Query psy66
Match_columns 164
No_of_seqs 116 out of 1338
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 22:13:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy66.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/66hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 99.9 1.2E-22 2.6E-27 161.6 14.4 138 3-140 135-282 (485)
2 KOG0254|consensus 99.8 3.9E-18 8.4E-23 138.3 15.6 141 3-143 161-310 (513)
3 PF00083 Sugar_tr: Sugar (and 99.7 3E-21 6.6E-26 153.4 -10.7 138 2-140 120-265 (451)
4 TIGR00887 2A0109 phosphate:H+ 99.7 8.5E-17 1.8E-21 130.0 12.0 89 3-91 134-250 (502)
5 TIGR01299 synapt_SV2 synaptic 99.7 7.7E-16 1.7E-20 129.1 16.2 91 3-93 274-381 (742)
6 KOG0255|consensus 99.7 1.3E-15 2.8E-20 123.6 15.0 136 3-138 190-332 (521)
7 TIGR00898 2A0119 cation transp 99.7 2.9E-15 6.3E-20 120.9 14.0 135 3-137 199-336 (505)
8 KOG0253|consensus 99.5 9.8E-14 2.1E-18 106.6 11.2 131 6-137 187-336 (528)
9 PRK10077 xylE D-xylose transpo 99.4 2E-11 4.4E-16 97.8 15.6 90 3-92 139-240 (479)
10 TIGR00879 SP MFS transporter, 99.3 2.6E-10 5.5E-15 90.4 14.3 91 3-93 146-243 (481)
11 PRK10642 proline/glycine betai 99.2 2.9E-11 6.4E-16 97.7 6.8 99 5-106 363-471 (490)
12 PRK10642 proline/glycine betai 99.1 1.1E-09 2.4E-14 88.6 11.3 73 3-75 137-221 (490)
13 TIGR00895 2A0115 benzoate tran 98.8 2.4E-08 5.2E-13 77.5 8.4 87 3-90 124-215 (398)
14 PRK09952 shikimate transporter 98.8 1.2E-08 2.6E-13 81.4 6.5 75 4-78 145-231 (438)
15 KOG0252|consensus 98.8 7.2E-09 1.6E-13 82.0 4.5 81 3-83 163-263 (538)
16 PRK10406 alpha-ketoglutarate t 98.7 2.7E-07 5.8E-12 73.5 11.9 70 3-72 143-224 (432)
17 TIGR00891 2A0112 putative sial 98.7 1.8E-07 3.9E-12 72.9 10.2 75 3-77 119-199 (405)
18 TIGR00903 2A0129 major facilit 98.7 1.9E-07 4.2E-12 73.1 9.1 68 6-73 100-172 (368)
19 PRK12307 putative sialic acid 98.5 1.3E-06 2.8E-11 69.1 10.5 71 3-73 125-199 (426)
20 TIGR00893 2A0114 d-galactonate 98.5 1.3E-06 2.9E-11 67.3 10.2 69 3-71 101-174 (399)
21 TIGR02332 HpaX 4-hydroxyphenyl 98.5 4.6E-07 1E-11 71.8 6.6 68 4-71 116-194 (412)
22 TIGR00894 2A0114euk Na(+)-depe 98.4 2.1E-06 4.5E-11 68.9 10.0 69 3-71 150-224 (465)
23 KOG2533|consensus 98.4 2.4E-07 5.3E-12 75.1 3.6 69 3-71 153-232 (495)
24 TIGR00883 2A0106 metabolite-pr 98.3 2.1E-06 4.6E-11 66.4 7.2 73 3-75 115-199 (394)
25 PRK11551 putative 3-hydroxyphe 98.3 7.2E-06 1.6E-10 64.4 9.6 73 4-76 123-200 (406)
26 PRK11663 regulatory protein Uh 98.2 2.4E-05 5.2E-10 62.4 11.2 70 3-72 130-204 (434)
27 PRK03893 putative sialic acid 98.2 1.2E-05 2.5E-10 65.0 9.0 72 4-75 128-203 (496)
28 KOG2532|consensus 98.2 2.3E-05 5.1E-10 63.3 10.5 110 3-131 147-265 (466)
29 PRK15075 citrate-proton sympor 98.1 1E-05 2.2E-10 64.5 7.8 71 4-74 137-219 (434)
30 TIGR00901 2A0125 AmpG-related 98.1 1.9E-05 4.2E-10 61.0 8.7 65 5-69 104-181 (356)
31 PRK11010 ampG muropeptide tran 98.1 2.2E-05 4.7E-10 63.8 9.3 68 4-71 127-199 (491)
32 TIGR00881 2A0104 phosphoglycer 98.1 4.3E-06 9.3E-11 64.4 4.5 69 3-71 102-176 (379)
33 PRK11902 ampG muropeptide tran 98.1 2.6E-05 5.6E-10 61.5 8.8 69 4-72 114-187 (402)
34 TIGR00900 2A0121 H+ Antiporter 98.1 7.7E-05 1.7E-09 57.1 11.2 61 4-64 112-176 (365)
35 TIGR00805 oat sodium-independe 98.0 4.5E-05 9.8E-10 64.0 9.6 68 2-69 190-283 (633)
36 PF07690 MFS_1: Major Facilita 98.0 3.3E-05 7.1E-10 59.0 7.2 69 3-71 104-177 (352)
37 COG2271 UhpC Sugar phosphate p 97.9 1.5E-05 3.2E-10 63.0 4.7 68 4-71 137-211 (448)
38 PRK11195 lysophospholipid tran 97.9 0.00028 6.1E-09 55.7 11.8 69 3-71 107-178 (393)
39 PTZ00207 hypothetical protein; 97.9 6E-05 1.3E-09 62.6 8.1 87 4-91 140-232 (591)
40 PRK11273 glpT sn-glycerol-3-ph 97.9 0.00038 8.2E-09 55.9 12.4 68 5-72 141-214 (452)
41 TIGR00711 efflux_EmrB drug res 97.9 0.00036 7.8E-09 56.0 12.2 69 3-71 109-182 (485)
42 PRK15403 multidrug efflux syst 97.9 0.00014 2.9E-09 57.9 9.5 67 5-71 125-196 (413)
43 COG2814 AraJ Arabinose efflux 97.9 0.00013 2.8E-09 57.6 9.1 65 3-67 120-189 (394)
44 PRK03545 putative arabinose tr 97.8 5.9E-05 1.3E-09 59.1 7.1 68 4-71 117-189 (390)
45 PRK10213 nepI ribonucleoside t 97.8 7.5E-05 1.6E-09 58.9 7.6 69 3-71 127-200 (394)
46 TIGR00710 efflux_Bcr_CflA drug 97.8 0.00018 4E-09 55.7 9.4 68 4-71 113-185 (385)
