RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6598
(154 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 44.7 bits (105), Expect = 7e-08
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
+K Y CQ C K FT S +H +H +RP+ C C + ++ L H K
Sbjct: 1 DKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52
Score = 33.9 bits (77), Expect = 7e-04
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 7 FPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
+P C SF + HM +H G +PY C V C K+F L H +H
Sbjct: 4 YPCQCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53
Score = 23.1 bits (49), Expect = 5.4
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 1 MKPFFYFPWDCKISFASATNYKNHMRIH 28
+ Y C F + HM+IH
Sbjct: 26 LGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 43.6 bits (103), Expect = 1e-07
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
R +G KP+ C DC + F+ L H H
Sbjct: 2 STRGSTGIKPFQCP--DCDRSFSRSDHLALHRKRH 34
Score = 33.6 bits (77), Expect = 7e-04
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 54 HTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
T + I+PF C C RS+ + L +H+K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 23.5 bits (51), Expect = 2.5
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIH 28
KPF D SF+ + + H + H
Sbjct: 10 KPFQCPDCDR--SFSRSDHLALHRKRH 34
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 42.6 bits (101), Expect = 3e-07
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 27 IHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
IHSGEKPY C +C K F+ S L +H VH+
Sbjct: 1 IHSGEKPYGCV--ECGKAFSRSSILVQHQRVHT 31
Score = 32.6 bits (75), Expect = 0.001
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 57 VHSDIRPFICDRCPRSYRQLCTLNVHKKT 85
+HS +P+ C C +++ + L H++
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQRV 29
Score = 30.3 bits (69), Expect = 0.009
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 10 DCKISFASATNYKNHMRIHSGE 31
+C +F+ ++ H R+H+GE
Sbjct: 12 ECGKAFSRSSILVQHQRVHTGE 33
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 42.5 bits (100), Expect = 3e-07
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 24 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+ Y C +C K F+ S L KH H+
Sbjct: 3 SEWQQRERRRYKCD--ECGKSFSHSSDLSKHRRTHT 36
Score = 32.1 bits (73), Expect = 0.002
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 53 KHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 89
+ + R + CD C +S+ L+ H++T+ E
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 29.7 bits (67), Expect = 0.017
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGE 31
+ + SF+ +++ H R H+GE
Sbjct: 11 RRYKCDECGK--SFSHSSDLSKHRRTHTGE 38
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 42.0 bits (99), Expect = 4e-07
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
R H+GEKPY C C K F + L H + D
Sbjct: 1 RTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHD 33
Score = 33.5 bits (77), Expect = 6e-04
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 57 VHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRES 90
H+ +P+ C C +++RQ L++H K H +
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 26.6 bits (59), Expect = 0.20
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 10 DCKISFASATNYKNHMRIHSGEK 32
C +F H + +
Sbjct: 13 HCDKTFRQKQLLDMHFKRYHDPN 35
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 41.5 bits (98), Expect = 7e-07
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 26 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
R HSGEKPY C C RFT+ ++ H L
Sbjct: 1 RTHSGEKPYECY--ICHARFTQSGTMKMHILQK 31
Score = 32.6 bits (75), Expect = 0.001
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 57 VHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 89
HS +P+ C C + Q T+ +H H E
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE 34
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 40.3 bits (94), Expect = 2e-06
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 23 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+ +K + C C K F ++ H H
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL 44
Score = 36.4 bits (84), Expect = 7e-05
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEK 32
K F C +F N ++H++ H ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 39.7 bits (93), Expect = 3e-06
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 10 DCKISFASATNYKNHMRIHSGEKPYVCQ 37
C SF + K HM++HS + Y+C+
Sbjct: 8 ACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 37.4 bits (87), Expect = 2e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 67
+ C C K F L +H +HSD R +IC+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 38.1 bits (89), Expect = 1e-05
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 10 DCKISFASATNYKNHMR-IHSGEKPYVCQV 38
C F+ + H++ +H+ E+P+ CQV
