BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6599
(93 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242024443|ref|XP_002432637.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
gi|212518107|gb|EEB19899.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
Length = 438
Score = 184 bits (468), Expect = 5e-45, Method: Composition-based stats.
Identities = 77/80 (96%), Positives = 79/80 (98%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKG CPIDKTH
Sbjct: 6 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGRCPIDKTH 65
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQCRACRLNKCF++AMNKD
Sbjct: 66 RNQCRACRLNKCFIAAMNKD 85
>gi|328696467|ref|XP_003240033.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 459
Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats.
Identities = 78/81 (96%), Positives = 79/81 (97%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQG+LKG CPIDKT
Sbjct: 4 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGELKGRCPIDKT 63
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRLNKCF SAMNKD
Sbjct: 64 HRNQCRACRLNKCFQSAMNKD 84
>gi|195146576|ref|XP_002014260.1| GL19043 [Drosophila persimilis]
gi|194106213|gb|EDW28256.1| GL19043 [Drosophila persimilis]
Length = 819
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 76/83 (91%), Positives = 78/83 (93%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 67
S GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+D
Sbjct: 131 SAGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVD 190
Query: 68 KTHRNQCRACRLNKCFMSAMNKD 90
KTHRNQCRACRL KCF SAMNKD
Sbjct: 191 KTHRNQCRACRLAKCFQSAMNKD 213
>gi|195434755|ref|XP_002065368.1| GK14705 [Drosophila willistoni]
gi|194161453|gb|EDW76354.1| GK14705 [Drosophila willistoni]
Length = 730
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 75/81 (92%), Positives = 77/81 (95%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKT
Sbjct: 5 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKT 64
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF SAMNKD
Sbjct: 65 HRNQCRACRLAKCFQSAMNKD 85
>gi|312385998|gb|EFR30376.1| hypothetical protein AND_00091 [Anopheles darlingi]
Length = 787
Score = 181 bits (458), Expect = 6e-44, Method: Composition-based stats.
Identities = 78/86 (90%), Positives = 81/86 (94%), Gaps = 1/86 (1%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
TDN GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA G+LKG C
Sbjct: 24 TDNG-GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAAGELKGRC 82
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKD 90
P+DKTHRNQCRACRL+KCF SAMNKD
Sbjct: 83 PVDKTHRNQCRACRLSKCFQSAMNKD 108
>gi|157109777|ref|XP_001650818.1| Dissatisfaction (Dsf) [Aedes aegypti]
gi|108878920|gb|EAT43145.1| AAEL005381-PA, partial [Aedes aegypti]
Length = 723
Score = 180 bits (457), Expect = 9e-44, Method: Composition-based stats.
Identities = 76/84 (90%), Positives = 80/84 (95%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA G+LKG CP+DKT
Sbjct: 1 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAAGELKGRCPVDKT 60
Query: 70 HRNQCRACRLNKCFMSAMNKDDFK 93
HRNQCRACRL+KCF SAMNKDD +
Sbjct: 61 HRNQCRACRLSKCFQSAMNKDDVQ 84
>gi|195030592|ref|XP_001988152.1| GH11011 [Drosophila grimshawi]
gi|193904152|gb|EDW03019.1| GH11011 [Drosophila grimshawi]
Length = 719
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 76/85 (89%), Positives = 78/85 (91%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
D GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP
Sbjct: 7 DAQAGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCP 66
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
+DKTHRNQCRACRL KCF SAMNKD
Sbjct: 67 VDKTHRNQCRACRLAKCFQSAMNKD 91
>gi|195385346|ref|XP_002051367.1| GJ15408 [Drosophila virilis]
gi|194147824|gb|EDW63522.1| GJ15408 [Drosophila virilis]
Length = 726
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/81 (92%), Positives = 77/81 (95%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKT
Sbjct: 5 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKT 64
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF SAMNKD
Sbjct: 65 HRNQCRACRLAKCFQSAMNKD 85
>gi|158298421|ref|XP_318587.4| AGAP009575-PA [Anopheles gambiae str. PEST]
gi|157013872|gb|EAA14563.5| AGAP009575-PA [Anopheles gambiae str. PEST]
Length = 761
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/81 (92%), Positives = 78/81 (96%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA G+LKG CP+DKT
Sbjct: 1 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAAGELKGRCPVDKT 60
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL+KCF SAMNKD
Sbjct: 61 HRNQCRACRLSKCFQSAMNKD 81
>gi|225581113|gb|ACN94685.1| GA21482 [Drosophila miranda]
Length = 690
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/81 (92%), Positives = 77/81 (95%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKT
Sbjct: 5 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKT 64
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF SAMNKD
Sbjct: 65 HRNQCRACRLAKCFQSAMNKD 85
>gi|198475944|ref|XP_001357213.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
gi|198137475|gb|EAL34282.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
Length = 691
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/81 (92%), Positives = 77/81 (95%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKT
Sbjct: 5 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKT 64
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF SAMNKD
Sbjct: 65 HRNQCRACRLAKCFQSAMNKD 85
>gi|194760978|ref|XP_001962709.1| GF15588 [Drosophila ananassae]
gi|190616406|gb|EDV31930.1| GF15588 [Drosophila ananassae]
Length = 702
Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/81 (92%), Positives = 77/81 (95%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKT
Sbjct: 5 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKT 64
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF SAMNKD
Sbjct: 65 HRNQCRACRLAKCFQSAMNKD 85
>gi|195116317|ref|XP_002002702.1| GI17531 [Drosophila mojavensis]
gi|193913277|gb|EDW12144.1| GI17531 [Drosophila mojavensis]
Length = 736
Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats.
Identities = 75/81 (92%), Positives = 77/81 (95%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKT
Sbjct: 5 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKT 64
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF SAMNKD
Sbjct: 65 HRNQCRACRLAKCFQSAMNKD 85
>gi|195473765|ref|XP_002089163.1| GE25723 [Drosophila yakuba]
gi|194175264|gb|EDW88875.1| GE25723 [Drosophila yakuba]
Length = 691
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 75/81 (92%), Positives = 77/81 (95%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKT
Sbjct: 5 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKT 64
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF SAMNKD
Sbjct: 65 HRNQCRACRLAKCFQSAMNKD 85
>gi|17137164|ref|NP_477140.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|442626233|ref|NP_001260109.1| dissatisfaction, isoform B [Drosophila melanogaster]
gi|7297033|gb|AAF52303.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|440213405|gb|AGB92645.1| dissatisfaction, isoform B [Drosophila melanogaster]
Length = 691
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 75/81 (92%), Positives = 77/81 (95%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKT
Sbjct: 5 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKT 64
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF SAMNKD
Sbjct: 65 HRNQCRACRLAKCFQSAMNKD 85
>gi|194856940|ref|XP_001968860.1| GG25103 [Drosophila erecta]
gi|190660727|gb|EDV57919.1| GG25103 [Drosophila erecta]
Length = 693
Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats.
Identities = 75/81 (92%), Positives = 77/81 (95%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKT
Sbjct: 5 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKT 64
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF SAMNKD
Sbjct: 65 HRNQCRACRLAKCFQSAMNKD 85
>gi|4160012|gb|AAD05225.1| dissatisfaction [Drosophila melanogaster]
Length = 693
Score = 177 bits (449), Expect = 8e-43, Method: Composition-based stats.
Identities = 75/81 (92%), Positives = 77/81 (95%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+DKT
Sbjct: 5 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKT 64
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF SAMNKD
Sbjct: 65 HRNQCRACRLAKCFQSAMNKD 85
>gi|91077386|ref|XP_975255.1| PREDICTED: similar to Dissatisfaction (Dsf) [Tribolium castaneum]
gi|270002823|gb|EEZ99270.1| dissatisfaction [Tribolium castaneum]
Length = 483
Score = 177 bits (448), Expect = 9e-43, Method: Composition-based stats.
Identities = 74/82 (90%), Positives = 79/82 (96%)
Query: 9 LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 68
LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA GD+KG CP+DK
Sbjct: 26 LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKATGDMKGRCPVDK 85
Query: 69 THRNQCRACRLNKCFMSAMNKD 90
THRNQCRACRL+KCF ++MNKD
Sbjct: 86 THRNQCRACRLSKCFQASMNKD 107
>gi|391328748|ref|XP_003738846.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Metaseiulus occidentalis]
Length = 524
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 74/81 (91%), Positives = 76/81 (93%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPC VCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD KG CPIDKT
Sbjct: 26 GDRLLDIPCGVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDFKGKCPIDKT 85
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF ++MNKD
Sbjct: 86 HRNQCRACRLKKCFEASMNKD 106
>gi|195576854|ref|XP_002078288.1| GD23369 [Drosophila simulans]
gi|194190297|gb|EDX03873.1| GD23369 [Drosophila simulans]
Length = 468
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/87 (86%), Positives = 79/87 (90%)
Query: 7 NSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 66
+ GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+
Sbjct: 2 GTAGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPV 61
Query: 67 DKTHRNQCRACRLNKCFMSAMNKDDFK 93
DKTHRNQCRACRL KCF SAMNKD +
Sbjct: 62 DKTHRNQCRACRLAKCFQSAMNKDAVQ 88
>gi|383859045|ref|XP_003705008.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 442
Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 68/81 (83%), Positives = 72/81 (88%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPC VCGDRSSGKHYGIYSCDGCSGFFKRSIH NR Y CKA+G +KG CPIDKT
Sbjct: 19 GDRLLDIPCNVCGDRSSGKHYGIYSCDGCSGFFKRSIHHNREYICKAEGSMKGRCPIDKT 78
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF + MN+D
Sbjct: 79 HRNQCRACRLAKCFEANMNRD 99
>gi|195342846|ref|XP_002038009.1| GM18579 [Drosophila sechellia]
gi|194132859|gb|EDW54427.1| GM18579 [Drosophila sechellia]
Length = 184
Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 75/86 (87%), Positives = 79/86 (91%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 67
+ GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR+YTCKA GDLKG CP+D
Sbjct: 3 TAGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVD 62
Query: 68 KTHRNQCRACRLNKCFMSAMNKDDFK 93
KTHRNQCRACRL KCF SAMNKD +
Sbjct: 63 KTHRNQCRACRLAKCFQSAMNKDAVQ 88
>gi|332025033|gb|EGI65220.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 443
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 69/81 (85%), Positives = 70/81 (86%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDI C VCGDRSSGKHYGIYSCDGCSGFFKRSIH NR Y CKAQG KG CPIDKT
Sbjct: 1 GDRLLDILCDVCGDRSSGKHYGIYSCDGCSGFFKRSIHSNREYICKAQGAKKGRCPIDKT 60
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF + MNKD
Sbjct: 61 HRNQCRACRLAKCFEANMNKD 81
>gi|72099629|ref|XP_789465.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 457
Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 67/82 (81%), Positives = 71/82 (86%)
Query: 9 LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 68
+ DRLLDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSIHR RVY CK QG G CPIDK
Sbjct: 46 ISDRLLDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIHRGRVYVCKQQGKGGGDCPIDK 105
Query: 69 THRNQCRACRLNKCFMSAMNKD 90
THRNQCRACRL KCF + MNKD
Sbjct: 106 THRNQCRACRLRKCFEAQMNKD 127
>gi|340712645|ref|XP_003394866.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 425
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 67/80 (83%), Positives = 70/80 (87%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
DRLLDIPC VCGDRSSGKHYGIYSCDGCSGFFKRSIH NR Y CK QG +KG CPIDKTH
Sbjct: 4 DRLLDIPCLVCGDRSSGKHYGIYSCDGCSGFFKRSIHSNRRYICKVQGAMKGRCPIDKTH 63
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQCRACRL KCF + MN+D
Sbjct: 64 RNQCRACRLAKCFEANMNRD 83
>gi|307203729|gb|EFN82689.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 547
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/79 (84%), Positives = 68/79 (86%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
RLLDI C VCGDRSSGKHYGIYSCDGCSGFFKRSIH NR Y CKAQG KG CPIDKTHR
Sbjct: 1 RLLDILCDVCGDRSSGKHYGIYSCDGCSGFFKRSIHSNREYICKAQGAKKGRCPIDKTHR 60
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KCF + MNKD
Sbjct: 61 NQCRACRLAKCFEANMNKD 79
>gi|357602940|gb|EHJ63582.1| hypothetical protein KGM_12726 [Danaus plexippus]
Length = 142
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/81 (87%), Positives = 75/81 (92%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPC VCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA G++KG CP+DKT
Sbjct: 55 GDRLLDIPCNVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAGGEMKGRCPVDKT 114
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF + MNKD
Sbjct: 115 HRNQCRACRLAKCFQANMNKD 135
>gi|443715570|gb|ELU07483.1| hypothetical protein CAPTEDRAFT_224811 [Capitella teleta]
Length = 360
Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/87 (79%), Positives = 76/87 (87%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G ++ RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIH+NRVYTCKA G+ KG
Sbjct: 5 GMHRAVKYRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHKNRVYTCKASGEKKGR 64
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CP+DKTHRNQCRACRL +CF + MNKD
Sbjct: 65 CPMDKTHRNQCRACRLTQCFSADMNKD 91
>gi|357615819|gb|EHJ69847.1| hypothetical protein KGM_01261 [Danaus plexippus]
Length = 120
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/81 (87%), Positives = 75/81 (92%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GDRLLDIPC VCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA G++KG CP+DKT
Sbjct: 10 GDRLLDIPCNVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAGGEMKGRCPVDKT 69
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF + MNKD
Sbjct: 70 HRNQCRACRLAKCFQANMNKD 90
>gi|291232327|ref|XP_002736110.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 407
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/81 (83%), Positives = 73/81 (90%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
+RLLDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSIHRNRVYTCK QG G+CPIDKT
Sbjct: 41 SERLLDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIHRNRVYTCKQQGKDGGNCPIDKT 100
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KCF + MNKD
Sbjct: 101 HRNQCRACRLKKCFDAQMNKD 121
>gi|321470051|gb|EFX81029.1| dissatisfaction-like protein [Daphnia pulex]
Length = 394
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/93 (77%), Positives = 77/93 (82%), Gaps = 9/93 (9%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDG---------CSGFFKRSIHRNRVYTCKAQGDL 60
GDRLLDIPCKVCGDRSSGKHYGI+SCDG CSGFFKRSIHR RVYTCKAQGDL
Sbjct: 1 GDRLLDIPCKVCGDRSSGKHYGIFSCDGKSWNILTDSCSGFFKRSIHRARVYTCKAQGDL 60
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
K CP+DKTHRNQCRACRL+KCF + MNKD +
Sbjct: 61 KNCCPVDKTHRNQCRACRLHKCFAANMNKDAVQ 93
>gi|410959792|ref|XP_003986483.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Felis
catus]
Length = 422
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 62/82 (75%), Positives = 68/82 (82%), Gaps = 2/82 (2%)
Query: 9 LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 68
LG R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DK
Sbjct: 44 LGSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDK 101
Query: 69 THRNQCRACRLNKCFMSAMNKD 90
THRNQCRACRL KC MNKD
Sbjct: 102 THRNQCRACRLKKCLEVNMNKD 123
>gi|156376476|ref|XP_001630386.1| predicted protein [Nematostella vectensis]
gi|156217406|gb|EDO38323.1| predicted protein [Nematostella vectensis]
Length = 358
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/79 (79%), Positives = 69/79 (87%), Gaps = 1/79 (1%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
RLLDIPCKVCGDRSSGKHYGIY+CDGCSGFFKRSI RNR YTC+A KG+CP+DK HR
Sbjct: 2 RLLDIPCKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNG-KGNCPVDKIHR 60
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCR+CRL KCF +MNKD
Sbjct: 61 NQCRSCRLKKCFDVSMNKD 79
>gi|47077588|dbj|BAD18677.1| unnamed protein product [Homo sapiens]
gi|119568771|gb|EAW48386.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_b
[Homo sapiens]
Length = 422
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 62/83 (74%), Positives = 68/83 (81%), Gaps = 2/83 (2%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 67
S G R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+D
Sbjct: 43 SPGGRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVD 100
Query: 68 KTHRNQCRACRLNKCFMSAMNKD 90
KTHRNQCRACRL KC MNKD
Sbjct: 101 KTHRNQCRACRLKKCLEVNMNKD 123
>gi|16797870|gb|AAL29193.1|AF323680_1 nuclear receptor Amtll [Acropora millepora]
Length = 380
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 63/79 (79%), Positives = 68/79 (86%), Gaps = 1/79 (1%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
RLLDIPCKVCGDRSSGKHYGIY+CDGCSGFFKRSI RNR YTC+A KG+CP+DK HR
Sbjct: 23 RLLDIPCKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNG-KGNCPVDKIHR 81
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCR+CRL KCF MNKD
Sbjct: 82 NQCRSCRLKKCFEVTMNKD 100
>gi|390341307|ref|XP_794533.3| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Strongylocentrotus purpuratus]
Length = 410
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 65/79 (82%), Gaps = 1/79 (1%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK + G CP+DKTHR
Sbjct: 35 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKNRSG-GGPCPVDKTHR 93
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 94 NQCRACRLKKCLQVDMNKD 112
>gi|440904093|gb|ELR54654.1| Nuclear receptor subfamily 2 group E member 1, partial [Bos
grunniens mutus]
Length = 396
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 60/83 (72%), Positives = 68/83 (81%), Gaps = 2/83 (2%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 67
++ R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+D
Sbjct: 17 AISGRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVD 74
Query: 68 KTHRNQCRACRLNKCFMSAMNKD 90
KTHRNQCRACRL KC MNKD
Sbjct: 75 KTHRNQCRACRLKKCLEVNMNKD 97
>gi|307170857|gb|EFN62968.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 226
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/83 (81%), Positives = 70/83 (84%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
G RLLDI C VCGDRSSGKHYGIYSCDGCSGFFKRSIH NR Y CKAQG KG CPIDKT
Sbjct: 51 GHRLLDILCDVCGDRSSGKHYGIYSCDGCSGFFKRSIHSNREYICKAQGAKKGRCPIDKT 110
Query: 70 HRNQCRACRLNKCFMSAMNKDDF 92
HRNQCRACRL KCF + MNKD+
Sbjct: 111 HRNQCRACRLAKCFEANMNKDEV 133
>gi|157278483|ref|NP_001098343.1| nuclear receptor subfamily 2 group E member 1 [Oryzias latipes]
gi|9910805|sp|Q9YGL3.1|NR2E1_ORYLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|4468637|emb|CAB38085.1| tailless [Oryzias latipes]
Length = 396
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/84 (72%), Positives = 68/84 (80%), Gaps = 2/84 (2%)
Query: 7 NSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 66
N R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR+Y CK+ +G CP+
Sbjct: 16 NVKSSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRIYLCKSGS--QGGCPV 73
Query: 67 DKTHRNQCRACRLNKCFMSAMNKD 90
DKTHRNQCRACRL KC MNKD
Sbjct: 74 DKTHRNQCRACRLKKCLEVNMNKD 97
>gi|256080688|ref|XP_002576610.1| nuclear receptor [Schistosoma mansoni]
gi|350645587|emb|CCD59712.1| nuclear receptor, putative [Schistosoma mansoni]
Length = 316
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 73/81 (90%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
RLL+IPC VCGDRS+GKHYG+YSCDGCSGFFKRSIH+NR YTCKA G+LKG C ID+ HR
Sbjct: 7 RLLNIPCGVCGDRSTGKHYGVYSCDGCSGFFKRSIHKNRSYTCKASGNLKGKCTIDRHHR 66
Query: 72 NQCRACRLNKCFMSAMNKDDF 92
N CRACRLNKCF++ MN+++F
Sbjct: 67 NHCRACRLNKCFLAQMNEENF 87
>gi|431838686|gb|ELK00616.1| Nuclear receptor subfamily 2 group E member 1 [Pteropus alecto]
Length = 408
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 33 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 90
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 91 NQCRACRLKKCLEVNMNKD 109
>gi|296198939|ref|XP_002746955.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Callithrix jacchus]
Length = 386
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|410916891|ref|XP_003971920.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Takifugu rubripes]
Length = 385
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGS--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|60828539|gb|AAX36846.1| nuclear receptor subfamily 2 group E member 1 [synthetic
construct]
Length = 386
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|284005564|ref|NP_001164794.1| nuclear receptor subfamily 2 group E member 1 [Oryctolagus
cuniculus]
gi|217038306|gb|ACJ76603.1| nuclear receptor subfamily 2 group E member 1 (predicted)
[Oryctolagus cuniculus]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|397507811|ref|XP_003824377.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
paniscus]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|395534716|ref|XP_003769385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Sarcophilus harrisii]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|348524801|ref|XP_003449911.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Oreochromis niloticus]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGS--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|197215627|gb|ACH53021.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Otolemur garnettii]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|169409578|gb|ACA57920.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callicebus moloch]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|126310401|ref|XP_001368385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Monodelphis domestica]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|73973687|ref|XP_532253.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform
1 [Canis lupus familiaris]
gi|194216311|ref|XP_001502073.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Equus
caballus]
gi|335279315|ref|XP_003353327.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Sus
scrofa]
gi|190402236|gb|ACE77650.1| nuclear receptor subfamily 2, group E, member 1 homolog
(predicted) [Sorex araneus]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|226526921|gb|ACO71279.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Dasypus novemcinctus]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|183637194|gb|ACC64552.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Rhinolophus ferrumequinum]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|4507537|ref|NP_003260.1| nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|281183082|ref|NP_001162457.1| nuclear receptor subfamily 2 group E member 1 [Papio anubis]
gi|388490051|ref|NP_001252896.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|114608752|ref|XP_527467.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
troglodytes]
gi|332259804|ref|XP_003278973.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Nomascus leucogenys]
gi|344264555|ref|XP_003404357.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Loxodonta africana]
gi|403289711|ref|XP_003935987.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Saimiri
boliviensis boliviensis]
gi|426354159|ref|XP_004044535.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Gorilla
gorilla gorilla]
gi|426354161|ref|XP_004044536.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Gorilla gorilla gorilla]
gi|9910804|sp|Q9Y466.1|NR2E1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=hTll
gi|11141399|gb|AAG31945.1|AF220532_1 orphan nuclear receptor [Homo sapiens]
gi|15705907|gb|AAL05871.1|AF411525_1 nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|2292902|emb|CAA73725.1| Tailless protein [Homo sapiens]
gi|20380429|gb|AAH28031.1| Nuclear receptor subfamily 2, group E, member 1 [Homo sapiens]
gi|61358419|gb|AAX41565.1| nuclear receptor subfamily 2 group E member 1 [synthetic
construct]
gi|119568770|gb|EAW48385.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_a
[Homo sapiens]
gi|164449656|gb|ABY56294.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Papio anubis]
gi|166183798|gb|ABY84160.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callithrix jacchus]
gi|216409726|dbj|BAH02300.1| tailes-related receptor [Homo sapiens]
gi|261857884|dbj|BAI45464.1| nuclear receptor subfamily 2, group E, member 1 [synthetic
construct]
gi|325495503|gb|ADZ17357.1| nuclear receptor TLX [Homo sapiens]
gi|355562170|gb|EHH18802.1| hypothetical protein EGK_15469 [Macaca mulatta]
gi|380816050|gb|AFE79899.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|380816052|gb|AFE79900.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|45384018|ref|NP_990501.1| nuclear receptor subfamily 2 group E member 1 [Gallus gallus]
gi|6094488|sp|Q91379.1|NR2E1_CHICK RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|619338|gb|AAB31467.1| nuclear receptor TLX [Gallus gallus]
gi|745066|prf||2015392A nuclear receptor Tlx
Length = 385
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|259013325|ref|NP_001158362.1| tailless [Saccoglossus kowalevskii]
gi|32307797|gb|AAP79295.1| tailless [Saccoglossus kowalevskii]
Length = 361
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 62/79 (78%), Positives = 67/79 (84%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK +G+ G CPIDKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRQYVCKNKGN--GPCPIDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCVQVDMNKD 86
>gi|348524799|ref|XP_003449910.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Oreochromis niloticus]
Length = 396
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 61/84 (72%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
Query: 7 NSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 66
N R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+
Sbjct: 16 NVKSSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGS--QGGCPV 73
Query: 67 DKTHRNQCRACRLNKCFMSAMNKD 90
DKTHRNQCRACRL KC MNKD
Sbjct: 74 DKTHRNQCRACRLKKCLEVNMNKD 97
>gi|410916893|ref|XP_003971921.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Takifugu rubripes]
gi|21538834|gb|AAM61763.1|AF461063_2 nuclear receptor 2E1 [Takifugu rubripes]
Length = 396
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 61/84 (72%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
Query: 7 NSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 66
N R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+
Sbjct: 16 NVKSSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGS--QGGCPV 73
Query: 67 DKTHRNQCRACRLNKCFMSAMNKD 90
DKTHRNQCRACRL KC MNKD
Sbjct: 74 DKTHRNQCRACRLKKCLEVNMNKD 97
>gi|22726205|ref|NP_689415.1| nuclear receptor subfamily 2 group E member 1 [Mus musculus]
gi|6094489|sp|Q64104.1|NR2E1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=mTll
gi|2143507|pir||I53158 orphan nuclear receptor homolog - mouse
gi|998678|gb|AAB34090.1| orphan nuclear receptor homolog [Mus sp.]
gi|21668101|gb|AAM74229.1| nuclear receptor 2E1 [Mus musculus]
gi|34849469|gb|AAH57104.1| Nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
gi|74205430|dbj|BAE21029.1| unnamed protein product [Mus musculus]
gi|148673056|gb|EDL05003.1| nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
Length = 385
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|297678833|ref|XP_002817264.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pongo
abelii]
Length = 385
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|395816268|ref|XP_003781627.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Otolemur garnettii]
Length = 385
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|327261729|ref|XP_003215681.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Anolis carolinensis]
Length = 382
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 7 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 64
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 65 NQCRACRLKKCLEVNMNKD 83
>gi|348560562|ref|XP_003466082.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cavia porcellus]
Length = 385
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|300798463|ref|NP_001179582.1| nuclear receptor subfamily 2 group E member 1 [Bos taurus]
gi|426234591|ref|XP_004011277.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Ovis
aries]
gi|296484166|tpg|DAA26281.1| TPA: nuclear receptor subfamily 2, group E, member 1 [Bos taurus]
Length = 385
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|149046956|gb|EDL99704.1| rCG58537 [Rattus norvegicus]
Length = 385
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|57525699|ref|NP_001003608.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
gi|50418146|gb|AAH77146.1| Nuclear receptor subfamily 2, group E, member 1 [Danio rerio]
gi|116517486|gb|ABJ99095.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
Length = 396
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 61/84 (72%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
Query: 7 NSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 66
N R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+
Sbjct: 16 NVKSSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS--GTQGGCPV 73
Query: 67 DKTHRNQCRACRLNKCFMSAMNKD 90
DKTHRNQCRACRL KC MNKD
Sbjct: 74 DKTHRNQCRACRLKKCLEVNMNKD 97
>gi|47224633|emb|CAG03617.1| unnamed protein product [Tetraodon nigroviridis]
Length = 393
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 3 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGS--QGGCPVDKTHR 60
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 61 NQCRACRLKKCLEVNMNKD 79
>gi|354469258|ref|XP_003497047.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cricetulus griseus]
Length = 518
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 59/78 (75%), Positives = 65/78 (83%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHRN
Sbjct: 144 ILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHRN 201
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC MNKD
Sbjct: 202 QCRACRLKKCLEVNMNKD 219
>gi|301763932|ref|XP_002917384.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2
group E member 1-like [Ailuropoda melanoleuca]
Length = 380
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|351702072|gb|EHB04991.1| Nuclear receptor subfamily 2 group E member 1 [Heterocephalus
glaber]
Length = 445
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 61/84 (72%), Positives = 67/84 (79%), Gaps = 2/84 (2%)
Query: 7 NSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 66
N R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+
Sbjct: 65 NPFRGRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPV 122
Query: 67 DKTHRNQCRACRLNKCFMSAMNKD 90
DKTHRNQCRACRL KC MNKD
Sbjct: 123 DKTHRNQCRACRLKKCLEVNMNKD 146
>gi|449497928|ref|XP_002192943.2| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Taeniopygia guttata]
Length = 532
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 61/82 (74%), Positives = 67/82 (81%), Gaps = 2/82 (2%)
Query: 9 LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 68
L R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DK
Sbjct: 153 LSGRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDK 210
Query: 69 THRNQCRACRLNKCFMSAMNKD 90
THRNQCRACRL KC MNKD
Sbjct: 211 THRNQCRACRLKKCLEVNMNKD 232
>gi|300676833|gb|ADK26709.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
gi|300676928|gb|ADK26800.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
Length = 385
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|147904762|ref|NP_001079280.1| nuclear receptor subfamily 2 group E member 1 [Xenopus laevis]
gi|6094490|sp|P70052.1|NR2E1_XENLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=xTLL
gi|1527203|gb|AAB07732.1| orphan nuclear receptor XTLL [Xenopus laevis]
Length = 386
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRSYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>gi|301615499|ref|XP_002937209.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Xenopus (Silurana) tropicalis]
Length = 405
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/81 (74%), Positives = 66/81 (81%), Gaps = 2/81 (2%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
G R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G C +DKT
Sbjct: 27 GGRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRSYVCKSGN--QGGCLVDKT 84
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KC MNKD
Sbjct: 85 HRNQCRACRLKKCLEVNMNKD 105
>gi|391333770|ref|XP_003741283.1| PREDICTED: protein tailless-like [Metaseiulus occidentalis]
Length = 411
Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats.
Identities = 57/81 (70%), Positives = 64/81 (79%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
G LLDIPCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK +G CP+DKT
Sbjct: 35 GRILLDIPCKVCFDHSSGKHYGIYACDGCAGFFKRSIRRNRHYICKGRGTQANQCPVDKT 94
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KC + MN++
Sbjct: 95 HRNQCRACRLRKCLEAGMNRE 115
>gi|405978560|gb|EKC42940.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 380
Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 58/78 (74%), Positives = 65/78 (83%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L DIPCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK++G +G CP+DKTHRN
Sbjct: 12 LTDIPCKVCQDHSSGKHYGIYACDGCAGFFKRSIRRNRQYICKSRG--QGTCPVDKTHRN 69
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC + MNKD
Sbjct: 70 QCRACRLKKCLEAGMNKD 87
>gi|163954969|ref|NP_001106668.1| nuclear receptor subfamily 2, group E, member 1 [Rattus
norvegicus]
gi|163658507|gb|ABY28383.1| tailless-like protein [Rattus norvegicus]
Length = 385
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/78 (74%), Positives = 64/78 (82%), Gaps = 2/78 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSS KHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSRKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNK 89
NQCRACRL KC MNK
Sbjct: 68 NQCRACRLKKCLEVNMNK 85
>gi|339238405|ref|XP_003380757.1| protein tailless [Trichinella spiralis]
gi|316976296|gb|EFV59616.1| protein tailless [Trichinella spiralis]
Length = 445
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/83 (69%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Query: 9 LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD-LKGHCPID 67
+G LLDIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+G +G C +D
Sbjct: 31 VGRILLDIPCKVCEDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKARGTGQEGSCTVD 90
Query: 68 KTHRNQCRACRLNKCFMSAMNKD 90
KTHRNQCRACRL+KC MNK+
Sbjct: 91 KTHRNQCRACRLSKCLQVGMNKE 113
>gi|443724903|gb|ELU12704.1| hypothetical protein CAPTEDRAFT_226190 [Capitella teleta]
Length = 393
Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats.
Identities = 57/78 (73%), Positives = 64/78 (82%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L+DIPCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK++ +G CP+DKTHRN
Sbjct: 9 LVDIPCKVCSDHSSGKHYGIYACDGCAGFFKRSIRRNRQYICKSRS--QGLCPVDKTHRN 66
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC MNKD
Sbjct: 67 QCRACRLKKCVECGMNKD 84
>gi|344242733|gb|EGV98836.1| Nuclear receptor subfamily 2 group E member 1 [Cricetulus
griseus]
Length = 323
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/75 (76%), Positives = 62/75 (82%), Gaps = 2/75 (2%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHRNQCR
Sbjct: 1 IPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHRNQCR 58
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC MNKD
Sbjct: 59 ACRLKKCLEVNMNKD 73
>gi|380021453|ref|XP_003694579.1| PREDICTED: protein tailless-like [Apis florea]
Length = 400
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/78 (73%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ KG C +DKTHRN
Sbjct: 26 LYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKS--KGGCMVDKTHRN 83
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC + MNKD
Sbjct: 84 QCRACRLAKCIQAGMNKD 101
>gi|260834489|ref|XP_002612243.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
gi|229297618|gb|EEN68252.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
Length = 375
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 57/79 (72%), Positives = 64/79 (81%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI NR YTCK+ CP+DK+ R
Sbjct: 7 RILDIPCKVCGDRSSGKHYGVYTCDGCSGFFKRSIRHNRNYTCKSPS--SAPCPVDKSRR 64
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL +CF MNKD
Sbjct: 65 NQCRACRLQRCFQVNMNKD 83
>gi|340712958|ref|XP_003395019.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 405
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 57/78 (73%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ KG C +DKTHRN
Sbjct: 32 LYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKS--KGGCMVDKTHRN 89
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC MNKD
Sbjct: 90 QCRACRLAKCIQVGMNKD 107
>gi|297522148|gb|ADI44343.1| tailless protein [Clogmia albipunctata]
Length = 437
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 56/78 (71%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L DIPCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y+CK++ G C +DKTHRN
Sbjct: 29 LYDIPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRNRQYSCKSRS--SGQCIVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MN+D
Sbjct: 87 QCRACRLRKCFDVGMNRD 104
>gi|350420018|ref|XP_003492371.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 405
Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats.
Identities = 57/78 (73%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ KG C +DKTHRN
Sbjct: 32 LYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKS--KGGCMVDKTHRN 89
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC MNKD
Sbjct: 90 QCRACRLAKCIHVGMNKD 107
>gi|328782478|ref|XP_001121187.2| PREDICTED: protein tailless [Apis mellifera]
Length = 400
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 57/78 (73%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ KG C +DKTHRN
Sbjct: 26 LYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKS--KGGCMVDKTHRN 83
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC + MNKD
Sbjct: 84 QCRACRLAKCIQAGMNKD 101
>gi|312382715|gb|EFR28076.1| hypothetical protein AND_04416 [Anopheles darlingi]
Length = 542
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 54/78 (69%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L D+PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK++ ++ C +DKTHRN
Sbjct: 70 LYDVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSKAEVA--CVVDKTHRN 127
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 128 QCRACRLKKCFEVGMNKD 145
>gi|118788495|ref|XP_316782.3| AGAP000819-PA [Anopheles gambiae str. PEST]
gi|116126135|gb|EAA12047.4| AGAP000819-PA [Anopheles gambiae str. PEST]
Length = 436
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 54/78 (69%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L D+PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK++ ++ C +DKTHRN
Sbjct: 28 LYDVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSKSEVP--CVVDKTHRN 85
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 86 QCRACRLKKCFEVGMNKD 103
>gi|383856816|ref|XP_003703903.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 397
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 56/78 (71%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ + G C +DKTHRN
Sbjct: 26 LYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSE--GGCMVDKTHRN 83
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC + MNKD
Sbjct: 84 QCRACRLAKCIQAGMNKD 101
>gi|307213614|gb|EFN89000.1| Nuclear receptor subfamily 2 group E member 1 [Harpegnathos
saltator]
Length = 415
Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats.