47 TIGR00880 2_A_01_02 Multidrug 97.8 0.00017 3.6E-09 47.4 7.1 66 4-69 71-141 (141)
48 TIGR00712 glpT glycerol-3-phos 97.7 0.00015 3.3E-09 57.9 7.6 68 5-72 139-212 (438)
49 TIGR00886 2A0108 nitrite extru 97.7 0.0004 8.6E-09 53.6 9.0 68 4-71 110-193 (366)
50 PRK11102 bicyclomycin/multidru 97.7 0.0005 1.1E-08 53.4 9.5 68 4-71 99-171 (377)
51 KOG2615|consensus 97.7 0.00018 3.8E-09 56.5 6.7 67 4-70 140-217 (451)
52 PRK10091 MFS transport protein 97.6 0.00028 6.1E-09 55.3 8.0 66 5-70 112-182 (382)
53 PRK10489 enterobactin exporter 97.6 0.00036 7.8E-09 55.2 8.5 68 5-72 131-202 (417)
54 PRK15402 multidrug efflux syst 97.6 0.00054 1.2E-08 54.0 9.0 69 4-72 121-194 (406)
55 PRK12382 putative transporter; 97.6 0.00036 7.8E-09 54.7 7.5 66 5-70 133-202 (392)
56 TIGR01299 synapt_SV2 synaptic 97.6 0.00035 7.5E-09 59.6 7.8 67 4-70 668-737 (742)
57 TIGR00899 2A0120 sugar efflux 97.5 0.00023 5E-09 55.0 6.2 68 6-73 109-183 (375)
58 PRK10473 multidrug efflux syst 97.5 0.00061 1.3E-08 53.4 8.5 68 4-71 111-183 (392)
59 PRK05122 major facilitator sup 97.5 0.00059 1.3E-08 53.5 7.6 67 4-70 132-202 (399)
60 PRK14995 methyl viologen resis 97.4 0.00073 1.6E-08 54.9 8.0 64 8-71 118-187 (495)
61 PRK08633 2-acyl-glycerophospho 97.4 0.0013 2.7E-08 58.5 9.7 70 3-72 122-205 (1146)
62 PLN00028 nitrate transmembrane 97.4 0.0019 4.1E-08 52.3 9.8 63 6-68 145-220 (476)
63 PRK11646 multidrug resistance 97.4 0.0018 4E-08 51.2 9.5 65 5-69 120-188 (400)
64 PRK11043 putative transporter; 97.4 0.0017 3.7E-08 51.0 9.2 65 6-70 116-184 (401)
65 PRK09874 drug efflux system pr 97.3 0.0014 3E-08 51.4 8.3 66 5-70 127-197 (408)
66 cd06174 MFS The Major Facilita 97.3 0.00087 1.9E-08 50.8 6.5 65 3-67 106-174 (352)
67 TIGR00806 rfc RFC reduced fola 97.3 0.0016 3.5E-08 52.8 8.1 71 4-74 134-210 (511)
68 KOG1330|consensus 97.2 2.7E-05 5.9E-10 62.1 -2.9 70 2-71 139-214 (493)
69 TIGR00890 2A0111 Oxalate/Forma 97.2 0.0029 6.2E-08 48.6 8.3 64 6-70 113-181 (377)
70 PRK11652 emrD multidrug resist 97.2 0.0028 6.1E-08 49.7 8.2 66 6-71 118-188 (394)
71 PRK10077 xylE D-xylose transpo 97.1 0.0035 7.5E-08 50.3 8.9 82 3-89 383-475 (479)
72 PF06609 TRI12: Fungal trichot 97.1 0.0011 2.4E-08 55.1 6.1 57 6-62 152-212 (599)
73 PRK06814 acylglycerophosphoeth 97.1 0.0015 3.2E-08 58.2 6.8 68 3-70 127-198 (1140)
74 TIGR02718 sider_RhtX_FptX side 97.0 0.0094 2E-07 46.7 10.2 62 7-68 120-185 (390)
75 PRK03699 putative transporter; 97.0 0.0037 7.9E-08 49.2 7.9 60 4-63 115-179 (394)
76 TIGR00885 fucP L-fucose:H+ sym 97.0 0.01 2.2E-07 47.2 10.3 60 3-62 113-202 (410)
77 PRK09556 uhpT sugar phosphate 97.0 0.00041 9E-09 55.9 2.4 69 3-71 141-217 (467)
78 TIGR00889 2A0110 nucleoside tr 97.0 0.002 4.4E-08 51.3 6.3 67 4-70 328-406 (418)
79 PRK10504 putative transporter; 96.9 0.0037 8E-08 50.2 7.2 67 4-70 118-189 (471)
80 PRK15011 sugar efflux transpor 96.9 0.0034 7.4E-08 49.4 6.7 65 6-70 127-198 (393)
81 PRK10054 putative transporter; 96.9 0.0031 6.7E-08 49.8 6.4 66 4-69 116-185 (395)
82 PRK15011 sugar efflux transpor 96.9 0.0043 9.4E-08 48.8 7.1 63 5-68 326-392 (393)
83 TIGR00898 2A0119 cation transp 96.9 0.004 8.7E-08 50.5 6.8 67 4-70 430-498 (505)
84 TIGR00792 gph sugar (Glycoside 96.8 0.013 2.7E-07 46.5 9.1 64 7-70 122-198 (437)
85 PRK10207 dipeptide/tripeptide 96.8 0.0053 1.2E-07 50.1 7.0 52 3-54 124-181 (489)
86 cd06174 MFS The Major Facilita 96.7 0.0063 1.4E-07 46.1 6.6 63 3-65 284-350 (352)
87 PRK05122 major facilitator sup 96.7 0.0084 1.8E-07 47.0 7.4 62 7-68 325-390 (399)
88 TIGR00879 SP MFS transporter, 96.7 0.0039 8.5E-08 49.3 5.4 67 4-70 403-474 (481)
89 TIGR00896 CynX cyanate transpo 96.6 0.034 7.4E-07 42.9 9.9 52 4-56 107-164 (355)
90 TIGR01272 gluP glucose/galacto 96.5 0.011 2.5E-07 45.2 7.0 68 2-69 28-117 (310)
91 TIGR00887 2A0109 phosphate:H+ 96.5 0.0091 2E-07 48.6 6.4 67 4-70 412-492 (502)
92 COG2223 NarK Nitrate/nitrite t 96.5 0.053 1.1E-06 43.2 10.3 67 3-70 123-197 (417)
93 TIGR00893 2A0114 d-galactonate 96.4 0.013 2.8E-07 45.0 6.5 61 3-63 330-395 (399)
94 TIGR00902 2A0127 phenyl propri 96.3 0.025 5.4E-07 44.3 8.0 47 7-55 117-167 (382)
95 TIGR00892 2A0113 monocarboxyla 96.3 0.011 2.5E-07 47.5 5.9 57 6-63 130-190 (455)
96 PRK11273 glpT sn-glycerol-3-ph 96.2 0.028 6.1E-07 45.1 8.0 57 7-63 370-431 (452)
