BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6599
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9YGL3|NR2E1_ORYLA Nuclear receptor subfamily 2 group E member 1 OS=Oryzias latipes
GN=nr2e1 PE=2 SV=1
Length = 396
Score = 143 bits (360), Expect = 4e-34, Method: Composition-based stats.
Identities = 61/84 (72%), Positives = 68/84 (80%), Gaps = 2/84 (2%)
Query: 7 NSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPI 66
N R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR+Y CK+ +G CP+
Sbjct: 16 NVKSSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRIYLCKSGS--QGGCPV 73
Query: 67 DKTHRNQCRACRLNKCFMSAMNKD 90
DKTHRNQCRACRL KC MNKD
Sbjct: 74 DKTHRNQCRACRLKKCLEVNMNKD 97
>sp|Q9Y466|NR2E1_HUMAN Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 142 bits (358), Expect = 6e-34, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>sp|Q91379|NR2E1_CHICK Nuclear receptor subfamily 2 group E member 1 OS=Gallus gallus
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 142 bits (358), Expect = 6e-34, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>sp|Q64104|NR2E1_MOUSE Nuclear receptor subfamily 2 group E member 1 OS=Mus musculus
GN=Nr2e1 PE=1 SV=1
Length = 385
Score = 142 bits (357), Expect = 7e-34, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>sp|P70052|NR2E1_XENLA Nuclear receptor subfamily 2 group E member 1 OS=Xenopus laevis
GN=nr2e1 PE=2 SV=1
Length = 386
Score = 140 bits (353), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/79 (75%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Query: 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
R+LDIPCKVCGDRSSGKHYG+Y+CDGCSGFFKRSI RNR Y CK+ +G CP+DKTHR
Sbjct: 10 RILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRSYVCKSGN--QGGCPVDKTHR 67
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 68 NQCRACRLKKCLEVNMNKD 86
>sp|O16845|TLL_DROVI Protein tailless OS=Drosophila virilis GN=tll PE=3 SV=1
Length = 450
Score = 130 bits (326), Expect = 3e-30, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>sp|P18102|TLL_DROME Protein tailless OS=Drosophila melanogaster GN=tll PE=2 SV=1
Length = 452
Score = 130 bits (326), Expect = 3e-30, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%), Gaps = 2/78 (2%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
L +PCKVC D SSGKHYGIY+CDGC+GFFKRSI R+R Y CK+Q +G C +DKTHRN
Sbjct: 29 LYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQK--QGLCVVDKTHRN 86
Query: 73 QCRACRLNKCFMSAMNKD 90
QCRACRL KCF MNKD
Sbjct: 87 QCRACRLRKCFEVGMNKD 104
>sp|Q9XVV3|NHR67_CAEEL Nuclear hormone receptor family member nhr-67 OS=Caenorhabditis
elegans GN=nhr-67 PE=1 SV=1
Length = 416
Score = 122 bits (306), Expect = 6e-28, Method: Composition-based stats.
Identities = 53/79 (67%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGD-LKGHCPIDKTHR 71
LLD+ C+VC D SSGKHY I+SCDGC+GFFKRSI R+R Y CK +G +G C +DKTHR
Sbjct: 16 LLDVDCRVCEDHSSGKHYSIFSCDGCAGFFKRSIRRHRQYVCKNKGSPSEGQCKVDKTHR 75
Query: 72 NQCRACRLNKCFMSAMNKD 90
NQCRACRL KC MNKD
Sbjct: 76 NQCRACRLRKCLEIGMNKD 94
>sp|Q9TTF0|NR2E3_BOVIN Photoreceptor-specific nuclear receptor OS=Bos taurus GN=NR2E3 PE=1
SV=2
Length = 411
Score = 115 bits (289), Expect = 6e-26, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 37 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 93
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 94 ACRLKKCLQAGMNQD 108
>sp|Q9QXZ7|NR2E3_MOUSE Photoreceptor-specific nuclear receptor OS=Mus musculus GN=Nr2e3
PE=1 SV=1
Length = 395
Score = 115 bits (289), Expect = 6e-26, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 38 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 94
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 95 ACRLKKCLQAGMNQD 109
>sp|Q9Y5X4|NR2E3_HUMAN Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3
PE=1 SV=1
Length = 410
Score = 115 bits (288), Expect = 8e-26, Method: Composition-based stats.
Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C+VCGD SSGKHYGIY+C+GCSGFFKRS+ R +Y C+ G CP+DK HRNQC+
Sbjct: 45 LQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA---GMCPVDKAHRNQCQ 101
Query: 76 ACRLNKCFMSAMNKD 90
ACRL KC + MN+D
Sbjct: 102 ACRLKKCLQAGMNQD 116
>sp|Q06726|NR2F5_DANRE Nuclear receptor subfamily 2 group F member 5 OS=Danio rerio
GN=nr2f5 PE=2 SV=1
Length = 403
Score = 108 bits (269), Expect = 1e-23, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G D GD++ ++ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+ D
Sbjct: 40 GNDALSGDKIPNVDCMVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRGNRD---- 95
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 96 CPIDQHHRNQCQYCRLKKCLKVGMRRE 122
>sp|P10588|NR2F6_HUMAN Nuclear receptor subfamily 2 group F member 6 OS=Homo sapiens
GN=NR2F6 PE=1 SV=2
Length = 404
Score = 106 bits (265), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 107
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 108 CQYCRLKKCFRVGMRKE 124
>sp|O09017|NR2F6_RAT Nuclear receptor subfamily 2 group F member 6 OS=Rattus norvegicus
GN=Nr2f6 PE=2 SV=1
Length = 390
Score = 106 bits (265), Expect = 4e-23, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKR+I RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>sp|P43136|NR2F6_MOUSE Nuclear receptor subfamily 2 group F member 6 OS=Mus musculus
GN=Nr2f6 PE=1 SV=2
Length = 390
Score = 106 bits (264), Expect = 4e-23, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 4/77 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
L + C VCGD+SSGKHYG+++C+GC FFKRSI RN YTC++ D C ID+ HRNQ
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD----CQIDQHHRNQ 108
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CRL KCF M K+
Sbjct: 109 CQYCRLKKCFRVGMRKE 125
>sp|P49698|HNF4A_MOUSE Hepatocyte nuclear factor 4-alpha OS=Mus musculus GN=Hnf4a PE=1
SV=2
Length = 474
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>sp|P41235|HNF4A_HUMAN Hepatocyte nuclear factor 4-alpha OS=Homo sapiens GN=HNF4A PE=1
SV=3
Length = 474
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNAPNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>sp|P22449|HNF4A_RAT Hepatocyte nuclear factor 4-alpha OS=Rattus norvegicus GN=Hnf4a
PE=1 SV=3
Length = 474
Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 2 NVGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLK 61
N+ + NSLG L C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+
Sbjct: 47 NLNSSNSLGVSAL---CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCR----FS 99
Query: 62 GHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
C +DK RNQCR CRL KCF + M K+
Sbjct: 100 RQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>sp|Q06725|N2F1A_DANRE Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio
GN=nr2f1a PE=2 SV=1
Length = 411
Score = 103 bits (258), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/87 (52%), Positives = 58/87 (66%), Gaps = 5/87 (5%)
Query: 4 GTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
G+ NS G I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A +
Sbjct: 63 GSQNS-GQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN---- 117
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
CPID+ HRNQC+ CRL KC M ++
Sbjct: 118 CPIDQHHRNQCQYCRLKKCLKVGMRRE 144
>sp|Q90733|COT2_CHICK COUP transcription factor 2 OS=Gallus gallus GN=NR2F2 PE=2 SV=1
Length = 410
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 73 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 128
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 129 YCRLKKCLKVGMRRE 143
>sp|O09018|COT2_RAT COUP transcription factor 2 OS=Rattus norvegicus GN=Nr2f2 PE=1 SV=1
Length = 414
Score = 101 bits (251), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>sp|P43135|COT2_MOUSE COUP transcription factor 2 OS=Mus musculus GN=Nr2f2 PE=1 SV=2
Length = 414
Score = 101 bits (251), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>sp|P24468|COT2_HUMAN COUP transcription factor 2 OS=Homo sapiens GN=NR2F2 PE=1 SV=1
Length = 414
Score = 101 bits (251), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 OS=Bos taurus GN=NR2F2 PE=2 SV=1
Length = 414
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPIDQHHRNQCQ 132
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 133 YCRLKKCLKVGMRRE 147
