Query psy6599
Match_columns 93
No_of_seqs 156 out of 1060
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 22:12:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cbb_A HNF-4-alpha, hepatocyte 100.0 1.4E-34 4.8E-39 171.3 4.6 73 17-93 2-74 (78)
2 2ebl_A COUP transcription fact 100.0 9.5E-35 3.2E-39 175.8 4.0 77 13-93 5-81 (89)
3 1dsz_B RXR-alpha, retinoic aci 100.0 1E-34 3.5E-39 174.3 3.6 77 13-93 3-79 (85)
4 2han_A Protein ultraspiracle; 100.0 1.7E-34 5.8E-39 175.9 4.1 78 12-93 7-84 (93)
5 1hcq_A Protein (estrogen recep 100.0 3.4E-34 1.2E-38 171.7 5.1 76 14-93 3-78 (84)
6 1ynw_B Retinoic acid receptor 100.0 6.5E-34 2.2E-38 175.0 5.4 76 14-93 2-77 (99)
7 1dsz_A RAR-alpha, retinoic aci 100.0 6E-34 2E-38 171.4 4.3 75 15-93 4-78 (86)
8 1cit_A NGFI-B, protein (orphan 100.0 8.7E-34 3E-38 171.6 4.8 74 16-93 1-74 (89)
9 4hn5_A Glucocorticoid receptor 100.0 1.1E-33 3.9E-38 178.3 5.2 81 9-93 23-103 (117)
10 1a6y_A Orphan nuclear receptor 100.0 2.9E-33 9.9E-38 170.8 4.6 75 15-93 7-82 (94)
11 2a66_A Orphan nuclear receptor 100.0 2.2E-33 7.6E-38 176.1 3.8 79 11-93 5-83 (113)
12 2han_B Ecdysone receptor; tran 100.0 3.9E-33 1.3E-37 176.5 4.6 79 11-93 4-82 (119)
13 1lo1_A Steroid hormone recepto 100.0 8.2E-34 2.8E-38 174.3 0.9 77 13-93 2-78 (98)
14 2nll_B Protein (thyroid hormon 100.0 6.5E-33 2.2E-37 171.7 4.8 75 15-93 1-77 (103)
15 1kb2_A Vitamin D3 receptor; VD 100.0 6E-33 2.1E-37 173.6 4.6 77 13-93 4-80 (110)
16 3g9m_A Glucocorticoid receptor 100.0 2.7E-33 9.4E-38 169.8 2.9 75 15-93 2-76 (90)
17 1r4i_A Androgen receptor; AR, 100.0 1.9E-32 6.4E-37 170.0 5.0 76 14-93 6-81 (105)
18 3dzy_A Retinoic acid receptor 99.9 6.2E-29 2.1E-33 186.1 3.7 76 14-93 136-211 (467)
19 3dzy_D Peroxisome proliferator 99.9 5.7E-28 1.9E-32 178.7 4.9 76 12-93 47-123 (419)
20 2lze_A A primordial catalytic 99.8 2.4E-21 8.4E-26 116.3 3.0 64 23-92 12-75 (87)
21 3dfx_A Trans-acting T-cell-spe 75.1 1.8 6.3E-05 23.7 2.0 34 12-45 4-41 (63)
22 2vut_I AREA, nitrogen regulato 74.5 1.1 3.9E-05 22.6 1.0 30 16-45 2-35 (43)
23 1gnf_A Transcription factor GA 63.8 3.6 0.00012 21.0 1.5 30 15-44 4-37 (46)
24 4gat_A Nitrogen regulatory pro 59.5 5.2 0.00018 22.0 1.8 32 13-44 7-42 (66)
25 2l43_A N-teminal domain from h 58.1 5.4 0.00018 22.9 1.8 31 14-44 24-54 (88)
26 2yqq_A Zinc finger HIT domain- 54.5 8.4 0.00029 20.5 2.1 19 5-23 2-20 (56)
27 2kae_A GATA-type transcription 53.5 7.6 0.00026 21.7 1.8 31 14-45 7-43 (71)
28 2e6r_A Jumonji/ARID domain-con 52.1 13 0.00044 21.4 2.8 64 5-83 6-69 (92)
29 2lri_C Autoimmune regulator; Z 50.1 6.1 0.00021 21.5 1.1 27 14-45 11-37 (66)
30 1dl6_A Transcription factor II 44.4 17 0.00059 19.1 2.3 33 8-40 4-38 (58)
31 2lbm_A Transcriptional regulat 43.7 13 0.00044 23.4 2.0 32 14-45 13-53 (142)
32 2crr_A Stromal membrane-associ 43.2 8.3 0.00028 24.2 1.0 29 16-44 30-61 (141)
33 2crw_A ARF GAP 3, ADP-ribosyla 42.3 9 0.00031 24.4 1.1 31 14-44 28-61 (149)
34 2yql_A PHD finger protein 21A; 41.9 9.6 0.00033 19.7 1.0 28 11-43 5-32 (56)
35 2ku3_A Bromodomain-containing 41.2 6.7 0.00023 21.6 0.3 32 12-43 13-44 (71)
36 2iqj_A Stromal membrane-associ 40.7 7.2 0.00025 24.3 0.4 31 14-44 26-59 (134)
37 4hc9_A Trans-acting T-cell-spe 40.3 23 0.00079 21.3 2.7 33 13-45 57-93 (115)
38 2olm_A Nucleoporin-like protei 38.8 8.3 0.00028 24.2 0.5 30 15-44 25-57 (140)
39 2p57_A GTPase-activating prote 38.7 8.9 0.0003 24.3 0.6 30 15-44 37-69 (144)
40 2od1_A Protein CBFA2T1; zinc f 37.6 7.3 0.00025 20.5 0.1 30 5-40 3-32 (60)
41 2owa_A Arfgap-like finger doma 37.2 8.8 0.0003 24.0 0.4 30 15-44 36-68 (138)
42 3j20_P 30S ribosomal protein S 36.3 36 0.0012 18.0 2.8 23 16-38 19-42 (56)
43 1wg2_A Zinc finger (AN1-like) 36.0 18 0.0006 19.8 1.5 36 3-42 3-38 (64)
44 3dwd_A ADP-ribosylation factor 35.3 15 0.0005 23.4 1.2 31 14-44 37-70 (147)
45 3a1b_A DNA (cytosine-5)-methyl 33.1 20 0.00068 23.1 1.6 35 14-48 35-72 (159)
46 3iz6_N 40S ribosomal protein S 32.7 10 0.00035 20.2 0.2 23 16-38 19-42 (56)
47 2pv0_B DNA (cytosine-5)-methyl 32.6 23 0.00078 25.9 2.1 36 14-49 49-87 (386)
48 2yt5_A Metal-response element- 32.5 11 0.00037 20.0 0.3 30 14-43 5-34 (66)
49 2yqp_A Probable ATP-dependent 31.6 15 0.00053 19.7 0.8 15 16-36 20-34 (60)
50 3u5c_d S36, YS29, 40S ribosoma 30.5 13 0.00046 19.7 0.4 23 16-38 19-42 (56)
51 3sub_A ADP-ribosylation factor 29.7 14 0.00047 23.9 0.4 30 15-44 22-54 (163)
52 1wep_A PHF8; structural genomi 28.7 22 0.00077 19.5 1.2 40 5-46 2-41 (79)
53 3o47_A ADP-ribosylation factor 28.1 19 0.00064 25.0 0.9 30 15-44 37-69 (329)
54 1x62_A C-terminal LIM domain p 28.0 54 0.0018 17.5 2.7 18 10-27 10-27 (79)
55 2xzm_N RPS29E; ribosome, trans 26.8 47 0.0016 17.4 2.2 26 13-38 15-41 (55)
56 2dj8_A Protein CBFA2T1; zinc f 26.2 56 0.0019 16.8 2.5 22 13-40 13-34 (60)
57 1mm2_A MI2-beta; PHD, zinc fin 25.8 28 0.00097 18.2 1.2 26 13-43 7-32 (61)
58 3ql9_A Transcriptional regulat 24.8 29 0.00099 21.4 1.3 33 14-46 7-48 (129)
59 2k16_A Transcription initiatio 24.2 7.5 0.00026 21.2 -1.4 28 16-45 19-46 (75)
60 2vpb_A Hpygo1, pygopus homolog 23.8 9.7 0.00033 20.6 -1.0 34 14-48 7-41 (65)
61 1ei0_A P8MTCP1; helix-turn-hel 22.6 33 0.0011 16.5 1.0 11 75-85 6-16 (38)
62 2dj7_A Actin-binding LIM prote 22.6 82 0.0028 16.9 2.8 23 4-26 4-26 (80)
63 1fp0_A KAP-1 corepressor; PHD 22.6 42 0.0014 19.3 1.6 26 13-43 23-48 (88)
64 1wfh_A Zinc finger (AN1-like) 22.0 36 0.0012 18.5 1.1 36 3-42 3-38 (64)
65 1weo_A Cellulose synthase, cat 21.6 1E+02 0.0036 17.9 3.1 11 14-24 15-25 (93)
66 1ptq_A Protein kinase C delta 20.9 19 0.00065 17.7 -0.1 26 14-39 10-35 (50)
67 2ea6_A Ring finger protein 4; 20.7 67 0.0023 16.1 2.1 16 9-24 9-24 (69)
68 2ea5_A Cell growth regulator w 20.4 1.1E+02 0.0036 16.0 3.6 35 6-40 6-44 (68)
69 1wev_A Riken cDNA 1110020M19; 20.4 15 0.00052 20.9 -0.6 29 15-43 16-44 (88)
70 1xwh_A Autoimmune regulator; P 20.1 29 0.00099 18.4 0.5 25 14-43 7-31 (66)
No 1
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=171.32 Aligned_cols=73 Identities=53% Similarity=1.239 Sum_probs=69.6
Q ss_pred CceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCCC
Q psy6599 17 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93 (93)
Q Consensus 17 ~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~vq 93 (93)
+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...|..|++|||+|||++||++++||
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq 74 (78)
T 3cbb_A 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSR----QCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQ 74 (78)
T ss_dssp BCTTTSSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCS----CCCCSTTTTTTCHHHHHHHHHHHTCCGGGCC
T ss_pred CCeEeCCCCCceEeCCcchhhhceeeeEEEecccCccccccc----ccCcCccccccChhhhhHHHhHcCCCHHHcc
Confidence 699999999999999999999999999999999999998865 6999999999999999999999999999997
No 2
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=100.00 E-value=9.5e-35 Score=175.75 Aligned_cols=77 Identities=55% Similarity=1.194 Sum_probs=71.3
Q ss_pred CCCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCC
Q psy6599 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDF 92 (93)
Q Consensus 13 ~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~v 92 (93)
..+.+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...|..|++|||+|||++||++++|
T Consensus 5 ~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 80 (89)
T 2ebl_A 5 SSGIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANR----NCPIDQHHRNQCQYCRLKKCLKVGMRREAV 80 (89)
T ss_dssp CSSCBCTTTCSBCCSEETTEECCHHHHHHHHHHHTTTCCCCCSSCS----CCCCCSSSSSCCSHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCcEeCCCCcceEeCchhhHHhhhhhheeeeeccceecccCc----cCCcCccCccccccchHHHhhhccCCHHHc