Sbjct: 10 SCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 38.1 bits (89), Expect = 1e-05
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 29 SGEKPYVCQVRDCQKRFTEYSSLYKHT-LVHSDIRPFICD 67
S KPY+CQ C K F+ L H VH+ RP C
Sbjct: 1 SVGKPYICQ--SCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 28.4 bits (64), Expect = 0.045
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNH 87
+P+IC C + + + LN H K H
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVH 29
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 36.9 bits (86), Expect = 3e-05
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
++PY C C K F L +H H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 25.4 bits (56), Expect = 0.52
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGE 31
+P+ C +F + H + H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 35.5 bits (82), Expect = 1e-04
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 28 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 60
SG++P+VC+ C FT ++ +H VH+D
Sbjct: 2 SSGKRPFVCR--ICLSAFTTKANCARHLKVHTD 32
Score = 29.3 bits (66), Expect = 0.023
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 58 HSDIRPFICDRCPRSYRQLCTLNVHKKTNHRES 90
S RPF+C C ++ H K H ++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV-HTDT 33
Score = 27.0 bits (60), Expect = 0.14
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGE 31
+PF C +F + N H+++H+
Sbjct: 6 RPFVC--RICLSAFTTKANCARHLKVHTDT 33
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 34.8 bits (80), Expect = 2e-04
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVH 58
KPYVC++ C KR+T+ SSL KH
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTV 27
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 34.2 bits (79), Expect = 3e-04
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+P++C C KRFT L +H H+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
Score = 33.1 bits (76), Expect = 8e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEK 32
+PF C F + + H R H+GEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 33.8 bits (78), Expect = 4e-04
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+PY C V C +RF+ + L +H +H+
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHT 28
Score = 26.5 bits (59), Expect = 0.17
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSG 30
+P+ C F+ + + H+RIH+G
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 33.8 bits (78), Expect = 4e-04
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
KP+ C C+K ++ +L H H+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHT 28
Score = 30.4 bits (69), Expect = 0.007
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGE 31
KP C+ S++ N K H+R H+GE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 33.1 bits (76), Expect = 7e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+PYVC C K+F + ++L H L H+
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 23.8 bits (52), Expect = 1.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 10 DCKISFASATNYKNHMRIHS 29
C FA +TN K+H+ H+
Sbjct: 9 GCNKKFAQSTNLKSHILTHA 28
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 32.6 bits (75), Expect = 0.001
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+KP+ C+ C + F+ L H H+
Sbjct: 1 QKPFQCR--ICMRNFSRSDHLTTHIRTHT 27
Score = 27.2 bits (61), Expect = 0.11
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKT 85
+PF C C R++ + L H +T
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT 25
Score = 25.6 bits (57), Expect = 0.33
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 10 DCKISFASATNYKNHMRIHSG 30
C +F+ + + H+R H+G
Sbjct: 8 ICMRNFSRSDHLTTHIRTHTG 28
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 32.3 bits (74), Expect = 0.002
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
KP+ C C KRF+ +L H +H+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT 28
Score = 25.8 bits (57), Expect = 0.34
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGE 31
KPF C F+ N + H+RIH+G+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 30.7 bits (70), Expect = 0.006
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 10 DCKISFASATNYKNHMRIHSGEK 32
C +FA + K H R H+ EK
Sbjct: 7 VCTRAFARQEHLKRHYRSHTNEK 29
Score = 29.9 bits (68), Expect = 0.013
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+ +VC+V C + F L +H H+
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHT 26
Score = 26.8 bits (60), Expect = 0.16
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKT 85
R F+C+ C R++ + L H ++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 30.4 bits (69), Expect = 0.008
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 10 DCKISFASATNYKNHMRIHSGEK 32
+C F + + H++ H +K
Sbjct: 7 ECPKRFMRSDHLSKHIKTHQNKK 29
Score = 28.8 bits (65), Expect = 0.030
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
K + C +C KRF L KH H