Identities = 57/81 (70%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
G L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ + G C +DKT
Sbjct: 37 GRILYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSE--GGCMVDKT 94
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KC + MNKD
Sbjct: 95 HRNQCRACRLAKCIQAGMNKD 115
>gi|194765110|ref|XP_001964670.1| GF22927 [Drosophila ananassae]
gi|190614942|gb|EDV30466.1| GF22927 [Drosophila ananassae]
Length = 456
Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>gi|170053585|ref|XP_001862743.1| tailless [Culex quinquefasciatus]
gi|167874052|gb|EDS37435.1| tailless [Culex quinquefasciatus]
Length = 397
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 54/78 (69%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L D+PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK++ + C +DKTHRN
Sbjct: 28 LYDVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSKSETP--CMVDKTHRN 85
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 86 QCRACRLKKCFEVGMNKD 103
>gi|157133704|ref|XP_001662973.1| tailless (tll) [Aedes aegypti]
gi|108881478|gb|EAT45703.1| AAEL003020-PA [Aedes aegypti]
Length = 397
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 54/78 (69%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L D+PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK++ + C +DKTHRN
Sbjct: 28 LYDVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSKSETP--CMVDKTHRN 85
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 86 QCRACRLKKCFEVGMNKD 103
>gi|332021198|gb|EGI61583.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 396
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 56/78 (71%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ + G C +DKTHRN
Sbjct: 26 LYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSE--GGCMVDKTHRN 83
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC + MNKD
Sbjct: 84 QCRACRLAKCIQAGMNKD 101
>gi|195390875|ref|XP_002054093.1| tailless [Drosophila virilis]
gi|194152179|gb|EDW67613.1| tailless [Drosophila virilis]
Length = 450
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>gi|195575179|ref|XP_002105557.1| GD21550 [Drosophila simulans]
gi|194201484|gb|EDX15060.1| GD21550 [Drosophila simulans]
Length = 452
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>gi|17864126|ref|NP_524596.1| tailless [Drosophila melanogaster]
gi|135913|sp|P18102.1|TLL_DROME RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|158604|gb|AAA28936.1| tailless (tll) protein [Drosophila melanogaster]
gi|2440022|gb|AAB71371.1| tailless protein [Drosophila melanogaster]
gi|7301986|gb|AAF57091.1| tailless [Drosophila melanogaster]
gi|66571248|gb|AAY51589.1| IP01133p [Drosophila melanogaster]
gi|220943320|gb|ACL84203.1| tll-PA [synthetic construct]
gi|220953302|gb|ACL89194.1| tll-PA [synthetic construct]
Length = 452
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>gi|6094487|sp|O16845.1|TLL_DROVI RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|2440021|gb|AAB71370.1| tailless protein [Drosophila virilis]
Length = 450
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>gi|270002751|gb|EEZ99198.1| tailless [Tribolium castaneum]
Length = 406
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 59/83 (71%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 67
S R+LDIPCKVCGD SSGKHY I++CDGC+GFFKRSI RNR Y CKA+ + G C ID
Sbjct: 28 SSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDE--GSCIID 85
Query: 68 KTHRNQCRACRLNKCFMSAMNKD 90
KTHRNQCRACRL KC MNKD
Sbjct: 86 KTHRNQCRACRLKKCQNVGMNKD 108
>gi|195505298|ref|XP_002099444.1| GE10907 [Drosophila yakuba]
gi|194185545|gb|EDW99156.1| GE10907 [Drosophila yakuba]
Length = 452
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>gi|125772581|ref|XP_001357592.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|195159108|ref|XP_002020424.1| GL13521 [Drosophila persimilis]
gi|54637324|gb|EAL26726.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|194117193|gb|EDW39236.1| GL13521 [Drosophila persimilis]
Length = 454
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>gi|86515358|ref|NP_001034502.1| tailless [Tribolium castaneum]
gi|8096685|gb|AAF71999.1|AF219117_1 tailless ortholog [Tribolium castaneum]
Length = 406
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 59/83 (71%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 67
S R+LDIPCKVCGD SSGKHY I++CDGC+GFFKRSI RNR Y CKA+ + G C ID
Sbjct: 28 SSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDE--GSCIID 85
Query: 68 KTHRNQCRACRLNKCFMSAMNKD 90
KTHRNQCRACRL KC MNKD
Sbjct: 86 KTHRNQCRACRLKKCQNVGMNKD 108
>gi|194905186|ref|XP_001981146.1| GG11781 [Drosophila erecta]
gi|190655784|gb|EDV53016.1| GG11781 [Drosophila erecta]
Length = 438
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>gi|55140659|gb|AAV41874.1| tailless [Musca domestica]
Length = 442
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>gi|195061143|ref|XP_001995934.1| GH14219 [Drosophila grimshawi]
gi|193891726|gb|EDV90592.1| GH14219 [Drosophila grimshawi]
Length = 445
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>gi|308491334|ref|XP_003107858.1| CRE-NHR-67 protein [Caenorhabditis remanei]
gi|308249805|gb|EFO93757.1| CRE-NHR-67 protein [Caenorhabditis remanei]
Length = 422
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/79 (69%), Positives = 64/79 (81%), Gaps = 1/79 (1%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL-KGHCPIDKTHR 71
LLD+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK +G+ +G C +DKTHR
Sbjct: 16 LLDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGNFDEGRCIVDKTHR 75
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 76 NQCRACRLRKCLEIGMNKD 94
>gi|242013777|ref|XP_002427577.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
gi|212511992|gb|EEB14839.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
Length = 403
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 56/81 (69%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
G L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI R+R Y CKA+ + G C +DKT
Sbjct: 8 GRILYDIPCKVCQDHSSGKHYGIFACDGCAGFFKRSIRRSRQYLCKAKSE--GSCTVDKT 65
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KC + MNKD
Sbjct: 66 HRNQCRACRLKKCVEAGMNKD 86
>gi|307185619|gb|EFN71557.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 373
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 56/78 (71%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ + G C +DKTHRN
Sbjct: 1 LYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSE--GGCMVDKTHRN 58
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC + MNKD
Sbjct: 59 QCRACRLAKCIQAGMNKD 76
>gi|358254993|dbj|GAA56686.1| nuclear hormone receptor family member nhr-67 [Clonorchis sinensis]
Length = 1106
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 57/86 (66%), Positives = 63/86 (73%), Gaps = 7/86 (8%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCK---AQG----DLKGHCP 65
LLDIPC+VC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK A G G C
Sbjct: 18 LLDIPCRVCKDHSSGKHYGIYACDGCAGFFKRSIRRNRQYACKNRTANGTKLSTAVGGCR 77
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKDD 91
+DK+HRNQCRACRL KC MN+DD
Sbjct: 78 VDKSHRNQCRACRLKKCLEVGMNRDD 103
>gi|156536461|gb|ABU80385.1| tailless, partial [Drosophila littoralis]
Length = 389
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 22 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 79
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 80 QCRACRLRKCFEVGMNKD 97
>gi|57231806|gb|AAW47616.1| tailless [Drosophila americana]
Length = 389
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 22 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 79
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 80 QCRACRLRKCFEVGMNKD 97
>gi|195113207|ref|XP_002001159.1| GI22125 [Drosophila mojavensis]
gi|193917753|gb|EDW16620.1| GI22125 [Drosophila mojavensis]
Length = 450
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>gi|156536463|gb|ABU80386.1| tailless, partial [Drosophila montana]
Length = 389
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 22 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 79
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 80 QCRACRLRKCFEVGMNKD 97
>gi|57231804|gb|AAW47615.1| tailless [Drosophila virilis]
gi|57231808|gb|AAW47617.1| tailless [Drosophila americana]
gi|57231812|gb|AAW47619.1| tailless [Drosophila americana]
gi|57231814|gb|AAW47620.1| tailless [Drosophila americana]
gi|57231816|gb|AAW47621.1| tailless [Drosophila americana]
gi|57231818|gb|AAW47622.1| tailless [Drosophila americana]
gi|57231820|gb|AAW47623.1| tailless [Drosophila americana]
Length = 389
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 22 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 79
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 80 QCRACRLRKCFEVGMNKD 97
>gi|268536318|ref|XP_002633294.1| C. briggsae CBR-NHR-67 protein [Caenorhabditis briggsae]
Length = 426
Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats.
Identities = 54/79 (68%), Positives = 64/79 (81%), Gaps = 1/79 (1%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL-KGHCPIDKTHR 71
L+D+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK +G+ +G C +DKTHR
Sbjct: 16 LVDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGNFDEGRCIVDKTHR 75
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 76 NQCRACRLRKCLEIGMNKD 94
>gi|195452812|ref|XP_002073511.1| GK14159 [Drosophila willistoni]
gi|194169596|gb|EDW84497.1| GK14159 [Drosophila willistoni]
Length = 457
Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFDVGMNKD 104
>gi|57231810|gb|AAW47618.1| tailless [Drosophila americana]
Length = 389
Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 22 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 79
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 80 QCRACRLRKCFEVGMNKD 97
>gi|321478244|gb|EFX89201.1| tailless-like protein [Daphnia pulex]
Length = 337
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 56/81 (69%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
G L DIPC+VC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ + G C +DKT
Sbjct: 2 GRILYDIPCRVCQDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSE--GACLVDKT 59
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQCRACRL KC MNKD
Sbjct: 60 HRNQCRACRLRKCVEVGMNKD 80
>gi|57231822|gb|AAW47624.1| tailless [Drosophila ezoana]
Length = 389
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 22 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 79
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 80 QCRACRLRKCFEVGMNKD 97
>gi|341880402|gb|EGT36337.1| hypothetical protein CAEBREN_17159 [Caenorhabditis brenneri]
Length = 418
Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats.
Identities = 55/79 (69%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL-KGHCPIDKTHR 71
LLD+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK +G +G C +DKTHR
Sbjct: 15 LLDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGGFDEGRCVVDKTHR 74
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 75 NQCRACRLRKCLEIGMNKD 93
>gi|193575673|ref|XP_001945915.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 396
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 65/78 (83%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L DIPCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK++ + G CP+DKTHRN
Sbjct: 21 LYDIPCKVCKDFSSGKHYGIYACDGCAGFFKRSIRRNRQYICKSKSE--GACPVDKTHRN 78
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC +S MNKD
Sbjct: 79 QCRACRLRKCMLSGMNKD 96
>gi|341894285|gb|EGT50220.1| CBN-NHR-67 protein [Caenorhabditis brenneri]
Length = 412
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 55/79 (69%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL-KGHCPIDKTHR 71
LLD+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK +G +G C +DKTHR
Sbjct: 9 LLDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGGFDEGRCVVDKTHR 68
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 69 NQCRACRLRKCLEIGMNKD 87
>gi|8248247|gb|AAF74116.1|AF225975_1 Tc-tailless [Tribolium castaneum]
Length = 302
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/83 (71%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 67
S R+LDIPCKVCGD SSGKHY I++CDGC+GFFKRSI RNR Y CKA+ + G C ID
Sbjct: 28 SSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDE--GSCIID 85
Query: 68 KTHRNQCRACRLNKCFMSAMNKD 90
KTHRNQCRACRL KC MNKD
Sbjct: 86 KTHRNQCRACRLKKCQNVGMNKD 108
>gi|121484050|gb|ABM54351.1| NR2E1 [Pan paniscus]
gi|122892562|gb|ABM67332.1| NR2E1 [Hylobates klossii]
Length = 77
Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 1 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 58
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 59 NQCRACRLKKCLEVNMNKD 77
>gi|405978561|gb|EKC42941.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 388
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 64/78 (82%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L D+PCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK++ K CP+DKTHRN
Sbjct: 12 LTDVPCKVCQDHSSGKHYGIYACDGCAGFFKRSIRRNRQYVCKSRNQDK--CPVDKTHRN 69
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRLNKC S MN+D
Sbjct: 70 QCRACRLNKCVKSGMNRD 87
>gi|402585073|gb|EJW79013.1| tailless, partial [Wuchereria bancrofti]
Length = 312
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/82 (67%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ-GDLKGHCPIDK 68
G LLD+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK + G +G C +DK
Sbjct: 3 GRILLDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNRGGGEEGKCLVDK 62
Query: 69 THRNQCRACRLNKCFMSAMNKD 90
THRNQCRACRL KC MNK+
Sbjct: 63 THRNQCRACRLTKCLEIGMNKE 84
>gi|170589101|ref|XP_001899312.1| nuclear receptor NHR-67 [Brugia malayi]
gi|158593525|gb|EDP32120.1| nuclear receptor NHR-67, putative [Brugia malayi]
Length = 328
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 57/92 (61%), Positives = 69/92 (75%), Gaps = 2/92 (2%)
Query: 1 MNVGTDNSLGDR-LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ-G 58
M++ +L R LLD+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK + G
Sbjct: 8 MHISKKRTLPGRILLDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNRGG 67
Query: 59 DLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
+G C +DKTHRNQCRACRL KC MNK+
Sbjct: 68 GEEGKCLVDKTHRNQCRACRLTKCLEIGMNKE 99
>gi|313246784|emb|CBY35651.1| unnamed protein product [Oikopleura dioica]
Length = 160
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 66/85 (77%), Gaps = 2/85 (2%)
Query: 9 LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 68
+G R+L++PC+VCGD SSGKHYG+Y+CDGCSGFFKRSI + R Y CK G ++G CPIDK
Sbjct: 6 IGGRILEVPCRVCGDNSSGKHYGVYACDGCSGFFKRSIRKGRSYVCK--GIIQGQCPIDK 63
Query: 69 THRNQCRACRLNKCFMSAMNKDDFK 93
HRNQCRACRL C MN+D +
Sbjct: 64 AHRNQCRACRLEHCLKVRMNRDAVQ 88
>gi|17541682|ref|NP_502094.1| Protein NHR-67 [Caenorhabditis elegans]
gi|17369901|sp|Q9XVV3.1|NHR67_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-67
gi|3874154|emb|CAA97428.1| Protein NHR-67 [Caenorhabditis elegans]
Length = 416
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/79 (67%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD-LKGHCPIDKTHR 71
LLD+ C+VC D SSGKHY I+SCDGC+GFFKRSI R+R Y CK +G +G C +DKTHR
Sbjct: 16 LLDVDCRVCEDHSSGKHYSIFSCDGCAGFFKRSIRRHRQYVCKNKGSPSEGQCKVDKTHR 75
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 76 NQCRACRLRKCLEIGMNKD 94
>gi|28396034|gb|AAO39180.1| nuclear receptor NHR-67 [Caenorhabditis elegans]
Length = 409
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 53/79 (67%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD-LKGHCPIDKTHR 71
LLD+ C+VC D SSGKHY I+SCDGC+GFFKRSI R+R Y CK +G +G C +DKTHR
Sbjct: 9 LLDVDCRVCEDHSSGKHYSIFSCDGCAGFFKRSIRRHRQYVCKNKGSPSEGQCKVDKTHR 68
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 69 NQCRACRLRKCLEIGMNKD 87
>gi|324520018|gb|ADY47539.1| Nuclear hormone receptor family member nhr-67, partial [Ascaris
suum]
Length = 313
Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats.
Identities = 54/79 (68%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ-GDLKGHCPIDKTHR 71
LLD+PC+VC D SSGKHYGI+SCDGC+GFFKRSI R+R Y CK + G +G C +DKTHR
Sbjct: 18 LLDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNRGGGEEGKCLVDKTHR 77
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNK+
Sbjct: 78 NQCRACRLTKCLEIGMNKE 96
>gi|449267650|gb|EMC78568.1| Photoreceptor-specific nuclear receptor [Columba livia]
Length = 406
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 35 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGLCPVDKAHRNQCQAC 91
Query: 78 RLNKCFMSAMNKD 90
RL KC + MNKD
Sbjct: 92 RLKKCLQAGMNKD 104
>gi|224062203|ref|XP_002192483.1| PREDICTED: photoreceptor-specific nuclear receptor [Taeniopygia
guttata]
Length = 404
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 35 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGLCPVDKAHRNQCQAC 91
Query: 78 RLNKCFMSAMNKD 90
RL KC + MNKD
Sbjct: 92 RLKKCLQAGMNKD 104
>gi|313237532|emb|CBY12680.1| unnamed protein product [Oikopleura dioica]
Length = 155
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 65/85 (76%), Gaps = 2/85 (2%)
Query: 9 LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 68
+ R+L++PC+VCGD SSGKHYG+Y+CDGCSGFFKRSI + R Y CK G ++G CPIDK
Sbjct: 1 MNRRILEVPCRVCGDNSSGKHYGVYACDGCSGFFKRSIRKGRSYVCK--GIIQGQCPIDK 58
Query: 69 THRNQCRACRLNKCFMSAMNKDDFK 93
HRNQCRACRL C MN+D +
Sbjct: 59 AHRNQCRACRLEHCLKVRMNRDAVQ 83
>gi|45382987|ref|NP_989925.1| photoreceptor-specific nuclear receptor [Gallus gallus]
gi|15777197|gb|AAL05940.1| photoreceptor-specific nuclear receptor [Gallus gallus]
Length = 406
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 35 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGLCPVDKAHRNQCQAC 91
Query: 78 RLNKCFMSAMNKD 90
RL KC + MNKD
Sbjct: 92 RLKKCLQAGMNKD 104
>gi|256082368|ref|XP_002577429.1| zinc finger protein [Schistosoma mansoni]
gi|353232857|emb|CCD80213.1| putative zinc finger protein [Schistosoma mansoni]
Length = 408
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 63/84 (75%), Gaps = 6/84 (7%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH------CPI 66
LLDIPC VC D SSGKHYGIY+CDGC+GFFKRSI RNR YTCK++G G C +
Sbjct: 6 LLDIPCHVCEDHSSGKHYGIYACDGCAGFFKRSIRRNRQYTCKSRGTTIGSKSGIVVCRV 65
Query: 67 DKTHRNQCRACRLNKCFMSAMNKD 90
DK+HRNQCRACRL KC MNKD
Sbjct: 66 DKSHRNQCRACRLTKCLEVGMNKD 89
>gi|59709814|gb|AAW88537.1| DSF [Schistosoma mansoni]
Length = 70
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 62/70 (88%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGDRS+GKHYG+YSCDGCSGFFKRSIH+NR YTCKA G+LKG C ID+ HRN CRAC
Sbjct: 1 CGVCGDRSTGKHYGVYSCDGCSGFFKRSIHKNRSYTCKASGNLKGKCTIDRHHRNHCRAC 60
Query: 78 RLNKCFMSAM 87
RLNKCF++ M
Sbjct: 61 RLNKCFLAQM 70
>gi|126272955|ref|XP_001371421.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Monodelphis domestica]
Length = 405
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 27 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---SGTCPVDKAHRNQCQAC 83
Query: 78 RLNKCFMSAMNKD 90
RL KC S MNKD
Sbjct: 84 RLRKCLQSGMNKD 96
>gi|297592502|gb|ADI47122.1| tailless [Polyrhachis vicina]
Length = 419
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/78 (71%), Positives = 63/78 (80%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L DIPCKVC D SSGKHYGI++CDGC+GFFKRSI RNR Y CKA+ + G C +DKTHRN
Sbjct: 26 LYDIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSE--GGCMVDKTHRN 83
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC + MNKD
Sbjct: 84 QCRACRLAKCIQAGMNKD 101
>gi|410912674|ref|XP_003969814.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Takifugu
rubripes]
Length = 431
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/96 (58%), Positives = 68/96 (70%), Gaps = 10/96 (10%)
Query: 2 NVGTDNSLGD-----RLLD--IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTC 54
+VGTD+S G + L + CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C
Sbjct: 22 SVGTDDSRGKSPAPGKALSPALVCKVCGDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRC 81
Query: 55 KAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
+A G CP+DK HRNQC+ACRL KC + MNKD
Sbjct: 82 QAG---TGMCPVDKAHRNQCQACRLKKCLQAGMNKD 114
>gi|357627327|gb|EHJ77063.1| putative Orphan nuclear receptor NR2E1 [Danaus plexippus]
Length = 390
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 50/78 (64%), Positives = 59/78 (75%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L D+PC VC D SSGKHYG+++CDGC+GFFKRS+ R+R Y CKA+ G C +DK HRN
Sbjct: 14 LYDVPCAVCRDHSSGKHYGVFACDGCAGFFKRSVRRDRRYACKARN--SGACLVDKAHRN 71
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KC MNKD
Sbjct: 72 QCRACRLAKCLDVGMNKD 89
>gi|327285350|ref|XP_003227397.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Anolis
carolinensis]
Length = 418
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 35 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGMCPVDKAHRNQCQAC 91
Query: 78 RLNKCFMSAMNKD 90
RL KC + MNKD
Sbjct: 92 RLKKCLQAGMNKD 104
>gi|374670309|gb|AEZ56119.1| nuclear receptor TLX-1 [Schmidtea mediterranea]
Length = 373
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 66/87 (75%), Gaps = 4/87 (4%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCK---AQGD-LKGH 63
S G LLD+PCKVC D SSGKHYGIY+CDGC+GFFKRSI +R+Y CK +GD G
Sbjct: 4 STGRILLDVPCKVCQDHSSGKHYGIYACDGCAGFFKRSIRHSRLYICKNKSIKGDSWIGI 63
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
C IDKTHRNQCRACRL KC S MNK+
Sbjct: 64 CKIDKTHRNQCRACRLQKCVDSGMNKE 90
>gi|432861654|ref|XP_004069672.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 416
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 50/76 (65%), Positives = 58/76 (76%), Gaps = 3/76 (3%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
D+ CKVC D SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC
Sbjct: 39 DVLCKVCSDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAG---TGRCPVDKAHRNQC 95
Query: 75 RACRLNKCFMSAMNKD 90
+ACRL KC S MNKD
Sbjct: 96 QACRLKKCLQSGMNKD 111
>gi|432850556|ref|XP_004066809.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 431
Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 47 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAG---TGMCPVDKAHRNQCQAC 103
Query: 78 RLNKCFMSAMNKD 90
RL KC + MNKD
Sbjct: 104 RLKKCLQAGMNKD 116
>gi|348505631|ref|XP_003440364.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 421
Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats.
Identities = 53/87 (60%), Positives = 61/87 (70%), Gaps = 6/87 (6%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G S G LL CKVC D SSGKHYGI++C+GCSGFFKRS+ R VY C+A G
Sbjct: 32 GLRKSFGQGLL---CKVCSDSSSGKHYGIFTCNGCSGFFKRSVRRRLVYRCQAG---NGR 85
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CP+DK HRNQC+ACRL KC + MNKD
Sbjct: 86 CPVDKAHRNQCQACRLKKCLQAGMNKD 112
>gi|431893708|gb|ELK03529.1| Photoreceptor-specific nuclear receptor [Pteropus alecto]
Length = 417
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 33 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 89
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 90 ACRLKKCLQAGMNQD 104
>gi|260802126|ref|XP_002595944.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
gi|229281196|gb|EEN51956.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
Length = 369
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/82 (64%), Positives = 60/82 (73%), Gaps = 4/82 (4%)
Query: 10 GDRLLD-IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 68
G RLL CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G C IDK
Sbjct: 1 GKRLLSHTACKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGMCTIDK 57
Query: 69 THRNQCRACRLNKCFMSAMNKD 90
HRNQC+ACRL KC + MNKD
Sbjct: 58 AHRNQCQACRLKKCLAAGMNKD 79
>gi|149692277|ref|XP_001495004.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Equus
caballus]
Length = 480
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 106 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 162
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 163 ACRLKKCLQAGMNQD 177
>gi|348533763|ref|XP_003454374.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 426
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 37 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAG---TGMCPVDKAHRNQCQAC 93
Query: 78 RLNKCFMSAMNKD 90
RL KC + MNKD
Sbjct: 94 RLKKCLQAGMNKD 106
>gi|403276151|ref|XP_003929774.1| PREDICTED: photoreceptor-specific nuclear receptor [Saimiri
boliviensis boliviensis]
Length = 552
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 187 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 243
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 244 ACRLKKCLQAGMNQD 258
>gi|441617194|ref|XP_004088427.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Nomascus leucogenys]
Length = 562
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 197 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 253
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 254 ACRLKKCLQAGMNQD 268
>gi|395822830|ref|XP_003784710.1| PREDICTED: photoreceptor-specific nuclear receptor [Otolemur
garnettii]
Length = 693
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 328 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 384
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 385 ACRLKKCLQAGMNQD 399
>gi|402874751|ref|XP_003901191.1| PREDICTED: photoreceptor-specific nuclear receptor [Papio anubis]
Length = 445
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 80 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 136
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 137 ACRLKKCLQAGMNQD 151
>gi|147900594|ref|NP_001090633.1| nuclear receptor subfamily 2, group E, member 3 [Xenopus (Silurana)
tropicalis]
gi|115392210|gb|ABI96907.1| nuclear hormone receptor Nr2e3 [Xenopus (Silurana) tropicalis]
Length = 404
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 47/73 (64%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C+VCGD SSGKHYGI++C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 32 CRVCGDSSSGKHYGIFACNGCSGFFKRSVRRKLIYRCQAG---TGLCPVDKAHRNQCQAC 88
Query: 78 RLNKCFMSAMNKD 90
RL KC + MNKD
Sbjct: 89 RLKKCLQTGMNKD 101
>gi|109081780|ref|XP_001089693.1| PREDICTED: photoreceptor-specific nuclear receptor [Macaca mulatta]
Length = 448
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 97 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 153
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 154 ACRLKKCLQAGMNQD 168
>gi|348583723|ref|XP_003477622.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Cavia
porcellus]
Length = 603
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 246 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRGLIYRCQVG---MGMCPVDKAHRNQCQ 302
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 303 ACRLKKCLQAGMNQD 317
>gi|269315847|ref|NP_001161372.1| photoreceptor-specific nuclear receptor [Bos taurus]
gi|296483590|tpg|DAA25705.1| TPA: photoreceptor-specific nuclear receptor [Bos taurus]
Length = 411
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|263506139|sp|Q9TTF0.2|NR2E3_BOVIN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
Length = 411
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|354473494|ref|XP_003498970.1| PREDICTED: photoreceptor-specific nuclear receptor [Cricetulus
griseus]
Length = 403
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 46 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 102
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 103 ACRLKKCLQAGMNQD 117
>gi|7305323|ref|NP_038736.1| photoreceptor-specific nuclear receptor [Mus musculus]
gi|10720145|sp|Q9QXZ7.1|NR2E3_MOUSE RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|6651227|gb|AAF22228.1|AF148129_1 nuclear receptor [Mus musculus]
gi|7770295|gb|AAF69682.1|AF204053_1 photoreceptor specific nuclear receptor [Mus musculus]
gi|17028410|gb|AAH17521.1| Nuclear receptor subfamily 2, group E, member 3 [Mus musculus]
gi|26343545|dbj|BAC35429.1| unnamed protein product [Mus musculus]
gi|148694043|gb|EDL25990.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_c [Mus
musculus]
Length = 395
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 38 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 94
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 95 ACRLKKCLQAGMNQD 109
>gi|351714332|gb|EHB17251.1| Photoreceptor-specific nuclear receptor [Heterocephalus glaber]
Length = 351
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRGLIYRCQVG---VGMCPVDKAHRNQCQ 93
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|7657395|ref|NP_055064.1| photoreceptor-specific nuclear receptor isoform b [Homo sapiens]
gi|8928275|sp|Q9Y5X4.1|NR2E3_HUMAN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|4726075|gb|AAD28301.1|AF121129_1 photoreceptor-specific nuclear receptor [Homo sapiens]
gi|7329721|emb|CAB82769.1| photoreceptor-specific nuclear receptor [Homo sapiens]
gi|119598282|gb|EAW77876.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a
[Homo sapiens]
gi|216409728|dbj|BAH02301.1| photoreceptor-specific nuclear receptor [Homo sapiens]
Length = 410
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 45 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 101
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 102 ACRLKKCLQAGMNQD 116
>gi|432111648|gb|ELK34747.1| Photoreceptor-specific nuclear receptor [Myotis davidii]
Length = 404
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 30 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQVGA---GMCPVDKAHRNQCQ 86
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC MN+D
Sbjct: 87 ACRLKKCLQEGMNQD 101
>gi|426379592|ref|XP_004056476.1| PREDICTED: photoreceptor-specific nuclear receptor [Gorilla gorilla
gorilla]
Length = 402
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|296213607|ref|XP_002753344.1| PREDICTED: photoreceptor-specific nuclear receptor [Callithrix
jacchus]
Length = 368
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|410960926|ref|XP_003987038.1| PREDICTED: photoreceptor-specific nuclear receptor [Felis catus]
Length = 411
Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC MN+D
Sbjct: 94 ACRLKKCLQEGMNQD 108
>gi|392350113|ref|XP_003750575.1| PREDICTED: photoreceptor-specific nuclear receptor-like, partial
[Rattus norvegicus]
Length = 293
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 38 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 94
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 95 ACRLKKCLQAGMNQD 109
>gi|344248427|gb|EGW04531.1| Photoreceptor-specific nuclear receptor [Cricetulus griseus]
Length = 395
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 38 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 94
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 95 ACRLKKCLQAGMNQD 109
>gi|7706515|ref|NP_057430.1| photoreceptor-specific nuclear receptor isoform a [Homo sapiens]
gi|6651225|gb|AAF22227.1|AF148128_1 nuclear receptor [Homo sapiens]
gi|119598283|gb|EAW77877.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b
[Homo sapiens]
gi|325495505|gb|ADZ17358.1| photoreceptor cell-specific nuclear receptor variant 1 [Homo
sapiens]
Length = 367
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 45 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 101
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 102 ACRLKKCLQAGMNQD 116
>gi|260828845|ref|XP_002609373.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
gi|229294729|gb|EEN65383.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
Length = 336
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/78 (62%), Positives = 56/78 (71%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPC++CGDRSSGKHYG+YSCDGC GFFKRSI RN Y CK G C +D RNQC+
Sbjct: 1 IPCRICGDRSSGKHYGVYSCDGCRGFFKRSIRRNLAYICKENGS----CVVDVARRNQCQ 56
Query: 76 ACRLNKCFMSAMNKDDFK 93
ACR KC + MNKD F+
Sbjct: 57 ACRFKKCLDAQMNKDGFR 74
>gi|170031169|ref|XP_001843459.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167869235|gb|EDS32618.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 697
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 47/55 (85%), Positives = 51/55 (92%)
Query: 36 DGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
+ CSGFFKRSIHRNRVYTCKA G+LKG CP+DKTHRNQCRACRL+KCF SAMNKD
Sbjct: 173 ESCSGFFKRSIHRNRVYTCKAAGELKGRCPVDKTHRNQCRACRLSKCFQSAMNKD 227
>gi|297697018|ref|XP_002825669.1| PREDICTED: photoreceptor-specific nuclear receptor [Pongo abelii]
Length = 614
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 249 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 305
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 306 ACRLKKCLQAGMNQD 320
>gi|291225515|ref|XP_002732745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 405
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 50/79 (63%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R DIPC+VCGDRSSGKHYG+YSCDGC GFFKRS+ RN Y CK + C +D T R
Sbjct: 17 RKPDIPCRVCGDRSSGKHYGVYSCDGCRGFFKRSVRRNLAYVCKENNN----CIVDVTRR 72
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQC+ACR KC MNKD
Sbjct: 73 NQCQACRFKKCLEVRMNKD 91
>gi|440897500|gb|ELR49170.1| Photoreceptor-specific nuclear receptor, partial [Bos grunniens
mutus]
Length = 427
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 53 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 109
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 110 ACRLKKCLQAGMNQD 124
>gi|426233871|ref|XP_004010932.1| PREDICTED: photoreceptor-specific nuclear receptor [Ovis aries]
Length = 516
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 142 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 198
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 199 ACRLKKCLQAGMNQD 213
>gi|6681852|gb|AAF15392.2|AF107729_1 paraneoplastic retinopathy associated protein De [Bos taurus]
Length = 427
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 53 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 109
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 110 ACRLKKCLQAGMNQD 124
>gi|397495508|ref|XP_003818594.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
paniscus]
Length = 402
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|114657918|ref|XP_001175025.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 3 [Pan
troglodytes]
Length = 402
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>gi|55925261|ref|NP_001007369.1| photoreceptor-specific nuclear receptor [Danio rerio]
gi|55250124|gb|AAH85568.1| Zgc:103631 [Danio rerio]
gi|182889208|gb|AAI64789.1| Zgc:103631 protein [Danio rerio]
Length = 419
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 48/73 (65%), Positives = 56/73 (76%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVC D SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 39 CKVCSDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAG---TGMCPVDKAHRNQCQAC 95
Query: 78 RLNKCFMSAMNKD 90
RL KC + MNKD
Sbjct: 96 RLKKCLQAGMNKD 108
>gi|296803356|gb|ADH51741.1| putative tailless protein [Episyrphus balteatus]
Length = 418
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI RNR Y CK+Q K C +DK HRN
Sbjct: 29 LYHLPCKVCLDNSSGKHYGIYACDGCAGFFKRSIRRNRQYVCKSQK--KTLCVVDKAHRN 86
Query: 73 QCRACRLNKCFMSAMNK 89
QCRACRL KCF + MNK
Sbjct: 87 QCRACRLKKCFDAGMNK 103
>gi|259013303|ref|NP_001158447.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
gi|196475499|gb|ACG76360.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
Length = 439
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/89 (57%), Positives = 62/89 (69%), Gaps = 4/89 (4%)
Query: 3 VGTDNSLGDRLL-DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
V + NS R+ + C VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A
Sbjct: 43 VSSHNSSSKRVTPGMACLVCGDVSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---T 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
G C +DK HRNQC+ACRL KC + MNKD
Sbjct: 100 GLCTVDKAHRNQCQACRLKKCMQTGMNKD 128
>gi|390357069|ref|XP_003728922.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 585
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/81 (59%), Positives = 58/81 (71%), Gaps = 4/81 (4%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
G+R LDIPC+VCGDRSSG+HYG+YSCDGC GFFKRS+ RN Y C+ G C ++
Sbjct: 188 GERGLDIPCQVCGDRSSGRHYGVYSCDGCRGFFKRSVRRNLAYVCRD----GGRCIVNVP 243
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
RNQC+ACR KC MN+D
Sbjct: 244 RRNQCQACRYRKCLAVNMNRD 264
>gi|241707738|ref|XP_002403220.1| zinc finger, C4 type, putative [Ixodes scapularis]
gi|215505031|gb|EEC14525.1| zinc finger, C4 type, putative [Ixodes scapularis]
Length = 299
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/95 (57%), Positives = 64/95 (67%), Gaps = 12/95 (12%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDG--------CSGF----FKRSIHRNRVYTCK 55
++G LLDIPCKVC D SSGKHYGI++CDG C F +RSI RNR Y CK
Sbjct: 12 AVGRILLDIPCKVCLDHSSGKHYGIFACDGAGPEYDCACPFFPTLWVQRSIRRNRQYVCK 71
Query: 56 AQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
A+G CP+DKTHRNQCRACRL KC + MNK+
Sbjct: 72 ARGAAANGCPVDKTHRNQCRACRLRKCLEAGMNKE 106
>gi|332023687|gb|EGI63911.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 730
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 49/80 (61%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 151 RSLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHR 207
Query: 72 NQCRACRLNKCFMSAMNKDD 91
NQC+ACRL KC MNKDD
Sbjct: 208 NQCQACRLKKCMQMGMNKDD 227
>gi|340709633|ref|XP_003393408.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
terrestris]
gi|350422440|ref|XP_003493165.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
impatiens]
Length = 540
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/79 (60%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 142 RSLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHR 198
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQC+ACRL KC MNKD
Sbjct: 199 NQCQACRLKKCMQMGMNKD 217
>gi|383861940|ref|XP_003706442.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Megachile
rotundata]
Length = 537
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/79 (60%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 139 RSLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHR 195
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQC+ACRL KC MNKD
Sbjct: 196 NQCQACRLKKCMQMGMNKD 214
>gi|293349263|ref|XP_002727107.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Rattus
norvegicus]
Length = 397
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 38 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 94
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 95 ACRLKKCLQAGMNQD 109
>gi|328792134|ref|XP_396999.4| PREDICTED: photoreceptor-specific nuclear receptor [Apis mellifera]
gi|380028656|ref|XP_003698008.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Apis
florea]
Length = 538
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/79 (60%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 140 RSLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHR 196
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQC+ACRL KC MNKD
Sbjct: 197 NQCQACRLKKCMQMGMNKD 215
>gi|307199534|gb|EFN80135.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 538
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/79 (60%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 140 RSLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHR 196
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQC+ACRL KC MNKD
Sbjct: 197 NQCQACRLKKCMQMGMNKD 215
>gi|345487763|ref|XP_001606227.2| PREDICTED: photoreceptor-specific nuclear receptor [Nasonia
vitripennis]
Length = 551
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 48/79 (60%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 149 RSLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHR 205
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQC+ACRL KC MNKD
Sbjct: 206 NQCQACRLKKCMQMGMNKD 224
>gi|291241519|ref|XP_002740657.1| PREDICTED: Orphan nuclear receptor NR6A1, putative-like
[Saccoglossus kowalevskii]
Length = 404
Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats.