>sp|Q91766|HNF4A_XENLA Hepatocyte nuclear factor 4-alpha OS=Xenopus laevis GN=hnf4a PE=2
SV=2
Length = 464
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 13/99 (13%)
Query: 1 MNVGTDNSLGDRL---------LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRV 51
+++GTD S D ++ C +CGDR++GKHYG SCDGC GFF+RS+ +N +
Sbjct: 34 LSIGTDTSTSDVTSLSASNSIGINSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHM 93
Query: 52 YTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90
Y+C+ C +DK RNQCR CRL KCF + M K+
Sbjct: 94 YSCR----FSRQCVVDKDKRNQCRYCRLKKCFRAGMKKE 128
>sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 OS=Bos taurus GN=NR2F1 PE=2 SV=1
Length = 424
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 85 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 140
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 141 YCRLKKCLKVGMRRE 155
>sp|P10589|COT1_HUMAN COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1
Length = 423
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 84 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 139
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 140 YCRLKKCLKVGMRRE 154
>sp|Q60632|COT1_MOUSE COUP transcription factor 1 OS=Mus musculus GN=Nr2f1 PE=2 SV=2
Length = 422
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC+
Sbjct: 83 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQCQ 138
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 139 YCRLKKCLKVGMRRE 153
>sp|P16376|7UP2_DROME Steroid receptor seven-up, isoform A OS=Drosophila melanogaster
GN=svp PE=2 SV=3
Length = 746
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 193 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 248
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 249 RNQCQYCRLKKCLKMGMRRE 268
>sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus norvegicus GN=Rxrg PE=2
SV=1
Length = 463
Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>sp|Q6PH18|N2F1B_DANRE Nuclear receptor subfamily 2 group F member 1-B OS=Danio rerio
GN=nr2f1b PE=2 SV=1
Length = 389
Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
+ C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CP+D+ HRNQC+
Sbjct: 52 VECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN----CPVDQHHRNQCQ 107
Query: 76 ACRLNKCFMSAMNKD 90
CRL KC M ++
Sbjct: 108 YCRLKKCLKVGMRRE 122
>sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gamma OS=Mus musculus GN=Rxrg PE=2 SV=2
Length = 463
Score = 100 bits (248), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>sp|Q0GFF6|RXRG_PIG Retinoic acid receptor RXR-gamma OS=Sus scrofa GN=RXRG PE=2 SV=2
Length = 463
Score = 99.8 bits (247), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>sp|P48443|RXRG_HUMAN Retinoic acid receptor RXR-gamma OS=Homo sapiens GN=RXRG PE=1 SV=1
Length = 463
Score = 99.8 bits (247), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>sp|Q5REL6|RXRG_PONAB Retinoic acid receptor RXR-gamma OS=Pongo abelii GN=RXRG PE=2 SV=1
Length = 463
Score = 99.8 bits (247), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos taurus GN=RXRG PE=2 SV=1
Length = 463
Score = 99.8 bits (247), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 194
Query: 78 RLNKCFMSAMNKD 90
R KC + M ++
Sbjct: 195 RYQKCLVMGMKRE 207
>sp|P16375|7UP1_DROME Steroid receptor seven-up, isoforms B/C OS=Drosophila melanogaster
GN=svp PE=2 SV=1
Length = 543
Score = 99.4 bits (246), Expect = 5e-21, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
D +I C VCGD+SSGKHYG ++C+GC FFKRS+ RN Y+C+ + CPID+ H
Sbjct: 193 DSKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRN----CPIDQHH 248
Query: 71 RNQCRACRLNKCFMSAMNKD 90
RNQC+ CRL KC M ++
Sbjct: 249 RNQCQYCRLKKCLKMGMRRE 268
>sp|P28701|RXRG_CHICK Retinoic acid receptor RXR-gamma OS=Gallus gallus GN=RXRG PE=2 SV=1
Length = 467
Score = 99.4 bits (246), Expect = 7e-21, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR+I ++ +YTC+ D C IDK RN+C+ C
Sbjct: 143 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD----CLIDKRQRNRCQYC 198
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 199 RYQKCLAMGMKRE 211
>sp|P49866|HNF4_DROME Transcription factor HNF-4 homolog OS=Drosophila melanogaster
GN=Hnf4 PE=2 SV=2
Length = 666
Score = 99.0 bits (245), Expect = 8e-21, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N YTC+ +C +DK RNQCR C
Sbjct: 104 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCR----FARNCVVDKDKRNQCRYC 159