Confidence 3456799999999999999999999999999999999999998865 699999999999999999999999999887
Q ss_pred C
Q psy6599 93 K 93 (93)
Q Consensus 93 q 93 (93)
|
T Consensus 81 q 81 (89)
T 2ebl_A 81 Q 81 (89)
T ss_dssp S
T ss_pred c
Confidence 6
No 3
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=100.00 E-value=1e-34 Score=174.34 Aligned_cols=77 Identities=48% Similarity=1.148 Sum_probs=71.9
Q ss_pred CCCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCC
Q psy6599 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDF 92 (93)
Q Consensus 13 ~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~v 92 (93)
..+.+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|++..|..|++|||+|||++||++++|
T Consensus 3 ~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 78 (85)
T 1dsz_B 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK----DCLIDKRQRNRCQYCRYQKCLAMGMKREAV 78 (85)
T ss_dssp SCCEECTTTCCEESSEETTEECCHHHHHHHHHHHHHTCCCCCSSCS----CCCCCTTTTTTCHHHHHHHHHHTTCCGGGS
T ss_pred CCCCCCCEeCCCCCceeeCccchHHHHHHHHHhhccccceeecccc----cccccccccccCcchhHHHHhHcCCCHHHh
Confidence 3457899999999999999999999999999999999999998865 599999999999999999999999999998
Q ss_pred C
Q psy6599 93 K 93 (93)
Q Consensus 93 q 93 (93)
|
T Consensus 79 q 79 (85)
T 1dsz_B 79 Q 79 (85)
T ss_dssp C
T ss_pred h
Confidence 7
No 4
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=100.00 E-value=1.7e-34 Score=175.91 Aligned_cols=78 Identities=45% Similarity=1.103 Sum_probs=71.0
Q ss_pred CCCCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCC
Q psy6599 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDD 91 (93)
Q Consensus 12 ~~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~ 91 (93)
+....+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...|..|++|||+|||++||++++
T Consensus 7 ~~~~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~ 82 (93)
T 2han_A 7 SGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENR----NCIIDKRQRNRCQYCRYQKCLTCGMKREA 82 (93)
T ss_dssp ---CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSCS----CCCCSTTTGGGCHHHHHHHHHHHTCCGGG
T ss_pred CCCCCCCcEeCCCCcCeecCcchhHHHHHHHHhhhccccCcCcCCCC----cCCcCCCCCccCccccHHHHhHhCCCHHH
Confidence 34457899999999999999999999999999999999999998865 69999999999999999999999999999
Q ss_pred CC
Q psy6599 92 FK 93 (93)
Q Consensus 92 vq 93 (93)
||
T Consensus 83 vq 84 (93)
T 2han_A 83 VQ 84 (93)
T ss_dssp SC
T ss_pred hh
Confidence 87
No 5
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=100.00 E-value=3.4e-34 Score=171.73 Aligned_cols=76 Identities=47% Similarity=1.022 Sum_probs=67.8
Q ss_pred CCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCCC
Q psy6599 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93 (93)
Q Consensus 14 ~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~vq 93 (93)
.+.+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...|..|++|||+|||++||++++||
T Consensus 3 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq 78 (84)
T 1hcq_A 3 ETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATN----QCTIDKNRRKSCQACRLRKCYEVGMMKGGIR 78 (84)
T ss_dssp CCCBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSS----CCCCSTTTTTTCHHHHHHHHHHHTCCC----
T ss_pred CCCcCcEECCCCCCeeeCccchHHhhhhhhhccccccccccccCc----cCCcCCcCcccChhhhhHHHhHcCCCHHHhc
Confidence 346899999999999999999999999999999999999998865 6999999999999999999999999999987
No 6
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=100.00 E-value=6.5e-34 Score=175.03 Aligned_cols=76 Identities=49% Similarity=1.154 Sum_probs=69.8
Q ss_pred CCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCCC
Q psy6599 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93 (93)
Q Consensus 14 ~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~vq 93 (93)
.+.+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...|..|++|||+|||++||++++||
T Consensus 2 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq 77 (99)
T 1ynw_B 2 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK----DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQ 77 (99)
T ss_dssp ---CBTTTBSCCCBCCTTSCBCSHHHHHHHHHHHTTCCCCCSSSS----CCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC
T ss_pred CCCCCceeCCCCcceeeCccchHHHHHHHHhhhccccccccCCCC----cccccccCCccCccccHHHHhHcCCCHHHhh
Confidence 357899999999999999999999999999999999999998875 5999999999999999999999999999997
No 7
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=100.00 E-value=6e-34 Score=171.35 Aligned_cols=75 Identities=52% Similarity=1.136 Sum_probs=69.6
Q ss_pred CCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCCC
Q psy6599 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93 (93)
Q Consensus 15 ~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~vq 93 (93)
..+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...+..|++|||+|||++||++++||
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq 78 (86)
T 1dsz_A 4 YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDK----NCIINKVTRNRCQYCRLQKCFEVGMSKESVR 78 (86)
T ss_dssp --CCTTTCSCCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCS----CCCCSTTTGGGCHHHHHHHHHHTTCCGGGSC
T ss_pred CCCCcEECCCccceeeCchhHHHHHHHHHHHhhcccceeeccCC----ccccCccccccchhhhHHHHHHhCCCHHHhh
Confidence 46799999999999999999999999999999999999998865 6999999999999999999999999999987
No 8
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=100.00 E-value=8.7e-34 Score=171.57 Aligned_cols=74 Identities=45% Similarity=1.074 Sum_probs=69.9
Q ss_pred CCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCCC
Q psy6599 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93 (93)
Q Consensus 16 ~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~vq 93 (93)
++|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...+..|++|||+|||++||++++||
T Consensus 1 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq 74 (89)
T 1cit_A 1 GRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANK----DCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 74 (89)
T ss_dssp CCCSSSCCCCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSSS----CCCCSTTTTTTCHHHHHHHHHHTTCCGGGSC
T ss_pred CCCeEeCCCCcceEeCccchhhhhhhceeeEEecceeeeccCC----ccccCCCCcccChhhhhHHHhHcCCCHHHee
Confidence 4799999999999999999999999999999999999998865 6999999999999999999999999999987
No 9
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=100.00 E-value=1.1e-33 Score=178.34 Aligned_cols=81 Identities=38% Similarity=0.819 Sum_probs=69.0
Q ss_pred CCCCCCCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCC
Q psy6599 9 LGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMN 88 (93)
Q Consensus 9 ~~~~~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~ 88 (93)
.+++..+.+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...|..|++|||+|||++||+
T Consensus 23 ~~~~~~~~~C~VCgd~a~G~HyGv~sC~aCk~FFRRsv~~~~~y~C~~~~----~C~i~~~~r~~Cr~CRl~KCl~vGM~ 98 (117)
T 4hn5_A 23 NASNAPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRN----DCIIDKIRRKNCPACRYRKCLQAGMN 98 (117)
T ss_dssp -------CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSS----CCCCSTTTTTTCHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcCCcCCCcCcccccCCcccchhhhhhhcceecCCceecCCCC----ccccCcccccCCcccchHHHhHcCCC
Confidence 33445667899999999999999999999999999999999999998765 69999999999999999999999999
Q ss_pred CCCCC
Q psy6599 89 KDDFK 93 (93)
Q Consensus 89 ~~~vq 93 (93)
+++||
T Consensus 99 ~~avq 103 (117)
T 4hn5_A 99 LEARK 103 (117)
T ss_dssp TTC--
T ss_pred HHHhc
Confidence 99987
No 10