Identities = 48/74 (64%), Positives = 55/74 (74%), Gaps = 4/74 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+PC+VCGD+S GKHYG+Y CDGCS FFKRSI RN VYTC KG+C IDK RN C
Sbjct: 9 VPCQVCGDKSYGKHYGVYCCDGCSCFFKRSIRRNMVYTCIG----KGNCTIDKARRNWCP 64
Query: 76 ACRLNKCFMSAMNK 89
CRLNKCF +MN+
Sbjct: 65 YCRLNKCFAVSMNR 78
>gi|313212695|emb|CBY36633.1| unnamed protein product [Oikopleura dioica]
Length = 133
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 60/76 (78%), Gaps = 2/76 (2%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 67
++ R+L+ PC+VCGD SSGKHYG+Y+CDGCSGFFKRSI + R Y CK G ++G CPID
Sbjct: 53 AISGRILEFPCRVCGDNSSGKHYGVYACDGCSGFFKRSIRKGRSYVCK--GIIQGQCPID 110
Query: 68 KTHRNQCRACRLNKCF 83
K HRNQCRACRL C
Sbjct: 111 KAHRNQCRACRLEHCL 126
>gi|242004528|ref|XP_002423135.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506081|gb|EEB10397.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 467
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/79 (59%), Positives = 57/79 (72%), Gaps = 3/79 (3%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
++L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 54 KILGLSCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHR 110
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQC+ACRL KC MNKD
Sbjct: 111 NQCQACRLKKCLQMGMNKD 129
>gi|410904505|ref|XP_003965732.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Takifugu rubripes]
Length = 404
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/87 (52%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G D GD++ ++ C VCGDRSSGKHYG ++C+GC FFKRS+ RN YTC+ D
Sbjct: 40 GNDALSGDKIPNVDCMVCGDRSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRD---- 95
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 96 CPIDQHHRNQCQYCRLKKCLKVGMRRE 122
>gi|156389440|ref|XP_001634999.1| predicted protein [Nematostella vectensis]
gi|156222088|gb|EDO42936.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 55/75 (73%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGDR+SGKHYG+ +CDGC GFFKRS+ RN Y CK + D CPID RNQC+
Sbjct: 2 VQCRVCGDRASGKHYGVMTCDGCRGFFKRSVRRNLAYQCKEKND----CPIDVARRNQCQ 57
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KCF MN+D
Sbjct: 58 ACRLRKCFEMNMNRD 72
>gi|313239642|emb|CBY14538.1| unnamed protein product [Oikopleura dioica]
Length = 85
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 58/72 (80%), Gaps = 2/72 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+L+ PC+VCGD SSGKHYG+Y+CDGCSGFFKRSI + R Y CK G ++G CPIDK HR
Sbjct: 9 RILEFPCRVCGDNSSGKHYGVYACDGCSGFFKRSIRKGRSYVCK--GIIQGQCPIDKAHR 66
Query: 72 NQCRACRLNKCF 83
NQCRACRL C
Sbjct: 67 NQCRACRLEHCL 78
>gi|444726663|gb|ELW67187.1| Usher syndrome type-1C protein-binding protein 1 [Tupaia chinensis]
Length = 767
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/76 (57%), Positives = 55/76 (72%), Gaps = 4/76 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQC+
Sbjct: 644 VDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQCQ 699
Query: 76 ACRLNKCFMSAMNKDD 91
CRL KCF M K+D
Sbjct: 700 YCRLKKCFRVGMRKED 715
>gi|339245569|ref|XP_003378710.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
gi|316972367|gb|EFV56045.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
Length = 547
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/73 (64%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DKTHRNQC+AC
Sbjct: 129 CSVCGDASSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGSCLVDKTHRNQCQAC 185
Query: 78 RLNKCFMSAMNKD 90
RL KC MNKD
Sbjct: 186 RLKKCIEMGMNKD 198
>gi|348556980|ref|XP_003464298.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Cavia porcellus]
Length = 396
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 7/90 (7%)
Query: 4 GTDNSLGDRL---LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
+D LGD L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D
Sbjct: 39 ASDAELGDEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKNFFKRSIRRNISYTCRSNRD- 97
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 98 ---CQIDQHHRNQCQYCRLKKCFRVGMRKE 124
>gi|443685615|gb|ELT89169.1| hypothetical protein CAPTEDRAFT_171557 [Capitella teleta]
Length = 437
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DKTHRNQC+
Sbjct: 64 LTCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGLCVVDKTHRNQCQ 120
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC MNKD
Sbjct: 121 ACRLKKCLQMGMNKD 135
>gi|348511313|ref|XP_003443189.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oreochromis niloticus]
Length = 404
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G D GD++ ++ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+ D
Sbjct: 40 GNDALSGDKIPNVDCMVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRD---- 95
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 96 CPIDQHHRNQCQYCRLKKCLKVGMRRE 122
>gi|432910588|ref|XP_004078428.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oryzias latipes]
Length = 404
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G D GD++ ++ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+ D
Sbjct: 40 GNDALSGDKIPNVDCMVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRD---- 95
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 96 CPIDQHHRNQCQYCRLKKCLKVGMRRE 122
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 47/73 (64%), Positives = 53/73 (72%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C+VCGDRSSGKHYG+++CDGC GFFKRSI RN Y CK G C +D RNQC+AC
Sbjct: 1 CRVCGDRSSGKHYGVFTCDGCRGFFKRSIRRNLTYHCKEL----GKCVVDVARRNQCQAC 56
Query: 78 RLNKCFMSAMNKD 90
RL KCF MNKD
Sbjct: 57 RLKKCFEVQMNKD 69
>gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2 group F member 5 [Danio rerio]
gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 5;
AltName: Full=Steroid receptor homolog SVP 46
gi|296421|emb|CAA49781.1| spv 46 [Danio rerio]
gi|190339654|gb|AAI62999.1| Nr2f5 protein [Danio rerio]
gi|190340229|gb|AAI62963.1| Nuclear receptor subfamily 2, group F, member 5 [Danio rerio]
Length = 403
Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G D GD++ ++ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+ D
Sbjct: 40 GNDALSGDKIPNVDCMVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRGNRD---- 95
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 96 CPIDQHHRNQCQYCRLKKCLKVGMRRE 122
>gi|270011038|gb|EFA07486.1| hormone receptor 51 [Tribolium castaneum]
Length = 470
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 46/73 (63%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQC+AC
Sbjct: 83 CVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQCQAC 139
Query: 78 RLNKCFMSAMNKD 90
RL KC MNKD
Sbjct: 140 RLKKCLAMGMNKD 152
>gi|328707384|ref|XP_001948870.2| PREDICTED: photoreceptor-specific nuclear receptor-like
[Acyrthosiphon pisum]
Length = 510
Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats.
Identities = 47/79 (59%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
+ L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HR
Sbjct: 99 KTLGLTCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGSCVVDKAHR 155
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQC+ACRL KC MNKD
Sbjct: 156 NQCQACRLKKCLNMGMNKD 174
>gi|158253732|gb|AAI54181.1| Zgc:103631 protein [Danio rerio]
Length = 344
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 56/73 (76%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVC D SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G CP+DK HRNQC+AC
Sbjct: 39 CKVCSDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAG---TGMCPVDKAHRNQCQAC 95
Query: 78 RLNKCFMSAMNKD 90
RL KC + MNKD
Sbjct: 96 RLKKCLQAGMNKD 108
>gi|321465568|gb|EFX76568.1| hypothetical protein DAPPUDRAFT_106791 [Daphnia pulex]
Length = 310
Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 55/75 (73%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A GHC IDK HRNQC+
Sbjct: 22 LTCLVCGDSSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---SGHCVIDKAHRNQCQ 78
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC MNKD
Sbjct: 79 ACRLKKCLQMGMNKD 93
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 7/90 (7%)
Query: 4 GTDNSLGDRL---LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
G+D GD L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D
Sbjct: 377 GSDPEPGDEDKPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD- 435
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 436 ---CQIDQHHRNQCQYCRLKKCFRVGMRKE 462
>gi|221330285|ref|NP_611032.2| hormone receptor 51 [Drosophila melanogaster]
gi|220902230|gb|AAM68536.2| hormone receptor 51 [Drosophila melanogaster]
gi|291490761|gb|ADE06696.1| RT06950p1 [Drosophila melanogaster]
Length = 582
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 107 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHRNQ 163
Query: 74 CRACRLNKCFMSAMNKD 90
C+ACRL KC MNKD
Sbjct: 164 CQACRLKKCLQMGMNKD 180
>gi|405974187|gb|EKC38851.1| Photoreceptor-specific nuclear receptor [Crassostrea gigas]
Length = 438
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQC+
Sbjct: 73 LTCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGMCLVDKAHRNQCQ 129
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC MNKD
Sbjct: 130 ACRLKKCLQMGMNKD 144
>gi|324510528|gb|ADY44403.1| Photoreceptor-specific nuclear receptor [Ascaris suum]
Length = 471
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQC+
Sbjct: 137 LSCAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGSCVVDKAHRNQCQ 193
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC MNKD
Sbjct: 194 ACRLKKCLNKGMNKD 208
>gi|296486096|tpg|DAA28209.1| TPA: nuclear receptor subfamily 2, group F, member 6-like [Bos
taurus]
Length = 383
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 25 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 80
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 81 CQYCRLKKCFRVGMRKE 97
>gi|358412829|ref|XP_002704762.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
gi|359066798|ref|XP_002688591.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
Length = 412
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 54 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 109
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 110 CQYCRLKKCFRVGMRKE 126
>gi|345322078|ref|XP_001509616.2| PREDICTED: retinoic acid receptor RXR-like [Ornithorhynchus
anatinus]
Length = 203
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 62/87 (71%), Gaps = 6/87 (6%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G +L L+ CKVCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+A G
Sbjct: 88 GPGKALSPVLM---CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAG---TGM 141
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CP+DK HRNQC+ACRL KC + MNKD
Sbjct: 142 CPVDKAHRNQCQACRLRKCLQAGMNKD 168
>gi|311249241|ref|XP_003123537.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Sus
scrofa]
Length = 414
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 56 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 111
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 112 CQYCRLKKCFRVGMRKE 128
>gi|195426545|ref|XP_002061388.1| GK20892 [Drosophila willistoni]
gi|194157473|gb|EDW72374.1| GK20892 [Drosophila willistoni]
Length = 573
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 97 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQ 153
Query: 74 CRACRLNKCFMSAMNKD 90
C+ACRL KC MNKD
Sbjct: 154 CQACRLKKCLQMGMNKD 170
>gi|194384988|dbj|BAG60906.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 25 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 80
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 81 CQYCRLKKCFRVGMRKE 97
>gi|149041874|gb|EDL95715.1| rCG58152 [Rattus norvegicus]
Length = 240
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 57/76 (75%), Gaps = 3/76 (3%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+AC
Sbjct: 40 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQAC 96
Query: 78 RLNKCFMSAMNKDDFK 93
RL KC + MN+D +
Sbjct: 97 RLKKCLQAGMNQDAVQ 112
>gi|73986038|ref|XP_852412.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform 1
[Canis lupus familiaris]
Length = 416
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 57 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 112
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 113 CQYCRLKKCFRVGMRKE 129
>gi|156374224|ref|XP_001629708.1| predicted protein [Nematostella vectensis]
gi|156216714|gb|EDO37645.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
++ + + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC+A D CPID+ H
Sbjct: 21 EKNVQVECAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRASRD----CPIDQHH 76
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 77 RNQCQYCRLKKCLKVGMRRE 96
>gi|194754966|ref|XP_001959763.1| GF13031 [Drosophila ananassae]
gi|190621061|gb|EDV36585.1| GF13031 [Drosophila ananassae]
Length = 552
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 76 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQ 132
Query: 74 CRACRLNKCFMSAMNKD 90
C+ACRL KC MNKD
Sbjct: 133 CQACRLKKCLQMGMNKD 149
>gi|114675979|ref|XP_001173294.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pan
troglodytes]
gi|410209646|gb|JAA02042.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410259260|gb|JAA17596.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410296550|gb|JAA26875.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410337621|gb|JAA37757.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
Length = 404
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|395847866|ref|XP_003796585.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Otolemur
garnettii]
Length = 410
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|20070199|ref|NP_005225.2| nuclear receptor subfamily 2 group F member 6 [Homo sapiens]
gi|23503053|sp|P10588.2|NR2F6_HUMAN RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=V-erbA-related protein 2; Short=EAR-2
gi|119604986|gb|EAW84580.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127798390|gb|AAH02669.3| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799092|gb|AAH63018.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799948|gb|AAH84544.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|189054615|dbj|BAG37465.1| unnamed protein product [Homo sapiens]
gi|208966888|dbj|BAG73458.1| nuclear receptor subfamily 2, group F, member 6 [synthetic
construct]
gi|325495513|gb|ADZ17362.1| nuclear receptor V-erbA-related [Homo sapiens]
Length = 404
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|71894981|ref|NP_001026026.1| hepatocyte nuclear factor 4-alpha [Gallus gallus]
gi|57116106|gb|AAW33562.1| hepatic nuclear factor 4alpha [Gallus gallus]
Length = 454
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ T NS+G L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNTSNSIGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FN 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|74145119|dbj|BAE27426.1| unnamed protein product [Mus musculus]
Length = 390
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>gi|344282642|ref|XP_003413082.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Loxodonta
africana]
Length = 408
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>gi|302563813|ref|NP_001181753.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 377
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 25 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 80
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 81 CQYCRLKKCFRVGMRKE 97
>gi|20806167|ref|NP_620813.1| nuclear receptor subfamily 2 group F member 6 [Rattus norvegicus]
gi|10720384|sp|O09017.1|NR2F6_RAT RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUPg; AltName: Full=Ovalbumin upstream
promoter gamma nuclear receptor; AltName:
Full=V-erbA-related protein 2; Short=EAR-2
gi|2197123|gb|AAB61296.1| ovalbumin upstream promoter gamma nuclear receptor rCOUPg [Rattus
norvegicus]
Length = 390
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKR+I RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>gi|326931833|ref|XP_003212028.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Meleagris
gallopavo]
Length = 455
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ T NS+G L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNTSNSIGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FN 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|426228806|ref|XP_004008487.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2
group F member 6, partial [Ovis aries]
Length = 382
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 16 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 71
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 72 CQYCRLKKCFRVGMRKE 88
>gi|387541468|gb|AFJ71361.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 404
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|170586218|ref|XP_001897876.1| photoreceptor-specific nuclear receptor [Brugia malayi]
gi|158594271|gb|EDP32855.1| photoreceptor-specific nuclear receptor, putative [Brugia malayi]
Length = 486
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQC+
Sbjct: 153 LSCAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGSCIVDKAHRNQCQ 209
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC MNKD
Sbjct: 210 ACRLKKCLSKGMNKD 224
>gi|297276426|ref|XP_001114305.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
isoform 1 [Macaca mulatta]
Length = 404
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|296233223|ref|XP_002761927.1| PREDICTED: nuclear receptor subfamily 2 group F member 6
[Callithrix jacchus]
Length = 386
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 34 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 89
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 90 CQYCRLKKCFRVGMRKE 106
>gi|112807199|ref|NP_034280.2| nuclear receptor subfamily 2 group F member 6 [Mus musculus]
gi|341941192|sp|P43136.2|NR2F6_MOUSE RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUP transcription factor 3;
Short=COUP-TF3; AltName: Full=V-erbA-related protein 2;
Short=EAR-2
gi|14198162|gb|AAH08138.1| Nuclear receptor subfamily 2, group F, member 6 [Mus musculus]
gi|74143003|dbj|BAE42523.1| unnamed protein product [Mus musculus]
gi|74203464|dbj|BAE20887.1| unnamed protein product [Mus musculus]
gi|148696964|gb|EDL28911.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b [Mus
musculus]
Length = 390
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>gi|431921971|gb|ELK19144.1| Nuclear receptor subfamily 2 group F member 6 [Pteropus alecto]
Length = 481
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 54 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 109
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 110 CQYCRLKKCFRVGMRKE 126
>gi|189238719|ref|XP_970391.2| PREDICTED: similar to Hormone receptor 51 CG16801-PA [Tribolium
castaneum]
Length = 393
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/74 (62%), Positives = 54/74 (72%), Gaps = 3/74 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQC+AC
Sbjct: 92 CVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQCQAC 148
Query: 78 RLNKCFMSAMNKDD 91
RL KC MNKD+
Sbjct: 149 RLKKCLAMGMNKDE 162
>gi|157115449|ref|XP_001658211.1| expressed protein (HR51) [Aedes aegypti]
gi|108876909|gb|EAT41134.1| AAEL007190-PA [Aedes aegypti]
Length = 594
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 56/77 (72%), Gaps = 3/77 (3%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQ
Sbjct: 123 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGNCTVDKAHRNQ 179
Query: 74 CRACRLNKCFMSAMNKD 90
C+ACRL KC MNKD
Sbjct: 180 CQACRLKKCLNMGMNKD 196
>gi|270008090|gb|EFA04538.1| hormone receptor 83 [Tribolium castaneum]
Length = 1502
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 52/73 (71%), Gaps = 3/73 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+PC+VCGDRS GKHYG+Y CDGCS FFKRS+ RN +YTC + +G C +DK RN C
Sbjct: 1228 VPCRVCGDRSFGKHYGVYCCDGCSCFFKRSVRRNIIYTCISG---EGRCIVDKARRNWCP 1284
Query: 76 ACRLNKCFMSAMN 88
CRL +CF MN
Sbjct: 1285 YCRLQRCFSVQMN 1297
>gi|390331720|ref|XP_780706.3| PREDICTED: photoreceptor-specific nuclear receptor-like
[Strongylocentrotus purpuratus]
Length = 443
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD SSGKHYGIY+C+GCSGFFKRS+ R VY C+A G C +DK HRNQC+
Sbjct: 32 LTCTVCGDISSGKHYGIYACNGCSGFFKRSVRRKLVYRCQAG---TGCCLVDKAHRNQCQ 88
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MNKD
Sbjct: 89 ACRLKKCLDAGMNKD 103
>gi|156376474|ref|XP_001630385.1| predicted protein [Nematostella vectensis]
gi|156217405|gb|EDO38322.1| predicted protein [Nematostella vectensis]
Length = 340
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/79 (58%), Positives = 56/79 (70%), Gaps = 4/79 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D+ +I CKVCGD SSG+HYG+Y+CDGCSGFF RS+ R+ VYTCK G C +DK
Sbjct: 2 DKKQEILCKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVYTCKGNGG----CTVDKKR 57
Query: 71 RNQCRACRLNKCFMSAMNK 89
RNQC+ACR KC MN+
Sbjct: 58 RNQCQACRFKKCLEVKMNR 76
>gi|344279999|ref|XP_003411773.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor
4-alpha-like [Loxodonta africana]
Length = 464
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ T NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNTPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|349970344|dbj|GAA35793.1| photoreceptor-specific nuclear receptor [Clonorchis sinensis]
Length = 756
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/74 (63%), Positives = 54/74 (72%), Gaps = 3/74 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C IDK HRNQC+AC
Sbjct: 270 CSVCGDVSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGLCSIDKAHRNQCQAC 326
Query: 78 RLNKCFMSAMNKDD 91
RL KC MNK+D
Sbjct: 327 RLKKCLRMGMNKND 340
>gi|195402633|ref|XP_002059909.1| GJ14974 [Drosophila virilis]
gi|194140775|gb|EDW57246.1| GJ14974 [Drosophila virilis]
Length = 577
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 95 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQ 151
Query: 74 CRACRLNKCFMSAMNKD 90
C+ACRL KC MNKD
Sbjct: 152 CQACRLKKCLQMGMNKD 168
>gi|72148318|ref|XP_795547.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 483
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/74 (63%), Positives = 52/74 (70%), Gaps = 4/74 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+PCKVCGD+S GKHYG+Y CDGCS FFKRSI RN YTC KG+C +DK RN C
Sbjct: 9 VPCKVCGDKSYGKHYGVYCCDGCSCFFKRSIRRNMRYTCIG----KGNCLVDKARRNWCP 64
Query: 76 ACRLNKCFMSAMNK 89
CRL KCF MNK
Sbjct: 65 YCRLKKCFAVNMNK 78
>gi|328787581|ref|XP_624042.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Apis
mellifera]
Length = 394
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 56/85 (65%), Gaps = 8/85 (9%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
DNS G+ L CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C
Sbjct: 3 DNSRGESL----CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCI 54
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
+D + RNQC+ACR KC M +D
Sbjct: 55 VDVSRRNQCQACRFTKCLQVNMKRD 79
>gi|327271760|ref|XP_003220655.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Anolis
carolinensis]
Length = 465
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NS+G +L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNASNSIGASVL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FN 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|17568335|ref|NP_508547.1| Protein FAX-1, isoform a [Caenorhabditis elegans]
gi|5881165|gb|AAD55066.1|AF176087_1 nuclear hormone receptor FAX-1 [Caenorhabditis elegans]
gi|351057992|emb|CCD64596.1| Protein FAX-1, isoform a [Caenorhabditis elegans]
Length = 419
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQC+AC
Sbjct: 102 CAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGNCVVDKAHRNQCQAC 158
Query: 78 RLNKCFMSAMNKD 90
RL KC MNKD
Sbjct: 159 RLKKCLNKGMNKD 171
>gi|312078554|ref|XP_003141789.1| hypothetical protein LOAG_06205 [Loa loa]
gi|307763047|gb|EFO22281.1| hypothetical protein LOAG_06205 [Loa loa]
Length = 493
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQC+
Sbjct: 160 LSCAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGSCIVDKAHRNQCQ 216
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC MNKD
Sbjct: 217 ACRLKKCLNKGMNKD 231
>gi|195486253|ref|XP_002091427.1| GE13645 [Drosophila yakuba]
gi|194177528|gb|EDW91139.1| GE13645 [Drosophila yakuba]
Length = 654
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 185 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHRNQ 241
Query: 74 CRACRLNKCFMSAMNKD 90
C+ACRL KC MNKD
Sbjct: 242 CQACRLKKCLQMGMNKD 258
>gi|281353714|gb|EFB29298.1| hypothetical protein PANDA_011329 [Ailuropoda melanoleuca]
Length = 391
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 5/75 (6%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKR++ R C+ G CP+DK HRNQC+
Sbjct: 20 LQCRVCGDSSSGKHYGIYACNGCSGFFKRTVRRR--LRCQVGA---GMCPVDKAHRNQCQ 74
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC MN+D
Sbjct: 75 ACRLKKCLQEGMNQD 89
>gi|321461128|gb|EFX72163.1| hypothetical protein DAPPUDRAFT_59378 [Daphnia pulex]
Length = 384
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N VYTC+ HC +DK RNQCR C
Sbjct: 61 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHVYTCR----FNRHCVVDKDKRNQCRYC 116
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 117 RLGKCFKAGMKKE 129
>gi|453232782|ref|NP_001263953.1| Protein FAX-1, isoform b [Caenorhabditis elegans]
gi|403411176|emb|CCM09421.1| Protein FAX-1, isoform b [Caenorhabditis elegans]
Length = 390
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQC+AC
Sbjct: 102 CAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGNCVVDKAHRNQCQAC 158
Query: 78 RLNKCFMSAMNKD 90
RL KC MNKD
Sbjct: 159 RLKKCLNKGMNKD 171
>gi|391330852|ref|XP_003739866.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Metaseiulus occidentalis]
Length = 467
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/75 (62%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C IDK HRNQC+
Sbjct: 56 LTCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVIDKAHRNQCQ 112
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC MNKD
Sbjct: 113 ACRLKKCLQMGMNKD 127
>gi|31065|emb|CAA31282.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKR+I RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|432861275|ref|XP_004069587.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oryzias latipes]
Length = 610
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 61/90 (67%), Gaps = 5/90 (5%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
GTD SL L++ C VCGD++SG+HYG SC+GC GFFKRSI +N +YTC+ G+
Sbjct: 107 GTDQSLAKPLVEY-CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLMYTCRGSGE---- 161
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 162 CAINKLHRNRCQYCRLQRCIALGMKQDSVQ 191
>gi|216409732|dbj|BAH02303.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
Length = 401
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKR+I RN YTC++ D C ID+ HRNQ
Sbjct: 50 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRD----CQIDQHHRNQ 105
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 106 CQYCRLKKCFRVGMRKE 122
>gi|308511839|ref|XP_003118102.1| CRE-FAX-1 protein [Caenorhabditis remanei]
gi|308238748|gb|EFO82700.1| CRE-FAX-1 protein [Caenorhabditis remanei]
Length = 470
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 46/76 (60%), Positives = 55/76 (72%), Gaps = 3/76 (3%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQC+AC
Sbjct: 102 CAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGNCIVDKAHRNQCQAC 158
Query: 78 RLNKCFMSAMNKDDFK 93
RL KC MNKD +
Sbjct: 159 RLKKCLNKGMNKDGIR 174
>gi|327271762|ref|XP_003220656.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Anolis
carolinensis]
Length = 475
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NS+G +L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNASNSIGASVL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FN 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|221124181|ref|XP_002154441.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Hydra
magnipapillata]
Length = 438
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 57/75 (76%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+PC+VCGD+SSG+HYG+++CDGC GFFKR++ RN ++ CK G+ C +D RNQC+
Sbjct: 22 LPCRVCGDKSSGRHYGVFTCDGCRGFFKRAVRRNLLFLCKENGN----CQVDVARRNQCQ 77
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC+ MN+D
Sbjct: 78 ACRLRKCYDVHMNRD 92
>gi|482930|emb|CAA54097.1| EAR2 [Mus musculus]
Length = 390
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKR+I RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>gi|397494017|ref|XP_003817891.1| PREDICTED: nuclear receptor subfamily 2 group F member 6, partial
[Pan paniscus]
Length = 429
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 22 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 77
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 78 CQYCRLKKCFRVGMRKE 94
>gi|354493669|ref|XP_003508962.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Cricetulus griseus]
gi|344253293|gb|EGW09397.1| Hepatocyte nuclear factor 4-alpha [Cricetulus griseus]
Length = 464
Score = 105 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|409758|gb|AAA37532.1| transcription factor [Mus musculus]
Length = 389
Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKR+I RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>gi|354493667|ref|XP_003508961.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Cricetulus griseus]
Length = 474
Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|216409714|dbj|BAH02294.1| hepatocyte nuclear factor 4, alpha [Homo sapiens]
Length = 465
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|380027402|ref|XP_003697414.1| PREDICTED: COUP transcription factor 2-like [Apis florea]
Length = 393
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 56/85 (65%), Gaps = 8/85 (9%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
DNS G+ L CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C
Sbjct: 3 DNSRGESL----CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCI 54
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
+D + RNQC+ACR KC M +D
Sbjct: 55 VDVSRRNQCQACRFTKCLQVNMKRD 79
>gi|31077207|ref|NP_849180.1| hepatocyte nuclear factor 4-alpha isoform a [Homo sapiens]
gi|325495531|gb|ADZ17371.1| hepatocyte nuclear factor 4 4 alpha variant 1 [Homo sapiens]
Length = 464
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|52345586|ref|NP_001004841.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
gi|49250456|gb|AAH74651.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+ + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC++ D C ID+ HRNQ
Sbjct: 50 IQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRSNRD----CQIDQHHRNQ 105
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 106 CQYCRLKKCFRVGMRKE 122
>gi|148233922|ref|NP_001080181.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus laevis]
gi|33416678|gb|AAH56043.1| Nr2f6 protein [Xenopus laevis]
Length = 389
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+ + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC++ D C ID+ HRNQ
Sbjct: 50 IQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRSNRD----CQIDQHHRNQ 105
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 106 CQYCRLKKCFRVGMRKE 122
>gi|46575916|ref|NP_032287.2| hepatocyte nuclear factor 4-alpha [Mus musculus]
gi|148886625|sp|P49698.2|HNF4A_MOUSE RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
gi|24657895|gb|AAH39220.1| Hepatic nuclear factor 4, alpha [Mus musculus]
gi|62635464|gb|AAX90602.1| hepatic nuclear factor 4 alpha [Mus musculus]
Length = 474
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|56372|emb|CAA40412.1| transcription factor HNF-4 [Rattus rattus]
Length = 455
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|227511|prf||1705219A hepatocyte nuclear factor 4
Length = 455
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|575253|emb|CAA54248.1| hepatocyte nuclear factor 4 [Homo sapiens]
Length = 465
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|397511215|ref|XP_003825974.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Pan
paniscus]
Length = 464
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|390462622|ref|XP_002747621.2| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor 4-alpha
isoform 2 [Callithrix jacchus]
Length = 517
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 90 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 142
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 143 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 171
>gi|71725341|ref|NP_001025174.1| hepatocyte nuclear factor 4-alpha isoform e [Homo sapiens]
gi|50980769|gb|AAT91237.1| hepatocyte nuclear factor 4 alpha, transcript variant 7 [Homo
sapiens]
Length = 442
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 25 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 77
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 78 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 106
>gi|31077205|ref|NP_000448.3| hepatocyte nuclear factor 4-alpha isoform b [Homo sapiens]
gi|148886624|sp|P41235.3|HNF4A_HUMAN RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
gi|119596331|gb|EAW75925.1| hepatocyte nuclear factor 4, alpha, isoform CRA_e [Homo sapiens]
gi|147883854|gb|ABQ52204.1| hepatocyte nuclear factor 4, alpha [Homo sapiens]
gi|208966450|dbj|BAG73239.1| hepatocyte nuclear factor 4, alpha [synthetic construct]
gi|325495549|gb|ADZ17380.1| hepatocyte nuclear factor 4 4 alpha variant 2 [Homo sapiens]
Length = 474
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|1843522|gb|AAB48082.1| hepatocyte nuclear factor 4-alpha [Homo sapiens]
Length = 516
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 89 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 141
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 142 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 170
>gi|403290713|ref|XP_003936452.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Saimiri
boliviensis boliviensis]
Length = 464
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|1595752|emb|CAA61133.1| Hepatocyte nuclear factor 4A [Homo sapiens]
Length = 455
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|47214501|emb|CAG00925.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G D GD++ ++ C VCGDRSSGKHYG ++C+GC FFKRS+ RN YTC+ D
Sbjct: 40 GNDALSGDKIPNVDCMVCGDRSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRD---- 95
Query: 64 CPIDKTHRNQCRACRLNK 81
CPID+ HRNQC+ CRL K
Sbjct: 96 CPIDQHHRNQCQYCRLKK 113
>gi|397511213|ref|XP_003825973.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Pan
paniscus]
Length = 474
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG+ +C+GC FFKRS+ RN YTC+A K +C ID+ HRNQC+
Sbjct: 164 IDCGVCGDKSSGKHYGVNTCEGCKSFFKRSVRRNLQYTCRA----KRNCSIDQHHRNQCQ 219
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC + M KD
Sbjct: 220 HCRLKKCLKAGMRKD 234
>gi|195119854|ref|XP_002004444.1| GI19610 [Drosophila mojavensis]
gi|193909512|gb|EDW08379.1| GI19610 [Drosophila mojavensis]
Length = 589
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 146 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHRNQ 202
Query: 74 CRACRLNKCFMSAMNKD 90
C+ACRL KC MNKD
Sbjct: 203 CQACRLKKCLQMGMNKD 219
>gi|148674390|gb|EDL06337.1| hepatic nuclear factor 4, alpha, isoform CRA_b [Mus musculus]
Length = 465
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|1217961|emb|CAA89989.1| hepatocyte nuclear factor 4 alpha (HNF4alpha4) [Homo sapiens]
gi|1588510|prf||2208436A hepatocyte nuclear factor 4:ISOTYPE=alpha
Length = 504
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 77 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 129
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 130 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 158
>gi|71725339|ref|NP_787110.2| hepatocyte nuclear factor 4-alpha isoform d [Homo sapiens]
gi|50980771|gb|AAT91238.1| hepatocyte nuclear factor 4 alpha, transcript variant 8 [Homo
sapiens]
gi|119596327|gb|EAW75921.1| hepatocyte nuclear factor 4, alpha, isoform CRA_a [Homo sapiens]
gi|325495547|gb|ADZ17379.1| hepatocyte nuclear factor 4 4 alpha variant 4 [Homo sapiens]
Length = 452
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 25 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 77
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 78 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 106
>gi|62752029|ref|NP_001015557.1| hepatocyte nuclear factor 4-alpha [Bos taurus]
gi|32454391|gb|AAP82997.1| hepatocyte nuclear factor 4alpha [Bos taurus]
gi|296481081|tpg|DAA23196.1| TPA: hepatocyte nuclear factor 4, alpha [Bos taurus]
Length = 455
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|47216397|emb|CAG01948.1| unnamed protein product [Tetraodon nigroviridis]
Length = 426
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 6/89 (6%)
Query: 4 GTDNSLGD--RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
G+D GD + + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC++ +
Sbjct: 37 GSDMEAGDEDKACVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRSNRE-- 94
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 --CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|403290711|ref|XP_003936451.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Saimiri
boliviensis boliviensis]
Length = 474
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|148886626|sp|P22449.3|HNF4A_RAT RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1; AltName: Full=Transcription factor 14;
Short=TCF-14; AltName: Full=Transcription factor HNF-4
Length = 474
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|148674389|gb|EDL06336.1| hepatic nuclear factor 4, alpha, isoform CRA_a [Mus musculus]
Length = 452
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 25 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 77
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 78 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 106
>gi|1595756|emb|CAA61134.1| Hepatocyte nuclear factor 4B [Homo sapiens]
Length = 465
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|326937432|ref|NP_001192082.1| hepatocyte nuclear factor 4-alpha [Ovis aries]
gi|325305983|gb|ADZ11096.1| hepatocyte nuclear factor 4 alpha [Ovis aries]
Length = 455
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|126302915|ref|XP_001369784.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Monodelphis
domestica]
Length = 464
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 7/90 (7%)
Query: 1 MNVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
+N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 46 VNLNAPNSLGVGPL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----F 98
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 99 SRQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|126302917|ref|XP_001369818.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Monodelphis
domestica]
Length = 474
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 7/90 (7%)
Query: 1 MNVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
+N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 46 VNLNAPNSLGVGPL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----F 98
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 99 SRQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|220773|dbj|BAA01411.1| hepatocyte nuclear factor 4 [Rattus norvegicus]
Length = 465
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|9453875|dbj|BAB03286.1| hepatocyte nuclear factor 4 [Tamias sibiricus]
Length = 455
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLAAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|400153986|ref|NP_071516.2| hepatocyte nuclear factor 4-alpha isoform 1 [Rattus norvegicus]
gi|149042998|gb|EDL96572.1| hepatocyte nuclear factor 4, alpha, isoform CRA_a [Rattus
norvegicus]
Length = 474
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|360045180|emb|CCD82728.1| photoreceptor-specific nuclear receptor related [Schistosoma
mansoni]
Length = 567
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 46/73 (63%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C IDK HRNQC+AC
Sbjct: 231 CIVCGDISSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---NGLCIIDKAHRNQCQAC 287
Query: 78 RLNKCFMSAMNKD 90
R+ KC MNKD
Sbjct: 288 RMKKCIRMGMNKD 300
>gi|363730987|ref|XP_425924.3| PREDICTED: hepatocyte nuclear factor 4-gamma [Gallus gallus]
Length = 512
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI +N VYTC+ C +DK RNQCR C
Sbjct: 117 CAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYTCR----FSRQCVVDKDKRNQCRYC 172
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 173 RLKKCFRAGMKKE 185
>gi|195155258|ref|XP_002018522.1| GL17752 [Drosophila persimilis]
gi|194114318|gb|EDW36361.1| GL17752 [Drosophila persimilis]
Length = 333
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 152 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQ 208
Query: 74 CRACRLNKCFMSAMNKD 90
C+ACRL KC MNKD
Sbjct: 209 CQACRLKKCLQMGMNKD 225
>gi|149042999|gb|EDL96573.1| hepatocyte nuclear factor 4, alpha, isoform CRA_b [Rattus
norvegicus]
Length = 452
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 25 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 77
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 78 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 106
>gi|410953686|ref|XP_003983501.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Felis
catus]
Length = 464
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 6/89 (6%)
Query: 4 GTDNSLGD--RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
G+D GD + + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC++ +
Sbjct: 37 GSDMEAGDEDKACVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRSNRE-- 94
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 --CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|297259762|ref|XP_001110097.2| PREDICTED: hepatocyte nuclear factor 4-alpha-like, partial [Macaca
mulatta]
Length = 462
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 35 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 87
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 88 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 116
>gi|256086655|ref|XP_002579512.1| photoreceptor-specific nuclear receptor related [Schistosoma
mansoni]
Length = 567
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 46/73 (63%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C IDK HRNQC+AC
Sbjct: 231 CIVCGDISSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---NGLCIIDKAHRNQCQAC 287
Query: 78 RLNKCFMSAMNKD 90
R+ KC MNKD
Sbjct: 288 RMKKCIRMGMNKD 300
>gi|338719299|ref|XP_003363979.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 464
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLSAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|440893234|gb|ELR46081.1| Nuclear receptor subfamily 2 group F member 6, partial [Bos
grunniens mutus]
Length = 441
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 83 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 138
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 139 CQYCRLKKCFRVGMRKE 155
>gi|73992030|ref|XP_543008.2| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Canis lupus
familiaris]
Length = 464
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|444726234|gb|ELW66773.1| Hepatocyte nuclear factor 4-alpha [Tupaia chinensis]
Length = 464
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNVPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|410953684|ref|XP_003983500.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Felis
catus]
Length = 474
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|405977938|gb|EKC42362.1| Nuclear receptor subfamily 2 group F member 1-A [Crassostrea gigas]
Length = 435
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 7/90 (7%)
Query: 4 GTDNSLG---DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
GT N +G ++ I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+
Sbjct: 66 GTPNGVGSPDNKQQTIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGS--- 122
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 123 -RQCPIDQHHRNQCQYCRLKKCLKMGMRRE 151
>gi|354493671|ref|XP_003508963.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 3
[Cricetulus griseus]
Length = 439
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 22 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 74
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 75 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 103
>gi|400270854|gb|AFP75251.1| hepatocyte nuclear factor 4, partial [Tupaia belangeri]
Length = 474
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNVPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|113205738|ref|NP_001038036.1| hepatocyte nuclear factor 4-alpha [Sus scrofa]
gi|70672404|gb|AAZ06405.1| hepatic nuclear factor 4 [Sus scrofa]
Length = 474
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|74180836|dbj|BAE25624.1| unnamed protein product [Mus musculus]
Length = 470
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|354493673|ref|XP_003508964.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 4
[Cricetulus griseus]
Length = 449
Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 22 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 74
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 75 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 103
>gi|431894415|gb|ELK04215.1| Hepatocyte nuclear factor 4-alpha [Pteropus alecto]
Length = 484
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ T N+LG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNTTNNLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|301753845|ref|XP_002912831.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6-like, partial [Ailuropoda melanoleuca]
Length = 323
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 39 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 94
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 95 CQYCRLKKCFRVGMRKE 111
>gi|351703585|gb|EHB06504.1| Hepatocyte nuclear factor 4-alpha [Heterocephalus glaber]
Length = 474
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|149733291|ref|XP_001503043.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Equus
caballus]
gi|338719297|ref|XP_003363978.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Equus caballus]
Length = 474
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLSAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 46/87 (52%), Positives = 58/87 (66%), Gaps = 5/87 (5%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G+ NS G I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A +
Sbjct: 63 GSQNS-GQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN---- 117
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 118 CPIDQHHRNQCQYCRLKKCLKVGMRRE 144
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats.
