RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6599
(93 letters)
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear
protein, receptor, transcription regulation, zinc,
EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Length = 89
Score = 116 bits (293), Expect = 3e-36
Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
I C VCGD+SSGKHYG ++C+GC FFKRS+ RN YTC+A + CPID+ HRNQC
Sbjct: 7 GIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN----CPIDQHHRNQC 62
Query: 75 RACRLNKCFMSAMNKD 90
+ CRL KC M ++
Sbjct: 63 QYCRLKKCLKVGMRRE 78
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 120 bits (303), Expect = 3e-34
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C
Sbjct: 137 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRC 192
Query: 75 RACRLNKCFMSAMNKD 90
+ CR KC M ++
Sbjct: 193 QYCRYQKCLAMGMKRE 208
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR,
nuclear receptor, protein-DNA complex, transcripti
complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Length = 99
Score = 111 bits (280), Expect = 4e-34
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN+C+ C
Sbjct: 6 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRNRCQYC 61
Query: 78 RLNKCFMSAMNKD 90
R KC M ++
Sbjct: 62 RYQKCLAMGMKRE 74
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor,
protein-DNA, transcription/DNA complex; HET: DNA; 1.70A
{Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Length = 86
Score = 111 bits (279), Expect = 5e-34
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 4/74 (5%)
Query: 17 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 76
PC VC D+SSG HYG+ +C+GC GFF+RSI +N VYTC + C I+K RN+C+
Sbjct: 6 PCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKN----CIINKVTRNRCQY 61
Query: 77 CRLNKCFMSAMNKD 90
CRL KCF M+K+
Sbjct: 62 CRLQKCFEVGMSKE 75
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding
domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Length = 78
Score = 110 bits (278), Expect = 5e-34
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C +CGDR++GKHYG SCDGC GFF+RS+ +N +Y+C+ C +DK RNQCR C
Sbjct: 3 CAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQ----CVVDKDKRNQCRYC 58
Query: 78 RLNKCFMSAMNKD 90
RL KCF + M K+
Sbjct: 59 RLKKCFRAGMKKE 71
>2han_A Protein ultraspiracle; transcription regulation, transcription
factor, DNA-binding, nuclear protein, nuclear receptor,
zinc finger; 1.95A {Drosophila melanogaster} SCOP:
g.39.1.2
Length = 93
Score = 110 bits (276), Expect = 1e-33
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
C +CGDR+SGKHYG+YSC+GC GFFKR++ ++ Y C+ + C IDK RN+C
Sbjct: 10 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRN----CIIDKRQRNRC 65
Query: 75 RACRLNKCFMSAMNKD 90
+ CR KC M ++
Sbjct: 66 QYCRYQKCLTCGMKRE 81
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear
receptor, protein-DNA, transcription/DNA complex; HET:
DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A*
1rxr_A 1r0n_A 1r0o_A 2nll_A*
Length = 85
Score = 109 bits (275), Expect = 2e-33
Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 13 LLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRN 72
C +CGDRSSGKHYG+YSC+GC GFFKR++ ++ YTC+ D C IDK RN
Sbjct: 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD----CLIDKRQRN 58
Query: 73 QCRACRLNKCFMSAMNKD 90
+C+ CR KC M ++
Sbjct: 59 RCQYCRYQKCLAMGMKRE 76
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding,
reverb, REV- ERB, transcription regulation,
transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo
sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Length = 94
Score = 109 bits (275), Expect = 2e-33
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQ 73
+ + CKVCGD +SG HYG+ +C+GC GFF+RSI +N Y + +C I + +RN+
Sbjct: 6 MVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLK---NENCSIVRINRNR 62
Query: 74 CRACRLNKCFMSAMNKD 90
C+ CR KC M++D
Sbjct: 63 CQQCRFKKCLSVGMSRD 79
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 115 bits (288), Expect = 2e-32
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 6 DNSLGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCP 65
+ L+ I C+VCGD++SG HYG+++C+GC GFF+R+I +Y +C
Sbjct: 41 HEEPSNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCD-----LNCR 95
Query: 66 IDKTHRNQCRACRLNKCFMSAMNKD 90
I K RN+C+ CR KC M+ +
Sbjct: 96 IHKKSRNKCQYCRFQKCLAVGMSHN 120
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with
drug, transcription/DNA complex; HET: DNA; 2.40A {Homo
sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Length = 84
Score = 106 bits (266), Expect = 4e-32
Identities = 36/76 (47%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQC 74
C VC D +SG HYG++SC+GC FFKRSI + Y C A C IDK R C
Sbjct: 4 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQ----CTIDKNRRKSC 59
Query: 75 RACRLNKCFMSAMNKD 90
+ACRL KC+ M K
Sbjct: 60 QACRLRKCYEVGMMKG 75
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger,
DNA- binding domain, transcription factor, FTZ-F1,
C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Length = 113
Score = 105 bits (263), Expect = 2e-31
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
GD L+ C VCGD+ SG HYG+ +C+ C GFFKR++ N+ YTC + C IDKT
Sbjct: 4 GDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQN----CQIDKT 59
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
R +C CR KC M +
Sbjct: 60 QRKRCPYCRFQKCLSVGMKLE 80
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate
response gene product, transcription factor, monomeric
protein-DNA complex; HET: DNA; 2.70A {Rattus
norvegicus} SCOP: g.39.1.2
Length = 89
Score = 104 bits (261), Expect = 3e-31
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRAC 77
C VCGD +S +HYG+ +C+GC GFFKR++ ++ Y C A D CP+DK RN+C+ C
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKD----CPVDKRRRNRCQFC 58
Query: 78 RLNKCFMSAMNKD 90
R KC M K+
Sbjct: 59 RFQKCLAVGMVKE 71
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery,
lever ARM, transcription, hormone; HET: DNA; 1.61A
{Rattus norvegicus} PDB: 3g6p_A* 3g6q_B* 3g6r_B*
3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A*
3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A*
1gdc_A 2gda_A 1rgd_A ...