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.98 E-value=2.9e-33 Score=170.76 Aligned_cols=75 Identities=45% Similarity=1.077 Sum_probs=69.6
Q ss_pred CCCceecCCCCceeeeCcccchhhhhhhhhhhccCcee-ccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCCC
Q psy6599 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVY-TCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93 (93)
Q Consensus 15 ~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~-~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~vq 93 (93)
..+|.|||++++|+||||.+|+||++||||++..+..| .|..++ +|.|+...|..|++|||+|||++||++++||
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq 82 (94)
T 1a6y_A 7 VLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNE----NCSIVRINRNRCQQCRFKKCLSVGMSRDAVR 82 (94)
T ss_dssp -CBCTTTSSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCCSSTT----CCCCCTTTTTSCHHHHHHHHTTTTCCSTTCC
T ss_pred CCcCcEeCCCCcceEeCccchhhhhhehheeeecccceEEccCCC----CCccCccccccccchhHHHhhHccCCHHHhc
Confidence 46799999999999999999999999999999998888 598765 6999999999999999999999999999997
No 11
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.97 E-value=2.2e-33 Score=176.15 Aligned_cols=79 Identities=44% Similarity=1.025 Sum_probs=70.5
Q ss_pred CCCCCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCC
Q psy6599 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90 (93)
Q Consensus 11 ~~~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~ 90 (93)
....+.+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...|..|++|||+|||++||+++
T Consensus 5 ~~~~~~~C~VCgd~a~G~HyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~R~~Cr~CR~~KCl~vGM~~~ 80 (113)
T 2a66_A 5 DEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQ----NCQIDKTQRKRCPYCRFQKCLSVGMKLE 80 (113)
T ss_dssp -----CBCTTTCCBEEEEETTEEEEHHHHHHHHHHHHTTCCCCCSSCS----CCCCCTTTTTTCHHHHHHHHHHTTCCGG
T ss_pred CCCCCCCCcEeCCCCcceeeCcccHHHHHHHHhhhhhccccccccccc----cCCcCCCccccccchhHHHHhHhCCCHH
Confidence 344567899999999999999999999999999999999999998865 6999999999999999999999999999
Q ss_pred CCC
Q psy6599 91 DFK 93 (93)
Q Consensus 91 ~vq 93 (93)
+||
T Consensus 81 ~vq 83 (113)
T 2a66_A 81 AVR 83 (113)
T ss_dssp GSC
T ss_pred Hhc
Confidence 986
No 12
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.97 E-value=3.9e-33 Score=176.53 Aligned_cols=79 Identities=42% Similarity=0.949 Sum_probs=72.7
Q ss_pred CCCCCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCC
Q psy6599 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90 (93)
Q Consensus 11 ~~~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~ 90 (93)
+.....+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...+..|++|||+|||++||+++
T Consensus 4 p~~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~ 79 (119)
T 2han_B 4 PRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGR----ACEMDMYMRRKCQECRLKKCLAVGMRPE 79 (119)
T ss_dssp -CCCSCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHTTCCCCCSSCS----CCCCSTTGGGTCHHHHHHHHHHTTCCGG
T ss_pred CCCCCCcCeEeCCcCCcceECchhHHhhHHhhhhheEecccccccccc----ccccCccccccchhhHHHHHHHhCCCHH
Confidence 345678899999999999999999999999999999999999998875 5999999999999999999999999999
Q ss_pred CCC
Q psy6599 91 DFK 93 (93)
Q Consensus 91 ~vq 93 (93)
+||
T Consensus 80 ~v~ 82 (119)
T 2han_B 80 CVV 82 (119)
T ss_dssp GSS
T ss_pred Hcc
Confidence 886
No 13
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.97 E-value=8.2e-34 Score=174.30 Aligned_cols=77 Identities=43% Similarity=0.899 Sum_probs=71.5
Q ss_pred CCCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCC
Q psy6599 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDF 92 (93)
Q Consensus 13 ~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~v 92 (93)
+...+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...+..|++|||+|||++||++++|
T Consensus 2 ~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 77 (98)
T 1lo1_A 2 IPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATN----ECEITKRRRKSCQACRFMKALKVGMLKEGV 77 (98)
T ss_dssp CCCCEETTTTEECSEESSSSEECHHHHHHHHHHHHTTCCCCCSSCS----CCCCCHHHHHHCHHHHHHHHHHHTCCGGGS
T ss_pred CCCCCCcEeCCCCcCeeeCccchhhhhhhheeeecccCccccCccc----cccccccccccccchhHHHHhHcCCCHHHe
Confidence 3457899999999999999999999999999999999999998865 599999888999999999999999999998
Q ss_pred C
Q psy6599 93 K 93 (93)
Q Consensus 93 q 93 (93)
|
T Consensus 78 q 78 (98)
T 1lo1_A 78 R 78 (98)
T ss_dssp C
T ss_pred e
Confidence 6
No 14
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.97 E-value=6.5e-33 Score=171.67 Aligned_cols=75 Identities=48% Similarity=1.072 Sum_probs=69.5
Q ss_pred CCCceecCCCCceeeeCcccchhhhhhhhhhhccCc--eeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCC
Q psy6599 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNR--VYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDF 92 (93)
Q Consensus 15 ~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~--~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~v 92 (93)
+++|.|||++++|+||||.+|+||++||||++..+. .|.|..++ +|.|+...+..|++|||+|||++||++++|
T Consensus 1 ~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 76 (103)
T 2nll_B 1 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEG----KCVIDKVTRNQCQECRFKKCIYVGMATDLV 76 (103)
T ss_dssp CCBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCGGGCCCSSCT----TCCCSTTTTTSCHHHHHHHHHHTTCCGGGS
T ss_pred CCCCeEeCCcCcCeecCcccHHHhhhhheecccccccchhhhhccC----CcCcCccCccccchhhhHhhhHhCCCHHHh
Confidence 367999999999999999999999999999999875 78998765 699999999999999999999999999998
Q ss_pred C
Q psy6599 93 K 93 (93)
Q Consensus 93 q 93 (93)
|
T Consensus 77 ~ 77 (103)
T 2nll_B 77 L 77 (103)
T ss_dssp C
T ss_pred h
Confidence 7
No 15
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.97 E-value=6e-33 Score=173.55 Aligned_cols=77 Identities=42% Similarity=0.963 Sum_probs=70.2
Q ss_pred CCCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCC
Q psy6599 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDF 92 (93)
Q Consensus 13 ~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~v 92 (93)
..+.+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...|..|++|||+|||++||++++|
T Consensus 4 ~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v 79 (110)
T 1kb2_A 4 NVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNG----DCRITKDNRRHCQACRLKRCVDIGMMKEFI 79 (110)
T ss_dssp ---CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCS----CCCCCTTTTTTCHHHHHHHHHHTTCCGGGS
T ss_pred ccCCCCcEeCCCCCceEeCchhHhhhhhhheeeeecccceeeCCCC----CccCCcccceecccccHhhhhhcCCcHHhc
Confidence 3457899999999999999999999999999999999999998875 699999999999999999999999999987
Q ss_pred C
Q psy6599 93 K 93 (93)
Q Consensus 93 q 93 (93)
|
T Consensus 80 ~ 80 (110)
T 1kb2_A 80 L 80 (110)
T ss_dssp C
T ss_pred c
Confidence 6
No 16
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.97 E-value=2.7e-33 Score=169.76 Aligned_cols=75 Identities=41% Similarity=0.912 Sum_probs=70.1
Q ss_pred CCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCCC
Q psy6599 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93 (93)
Q Consensus 15 ~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~vq 93 (93)
+.+|.|||++++|+||||.+|++|++||||++..+..|.|..++ +|.|+...+..|++|||+|||++||++++||
T Consensus 2 ~~~C~VCg~~a~g~hyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~----~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq 76 (90)
T 3g9m_A 2 SHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRN----DCIIDKIRRKNCPACRYRKCLQAGMNLEARK 76 (90)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHSCCCCCCSSSS----CCCCCTTGGGTCHHHHHHHHHHHTCCTTHHH