Identities = 46/87 (52%), Positives = 58/87 (66%), Gaps = 5/87 (5%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G+ NS G I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A +
Sbjct: 63 GSQNS-GQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN---- 117
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 118 CPIDQHHRNQCQYCRLKKCLKVGMRRE 144
>gi|73992032|ref|XP_852731.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Canis lupus
familiaris]
Length = 474
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|301763976|ref|XP_002917411.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Ailuropoda melanoleuca]
Length = 464
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|385298694|ref|NP_001245284.1| hepatocyte nuclear factor 4-alpha isoform g [Homo sapiens]
gi|119596329|gb|EAW75923.1| hepatocyte nuclear factor 4, alpha, isoform CRA_c [Homo sapiens]
Length = 467
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 40 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 92
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 93 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 121
>gi|7504432|pir||T29238 hypothetical protein F56E3.4 - Caenorhabditis elegans
Length = 351
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/73 (63%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQC+AC
Sbjct: 63 CAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGNCVVDKAHRNQCQAC 119
Query: 78 RLNKCFMSAMNKD 90
RL KC MNKD
Sbjct: 120 RLKKCLNKGMNKD 132
>gi|397511217|ref|XP_003825975.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 3 [Pan
paniscus]
Length = 467
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 40 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 92
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 93 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 121
>gi|355784472|gb|EHH65323.1| hypothetical protein EGM_02066 [Macaca fascicularis]
Length = 527
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 110 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 162
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 163 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 191
>gi|301763974|ref|XP_002917410.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Ailuropoda melanoleuca]
Length = 474
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|355563116|gb|EHH19678.1| hypothetical protein EGK_02387 [Macaca mulatta]
Length = 527
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 110 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 162
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 163 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 191
>gi|281345563|gb|EFB21147.1| hypothetical protein PANDA_005626 [Ailuropoda melanoleuca]
Length = 489
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 62 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 114
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 115 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 143
>gi|345491163|ref|XP_001607668.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Nasonia
vitripennis]
Length = 343
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/75 (62%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+ +PCKVCGDRS GKHYG+Y CDGCS FFKRSI R +YTC A G C IDK RN
Sbjct: 7 IPVPCKVCGDRSYGKHYGVYCCDGCSCFFKRSIRRGVLYTCIAG---NGSCVIDKARRNW 63
Query: 74 CRACRLNKCFMSAMN 88
C CRL KCF +MN
Sbjct: 64 CPHCRLKKCFAVSMN 78
>gi|383858852|ref|XP_003704913.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Megachile rotundata]
Length = 392
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 56/85 (65%), Gaps = 8/85 (9%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
D+S G+ L CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C
Sbjct: 3 DSSRGESL----CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCI 54
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
+D + RNQC+ACR KC M +D
Sbjct: 55 VDVSRRNQCQACRFTKCLQVNMKRD 79
>gi|400154015|ref|NP_001257862.1| hepatocyte nuclear factor 4-alpha isoform 3 [Rattus norvegicus]
Length = 439
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 22 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 74
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 75 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 103
>gi|348501001|ref|XP_003438059.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 410
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 6/89 (6%)
Query: 4 GTDNSLG--DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
G+D G D+ + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC++ +
Sbjct: 37 GSDMEAGEDDKACVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRSNRE-- 94
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 --CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|332253632|ref|XP_003275940.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nomascus
leucogenys]
Length = 366
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>gi|118343705|ref|NP_001071673.1| nuclear receptor [Ciona intestinalis]
gi|70569140|dbj|BAE06356.1| nuclear receptor [Ciona intestinalis]
Length = 416
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG Y+C+GC FFKRS+ RN YTC+ + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQYTCEGCKSFFKRSVRRNLSYTCRGNRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRLNKC M ++
Sbjct: 133 YCRLNKCVKIGMRRE 147
>gi|400153996|ref|NP_001257860.1| hepatocyte nuclear factor 4-alpha isoform 2 [Rattus norvegicus]
Length = 449
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 22 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 74
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 75 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 103
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 80 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 135
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 136 YCRLKKCLKVGMRRE 150
>gi|350424111|ref|XP_003493692.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 392
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 56/85 (65%), Gaps = 8/85 (9%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
D+S G+ L CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C
Sbjct: 3 DSSRGESL----CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCI 54
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
+D + RNQC+ACR KC M +D
Sbjct: 55 VDVSRRNQCQACRFTKCLQVNMKRD 79
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
++ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC
Sbjct: 69 NVECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQC 124
Query: 75 RACRLNKCFMSAMNKD 90
+ CRL KC M ++
Sbjct: 125 QYCRLKKCLKVGMRRE 140
>gi|189237797|ref|XP_973111.2| PREDICTED: similar to PNR-like [Tribolium castaneum]
Length = 426
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
D+S+ + C+VCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C
Sbjct: 5 DDSIPSNKTESLCRVCGDKASGKHYGVSSCDGCRGFFKRSIRRNLEYVCKEN----GRCI 60
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
+D T RNQC+ACR KC M +D
Sbjct: 61 VDVTRRNQCQACRFKKCLQVNMKRD 85
>gi|432913184|ref|XP_004078947.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 6/89 (6%)
Query: 4 GTDNSLGD--RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
G+D GD + + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC++ +
Sbjct: 37 GSDMEAGDDDKACVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRSNRE-- 94
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 --CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|312371094|gb|EFR19357.1| hypothetical protein AND_22643 [Anopheles darlingi]
Length = 486
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVCGDR+SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 9 CKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----GGKCVVDVSRRNQCQAC 64
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 65 RFAKCLQANMRRE 77
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 80 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 135
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 136 YCRLKKCLKVGMRRE 150
>gi|307196423|gb|EFN78012.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 394
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 8/85 (9%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
+N+ G+ L CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C
Sbjct: 3 ENNRGETL----CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCI 54
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
+D + RNQC+ACR KC M +D
Sbjct: 55 VDVSRRNQCQACRFTKCLQVNMKRD 79
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 85 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 140
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 141 YCRLKKCLKVGMRRE 155
>gi|291409662|ref|XP_002721104.1| PREDICTED: hepatocyte nuclear factor 4 alpha [Oryctolagus
cuniculus]
Length = 452
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 80 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 135
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 136 YCRLKKCLKVGMRRE 150
>gi|345328556|ref|XP_001510073.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Ornithorhynchus
anatinus]
Length = 462
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/86 (51%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
T SL + ++ C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C
Sbjct: 46 TSASLLNNGINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FNRQC 101
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKD 90
IDK RNQCR CRL KCF + M K+
Sbjct: 102 VIDKDKRNQCRYCRLRKCFRAGMKKE 127
>gi|158302179|ref|XP_321796.4| AGAP001348-PA [Anopheles gambiae str. PEST]
gi|157012826|gb|EAA01088.4| AGAP001348-PA [Anopheles gambiae str. PEST]
Length = 430
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVCGDR+SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 25 CKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----GGKCVVDVSRRNQCQAC 80
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 81 RFAKCLQANMRRE 93
>gi|432861727|ref|XP_004069708.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oryzias
latipes]
Length = 423
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 80 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 135
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 136 YCRLKKCLKVGMRRE 150
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 80 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 135
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 136 YCRLKKCLKVGMRRE 150
>gi|432102757|gb|ELK30236.1| Hepatocyte nuclear factor 4-alpha [Myotis davidii]
Length = 455
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ N+LG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNATNNLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|16797884|gb|AAL29200.1|AF323687_1 nuclear receptor AmNR7 [Acropora millepora]
Length = 368
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 28 VECAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRASRN----CPIDQHHRNQCQ 83
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 84 YCRLRKCMKVGMRRE 98
>gi|383864113|ref|XP_003707524.1| PREDICTED: transcription factor HNF-4 homolog [Megachile rotundata]
Length = 539
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 121 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCR----FSRNCVVDKDKRNQCRYC 176
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 177 RLRKCFKAGMKKE 189
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD+SSGKHYG+Y+C+GC FFKRSI RN Y C++ CP+D+ HRNQC+
Sbjct: 7 VDCAVCGDKSSGKHYGVYTCEGCKSFFKRSIRRNLEYQCRSN----KKCPVDQHHRNQCQ 62
Query: 76 ACRLNKCFMSAMNKD 90
CRL KCF M ++
Sbjct: 63 HCRLKKCFKVGMRRE 77
>gi|91177055|gb|ABE26882.1| hepatocyte nuclear factor 4alpha [Sus scrofa]
Length = 474
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLIAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|56090166|ref|NP_991120.1| nuclear receptor subfamily 2, group F, member 6 [Danio rerio]
gi|40807137|gb|AAH65330.1| Nuclear receptor subfamily 2, group F, member 6a [Danio rerio]
Length = 402
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/89 (51%), Positives = 60/89 (67%), Gaps = 6/89 (6%)
Query: 4 GTDNSLG--DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
G+D G D+ + C VCGD+SSGKHYG+++C+GC FFKRS+ RN YTC++ D
Sbjct: 37 GSDMEAGEDDKGCVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLNYTCRSNRD-- 94
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 95 --CQIDQHHRNQCQYCRLKKCFRVGMRKE 121
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 5/87 (5%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G+ NS G I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+A +
Sbjct: 62 GSQNS-GQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRN---- 116
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 117 CPIDQHHRNQCQYCRLKKCLKVGMRRE 143
>gi|327287252|ref|XP_003228343.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Anolis
carolinensis]
Length = 459
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C IDK RNQCR C
Sbjct: 59 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHIYSCR----FSRQCVIDKDKRNQCRYC 114
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 115 RLKKCFRAGMKKE 127
>gi|432854604|ref|XP_004067983.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD+SSGKHYG+++C+GC FFKRSI RN Y+C++ D C ID+ HRNQC+
Sbjct: 51 VDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYSCRSNRD----CQIDQHHRNQCQ 106
Query: 76 ACRLNKCFMSAMNKD 90
CRL KCF M K+
Sbjct: 107 YCRLKKCFRVGMRKE 121
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 85 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 140
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 141 YCRLKKCLKVGMRRE 155
>gi|410929439|ref|XP_003978107.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 406
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D+ + C VCGD+SSGKHYG++SC+GC FFKRSI RN Y+C++ + C ID+ H
Sbjct: 46 DKACVVDCVVCGDKSSGKHYGVFSCEGCKSFFKRSIRRNLNYSCRSNRE----CQIDQHH 101
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KCF M K+
Sbjct: 102 RNQCQYCRLKKCFRVGMRKE 121
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 80 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 135
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 136 YCRLKKCLKVGMRRE 150
>gi|326917784|ref|XP_003205176.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Meleagris
gallopavo]
Length = 453
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI +N VYTC+ C +DK RNQCR C
Sbjct: 58 CAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYTCR----FSRQCVVDKDKRNQCRYC 113
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 114 RLKKCFRAGMKKE 126
>gi|348515163|ref|XP_003445109.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 407
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/80 (52%), Positives = 56/80 (70%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D+ + C VCGD+SSGKHYG+++C+GC FFKRSI RN Y+C++ + C ID+ H
Sbjct: 47 DKACVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYSCRSNRE----CQIDQHH 102
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KCF M K+
Sbjct: 103 RNQCQYCRLKKCFRVGMRKE 122
>gi|47217403|emb|CAG00763.1| unnamed protein product [Tetraodon nigroviridis]
Length = 432
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D+ + C VCGD+SSGKHYG++SC+GC FFKRSI RN Y+C++ + C ID+ H
Sbjct: 46 DKACVVDCVVCGDKSSGKHYGVFSCEGCKSFFKRSIRRNLNYSCRSNRE----CQIDQHH 101
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KCF M K+
Sbjct: 102 RNQCQYCRLKKCFRVGMRKE 121
>gi|348563847|ref|XP_003467718.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Cavia
porcellus]
Length = 474
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ N LG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNGLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|348563849|ref|XP_003467719.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Cavia
porcellus]
Length = 464
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ N LG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNGLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 68 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 123
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 124 YCRLKKCLKVGMRRE 138
>gi|327269705|ref|XP_003219633.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Anolis
carolinensis]
Length = 456
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI +N VYTC+ C +DK RNQCR C
Sbjct: 61 CAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYTCR----FSRQCIVDKDKRNQCRYC 116
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 117 RLKKCFRAGMKKE 129
>gi|222431987|gb|ACM50920.1| HNF4alpha11 [Mus musculus]
Length = 413
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 22 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 74
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 75 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 103
>gi|222431985|gb|ACM50919.1| HNF4alpha10 [Mus musculus]
Length = 403
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 22 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 74
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 75 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 103
>gi|222431979|gb|ACM50916.1| HNF4alpha10 [Rattus norvegicus]
Length = 403
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 22 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 74
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 75 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 103
>gi|260835009|ref|XP_002612502.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
gi|229297879|gb|EEN68511.1| hypothetical protein BRAFLDRAFT_75376 [Branchiostoma floridae]
Length = 486
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N VYTC+ C +DK RNQCR C
Sbjct: 53 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHVYTCR----FNRMCVVDKDKRNQCRYC 108
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 109 RLKKCFRAGMKKE 121
>gi|47086055|ref|NP_998404.1| nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
gi|40807068|gb|AAH65332.1| Nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
Length = 404
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 56/80 (70%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D+ + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ + C ID+ H
Sbjct: 46 DKACVVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLNYTCRSNRE----CQIDQHH 101
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KCF M K+
Sbjct: 102 RNQCQYCRLKKCFRVGMRKE 121
>gi|332025246|gb|EGI65420.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 393
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 55/85 (64%), Gaps = 8/85 (9%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
+N G+ L CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C
Sbjct: 3 ENGRGETL----CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCI 54
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
+D + RNQC+ACR KC M +D
Sbjct: 55 VDVSRRNQCQACRFTKCLQVNMKRD 79
>gi|392898442|ref|NP_500190.3| Protein NHR-236 [Caenorhabditis elegans]
gi|351059122|emb|CCD66972.1| Protein NHR-236 [Caenorhabditis elegans]
Length = 283
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/72 (63%), Positives = 53/72 (73%), Gaps = 4/72 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C+VCGDR+SG+HYG+ SCDGC GFFKRSI RN Y+CK GD C ID T RNQC+AC
Sbjct: 13 CRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYSCKESGD----CVIDVTRRNQCQAC 68
Query: 78 RLNKCFMSAMNK 89
R KC AMN+
Sbjct: 69 RFQKCITVAMNR 80
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 71 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 126
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 127 YCRLKKCLKVGMRRE 141
>gi|340722756|ref|XP_003399768.1| PREDICTED: COUP transcription factor 1-like [Bombus terrestris]
Length = 392
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 8/85 (9%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
++S G+ L CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C
Sbjct: 3 ESSRGESL----CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCI 54
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
+D + RNQC+ACR KC M +D
Sbjct: 55 VDVSRRNQCQACRFTKCLQVNMKRD 79
>gi|222431981|gb|ACM50917.1| HNF4alpha11 [Rattus norvegicus]
Length = 413
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 22 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 74
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 75 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 103
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 58/87 (66%), Gaps = 5/87 (5%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G+ NS G I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+A +
Sbjct: 63 GSQNS-GQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRN---- 117
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 118 CPIDQHHRNQCQYCRLKKCLKVGMRRE 144
>gi|126304932|ref|XP_001375141.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Monodelphis
domestica]
Length = 459
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C IDK RNQCR C
Sbjct: 60 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FNRQCVIDKDKRNQCRYC 115
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 116 RLRKCFRAGMKKE 128
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 68 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 123
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 124 YCRLKKCLKVGMRRE 138
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 221 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 276
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 277 YCRLKKCLKVGMRRE 291
>gi|195027481|ref|XP_001986611.1| GH20426 [Drosophila grimshawi]
gi|193902611|gb|EDW01478.1| GH20426 [Drosophila grimshawi]
Length = 207
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 95 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQ 151
Query: 74 CRACRLNKCFMSAMNKDDFK 93
C+ACRL KC + MNKD +
Sbjct: 152 CQACRLKKCLLMGMNKDAVQ 171
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 5/82 (6%)
Query: 10 GDR-LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 68
GD+ + ++ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC++ D CPID+
Sbjct: 54 GDKGVPNVDCLVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRSNRD----CPIDQ 109
Query: 69 THRNQCRACRLNKCFMSAMNKD 90
HRNQC+ CRL KC M ++
Sbjct: 110 HHRNQCQYCRLKKCLKVGMRRE 131
>gi|443688970|gb|ELT91492.1| hypothetical protein CAPTEDRAFT_53417, partial [Capitella teleta]
Length = 390
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGDR+SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D RNQC+AC
Sbjct: 15 CLVCGDRASGKHYGVQSCDGCRGFFKRSIRRNLDYVCKEN----GQCVVDVARRNQCQAC 70
Query: 78 RLNKCFMSAMNKD 90
R KC MN+D
Sbjct: 71 RFKKCLQVNMNRD 83
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 57/87 (65%), Gaps = 7/87 (8%)
Query: 7 NSLGDRLL---DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
N GD+ I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A +
Sbjct: 62 NQAGDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN---- 117
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 118 CPIDQHHRNQCQYCRLKKCLKVGMRRE 144
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CP+D+ HRNQC+
Sbjct: 95 IECIVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPVDQHHRNQCQ 150
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 151 YCRLKKCLKVGMRRE 165
>gi|395502499|ref|XP_003755617.1| PREDICTED: COUP transcription factor 2 isoform 3 [Sarcophilus
harrisii]
Length = 418
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 74 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 129
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 130 YCRLKKCLKVGMRRE 144
>gi|431896654|gb|ELK06066.1| Nuclear receptor ROR-gamma [Pteropus alecto]
Length = 771
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS H N Y+C Q + CPID+T RN+C+
Sbjct: 239 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQHCNVAYSCTRQRN----CPIDRTSRNRCQ 294
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 295 HCRLQKCLALGMSRDAVK 312
>gi|122938528|gb|ABM69088.1| hepatocyte nuclear factor 4 alpha 9 [Rattus norvegicus]
Length = 356
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 25 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 77
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 78 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 106
>gi|301618212|ref|XP_002938509.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Xenopus (Silurana) tropicalis]
Length = 398
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/76 (53%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
++ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+ D CPID+ HRNQC
Sbjct: 60 NVDCLVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRD----CPIDQHHRNQC 115
Query: 75 RACRLNKCFMSAMNKD 90
+ CRL KC M ++
Sbjct: 116 QYCRLKKCLKVGMRRE 131
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 79 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 134
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 135 YCRLKKCLKVGMRRE 149
>gi|122938532|gb|ABM69090.1| hepatocyte nuclear factor 4 alpha 3 [Rattus norvegicus]
gi|122938534|gb|ABM69091.1| hepatocyte nuclear factor 4 alpha 3 [Mus musculus]
Length = 358
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 27 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 79
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 80 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 108
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 80 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 135
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 136 YCRLKKCLKVGMRRE 150
>gi|339238869|ref|XP_003380989.1| zinc finger protein [Trichinella spiralis]
gi|316976049|gb|EFV59394.1| zinc finger protein [Trichinella spiralis]
Length = 562
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/72 (59%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C+VCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK+ D C +D RNQC+AC
Sbjct: 114 CQVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLTYQCKSNDD----CVVDVARRNQCQAC 169
Query: 78 RLNKCFMSAMNK 89
RL KC MN+
Sbjct: 170 RLKKCLQVKMNR 181
>gi|307189123|gb|EFN73579.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 380
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 55/85 (64%), Gaps = 8/85 (9%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
+N G+ L CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C
Sbjct: 4 ENGRGETL----CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----GRCI 55
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
+D + RNQC+ACR KC M +D
Sbjct: 56 VDVSRRNQCQACRFTKCLQVNMKRD 80
>gi|402882458|ref|XP_003904758.1| PREDICTED: LOW QUALITY PROTEIN: hepatocyte nuclear factor
4-alpha, partial [Papio anubis]
Length = 425
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ +SLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 8 NLNAPSSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 60
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 61 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 89
>gi|313233664|emb|CBY09835.1| unnamed protein product [Oikopleura dioica]
Length = 490
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 44/87 (50%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G S D+ I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+
Sbjct: 96 GNSTSTSDKS-HIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLNYTCRGNRS---- 150
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 151 CPIDQHHRNQCQYCRLKKCLKVGMRRE 177
>gi|410049651|ref|XP_003952785.1| PREDICTED: COUP transcription factor 2 [Pan troglodytes]
Length = 421
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 74 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 129
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 130 YCRLKKCLKVGMRRE 144
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 72 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 127
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 128 YCRLKKCLKVGMRRE 142
>gi|157117589|ref|XP_001658840.1| nuclear receptor [Aedes aegypti]
Length = 314
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVCGDR+SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 16 CKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----GGKCVVDVSRRNQCQAC 71
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 72 RFAKCLQANMRRE 84
>gi|122938530|gb|ABM69089.1| hepatocyte nuclear factor 4 alpha 9 [Mus musculus]
Length = 350
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 19 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 71
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 72 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 100
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 74 IECIVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 129
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 130 YCRLKKCLKVGMRRE 144
>gi|195583620|ref|XP_002081615.1| GD11109 [Drosophila simulans]
gi|194193624|gb|EDX07200.1| GD11109 [Drosophila simulans]
Length = 414
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 56/78 (71%), Gaps = 3/78 (3%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 107 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCVVDKAHRNQ 163
Query: 74 CRACRLNKCFMSAMNKDD 91
C+ACRL KC MNKDD
Sbjct: 164 CQACRLKKCLQMGMNKDD 181
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 72 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 127
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 128 YCRLKKCLKVGMRRE 142
>gi|449282512|gb|EMC89345.1| Hepatocyte nuclear factor 4-beta [Columba livia]
Length = 459
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C IDK RNQCR C
Sbjct: 61 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHIYSCR----FSRQCVIDKDKRNQCRYC 116
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 117 RLKKCFRAGMKKE 129
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|149591564|ref|XP_001507309.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Ornithorhynchus
anatinus]
Length = 419
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/90 (50%), Positives = 59/90 (65%), Gaps = 7/90 (7%)
Query: 1 MNVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
+N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 46 VNLNAPNSLGVGAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----F 98
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 99 NRQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N G N I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A +
Sbjct: 19 NPGGPNPAAQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN-- 76
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 77 --CPIDQHHRNQCQYCRLKKCLKVGMRRE 103
>gi|317419814|emb|CBN81850.1| Hepatocyte nuclear factor 4, gamma [Dicentrarchus labrax]
Length = 455
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/90 (51%), Positives = 61/90 (67%), Gaps = 5/90 (5%)
Query: 2 NVGTDNSL-GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
N+ T++SL G + C +CGD+++GKHYG SCDGC GFF+RSI ++ VYTC+
Sbjct: 45 NMPTESSLPGPDGVSSNCAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYTCR----F 100
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRLNKCF + M K+
Sbjct: 101 SRQCIVDKDKRNQCRFCRLNKCFRAGMKKE 130
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 73 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 128
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 129 YCRLKKCLKVGMRRE 143
>gi|405966252|gb|EKC31559.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 622
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
D+ DR +I C VCGD++SGKHYG+ SCDGC GFFKRSI R+ Y CK G+ C
Sbjct: 131 DSGQQDRKPEILCLVCGDKASGKHYGVQSCDGCRGFFKRSIRRSLEYVCKENGN----CV 186
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
+D RNQC+ACR KC MN+D
Sbjct: 187 VDVARRNQCQACRFRKCLEMKMNRD 211
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 73 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 128
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 129 YCRLKKCLKVGMRRE 143
>gi|326927493|ref|XP_003209927.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Meleagris
gallopavo]
Length = 468
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C IDK RNQCR C
Sbjct: 70 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FSRQCVIDKDKRNQCRYC 125
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 126 RLKKCFRAGMKKE 138
>gi|332209102|ref|XP_003253649.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Nomascus
leucogenys]
Length = 418
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|34194038|gb|AAH56550.1| Hnf4a protein [Danio rerio]
Length = 463
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ N LG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NMNAANHLGAGTL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FN 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCIVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|259013249|ref|NP_001158369.1| transcription factor COUP1 [Saccoglossus kowalevskii]
gi|196123801|gb|ACG70189.1| COUP protein [Saccoglossus kowalevskii]
Length = 435
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 100 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 155
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 156 YCRLKKCLKMGMRRE 170
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|348513001|ref|XP_003444031.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oreochromis niloticus]
Length = 610
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD++SG+HYG SC+GC GFFKRSI +N VYTC+ G+ C I+K HRN+C+ C
Sbjct: 120 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGE----CAINKLHRNRCQYC 175
Query: 78 RLNKCFMSAMNKDDFK 93
RL +C M +D +
Sbjct: 176 RLQRCIALGMKQDSVQ 191
>gi|449472225|ref|XP_002196349.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Taeniopygia
guttata]
Length = 468
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C IDK RNQCR C
Sbjct: 70 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FNRQCVIDKDKRNQCRYC 125
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 126 RLKKCFRAGMKKE 138
>gi|432929881|ref|XP_004081273.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oryzias latipes]
Length = 454
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGD+++GKHYG SCDGC GFF+RSI ++ VYTC+ C +DK RNQCR C
Sbjct: 61 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYTCR----FSRQCIVDKDKRNQCRFC 116
Query: 78 RLNKCFMSAMNKD 90
RLNKCF + M K+
Sbjct: 117 RLNKCFRAGMKKE 129
>gi|347800621|ref|NP_001025747.2| hepatic nuclear factor 4beta [Gallus gallus]
Length = 468
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C IDK RNQCR C
Sbjct: 70 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FSRQCVIDKDKRNQCRYC 125
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 126 RLKKCFRAGMKKE 138
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|332209104|ref|XP_003253650.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Nomascus
leucogenys]
Length = 396
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 25 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 77
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 78 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 106
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|148886627|sp|Q91766.2|HNF4A_XENLA RecName: Full=Hepatocyte nuclear factor 4-alpha; Short=HNF-4-alpha;
AltName: Full=Nuclear receptor subfamily 2 group A
member 1
Length = 464
Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 13/99 (13%)
Query: 1 MNVGTDNSLGDRL---------LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRV 51
+++GTD S D ++ C +CGDR++GKHYG SCDGC GFF+RS+ +N +
Sbjct: 34 LSIGTDTSTSDVTSLSASNSIGINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHM 93
Query: 52 YTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
Y+C+ C +DK RNQCR CRL KCF + M K+
Sbjct: 94 YSCR----FSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 55/80 (68%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D+ +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 74 DKNQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSTN----CPIDQHH 129
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 130 RNQCQYCRLKKCMKMGMRRE 149
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/81 (50%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
D+ +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+
Sbjct: 73 ADKNQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQH 128
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
HRNQC+ CRL KC M ++
Sbjct: 129 HRNQCQYCRLKKCMKMGMRRE 149
>gi|441616846|ref|XP_004088402.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
Length = 422
Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|395508412|ref|XP_003758506.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Sarcophilus
harrisii]
Length = 474
Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C IDK RNQCR C
Sbjct: 70 CSICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FNRQCVIDKDKRNQCRYC 125
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 126 RLRKCFRAGMKKE 138
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|270008322|gb|EFA04770.1| hypothetical protein TcasGA2_TC030676 [Tribolium castaneum]
Length = 357
Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
D+S+ + C+VCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G C
Sbjct: 2 DDSIPSNKTESLCRVCGDKASGKHYGVSSCDGCRGFFKRSIRRNLEYVCKEN----GRCI 57
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
+D T RNQC+ACR KC M +D
Sbjct: 58 VDVTRRNQCQACRFKKCLQVNMKRD 82
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 109 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 164
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 165 YCRLKKCLKVGMRRE 179
>gi|35902797|ref|NP_919349.1| hepatocyte nuclear factor 4-alpha [Danio rerio]
gi|26006393|gb|AAN77281.1|AF473824_1 hepatocyte nuclear factor 4 alpha [Danio rerio]
Length = 454
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ N LG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NMNAANHLGAGTL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FN 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCIVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C +CGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 73 IECVICGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 128
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 129 YCRLKKCLKVGMRRE 143
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 84 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 139
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 140 YCRLKKCLKVGMRRE 154
>gi|1150690|emb|CAA85763.1| hepatocyte nuclear factor 4 (HNF4) [Xenopus laevis]
Length = 455
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 13/99 (13%)
Query: 1 MNVGTDNSLGDRL---------LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRV 51
+++GTD S D ++ C +CGDR++GKHYG SCDGC GFF+RS+ +N +
Sbjct: 25 LSIGTDTSTSDVTSLSASNSIGINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHM 84
Query: 52 YTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
Y+C+ C +DK RNQCR CRL KCF + M K+
Sbjct: 85 YSCR----FSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 81 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 136
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 137 YCRLKKCLKVGMRRE 151
>gi|449494303|ref|XP_002198038.2| PREDICTED: hepatocyte nuclear factor 4-gamma [Taeniopygia guttata]
Length = 454
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI +N VY+C+ C +DK RNQCR C
Sbjct: 59 CAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYSCR----FNRQCIVDKDKRNQCRYC 114
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 115 RLKKCFRAGMKKE 127
>gi|47223458|emb|CAF97945.1| unnamed protein product [Tetraodon nigroviridis]
Length = 431
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGD+++GKHYG SCDGC GFF+RSI + VYTC+ C +DK RNQCR C
Sbjct: 60 CAICGDKATGKHYGASSCDGCKGFFRRSIRKGHVYTCR----FSRQCIVDKDKRNQCRFC 115
Query: 78 RLNKCFMSAMNKD 90
RLNKCF + M K+
Sbjct: 116 RLNKCFRAGMKKE 128
>gi|31077209|ref|NP_849181.1| hepatocyte nuclear factor 4-alpha isoform c [Homo sapiens]
gi|119596330|gb|EAW75924.1| hepatocyte nuclear factor 4, alpha, isoform CRA_d [Homo sapiens]
gi|187952661|gb|AAI37541.1| Hepatocyte nuclear factor 4, alpha [Homo sapiens]
gi|187953631|gb|AAI37540.1| Hepatocyte nuclear factor 4, alpha [Homo sapiens]
Length = 417
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|147902641|ref|NP_001080070.1| hepatocyte nuclear factor 4-alpha [Xenopus laevis]
gi|27503338|gb|AAH42224.1| Hnf4 protein [Xenopus laevis]
Length = 464
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 13/99 (13%)
Query: 1 MNVGTDNSLGDRL---------LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRV 51
+++GTD S D ++ C +CGDR++GKHYG SCDGC GFF+RS+ +N +
Sbjct: 34 LSIGTDTSTSDVTSLSASNSIGINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHM 93
Query: 52 YTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
Y+C+ C +DK RNQCR CRL KCF + M K+
Sbjct: 94 YSCR----FSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 85 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 140
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 141 YCRLKKCLKVGMRRE 155
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 83 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 138
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 139 YCRLKKCLKVGMRRE 153
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 84 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 139
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 140 YCRLKKCLKVGMRRE 154
>gi|1595754|emb|CAA61135.1| Hepatocyte nuclear factor 4C [Homo sapiens]
gi|1843523|gb|AAB48083.1| hepatocyte nuclear factor 4-alpha [Homo sapiens]
Length = 408
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 38 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|432114341|gb|ELK36269.1| Nuclear receptor ROR-gamma [Myotis davidii]
Length = 664
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 4/77 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS H Y C Q + CPID+T RN+C+
Sbjct: 240 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQHCGVAYACTRQQN----CPIDRTSRNRCQ 295
Query: 76 ACRLNKCFMSAMNKDDF 92
CRL KC M++DD
Sbjct: 296 HCRLQKCLALGMSRDDL 312
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 81 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 136
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 137 YCRLKKCLKVGMRRE 151
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 83 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 138