97 TIGR00890 2A0111 Oxalate/Forma 96.2 0.012 2.6E-07 45.1 5.6 56 4-59 315-374 (377)
98 PRK11551 putative 3-hydroxyphe 96.2 0.015 3.3E-07 45.7 6.1 64 5-68 329-397 (406)
99 PRK12382 putative transporter; 96.1 0.026 5.6E-07 44.2 7.2 59 5-63 323-385 (392)
100 TIGR00892 2A0113 monocarboxyla 96.1 0.0038 8.2E-08 50.3 2.3 57 4-60 353-414 (455)
101 PRK09528 lacY galactoside perm 96.0 0.0095 2.1E-07 47.2 4.0 62 6-67 337-404 (420)
102 KOG3626|consensus 95.9 0.13 2.7E-06 44.0 10.5 69 2-70 255-346 (735)
103 PRK11128 putative 3-phenylprop 95.9 0.019 4.1E-07 45.0 5.4 60 8-69 118-181 (382)
104 TIGR01301 GPH_sucrose GPH fami 95.9 0.04 8.7E-07 44.9 7.3 67 5-71 135-223 (477)
105 PF13347 MFS_2: MFS/sugar tran 95.9 0.063 1.4E-06 42.7 8.4 63 6-68 125-200 (428)
106 TIGR00897 2A0118 polyol permea 95.8 0.092 2E-06 41.4 8.9 38 6-43 127-165 (402)
107 PRK09952 shikimate transporter 95.7 0.047 1E-06 43.7 7.1 66 4-69 363-435 (438)
108 PRK03633 putative MFS family t 95.7 0.053 1.1E-06 42.4 7.2 61 4-64 305-369 (381)
109 TIGR00899 2A0120 sugar efflux 95.7 0.046 1E-06 42.2 6.8 63 5-68 309-375 (375)
110 PRK10489 enterobactin exporter 95.7 0.042 9.2E-07 43.4 6.6 65 6-70 334-403 (417)
111 PRK09705 cynX putative cyanate 95.7 0.055 1.2E-06 42.6 7.1 57 3-60 116-177 (393)
112 TIGR00924 yjdL_sub1_fam amino 95.6 0.039 8.4E-07 44.8 6.3 57 3-59 121-184 (475)
113 PRK09584 tppB putative tripept 95.6 0.063 1.4E-06 44.0 7.4 56 3-58 131-192 (500)
114 PF03137 OATP: Organic Anion T 95.5 0.0036 7.9E-08 51.7 0.0 42 2-43 159-200 (539)
115 KOG0569|consensus 95.5 0.17 3.6E-06 41.5 9.3 68 2-69 386-457 (485)
116 TIGR00788 fbt folate/biopterin 95.4 0.072 1.6E-06 43.2 7.1 65 4-68 371-447 (468)
117 PRK03893 putative sialic acid 95.3 0.01 2.2E-07 47.9 2.0 50 4-53 386-439 (496)
118 TIGR00924 yjdL_sub1_fam amino 95.3 0.077 1.7E-06 43.1 6.9 58 3-60 400-461 (475)
119 PRK15462 dipeptide/tripeptide 95.3 0.06 1.3E-06 44.1 6.2 53 4-56 120-178 (493)
120 PRK10133 L-fucose transporter; 95.2 0.14 2.9E-06 41.2 8.1 38 3-40 136-173 (438)
121 PRK15034 nitrate/nitrite trans 95.2 0.51 1.1E-05 38.5 11.3 33 4-36 147-179 (462)
122 PRK11663 regulatory protein Uh 95.0 0.076 1.6E-06 42.4 6.2 57 7-63 360-420 (434)
123 PF03209 PUCC: PUCC protein; 95.0 0.17 3.8E-06 40.2 7.9 51 5-55 110-165 (403)
124 PRK09874 drug efflux system pr 94.9 0.036 7.8E-07 43.4 3.9 58 6-63 333-394 (408)
125 PRK03633 putative MFS family t 94.9 0.65 1.4E-05 36.3 11.0 37 7-43 117-153 (381)
126 TIGR00882 2A0105 oligosacchari 94.7 0.21 4.5E-06 39.3 7.9 48 23-70 136-187 (396)
127 COG0738 FucP Fucose permease [ 94.5 0.61 1.3E-05 37.3 9.8 42 2-43 122-163 (422)
128 PRK12307 putative sialic acid 94.5 0.15 3.3E-06 40.2 6.6 40 4-43 341-380 (426)
129 PF03825 Nuc_H_symport: Nucleo 94.5 0.19 4.2E-06 40.0 7.1 60 3-62 320-390 (400)
130 TIGR00788 fbt folate/biopterin 94.4 0.046 9.9E-07 44.4 3.6 66 4-70 140-212 (468)
131 PRK11010 ampG muropeptide tran 94.2 0.16 3.4E-06 41.5 6.3 65 5-69 337-405 (491)
132 PRK09556 uhpT sugar phosphate 94.1 0.31 6.7E-06 39.3 7.7 56 7-62 372-444 (467)
133 PRK11646 multidrug resistance 94.1 0.14 2.9E-06 40.6 5.5 40 4-43 317-356 (400)
134 PRK09528 lacY galactoside perm 93.6 0.43 9.3E-06 37.8 7.6 51 16-66 137-190 (420)
135 TIGR00897 2A0118 polyol permea 93.6 0.42 9.2E-06 37.7 7.5 58 8-66 339-400 (402)
136 PRK10406 alpha-ketoglutarate t 93.4 0.21 4.5E-06 39.8 5.5 62 5-67 357-424 (432)
137 PRK09584 tppB putative tripept 93.3 0.33 7.2E-06 39.8 6.7 39 3-41 401-439 (500)
138 PRK11462 putative transporter; 93.3 1.1 2.4E-05 36.3 9.5 62 7-68 132-206 (460)
139 PF01770 Folate_carrier: Reduc 93.2 0.38 8.2E-06 38.6 6.6 70 5-74 114-189 (412)
140 PRK09669 putative symporter Ya 93.2 0.83 1.8E-05 36.6 8.7 62 7-68 132-206 (444)
141 TIGR00891 2A0112 putative sial 93.1 0.15 3.2E-06 39.6 4.2 48 4-51 348-400 (405)
142 PRK03545 putative arabinose tr 93.1 0.55 1.2E-05 36.8 7.4 57 6-63 316-376 (390)
143 TIGR00712 glpT glycerol-3-phos 92.9 0.13 2.7E-06 41.2 3.6 63 8-70 369-437 (438)
144 TIGR00903 2A0129 major facilit 92.7 0.31 6.6E-06 38.3 5.5 60 5-64 301-362 (368)
145 KOG2816|consensus 92.5 0.59 1.3E-05 38.1 6.9 68 3-70 131-203 (463)
146 TIGR02718 sider_RhtX_FptX side 92.3 0.58 1.3E-05 36.6 6.6 54 8-61 327-385 (390)
