HR
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHR 141
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus}
SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A*
1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A*
2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Length = 435
Score = 27.2 bits (61), Expect = 2.6
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 30 GEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRS 72
G+ P QV K + K + S + + D P +
Sbjct: 97 GQIPTPEQVSWVSKEWA------KRAALPSHVVTML-DNFPTN 132
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 2.8
Identities = 13/101 (12%), Positives = 32/101 (31%), Gaps = 38/101 (37%)
Query: 6 YFPWDCKISFASATNY-KNHMRIHSGEKPYVCQVRDCQ--KRFTEYSSLY------KHTL 56
+ D + Y +H+ H +++ + +R T + ++ + +
Sbjct: 459 FDSDDLIPPYLD--QYFYSHIGHH---------LKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 57 VHSDI------------------RPFICDRCPRSYRQLCTL 79
H +P+ICD P+ R + +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.1 bits (54), Expect = 2.9
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPS 96
+P+ CD C + Y+ L+ H +H + +
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDK 40
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo
sapiens} PDB: 2ke1_A 2kft_A
Length = 66
Score = 25.1 bits (55), Expect = 4.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 66 CDRCPRSYRQLC 77
CD CPR++ C
Sbjct: 23 CDGCPRAFHLAC 34
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding
protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A*
1mm3_A
Length = 61
Score = 24.7 bits (54), Expect = 4.4
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 66 CDRCPRSYRQLC 77
CD CP SY C
Sbjct: 24 CDTCPSSYHIHC 35
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B,
MI2-beta, PHD, protein binding, peptide binding metal
binding protein; NMR {Homo sapiens}
Length = 61
Score = 24.7 bits (54), Expect = 5.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 66 CDRCPRSYRQLC 77
CD CPR+Y +C
Sbjct: 26 CDTCPRAYHMVC 37
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 24.2 bits (53), Expect = 6.5
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 66 CDRCPRSYRQLC 77
CD C R Y C
Sbjct: 24 CDTCSRVYHLDC 35
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 23.4 bits (51), Expect = 7.2
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRE 89
R F+C+ C R++ + L H +++ E
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 23.4 bits (51), Expect = 7.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 11 CKISFASATNYKNHMRIHSGEK 32
C +FA + K H R H+ EK
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEK 29
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 23.2 bits (49), Expect = 8.4
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+PY C V C KRF+ + H VH+
Sbjct: 2 RPYSCSV--CGKRFSLKHQMETHYRVHT 27
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 23.2 bits (49), Expect = 8.5
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
KP C + C K FT+ SSL H H+
Sbjct: 1 KPCQCVM--CGKAFTQASSLIAHVRQHT 26
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 23.1 bits (49), Expect = 8.6
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVH 58
KPYVC+ C KRF + S L H H
Sbjct: 1 KPYVCE--RCGKRFVQSSQLANHIRHH 25
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 25.6 bits (56), Expect = 8.6
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 96 SNRNNIVKQECVQKINSNPTTKLLNNNSIAILDTSGSSNNNEEKYFLMEL 145
N N + E V I + L +I IL +N+ +Y +
Sbjct: 287 KNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTS 336
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 23.9 bits (52), Expect = 9.9
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 66 CDRCPRSYRQLC 77
CD C R Y C
Sbjct: 20 CDTCSRVYHLDC 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.402
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,088,216
Number of extensions: 100780
Number of successful extensions: 903
Number of sequences better than 10.0: 1
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 426
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)