T ss_pred CCcCccCCCcCcccccCCccchhHhHHhhhhhhcCCceeCCCCC----ccccCcccccCCcchhhHHHHHcCCCHHHhc
Confidence 36799999999999999999999999999999999999998765 6999999999999999999999999999875
No 17
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.97 E-value=1.9e-32 Score=170.03 Aligned_cols=76 Identities=39% Similarity=0.914 Sum_probs=69.4
Q ss_pred CCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCCC
Q psy6599 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93 (93)
Q Consensus 14 ~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~vq 93 (93)
.+.+|.|||++++|+||||.+|+||++||||++..+..|.|..++ +|.|+...|..|++|||+|||++||++++++
T Consensus 6 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~k 81 (105)
T 1r4i_A 6 PQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRN----DCTIDKFRRKNCPSCRLRKCYEAGMTLGARK 81 (105)
T ss_dssp CCCBCSSSCSBEEEEETTEEEEHHHHHHHHHHHTSCCCCCCSSSS----CCCCCTTTTTTCHHHHHHHHHHHTCCSCC--
T ss_pred CCCCCcEeCCCCCceEeCCcchhhhhhhhceeEEecCceeeccCC----ccccCccccccchhchHHHHHhhhcccchhh
Confidence 357899999999999999999999999999999999999998865 6999999999999999999999999998764
No 18
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.95 E-value=6.2e-29 Score=186.05 Aligned_cols=76 Identities=49% Similarity=1.154 Sum_probs=70.6
Q ss_pred CCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCCC
Q psy6599 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDFK 93 (93)
Q Consensus 14 ~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~vq 93 (93)
....|.|||++++|+||||.+|+|||+||||++..+..|.|+.++ +|.+++..|.+|++|||+||+++||++++||
T Consensus 136 ~~~~C~VCg~~a~g~hygv~sC~~Ck~FFrR~~~~~~~~~C~~~~----~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq 211 (467)
T 3dzy_A 136 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK----DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQ 211 (467)
T ss_dssp -CEECTTTSSEECSEETTEECCHHHHHHHHHHHHTTCCCCCSSSS----CCCCCSSSSSSCHHHHHHHHHHTTCCGGGCC
T ss_pred CCCcceeCCCCCCCCcCCCcchhhhhHhccccccCCCceeCCCCC----CCCCCcccccccccchhhhhhhccccchhhh
Confidence 445699999999999999999999999999999999999999875 6999999999999999999999999999886
No 19
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.94 E-value=5.7e-28 Score=178.73 Aligned_cols=76 Identities=43% Similarity=1.092 Sum_probs=67.1
Q ss_pred CCCCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceec-cccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCC
Q psy6599 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYT-CKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKD 90 (93)
Q Consensus 12 ~~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~-C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~ 90 (93)
+....+|.|||++++|+||||.+|+||++||||++..+..|. |. ++|.+++..|+.|++|||+||+++||+++
T Consensus 47 ~~~~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~~~~~~~~~~c~------~~C~~~~~~r~~C~~CR~~kCl~~GM~~~ 120 (419)
T 3dzy_D 47 SLMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCD------LNCRIHKKSRNKCQYCRFQKCLAVGMSHN 120 (419)
T ss_dssp ---CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHHHTTTCCCCCCC------SCCCCCTTGGGTCHHHHHHHHHHTTCCGG
T ss_pred CCCCCcCeECCCcCCCCccCcccchhhhHHHccchhccccccccc------CCCCcccccCccchhhhHHHHhhcccchh
Confidence 344567999999999999999999999999999999888775 53 26999999999999999999999999999
Q ss_pred CCC
Q psy6599 91 DFK 93 (93)
Q Consensus 91 ~vq 93 (93)
+||
T Consensus 121 ~vq 123 (419)
T 3dzy_D 121 AIR 123 (419)
T ss_dssp GCC
T ss_pred hee
Confidence 886
No 20
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.82 E-value=2.4e-21 Score=116.28 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=55.2
Q ss_pred CCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhHHhcCCCCCC
Q psy6599 23 DRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCFMSAMNKDDF 92 (93)
Q Consensus 23 ~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~~v 92 (93)
.++.+.||+++ |.+|++||||++ .+..|.|+.++ +|.|++..|+.|++|||+|||+|||+...+
T Consensus 12 ~p~~g~h~c~v-Cgd~asfFRRt~-~~~~y~C~~~~----~C~i~~~~R~~C~~CR~qKCl~VgM~~~~~ 75 (87)
T 2lze_A 12 EPRGGKHICAI-CGNNAEDYKHTD-MDLTYTDRDYK----NCESYHKCSDLCQYCRYQKDLAIHHQHHHG 75 (87)
T ss_dssp CCSCCSSSCSS-SSSSSSSCTTTT-TSCTTTSCCCC----CCCCSSCCSSSCSGGGTSCCHHHHCSSCCC
T ss_pred CCCCCCEEccC-CCCccceECccc-CCCeeEcCCCC----ccccCCCccCcCCcccChhhccCcCEeccC
Confidence 46678888876 889999999985 56778998775 699999999999999999999999988654
No 21
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=75.10 E-value=1.8 Score=23.70 Aligned_cols=34 Identities=21% Similarity=0.514 Sum_probs=24.7
Q ss_pred CCCCCCceecCCCCce----eeeCcccchhhhhhhhhh
Q psy6599 12 RLLDIPCKVCGDRSSG----KHYGIYSCDGCSGFFKRS 45 (93)
Q Consensus 12 ~~~~~~C~VCg~~~~~----~hyGv~~C~~C~~FFrR~ 45 (93)
...+..|..|+...+- -..|...|+||..+|+..
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~ 41 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 41 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHH
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHc
Confidence 3455679999876542 246778999999999754
No 22
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=74.48 E-value=1.1 Score=22.64 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=20.8
Q ss_pred CCceecCCCCce----eeeCcccchhhhhhhhhh
Q psy6599 16 IPCKVCGDRSSG----KHYGIYSCDGCSGFFKRS 45 (93)
Q Consensus 16 ~~C~VCg~~~~~----~hyGv~~C~~C~~FFrR~ 45 (93)
..|..|+...+- -..|...|+||..+|+..
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 35 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 35 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHh
Confidence 467888765432 135777899999988753
No 23
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=63.78 E-value=3.6 Score=21.05 Aligned_cols=30 Identities=27% Similarity=0.672 Sum_probs=20.9
Q ss_pred CCCceecCCCCce----eeeCcccchhhhhhhhh
Q psy6599 15 DIPCKVCGDRSSG----KHYGIYSCDGCSGFFKR 44 (93)
Q Consensus 15 ~~~C~VCg~~~~~----~hyGv~~C~~C~~FFrR 44 (93)
...|..|+...+- -..|...|+||..+|+.
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~ 37 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKM 37 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHHHHHH
Confidence 4568888765432 12466789999998875
No 24
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=59.49 E-value=5.2 Score=22.00 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=23.4
Q ss_pred CCCCCceecCCCCce----eeeCcccchhhhhhhhh
Q psy6599 13 LLDIPCKVCGDRSSG----KHYGIYSCDGCSGFFKR 44 (93)
Q Consensus 13 ~~~~~C~VCg~~~~~----~hyGv~~C~~C~~FFrR 44 (93)
..+..|..|+...+- -..|...|+||..+|+.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~ 42 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 42 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHH
Confidence 456789999876542 13566789999998874
No 25
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=58.13 E-value=5.4 Score=22.91 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=20.9
Q ss_pred CCCCceecCCCCceeeeCcccchhhhhhhhh
Q psy6599 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKR 44 (93)
Q Consensus 14 ~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR 44 (93)
....|.||++..+...-..+.|.+|...|.-
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~ 54 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQ 54 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhc
Confidence 4578999998753333346789999765543
No 26
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.54 E-value=8.4 Score=20.50 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCCceecCC
Q psy6599 5 TDNSLGDRLLDIPCKVCGD 23 (93)
Q Consensus 5 ~~~~~~~~~~~~~C~VCg~ 23 (93)
++.+.+-++....|.||+.