147 PF00083 Sugar_tr: Sugar (and 92.3 0.012 2.6E-07 46.9 -3.0 67 4-70 369-440 (451)
148 KOG3764|consensus 92.2 0.091 2E-06 41.9 1.9 63 4-66 179-246 (464)
149 PF05977 MFS_3: Transmembrane 91.9 0.84 1.8E-05 37.8 7.3 52 5-56 328-383 (524)
150 COG2211 MelB Na+/melibiose sym 91.7 1.8 3.8E-05 35.4 8.7 57 8-64 136-204 (467)
151 TIGR00883 2A0106 metabolite-pr 91.6 0.15 3.3E-06 39.2 2.5 52 4-55 332-389 (394)
152 PRK09705 cynX putative cyanate 91.2 1.2 2.5E-05 35.2 7.2 63 8-70 316-385 (393)
153 PRK10504 putative transporter; 91.2 0.75 1.6E-05 37.0 6.2 39 5-43 374-412 (471)
154 KOG0255|consensus 91.1 1.1 2.4E-05 36.6 7.3 67 5-71 427-497 (521)
155 KOG0252|consensus 90.8 0.26 5.7E-06 40.1 3.2 68 4-71 426-502 (538)
156 PF03092 BT1: BT1 family; Int 90.5 1.1 2.3E-05 36.2 6.5 65 7-71 341-417 (433)
157 PRK11902 ampG muropeptide tran 89.8 1 2.2E-05 35.5 5.8 55 6-64 329-387 (402)
158 PRK10429 melibiose:sodium symp 89.7 4 8.8E-05 33.0 9.3 63 7-69 129-204 (473)
159 PF07672 MFS_Mycoplasma: Mycop 89.2 0.62 1.3E-05 35.0 3.8 49 16-64 2-59 (267)
160 PRK08633 2-acyl-glycerophospho 89.1 1.2 2.7E-05 39.9 6.4 67 4-70 342-414 (1146)
161 TIGR00792 gph sugar (Glycoside 88.9 3.2 6.9E-05 32.8 8.1 38 6-43 333-377 (437)
162 PF11700 ATG22: Vacuole efflux 87.6 8.1 0.00017 31.7 9.7 66 6-71 148-252 (477)
163 PRK10054 putative transporter; 86.4 2.4 5.2E-05 33.5 5.9 65 5-70 319-388 (395)
164 TIGR00902 2A0127 phenyl propri 86.4 4.3 9.4E-05 31.7 7.4 54 4-59 313-371 (382)
165 PF05977 MFS_3: Transmembrane 86.4 3.8 8.3E-05 34.0 7.2 57 4-60 123-183 (524)
166 TIGR02332 HpaX 4-hydroxyphenyl 86.3 0.77 1.7E-05 36.5 3.1 49 7-55 356-409 (412)
167 KOG0254|consensus 86.3 5.3 0.00012 32.8 8.1 67 3-69 414-486 (513)
168 KOG3810|consensus 86.1 3.4 7.4E-05 32.8 6.3 72 5-76 115-192 (433)
169 PRK06814 acylglycerophosphoeth 85.8 1.9 4.1E-05 38.9 5.6 50 5-54 355-409 (1140)
170 PF11700 ATG22: Vacuole efflux 85.2 4.3 9.3E-05 33.3 6.9 65 4-68 400-469 (477)
171 COG2814 AraJ Arabinose efflux 85.0 4.5 9.8E-05 32.4 6.7 59 5-63 318-382 (394)
172 KOG2504|consensus 84.0 1.4 3E-05 36.5 3.6 50 12-61 162-215 (509)
173 COG3202 ATP/ADP translocase [E 83.7 22 0.00047 29.5 10.1 36 8-43 172-207 (509)
174 PF06813 Nodulin-like: Nodulin 82.7 3.8 8.3E-05 30.6 5.2 59 9-68 121-183 (250)
175 TIGR00894 2A0114euk Na(+)-depe 82.4 2.7 5.8E-05 33.8 4.7 56 10-66 387-449 (465)
176 KOG0253|consensus 81.9 1.5 3.3E-05 35.2 2.9 42 2-43 452-493 (528)
177 PLN00028 nitrate transmembrane 81.0 1.8 3.8E-05 35.2 3.2 59 8-67 372-433 (476)
178 PRK03699 putative transporter; 80.9 3.6 7.7E-05 32.3 4.8 59 7-66 317-379 (394)
179 PRK15402 multidrug efflux syst 80.8 5.3 0.00011 31.4 5.8 49 11-59 335-387 (406)
180 PRK10207 dipeptide/tripeptide 80.6 8.6 0.00019 31.5 7.1 38 3-40 398-435 (489)
181 PF03092 BT1: BT1 family; Int 79.1 3.7 7.9E-05 33.1 4.4 63 6-68 108-177 (433)
182 TIGR00882 2A0105 oligosacchari 77.9 4.3 9.4E-05 31.8 4.4 53 8-60 331-388 (396)
183 COG0477 ProP Permeases of the 77.6 13 0.00027 26.7 6.6 54 4-57 114-175 (338)
184 KOG2532|consensus 77.5 3.4 7.4E-05 33.8 3.8 59 14-72 387-454 (466)
185 PRK15075 citrate-proton sympor 77.3 6.5 0.00014 31.3 5.4 39 5-43 352-391 (434)
186 PRK09669 putative symporter Ya 77.2 10 0.00022 30.4 6.4 38 6-43 341-385 (444)
187 TIGR01301 GPH_sucrose GPH fami 76.7 7.2 0.00016 32.0 5.5 65 6-70 402-475 (477)
188 PRK10213 nepI ribonucleoside t 76.4 13 0.00027 29.4 6.7 51 5-56 326-380 (394)
189 PRK15462 dipeptide/tripeptide 76.0 13 0.00027 30.8 6.7 40 2-41 395-435 (493)
190 KOG0055|consensus 75.6 69 0.0015 29.8 13.7 49 15-63 776-826 (1228)
191 PRK09848 glucuronide transport 75.4 16 0.00035 29.2 7.1 38 6-43 341-385 (448)
192 PF11990 DUF3487: Protein of u 74.7 22 0.00047 23.5 6.5 34 14-47 15-52 (121)
193 KOG2563|consensus 74.1 21 0.00046 29.3 7.3 33 11-43 167-199 (480)
194 PRK10697 DNA-binding transcrip 74.0 22 0.00048 23.4 7.0 13 60-72 57-69 (118)
195 PF00854 PTR2: POT family; In 73.6 15 0.00033 28.6 6.5 59 5-63 54-119 (372)
196 PF13428 TPR_14: Tetratricopep 73.0 9.2 0.0002 19.8 3.6 24 71-94 9-32 (44)
197 PRK11195 lysophospholipid tran 72.0 18 0.00039 28.5 6.6 59 5-63 314-378 (393)
198 PRK11128 putative 3-phenylprop 70.7 26 0.00057 27.3 7.2 55 6-62 315-374 (382)