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 160 RLRKCFKAGMKKE 172
>sp|O02279|NHR62_CAEEL Nuclear hormone receptor family member nhr-62 OS=Caenorhabditis
elegans GN=nhr-62 PE=2 SV=3
Length = 515
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+++ C VCGD++ GKHYG+ +C+GC GFF+RS+ NR Y C+ +G C I K HRN
Sbjct: 94 INLVCVVCGDQAFGKHYGVNACNGCKGFFRRSVWHNRQYLCR----FEGRCAIAKEHRNV 149
Query: 74 CRACRLNKCFMSAMN 88
CRACRL +CF++ MN
Sbjct: 150 CRACRLKQCFVAGMN 164
>sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus norvegicus GN=Rxra PE=2
SV=1
Length = 467
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus musculus GN=Rxra PE=1 SV=1
Length = 467
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 140 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 195
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 196 RYQKCLAMGMKRE 208
>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1
Length = 462
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 135 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 190
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 191 RYQKCLAMGMKRE 203
>sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Danio rerio GN=rxraa PE=2
SV=2
Length = 430
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 103 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CVIDKRQRNRCQYC 158
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 159 RYQKCLAMGMKRE 171
>sp|Q5RAP4|RORG_PONAB Nuclear receptor ROR-gamma OS=Pongo abelii GN=RORC PE=2 SV=1
Length = 518
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
>sp|Q6GN21|N2C1A_XENLA Nuclear receptor subfamily 2 group C member 1-A OS=Xenopus laevis
GN=nr2c1-a PE=2 SV=1
Length = 637
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 5/88 (5%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
D +L +L+++ C VCGD++SG+HYG +C+GC GFFKRSI +N VYTC+ D C
Sbjct: 141 DQNLNKQLVEL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKD----CV 195
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKDDFK 93
I+K +RN+C+ CRL +C M +D +
Sbjct: 196 INKHYRNRCQYCRLQRCMSLGMKQDSVQ 223
>sp|Q95K90|NR2C1_MACFA Nuclear receptor subfamily 2 group C member 1 OS=Macaca
fascicularis GN=NR2C1 PE=2 SV=1
Length = 603
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 97 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 154
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 155 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 184
>sp|Q28CK1|NR2C1_XENTR Nuclear receptor subfamily 2 group C member 1 OS=Xenopus tropicalis
GN=nr2c1 PE=2 SV=1
Length = 636
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 5/88 (5%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
D +L +L+++ C VCGD++SG+HYG +C+GC GFFKRSI +N VYTC+ D C
Sbjct: 141 DQNLNKQLVEL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKD----CV 195
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKDDFK 93
I+K +RN+C+ CRL +C M +D +
Sbjct: 196 INKHYRNRCQYCRLQRCIALGMKQDSVQ 223
>sp|Q5RCZ5|NR2C1_PONAB Nuclear receptor subfamily 2 group C member 1 OS=Pongo abelii
GN=NR2C1 PE=2 SV=1
Length = 601
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 5 TDNSLGD----RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDL 60
TDNS D ++ D+ C VCGD++SG+HYG +C+GC GFFKRSI +N VY+C+ D
Sbjct: 98 TDNSSPDQGPNKVFDL-CVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKD- 155
Query: 61 KGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93
C I+K HRN+C+ CRL +C M +D +
Sbjct: 156 ---CIINKHHRNRCQYCRLQRCIAFGMKQDSVQ 185
>sp|P51449|RORG_HUMAN Nuclear receptor ROR-gamma OS=Homo sapiens GN=RORC PE=1 SV=2
Length = 518
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 4/78 (5%)
Query: 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCR 75
IPCK+CGD+SSG HYG+ +C+GC GFF+RS N Y+C Q + CPID+T RN+C+
Sbjct: 29 IPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQN----CPIDRTSRNRCQ 84
Query: 76 ACRLNKCFMSAMNKDDFK 93
CRL KC M++D K
Sbjct: 85 HCRLQKCLALGMSRDAVK 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.474
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,654,495
Number of Sequences: 539616
Number of extensions: 1333612
Number of successful extensions: 3821
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2878
Number of HSP's gapped (non-prelim): 487
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)