T Consensus 2 ~~~~~~~~~~~~~C~vC~~ 20 (56)
T 2yqq_A 2 SSGSSGLKCSTVVCVICLE 20 (56)
T ss_dssp CCCCCCCCCCCCCCTTTCS
T ss_pred CCcccccCCCCCccCcCcC
Confidence 4445555666678999998
No 27
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=53.51 E-value=7.6 Score=21.67 Aligned_cols=31 Identities=16% Similarity=0.463 Sum_probs=21.2
Q ss_pred CCCCceecCCCCc-ee-----eeCcccchhhhhhhhhh
Q psy6599 14 LDIPCKVCGDRSS-GK-----HYGIYSCDGCSGFFKRS 45 (93)
Q Consensus 14 ~~~~C~VCg~~~~-~~-----hyGv~~C~~C~~FFrR~ 45 (93)
.+..|..|+...+ .. .-| ..|+||..+|+..
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 4577999987643 22 224 7899999998754
No 28
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.06 E-value=13 Score=21.39 Aligned_cols=64 Identities=22% Similarity=0.437 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCCCceecCCCCceeeeCcccchhhhhhhhhhhccCceeccccCCCCCCCCCCCCCCCCCCcchHHHHhH
Q psy6599 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRACRLNKCF 83 (93)
Q Consensus 5 ~~~~~~~~~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~~~~~~~~C~~~~~~~~~C~i~~~~r~~C~~CR~~KCl 83 (93)
.+.+..+......|.||+..... --.+.|..|...|.-. |..... . .+ ......|..|+..++.
T Consensus 6 ~~~s~~~~~~~~~C~vC~~~~~~--~~ll~CD~C~~~~H~~--------Cl~Ppl---~-~~-P~g~W~C~~C~~~~~~ 69 (92)
T 2e6r_A 6 SGHSSAQFIDSYICQVCSRGDED--DKLLFCDGCDDNYHIF--------CLLPPL---P-EI-PRGIWRCPKCILAECK 69 (92)
T ss_dssp CCCCCCCCCCCCCCSSSCCSGGG--GGCEECTTTCCEECSS--------SSSSCC---S-SC-CSSCCCCHHHHHHHHS
T ss_pred CCCchhhccCCCCCccCCCcCCC--CCEEEcCCCCchhccc--------cCCCCc---c-cC-CCCCcCCccCcCcccc
Confidence 34445555666789999987531 1366788887655322 332110 0 01 1124579999888764
No 29
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=50.11 E-value=6.1 Score=21.49 Aligned_cols=27 Identities=30% Similarity=0.781 Sum_probs=18.9
Q ss_pred CCCCceecCCCCceeeeCcccchhhhhhhhhh
Q psy6599 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRS 45 (93)
Q Consensus 14 ~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~ 45 (93)
....|.||++... ++.|..|...|.-.
T Consensus 11 ~~~~C~vC~~~~~-----ll~Cd~C~~~~H~~ 37 (66)
T 2lri_C 11 PGARCGVCGDGTD-----VLRCTHCAAAFHWR 37 (66)
T ss_dssp TTCCCTTTSCCTT-----CEECSSSCCEECHH
T ss_pred CCCCcCCCCCCCe-----EEECCCCCCceecc
Confidence 4466999997653 67899997665433
No 30
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=44.42 E-value=17 Score=19.11 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=21.0
Q ss_pred CCCCCCCCCCceecCCCCcee--eeCcccchhhhh
Q psy6599 8 SLGDRLLDIPCKVCGDRSSGK--HYGIYSCDGCSG 40 (93)
Q Consensus 8 ~~~~~~~~~~C~VCg~~~~~~--hyGv~~C~~C~~ 40 (93)
|.+.-+....|+.|+.....+ .-|...|..|..
T Consensus 4 ~~~~ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 4 SRLDALPRVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CSCCCCSCCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred chhhccccccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 344444445799998754443 346788888864
No 31
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=43.65 E-value=13 Score=23.39 Aligned_cols=32 Identities=19% Similarity=0.641 Sum_probs=25.1
Q ss_pred CCCCceecCCCCc-------eee--eCcccchhhhhhhhhh
Q psy6599 14 LDIPCKVCGDRSS-------GKH--YGIYSCDGCSGFFKRS 45 (93)
Q Consensus 14 ~~~~C~VCg~~~~-------~~h--yGv~~C~~C~~FFrR~ 45 (93)
....|..||...+ -.| +++..|..|+.||...
T Consensus 13 ~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~ 53 (142)
T 2lbm_A 13 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSD 53 (142)
T ss_dssp CCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHS
T ss_pred CCCEecCCCCccccccccchhcCCCccccccHHHHHHHhcC
Confidence 4567999998762 347 9999999999988654
No 32
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.22 E-value=8.3 Score=24.21 Aligned_cols=29 Identities=21% Similarity=0.657 Sum_probs=23.8
Q ss_pred CCceecCCCCc---eeeeCcccchhhhhhhhh
Q psy6599 16 IPCKVCGDRSS---GKHYGIYSCDGCSGFFKR 44 (93)
Q Consensus 16 ~~C~VCg~~~~---~~hyGv~~C~~C~~FFrR 44 (93)
..|.-||.+.. ..+||+..|-.|.+..|.
T Consensus 30 ~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~ 61 (141)
T 2crr_A 30 KYCADCEAKGPRWASWNIGVFICIRCAGIHRN 61 (141)
T ss_dssp SSCSSSCCSSCCSEETTTTEECCHHHHHHHHH
T ss_pred CcCCCCCCCCCCeEEeccCeEEhhhhhHhHhc
Confidence 56999997653 468999999999998765
No 33
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.34 E-value=9 Score=24.36 Aligned_cols=31 Identities=29% Similarity=0.756 Sum_probs=24.9
Q ss_pred CCCCceecCCCCc---eeeeCcccchhhhhhhhh
Q psy6599 14 LDIPCKVCGDRSS---GKHYGIYSCDGCSGFFKR 44 (93)
Q Consensus 14 ~~~~C~VCg~~~~---~~hyGv~~C~~C~~FFrR 44 (93)
....|.-||.+.. ..+||++.|..|.+..|.
T Consensus 28 ~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~ 61 (149)
T 2crw_A 28 TNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRS 61 (149)
T ss_dssp TTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHH
T ss_pred CCCcCCCCcCCCCCcEEeccCEEEchhcchhhcc
Confidence 3467999997653 468999999999998765
No 34
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.88 E-value=9.6 Score=19.70 Aligned_cols=28 Identities=25% Similarity=0.587 Sum_probs=19.5
Q ss_pred CCCCCCCceecCCCCceeeeCcccchhhhhhhh
Q psy6599 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFK 43 (93)
Q Consensus 11 ~~~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFr 43 (93)
.......|.||++.. ..+.|..|...|.
T Consensus 5 ~~~~~~~C~vC~~~g-----~ll~Cd~C~~~~H 32 (56)
T 2yql_A 5 SSGHEDFCSVCRKSG-----QLLMCDTCSRVYH 32 (56)
T ss_dssp CCSSCCSCSSSCCSS-----CCEECSSSSCEEC
T ss_pred cCCCCCCCccCCCCC-----eEEEcCCCCcceE
Confidence 344456799999853 4677888876654
No 35
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=41.18 E-value=6.7 Score=21.64 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=20.9
Q ss_pred CCCCCCceecCCCCceeeeCcccchhhhhhhh
Q psy6599 12 RLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFK 43 (93)
Q Consensus 12 ~~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFr 43 (93)
......|.||++..+...-..+.|.+|...|-
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H 44 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVH 44 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccc
Confidence 34557799999875333334667888876553
No 36
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=40.71 E-value=7.2 Score=24.27 Aligned_cols=31 Identities=19% Similarity=0.594 Sum_probs=24.7
Q ss_pred CCCCceecCCCCc---eeeeCcccchhhhhhhhh
Q psy6599 14 LDIPCKVCGDRSS---GKHYGIYSCDGCSGFFKR 44 (93)
Q Consensus 14 ~~~~C~VCg~~~~---~~hyGv~~C~~C~~FFrR 44 (93)
....|.-||.+.. ..+||+..|-.|.+..|.