199 KOG2325|consensus 68.2 69 0.0015 26.6 9.3 39 5-43 150-188 (488)
200 TIGR03750 conj_TIGR03750 conju 66.4 31 0.00066 22.5 5.5 28 14-41 12-39 (111)
201 TIGR00769 AAA ADP/ATP carrier 65.9 75 0.0016 26.2 10.0 38 6-43 151-188 (472)
202 PRK10429 melibiose:sodium symp 65.9 28 0.00061 28.2 6.6 39 5-43 345-390 (473)
203 PF11460 DUF3007: Protein of u 65.6 33 0.00072 22.0 5.8 15 29-43 9-23 (104)
204 PRK10091 MFS transport protein 64.6 31 0.00066 26.9 6.5 50 10-61 316-370 (382)
205 PRK11652 emrD multidrug resist 64.4 36 0.00078 26.5 6.9 38 5-43 320-357 (394)
206 TIGR00889 2A0110 nucleoside tr 63.5 12 0.00025 29.9 4.0 43 28-71 142-184 (418)
207 COG2807 CynX Cyanate permease 63.4 37 0.0008 27.2 6.5 60 4-64 119-183 (395)
208 KOG3762|consensus 62.3 15 0.00033 30.9 4.4 56 3-58 478-538 (618)
209 PRK11102 bicyclomycin/multidru 60.7 41 0.0009 25.8 6.6 36 7-43 310-346 (377)
210 PF01535 PPR: PPR repeat; Int 60.3 11 0.00023 17.3 2.1 19 73-91 10-28 (31)
211 PF07857 DUF1632: CEO family ( 60.3 65 0.0014 24.2 7.1 50 17-66 76-135 (254)
212 TIGR00756 PPR pentatricopeptid 58.6 13 0.00029 17.3 2.4 21 72-92 9-29 (35)
213 PF04281 Tom22: Mitochondrial 58.0 56 0.0012 22.1 6.6 24 9-32 60-83 (137)
214 PF08997 UCR_6-4kD: Ubiquinol- 57.9 33 0.00071 19.4 5.5 40 10-49 3-42 (56)
215 PF07721 TPR_4: Tetratricopept 56.5 12 0.00025 17.1 1.8 15 73-87 11-25 (26)
216 KOG2513|consensus 56.5 1.1E+02 0.0025 26.1 8.4 15 60-74 587-601 (647)
217 PF13041 PPR_2: PPR repeat fam 56.2 16 0.00035 19.4 2.6 22 72-93 12-33 (50)
218 PF06779 DUF1228: Protein of u 55.8 46 0.001 20.5 7.1 57 3-63 13-74 (85)
219 KOG2504|consensus 55.8 6.4 0.00014 32.6 1.3 62 6-67 410-476 (509)
220 COG2271 UhpC Sugar phosphate p 55.5 12 0.00025 30.5 2.6 54 8-61 370-428 (448)
221 PRK00888 ftsB cell division pr 55.3 34 0.00074 21.9 4.4 35 71-105 28-62 (105)
222 PF13829 DUF4191: Domain of un 55.2 83 0.0018 23.2 6.9 48 44-91 50-99 (224)
223 PF11151 DUF2929: Protein of u 54.8 38 0.00081 19.1 5.7 40 31-70 13-56 (57)
224 TIGR00711 efflux_EmrB drug res 52.8 24 0.00053 28.2 4.2 37 7-43 371-407 (485)
225 TIGR02978 phageshock_pspC phag 52.4 66 0.0014 21.3 7.0 29 44-72 30-64 (121)
226 cd00280 TRFH Telomeric Repeat 51.8 60 0.0013 23.4 5.4 20 74-93 122-141 (200)
227 PF01306 LacY_symp: LacY proto 51.0 62 0.0013 26.2 6.1 60 4-63 332-396 (412)
228 PF13000 Acatn: Acetyl-coenzym 50.4 40 0.00086 28.2 4.9 34 10-43 144-177 (544)
229 TIGR00986 3a0801s05tom22 mitoc 48.2 87 0.0019 21.4 5.9 23 9-31 58-80 (145)
230 PF06645 SPC12: Microsomal sig 46.7 63 0.0014 19.4 5.2 33 23-55 11-44 (76)
231 PF02487 CLN3: CLN3 protein; 46.7 31 0.00067 27.8 3.8 46 21-66 144-194 (402)
232 TIGR00710 efflux_Bcr_CflA drug 46.5 1.1E+02 0.0024 23.3 6.9 46 5-51 321-370 (385)
233 PF14559 TPR_19: Tetratricopep 45.8 31 0.00067 19.2 2.9 17 74-90 2-18 (68)
234 PF12854 PPR_1: PPR repeat 44.9 25 0.00055 17.2 2.1 17 73-89 17-33 (34)
235 PF06609 TRI12: Fungal trichot 44.5 1.7E+02 0.0037 25.1 7.9 29 44-72 531-559 (599)
236 TIGR00926 2A1704 Peptide:H+ sy 43.8 1.4E+02 0.0031 25.8 7.5 50 10-59 591-644 (654)
237 PF10183 ESSS: ESSS subunit of 42.8 89 0.0019 20.0 5.5 27 44-70 58-85 (105)
238 PRK14995 methyl viologen resis 42.5 38 0.00082 27.6 3.9 38 6-43 373-410 (495)
239 COG2270 Permeases of the major 42.4 35 0.00075 27.8 3.4 66 3-68 360-430 (438)
240 COG3104 PTR2 Dipeptide/tripept 41.0 16 0.00035 30.2 1.5 59 4-62 137-201 (498)
241 PRK13453 F0F1 ATP synthase sub 41.0 1.2E+02 0.0026 21.1 5.7 23 44-66 17-39 (173)
242 PF07719 TPR_2: Tetratricopept 41.0 31 0.00066 16.1 2.0 19 73-91 11-29 (34)
243 PRK11187 replication initiatio 40.5 23 0.0005 25.1 1.9 26 65-90 140-165 (182)
244 PRK09848 glucuronide transport 40.5 1.9E+02 0.0041 23.1 8.5 32 9-40 134-171 (448)
245 PRK05988 formate dehydrogenase 39.6 57 0.0012 22.5 3.8 8 66-73 1-8 (156)
246 COG3462 Predicted membrane pro 39.4 1.1E+02 0.0023 19.9 4.9 25 79-103 87-111 (117)
247 KOG4686|consensus 39.0 60 0.0013 25.5 4.1 57 7-63 375-439 (459)
248 KOG1278|consensus 38.2 70 0.0015 27.1 4.6 40 11-50 354-400 (628)
249 PRK11462 putative transporter; 37.5 2.2E+02 0.0048 23.0 8.1 24 18-41 359-382 (460)
250 PF12273 RCR: Chitin synthesis 36.6 18 0.00039 24.0 0.9 14 46-59 1-14 (130)
251 PF13432 TPR_16: Tetratricopep 36.3 77 0.0017 17.4 4.1 25 72-96 6-30 (65)