Length = 90
Score = 102 bits (257), Expect = 1e-30
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 17 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 76
C VC D +SG HYG+ +C C FFKR++ Y C + D C IDK R C A
Sbjct: 4 MCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRND----CIIDKIRRKNCPA 59
Query: 77 CRLNKCFMSAMNKD 90
CR KC + MN +
Sbjct: 60 CRYRKCLQAGMNLE 73
>2han_B Ecdysone receptor; transcription regulation, transcription
factor, DNA-binding, nuclear protein, nuclear receptor,
zinc finger; 1.95A {Drosophila melanogaster} SCOP:
g.39.1.2 PDB: 1r0o_B 1r0n_B
Length = 119
Score = 103 bits (258), Expect = 2e-30
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKT 69
R+ + C VCGDR+SG HY +C+GC GFF+RS+ ++ VY CK C +D
Sbjct: 3 APRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRA----CEMDMY 58
Query: 70 HRNQCRACRLNKCFMSAMNKD 90
R +C+ CRL KC M +
Sbjct: 59 MRRKCQECRLKKCLAVGMRPE 79
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA
binding domain, HERR2, hormone nuclear receptor; NMR
{Homo sapiens} SCOP: g.39.1.2
Length = 98
Score = 102 bits (256), Expect = 2e-30
Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 17 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 76
C VCGD +SG HYG+ SC+ C FFKR+I N Y+C A + C I K R C+A
Sbjct: 6 LCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNE----CEITKRRRKSCQA 61
Query: 77 CRLNKCFMSAMNKD 90
CR K M K+
Sbjct: 62 CRFMKALKVGMLKE 75
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex,
transcription/DNA complex; 3.10A {Rattus norvegicus}
SCOP: g.39.1.2
Length = 105
Score = 99.9 bits (249), Expect = 2e-29
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 17 PCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHRNQCRA 76
C +CGD +SG HYG +C C FFKR+ + Y C ++ D C IDK R C +
Sbjct: 9 TCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRND----CTIDKFRRKNCPS 64
Query: 77 CRLNKCFMSAMNKD 90
CRL KC+ + M
Sbjct: 65 CRLRKCYEAGMTLG 78
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex,
transcription/DNA complex; 2.70A {Homo sapiens} SCOP:
g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Length = 110
Score = 99.9 bits (249), Expect = 3e-29
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 11 DRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTH 70
DR + C VCGDR++G H+ +C+GC GFF+RS+ R ++TC GD C I K +
Sbjct: 2 DRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGD----CRITKDN 57
Query: 71 RNQCRACRLNKCFMSAMNKD 90
R C+ACRL +C M K+
Sbjct: 58 RRHCQACRLKRCVDIGMMKE 77
>2nll_B Protein (thyroid hormone receptor); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, zinc-
finger, multigene family; HET: DNA 5IU; 1.90A {Homo
sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Length = 103
Score = 96.0 bits (239), Expect = 8e-28
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRN--RVYTCKAQGDLKGHCPIDKTHRN 72
D C VCGD+++G HY +C+GC GFF+R+I +N Y+CK +G C IDK RN
Sbjct: 1 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGK----CVIDKVTRN 56
Query: 73 QCRACRLNKCFMSAMNKD 90
QC+ CR KC M D
Sbjct: 57 QCQECRFKKCIYVGMATD 74
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear
receptor, structural proteomic europe, spine,
structural genomics; 2.70A {Homo sapiens} SCOP:
a.123.1.1 PDB: 1z5x_U* 2q60_A
Length = 282
Score = 34.0 bits (78), Expect = 0.003
Identities = 1/15 (6%), Positives = 5/15 (33%)
Query: 70 HRNQCRACRLNKCFM 84
H + + + +
Sbjct: 6 HHHHHSSGLVPRGSH 20
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.43
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 8/25 (32%)
Query: 43 KRSIHRNRVYTCKAQGDLKGHCPID 67
K+++ K Q LK + D
Sbjct: 19 KQALK-------KLQASLKLYAD-D 35
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear
receptor, ECR, USP, hormone/growth factor receptor
complex; HET: P1A; 3.07A {Bemisia tabaci}
Length = 310
Score = 26.7 bits (59), Expect = 1.1
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 63 HCPIDKTHRNQCRACRLNKCFMSAMNK 89
DK N +C + +
Sbjct: 31 KAQKDKDKPNSTTSCSPDGIKQEIDPQ 57
Score = 25.5 bits (56), Expect = 2.6
Identities = 3/27 (11%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 64 CPIDKTHRNQCRACRLNKCFMSAMNKD 90
C + K + + + ++ + D
Sbjct: 23 CAV-KRKEKKAQKDKDKPNSTTSCSPD 48
Score = 24.8 bits (54), Expect = 4.9
Identities = 6/26 (23%), Positives = 6/26 (23%), Gaps = 7/26 (26%)
Query: 64 CPIDKTHR-------NQCRACRLNKC 82
HR QC R K
Sbjct: 6 SHHHHHHRPECVVPEFQCAVKRKEKK 31
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 25.8 bits (56), Expect = 2.1
Identities = 4/38 (10%), Positives = 10/38 (26%)
Query: 26 SGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGH 63
+H G++ + + L+ H
Sbjct: 342 EQQHMGLFKANDSYALLHAPLSMQVEQLVSGAAALEHH 379
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET:
VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A*
3o1d_A* 3o1e_A*
Length = 302
Score = 25.6 bits (56), Expect = 3.1
Identities = 1/20 (5%), Positives = 2/20 (10%)
Query: 70 HRNQCRACRLNKCFMSAMNK 89
+ R
Sbjct: 25 DDSYSDFVRFRPPVREGPVT 44
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 25.4 bits (55), Expect = 3.8
Identities = 10/54 (18%), Positives = 15/54 (27%)
Query: 18 CKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGHCPIDKTHR 71
C C D G + C CS + H ++C H+
Sbjct: 51 CSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHK 104
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 25.1 bits (54), Expect = 3.8
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 5/20 (25%)
Query: 30 YGIYSCDGCSGFFKRSIHRN 49
G++ C CSG IHRN
Sbjct: 52 LGVFICLSCSG-----IHRN 66
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 24.3 bits (52), Expect = 4.9
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 14 LDIPCKVCGDRSSGKHYGIYSCDGC 38
+ + C VC + + C C
Sbjct: 15 MGLACVVCRQMTVASGNQLVECQEC 39
>4akr_B F-actin-capping protein subunit beta; actin-binding protein;
2.20A {Dictyostelium discoideum}
Length = 290
Score = 24.6 bits (53), Expect = 5.9
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 8 SLGDRLL---DIPCKVCGDRSSGKHY--GIYSCDGCS 39
L + LL D P KV D S K Y Y+ D S
Sbjct: 52 DLTEDLLSSIDQPLKVAYDAVSKKDYLLCDYNRDADS 88
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin
regulator, metal-binding, finger, signaling protein;
NMR {Homo sapiens}
Length = 71
Score = 23.7 bits (51), Expect = 6.1
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGC 38
D C +C D S I CD C
Sbjct: 16 DAVCSICMDGESQNSNVILFCDMC 39
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 23.3 bits (50), Expect = 8.5
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 10 GDRLLDIPCKVCGDRSSGKHYGIYSCDGC 38
G C +C + S + CD C
Sbjct: 1 GSSGSSGVCTICQEEYSEAPNEMVICDKC 29
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 23.4 bits (50), Expect = 8.6
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 15 DIPCKVCGDRSSGKHYGIYSCDGC 38
D C +C D S I CD C
Sbjct: 25 DAVCSICMDGESQNSNVILFCDMC 48
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation
factors PAIP1 and PAIP2, translation-RNA complex; 2.00A
{Homo sapiens} PDB: 1cvj_A*
Length = 213
Score = 24.2 bits (53), Expect = 8.7
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 18 CKVCGDRSSGKHYG 31
+VC D + + G
Sbjct: 45 IRVCRDMITRRSLG 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.474
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,398,955
Number of extensions: 69576
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 77
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)