Sbjct: 1 KKFACP--ECPKRFMRSDHLSKHIKTHQ 26
Score = 26.2 bits (58), Expect = 0.27
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKT 85
+ F C CP+ + + L+ H KT
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKT 24
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 28.7 bits (64), Expect = 0.035
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKH-TLVHSD 60
KPY+C+ C K F+ S KH HS+
Sbjct: 1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN 30
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 27.6 bits (62), Expect = 0.070
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
KPY C +C K F++ S L H +H+
Sbjct: 1 KPYKC--LECGKAFSQNSGLINHQRIHT 26
Score = 23.3 bits (51), Expect = 2.3
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKT 85
+P+ C C +++ Q L H++
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRI 24
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 26.6 bits (58), Expect = 0.20
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
KP+ C+ C+K FT L +H+L H+
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT 28
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 25.0 bits (54), Expect = 0.80
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVHS 59
+ PY C C KRF+ S L +H VH+
Sbjct: 1 QLPYECPHEGCDKRFSLPSRLKRHEKVHA 29
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 24.8 bits (54), Expect = 0.98
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 31 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 58
+KP++C C +RFT L H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 24.6 bits (53), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTLVHS 59
+VC +C K F E S L +H LVH+
Sbjct: 3 HVCA--ECGKAFVESSKLKRHQLVHT 26
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 23.9 bits (52), Expect = 2.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 15 FASATNYKNHMRIHSGE 31
F + HMR H+GE
Sbjct: 17 FKAQYMLVVHMRRHTGE 33
Score = 23.1 bits (50), Expect = 3.8
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 32 KPYVCQVRDCQKRFTEYSSLYK---HTLVHS 59
K +VC C + + + Y H H+
Sbjct: 1 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 31
>d1wfea_ g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 24.2 bits (52), Expect = 4.3
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 23/100 (23%)
Query: 17 SATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQL 76
S N K Y C + C ++ IC C +++
Sbjct: 9 SEVNVVKERPKTDEHKSYSCSFKGCTDV---------------ELVAVICPYCEKNF--- 50
Query: 77 CTLNVHKKTNHRESKNKKPSNRNNIVKQECVQKINSNPTT 116
C L +++H K + R + + + S P++
Sbjct: 51 C-LRHRHQSDHDCEKLEVAKPRMAATQ----KLVRSGPSS 85
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 22.8 bits (48), Expect = 4.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 34 YVCQVRDCQKRFTEYSSLYKHTLVHS 59
YVC +C K F +++ L H H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHT 27
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 22.3 bits (47), Expect = 6.9
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 11 CKISFASATNYKNHMRIHSGEKPY 34
C F + H HSGEKPY
Sbjct: 11 CGKIFRDVYHLNRHKLSHSGEKPY 34
Score = 22.3 bits (47), Expect = 7.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 41 CQKRFTEYSSLYKHTLVHSDIRPF 64
C K F + L +H L HS +P+
Sbjct: 11 CGKIFRDVYHLNRHKLSHSGEKPY 34
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 21.9 bits (46), Expect = 8.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTN 86
RPF C CP + R L VH +++
Sbjct: 2 RPFKCQICPYASRNSSQLTVHLRSH 26
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 21.7 bits (46), Expect = 9.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHR 88
+PF CD C R + + H K + R
Sbjct: 2 KPFACDICGRKFARSDERKRHTKIHLR 28
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.9 bits (46), Expect = 9.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 36 CQVRDCQKRFTEYSSLYKHTLVH 58
C + C K F + S++ KH H
Sbjct: 4 CPHKGCTKMFRDNSAMRKHLHTH 26
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 21.9 bits (46), Expect = 9.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 62 RPFICDRCPRSYRQLCTLNVHKKTNHRE 89
RPF C+ C +Q L+ H K H +
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD 28
>d1j3ga_ d.118.1.1 (A:) AmpD protein {Citrobacter freundii [TaxId:
546]}
Length = 187
Score = 23.9 bits (51), Expect = 9.4
Identities = 8/62 (12%), Positives = 17/62 (27%)
Query: 2 KPFFYFPWDCKISFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 61
Y + F+ + + + Y T Y ++ + H +I
Sbjct: 98 GVSSYQGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTNALITRYPAIANNMTGHCNI 157
Query: 62 RP 63
P
Sbjct: 158 AP 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.402
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 540,733
Number of extensions: 22346
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 92
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)