252 PHA02898 virion envelope prote 36.1 1.1E+02 0.0024 19.0 5.4 20 44-63 43-62 (92)
253 PF04024 PspC: PspC domain; I 35.5 88 0.0019 17.8 4.6 27 44-70 30-60 (61)
254 PF13812 PPR_3: Pentatricopept 35.4 48 0.001 15.3 2.2 18 74-91 12-29 (34)
255 KOG3764|consensus 34.9 51 0.0011 26.9 3.3 46 17-62 400-449 (464)
256 TIGR00926 2A1704 Peptide:H+ sy 34.9 2.4E+02 0.0052 24.4 7.5 58 6-63 107-178 (654)
257 PF13174 TPR_6: Tetratricopept 34.1 39 0.00085 15.5 1.8 18 74-91 11-28 (33)
258 PF14715 FixP_N: N-terminal do 34.1 86 0.0019 17.3 3.6 25 44-68 23-47 (51)
259 PRK10473 multidrug efflux syst 34.0 1.9E+02 0.004 22.4 6.4 46 8-53 314-360 (392)
260 COG3104 PTR2 Dipeptide/tripept 33.0 1.3E+02 0.0028 25.1 5.4 40 2-41 412-451 (498)
261 PF02990 EMP70: Endomembrane p 32.7 89 0.0019 26.1 4.6 39 11-49 288-333 (521)
262 PHA03048 IMV membrane protein; 31.7 1.3E+02 0.0029 18.7 5.8 20 44-63 42-61 (93)
263 KOG2615|consensus 31.6 40 0.00086 27.4 2.2 37 7-43 375-411 (451)
264 PF03825 Nuc_H_symport: Nucleo 31.1 2.8E+02 0.006 22.2 8.0 23 48-70 161-183 (400)
265 COG1113 AnsP Gamma-aminobutyra 30.0 1.5E+02 0.0033 24.4 5.2 18 57-74 113-130 (462)
266 TIGR02230 ATPase_gene1 F0F1-AT 29.6 1.5E+02 0.0033 18.8 7.8 27 17-43 39-66 (100)
267 PF06667 PspB: Phage shock pro 29.6 1.3E+02 0.0029 18.0 4.2 8 83-90 41-48 (75)
268 KOG2325|consensus 29.5 26 0.00057 29.0 0.9 39 5-43 409-447 (488)
269 PF03925 SeqA: SeqA protein; 28.7 29 0.00064 24.8 1.0 26 65-90 148-173 (190)
270 TIGR00774 NhaB Na+/H+ antiport 28.6 95 0.0021 25.8 3.9 18 75-92 271-288 (515)
271 COG1288 Predicted membrane pro 28.5 1.4E+02 0.0031 24.5 4.8 19 44-62 217-235 (481)
272 COG3461 Uncharacterized conser 28.4 1.2E+02 0.0026 18.9 3.5 40 67-106 45-87 (103)
273 PF04494 TFIID_90kDa: WD40 ass 28.3 59 0.0013 21.9 2.4 32 73-104 52-84 (142)
274 PF14689 SPOB_a: Sensor_kinase 28.2 61 0.0013 18.4 2.1 19 73-91 33-51 (62)
275 cd08044 TAF5_NTD2 TAF5_NTD2 is 28.2 65 0.0014 21.4 2.6 31 73-103 41-72 (133)
276 PF15050 SCIMP: SCIMP protein 27.7 41 0.0009 22.2 1.4 17 71-87 32-48 (133)
277 PF13374 TPR_10: Tetratricopep 27.2 82 0.0018 15.2 2.4 18 73-90 12-29 (42)
278 PF01306 LacY_symp: LacY proto 27.0 3.5E+02 0.0075 22.0 10.0 42 29-70 147-192 (412)
279 PF08069 Ribosomal_S13_N: Ribo 26.7 1.3E+02 0.0029 17.2 3.8 28 64-93 17-44 (60)
280 PF13181 TPR_8: Tetratricopept 26.6 81 0.0017 14.6 2.3 18 73-90 11-28 (34)
281 COG3067 NhaB Na+/H+ antiporter 26.2 1.2E+02 0.0026 24.1 3.9 60 44-103 235-300 (516)
282 COG4858 Uncharacterized membra 25.9 1.5E+02 0.0033 21.4 4.0 9 95-103 40-48 (226)
283 KOG4040|consensus 25.4 1.2E+02 0.0026 21.2 3.4 30 44-73 127-156 (186)
284 KOG4112|consensus 25.2 1.9E+02 0.004 18.3 5.2 21 23-43 26-46 (101)
285 PF01528 Herpes_glycop: Herpes 25.0 1.1E+02 0.0025 24.4 3.7 12 6-17 256-267 (374)
286 PF11286 DUF3087: Protein of u 24.8 2.5E+02 0.0055 19.7 5.5 12 10-21 4-15 (165)
287 COG1422 Predicted membrane pro 24.4 2.8E+02 0.0061 20.1 10.1 11 56-66 58-68 (201)
288 PF01733 Nucleoside_tran: Nucl 24.0 26 0.00056 26.8 0.0 51 22-72 30-89 (309)
289 COG3057 SeqA Negative regulato 23.9 54 0.0012 22.6 1.5 24 65-88 139-162 (181)
290 PF11292 DUF3093: Protein of u 23.7 22 0.00048 24.2 -0.4 13 69-81 125-137 (143)
291 PF04117 Mpv17_PMP22: Mpv17 / 23.5 74 0.0016 18.2 1.9 22 10-31 39-60 (68)
292 TIGR03032 conserved hypothetic 23.2 27 0.00058 27.3 -0.1 10 64-73 202-211 (335)
293 TIGR00939 2a57 Equilibrative N 22.6 4.3E+02 0.0092 21.5 7.9 24 48-71 177-200 (437)
294 PF04145 Ctr: Ctr copper trans 22.5 1.8E+02 0.0039 19.2 3.9 29 44-72 18-46 (144)
295 PHA02585 16 small terminase pr 22.5 1.9E+02 0.0042 20.0 3.9 36 66-107 75-110 (161)
296 PF13721 SecD-TM1: SecD export 22.5 1.5E+02 0.0033 18.7 3.3 34 44-77 6-39 (101)
297 COG2807 CynX Cyanate permease 22.5 4.2E+02 0.0092 21.5 7.2 61 13-73 240-301 (395)
298 COG5415 Predicted integral mem 21.5 3.4E+02 0.0074 20.0 7.1 12 44-55 66-77 (251)
299 PF07214 DUF1418: Protein of u 21.4 1.6E+02 0.0034 18.7 3.1 35 13-49 35-69 (96)
300 PRK10621 hypothetical protein; 20.9 3.6E+02 0.0078 20.1 5.9 36 11-47 173-208 (266)
301 PF13176 TPR_7: Tetratricopept 20.6 1.2E+02 0.0027 14.6 2.5 16 73-88 9-24 (36)
302 PF05767 Pox_A14: Poxvirus vir 20.5 2.3E+02 0.005 17.7 5.9 20 44-63 43-62 (92)