T Consensus 26 ~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~ 59 (134)
T 2iqj_A 26 DNKFCADCQSKGPRWASWNIGVFICIRCAGIHRN 59 (134)
T ss_dssp GGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhc
Confidence 3466999997653 468999999999998765
No 37
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=40.25 E-value=23 Score=21.34 Aligned_cols=33 Identities=18% Similarity=0.482 Sum_probs=24.4
Q ss_pred CCCCCceecCCCCce----eeeCcccchhhhhhhhhh
Q psy6599 13 LLDIPCKVCGDRSSG----KHYGIYSCDGCSGFFKRS 45 (93)
Q Consensus 13 ~~~~~C~VCg~~~~~----~hyGv~~C~~C~~FFrR~ 45 (93)
.....|..|+...+- -..|...|+||..||+..
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~ 93 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 93 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHH
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHh
Confidence 345779999876532 246677899999999765
No 38
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=38.76 E-value=8.3 Score=24.17 Aligned_cols=30 Identities=27% Similarity=0.690 Sum_probs=24.1
Q ss_pred CCCceecCCCCc---eeeeCcccchhhhhhhhh
Q psy6599 15 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKR 44 (93)
Q Consensus 15 ~~~C~VCg~~~~---~~hyGv~~C~~C~~FFrR 44 (93)
...|.-||.+.. ..+||++.|-.|.+..|.
T Consensus 25 N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~ 57 (140)
T 2olm_A 25 NRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRG 57 (140)
T ss_dssp GGSCTTTCSSCCCEEETTTTEEECHHHHHHHTT
T ss_pred CCcCCCCCCCCCCceeeccCEEEchhccchhcc
Confidence 467999997653 458999999999998764
No 39
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=38.73 E-value=8.9 Score=24.28 Aligned_cols=30 Identities=30% Similarity=0.851 Sum_probs=24.3
Q ss_pred CCCceecCCCCc---eeeeCcccchhhhhhhhh
Q psy6599 15 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKR 44 (93)
Q Consensus 15 ~~~C~VCg~~~~---~~hyGv~~C~~C~~FFrR 44 (93)
...|.-||.+.. ..+||++.|..|.+..|.
T Consensus 37 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~ 69 (144)
T 2p57_A 37 NKACFDCGAKNPSWASITYGVFLCIDCSGVHRS 69 (144)
T ss_dssp GGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHH
T ss_pred CCcCCCCcCCCCCeEEeccCEEEhhhchHHHcC
Confidence 466999997653 468999999999998765
No 40
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=37.64 E-value=7.3 Score=20.52 Aligned_cols=30 Identities=20% Similarity=0.537 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCceecCCCCceeeeCcccchhhhh
Q psy6599 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSG 40 (93)
Q Consensus 5 ~~~~~~~~~~~~~C~VCg~~~~~~hyGv~~C~~C~~ 40 (93)
++.+.++......|.+|+..+ ...|..|+.
T Consensus 3 ~~~~~~~~~~~~~C~~C~~~~------~~~Cs~C~~ 32 (60)
T 2od1_A 3 PNSGSPNSDSSESCWNCGRKA------SETCSGCNT 32 (60)
T ss_dssp --------CCSSCCTTTSSCC------CEECTTTSC
T ss_pred CcccCcCCCCCCccccCCCcc------cccCCCCCC
Confidence 444555666678899999853 345666654
No 41
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=37.24 E-value=8.8 Score=24.05 Aligned_cols=30 Identities=20% Similarity=0.615 Sum_probs=24.1
Q ss_pred CCCceecCCCCc---eeeeCcccchhhhhhhhh
Q psy6599 15 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKR 44 (93)
Q Consensus 15 ~~~C~VCg~~~~---~~hyGv~~C~~C~~FFrR 44 (93)
...|.-||.+.. ..+||++.|..|.+..|.
T Consensus 36 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~ 68 (138)
T 2owa_A 36 NRTCFDCESRNPTWLSLSFAVFICLNCSSDHRK 68 (138)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHT
T ss_pred CCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhC
Confidence 466999997653 458999999999998765
No 42
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.30 E-value=36 Score=17.98 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=17.9
Q ss_pred CCceecCCCCc-eeeeCcccchhh
Q psy6599 16 IPCKVCGDRSS-GKHYGIYSCDGC 38 (93)
Q Consensus 16 ~~C~VCg~~~~-~~hyGv~~C~~C 38 (93)
..|.|||.+.. -..||...|.-|
T Consensus 19 ~rC~vcGr~~g~iRkfGL~~cR~c 42 (56)
T 3j20_P 19 RRCIRCGQYGPIIRIQGLMLCRHC 42 (56)
T ss_dssp CCCSSSCCSSSCCCTTTCCCCHHH
T ss_pred eEeecCCCCcccccccCChHHHHH
Confidence 56999999854 347999888766
No 43
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=36.04 E-value=18 Score=19.80 Aligned_cols=36 Identities=17% Similarity=0.388 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCCCCceecCCCCceeeeCcccchhhhhhh
Q psy6599 3 VGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFF 42 (93)
Q Consensus 3 ~~~~~~~~~~~~~~~C~VCg~~~~~~hyGv~~C~~C~~FF 42 (93)
++++.+..+......|..|+....-. ...| -|..-|
T Consensus 3 ~~~~~~~~~~~~~~rC~~C~kkvgl~---~f~C-rCg~~F 38 (64)
T 1wg2_A 3 SGSSGPSRPVRPNNRCFSCNKKVGVM---GFKC-KCGSTF 38 (64)
T ss_dssp CCCCCSSCCSCCSCSCTTTCCCCTTS---CEEC-TTSCEE
T ss_pred CcccCCCCCCCcCCcChhhCCccccc---CeEe-ecCCEe
Confidence 44455555666678899999864322 2356 465544
No 44
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=35.26 E-value=15 Score=23.39 Aligned_cols=31 Identities=32% Similarity=0.661 Sum_probs=24.7
Q ss_pred CCCCceecCCCCc---eeeeCcccchhhhhhhhh
Q psy6599 14 LDIPCKVCGDRSS---GKHYGIYSCDGCSGFFKR 44 (93)
Q Consensus 14 ~~~~C~VCg~~~~---~~hyGv~~C~~C~~FFrR 44 (93)
....|.-||.+.. ...||++.|..|.+..|.
T Consensus 37 ~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~ 70 (147)
T 3dwd_A 37 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRG 70 (147)
T ss_dssp TTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCCccCCCCCCCCCeEEecccEeEhHhhChHHhc
Confidence 3466999998654 468999999999998764
No 45
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=33.06 E-value=20 Score=23.06 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=27.2
Q ss_pred CCCCceecCCCC-ceee--eCcccchhhhhhhhhhhcc
Q psy6599 14 LDIPCKVCGDRS-SGKH--YGIYSCDGCSGFFKRSIHR 48 (93)
Q Consensus 14 ~~~~C~VCg~~~-~~~h--yGv~~C~~C~~FFrR~~~~ 48 (93)
+...|..||... .-.| |.|..|..|+.||......
T Consensus 35 ~e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~y~e~~f~ 72 (159)
T 3a1b_A 35 IEDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQ 72 (159)
T ss_dssp GGGSBTTTCCSCCCEECSSBSSEECHHHHHHHHHHTTC
T ss_pred ccCcccCCCCcCccccCCCccchhhHHHHHHHhhcccc
Confidence 567899999854 3344 8999999999999876644
No 46
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=32.73 E-value=10 Score=20.16 Aligned_cols=23 Identities=35% Similarity=1.034 Sum_probs=17.7
Q ss_pred CCceecCCCCce-eeeCcccchhh
Q psy6599 16 IPCKVCGDRSSG-KHYGIYSCDGC 38 (93)
Q Consensus 16 ~~C~VCg~~~~~-~hyGv~~C~~C 38 (93)
..|.|||.+..- ..||...|.-|
T Consensus 19 ~rC~vcGr~~g~iRkfGL~~cR~c 42 (56)
T 3iz6_N 19 RVCRVCGNSHGLIRKYGLMCCRQC 42 (56)
T ss_dssp CCCSSCCCSCCCTTTTSCTTHHHH
T ss_pred ceeecCCCCcccccccCCcHHHHH
Confidence 569999998543 47998888766
No 47
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=32.65 E-value=23 Score=25.92 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=27.3
Q ss_pred CCCCceecCCCCc-ee--eeCcccchhhhhhhhhhhccC
Q psy6599 14 LDIPCKVCGDRSS-GK--HYGIYSCDGCSGFFKRSIHRN 49 (93)
Q Consensus 14 ~~~~C~VCg~~~~-~~--hyGv~~C~~C~~FFrR~~~~~ 49 (93)
....|..||.... -. .|.+..|..|+.+|....-..