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 139 YCRLKKCLKVGMRRE 153
>gi|410908455|ref|XP_003967706.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Takifugu rubripes]
Length = 601
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD++SG+HYG SC+GC GFFKRSI +N VYTC+ G+ C I+K HRN+C+ C
Sbjct: 114 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGE----CAINKLHRNRCQYC 169
Query: 78 RLNKCFMSAMNKDDFK 93
RL +C M +D +
Sbjct: 170 RLQRCIALGMKQDSVQ 185
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 84 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 139
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 140 YCRLKKCLKVGMRRE 154
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 59 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 114
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 115 YCRLKKCLKVGMRRE 129
>gi|410908921|ref|XP_003967939.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Takifugu
rubripes]
Length = 453
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGD+++GKHYG SCDGC GFF+RSI ++ +YTC+ C +DK RNQCR C
Sbjct: 60 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHIYTCR----FSRQCIVDKDKRNQCRFC 115
Query: 78 RLNKCFMSAMNKD 90
RLNKCF + M K+
Sbjct: 116 RLNKCFRAGMKKE 128
>gi|325495563|gb|ADZ17387.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 397
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 59 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 114
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 115 YCRLKKCLKVGMRRE 129
>gi|156556067|emb|CAO79103.1| PNR-like [Aedes aegypti]
gi|403182930|gb|EAT40209.2| AAEL008043-PA [Aedes aegypti]
Length = 422
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVCGDR+SGKHYG+ SCDGC GFFKRSI RN Y CK G C +D + RNQC+AC
Sbjct: 16 CKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----GGKCVVDVSRRNQCQAC 71
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 72 RFAKCLQANMRRE 84
>gi|340726817|ref|XP_003401749.1| PREDICTED: transcription factor HNF-4 homolog isoform 1 [Bombus
terrestris]
Length = 453
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 35 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCR----FSRNCVVDKDKRNQCRYC 90
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 91 RLRKCFKAGMKKE 103
>gi|348512222|ref|XP_003443642.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oreochromis
niloticus]
Length = 477
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGD+++GKHYG SCDGC GFF+RSI ++ VYTC+ C +DK RNQCR C
Sbjct: 57 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYTCR----FSRQCVVDKDKRNQCRFC 112
Query: 78 RLNKCFMSAMNKD 90
RLNKCF + M K+
Sbjct: 113 RLNKCFRAGMKKE 125
>gi|347968055|ref|XP_003436151.1| AGAP002544-PB [Anopheles gambiae str. PEST]
gi|333468185|gb|EGK96862.1| AGAP002544-PB [Anopheles gambiae str. PEST]
Length = 717
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC
Sbjct: 172 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRN----CPIDQHHRNQC 227
Query: 75 RACRLNKCFMSAMNKD 90
+ CRL KC M ++
Sbjct: 228 QFCRLRKCLKMGMRRE 243
>gi|47224170|emb|CAG13090.1| unnamed protein product [Tetraodon nigroviridis]
Length = 746
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+ C
Sbjct: 1 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQYC 56
Query: 78 RLNKCFMSAMNKD 90
RL KC M ++
Sbjct: 57 RLKKCLKVGMRRE 69
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 63 HCPIDKTHRNQCRACRLNKCFMSAMNKD 90
+CPID+ HRNQC+ CRL KC M ++
Sbjct: 458 NCPIDQHHRNQCQYCRLKKCLKVGMRRE 485
>gi|395506966|ref|XP_003757799.1| PREDICTED: hepatocyte nuclear factor 4-alpha [Sarcophilus harrisii]
Length = 358
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 44/90 (48%), Positives = 59/90 (65%), Gaps = 7/90 (7%)
Query: 1 MNVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
+N+ NSLG + C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 46 VNLNAPNSLG---VSPMCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----F 98
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 99 SRQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>gi|313240854|emb|CBY33143.1| unnamed protein product [Oikopleura dioica]
Length = 619
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCKVCGDRSSG HYGI +C+GC GFF+RS N Y C G C +D+T+RN+C+
Sbjct: 40 IPCKVCGDRSSGIHYGIITCEGCKGFFRRSQQNNARYNCPRSGT----CVVDRTNRNRCQ 95
Query: 76 ACRLNKCFMSAMNKDDFK 93
ACRL KC M++D K
Sbjct: 96 ACRLKKCLGLGMSRDAVK 113
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 46 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 101
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 102 YCRLKKCLKVGMRRE 116
>gi|118344390|ref|NP_001072021.1| nuclear receptor [Ciona intestinalis]
gi|70571079|dbj|BAE06675.1| nuclear receptor [Ciona intestinalis]
Length = 802
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCKVCGD+SSG HYG+ +C+GC GFF+RS N Y+C G+ C ID+++RN+C+
Sbjct: 163 IPCKVCGDKSSGIHYGVITCEGCKGFFRRSQQNNYAYSCPRHGN----CIIDRSNRNRCQ 218
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC + M+KD K
Sbjct: 219 HCRLQKCLRAGMSKDAVK 236
>gi|348539244|ref|XP_003457099.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oreochromis
niloticus]
Length = 454
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FNRQCIVDKDKRNQCRYC 106
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 43 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 98
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 99 YCRLKKCLKVGMRRE 113
>gi|350421758|ref|XP_003492948.1| PREDICTED: transcription factor HNF-4 homolog [Bombus impatiens]
Length = 444
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 26 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCR----FSRNCVVDKDKRNQCRYC 81
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 82 RLRKCFKAGMKKE 94
>gi|71725336|ref|NP_001025175.1| hepatocyte nuclear factor 4-alpha isoform f [Homo sapiens]
gi|50980773|gb|AAT91239.1| hepatocyte nuclear factor 4 alpha, transcript variant 9 [Homo
sapiens]
Length = 395
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 25 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 77
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 78 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 106
>gi|395829034|ref|XP_003787666.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 2 [Otolemur
garnettii]
Length = 464
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 84 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 139
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 140 YCRLKKCLKVGMRRE 154
>gi|440907586|gb|ELR57717.1| COUP transcription factor 1, partial [Bos grunniens mutus]
Length = 368
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 29 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 84
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 85 YCRLKKCLKVGMRRE 99
>gi|449486195|ref|XP_002190881.2| PREDICTED: hepatocyte nuclear factor 4-alpha [Taeniopygia
guttata]
Length = 431
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 27 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FNRQCVVDKDKRNQCRYC 82
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 83 RLKKCFRAGMKKE 95
>gi|395829032|ref|XP_003787665.1| PREDICTED: hepatocyte nuclear factor 4-alpha isoform 1 [Otolemur
garnettii]
Length = 474
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 116 RLKKCFRAGMKKE 128
>gi|16797886|gb|AAL29201.1|AF323688_1 nuclear receptor AmNR8 [Acropora millepora]
Length = 379
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 53/73 (72%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGDR +GKHYGI +C+GC GFFKRS+ +N Y C QG+ G CP+DK HRN+C+ C
Sbjct: 1 CLVCGDRGTGKHYGIVACEGCKGFFKRSVRKNLHYRC--QGN--GACPVDKVHRNRCQRC 56
Query: 78 RLNKCFMSAMNKD 90
RLNKC M K+
Sbjct: 57 RLNKCLTMGMKKE 69
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 191 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 246
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 247 RNQCQYCRLKKCLKMGMRRE 266
>gi|47229086|emb|CAG03838.1| unnamed protein product [Tetraodon nigroviridis]
Length = 455
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 52 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FNRQCIVDKDKRNQCRYC 107
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 108 RLKKCFRAGMKKE 120
>gi|340726819|ref|XP_003401750.1| PREDICTED: transcription factor HNF-4 homolog isoform 2 [Bombus
terrestris]
Length = 485
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 67 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCR----FSRNCVVDKDKRNQCRYC 122
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 123 RLRKCFKAGMKKE 135
>gi|221131649|ref|XP_002156561.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Hydra magnipapillata]
Length = 419
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C++CGDRSSG+HYG+ SCDGC GFFKRS+ RN Y CK QG+ C ID RNQC+ C
Sbjct: 35 CRICGDRSSGRHYGVPSCDGCRGFFKRSVRRNVSYACKFQGE----CVIDLKRRNQCQFC 90
Query: 78 RLNKCFMSAMNKD 90
R +C MNK+
Sbjct: 91 RYQRCLKVGMNKN 103
>gi|291222082|ref|XP_002731047.1| PREDICTED: hepatocyte nuclear factor 4, alpha-like [Saccoglossus
kowalevskii]
Length = 454
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ C +DK RNQCR C
Sbjct: 10 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FSRTCVVDKDKRNQCRYC 65
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 66 RLKKCFRAGMKKE 78
>gi|226437755|gb|ACO56245.1| hepatocyte nuclear factor 4 alpha [Sparus aurata]
Length = 454
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FNRQCIVDKDKRNQCRYC 106
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 44 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 99
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 100 YCRLKKCLKVGMRRE 114
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 79 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 134
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 135 YCRLKKCLKVGMRRE 149
>gi|449273615|gb|EMC83088.1| Nuclear receptor subfamily 2 group E member 1, partial [Columba
livia]
Length = 376
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/54 (74%), Positives = 45/54 (83%)
Query: 9 LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKG 62
L R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G
Sbjct: 6 LSGRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQQRG 59
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 66 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 121
Query: 76 ACRLNKCFMSAMNKD 90
CR KC M ++
Sbjct: 122 YCRFKKCLKVGMRRE 136
>gi|301773902|ref|XP_002922374.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Ailuropoda
melanoleuca]
Length = 483
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/75 (58%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKR++ R C+ G CP+DK HRNQC+
Sbjct: 110 LQCRVCGDSSSGKHYGIYACNGCSGFFKRTVRRRLXXRCQVGA---GMCPVDKAHRNQCQ 166
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC MN+D
Sbjct: 167 ACRLKKCLQEGMNQD 181
>gi|24646228|ref|NP_731681.1| seven up, isoform A [Drosophila melanogaster]
gi|62512142|sp|P16376.3|7UP2_DROME RecName: Full=Steroid receptor seven-up, isoform A; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoform A
gi|23171091|gb|AAN13541.1| seven up, isoform A [Drosophila melanogaster]
Length = 746
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 193 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 248
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 249 RNQCQYCRLKKCLKMGMRRE 268
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 144 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 199
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 200 RYQKCLAMGMKRE 212
>gi|66472508|ref|NP_001018458.1| nuclear receptor subfamily 2 group C member 1 [Danio rerio]
gi|63102167|gb|AAH95365.1| Nuclear receptor subfamily 2, group C, member 1 [Danio rerio]
Length = 600
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD++SG+HYG SC+GC GFFKRSI +N VYTC+ G+ C I+K HRN+C+ C
Sbjct: 113 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGE----CVINKHHRNRCQYC 168
Query: 78 RLNKCFMSAMNKDDFK 93
RL +C M +D +
Sbjct: 169 RLQRCMALGMKQDSVQ 184
>gi|354486852|ref|XP_003505591.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-gamma-like [Cricetulus griseus]
Length = 463
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 127 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 182
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 183 RYQKCLVMGMKRE 195
>gi|443685606|gb|ELT89160.1| hypothetical protein CAPTEDRAFT_171549 [Capitella teleta]
Length = 428
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC+
Sbjct: 90 IECIVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRN----CPIDQHHRNQCQ 145
Query: 76 ACRLNKCFMSAMNKD 90
CR KC S M ++
Sbjct: 146 YCRFKKCLKSGMRRE 160
>gi|334326740|ref|XP_001371708.2| PREDICTED: nuclear receptor ROR-beta-like [Monodelphis domestica]
Length = 663
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 151 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRN----CPIDRTSRNRCQ 206
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 207 HCRLQKCLALGMSRDAVK 224
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 144 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 199
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 200 RYQKCLAMGMKRE 212
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 43 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 98
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 99 YCRLKKCLKVGMRRE 113
>gi|358335063|dbj|GAA34732.2| nuclear receptor subfamily 2 group F member 1-B [Clonorchis
sinensis]
Length = 748
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 56/80 (70%), Gaps = 4/80 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+D +VCGDRSSGKHYG ++C+GC FFKRS+ ++ Y C+++ G CP+D RNQ
Sbjct: 216 VDQQARVCGDRSSGKHYGQFTCEGCKSFFKRSVRKSASYVCRSE----GQCPVDAQRRNQ 271
Query: 74 CRACRLNKCFMSAMNKDDFK 93
C+ACR+ +C ++ M K+ +
Sbjct: 272 CQACRMTRCLLAGMKKEGLR 291
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 165 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 220
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 221 RYQKCLVMGMKRE 233
>gi|410928927|ref|XP_003977851.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Takifugu rubripes]
Length = 454
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FNRQCIVDKDKRNQCRYC 106
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 58 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 113
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 114 YCRLKKCLKVGMRRE 128
>gi|313228671|emb|CBY07463.1| unnamed protein product [Oikopleura dioica]
Length = 578
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCKVCGDRSSG HYGI +C+GC GFF+RS N Y C G C +D+T+RN+C+
Sbjct: 40 IPCKVCGDRSSGIHYGIITCEGCKGFFRRSQQNNARYNCPRSGT----CVVDRTNRNRCQ 95
Query: 76 ACRLNKCFMSAMNKDDFK 93
ACRL KC M++D K
Sbjct: 96 ACRLKKCLGLGMSRDAVK 113
>gi|431891667|gb|ELK02268.1| COUP transcription factor 2, partial [Pteropus alecto]
gi|432091002|gb|ELK24218.1| COUP transcription factor 2, partial [Myotis davidii]
Length = 343
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 6 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 61
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 62 YCRLKKCLKVGMRRE 76
>gi|391338722|ref|XP_003743704.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Metaseiulus occidentalis]
Length = 394
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/76 (53%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+ + CPID+ HRNQC
Sbjct: 46 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRGNRN----CPIDQHHRNQC 101
Query: 75 RACRLNKCFMSAMNKD 90
+ CRL KC M ++
Sbjct: 102 QDCRLKKCLKMGMRRE 117
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|341881950|gb|EGT37885.1| hypothetical protein CAEBREN_28641 [Caenorhabditis brenneri]
Length = 512
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 7/88 (7%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
D+S G RL+ C VCGD + GKHYGI +C+GC GFF+RS+ R Y+C+ GD CP
Sbjct: 42 DSSNGGRLM---CDVCGDVAFGKHYGINACNGCKGFFRRSVWSRRQYSCRFGGD----CP 94
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKDDFK 93
+ K HRN CR+CRL KCF MN D +
Sbjct: 95 VVKEHRNVCRSCRLKKCFEVGMNPDSVQ 122
>gi|45387535|ref|NP_991109.1| hepatic nuclear factor 4, beta [Danio rerio]
gi|41351199|gb|AAH65657.1| Hepatic nuclear factor 4, beta [Danio rerio]
Length = 465
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +C DR++GKHYG SCDGC GFF+RS+ +N YTC+ C +DK RNQCR C
Sbjct: 63 CAICADRATGKHYGASSCDGCKGFFRRSVRKNHAYTCR----FSRQCVVDKDKRNQCRYC 118
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 119 RLRKCFRAGMRKE 131
>gi|307191079|gb|EFN74819.1| Transcription factor HNF-4-like protein [Camponotus floridanus]
Length = 426
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 12/91 (13%)
Query: 8 SLGDRLLDIP--------CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD 59
++G +L++P C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+
Sbjct: 5 AVGGPVLNLPSVPVGNAACAICGDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCR---- 60
Query: 60 LKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
L C IDK RNQCR CRL KCF + M K+
Sbjct: 61 LMRKCQIDKDKRNQCRYCRLRKCFRAGMKKE 91
>gi|313214248|emb|CBY42707.1| unnamed protein product [Oikopleura dioica]
Length = 479
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCKVCGDRSSG HYGI +C+GC GFF+RS N Y C G C +D+T+RN+C+
Sbjct: 40 IPCKVCGDRSSGIHYGIITCEGCKGFFRRSQQNNARYNCPRSGT----CVVDRTNRNRCQ 95
Query: 76 ACRLNKCFMSAMNKDDFK 93
ACRL KC M++D K
Sbjct: 96 ACRLKKCLGLGMSRDAVK 113
>gi|68132040|gb|AAY85286.1| TR2, partial [Danio rerio]
Length = 580
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD++SG+HYG SC+GC GFFKRSI +N VYTC+ G+ C I+K HRN+C+ C
Sbjct: 98 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGE----CVINKHHRNRCQYC 153
Query: 78 RLNKCFMSAMNKDDFK 93
RL +C M +D +
Sbjct: 154 RLQRCMALGMKQDSVQ 169
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|41351197|gb|AAH65651.1| Nr2f1b protein [Danio rerio]
Length = 388
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CP+D+ HRNQC+
Sbjct: 52 VECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPVDQHHRNQCQ 107
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 108 YCRLKKCLKVGMRRE 122
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CP+D+ HRNQC+
Sbjct: 52 VECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPVDQHHRNQCQ 107
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 108 YCRLKKCLKVGMRRE 122
>gi|347968053|ref|XP_312394.4| AGAP002544-PA [Anopheles gambiae str. PEST]
gi|333468184|gb|EAA07520.4| AGAP002544-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC
Sbjct: 172 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRN----CPIDQHHRNQC 227
Query: 75 RACRLNKCFMSAMNKD 90
+ CRL KC M ++
Sbjct: 228 QFCRLRKCLKMGMRRE 243
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ VYTC+ D C IDK RN+C+ C
Sbjct: 101 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKD----CLIDKRQRNRCQYC 156
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 157 RYQKCLVMGMKRE 169
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 44 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 99
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 100 YCRLKKCLKVGMRRE 114
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 146 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 201
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 202 RYQKCLVMGMKRE 214
>gi|410928929|ref|XP_003977852.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2
[Takifugu rubripes]
Length = 441
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 38 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FNRQCIVDKDKRNQCRYC 93
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 94 RLKKCFRAGMKKE 106
>gi|340729306|ref|XP_003402945.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Bombus
terrestris]
Length = 400
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
+ +S D+ +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + C
Sbjct: 44 SGSSQTDKSPNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRN----C 99
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKD 90
PID+ HRNQC+ CRL KC M ++
Sbjct: 100 PIDQHHRNQCQFCRLKKCLKMGMRRE 125
>gi|319063119|ref|NP_001187505.1| hepatocyte nuclear factor 4-alpha [Ictalurus punctatus]
gi|308323187|gb|ADO28730.1| hepatocyte nuclear factor 4-alpha [Ictalurus punctatus]
Length = 454
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ N LG L C +CGDR++GKHYG SCDGC GFF+R + +N +Y+C+
Sbjct: 38 NLNAANHLGTGTL---CAICGDRATGKHYGASSCDGCKGFFRRGVRKNHMYSCR----FS 90
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 91 RQCIVDKDKRNQCRYCRLKKCFRAGMKKE 119
>gi|157423601|gb|AAI53624.1| Hnf4a protein [Danio rerio]
Length = 427
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ N LG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 11 NMNAANHLGAGTL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FN 63
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 64 RQCIVDKDKRNQCRYCRLKKCFRAGMKKE 92
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 123 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 178
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 179 RYQKCLVMGMKRE 191
>gi|442618705|ref|NP_001262499.1| seven up, isoform E [Drosophila melanogaster]
gi|440217344|gb|AGB95881.1| seven up, isoform E [Drosophila melanogaster]
Length = 554
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 193 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 248
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 249 RNQCQYCRLKKCLKMGMRRE 268
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|383855696|ref|XP_003703346.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Megachile
rotundata]
Length = 394
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 4/86 (4%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
+ +S D+ +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + C
Sbjct: 38 SGSSQTDKSPNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRN----C 93
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKD 90
PID+ HRNQC+ CRL KC M ++
Sbjct: 94 PIDQHHRNQCQFCRLKKCLKMGMRRE 119
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 189 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 244
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 245 RNQCQYCRLKKCLKMGMRRE 264
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 107 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 162
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 163 RYQKCLVMGMKRE 175
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|395825135|ref|XP_003785797.1| PREDICTED: retinoic acid receptor RXR-gamma [Otolemur garnettii]
Length = 463
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|344236823|gb|EGV92926.1| Retinoic acid receptor RXR-gamma [Cricetulus griseus]
Length = 414
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 131 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 186
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 187 RYQKCLVMGMKRE 199
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 189 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 244
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 245 RNQCQYCRLKKCLKMGMRRE 264
>gi|417409902|gb|JAA51440.1| Putative coup transcription factor 2 isoform 1, partial [Desmodus
rotundus]
Length = 346
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 9 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 64
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 65 YCRLKKCLKVGMRRE 79
>gi|355778322|gb|EHH63358.1| COUP transcription factor 2, partial [Macaca fascicularis]
Length = 352
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 15 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 70
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 71 YCRLKKCLKVGMRRE 85
>gi|281347624|gb|EFB23208.1| hypothetical protein PANDA_013481 [Ailuropoda melanoleuca]
Length = 357
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 20 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 75
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 76 YCRLKKCLKVGMRRE 90
>gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter transcription factor II [Bos taurus]
Length = 339
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 2 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 57
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 58 YCRLKKCLKVGMRRE 72
>gi|405972081|gb|EKC36868.1| Hepatocyte nuclear factor 4-alpha [Crassostrea gigas]
Length = 506
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY+C+ +C +DK RNQCR C
Sbjct: 55 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCR----FNRNCVVDKDKRNQCRYC 110
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 111 RLRKCFRAGMKKE 123
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 75 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 130
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 131 YCRLKKCLKVGMRRE 145
>gi|440909469|gb|ELR59375.1| COUP transcription factor 2, partial [Bos grunniens mutus]
Length = 348
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 11 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 66
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 67 YCRLKKCLKVGMRRE 81
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 192 DSKQSIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 247
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 248 RNQCQYCRLKKCLKMGMRRE 267
>gi|161076819|ref|NP_001097126.1| hepatocyte nuclear factor 4, isoform D [Drosophila melanogaster]
gi|157400121|gb|ABV53653.1| hepatocyte nuclear factor 4, isoform D [Drosophila melanogaster]
Length = 708
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 146 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FARNCVVDKDKRNQCRYC 201
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 202 RLRKCFKAGMKKE 214
>gi|301788566|ref|XP_002929700.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Ailuropoda
melanoleuca]
Length = 455
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
T + D ++ C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C
Sbjct: 46 TSMNTADNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQC 101
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKD 90
+DK RNQCR CRL KCF + M K+
Sbjct: 102 VVDKDKRNQCRYCRLRKCFRAGMKKE 127
>gi|118344432|ref|NP_001072038.1| nuclear receptor [Ciona intestinalis]
gi|70571084|dbj|BAE06676.1| nuclear receptor [Ciona intestinalis]
Length = 651
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCKVCGD+SSG HYG+ +C+GC GFF+RS N Y+C G+ C ID+++RN+C+
Sbjct: 12 IPCKVCGDKSSGIHYGVITCEGCKGFFRRSQQNNYAYSCPRHGN----CIIDRSNRNRCQ 67
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC + M+KD K
Sbjct: 68 HCRLQKCLRAGMSKDAVK 85
>gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori]
Length = 421
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
+ +S D+ ++ C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ C
Sbjct: 67 SGSSATDKGQNVECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRS----C 122
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKD 90
PID+ HRNQC+ CRL KC M ++
Sbjct: 123 PIDQHHRNQCQFCRLRKCLKMGMRRE 148
>gi|281346029|gb|EFB21613.1| hypothetical protein PANDA_017952 [Ailuropoda melanoleuca]
Length = 358
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 19 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 74
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 75 YCRLKKCLKVGMRRE 89
>gi|270010979|gb|EFA07427.1| hepatocyte nuclear factor 4 [Tribolium castaneum]
Length = 502
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 73 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCR----FSRNCIVDKDKRNQCRYC 128
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 129 RLRKCFKAGMKKE 141
>gi|410968382|ref|XP_003990686.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Felis catus]
Length = 518
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGDRSSG HYG+ +C+GC GFF+RS N VY+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDRSSGIHYGVITCEGCKGFFRRSQQCNVVYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|47215173|emb|CAG01439.1| unnamed protein product [Tetraodon nigroviridis]
Length = 350
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 56/76 (73%), Gaps = 4/76 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS H N +Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQHNNAMYSCSRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDD 91
CRL KC M++D+
Sbjct: 64 HCRLQKCLALGMSRDE 79
>gi|511934|dbj|BAA06101.1| hepatocyte nuclear factor 4 [Mus musculus]
gi|1093944|prf||2105186A hepatocyte nuclear factor 4
Length = 465
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 51 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FSRQCVVDKDKRNQCRYC 106
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 107 RLKKCFRAGMKKE 119
>gi|410949022|ref|XP_003981224.1| PREDICTED: COUP transcription factor 1, partial [Felis catus]
Length = 335
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 8 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 63
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 64 YCRLKKCLKVGMRRE 78
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 198 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 253
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 254 RNQCQYCRLKKCLKMGMRRE 273
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|344273185|ref|XP_003408404.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Loxodonta
africana]
Length = 455
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/80 (52%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D L+ C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C +DK
Sbjct: 52 DNGLNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQCVVDKDK 107
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQCR CRL KCF + M K+
Sbjct: 108 RNQCRYCRLRKCFRAGMKKE 127
>gi|410968384|ref|XP_003990687.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Felis catus]
Length = 497
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGDRSSG HYG+ +C+GC GFF+RS N VY+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDRSSGIHYGVITCEGCKGFFRRSQQCNVVYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|307196327|gb|EFN77940.1| Transcription factor HNF-4-like protein [Harpegnathos saltator]
Length = 468
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 56 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FNRNCVVDKDKRNQCRYC 111
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 112 RLRKCFKAGMKKE 124
>gi|326924824|ref|XP_003208625.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Meleagris
gallopavo]
Length = 494
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 143 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 198
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 199 RYQKCLAMGMKRE 211
>gi|449491752|ref|XP_002191570.2| PREDICTED: nuclear receptor ROR-beta-like [Taeniopygia guttata]
Length = 461
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 104 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRN----CLIDRTNRNRCQ 159
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 160 HCRLQKCLALGMSRDAVK 177
>gi|17737921|ref|NP_524325.1| seven up, isoform B [Drosophila melanogaster]
gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Steroid receptor seven-up, isoforms B/C; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoforms B/C
gi|158519|gb|AAA62770.1| seven-up protein type 1 [Drosophila melanogaster]
gi|7299588|gb|AAF54773.1| seven up, isoform B [Drosophila melanogaster]
Length = 543
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 193 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 248
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 249 RNQCQYCRLKKCLKMGMRRE 268
>gi|359070758|ref|XP_002691733.2| PREDICTED: retinoic acid receptor RXR-alpha [Bos taurus]
Length = 756
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 429 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 484
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 485 RYQKCLAMGMKRE 497
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 260 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 315
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 316 RYQKCLAMGMKRE 328
>gi|195051719|ref|XP_001993157.1| GH13232 [Drosophila grimshawi]
gi|193900216|gb|EDV99082.1| GH13232 [Drosophila grimshawi]
Length = 774
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 239 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FARNCVVDKDKRNQCRYC 294
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 295 RLRKCFKAGMKKE 307
>gi|195577679|ref|XP_002078696.1| GD22387 [Drosophila simulans]
gi|194190705|gb|EDX04281.1| GD22387 [Drosophila simulans]
Length = 703
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 141 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FARNCVVDKDKRNQCRYC 196
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 197 RLRKCFKAGMKKE 209
>gi|194901808|ref|XP_001980443.1| GG18706 [Drosophila erecta]
gi|195500393|ref|XP_002097354.1| GE26169 [Drosophila yakuba]
gi|190652146|gb|EDV49401.1| GG18706 [Drosophila erecta]
gi|194183455|gb|EDW97066.1| GE26169 [Drosophila yakuba]
Length = 543
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 193 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 248
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 249 RNQCQYCRLKKCLKMGMRRE 268
>gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aedes aegypti]
Length = 493
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC
Sbjct: 150 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRN----CPIDQHHRNQC 205
Query: 75 RACRLNKCFMSAMNKD 90
+ CRL KC M ++
Sbjct: 206 QFCRLRKCLKMGMRRE 221
>gi|57116108|gb|AAW33563.1| hepatic nuclear factor 4beta [Gallus gallus]
Length = 459
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+R + +N VY+C+ C IDK RNQCR C
Sbjct: 61 CSICGDRATGKHYGASSCDGCKGFFRRIVRKNHVYSCR----FSRQCVIDKDKRNQCRYC 116
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 117 RLKKCFRAGMKKE 129
>gi|47224450|emb|CAG08700.1| unnamed protein product [Tetraodon nigroviridis]
Length = 597
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD++SG+HYG SC+GC GFFKRSI +N VYTC+ G+ C I+K HRN+C+ C
Sbjct: 114 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGE----CAINKLHRNRCQYC 169
Query: 78 RLNKCFMSAMNKDDFK 93
RL +C M ++ +
Sbjct: 170 RLQRCIALGMKQESVQ 185
>gi|195443458|ref|XP_002069434.1| GK18664 [Drosophila willistoni]
gi|194165519|gb|EDW80420.1| GK18664 [Drosophila willistoni]
Length = 691
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 129 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FSRNCVVDKDKRNQCRYC 184
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 185 RLRKCFKAGMKKE 197
>gi|24582907|ref|NP_476887.2| hepatocyte nuclear factor 4, isoform A [Drosophila melanogaster]
gi|442626918|ref|NP_723414.2| hepatocyte nuclear factor 4, isoform E [Drosophila melanogaster]
gi|22945982|gb|AAF52702.2| hepatocyte nuclear factor 4, isoform A [Drosophila melanogaster]
gi|28317035|gb|AAO39537.1| RE09535p [Drosophila melanogaster]
gi|220942524|gb|ACL83805.1| Hnf4-PA [synthetic construct]
gi|220952740|gb|ACL88913.1| Hnf4-PA [synthetic construct]
gi|440213579|gb|AAF52703.2| hepatocyte nuclear factor 4, isoform E [Drosophila melanogaster]
Length = 704
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 142 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FARNCVVDKDKRNQCRYC 197
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 198 RLRKCFKAGMKKE 210
>gi|16797876|gb|AAL29196.1|AF323683_1 nuclear receptor AmNR4 isoform A [Acropora millepora]
Length = 416
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGDR+SGKHYGI +C+GC GFFKRSI +N Y+C QG+ G CPI+K HRN+C+ C
Sbjct: 38 CLVCGDRASGKHYGIVACEGCKGFFKRSIRKNLHYSC--QGN--GACPINKVHRNRCQRC 93
Query: 78 RLNKCFMSAMNKD 90
RL KC M ++
Sbjct: 94 RLKKCLTMGMKRE 106
>gi|281348540|gb|EFB24124.1| hypothetical protein PANDA_019943 [Ailuropoda melanoleuca]
Length = 446
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
T + D ++ C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C
Sbjct: 37 TSMNTADNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQC 92
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKD 90
+DK RNQCR CRL KCF + M K+
Sbjct: 93 VVDKDKRNQCRYCRLRKCFRAGMKKE 118
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 76 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 131
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 132 YCRLKKCLKVGMRRE 146
>gi|198472026|ref|XP_001355813.2| GA21689 [Drosophila pseudoobscura pseudoobscura]
gi|198139573|gb|EAL32872.2| GA21689 [Drosophila pseudoobscura pseudoobscura]
Length = 686
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 144 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FSRNCVVDKDKRNQCRYC 199
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 200 RLRKCFKAGMKKE 212
>gi|195398447|ref|XP_002057833.1| GJ17882 [Drosophila virilis]
gi|194141487|gb|EDW57906.1| GJ17882 [Drosophila virilis]
Length = 679
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 142 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FSRNCVVDKDKRNQCRYC 197
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 198 RLRKCFKAGMKKE 210
>gi|198459164|ref|XP_002138650.1| GA24899 [Drosophila pseudoobscura pseudoobscura]
gi|198136599|gb|EDY69208.1| GA24899 [Drosophila pseudoobscura pseudoobscura]
Length = 190
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G C +DK HRNQ
Sbjct: 9 LGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAG---TGRCIVDKAHRNQ 65
Query: 74 CRACRLNKCFMSAMNKDDFK 93
C+ACRL KC MNKD +
Sbjct: 66 CQACRLKKCLQMGMNKDAVQ 85
>gi|324512063|gb|ADY45006.1| Steroid receptor seven-up, isoform B/C [Ascaris suum]
Length = 417
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
LL C VCGD+SSGKHYG +SC+GC FFKRSI R+ YTC+ + CP+D HRN
Sbjct: 72 LLGTECVVCGDKSSGKHYGQFSCEGCKSFFKRSIRRSLSYTCRGSKN----CPVDINHRN 127
Query: 73 QCRACRLNKCFMSAMNKD 90
QC+ CRL KC M K+
Sbjct: 128 QCQYCRLKKCEKMGMRKE 145
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|16797878|gb|AAL29197.1|AF323684_1 nuclear receptor AmNR4 isoform B [Acropora millepora]
Length = 408
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGDR+SGKHYGI +C+GC GFFKRSI +N Y+C QG+ G CPI+K HRN+C+ C
Sbjct: 30 CLVCGDRASGKHYGIVACEGCKGFFKRSIRKNLHYSC--QGN--GACPINKVHRNRCQRC 85
Query: 78 RLNKCFMSAMNKD 90
RL KC M ++
Sbjct: 86 RLKKCLTMGMKRE 98
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 143 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 198
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 199 RYQKCLAMGMKRE 211
>gi|112984316|ref|NP_001037474.1| hepatocyte nuclear factor 4 isoform a [Bombyx mori]
gi|2734850|gb|AAB93762.1| hepatocyte nuclear factor 4 isoform a [Bombyx mori]
Length = 436
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +YTC+ +C +DK RNQCR C
Sbjct: 57 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHLYTCR----FSRNCVVDKDKRNQCRYC 112
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 113 RLRKCFKAGMKKE 125
>gi|68132010|gb|AAY85271.1| HNF4gamma, partial [Danio rerio]
Length = 413
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 4/83 (4%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 67
S G+ + C +CGD+++GKHYG SCDGC GFF+RSI ++ VY+C+ C +D
Sbjct: 19 SQGENGVSSNCAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FNRQCVVD 74
Query: 68 KTHRNQCRACRLNKCFMSAMNKD 90
K RNQCR CRL+KCF + M K+
Sbjct: 75 KDKRNQCRFCRLHKCFRAGMKKE 97
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 123 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKD----CLIDKRQRNRCQYC 178
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 179 RYQKCLVMGMKRE 191
>gi|195339307|ref|XP_002036261.1| GM12759 [Drosophila sechellia]
gi|194130141|gb|EDW52184.1| GM12759 [Drosophila sechellia]
Length = 703
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 141 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FARNCVVDKDKRNQCRYC 196
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 197 RLRKCFKAGMKKE 209
>gi|149755798|ref|XP_001492700.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Equus caballus]
Length = 539
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|194858671|ref|XP_001969229.1| GG24056 [Drosophila erecta]
gi|190661096|gb|EDV58288.1| GG24056 [Drosophila erecta]
Length = 704
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 142 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FSRNCVVDKDKRNQCRYC 197
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 198 RLRKCFKAGMKKE 210
>gi|345793141|ref|XP_544134.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 2 [Canis lupus
familiaris]
Length = 446
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C +DK RNQCR C
Sbjct: 50 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQCVVDKDKRNQCRYC 105
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 106 RLRKCFRAGMKKE 118
>gi|189164166|gb|ACD77184.1| putative hepatocyte nuclear factor 4 nuclear hormone receptor
[Callosobruchus maculatus]
Length = 507
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS +N +YTC+ +C +DK RNQCR C
Sbjct: 83 CAICGDRATGKHYGAASCDGCKGFFRRSARKNHLYTCR----FNRNCVVDKDKRNQCRYC 138
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 139 RLRKCFKAGMKKE 151
>gi|341898179|gb|EGT54114.1| hypothetical protein CAEBREN_05776 [Caenorhabditis brenneri]
Length = 520
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K HRN
Sbjct: 90 INLICVVCGDQAFGKHYGVNACNGCKGFFRRSVWNNRQYLCR----FEGRCAIAKEHRNV 145
Query: 74 CRACRLNKCFMSAMN 88
CRACRL +CF++ MN
Sbjct: 146 CRACRLKQCFVAGMN 160
>gi|341874211|gb|EGT30146.1| CBN-FAX-1 protein [Caenorhabditis brenneri]
Length = 396
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 55/76 (72%), Gaps = 3/76 (3%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQC+AC
Sbjct: 102 CAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGNCVVDKAHRNQCQAC 158
Query: 78 RLNKCFMSAMNKDDFK 93
RL KC MNKD +
Sbjct: 159 RLKKCLNKGMNKDGIR 174
>gi|195473133|ref|XP_002088850.1| GE10817 [Drosophila yakuba]
gi|194174951|gb|EDW88562.1| GE10817 [Drosophila yakuba]
Length = 703
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 141 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FSRNCVVDKDKRNQCRYC 196
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 197 RLRKCFKAGMKKE 209
>gi|194760751|ref|XP_001962596.1| GF14359 [Drosophila ananassae]
gi|190616293|gb|EDV31817.1| GF14359 [Drosophila ananassae]
Length = 735
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 172 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FSRNCVVDKDKRNQCRYC 227