303 COG3296 Uncharacterized protei 20.3 2.8E+02 0.0062 18.6 6.3 29 15-43 14-47 (143)
304 COG1230 CzcD Co/Zn/Cd efflux s 20.3 4.2E+02 0.0091 20.5 6.7 34 15-48 153-187 (296)
No 1
>KOG0569|consensus
Probab=99.90 E-value=1.2e-22 Score=161.61 Aligned_cols=138 Identities=22% Similarity=0.275 Sum_probs=112.7
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHh-
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------HWQIVCYFCAATACISFIIVTFMPETPAWYAS- 75 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~- 75 (164)
...|+|+.|++|++.||..+++.+++..+|.+++..++... .|++++.+..+|+++.++..+++|||||||+.
T Consensus 135 ~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~ 214 (485)
T KOG0569|consen 135 GLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIK 214 (485)
T ss_pred HHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence 46799999999999999999999999999999998888766 79999999999999999999999999999997
Q ss_pred cCCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhh--hhcccchhhhhhccchH-HHHHHHHHHHHHH
Q psy66 76 KGLVVKSSASLNWLRNSSAIANAEIADILQSISER--EDDKKSCGQTLREFTPI-RILTTRNVASLQC 140 (164)
Q Consensus 76 ~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~-~~~~~~~l~~~~~ 140 (164)
|||.+||++.++++++++++..+..++..+.++++ ++++.+++|+++++..| .+.+++.+.+.|.
T Consensus 215 k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq 282 (485)
T KOG0569|consen 215 KGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQ 282 (485)
T ss_pred cCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHH
Confidence 99999999999999997543333323223322222 23667899999997555 5567777777665
No 2
>KOG0254|consensus
Probab=99.79 E-value=3.9e-18 Score=138.28 Aligned_cols=141 Identities=26% Similarity=0.386 Sum_probs=115.9
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhcC
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFMPETPAWYASKG 77 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~~ 77 (164)
.++|+|++|++|++.||...+..+..+.+|.+++.+++... +||..+.+..+|+++..+..+++||||||++++|
T Consensus 161 ~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g 240 (513)
T KOG0254|consen 161 VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKG 240 (513)
T ss_pred hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcC
Confidence 57899999999999999999999999999999998888887 5999999999999999888889999999999999
Q ss_pred CHHHHHHHHHHHhC-CChhhHHHHHHHHHH-HHh--hhhcccchhhhhhccchHHHHHHHHHHHHHHHhh
Q psy66 78 LVVKSSASLNWLRN-SSAIANAEIADILQS-ISE--REDDKKSCGQTLREFTPIRILTTRNVASLQCSIE 143 (164)
Q Consensus 78 ~~~~a~~~l~~i~~-~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 143 (164)
+.++|++.++++++ ++.+...+.++++.. ..+ ....+..+.++++...+++..+++.+..+|...+
T Consensus 241 ~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG 310 (513)
T KOG0254|consen 241 RLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTG 310 (513)
T ss_pred ChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhC
Confidence 99999999999998 445566666665522 111 1122235778888667777888899988887533
No 3
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.74 E-value=3e-21 Score=153.40 Aligned_cols=138 Identities=30% Similarity=0.499 Sum_probs=108.5
Q ss_pred CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h---HHHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q psy66 2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H---WQIVCYFCAATACISFIIVTFMPETPAWYA 74 (164)
Q Consensus 2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~---Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~ 74 (164)
.+.+++|+.|++|+++||+..++.+.++.+|.+++..++... + ||+.+.++.+|+++.++..+++|||||||+
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~ 199 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLL 199 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceec
Confidence 457889999999999999999999999999999998887655 5 999999999999888888899999999999
Q ss_pred hcCCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhhhcccchhhhhhccc-hHHHHHHHHHHHHHH
Q psy66 75 SKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLREFT-PIRILTTRNVASLQC 140 (164)
Q Consensus 75 ~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~~ 140 (164)
.|||.|||++.++++++.+ ..+++.++..++.++.++++.++.++++++. ++++++.+.+.+++.