T Consensus 49 ~e~~C~~CG~~~~~~~HPl~~v~lC~~Ck~~y~~~~f~~ 87 (386)
T 2pv0_B 49 IEDICICCGSLQVHTQHPLFEGGICAPCKDKFLDALFLY 87 (386)
T ss_dssp GGGSBTTTCCSCCCSBCSSBSSBCCHHHHHHHHTTTTCB
T ss_pred ccceeCCCCCcCccccCCCcCcchhhHHHHHHhccCccc
Confidence 4467999998642 33 499999999999998776443
No 48
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=32.53 E-value=11 Score=19.98 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=19.3
Q ss_pred CCCCceecCCCCceeeeCcccchhhhhhhh
Q psy6599 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFK 43 (93)
Q Consensus 14 ~~~~C~VCg~~~~~~hyGv~~C~~C~~FFr 43 (93)
....|.||+...+.-.-..+.|.+|..-|.
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H 34 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYH 34 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEE
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHH
Confidence 456799999764332224667888876553
No 49
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.64 E-value=15 Score=19.71 Aligned_cols=15 Identities=60% Similarity=1.345 Sum_probs=10.5
Q ss_pred CCceecCCCCceeeeCcccch
Q psy6599 16 IPCKVCGDRSSGKHYGIYSCD 36 (93)
Q Consensus 16 ~~C~VCg~~~~~~hyGv~~C~ 36 (93)
+.|.||| .||...|.
T Consensus 20 PvCvvCG------ryGeYICd 34 (60)
T 2yqp_A 20 PICVVCG------RYGEYICD 34 (60)
T ss_dssp CCCSSSS------SCCSEECS
T ss_pred ceEEEec------Cccceeec
Confidence 5599999 46665554
No 50
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=30.48 E-value=13 Score=19.73 Aligned_cols=23 Identities=30% Similarity=0.934 Sum_probs=17.6
Q ss_pred CCceecCCCCce-eeeCcccchhh
Q psy6599 16 IPCKVCGDRSSG-KHYGIYSCDGC 38 (93)
Q Consensus 16 ~~C~VCg~~~~~-~hyGv~~C~~C 38 (93)
..|.|||.+..- ..||...|.-|
T Consensus 19 ~rC~vcGr~~g~iRkfGl~lcR~c 42 (56)
T 3u5c_d 19 RQCRVCSSHTGLIRKYGLNICRQC 42 (56)
T ss_dssp CCCTTTCCCSSEECGGGCCEEHHH
T ss_pred ceeecCCCCcccccccCcchhHHH
Confidence 569999988644 47998888766
No 51
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=29.74 E-value=14 Score=23.91 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=24.1
Q ss_pred CCCceecCCCCc---eeeeCcccchhhhhhhhh
Q psy6599 15 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKR 44 (93)
Q Consensus 15 ~~~C~VCg~~~~---~~hyGv~~C~~C~~FFrR 44 (93)
...|.-||.+.. ...||++.|..|.+..|.
T Consensus 22 N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~ 54 (163)
T 3sub_A 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRS 54 (163)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCccccCCCCCCCeEEecCCeeEHHhhhHHhcC
Confidence 456888988654 458999999999998764
No 52
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.67 E-value=22 Score=19.55 Aligned_cols=40 Identities=25% Similarity=0.534 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCceecCCCCceeeeCcccchhhhhhhhhhh
Q psy6599 5 TDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSI 46 (93)
Q Consensus 5 ~~~~~~~~~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~~ 46 (93)
+..+..+.....-| ||+.+..... -.+.|..|..+|.-..
T Consensus 2 ~~~~~~~~~~~~~C-~C~~~~d~~~-~MIqCd~C~~WfH~~C 41 (79)
T 1wep_A 2 SSGSSGMALVPVYC-LCRQPYNVNH-FMIECGLCQDWFHGSC 41 (79)
T ss_dssp CSCCCCCCCCCCCS-TTSCSCCSSS-CEEEBTTTCCEEEHHH
T ss_pred CCCccCccCCccEE-EcCCccCCCC-ceEEcCCCCCcEEeee
Confidence 34445555566778 8998764211 2457888887775443
No 53
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=28.14 E-value=19 Score=24.96 Aligned_cols=30 Identities=33% Similarity=0.714 Sum_probs=24.6
Q ss_pred CCCceecCCCCc---eeeeCcccchhhhhhhhh
Q psy6599 15 DIPCKVCGDRSS---GKHYGIYSCDGCSGFFKR 44 (93)
Q Consensus 15 ~~~C~VCg~~~~---~~hyGv~~C~~C~~FFrR 44 (93)
...|.-||.+.. ..+||+..|..|.+..|.
T Consensus 37 n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~ 69 (329)
T 3o47_A 37 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRG 69 (329)
T ss_dssp TTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHH
T ss_pred CCcCCCCCCCCCCeEEecCCEEEChhhhhhhcc
Confidence 456999998654 359999999999998775
No 54
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.95 E-value=54 Score=17.47 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=12.0
Q ss_pred CCCCCCCCceecCCCCce
Q psy6599 10 GDRLLDIPCKVCGDRSSG 27 (93)
Q Consensus 10 ~~~~~~~~C~VCg~~~~~ 27 (93)
+.......|..|+.+..+
T Consensus 10 ~~~~~~~~C~~C~~~I~~ 27 (79)
T 1x62_A 10 GNAQKLPMCDKCGTGIVG 27 (79)
T ss_dssp CCCCCCCCCSSSCCCCCS
T ss_pred CCCCCCCccccCCCCccC
Confidence 344455789999986543
No 55
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=26.76 E-value=47 Score=17.43 Aligned_cols=26 Identities=31% Similarity=0.784 Sum_probs=19.3
Q ss_pred CCCCCceecCCCCc-eeeeCcccchhh
Q psy6599 13 LLDIPCKVCGDRSS-GKHYGIYSCDGC 38 (93)
Q Consensus 13 ~~~~~C~VCg~~~~-~~hyGv~~C~~C 38 (93)
.....|.|||.+.. -..||...|.-|
T Consensus 15 r~~nrC~~cGr~rg~iRkfgl~lcR~c 41 (55)
T 2xzm_N 15 KDSKECRVCGARQGLITKYEMMTCRRC 41 (55)
T ss_dssp GGGCCCTTTCCSSTTCCCSSSCCCHHH
T ss_pred CCceEeecCCCCcchHHHhCCchhhHH
Confidence 34567999999754 457998888766
No 56
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=26.23 E-value=56 Score=16.84 Aligned_cols=22 Identities=27% Similarity=0.703 Sum_probs=14.9
Q ss_pred CCCCCceecCCCCceeeeCcccchhhhh
Q psy6599 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSG 40 (93)
Q Consensus 13 ~~~~~C~VCg~~~~~~hyGv~~C~~C~~ 40 (93)
.....|.+|+..+ ...|..|+.
T Consensus 13 ~~~~~C~~C~~~~------~~~Cs~C~~ 34 (60)
T 2dj8_A 13 DSSESCWNCGRKA------SETCSGCNT 34 (60)
T ss_dssp CCSCCCSSSCSCC------CEECTTTSC
T ss_pred CCCcccccCCCCC------cccCCCCCC
Confidence 4557899999853 346777764
No 57
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=25.82 E-value=28 Score=18.22 Aligned_cols=26 Identities=27% Similarity=0.657 Sum_probs=18.3
Q ss_pred CCCCCceecCCCCceeeeCcccchhhhhhhh
Q psy6599 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFK 43 (93)
Q Consensus 13 ~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFr 43 (93)
.....|.||++.. ..+.|.+|...|.
T Consensus 7 ~~~~~C~vC~~~g-----~ll~Cd~C~~~fH 32 (61)
T 1mm2_A 7 HHMEFCRVCKDGG-----ELLCCDTCPSSYH 32 (61)
T ss_dssp SSCSSCTTTCCCS-----SCBCCSSSCCCBC
T ss_pred CCCCcCCCCCCCC-----CEEEcCCCCHHHc
Confidence 3456799999743 4678999876554
No 58
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=24.80 E-value=29 Score=21.40 Aligned_cols=33 Identities=18% Similarity=0.583 Sum_probs=24.6
Q ss_pred CCCCceecCCCCc-------eee--eCcccchhhhhhhhhhh
Q psy6599 14 LDIPCKVCGDRSS-------GKH--YGIYSCDGCSGFFKRSI 46 (93)
Q Consensus 14 ~~~~C~VCg~~~~-------~~h--yGv~~C~~C~~FFrR~~ 46 (93)
..-.|..||...+ -.| |.+..|..|+.||....