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 228 RLRKCFKAGMKKE 240
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 184 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 239
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 240 YCRLKKCLKVGMRRE 254
>gi|115430095|ref|NP_001068579.1| hepatocyte nuclear factor 4-gamma [Danio rerio]
gi|115313265|gb|AAI24294.1| Hepatocyte nuclear factor 4, gamma [Danio rerio]
gi|182891948|gb|AAI65580.1| Hnf4g protein [Danio rerio]
Length = 444
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 4/83 (4%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 67
S G+ + C +CGD+++GKHYG SCDGC GFF+RSI ++ VY+C+ C +D
Sbjct: 38 SQGENGVSSNCAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FNRQCVVD 93
Query: 68 KTHRNQCRACRLNKCFMSAMNKD 90
K RNQCR CRL+KCF + M K+
Sbjct: 94 KDKRNQCRFCRLHKCFRAGMKKE 116
>gi|391342683|ref|XP_003745645.1| PREDICTED: COUP transcription factor 1-like [Metaseiulus
occidentalis]
Length = 465
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 56/82 (68%), Gaps = 6/82 (7%)
Query: 9 LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 68
+GDR + C+VCGDR+SG+HYG+ SCDGC GFFKRS+ R+ ++CK G C +D
Sbjct: 72 IGDR--EPLCRVCGDRASGRHYGVASCDGCRGFFKRSVRRDLRFSCKEGGT----CVVDV 125
Query: 69 THRNQCRACRLNKCFMSAMNKD 90
RNQC+ACRL KC M ++
Sbjct: 126 ARRNQCQACRLKKCLAVNMRRE 147
>gi|348574546|ref|XP_003473051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cavia porcellus]
Length = 549
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 222 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 277
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 278 RYQKCLAMGMKRE 290
>gi|395855952|ref|XP_003800407.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Otolemur
garnettii]
Length = 514
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS H N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQHCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|351702679|gb|EHB05598.1| Retinoic acid receptor RXR-gamma-A [Heterocephalus glaber]
Length = 616
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 212 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 267
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 268 RYQKCLAMGMKRE 280
>gi|84617148|emb|CAH59197.1| seven-up protein [Cupiennius salei]
Length = 353
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/87 (50%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
GT +S I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+ +
Sbjct: 6 GTPSSSDKGGQQIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRN---- 61
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 62 CPIDQHHRNQCQYCRLKKCLKMGMRRE 88
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 127 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 182
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 183 RYQKCLAMGMKRE 195
>gi|301613114|ref|XP_002936047.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Xenopus
(Silurana) tropicalis]
Length = 458
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N VY C+ C +DK RNQCR C
Sbjct: 59 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYACR----FSRQCIVDKDKRNQCRYC 114
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 115 RLRKCFRAGMKKE 127
>gi|156378253|ref|XP_001631058.1| predicted protein [Nematostella vectensis]
gi|156218091|gb|EDO38995.1| predicted protein [Nematostella vectensis]
Length = 378
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVCGD +GKHYG+ +C+GC GFFKR++ +N +YTC+ D C IDK HRN+C+ C
Sbjct: 13 CKVCGDNGTGKHYGVVACEGCKGFFKRTVRKNLIYTCRGSND----CFIDKVHRNRCQKC 68
Query: 78 RLNKCFMSAMNKD 90
R KC + M K+
Sbjct: 69 RFVKCLTAGMKKE 81
>gi|21310111|gb|AAM46151.1|AF378829_1 nuclear hormone receptor RXR [Branchiostoma floridae]
Length = 522
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C++CGDR+SGKHYG+YSC+GC GFFKR++ ++ Y C+ D C IDK RN+C+ C
Sbjct: 160 CQICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDNRD----CVIDKRQRNRCQYC 215
Query: 78 RLNKCFMSAMNKDDFK 93
R KC M ++D +
Sbjct: 216 RYQKCLAMGMKREDVQ 231
>gi|12644293|sp|P49866.2|HNF4_DROME RecName: Full=Transcription factor HNF-4 homolog; Short=dHNF4;
AltName: Full=Nuclear receptor subfamily 2 group A
member 4
Length = 666
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 104 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FARNCVVDKDKRNQCRYC 159
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 160 RLRKCFKAGMKKE 172
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|345782792|ref|XP_540323.3| PREDICTED: nuclear receptor ROR-gamma [Canis lupus familiaris]
Length = 500
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N VY+C Q + CPID+T RN+C+
Sbjct: 11 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVVYSCTRQQN----CPIDRTSRNRCQ 66
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 67 HCRLQKCLALGMSRDAVK 84
>gi|345497210|ref|XP_001599315.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nasonia
vitripennis]
Length = 417
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK C +D + RNQC+AC
Sbjct: 11 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKEN----SQCVVDVSRRNQCQAC 66
Query: 78 RLNKCFMSAMNKD 90
R KC M +D
Sbjct: 67 RFRKCLQVNMKRD 79
>gi|395855954|ref|XP_003800408.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Otolemur
garnettii]
Length = 502
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS H N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQHCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|338728283|ref|XP_001490847.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Equus
caballus]
Length = 446
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
T + D ++ C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C
Sbjct: 37 TSMNTADNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQC 92
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKD 90
+DK RNQCR CRL KCF + M K+
Sbjct: 93 VVDKDKRNQCRYCRLRKCFRAGMKKE 118
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 189 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 244
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 245 RNQCQYCRLKKCLKMGMRRE 264
>gi|24582909|ref|NP_723413.1| hepatocyte nuclear factor 4, isoform B [Drosophila melanogaster]
gi|22945983|gb|AAN10680.1| hepatocyte nuclear factor 4, isoform B [Drosophila melanogaster]
Length = 732
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 170 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FARNCVVDKDKRNQCRYC 225
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 226 RLRKCFKAGMKKE 238
>gi|390357871|ref|XP_003729121.1| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 1
[Strongylocentrotus purpuratus]
Length = 493
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 6/74 (8%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCK-AQGDLKGHCPIDKTHRNQCRA 76
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +G C +DK RNQCR
Sbjct: 52 CSICGDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCRFCRG-----CVVDKDKRNQCRY 106
Query: 77 CRLNKCFMSAMNKD 90
CRL KCF + M K+
Sbjct: 107 CRLKKCFRAGMKKE 120
>gi|268578711|ref|XP_002644338.1| C. briggsae CBR-FAX-1 protein [Caenorhabditis briggsae]
Length = 418
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 55/76 (72%), Gaps = 3/76 (3%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD SSGKHYGI +C+GCSGFFKRS+ R +Y C+A G+C +DK HRNQC+AC
Sbjct: 102 CAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAG---TGNCVVDKAHRNQCQAC 158
Query: 78 RLNKCFMSAMNKDDFK 93
RL KC MNKD +
Sbjct: 159 RLKKCLNKGMNKDAVQ 174
>gi|395510982|ref|XP_003759744.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Sarcophilus harrisii]
Length = 455
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C +DK RNQCR C
Sbjct: 59 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQCVVDKDKRNQCRYC 114
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 115 RLKKCFRAGMKKE 127
>gi|149058123|gb|EDM09280.1| retinoid X receptor gamma, isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>gi|193598915|ref|XP_001944021.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Acyrthosiphon pisum]
Length = 446
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
+I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ HRNQC
Sbjct: 92 NIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHHRNQC 147
Query: 75 RACRLNKCFMSAMNKD 90
+ CRL KC M ++
Sbjct: 148 QYCRLKKCLKMGMRRE 163
>gi|410987323|ref|XP_003999954.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Felis
catus]
Length = 446
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C +DK RNQCR C
Sbjct: 50 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQCVVDKDKRNQCRYC 105
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 106 RLRKCFRAGMKKE 118
>gi|1575768|gb|AAB09592.1| hepatocyte nuclear factor 4 homolog [Drosophila melanogaster]
Length = 666
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 104 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FARNCVVDKDKRNQCRYC 159
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 160 RLRKCFKAGMKKE 172
>gi|538262|gb|AAA21479.1| ovalbumin upstream promoter transcription factor II, partial [Homo
sapiens]
Length = 351
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>gi|296485043|tpg|DAA27158.1| TPA: COUP transcription factor 1 [Bos taurus]
Length = 352
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 85 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 140
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 141 YCRLKKCLKVGMRRE 155
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 188 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 243
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 244 RNQCQYCRLKKCLKMGMRRE 263
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 149 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 204
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 205 RYQKCLVMGMKRE 217
>gi|241669014|gb|ACS68165.1| FI04795p [Drosophila melanogaster]
Length = 738
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 176 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FARNCVVDKDKRNQCRYC 231
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 232 RLRKCFKAGMKKE 244
>gi|443687228|gb|ELT90277.1| hypothetical protein CAPTEDRAFT_177303 [Capitella teleta]
Length = 352
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+ +PCKVCGD+S GKHYG+Y CDGCS FFKRSI + VY+C G KG C IDK RN
Sbjct: 11 VPVPCKVCGDKSFGKHYGVYCCDGCSCFFKRSIRKRMVYSCI--GQCKGDCIIDKARRNW 68
Query: 74 CRACRLNKCFMSAMNKD 90
C CRL KCF MNKD
Sbjct: 69 CPHCRLTKCFRVTMNKD 85
>gi|242020457|ref|XP_002430670.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515850|gb|EEB17932.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 344
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 44/80 (55%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D L+ CKVCGD++SGKHYG+ SCDGC GFFKRSI R Y CK C +D T
Sbjct: 2 DHKLEALCKVCGDKASGKHYGVISCDGCRGFFKRSIRRGLAYHCKESNS----CIVDVTR 57
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ACR KC M +D
Sbjct: 58 RNQCQACRFKKCLSVNMKRD 77
>gi|344308765|ref|XP_003423047.1| PREDICTED: hypothetical protein LOC100674208 [Loxodonta africana]
Length = 1318
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 692 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 747
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 748 RYQKCLAMGMKRE 760
>gi|291388149|ref|XP_002710691.1| PREDICTED: hepatocyte nuclear factor 4, gamma [Oryctolagus
cuniculus]
Length = 455
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C +DK RNQCR C
Sbjct: 59 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQCVVDKDKRNQCRYC 114
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 115 RLRKCFRAGMKKE 127
>gi|17508461|ref|NP_492607.1| Protein NHR-62, isoform a [Caenorhabditis elegans]
gi|74956442|sp|O02279.3|NHR62_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-62
gi|14530651|emb|CAA21675.2| Protein NHR-62, isoform a [Caenorhabditis elegans]
Length = 515
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K HRN
Sbjct: 94 INLVCVVCGDQAFGKHYGVNACNGCKGFFRRSVWHNRQYLCR----FEGRCAIAKEHRNV 149
Query: 74 CRACRLNKCFMSAMN 88
CRACRL +CF++ MN
Sbjct: 150 CRACRLKQCFVAGMN 164
>gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma floridae]
Length = 443
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ CPID+ HRNQC+
Sbjct: 104 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRT----CPIDQHHRNQCQ 159
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 160 YCRLKKCLKMGMRRE 174
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 189 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 244
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 245 RYQKCLAMGMKRE 257
>gi|326930478|ref|XP_003211374.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-alpha-like [Meleagris gallopavo]
Length = 497
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 170 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 225
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 226 RYQKCLAMGMKRE 238
>gi|308494386|ref|XP_003109382.1| CRE-NHR-62 protein [Caenorhabditis remanei]
gi|308246795|gb|EFO90747.1| CRE-NHR-62 protein [Caenorhabditis remanei]
Length = 515
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K HRN
Sbjct: 95 VNLICVVCGDQAFGKHYGVNACNGCKGFFRRSVWNNRQYLCR----FEGRCAIAKEHRNV 150
Query: 74 CRACRLNKCFMSAMN 88
CRACRL +CF++ MN
Sbjct: 151 CRACRLKQCFVAGMN 165
>gi|354471113|ref|XP_003497788.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Cricetulus
griseus]
Length = 455
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C +DK RNQCR C
Sbjct: 59 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQCVVDKDKRNQCRYC 114
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 115 RLRKCFRAGMKKE 127
>gi|348588691|ref|XP_003480098.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Cavia porcellus]
Length = 455
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C +DK RNQCR C
Sbjct: 59 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQCVVDKDKRNQCRYC 114
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 115 RLRKCFRAGMKKE 127
>gi|59709838|gb|AAW88549.1| TLL [Schistosoma mansoni]
Length = 76
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 55/76 (72%), Gaps = 6/76 (7%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH------CPIDKTHR 71
C VC D SSGKHYGIY+CDGC+GFFKRSI RNR YTCK++G G C +DK+HR
Sbjct: 1 CHVCEDHSSGKHYGIYACDGCAGFFKRSIRRNRQYTCKSRGTTIGSKSGIVVCRVDKSHR 60
Query: 72 NQCRACRLNKCFMSAM 87
NQCRACRL KC M
Sbjct: 61 NQCRACRLTKCLEVGM 76
>gi|301620547|ref|XP_002939634.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Xenopus
(Silurana) tropicalis]
Length = 453
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 5/84 (5%)
Query: 7 NSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 66
NSL D ++ C +CGDR++GKHYG SCDGC GFF+RSI + VY+C+ C +
Sbjct: 49 NSL-DNGINSMCAICGDRATGKHYGASSCDGCKGFFRRSIRKCHVYSCR----FSRQCIV 103
Query: 67 DKTHRNQCRACRLNKCFMSAMNKD 90
DK RNQCR CRL KCF + M K+
Sbjct: 104 DKDKRNQCRYCRLKKCFRAGMKKE 127
>gi|149637974|ref|XP_001510105.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Ornithorhynchus anatinus]
Length = 561
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 44/97 (45%), Positives = 63/97 (64%), Gaps = 9/97 (9%)
Query: 1 MNVGTDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 56
+ + TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+
Sbjct: 49 IQILTDNSSTDQTPNKIFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRG 107
Query: 57 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
D C I+K HRN+C+ CRL +C M +D +
Sbjct: 108 SKD----CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 140
>gi|405966658|gb|EKC31918.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 707
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 17 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 76
PC VCGD++SG+HYG SC+GC GFFKRSI + Y C+ D CP++K HRN+C+
Sbjct: 178 PCVVCGDKASGRHYGCTSCEGCKGFFKRSIRKQLGYACRGNKD----CPVNKPHRNRCQY 233
Query: 77 CRLNKCFMSAMNKDDFK 93
CRL KC M + +
Sbjct: 234 CRLQKCLAVGMRAESVQ 250
>gi|444705874|gb|ELW47258.1| Hepatocyte nuclear factor 4-gamma [Tupaia chinensis]
Length = 497
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQCVVDKDKRNQCRYC 115
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 116 RLRKCFRAGMKKE 128
>gi|426235662|ref|XP_004011799.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Ovis aries]
Length = 446
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C +DK RNQCR C
Sbjct: 50 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQCVVDKDKRNQCRYC 105
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 106 RLRKCFRAGMKKE 118
>gi|1588511|prf||2208436B hepatocyte nuclear factor 4
Length = 774
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG +CDGC GFF+RSI ++ +Y+C+ C +DK RNQCR C
Sbjct: 378 CAICGDRATGKHYGASTCDGCKGFFRRSIRKSHIYSCR----FSRQCVVDKDKRNQCRYC 433
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 434 RLRKCFRAGMKKE 446
>gi|387017404|gb|AFJ50820.1| Nuclear receptor subfamily 2 group C member 1-A-like [Crotalus
adamanteus]
Length = 640
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 63/96 (65%), Gaps = 7/96 (7%)
Query: 1 MNVGTDNSLGDRLLDIP---CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ 57
+ + TDNS +++L+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+
Sbjct: 129 IQILTDNSSTEQILNKVFDLCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGT 188
Query: 58 GDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
D C I+K HRN+C+ CRL +C M +D +
Sbjct: 189 RD----CVINKHHRNRCQYCRLQRCIAFGMKQDSVQ 220
>gi|334324576|ref|XP_001372023.2| PREDICTED: nuclear receptor ROR-gamma [Monodelphis domestica]
Length = 530
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q CPID+T RN+C+
Sbjct: 45 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQS----CPIDRTSRNRCQ 100
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 101 HCRLQKCLALGMSRDAVK 118
>gi|170587670|ref|XP_001898597.1| Steroid receptor seven-up type 2 [Brugia malayi]
gi|158593867|gb|EDP32461.1| Steroid receptor seven-up type 2, putative [Brugia malayi]
Length = 530
Score = 97.8 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/78 (55%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
LL C VCGD+SSGKHYG +SC+GC FFKRSI R+ YTC+ + CP+D HRN
Sbjct: 183 LLGTECVVCGDKSSGKHYGQFSCEGCKSFFKRSIRRSLNYTCRGSKN----CPVDVNHRN 238
Query: 73 QCRACRLNKCFMSAMNKD 90
QC+ CRL KC M K+
Sbjct: 239 QCQYCRLKKCERMGMRKE 256
>gi|332840360|ref|XP_001137621.2| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Pan troglodytes]
gi|397473630|ref|XP_003808309.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Pan paniscus]
gi|410209720|gb|JAA02079.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410255878|gb|JAA15906.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410298356|gb|JAA27778.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410342159|gb|JAA40026.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
Length = 604
Score = 97.8 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 9/97 (9%)
Query: 1 MNVGTDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 56
M + TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY C+
Sbjct: 94 MQLLTDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYACRG 152
Query: 57 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
D C I+K HRN+C+ CRL +C M +D +
Sbjct: 153 SKD----CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|195115900|ref|XP_002002494.1| GI12430 [Drosophila mojavensis]
gi|193913069|gb|EDW11936.1| GI12430 [Drosophila mojavensis]
Length = 715
Score = 97.8 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 174 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FARNCVVDKDKRNQCRYC 229
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 230 RLRKCFKAGMKKE 242
>gi|431905326|gb|ELK10371.1| Nuclear receptor subfamily 2 group C member 1 [Pteropus alecto]
Length = 605
Score = 97.8 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKIFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|348504634|ref|XP_003439866.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 1
[Oreochromis niloticus]
Length = 453
Score = 97.8 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ + CPIDK RN+C+ C
Sbjct: 129 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKE----CPIDKRQRNRCQYC 184
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 185 RYQKCLAMGMKRE 197
>gi|395855283|ref|XP_003800096.1| PREDICTED: hepatocyte nuclear factor 4-gamma [Otolemur garnettii]
Length = 446
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
T + D ++ C +CGDR++GKHYG SCDGC GFF+RSI ++ +Y+C+ C
Sbjct: 37 TSMNTSDNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHIYSCR----FSRQC 92
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKD 90
+DK RNQCR CRL KCF + M K+
Sbjct: 93 VVDKDKRNQCRYCRLRKCFRAGMKKE 118
>gi|358339638|dbj|GAA47660.1| hepatocyte nuclear factor 4 [Clonorchis sinensis]
Length = 533
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 43/72 (59%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG YSCDGC GFF+RS+ RN YTC+ K C I K RNQCR C
Sbjct: 30 CLICGDRATGKHYGAYSCDGCKGFFRRSVRRNHSYTCRH----KRACVITKDKRNQCRFC 85
Query: 78 RLNKCFMSAMNK 89
RL KCF M K
Sbjct: 86 RLRKCFRVGMKK 97
>gi|10198057|gb|AAG15163.1| nuclear receptor NHR-62 [Caenorhabditis elegans]
Length = 489
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K HRN
Sbjct: 68 INLVCVVCGDQAFGKHYGVNACNGCKGFFRRSVWHNRQYLCR----FEGRCAIAKEHRNV 123
Query: 74 CRACRLNKCFMSAMN 88
CRACRL +CF++ MN
Sbjct: 124 CRACRLKQCFVAGMN 138
>gi|758420|gb|AAA64751.1| ROR gamma [Homo sapiens]
Length = 560
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 112 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 167
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 168 RYQKCLAMGMKRE 180
>gi|345325277|ref|XP_003430902.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Ornithorhynchus anatinus]
Length = 337
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/45 (84%), Positives = 42/45 (93%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 56
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKS 54
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 276 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 331
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 332 RYQKCLAMGMKRE 344
>gi|403276111|ref|XP_003929757.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Saimiri
boliviensis boliviensis]
Length = 470
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 44/90 (48%), Positives = 60/90 (66%), Gaps = 9/90 (10%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKIFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C I+K HRN+C+ CRL +C M +D
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQD 182
>gi|291239171|ref|XP_002739506.1| PREDICTED: nuclear orphan receptor TR2/4-like [Saccoglossus
kowalevskii]
Length = 595
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 17 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 76
PC VCGD++SG+HYG+ SC+GC GFFKRSI + YTC+ D C + K HRN+C+
Sbjct: 106 PCVVCGDKASGRHYGVVSCEGCKGFFKRSIRKQLCYTCRGSKD----CQVTKHHRNRCQF 161
Query: 77 CRLNKCFMSAMNKDDFK 93
CRL KC M + +
Sbjct: 162 CRLQKCLAMGMKAESVQ 178
>gi|126321023|ref|XP_001367478.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Monodelphis
domestica]
Length = 455
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C +DK RNQCR C
Sbjct: 59 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQCVVDKDKRNQCRYC 114
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M ++
Sbjct: 115 RLKKCFRAGMKRE 127
>gi|45383862|ref|NP_989455.1| nuclear receptor subfamily 2 group C member 1 [Gallus gallus]
gi|21518633|gb|AAM60748.1|AF323691_1 testis-specific receptor 2-like protein TRR [Gallus gallus]
Length = 569
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 7/96 (7%)
Query: 1 MNVGTDNSLGDRLLDIP---CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ 57
+ + TDNS ++ L+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+
Sbjct: 53 IQILTDNSSNEQALNKVFDLCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGT 112
Query: 58 GDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
D C I+K HRN+C+ CRL +C M +D +
Sbjct: 113 KD----CVINKHHRNRCQYCRLQRCIAFGMKQDSVQ 144
>gi|297299621|ref|XP_001087848.2| PREDICTED: hepatocyte nuclear factor 4-gamma-like isoform 2 [Macaca
mulatta]
Length = 455
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C +DK RNQCR C
Sbjct: 59 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQCVVDKDKRNQCRYC 114
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 115 RLRKCFRAGMKKE 127
>gi|296480539|tpg|DAA22654.1| TPA: hepatocyte nuclear factor 4, gamma [Bos taurus]
Length = 425
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
T + D ++ C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C
Sbjct: 16 TSMNTADNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQC 71
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKD 90
+DK RNQCR CRL KCF + M K+
Sbjct: 72 VVDKDKRNQCRYCRLRKCFRAGMKKE 97
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 145 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 200
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 201 RYQKCLAMGMKRE 213
>gi|343958546|dbj|BAK63128.1| orphan nuclear receptor TR2 [Pan troglodytes]
Length = 604
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 9/97 (9%)
Query: 1 MNVGTDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 56
M + TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY C+
Sbjct: 94 MQLLTDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYACRG 152
Query: 57 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
D C I+K HRN+C+ CRL +C M +D +
Sbjct: 153 SKD----CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|126339675|ref|XP_001370429.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Monodelphis domestica]
Length = 605
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 9/97 (9%)
Query: 1 MNVGTDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 56
+ + TD+S D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+
Sbjct: 94 IQILTDHSSSDQTPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRG 152
Query: 57 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
D C I+K HRN+C+ CRL +C M +D +
Sbjct: 153 SKD----CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|390475727|ref|XP_002759056.2| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Callithrix
jacchus]
Length = 445
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 4/86 (4%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
T + D ++ C +CGDR++GKHYG SCDGC GFF+RSI ++ +Y+C+ C
Sbjct: 36 TSMNTADNGVNCLCAICGDRATGKHYGASSCDGCKGFFRRSIRKSHIYSCR----FSRQC 91
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKD 90
+DK RNQCR CRL KCF + M K+
Sbjct: 92 VVDKDKRNQCRYCRLRKCFRAGMKKE 117
>gi|355752946|gb|EHH56992.1| hypothetical protein EGM_06542, partial [Macaca fascicularis]
Length = 453
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 126 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCKYC 181
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 182 RYQKCLAMGMKRE 194
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 454 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CVIDKRQRNRCQYC 509
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 510 RYQKCLAMGMKRE 522
>gi|345793143|ref|XP_003433716.1| PREDICTED: hepatocyte nuclear factor 4-gamma isoform 1 [Canis
lupus familiaris]
Length = 408
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RSI ++ VY+C+ C +DK RNQCR C
Sbjct: 12 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSCR----FSRQCVVDKDKRNQCRYC 67
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 68 RLRKCFRAGMKKE 80
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 147 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 202
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 203 RYQKCLAMGMKRE 215
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 160 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 215
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 216 RYQKCLAMGMKRE 228
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 152 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 207
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 208 RYQKCLAMGMKRE 220
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|344267618|ref|XP_003405663.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Loxodonta africana]
Length = 596
Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 90 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 147
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 148 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 177
>gi|322792862|gb|EFZ16695.1| hypothetical protein SINV_10759 [Solenopsis invicta]
Length = 397
Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 46/88 (52%), Positives = 55/88 (62%), Gaps = 11/88 (12%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIH---RNRVYTCKAQGDLKG 62
+N G+ L CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK G
Sbjct: 3 ENGRGEAL----CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRYARNLDYVCKEN----G 54
Query: 63 HCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +D + RNQC+ACR KC M +D
Sbjct: 55 RCIVDVSRRNQCQACRFTKCLQVNMKRD 82
>gi|149742912|ref|XP_001493970.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Equus caballus]
Length = 605
Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 112 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 167
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 168 RYQKCLAMGMKRE 180
>gi|355564580|gb|EHH21080.1| Orphan nuclear receptor TR2 [Macaca mulatta]
Length = 558
Score = 97.4 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|301767868|ref|XP_002919364.1| PREDICTED: nuclear receptor ROR-gamma-like [Ailuropoda melanoleuca]
Length = 529
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 4/84 (4%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
G ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS + VY+C Q + CPID+T
Sbjct: 34 GAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCHVVYSCTRQQN----CPIDRT 89
Query: 70 HRNQCRACRLNKCFMSAMNKDDFK 93
RN+C+ CRL KC M++D K
Sbjct: 90 SRNRCQHCRLQKCLALGMSRDAVK 113
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 135 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 190
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 191 RYQKCLAMGMKRE 203
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 135 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 190
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 191 RYQKCLAMGMKRE 203
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 131 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CVIDKRQRNRCQYC 186
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 187 RYQKCLAMGMKRE 199
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 130 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 185
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 186 RYQKCLAMGMKRE 198
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 103 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CVIDKRQRNRCQYC 158
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 159 RYQKCLAMGMKRE 171
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 104 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 159
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 160 RYQKCLAMGMKRE 172
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 125 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 180
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 181 RYQKCLAMGMKRE 193
>gi|73978201|ref|XP_854792.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Canis
lupus familiaris]
Length = 605
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMRQDSVQ 185
>gi|410965258|ref|XP_003989167.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Felis
catus]
Length = 605
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMRQDSVQ 185
>gi|395513258|ref|XP_003760844.1| PREDICTED: nuclear receptor ROR-beta-like [Sarcophilus harrisii]
Length = 334
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 15 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRN----CPIDRTSRNRCQ 70
Query: 76 ACRLNKCFMSAMNKDD 91
CRL KC M++D+
Sbjct: 71 HCRLQKCLALGMSRDE 86
>gi|345306534|ref|XP_001510767.2| PREDICTED: nuclear receptor ROR-alpha-like [Ornithorhynchus
anatinus]
Length = 657
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
Query: 8 SLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPID 67
SL ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID
Sbjct: 197 SLAAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLID 252
Query: 68 KTHRNQCRACRLNKCFMSAMNKDDFK 93
+T RN+C+ CRL KC M++D K
Sbjct: 253 RTSRNRCQHCRLQKCLAVGMSRDAVK 278
>gi|301767748|ref|XP_002919289.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Ailuropoda melanoleuca]
Length = 605
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMRQDSVQ 185
>gi|395538223|ref|XP_003771084.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Sarcophilus harrisii]
Length = 605
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 9/97 (9%)
Query: 1 MNVGTDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 56
+ + TD+S D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+
Sbjct: 94 IQILTDHSSSDQTPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRG 152
Query: 57 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
D C I+K HRN+C+ CRL +C M +D +
Sbjct: 153 SKD----CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|449266899|gb|EMC77883.1| Nuclear receptor subfamily 2 group C member 1 [Columba livia]
Length = 640
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 9/97 (9%)
Query: 1 MNVGTDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 56
+ + TDNS + ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+
Sbjct: 130 IQILTDNSPNEQNLNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRG 188
Query: 57 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
D C I+K HRN+C+ CRL +C M +D +
Sbjct: 189 TKD----CVINKHHRNRCQYCRLQRCIAFGMKQDSVQ 221
>gi|296212600|ref|XP_002752912.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Callithrix jacchus]
Length = 604
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKIFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|390357873|ref|XP_780389.2| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 2
[Strongylocentrotus purpuratus]
Length = 468
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 6/74 (8%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCK-AQGDLKGHCPIDKTHRNQCRA 76
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +G C +DK RNQCR
Sbjct: 21 CSICGDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCRFCRG-----CVVDKDKRNQCRY 75
Query: 77 CRLNKCFMSAMNKD 90
CRL KCF + M K+
Sbjct: 76 CRLKKCFRAGMKKE 89
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 112 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 167
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 168 RYQKCLAMGMKRE 180
>gi|326911680|ref|XP_003202184.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Meleagris gallopavo]
Length = 562
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 7/96 (7%)
Query: 1 MNVGTDNSLGDRLLDIP---CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ 57
+ + TDNS ++ L+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+
Sbjct: 53 IQILTDNSPNEQALNKVFDLCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGT 112
Query: 58 GDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
D C I+K HRN+C+ CRL +C M +D +
Sbjct: 113 KD----CVINKHHRNRCQYCRLQRCIAFGMKQDSVQ 144
>gi|197102124|ref|NP_001125682.1| nuclear receptor ROR-gamma [Pongo abelii]
gi|75061866|sp|Q5RAP4.1|RORG_PONAB RecName: Full=Nuclear receptor ROR-gamma; AltName: Full=Nuclear
receptor RZR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group F member 3; AltName:
Full=Retinoid-related orphan receptor-gamma
gi|55728856|emb|CAH91166.1| hypothetical protein [Pongo abelii]
Length = 518
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|402887264|ref|XP_003907017.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 1 [Papio anubis]
gi|380816090|gb|AFE79919.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
gi|383421223|gb|AFH33825.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
gi|384949168|gb|AFI38189.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
Length = 604
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|147899545|ref|NP_001084198.1| nuclear receptor subfamily 2 group C member 1-A [Xenopus laevis]
gi|82201033|sp|Q6GN21.1|N2C1A_XENLA RecName: Full=Nuclear receptor subfamily 2 group C member 1-A;
AltName: Full=Developmental orphan receptor 2-A;
Short=DOR2-A; Short=xDOR2-A; AltName: Full=Orphan
nuclear receptor TR2-A; AltName: Full=Testicular
receptor 2-A
gi|49118996|gb|AAH73700.1| DOR2 protein [Xenopus laevis]
Length = 637
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 5/88 (5%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
D +L +L+++ C VCGD++SG+HYG +C+GC GFFKRSI +N VYTC+ D C
Sbjct: 141 DQNLNKQLVEL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKD----CV 195
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKDDFK 93
I+K +RN+C+ CRL +C M +D +
Sbjct: 196 INKHYRNRCQYCRLQRCMSLGMKQDSVQ 223
>gi|313219531|emb|CBY30454.1| unnamed protein product [Oikopleura dioica]
Length = 439
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 55/79 (69%), Gaps = 4/79 (5%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R L+ C +CGDR++GKHYG +SCDGC GFF+RSI +N Y C+ + D C I++ +R
Sbjct: 41 RALENHCAICGDRATGKHYGAHSCDGCKGFFRRSIRKNHSYQCRRERD----CTIERANR 96
Query: 72 NQCRACRLNKCFMSAMNKD 90
N CR CRL KCF + M ++
Sbjct: 97 NSCRHCRLIKCFRAGMRRE 115
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 112 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 167
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 168 RYQKCLAMGMKRE 180
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 144 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CIIDKRQRNRCQYC 199
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 200 RYQKCLAMGMKRE 212
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 135 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 190
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 191 RYQKCLAMGMKRE 203
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 126 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 181
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 182 RYQKCLAMGMKRE 194
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|291389741|ref|XP_002711252.1| PREDICTED: nuclear receptor subfamily 2, group C, member 1
[Oryctolagus cuniculus]
Length = 605
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSQDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 112 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 167
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 168 RYQKCLAMGMKRE 180
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>gi|75066579|sp|Q95K90.1|NR2C1_MACFA RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|14388521|dbj|BAB60786.1| hypothetical protein [Macaca fascicularis]
gi|355762671|gb|EHH62044.1| Orphan nuclear receptor TR2 [Macaca fascicularis]
Length = 603
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 97 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 154
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 155 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 184
>gi|344275191|ref|XP_003409397.1| PREDICTED: nuclear receptor ROR-gamma-like [Loxodonta africana]
Length = 752
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 264 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 319
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 320 HCRLQKCLALGMSRDAVK 337
>gi|391333983|ref|XP_003741389.1| PREDICTED: transcription factor HNF-4 homolog [Metaseiulus
occidentalis]
Length = 648
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C IDK RNQCR C
Sbjct: 255 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FHRNCVIDKDKRNQCRYC 310
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 311 RLRKCFRAGMRKE 323
>gi|395750689|ref|XP_002828930.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pongo
abelii]
Length = 215
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 60/92 (65%), Gaps = 7/92 (7%)
Query: 3 VGTDNSLGDRL---LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD 59
+D GD L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D
Sbjct: 38 AASDAEPGDEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD 97
Query: 60 LKGHCPIDKTHRNQCRACRLNKCFMSAMNKDD 91
C ID+ HRNQC+ CRL KCF M K+D
Sbjct: 98 ----CQIDQHHRNQCQYCRLKKCFRVGMRKED 125
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 131 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 186
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 187 RYQKCLAMGMKRE 199
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 165 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 220
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 221 RYQKCLAMGMKRE 233
>gi|326926497|ref|XP_003209436.1| PREDICTED: nuclear receptor ROR-alpha-like [Meleagris gallopavo]
Length = 543
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 91 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 146
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 147 HCRLQKCLAVGMSRDAVK 164
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ VYTC+ D C IDK RN+C+ C
Sbjct: 146 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKD----CLIDKRQRNRCQYC 201
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 202 RYQKCLAMGMKRE 214
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 106 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 161
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 162 RYQKCLAMGMKRE 174
>gi|268564979|ref|XP_002639292.1| C. briggsae CBR-NHR-62 protein [Caenorhabditis briggsae]
Length = 487
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K HRN
Sbjct: 67 VNLICVVCGDQAFGKHYGVNACNGCKGFFRRSVWNNRQYLCR----FEGRCAIAKEHRNV 122
Query: 74 CRACRLNKCFMSAMN 88
CRACRL +CF++ MN
Sbjct: 123 CRACRLKQCFVAGMN 137
>gi|62859085|ref|NP_001016207.1| nuclear receptor subfamily 2 group C member 1 [Xenopus (Silurana)
tropicalis]
gi|123892381|sp|Q28CK1.1|NR2C1_XENTR RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Developmental orphan receptor 2;
Short=DOR2; AltName: Full=Orphan nuclear receptor TR2;
AltName: Full=Testicular receptor 2
gi|89268137|emb|CAJ83740.1| nuclear receptor subfamily 2, group C, member 1; orphan receptor,
TR2-11; nuclear receptor subfamily 2, group H, member 1;
developmental orphan receptor 2 [Xenopus (Silurana)
tropicalis]