T Consensus 7 ~~~~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~~ 48 (129)
T 3ql9_A 7 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDD 48 (129)
T ss_dssp CSCBCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHSC
T ss_pred CceEeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhccc
Confidence 3456999998763 234 88999999999986553
No 59
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=24.20 E-value=7.5 Score=21.24 Aligned_cols=28 Identities=21% Similarity=0.709 Sum_probs=19.3
Q ss_pred CCceecCCCCceeeeCcccchhhhhhhhhh
Q psy6599 16 IPCKVCGDRSSGKHYGIYSCDGCSGFFKRS 45 (93)
Q Consensus 16 ~~C~VCg~~~~~~hyGv~~C~~C~~FFrR~ 45 (93)
..|.||+.+..+. ..+.|..|...|.-.
T Consensus 19 ~~C~~C~~~~~~~--~mi~CD~C~~wfH~~ 46 (75)
T 2k16_A 19 WICPGCNKPDDGS--PMIGCDDCDDWYHWP 46 (75)
T ss_dssp ECBTTTTBCCSSC--CEEECSSSSSEEEHH
T ss_pred cCCCCCCCCCCCC--CEEEcCCCCcccccc
Confidence 4599999876432 256799998776543
No 60
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=23.78 E-value=9.7 Score=20.58 Aligned_cols=34 Identities=21% Similarity=0.621 Sum_probs=22.7
Q ss_pred CCCCceecCCCCceeeeCcccch-hhhhhhhhhhcc
Q psy6599 14 LDIPCKVCGDRSSGKHYGIYSCD-GCSGFFKRSIHR 48 (93)
Q Consensus 14 ~~~~C~VCg~~~~~~hyGv~~C~-~C~~FFrR~~~~ 48 (93)
...+|.+|+.+.+.-. ....|. .|..+|.+....
T Consensus 7 ~~~~C~~C~~p~~~~~-~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQ-DAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTS-CEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCC-CeEecccCccccCchhccC
Confidence 3467999998854322 246788 999988776543
No 61
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=22.62 E-value=33 Score=16.54 Aligned_cols=11 Identities=27% Similarity=0.760 Sum_probs=9.3
Q ss_pred cchHHHHhHHh
Q psy6599 75 RACRLNKCFMS 85 (93)
Q Consensus 75 ~~CR~~KCl~~ 85 (93)
.+|.|++||+.
T Consensus 6 ~a~a~q~CL~~ 16 (38)
T 1ei0_A 6 QAAEIQKCLQA 16 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46899999986
No 62
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.60 E-value=82 Score=16.92 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCCceecCCCCc
Q psy6599 4 GTDNSLGDRLLDIPCKVCGDRSS 26 (93)
Q Consensus 4 ~~~~~~~~~~~~~~C~VCg~~~~ 26 (93)
|+.+..........|..|+.+..
T Consensus 4 g~~~~~~~~~~~~~C~~C~~~I~ 26 (80)
T 2dj7_A 4 GSSGKPIKIRGPSHCAGCKEEIK 26 (80)
T ss_dssp CCCCCCCCCSSCSCCTTTCCCCS
T ss_pred CcCCCCcCCCCCCCCcCcCCeeC
Confidence 33333334445678999998653
No 63
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.57 E-value=42 Score=19.29 Aligned_cols=26 Identities=23% Similarity=0.576 Sum_probs=18.8
Q ss_pred CCCCCceecCCCCceeeeCcccchhhhhhhh
Q psy6599 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFK 43 (93)
Q Consensus 13 ~~~~~C~VCg~~~~~~hyGv~~C~~C~~FFr 43 (93)
.....|.||++.. ....|..|..-|.
T Consensus 23 ~n~~~C~vC~~~g-----~LL~CD~C~~~fH 48 (88)
T 1fp0_A 23 DSATICRVCQKPG-----DLVMCNQCEFCFH 48 (88)
T ss_dssp SSSSCCSSSCSSS-----CCEECTTSSCEEC
T ss_pred CCCCcCcCcCCCC-----CEEECCCCCCcee
Confidence 3456799999764 3678999976554
No 64
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.05 E-value=36 Score=18.55 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCCCCceecCCCCceeeeCcccchhhhhhh
Q psy6599 3 VGTDNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFF 42 (93)
Q Consensus 3 ~~~~~~~~~~~~~~~C~VCg~~~~~~hyGv~~C~~C~~FF 42 (93)
+++....++......|..|+....-. ...|. |..-|
T Consensus 3 ~~~~~~~~~k~~~~rC~~C~kkvgl~---~f~Cr-Cg~~F 38 (64)
T 1wfh_A 3 SGSSGQPSPPQRPNRCTVCRKRVGLT---GFMCR-CGTTF 38 (64)
T ss_dssp CCCSSCCCCCSSCCCCTTTCCCCCTT---CEECS-SSCEE
T ss_pred CCcCccCCCCCcCCcChhhCCccCcc---CEEee-cCCEe
Confidence 34444445566678899998764322 23453 65444
No 65
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=21.62 E-value=1e+02 Score=17.91 Aligned_cols=11 Identities=36% Similarity=0.924 Sum_probs=9.0
Q ss_pred CCCCceecCCC
Q psy6599 14 LDIPCKVCGDR 24 (93)
Q Consensus 14 ~~~~C~VCg~~ 24 (93)
....|+|||+.
T Consensus 15 ~~qiCqiCGD~ 25 (93)
T 1weo_A 15 DGQFCEICGDQ 25 (93)
T ss_dssp SSCBCSSSCCB
T ss_pred CCCccccccCc
Confidence 44789999986
No 66
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=20.85 E-value=19 Score=17.72 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=14.5
Q ss_pred CCCCceecCCCCceeeeCcccchhhh
Q psy6599 14 LDIPCKVCGDRSSGKHYGIYSCDGCS 39 (93)
Q Consensus 14 ~~~~C~VCg~~~~~~hyGv~~C~~C~ 39 (93)
.+..|.+|++.--|......-|..|+
T Consensus 10 ~pt~C~~C~~~l~g~~~qg~~C~~C~ 35 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQGLKCEDCG 35 (50)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTC
T ss_pred CCCCcCCCCceeeccCCccCEeCCCC
Confidence 34557777766555333344566665
No 67
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.71 E-value=67 Score=16.15 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=10.4
Q ss_pred CCCCCCCCCceecCCC
Q psy6599 9 LGDRLLDIPCKVCGDR 24 (93)
Q Consensus 9 ~~~~~~~~~C~VCg~~ 24 (93)
.........|.||.+.
T Consensus 9 ~~~~~~~~~C~IC~~~ 24 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDG 24 (69)
T ss_dssp CCCTTCCCCCTTTCCC
T ss_pred ccCCCCCCCCcccCcc
Confidence 3334455679999875
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.41 E-value=1.1e+02 Score=16.03 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCceecCCCCceee---eCcc-cchhhhh
Q psy6599 6 DNSLGDRLLDIPCKVCGDRSSGKH---YGIY-SCDGCSG 40 (93)
Q Consensus 6 ~~~~~~~~~~~~C~VCg~~~~~~h---yGv~-~C~~C~~ 40 (93)
+...........|.||-+.....- =|=. .|..|..
T Consensus 6 ~e~e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 6 SGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp CCCCCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHH
T ss_pred ccccccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHh
Confidence 333344445678999987643321 1222 6777764
No 69
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.36 E-value=15 Score=20.87 Aligned_cols=29 Identities=17% Similarity=0.647 Sum_probs=18.4
Q ss_pred CCCceecCCCCceeeeCcccchhhhhhhh
Q psy6599 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFK 43 (93)
Q Consensus 15 ~~~C~VCg~~~~~~hyGv~~C~~C~~FFr 43 (93)
...|.||+.....-.-..+.|.+|...|.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH 44 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYH 44 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEE
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEc
Confidence 35799999764322223567888875553
No 70
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=20.07 E-value=29 Score=18.42 Aligned_cols=25 Identities=36% Similarity=0.865 Sum_probs=18.2
Q ss_pred CCCCceecCCCCceeeeCcccchhhhhhhh
Q psy6599 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFK 43 (93)
Q Consensus 14 ~~~~C~VCg~~~~~~hyGv~~C~~C~~FFr 43 (93)
....|.||++.. ..+.|.+|...|.
T Consensus 7 ~~~~C~vC~~~g-----~ll~CD~C~~~fH 31 (66)
T 1xwh_A 7 NEDECAVCRDGG-----ELICCDGCPRAFH 31 (66)
T ss_dssp CCCSBSSSSCCS-----SCEECSSCCCEEC
T ss_pred CCCCCccCCCCC-----CEEEcCCCChhhc
Confidence 456799999753 3678888876554
Done!