gi|114108029|gb|AAI23035.1| nr2c1 protein [Xenopus (Silurana) tropicalis]
Length = 636
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 5/88 (5%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
D +L +L+++ C VCGD++SG+HYG +C+GC GFFKRSI +N VYTC+ D C
Sbjct: 141 DQNLNKQLVEL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKD----CV 195
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKDDFK 93
I+K +RN+C+ CRL +C M +D +
Sbjct: 196 INKHYRNRCQYCRLQRCIALGMKQDSVQ 223
>gi|449279574|gb|EMC87146.1| Nuclear receptor ROR-beta, partial [Columba livia]
Length = 466
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 9 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRN----CLIDRTNRNRCQ 64
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 65 HCRLQKCLALGMSRDAVK 82
>gi|197098516|ref|NP_001127276.1| nuclear receptor subfamily 2 group C member 1 [Pongo abelii]
gi|75061946|sp|Q5RCZ5.1|NR2C1_PONAB RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|55727212|emb|CAH90362.1| hypothetical protein [Pongo abelii]
Length = 601
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|345323218|ref|XP_001506671.2| PREDICTED: nuclear receptor ROR-beta [Ornithorhynchus anatinus]
Length = 688
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 237 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 292
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 293 HCRLQKCLALGMSRDAVK 310
>gi|344236487|gb|EGV92590.1| Nuclear receptor ROR-alpha [Cricetulus griseus]
Length = 959
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 13 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 68
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 69 HCRLQKCLAVGMSRDAVK 86
>gi|332221160|ref|XP_003259729.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Nomascus
leucogenys]
Length = 604
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGLNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|426331479|ref|XP_004026708.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Gorilla gorilla
gorilla]
Length = 518
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|402856160|ref|XP_003892665.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Papio anubis]
Length = 518
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 16 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 71
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 72 RYQKCLVMGMKRE 84
>gi|327276463|ref|XP_003222989.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Anolis
carolinensis]
Length = 451
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 124 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 179
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 180 RYQKCLAMGMKRE 192
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 162 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 217
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 218 RYQKCLAMGMKRE 230
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 16 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 71
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 72 RYQKCLVMGMKRE 84
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 16 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 71
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 72 RYQKCLVMGMKRE 84
>gi|426331477|ref|XP_004026707.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Gorilla gorilla
gorilla]
Length = 497
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|403302650|ref|XP_003941967.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Saimiri
boliviensis boliviensis]
Length = 518
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|383420563|gb|AFH33495.1| nuclear receptor ROR-gamma isoform b [Macaca mulatta]
Length = 497
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|417411185|gb|JAA52038.1| Putative steroid hormone nuclear receptor, partial [Desmodus
rotundus]
Length = 495
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 6 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 61
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 62 HCRLKKCLALGMSRDAVK 79
>gi|341892635|gb|EGT48570.1| CBN-NHR-236 protein [Caenorhabditis brenneri]
Length = 284
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 52/73 (71%), Gaps = 6/73 (8%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCK-AQGDLKGHCPIDKTHRNQCRA 76
C+VCGDR+SG+HYG+ SCDGC GFFKRSI RN YTCK QG C +D RNQC+A
Sbjct: 12 CRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYTCKEGQG-----CVVDVVRRNQCQA 66
Query: 77 CRLNKCFMSAMNK 89
CR KC +MN+
Sbjct: 67 CRFQKCLAVSMNR 79
>gi|18157523|dbj|BAB83838.1| RXRB [Oryzias latipes]
Length = 427
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C +DK RN+C+ C
Sbjct: 93 CSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CTVDKRQRNRCQYC 148
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 149 RYQKCLAMGMKRE 161
>gi|19743909|ref|NP_005051.2| nuclear receptor ROR-gamma isoform a [Homo sapiens]
gi|49066040|sp|P51449.2|RORG_HUMAN RecName: Full=Nuclear receptor ROR-gamma; AltName: Full=Nuclear
receptor RZR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group F member 3; AltName:
Full=Retinoid-related orphan receptor-gamma
gi|21594880|gb|AAH31554.1| RAR-related orphan receptor C [Homo sapiens]
gi|48146989|emb|CAG33717.1| RORC [Homo sapiens]
gi|83405146|gb|AAI10572.1| RAR-related orphan receptor C [Homo sapiens]
gi|123979804|gb|ABM81731.1| RAR-related orphan receptor C [synthetic construct]
gi|123994569|gb|ABM84886.1| RAR-related orphan receptor C [synthetic construct]
Length = 518
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ VYTC+ D C IDK RN+C+ C
Sbjct: 144 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDTKD----CLIDKRQRNRCQYC 199
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 200 RYQKCLAMGMKRE 212
>gi|402874468|ref|XP_003901059.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Papio anubis]
Length = 515
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 63 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 118
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 119 HCRLQKCLAVGMSRDAVK 136
>gi|397515460|ref|XP_003827969.1| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Pan paniscus]
Length = 516
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 64 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 119
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 120 HCRLQKCLAVGMSRDAVK 137
>gi|395746802|ref|XP_003778512.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Pongo abelii]
Length = 516
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 64 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 119
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 120 HCRLQKCLAVGMSRDAVK 137
>gi|4506577|ref|NP_002934.1| nuclear receptor ROR-alpha isoform c [Homo sapiens]
gi|451568|gb|AAA62660.1| RORalpha3 [Homo sapiens]
gi|119598001|gb|EAW77595.1| RAR-related orphan receptor A, isoform CRA_c [Homo sapiens]
Length = 548
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 96 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 151
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 152 HCRLQKCLAVGMSRDAVK 169
>gi|1710719|sp|P51128.1|RXRA_XENLA RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
Length = 488
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 161 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKD----CMIDKRQRNRCQYC 216
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 217 RYQKCLAMGMKRE 229
>gi|297279993|ref|XP_002801827.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 4 [Macaca
mulatta]
Length = 497
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|224062295|ref|XP_002195185.1| PREDICTED: nuclear receptor ROR-alpha [Taeniopygia guttata]
Length = 524
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 72 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 127
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 128 HCRLQKCLAVGMSRDAVK 145
>gi|195571509|ref|XP_002103745.1| GD18809 [Drosophila simulans]
gi|194199672|gb|EDX13248.1| GD18809 [Drosophila simulans]
Length = 680
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 193 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 248
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 249 RNQCQYCRLKKCLKMGMRRE 268
>gi|62897835|dbj|BAD96857.1| RAR-related orphan receptor C isoform a variant [Homo sapiens]
Length = 518
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|48255918|ref|NP_001001523.1| nuclear receptor ROR-gamma isoform b [Homo sapiens]
gi|21739737|emb|CAD38900.1| hypothetical protein [Homo sapiens]
gi|117646452|emb|CAL38693.1| hypothetical protein [synthetic construct]
gi|325495479|gb|ADZ17345.1| RAR-related orphan nuclear receptor variant 2 [Homo sapiens]
Length = 497
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|332220315|ref|XP_003259302.1| PREDICTED: nuclear receptor ROR-gamma [Nomascus leucogenys]
Length = 497
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|397515466|ref|XP_003827972.1| PREDICTED: nuclear receptor ROR-alpha isoform 4 [Pan paniscus]
Length = 525
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 73 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 128
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 129 HCRLQKCLAVGMSRDAVK 146
>gi|426331483|ref|XP_004026710.1| PREDICTED: nuclear receptor ROR-gamma isoform 4 [Gorilla gorilla
gorilla]
Length = 572
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 138
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 139 HCRLQKCLALGMSRDAVK 156
>gi|402856162|ref|XP_003892666.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Papio anubis]
Length = 497
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|383420561|gb|AFH33494.1| nuclear receptor ROR-gamma isoform b [Macaca mulatta]
Length = 497
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|297279991|ref|XP_002801826.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 3 [Macaca
mulatta]
Length = 506
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|193783650|dbj|BAG53561.1| unnamed protein product [Homo sapiens]
Length = 497
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|189055044|dbj|BAG38028.1| unnamed protein product [Homo sapiens]
Length = 518
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|2780196|emb|CAA11109.1| retinoic acid X receptor gamma-1 [Rattus norvegicus]
Length = 322
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 60 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 115
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 116 RYQKCLVMGMKRE 128
>gi|10198055|gb|AAG15162.1| nuclear receptor NHR-62 [Caenorhabditis elegans]
Length = 454
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K HRN
Sbjct: 33 INLVCVVCGDQAFGKHYGVNACNGCKGFFRRSVWHNRQYLCR----FEGRCAIAKEHRNV 88
Query: 74 CRACRLNKCFMSAMN 88
CRACRL +CF++ MN
Sbjct: 89 CRACRLKQCFVAGMN 103
>gi|426331481|ref|XP_004026709.1| PREDICTED: nuclear receptor ROR-gamma isoform 3 [Gorilla gorilla
gorilla]
Length = 506
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ VYTC+ D C IDK RN+C+ C
Sbjct: 146 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKD----CLIDKRQRNRCQYC 201
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 202 RYQKCLAMGMKRE 214
>gi|355745653|gb|EHH50278.1| hypothetical protein EGM_01084 [Macaca fascicularis]
Length = 572
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 138
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 139 HCRLQKCLALGMSRDAVK 156
>gi|332840362|ref|XP_003313976.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Pan troglodytes]
gi|397473628|ref|XP_003808308.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Pan paniscus]
Length = 484
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 9/97 (9%)
Query: 1 MNVGTDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 56
M + TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY C+
Sbjct: 94 MQLLTDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYACRG 152
Query: 57 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
D C I+K HRN+C+ CRL +C M +D +
Sbjct: 153 SKD----CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|297279987|ref|XP_002801824.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 1 [Macaca
mulatta]
gi|355558432|gb|EHH15212.1| hypothetical protein EGK_01272 [Macaca mulatta]
Length = 572
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 138
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 139 HCRLQKCLALGMSRDAVK 156
>gi|194391110|dbj|BAG60673.1| unnamed protein product [Homo sapiens]
Length = 572
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 138
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 139 HCRLQKCLALGMSRDAVK 156
>gi|311256682|ref|XP_003126756.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like [Sus
scrofa]
Length = 605
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS + + D+ C VCGDR+SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSASEQGPNKGFDL-CVVCGDRASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|410049253|ref|XP_003952715.1| PREDICTED: nuclear receptor ROR-alpha [Pan troglodytes]
Length = 493
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 96
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 97 HCRLQKCLAVGMSRDAVK 114
>gi|281340400|gb|EFB15984.1| hypothetical protein PANDA_007909 [Ailuropoda melanoleuca]
Length = 587
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 80 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 137
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 138 ---CIINKHHRNRCQYCRLQRCIAFGMRQDSVQ 167
>gi|117646568|emb|CAL38751.1| hypothetical protein [synthetic construct]
Length = 497
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSRRCNAAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|397492734|ref|XP_003817275.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Pan paniscus]
Length = 518
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|130493601|ref|NP_001076288.1| RAR-related orphan receptor C a [Danio rerio]
gi|126508457|gb|ABO15414.1| retinoid-related orphan receptor c [Danio rerio]
Length = 479
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N +Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN----CIIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|432883656|ref|XP_004074314.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 465
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C +DK RN+C+ C
Sbjct: 127 CSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CTVDKRQRNRCQYC 182
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 183 RYQKCLAMGMKRE 195
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 141 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 196
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 197 RYQKCLAMGMKRE 209
>gi|358414696|ref|XP_887036.4| PREDICTED: retinoic acid receptor RXR-alpha isoform 4 [Bos taurus]
Length = 557
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 230 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 285
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 286 RYQKCLAMGMKRE 298
>gi|403302652|ref|XP_003941968.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Saimiri
boliviensis boliviensis]
Length = 506
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|332810305|ref|XP_003308437.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Pan troglodytes]
gi|397492732|ref|XP_003817274.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Pan paniscus]
Length = 497
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|332810303|ref|XP_003308436.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Pan troglodytes]
Length = 518
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|216409700|dbj|BAH02287.1| retinoid-related orphan receptor gamma [Homo sapiens]
Length = 506
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|118343826|ref|NP_001071735.1| nuclear receptor [Ciona intestinalis]
gi|70569867|dbj|BAE06492.1| nuclear receptor [Ciona intestinalis]
Length = 512
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N Y C+ +C +DK RNQCR C
Sbjct: 108 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYQCR----FSRNCTVDKDKRNQCRYC 163
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M ++
Sbjct: 164 RLRKCFRAGMKRE 176
>gi|397492738|ref|XP_003817277.1| PREDICTED: nuclear receptor ROR-gamma isoform 4 [Pan paniscus]
Length = 572
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 138
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 139 HCRLQKCLALGMSRDAVK 156
>gi|397492736|ref|XP_003817276.1| PREDICTED: nuclear receptor ROR-gamma isoform 3 [Pan paniscus]
Length = 506
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|332810309|ref|XP_003308439.1| PREDICTED: nuclear receptor ROR-gamma isoform 4 [Pan troglodytes]
Length = 572
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 138
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 139 HCRLQKCLALGMSRDAVK 156
>gi|332810307|ref|XP_003308438.1| PREDICTED: nuclear receptor ROR-gamma isoform 3 [Pan troglodytes]
Length = 506
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|47229684|emb|CAG06880.1| unnamed protein product [Tetraodon nigroviridis]
Length = 621
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDD 91
CRL KC M++D+
Sbjct: 64 HCRLQKCLALGMSRDE 79
>gi|395746808|ref|XP_003778514.1| PREDICTED: nuclear receptor ROR-alpha isoform 4 [Pongo abelii]
Length = 525
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 73 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 128
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 129 HCRLQKCLAVGMSRDAVK 146
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 132 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKD----CMIDKRQRNRCQYC 187
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 188 RYQKCLAMGMKRE 200
>gi|395746806|ref|XP_003778513.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Pongo abelii]
Length = 493
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 96
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 97 HCRLQKCLAVGMSRDAVK 114
>gi|358338345|dbj|GAA56711.1| retinoic acid receptor RXR-alpha [Clonorchis sinensis]
Length = 675
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR+SG+HYG+ SC+GC GFFKR++ + Y C+ GD CP+D+ R +C+AC
Sbjct: 261 CVICGDRASGRHYGVVSCEGCKGFFKRTVRKQVQYVCRGSGD----CPVDRRKRTRCQAC 316
Query: 78 RLNKCFMSAMNKD 90
R ++C + M ++
Sbjct: 317 RYDRCILKGMKRE 329
>gi|348516240|ref|XP_003445647.1| PREDICTED: nuclear receptor ROR-beta [Oreochromis niloticus]
Length = 481
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 17 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 72
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 73 HCRLQKCLALGMSRDAVK 90
>gi|444515066|gb|ELV10728.1| Nuclear receptor ROR-gamma [Tupaia chinensis]
Length = 696
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS + Y+C Q + CPID+T RN+C+
Sbjct: 193 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCSVAYSCTRQQN----CPIDRTSRNRCQ 248
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 249 HCRLQKCLALGMSRDAVK 266
>gi|426224304|ref|XP_004006312.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Ovis
aries]
Length = 608
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS + ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSSEQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|397515464|ref|XP_003827971.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Pan paniscus]
gi|426379297|ref|XP_004056337.1| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Gorilla gorilla
gorilla]
Length = 493
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 96
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 97 HCRLQKCLAVGMSRDAVK 114
>gi|426379299|ref|XP_004056338.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Gorilla gorilla
gorilla]
Length = 525
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 73 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 128
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 129 HCRLQKCLAVGMSRDAVK 146
>gi|395536025|ref|XP_003770021.1| PREDICTED: nuclear receptor ROR-gamma [Sarcophilus harrisii]
Length = 497
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQS----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|296487946|tpg|DAA30059.1| TPA: nuclear receptor subfamily 2, group C, member 1 [Bos taurus]
Length = 608
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS + ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSSEQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|344254648|gb|EGW10752.1| Nuclear receptor ROR-gamma [Cricetulus griseus]
Length = 341
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 23 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 78
Query: 76 ACRLNKCFMSAMNKDDF 92
CRL KC M++D++
Sbjct: 79 HCRLQKCLALGMSRDEY 95
>gi|113197752|gb|AAI21596.1| LOC779621 protein [Xenopus (Silurana) tropicalis]
Length = 452
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ VYTC+ D C IDK RN+C+ C
Sbjct: 129 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDTKD----CLIDKRQRNRCQYC 184
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 185 RYQKCLAMGMKRE 197
>gi|390335482|ref|XP_003724162.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
1 [Strongylocentrotus purpuratus]
gi|390335484|ref|XP_782295.3| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
2 [Strongylocentrotus purpuratus]
Length = 472
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VC D+SSGKHYG ++C+GC FFKRS+ RN Y+C+A + CPID+ HRNQC+
Sbjct: 139 IECVVCHDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRN----CPIDQHHRNQCQ 194
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 195 YCRLKKCLKMGMRRE 209
>gi|313226358|emb|CBY21502.1| unnamed protein product [Oikopleura dioica]
Length = 472
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG +SCDGC GFF+RSI +N Y C+ + D C I++ +RN CR C
Sbjct: 80 CAICGDRATGKHYGAHSCDGCKGFFRRSIRKNHSYQCRRERD----CTIERANRNSCRHC 135
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M ++
Sbjct: 136 RLIKCFRAGMRRE 148
>gi|268580289|ref|XP_002645127.1| C. briggsae CBR-NHR-236 protein [Caenorhabditis briggsae]
Length = 299
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C+VCGDR+SG+HYG+ SCDGC GFFKRSI RN YTCK C ID RNQC++C
Sbjct: 12 CRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYTCKE----AKRCVIDVVRRNQCQSC 67
Query: 78 RLNKCFMSAMNK 89
R KC +MN+
Sbjct: 68 RFQKCLAVSMNR 79
>gi|338725065|ref|XP_001916080.2| PREDICTED: nuclear receptor ROR-gamma [Equus caballus]
Length = 518
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|441616023|ref|XP_004088336.1| PREDICTED: nuclear receptor ROR-alpha [Nomascus leucogenys]
Length = 493
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 96
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 97 HCRLQKCLAVGMSRDAVK 114
>gi|440892538|gb|ELR45692.1| Nuclear receptor subfamily 2 group C member 1 [Bos grunniens mutus]
Length = 618
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS + ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSSEQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|363743762|ref|XP_003642912.1| PREDICTED: nuclear receptor ROR-beta-like [Gallus gallus]
Length = 540
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 83 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRN----CLIDRTNRNRCQ 138
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 139 HCRLQKCLALGMSRDAVK 156
>gi|296481981|tpg|DAA24096.1| TPA: retinoid X receptor, alpha [Bos taurus]
Length = 404
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 75 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 130
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 131 RYQKCLAMGMKRE 143
>gi|343960182|dbj|BAK63945.1| nuclear receptor ROR-alpha [Pan troglodytes]
Length = 493
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 96
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 97 HCRLQKCLAVGMSRDAVK 114
>gi|327263554|ref|XP_003216584.1| PREDICTED: nuclear receptor ROR-beta-like [Anolis carolinensis]
Length = 540
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 89 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 144
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 145 HCRLQKCLALGMSRDAVK 162
>gi|118344424|ref|NP_001072033.1| nuclear receptor [Ciona intestinalis]
gi|70569872|dbj|BAE06493.1| nuclear receptor [Ciona intestinalis]
Length = 464
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N Y C+ +C +DK RNQCR C
Sbjct: 60 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYQCR----FSRNCTVDKDKRNQCRYC 115
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M ++
Sbjct: 116 RLRKCFRAGMKRE 128
>gi|62122587|dbj|BAD93255.1| RXRB [Oryzias latipes]
Length = 427
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C +DK RN+C+ C
Sbjct: 93 CSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CTVDKRQRNRCQYC 148
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 149 RYQKCLAMGMKRE 161
>gi|410903442|ref|XP_003965202.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Takifugu
rubripes]
Length = 447
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
GT SL + C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D
Sbjct: 110 GTSLSLSKHI----CTICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD---- 161
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
C IDK RN+C+ CR KC M ++
Sbjct: 162 CVIDKRQRNRCQYCRYQKCLAMGMKRE 188
>gi|332840364|ref|XP_003313977.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 3
[Pan troglodytes]
Length = 468
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 9/97 (9%)
Query: 1 MNVGTDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 56
M + TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY C+
Sbjct: 94 MQLLTDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYACRG 152
Query: 57 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
D C I+K HRN+C+ CRL +C M +D +
Sbjct: 153 SKD----CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|194206592|ref|XP_001918176.1| PREDICTED: nuclear receptor ROR-alpha-like [Equus caballus]
Length = 839
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 387 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 442
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 443 HCRLQKCLAVGMSRDAVK 460
>gi|332235835|ref|XP_003267110.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Nomascus
leucogenys]
Length = 525
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 73 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 128
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 129 HCRLQKCLAVGMSRDAVK 146
>gi|130490232|ref|NP_001076325.1| nuclear receptor ROR-beta [Danio rerio]
gi|126508455|gb|ABO15413.1| retinoid-related orphan receptor b [Danio rerio]
Length = 466
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|83318203|gb|AAI08461.1| Rxrb-a protein [Xenopus laevis]
Length = 458
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ YTC+ D C +DK RN+C+ C
Sbjct: 137 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKD----CIVDKRQRNRCQYC 192
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 193 RYQKCLATGMKRE 205
>gi|338721159|ref|XP_003364318.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Equus
caballus]
Length = 485
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|338721157|ref|XP_003364317.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Equus
caballus]
Length = 497
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 451
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ YTC+ D C +DK RN+C+ C
Sbjct: 130 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKD----CIVDKRQRNRCQYC 185
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 186 RYQKCLATGMKRE 198
>gi|348504636|ref|XP_003439867.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 2
[Oreochromis niloticus]
Length = 407
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ + CPIDK RN+C+ C
Sbjct: 83 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKE----CPIDKRQRNRCQYC 138
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 139 RYQKCLAMGMKRE 151
>gi|281352860|gb|EFB28444.1| hypothetical protein PANDA_007975 [Ailuropoda melanoleuca]
Length = 494
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS + VY+C Q + CPID+T RN+C+
Sbjct: 5 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCHVVYSCTRQQN----CPIDRTSRNRCQ 60
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 61 HCRLQKCLALGMSRDAVK 78
>gi|449266386|gb|EMC77439.1| Nuclear receptor ROR-alpha, partial [Columba livia]
Length = 468
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 72 HCRLQKCLAVGMSRDAVK 89
>gi|348555499|ref|XP_003463561.1| PREDICTED: nuclear receptor ROR-alpha [Cavia porcellus]
Length = 478
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 26 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 81
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 82 HCRLQKCLAVGMSRDAVK 99
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ YTC+ D C IDK RN+C+ C
Sbjct: 117 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKD----CQIDKRQRNRCQYC 172
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 173 RYQKCLAMGMKRE 185
>gi|351712230|gb|EHB15149.1| Nuclear receptor subfamily 2 group C member 1 [Heterocephalus
glaber]
Length = 606
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TD+S D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 99 TDSSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 156
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 157 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 186
>gi|260809813|ref|XP_002599699.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
gi|229284980|gb|EEN55711.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
Length = 632
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD++SG+HYG SC+GC GFFKRSI +N Y C++ + CPI+K HRN+C+ C
Sbjct: 147 CVVCGDKASGRHYGAISCEGCKGFFKRSIRKNLGYVCRSSKE----CPINKHHRNRCQYC 202
Query: 78 RLNKCFMSAMNKDDFK 93
RL KC M + +
Sbjct: 203 RLQKCLSVGMRSESVQ 218
>gi|260806090|ref|XP_002597918.1| hypothetical protein BRAFLDRAFT_174225 [Branchiostoma floridae]
gi|229283187|gb|EEN53930.1| hypothetical protein BRAFLDRAFT_174225 [Branchiostoma floridae]
Length = 526
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 4/82 (4%)
Query: 9 LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDK 68
L ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C + C ID+
Sbjct: 1 LSAQIETIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAAYSCPRNKN----CQIDR 56
Query: 69 THRNQCRACRLNKCFMSAMNKD 90
T+RN+C+ CRL KC M++D
Sbjct: 57 TNRNRCQHCRLQKCLALGMSRD 78
>gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 458
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ YTC+ D C +DK RN+C+ C
Sbjct: 137 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKD----CIVDKRQRNRCQYC 192
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 193 RYQKCLATGMKRE 205
>gi|348541131|ref|XP_003458040.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 2 [Oreochromis
niloticus]
Length = 462
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C +DK RN+C+ C
Sbjct: 126 CSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CTVDKRQRNRCQYC 181
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 182 RYQKCLAMGMKRE 194
>gi|297263280|ref|XP_002798778.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
isoform 2 [Macaca mulatta]
Length = 483
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|189532981|ref|XP_690743.3| PREDICTED: nuclear receptor ROR-beta [Danio rerio]
Length = 480
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N +Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|148709623|gb|EDL41569.1| RAR-related orphan receptor beta, isoform CRA_a [Mus musculus]
Length = 474
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 59/89 (66%), Gaps = 4/89 (4%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
T S+ ++ IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C
Sbjct: 12 TRRSIKAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----C 67
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
ID+T+RN+C+ CRL KC M++D K
Sbjct: 68 LIDRTNRNRCQHCRLQKCLALGMSRDAVK 96
>gi|327272700|ref|XP_003221122.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Anolis carolinensis]
Length = 641
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/89 (46%), Positives = 61/89 (68%), Gaps = 6/89 (6%)
Query: 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHC 64
T+ +L +++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C
Sbjct: 139 TEQTL-NKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGTRD----C 192
Query: 65 PIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
I+K HRN+C+ CRL +C M +D +
Sbjct: 193 VINKHHRNRCQYCRLQRCIAFGMKQDSVQ 221
>gi|345795020|ref|XP_535503.3| PREDICTED: nuclear receptor ROR-alpha [Canis lupus familiaris]
Length = 523
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 71 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 126
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 127 HCRLQKCLAVGMSRDAVK 144
>gi|118344280|ref|NP_001071962.1| nuclear receptor [Ciona intestinalis]
gi|70571053|dbj|BAE06670.1| nuclear receptor [Ciona intestinalis]
Length = 597
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/82 (53%), Positives = 56/82 (68%), Gaps = 5/82 (6%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY-TCKAQGDLKGHCPIDKTHR 71
LLD+PCKVCGD+SSG HYG+YSC+GC GFF+R+IH+ Y +C L C I K +R
Sbjct: 42 LLDMPCKVCGDKSSGVHYGVYSCEGCKGFFRRTIHQKIKYRSCI----LDRTCSITKINR 97
Query: 72 NQCRACRLNKCFMSAMNKDDFK 93
N+C+ CR KC M+KD K
Sbjct: 98 NRCQTCRFMKCLYVGMSKDAVK 119
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 59 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 114
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 115 RYQKCLAMGMKRE 127
>gi|297279989|ref|XP_002801825.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 2 [Macaca
mulatta]
Length = 574
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 85 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 140
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 141 HCRLQKCLALGMSRDAVK 158
>gi|440906746|gb|ELR56975.1| Nuclear receptor ROR-gamma, partial [Bos grunniens mutus]
Length = 495
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 6 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 61
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 62 HCRLQKCLALGMSRDAVK 79
>gi|148230344|ref|NP_001080936.1| retinoid X receptor, beta [Xenopus laevis]
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis]
Length = 412
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ YTC+ D C +DK RN+C+ C
Sbjct: 91 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKD----CIVDKRQRNRCQYC 146
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 147 RYQKCLATGMKRE 159
>gi|410979449|ref|XP_003996096.1| PREDICTED: retinoic acid receptor RXR-alpha [Felis catus]
Length = 527
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 200 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 255
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 256 RYQKCLAMGMKRE 268
>gi|215539467|gb|AAI69986.1| Rxrb-a protein [Xenopus laevis]
Length = 445
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ YTC+ D C +DK RN+C+ C
Sbjct: 124 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKD----CIVDKRQRNRCQYC 179
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 180 RYQKCLATGMKRE 192
>gi|354501846|ref|XP_003512999.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Cricetulus
griseus]
Length = 500
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|354501844|ref|XP_003512998.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Cricetulus
griseus]
Length = 521
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|348586379|ref|XP_003478946.1| PREDICTED: nuclear receptor ROR-gamma-like [Cavia porcellus]
Length = 620
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS + VY+C Q + CPID+T RN+C+
Sbjct: 131 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCHVVYSCTRQQN----CPIDRTSRNRCQ 186
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 187 HCRLQKCLALGMSRDAVK 204
>gi|134085669|ref|NP_001076920.1| nuclear receptor ROR-gamma [Bos taurus]
gi|126513271|gb|ABO15740.1| RAR-related orphan receptor C [Bos taurus]
Length = 506
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|4186077|emb|CAA10661.1| ROR gamma T protein [Mus musculus]
Length = 495
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|1710639|sp|P51450.1|RORG_MOUSE RecName: Full=Nuclear receptor ROR-gamma; AltName: Full=Nuclear
receptor RZR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group F member 3; AltName:
Full=Retinoid-related orphan receptor-gamma; AltName:
Full=Thymus orphan receptor; Short=TOR
gi|1155341|gb|AAB40709.1| RORgamma orphan nuclear receptor [Mus musculus]
gi|2674083|gb|AAC53501.1| nuclear orphan receptor RORgamma [Mus musculus]
Length = 516
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|5679307|gb|AAD46913.1|AF163668_1 RORgamma t [Mus musculus]
Length = 495
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|378705844|gb|AFC34774.1| RORgamma2 [Ctenopharyngodon idella]
Length = 486
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N +Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|355707882|gb|AES03094.1| nuclear receptor subfamily 2, group C, member 1 [Mustela putorius
furo]
Length = 451
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSQDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMRQDSVQ 185
>gi|358333531|dbj|GAA52025.1| nuclear receptor subfamily 2 group F member 5 [Clonorchis sinensis]
Length = 972
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
++ C VCGD+SSGKHYG ++C+GC FFKRS+ R YTC+ CPID HRNQC
Sbjct: 256 NVECVVCGDKSSGKHYGQHTCEGCKSFFKRSVRRKLTYTCRG----TRQCPIDVHHRNQC 311
Query: 75 RACRLNKCFMSAMNKD 90
+ CR KC + M K+
Sbjct: 312 QYCRFQKCVRAGMRKE 327
>gi|119573790|gb|EAW53405.1| RAR-related orphan receptor C, isoform CRA_a [Homo sapiens]
gi|119573791|gb|EAW53406.1| RAR-related orphan receptor C, isoform CRA_a [Homo sapiens]
Length = 574
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 85 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 140
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 141 HCRLQKCLALGMSRDAVK 158
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 38 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CVIDKRQRNRCQYC 93
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 94 RYQKCLAMGMKRE 106
>gi|440899103|gb|ELR50468.1| Nuclear receptor ROR-alpha, partial [Bos grunniens mutus]
Length = 468
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 72 HCRLQKCLAVGMSRDAVK 89
>gi|301775172|ref|XP_002923008.1| PREDICTED: nuclear receptor ROR-alpha-like [Ailuropoda melanoleuca]
Length = 509
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 57 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 112
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 113 HCRLQKCLAVGMSRDAVK 130
>gi|50539758|ref|NP_001002345.1| retinoic acid receptor RXR-gamma-B [Danio rerio]
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-B;
AltName: Full=Retinoid X receptor gamma-B
gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio]
gi|124054092|gb|ABM89230.1| retinoid X receptor gamma b [Danio rerio]
Length = 452
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ YTC+ D+K C IDK RN+C+ C
Sbjct: 128 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCR---DIK-ECLIDKRQRNRCQYC 183
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 184 RYQKCLAMGMKRE 196
>gi|324507366|gb|ADY43127.1| Nuclear hormone receptor family member nhr-91 [Ascaris suum]
Length = 658
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 5 TDNSLGDRLLDIP--CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKG 62
T + D L D P C +CGD+SSG HYGIY+C+GC GFFKR++ RVYTC +
Sbjct: 189 TSALMADYLDDDPLLCSICGDKSSGLHYGIYTCEGCKGFFKRTVQNKRVYTCVSG---TA 245
Query: 63 HCPIDKTHRNQCRACRLNKCFMSAM 87
CP+ K RN+C+ CR KC M
Sbjct: 246 SCPMTKEQRNRCQYCRFQKCLQQGM 270
>gi|297296572|ref|XP_001100971.2| PREDICTED: nuclear receptor ROR-alpha-like isoform 2 [Macaca
mulatta]
Length = 468
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 72 HCRLQKCLAVGMSRDAVK 89
>gi|19743905|ref|NP_599024.1| nuclear receptor ROR-alpha isoform d [Homo sapiens]
gi|335279592|ref|XP_001928189.3| PREDICTED: nuclear receptor ROR-alpha [Sus scrofa]
gi|71680298|gb|AAI00990.1| RAR-related orphan receptor A [Homo sapiens]
gi|71681741|gb|AAI00989.1| RAR-related orphan receptor A [Homo sapiens]
gi|72533311|gb|AAI00988.1| RAR-related orphan receptor A [Homo sapiens]
gi|72533486|gb|AAI00991.1| RAR-related orphan receptor A [Homo sapiens]
gi|119598000|gb|EAW77594.1| RAR-related orphan receptor A, isoform CRA_b [Homo sapiens]
gi|325495447|gb|ADZ17329.1| thyroid hormone nuclear receptor alpha variant 4 [Homo sapiens]
gi|410218696|gb|JAA06567.1| RAR-related orphan receptor A [Pan troglodytes]
gi|410255712|gb|JAA15823.1| RAR-related orphan receptor A [Pan troglodytes]
gi|410306084|gb|JAA31642.1| RAR-related orphan receptor A [Pan troglodytes]
gi|410352249|gb|JAA42728.1| RAR-related orphan receptor A [Pan troglodytes]
Length = 468
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 72 HCRLQKCLAVGMSRDAVK 89
>gi|1869971|emb|CAB05396.1| nuclear orphan receptor/transcription factor [Mus musculus]
gi|74143434|dbj|BAE28797.1| unnamed protein product [Mus musculus]
gi|74214884|dbj|BAE33451.1| unnamed protein product [Mus musculus]
Length = 467
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 15 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 70
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 71 HCRLQKCLAVGMSRDAVK 88
>gi|348241|gb|AAA02963.1| transcription factor [Homo sapiens]
Length = 468
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 72 HCRLQKCLAVGMSRDAVK 89
>gi|402874466|ref|XP_003901058.1| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Papio anubis]
Length = 468
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 72 HCRLQKCLAVGMSRDAVK 89
>gi|281347428|gb|EFB23012.1| hypothetical protein PANDA_012073 [Ailuropoda melanoleuca]
Length = 546
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 94 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 149
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 150 HCRLQKCLAVGMSRDAVK 167
>gi|296213374|ref|XP_002753242.1| PREDICTED: nuclear receptor ROR-alpha [Callithrix jacchus]
Length = 468
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 72 HCRLQKCLAVGMSRDAVK 89
>gi|2570170|dbj|BAA22970.1| mROR4 [Mus caroli]
gi|9653297|gb|AAB46801.2| orphan nuclear receptor [Mus sp.]
Length = 466
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 15 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 70
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 71 HCRLQKCLAVGMSRDAVK 88
>gi|344293479|ref|XP_003418450.1| PREDICTED: nuclear receptor ROR-alpha-like [Loxodonta africana]
Length = 496
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 44 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 99
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 100 HCRLQKCLAVGMSRDAVK 117
>gi|325495551|gb|ADZ17381.1| thyroid hormone nuclear receptor alpha [Homo sapiens]
Length = 467
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 72 HCRLQKCLAVGMSRDAVK 89
>gi|315360629|ref|NP_001186755.1| RAR-related orphan receptor gamma 2 [Oncorhynchus mykiss]
gi|313760286|emb|CAT65102.1| RAR-related orphan receptor gamma 2 protein [Oncorhynchus mykiss]
Length = 469
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N +Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|432874724|ref|XP_004072561.1| PREDICTED: nuclear receptor ROR-beta-like [Oryzias latipes]
Length = 472
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|73586751|gb|AAI03030.1| RORC protein [Bos taurus]
Length = 530
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 96
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 97 HCRLQKCLALGMSRDAVK 114
>gi|74213690|dbj|BAE35645.1| unnamed protein product [Mus musculus]
Length = 516
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|296489562|tpg|DAA31675.1| TPA: RAR-related orphan receptor C [Bos taurus]
Length = 506
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|410961130|ref|XP_003987138.1| PREDICTED: nuclear receptor ROR-alpha [Felis catus]
Length = 493
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 41 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 96
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 97 HCRLQKCLAVGMSRDAVK 114
>gi|426218929|ref|XP_004003687.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor ROR-gamma [Ovis
aries]
Length = 524
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 9 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 64
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 65 HCRLQKCLALGMSRDAVK 82
>gi|188536040|ref|NP_035411.2| nuclear receptor ROR-gamma [Mus musculus]
gi|15928672|gb|AAH14804.1| RAR-related orphan receptor gamma [Mus musculus]
gi|117616722|gb|ABK42379.1| TOR [synthetic construct]
Length = 516
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 66 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CMIDKRQRNRCQYC 121
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 122 RYQKCLAMGMKRE 134
>gi|1145629|gb|AAB02582.1| orphan receptor TOR [Mus musculus]
Length = 516
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|339887|gb|AAA36761.1| steroid receptor TR2-11 [Homo sapiens]
Length = 603
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 61/92 (66%), Gaps = 8/92 (8%)
Query: 5 TDNSLG---DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
TDNS +++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD-- 154
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 155 --CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 184
>gi|19743903|ref|NP_599023.1| nuclear receptor ROR-alpha isoform a [Homo sapiens]
gi|114657409|ref|XP_001173408.1| PREDICTED: nuclear receptor ROR-alpha isoform 6 [Pan troglodytes]
gi|451564|gb|AAA62658.1| RORalpha1 [Homo sapiens]
gi|14250724|gb|AAH08831.1| RAR-related orphan receptor A [Homo sapiens]
Length = 523
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 71 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 126
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 127 HCRLQKCLAVGMSRDAVK 144
>gi|291402905|ref|XP_002718250.1| PREDICTED: RAR-related orphan receptor A [Oryctolagus cuniculus]
Length = 633
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 181 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 236
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 237 HCRLQKCLAVGMSRDAVK 254
>gi|216409696|dbj|BAH02285.1| retinoid-related orphan receptor alpha [Homo sapiens]
Length = 523
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 71 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 126
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 127 HCRLQKCLAVGMSRDAVK 144
>gi|189442705|gb|AAI67577.1| rxrb protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ YTC+ D C +DK RN+C+ C
Sbjct: 91 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKD----CIVDKRQRNRCQYC 146
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 147 RYQKCLATGMKRE 159
>gi|158256074|dbj|BAF84008.1| unnamed protein product [Homo sapiens]
Length = 603
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 61/92 (66%), Gaps = 8/92 (8%)
Query: 5 TDNSLG---DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
TDNS +++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD-- 154
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 155 --CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 184
>gi|403274571|ref|XP_003929048.1| PREDICTED: nuclear receptor ROR-alpha [Saimiri boliviensis
boliviensis]
Length = 523
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 71 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 126
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 127 HCRLQKCLAVGMSRDAVK 144
>gi|395502591|ref|XP_003755662.1| PREDICTED: nuclear receptor ROR-alpha [Sarcophilus harrisii]
Length = 538
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 86 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 141
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 142 HCRLQKCLAVGMSRDAVK 159
>gi|313233694|emb|CBY09864.1| unnamed protein product [Oikopleura dioica]
Length = 553
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C+VCGDR+SG+HYG+ SC+GC GFFKRSI + YTC+ D CP+ K RN+C+AC
Sbjct: 94 CEVCGDRASGRHYGVKSCEGCKGFFKRSIRKKLNYTCRWNAD----CPVTKLQRNRCQAC 149
Query: 78 RLNKCFMSAMNKDDFK 93
R KC M D +
Sbjct: 150 RFFKCVSVGMRADSVQ 165
>gi|363737943|ref|XP_413763.3| PREDICTED: nuclear receptor ROR-alpha [Gallus gallus]
Length = 524
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 72 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 127
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 128 HCRLQKCLAVGMSRDAVK 145
>gi|300797466|ref|NP_001179790.1| nuclear receptor ROR-alpha [Bos taurus]
gi|296483252|tpg|DAA25367.1| TPA: RAR-related orphan receptor A [Bos taurus]
Length = 523
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 71 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 126
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 127 HCRLQKCLAVGMSRDAVK 144
>gi|189491739|ref|NP_003288.2| nuclear receptor subfamily 2 group C member 1 isoform a [Homo
sapiens]
gi|226693548|sp|P13056.2|NR2C1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2
gi|119617925|gb|EAW97519.1| nuclear receptor subfamily 2, group C, member 1, isoform CRA_c
[Homo sapiens]
gi|307686061|dbj|BAJ20961.1| nuclear receptor subfamily 2, group C, member 1 [synthetic
construct]
gi|381146193|gb|AFF59487.1| testicular nuclear receptor 2 variant 1 [Homo sapiens]
Length = 603
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 61/92 (66%), Gaps = 8/92 (8%)
Query: 5 TDNSLG---DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
TDNS +++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD-- 154
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 155 --CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 184
>gi|224094384|ref|XP_002188160.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Taeniopygia guttata]
Length = 563
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 9/97 (9%)
Query: 1 MNVGTDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKA 56
+ + TDNS + ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+
Sbjct: 53 IQILTDNSPSEQGLNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRG 111
Query: 57 QGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
D C I+K HRN+C+ CRL +C M +D +
Sbjct: 112 TKD----CVINKHHRNRCQYCRLQRCIAFGMKQDSVQ 144
>gi|183637599|gb|ACC64601.1| RAR-related orphan receptor C isoform a (predicted) [Rhinolophus
ferrumequinum]
Length = 517
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS + N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQNCNVAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|348541129|ref|XP_003458039.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C +DK RN+C+ C
Sbjct: 93 CSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CTVDKRQRNRCQYC 148
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 149 RYQKCLAMGMKRE 161
>gi|118150918|ref|NP_001071372.1| nuclear receptor subfamily 2 group C member 1 [Bos taurus]
gi|226733406|sp|A0JNE3.1|NR2C1_BOVIN RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|117306695|gb|AAI26644.1| Nuclear receptor subfamily 2, group C, member 1 [Bos taurus]
Length = 608
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS + ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSSEQGPNKVFDL-CVVCGDKASGRHYGEVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|444720729|gb|ELW61505.1| Nuclear receptor subfamily 2 group C member 1 [Tupaia chinensis]
Length = 606
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ ++ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFEL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|321477464|gb|EFX88423.1| hypothetical protein DAPPUDRAFT_311322 [Daphnia pulex]
Length = 364
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
++ C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CP+D+ HRNQC
Sbjct: 22 NVECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYSCRGNRN----CPVDQHHRNQC 77
Query: 75 RACRLNKCFMSAMNKD 90
+ CRL KC M ++
Sbjct: 78 QYCRLKKCLKMGMRRE 93
>gi|189066517|dbj|BAG35767.1| unnamed protein product [Homo sapiens]
Length = 463
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
KC + M ++
Sbjct: 195 CYQKCLVMGMKRE 207
>gi|410950838|ref|XP_003982110.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Felis
catus]
Length = 263
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 7/94 (7%)
Query: 3 VGTDNSLGDRL---LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD 59
+D GD L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D
Sbjct: 41 AASDAEPGDEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD 100
Query: 60 LKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C ID+ HRNQC+ CRL KCF M K+ +
Sbjct: 101 ----CQIDQHHRNQCQYCRLKKCFRVGMRKEGLR 130
>gi|297263282|ref|XP_001107297.2| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
isoform 1 [Macaca mulatta]
Length = 468
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>gi|196011894|ref|XP_002115810.1| hypothetical protein TRIADDRAFT_50786 [Trichoplax adhaerens]
gi|190581586|gb|EDV21662.1| hypothetical protein TRIADDRAFT_50786 [Trichoplax adhaerens]
Length = 327
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N VYTC+ C IDK RNQCR C
Sbjct: 5 CAICGDRATGKHYGAPSCDGCKGFFRRSVRQNHVYTCR----FGRSCVIDKDKRNQCRYC 60
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 61 RLKKCFRAGMKKE 73
>gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta variant [Homo sapiens]
Length = 577
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ Y+C+ D C +DK RN+C+ C
Sbjct: 245 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKD----CTVDKRQRNRCQYC 300
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 301 RYQKCLATGMKRE 313
>gi|395822270|ref|XP_003784444.1| PREDICTED: nuclear receptor ROR-alpha [Otolemur garnettii]
Length = 523
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 71 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 126
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 127 HCRLQKCLAVGMSRDAVK 144
>gi|354503278|ref|XP_003513708.1| PREDICTED: nuclear receptor ROR-alpha, partial [Cricetulus
griseus]
Length = 473
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 21 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 76
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 77 HCRLQKCLAVGMSRDAVK 94
>gi|124054090|gb|ABM89229.1| retinoid X receptor alpha a [Danio rerio]
Length = 340
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 131 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CVIDKRQRNRCQYC 186
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 187 RYQKCLAMGMKRE 199
>gi|335286927|ref|XP_003355220.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Sus scrofa]
Length = 518
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>gi|335286925|ref|XP_003355219.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Sus scrofa]
Length = 497
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCNVAYSCTRQQN----CPIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|124054167|gb|ABM89275.1| RORC [Pongo pygmaeus]
Length = 442
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 6 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 61
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 62 HCRLQKCLALGMSRDAVK 79
>gi|118343980|ref|NP_001071809.1| nuclear receptor [Ciona intestinalis]
gi|70571095|dbj|BAE06678.1| nuclear receptor [Ciona intestinalis]
Length = 507
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/93 (48%), Positives = 58/93 (62%), Gaps = 8/93 (8%)
Query: 2 NVGTD----NSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQ 57
N+GT+ +S G L C VCGDR+SGKHYG+YSC+GC GFFKR++ + YTC+
Sbjct: 149 NMGTNMFSVSSSGVPLSKHICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKYLTYTCRDD 208
Query: 58 GDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
D C IDK RN+C+ CR KC M K+
Sbjct: 209 KD----CIIDKRQRNRCQYCRYQKCITMGMKKE 237
>gi|295656543|gb|ADG26734.1| tailless protein [Platynereis dumerilii]
Length = 190
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 51/66 (77%), Gaps = 3/66 (4%)
Query: 28 KHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAM 87
+YG+Y+CDGC+GFFKRSI RNR Y CK++ G CP+DKTHRNQCRACRL KC + M
Sbjct: 1 PYYGVYACDGCAGFFKRSIRRNRQYICKSR---NGSCPVDKTHRNQCRACRLKKCLEAGM 57
Query: 88 NKDDFK 93
NKD +
Sbjct: 58 NKDAVQ 63
>gi|355703292|gb|EHH29783.1| hypothetical protein EGK_10292, partial [Macaca mulatta]
Length = 227
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 7/91 (7%)
Query: 3 VGTDNSLGDRL---LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD 59
+D GD L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D
Sbjct: 17 AASDAEPGDEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD 76
Query: 60 LKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C ID+ HRNQC+ CRL KCF M K+
Sbjct: 77 ----CQIDQHHRNQCQYCRLKKCFRVGMRKE 103
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 54 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CMIDKRQRNRCQYC 109
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 110 RYQKCLAMGMKRE 122
>gi|315360631|ref|NP_001186756.1| RAR-related orphan receptor gamma 1 [Oncorhynchus mykiss]
gi|313760284|emb|CAT65098.1| RAR-related orphan receptor gamma 1 protein [Oncorhynchus mykiss]
Length = 469
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N +Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|449269569|gb|EMC80331.1| Nuclear receptor ROR-beta, partial [Columba livia]
Length = 461
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 10 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 65
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 66 HCRLQKCLALGMSRDAVK 83
>gi|33943630|gb|AAQ55494.1| NHR-41A [Caenorhabditis elegans]
Length = 583
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD++SG+HYG SC+GC GFFKRSI + Y C++Q D CP+ K HRN+C+ C
Sbjct: 152 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGYVCRSQKD----CPVTKFHRNRCQYC 207
Query: 78 RLNKCFMSAMNKDDFK 93
RL KC M + +
Sbjct: 208 RLRKCLSMGMRSESVQ 223
>gi|71995343|ref|NP_500073.2| Protein NHR-41 [Caenorhabditis elegans]
gi|373253901|emb|CCD63480.1| Protein NHR-41 [Caenorhabditis elegans]
Length = 657
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD++SG+HYG SC+GC GFFKRSI + Y C++Q D CP+ K HRN+C+ C
Sbjct: 194 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGYVCRSQKD----CPVTKFHRNRCQYC 249
Query: 78 RLNKCFMSAMNKDDFK 93
RL KC M + +
Sbjct: 250 RLRKCLSMGMRSESVQ 265
>gi|57015416|sp|Q9N4B8.4|NHR41_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-41
Length = 615
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD++SG+HYG SC+GC GFFKRSI + Y C++Q D CP+ K HRN+C+ C
Sbjct: 152 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKRIGYVCRSQKD----CPVTKFHRNRCQYC 207
Query: 78 RLNKCFMSAMNKDDFK 93
RL KC M + +
Sbjct: 208 RLRKCLSMGMRSESVQ 223
>gi|344271210|ref|XP_003407434.1| PREDICTED: nuclear receptor ROR-beta, partial [Loxodonta
africana]
Length = 458
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 7 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 62
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 63 HCRLQKCLALGMSRDAVK 80
>gi|76364250|gb|ABA41639.1| COUP transcription factor-like protein [Strongylocentrotus
purpuratus]
Length = 336
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VC D+SSGKHYG ++C+GC FFKRS+ RN Y+C+A + CPID+ HRNQC+
Sbjct: 2 IECVVCHDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRN----CPIDQHHRNQCQ 57
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 58 YCRLKKCLKMGMRRE 72
>gi|148613151|gb|ABQ96200.1| UNC-55a isoform [Caenorhabditis briggsae]
Length = 362
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD+SSGKHYG +SC+GC FFKRSI R+ YTC+A + C ID HRNQC+ C
Sbjct: 11 CVVCGDKSSGKHYGQFSCEGCKSFFKRSIRRSLSYTCRATKN----CAIDVQHRNQCQYC 66
Query: 78 RLNKCFMSAMNKD 90
RL KC M K+
Sbjct: 67 RLTKCIRMGMRKE 79
>gi|74147214|dbj|BAE27509.1| unnamed protein product [Mus musculus]
Length = 590
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 95 NKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKD----CVINKHH 149
Query: 71 RNQCRACRLNKCFMSAMNKDDFK 93
RN+C+ CRL +C M +D +
Sbjct: 150 RNRCQYCRLQRCIAFGMKQDSVQ 172
>gi|148613153|gb|ABQ96201.1| UNC-55b isoform [Caenorhabditis briggsae]
Length = 349
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD+SSGKHYG +SC+GC FFKRSI R+ YTC+A + C ID HRNQC+ C
Sbjct: 11 CVVCGDKSSGKHYGQFSCEGCKSFFKRSIRRSLSYTCRATKN----CAIDVQHRNQCQYC 66
Query: 78 RLNKCFMSAMNKD 90
RL KC M K+
Sbjct: 67 RLTKCIRMGMRKE 79
>gi|71681086|gb|AAH99776.1| Rxrb protein, partial [Rattus norvegicus]
Length = 485
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ Y+C+ D C +DK RN+C+ C
Sbjct: 157 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKD----CTVDKRQRNRCQYC 212
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 213 RYQKCLATGMKRE 225
>gi|133777005|gb|AAH03757.2| Rora protein [Mus musculus]
Length = 460
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLAVGMSRDAVK 81
>gi|405965497|gb|EKC30866.1| Retinoic acid receptor beta [Crassostrea gigas]
Length = 501
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 4/74 (5%)
Query: 17 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 76
PC VC D+SSG HYG+ SC+GC GFF+RS+ +N YTC + CPI+K RN+C+
Sbjct: 111 PCVVCSDKSSGYHYGVSSCEGCKGFFRRSVQKNMQYTCHKDKN----CPINKVTRNRCQY 166
Query: 77 CRLNKCFMSAMNKD 90
CRL KC+ + M+K+
Sbjct: 167 CRLQKCYATGMSKE 180
>gi|291397992|ref|XP_002715400.1| PREDICTED: RAR-related orphan receptor C [Oryctolagus cuniculus]
Length = 502
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS + Y+C Q + CPID+T RN+C+
Sbjct: 17 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQCHVAYSCTRQQN----CPIDRTSRNRCQ 72
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 73 HCRLQKCLALGMSRDAVK 90
>gi|332843955|ref|XP_001173382.2| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Pan troglodytes]
Length = 460
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLAVGMSRDAVK 81
>gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xenopus (Silurana) tropicalis]
gi|89268107|emb|CAJ83850.1| Retinoic acid receptor RXR-beta (Retinoid X receptor beta) [Xenopus
(Silurana) tropicalis]
Length = 449
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ YTC+ D C +DK RN+C+ C
Sbjct: 128 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKD----CIVDKRQRNRCQYC 183
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 184 RYQKCLATGMKRE 196
>gi|19743901|ref|NP_599022.1| nuclear receptor ROR-alpha isoform b [Homo sapiens]
gi|548814|sp|P35398.1|RORA_HUMAN RecName: Full=Nuclear receptor ROR-alpha; AltName: Full=Nuclear
receptor RZR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group F member 1; AltName:
Full=Retinoid-related orphan receptor-alpha
gi|451566|gb|AAA62659.1| RORalpha2 [Homo sapiens]
gi|119598002|gb|EAW77596.1| RAR-related orphan receptor A, isoform CRA_d [Homo sapiens]
Length = 556
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 104 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 159
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 160 HCRLQKCLAVGMSRDAVK 177
>gi|397515462|ref|XP_003827970.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Pan paniscus]
Length = 524
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 72 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 127
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 128 HCRLQKCLAVGMSRDAVK 145
>gi|354478543|ref|XP_003501474.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Cricetulus griseus]
gi|344252291|gb|EGW08395.1| Nuclear receptor subfamily 2 group C member 1 [Cricetulus griseus]
Length = 590
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 95 NKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKD----CIINKHH 149
Query: 71 RNQCRACRLNKCFMSAMNKDDFK 93
RN+C+ CRL +C M +D +
Sbjct: 150 RNRCQYCRLQRCIAFGMKQDSVQ 172
>gi|119597999|gb|EAW77593.1| RAR-related orphan receptor A, isoform CRA_a [Homo sapiens]
Length = 467
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 15 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 70
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 71 HCRLQKCLAVGMSRDAVK 88
>gi|1619314|emb|CAA69930.1| nuclear orphan receptor ROR-alpha 4 [Mus musculus]
Length = 459
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLAVGMSRDAVK 81
>gi|7305439|ref|NP_038674.1| nuclear receptor ROR-alpha [Mus musculus]
gi|1710637|sp|P51448.1|RORA_MOUSE RecName: Full=Nuclear receptor ROR-alpha; AltName: Full=Nuclear
receptor RZR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group F member 1; AltName:
Full=Retinoid-related orphan receptor-alpha
gi|1289326|gb|AAC52513.1| ROR-alpha 1 [Mus musculus]
gi|148694214|gb|EDL26161.1| RAR-related orphan receptor alpha [Mus musculus]
Length = 523
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 71 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 126
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 127 HCRLQKCLAVGMSRDAVK 144
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGDR+SGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 192 CAVCGDRASGKHYGVYSCEGCEGFFKRTVRKDLSYTCRDSKD----CVIDKRQRNRCQYC 247
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 248 RYQKCLAMGMKRE 260
>gi|358251516|gb|AEU04707.1| retinoid X receptor alpha [Lateolabrax japonicus]
Length = 440
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 136 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKD----CVIDKRQRNRCQYC 191
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 192 RYQKCLAMGMKRE 204
>gi|124013557|gb|ABM88028.1| RORC [Macaca nemestrina]
Length = 442
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 6 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 61
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 62 HCRLQKCLALGMSRDAVK 79
>gi|171846245|ref|NP_035759.3| nuclear receptor subfamily 2 group C member 1 [Mus musculus]
gi|341942228|sp|Q505F1.3|NR2C1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2; Short=mTR2
gi|63101502|gb|AAH94580.1| Nr2c1 protein [Mus musculus]
gi|74143559|dbj|BAE28842.1| unnamed protein product [Mus musculus]
gi|111598870|gb|AAH90662.1| Nr2c1 protein [Mus musculus]
Length = 590
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 95 NKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKD----CVINKHH 149
Query: 71 RNQCRACRLNKCFMSAMNKDDFK 93
RN+C+ CRL +C M +D +
Sbjct: 150 RNRCQYCRLQRCIAFGMKQDSVQ 172
>gi|349096|gb|AAA42095.1| transcription factor, partial [Rattus norvegicus]
Length = 483
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 32 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 87
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 88 HCRLQKCLALGMSRDAVK 105
>gi|431898686|gb|ELK07066.1| Nuclear receptor ROR-beta, partial [Pteropus alecto]
Length = 460
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 9 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 64
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 65 HCRLQKCLALGMSRDAVK 82
>gi|68132034|gb|AAY85283.1| RORgamma-B [Danio rerio]
Length = 480
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N +Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M++D
Sbjct: 64 HCRLQKCLALGMSRD 78
>gi|13489062|ref|NP_035436.1| retinoic acid receptor RXR-beta isoform 2 [Mus musculus]
gi|1350912|sp|P28704.2|RXRB_MOUSE RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=MHC
class I regulatory element-binding protein H-2RIIBP;
AltName: Full=Nuclear receptor subfamily 2 group B
member 2; AltName: Full=Retinoid X receptor beta
gi|987669|dbj|BAA04858.1| RXR-beta1 isoform [Mus musculus]
gi|3811388|gb|AAC69904.1| RXRbeta [Mus musculus]
gi|29437348|gb|AAH49773.1| Retinoid X receptor beta [Mus musculus]
gi|148678301|gb|EDL10248.1| retinoid X receptor beta, isoform CRA_c [Mus musculus]
Length = 520
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ Y+C+ D C +DK RN+C+ C
Sbjct: 192 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKD----CTVDKRQRNRCQYC 247
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 248 RYQKCLATGMKRE 260
>gi|197941310|gb|ACH78359.1| retinoid X receptor beta, partial [Sebastiscus marmoratus]
Length = 450
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C +DK RN+C+ C
Sbjct: 127 CSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLVDKRQRNRCQYC 182
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 183 RYQKCLAMGMKRE 195
>gi|90025357|gb|ABD85142.1| SXR-like nuclear receptor [Lymantria dispar]
Length = 424
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
LL C +CGDR++GKHYG SCDGC FF+RS+ +N YTC+ +C +DK RN
Sbjct: 18 LLSQHCAICGDRATGKHYGASSCDGCKDFFRRSVRKNHQYTCR----FSRNCVVDKDKRN 73
Query: 73 QCRACRLNKCFMSAMNKD 90
QCR CRL KCF + M K+
Sbjct: 74 QCRYCRLRKCFKAGMKKE 91
>gi|118344170|ref|NP_001071910.1| nuclear receptor [Ciona intestinalis]
gi|92081500|dbj|BAE93297.1| nuclear receptor [Ciona intestinalis]
Length = 692
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGDR+SG+HYG SC+GC GFFKRS+ + YTC+ D C ++KTHRN+C+ C
Sbjct: 206 CVVCGDRASGRHYGAKSCEGCKGFFKRSVRKKLTYTCRGSRD----CSVNKTHRNRCQYC 261
Query: 78 RLNKCFMSAMNKDDFK 93
R KC + M D +
Sbjct: 262 RFQKCVLMGMKSDSVQ 277
>gi|340719405|ref|XP_003398144.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 283
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ CKVCGDRS GKHYG+Y CDGCS FFKRS+ R ++TC A G C +DK RN C
Sbjct: 9 VACKVCGDRSYGKHYGVYCCDGCSCFFKRSVRRGALFTCIAG---TGACFVDKARRNWCP 65
Query: 76 ACRLNKCFMSAMN 88
CRLNKCF MN
Sbjct: 66 YCRLNKCFTVGMN 78
>gi|1890579|emb|CAA72244.1| orphan receptor [Mus musculus]
Length = 590
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 95 NKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKD----CVINKHH 149
Query: 71 RNQCRACRLNKCFMSAMNKDDFK 93
RN+C+ CRL +C M +D +
Sbjct: 150 RNRCQYCRLQRCIAFGMKQDSVQ 172
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 38 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 93
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 94 RYQKCLAMGMKRE 106
>gi|395746804|ref|XP_002825560.2| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Pongo abelii]
Length = 524
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 72 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 127
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 128 HCRLQKCLAVGMSRDAVK 145
>gi|351698410|gb|EHB01329.1| Nuclear receptor ROR-alpha [Heterocephalus glaber]
Length = 571
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 120 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 175
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 176 HCRLQKCLAVGMSRDAVK 193
>gi|301616152|ref|XP_002937524.1| PREDICTED: nuclear receptor ROR-alpha-like [Xenopus (Silurana)
tropicalis]
Length = 464
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 71
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 72 HCRLQKCLAVGMSRDAVK 89
>gi|16905398|gb|AAL31315.1|L26957_1 orphan receptor [Mus musculus]
gi|1049076|gb|AAC29502.1| TR2 [Mus musculus]
Length = 590
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
+++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D C I+K H
Sbjct: 95 NKVFDL-CVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKD----CVINKHH 149
Query: 71 RNQCRACRLNKCFMSAMNKDDFK 93
RN+C+ CRL +C M +D +
Sbjct: 150 RNRCQYCRLQRCIAFGMKQDSVQ 172
>gi|402874470|ref|XP_003901060.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Papio anubis]
Length = 524
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 72 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKN----CLIDRTSRNRCQ 127
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 128 HCRLQKCLAVGMSRDAVK 145
>gi|380023918|ref|XP_003695756.1| PREDICTED: transcription factor HNF-4 homolog [Apis florea]
Length = 449
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ + YTC+ +C IDK RNQCR C
Sbjct: 35 CAICGDRATGKHYGAASCDGCKGFFRRSVRKKHEYTCR----FSRNCIIDKDKRNQCRYC 90
Query: 78 RLNKCFMSAM 87
RL KCF + M
Sbjct: 91 RLRKCFKAGM 100
>gi|1619294|emb|CAA69929.1| nuclear orphan receptor ROR-beta [Homo sapiens]
Length = 459
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|327315356|ref|NP_001192143.1| retinoic acid receptor RXR-beta isoform 1 [Mus musculus]
gi|74198206|dbj|BAE35275.1| unnamed protein product [Mus musculus]
Length = 524
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ Y+C+ D C +DK RN+C+ C
Sbjct: 192 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKD----CTVDKRQRNRCQYC 247
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 248 RYQKCLATGMKRE 260
>gi|224088946|ref|XP_002190992.1| PREDICTED: nuclear receptor ROR-beta [Taeniopygia guttata]
Length = 458
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|77404367|ref|NP_996731.2| retinoic acid receptor RXR-beta [Rattus norvegicus]
gi|149043372|gb|EDL96823.1| rCG60716 [Rattus norvegicus]
Length = 518
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ Y+C+ D C +DK RN+C+ C
Sbjct: 190 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKD----CTVDKRQRNRCQYC 245
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 246 RYQKCLATGMKRE 258
>gi|45384158|ref|NP_990424.1| nuclear receptor ROR-beta [Gallus gallus]
gi|1619285|emb|CAA69928.1| nuclear orphan receptor ROR-beta [Gallus gallus]
Length = 459
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|166092128|gb|ABY82108.1| RAR-related orphan receptor C isoform a (predicted) [Callithrix
jacchus]
Length = 491
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+ RN+C+
Sbjct: 5 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRASRNRCQ 60
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 61 HCRLQKCLALGMSRDAVK 78
>gi|432861682|ref|XP_004069686.1| PREDICTED: nuclear receptor ROR-alpha-like [Oryzias latipes]
Length = 519
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 67 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN----CLIDRTSRNRCQ 122
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 123 HCRLQKCLAVGMSRDAVK 140
>gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogaster]
gi|220947910|gb|ACL86498.1| svp-PC [synthetic construct]
gi|220957212|gb|ACL91149.1| svp-PC [synthetic construct]
Length = 543
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C V GD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 193 DSKQNIECVVYGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 248
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 249 RNQCQYCRLKKCLKMGMRRE 268
>gi|387184|gb|AAA37772.1| MHC class I regulatory element binding protein (H-2RIIBP), partial
[Mus musculus]
Length = 446
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ Y+C+ D C +DK RN+C+ C
Sbjct: 118 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKD----CTVDKRQRNRCQYC 173
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 174 RYQKCLATGMKRE 186
>gi|73972484|ref|XP_538856.2| PREDICTED: retinoid X receptor, beta isoform 1 [Canis lupus
familiaris]
Length = 532
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ Y+C+ D C +DK RN+C+ C
Sbjct: 204 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKD----CTVDKRQRNRCQYC 259
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 260 RYQKCLATGMKRE 272
>gi|62900941|sp|Q5TJF7.1|RXRB_CANFA RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|55956944|emb|CAI11431.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 533
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ Y+C+ D C +DK RN+C+ C
Sbjct: 205 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKD----CTVDKRQRNRCQYC 260
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 261 RYQKCLATGMKRE 273
>gi|301621480|ref|XP_002940077.1| PREDICTED: nuclear receptor ROR-beta-like [Xenopus (Silurana)
tropicalis]
Length = 458
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|291383385|ref|XP_002708255.1| PREDICTED: RAR-related orphan receptor B [Oryctolagus cuniculus]
Length = 459
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|281344010|gb|EFB19594.1| hypothetical protein PANDA_014042 [Ailuropoda melanoleuca]
Length = 459
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|118344438|ref|NP_001072044.1| nuclear receptor [Ciona intestinalis]
gi|70571388|dbj|BAE06736.1| nuclear receptor [Ciona intestinalis]
Length = 692
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGDR+SG+HYG SC+GC GFFKRS+ + YTC+ D C ++KTHRN+C+ C
Sbjct: 206 CVVCGDRASGRHYGAKSCEGCKGFFKRSVRKKLTYTCRGSRD----CSVNKTHRNRCQYC 261
Query: 78 RLNKCFMSAMNKDDFK 93
R KC + M D +
Sbjct: 262 RFQKCVLMGMKSDSVQ 277
>gi|410908014|ref|XP_003967486.1| PREDICTED: nuclear receptor ROR-alpha-like [Takifugu rubripes]
Length = 519
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 67 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN----CLIDRTSRNRCQ 122
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 123 HCRLQKCLAVGMSRDAVK 140
>gi|395819239|ref|XP_003783005.1| PREDICTED: nuclear receptor ROR-beta [Otolemur garnettii]
Length = 459
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 8 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 63
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 64 HCRLQKCLALGMSRDAVK 81
>gi|334333054|ref|XP_001372755.2| PREDICTED: nuclear receptor ROR-beta [Monodelphis domestica]
Length = 505
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T+RN+C+
Sbjct: 74 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRN----CLIDRTNRNRCQ 129
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 130 HCRLQKCLALGMSRDAVK 147
>gi|164414403|ref|NP_001103637.1| nuclear receptor ROR-alpha [Danio rerio]
gi|156720176|dbj|BAF76726.1| retinoid-related orphan receptor alpha 2 [Danio rerio]
Length = 468
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 16 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN----CLIDRTSRNRCQ 71
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 72 HCRLQKCLAVGMSRDAVK 89
>gi|348505860|ref|XP_003440478.1| PREDICTED: nuclear receptor ROR-alpha-like [Oreochromis niloticus]
Length = 519
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + C ID+T RN+C+
Sbjct: 67 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKN----CLIDRTSRNRCQ 122
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 123 HCRLQKCLAVGMSRDAVK 140
>gi|311115255|gb|ADP69098.1| BCL6 corepressor/retinoic acid receptor alpha fusion protein [Homo
sapiens]
Length = 1931
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 52/77 (67%), Gaps = 4/77 (5%)
Query: 17 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 76
PC VC D+SSG HYG+ +C+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 1556 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKN----CIINKVTRNRCQY 1611
Query: 77 CRLNKCFMSAMNKDDFK 93
CRL KCF M+K+ +
Sbjct: 1612 CRLQKCFEVGMSKESVR 1628
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.140 0.474
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,499,901,444
Number of Sequences: 23463169
Number of extensions: 53215920
Number of successful extensions: 128651
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7358
Number of HSP's successfully gapped in prelim test: 390
Number of HSP's that attempted gapping in prelim test: 113834
Number of HSP's gapped (non-prelim): 8020
length of query: 93
length of database: 8,064,228,071
effective HSP length: 63
effective length of query: 30
effective length of database: 6,586,048,424
effective search space: 197581452720
effective search space used: 197581452720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)