T Consensus 200 ~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 265 (451)
T PF00083_consen 200 SKGRDEEAEKVLRKLRGKE-IEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQ 265 (451)
T ss_pred ccccccccccccccccccc-cccccccccccccccccccceeeeecccccccccccccccccccccc
Confidence 9999999999999977653 2333333333332222223378899998865 566666666666553
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.72 E-value=8.5e-17 Score=130.04 Aligned_cols=89 Identities=19% Similarity=0.307 Sum_probs=77.3
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---------------------------hHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---------------------------HWQIVCYFCAAT 55 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---------------------------~Wr~~~~~~~~~ 55 (164)
+..++|+.|++|+++||+..++.+.++.+|.++++.++... +||+++.++++|
T Consensus 134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip 213 (502)
T TIGR00887 134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP 213 (502)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence 56788999999999999999999999999998888776421 599999999999
Q ss_pred HHHHHHHHhhcCCchHHHHhcCCHH-HHHHHHHHHhC
Q psy66 56 ACISFIIVTFMPETPAWYASKGLVV-KSSASLNWLRN 91 (164)
Q Consensus 56 ~~l~~~~~~~~pESp~~l~~~~~~~-~a~~~l~~i~~ 91 (164)
+++.++..+++||||||++.|+|.+ ++++.+++..+
T Consensus 214 ~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 214 ALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred HHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 9988888899999999999998874 57777777765
No 5
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.70 E-value=7.7e-16 Score=129.05 Aligned_cols=91 Identities=20% Similarity=0.412 Sum_probs=82.0
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------------hHHHHHHHHHHHHHHHHHHHhh
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----------------HWQIVCYFCAATACISFIIVTF 65 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------------~Wr~~~~~~~~~~~l~~~~~~~ 65 (164)
+++++++.|++|++.||...+..+.++.+|.++++.++..+ +||+++++.++|+++.++..++
T Consensus 274 p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 274 PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999998765432 5999999999999888888899
Q ss_pred cCCchHHHHhcCCHHHHHHHHHHHhCCC
Q psy66 66 MPETPAWYASKGLVVKSSASLNWLRNSS 93 (164)
Q Consensus 66 ~pESp~~l~~~~~~~~a~~~l~~i~~~~ 93 (164)
+||||+|++.+||.+||.++++++++.|
T Consensus 354 lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 354 MPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred cCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 9999999999999999999999998764
No 6
>KOG0255|consensus
Probab=99.68 E-value=1.3e-15 Score=123.59 Aligned_cols=136 Identities=19% Similarity=0.209 Sum_probs=102.6
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhcCCHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-HWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVK 81 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~~~~~~ 81 (164)
+++.++++|+.++++|+..+++....+..|.+..++.++.. +||+.+++.++|+++.++..++.||||||++.+||.++
T Consensus 190 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~ 269 (521)
T KOG0255|consen 190 TVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDE 269 (521)
T ss_pred HHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHH
Confidence 46678899999999999999997777777777777777777 99999999999999888886667799999999999999
Q ss_pred HHHHHHHHhCCC---hhhHHHHHHHHHH---HHhhhhcccchhhhhhccchHHHHHHHHHHHH
Q psy66 82 SSASLNWLRNSS---AIANAEIADILQS---ISEREDDKKSCGQTLREFTPIRILTTRNVASL 138 (164)
Q Consensus 82 a~~~l~~i~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 138 (164)
|.+.++++.+.| .+.++..++.... ......++.++.++++.+..++..+...+.++
T Consensus 270 a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 332 (521)
T KOG0255|consen 270 AIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWF 332 (521)
T ss_pred HHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHH
Confidence 999999997643 2222222222111 11122344779999999966666555555553
No 7
>TIGR00898 2A0119 cation transport protein.
Probab=99.66 E-value=2.9e-15 Score=120.87 Aligned_cols=135 Identities=18% Similarity=0.272 Sum_probs=102.9
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhcCCHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-HWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVK 81 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~~~~~~ 81 (164)
+...+++.|+.|+++|+...++.+.++.+|.++++.+++.. +||+.+++.+++.++..+..+++||||+|+..+++.++
T Consensus 199 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~ 278 (505)
T TIGR00898 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEE 278 (505)
T ss_pred HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHH
Confidence 45667899999999999999999999999999999998877 99999999999988887777889999999999999999
Q ss_pred HHHHHHHHhCCChh-hHHHHHHHHHHH-HhhhhcccchhhhhhccchHHHHHHHHHHH
Q psy66 82 SSASLNWLRNSSAI-ANAEIADILQSI-SEREDDKKSCGQTLREFTPIRILTTRNVAS 137 (164)
Q Consensus 82 a~~~l~~i~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 137 (164)
|.+.+++..+.+.. ..++..+....+ .+.+.++.++.++++++..++..+.....+
T Consensus 279 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 336 (505)
T TIGR00898 279 ALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLW 336 (505)
T ss_pred HHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHH
Confidence 99999988764322 111111111111 111122468899999988877666554433
No 8
>KOG0253|consensus
Probab=99.54 E-value=9.8e-14 Score=106.62 Aligned_cols=131 Identities=14% Similarity=0.142 Sum_probs=97.4
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhcCCHHH
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVK 81 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~~~~~~ 81 (164)
.++-.|..|..+|+..+-+. .+|.+|......+++.. ||||......+|..+...+.+|+||||||++.+|+++|
T Consensus 187 ~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k 265 (528)
T KOG0253|consen 187 SAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYK 265 (528)
T ss_pred HHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHH
Confidence 34567999999999888877 99999999999999888 99999999999988888888999999999999999999
Q ss_pred HHHHHHHHhCCChh----------hHHHHHH--HHHHH---HhhhhcccchhhhhhccchHHHHHHHHHHH
Q psy66 82 SSASLNWLRNSSAI----------ANAEIAD--ILQSI---SEREDDKKSCGQTLREFTPIRILTTRNVAS 137 (164)
Q Consensus 82 a~~~l~~i~~~~~~----------~~~~~~~--~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 137 (164)
|.+.++|+++.|.. ..+++++ ...+. .+.+....+..+++..+.++++++....++
T Consensus 266 AletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwf 336 (528)
T KOG0253|consen 266 ALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWF 336 (528)
T ss_pred HHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHH
Confidence 99999999875522 1111111 11000 011223456788888666666665444433
No 9
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.40 E-value=2e-11 Score=97.78 Aligned_cols=90 Identities=24% Similarity=0.476 Sum_probs=78.3
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------------hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------------HWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------------~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
+.++.++.|++|+++||+.+++.+.+..+|.+++++++... +||+.+++.+++.++..+..+++||||
T Consensus 139 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~ 218 (479)
T PRK10077 139 MLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETP 218 (479)
T ss_pred hHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 45678999999999999999999999999999988776432 799999999888888777788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhCC
Q psy66 71 AWYASKGLVVKSSASLNWLRNS 92 (164)
Q Consensus 71 ~~l~~~~~~~~a~~~l~~i~~~ 92 (164)
+|+..+++.+++++..+++.+.
T Consensus 219 ~~l~~~~~~~~~~~~~~~~~~~ 240 (479)
T PRK10077 219 RYLMSRGKQEQAEGILRKIMGN 240 (479)
T ss_pred HHHHHcCCHHHHHHHHHHHcCC
Confidence 9999999999998888877653
No 10
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.26 E-value=2.6e-10 Score=90.35 Aligned_cols=91 Identities=34% Similarity=0.545 Sum_probs=77.1
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHH---HhH----hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHh
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAG---YML----HWQIVCYFCAATACISFIIVTFMPETPAWYAS 75 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~---~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~ 75 (164)
+....++.|+.|+++|++..++.+.+..+|.++++.++ ... +||+.+++..++.++.++..+++||+|+++..
T Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~ 225 (481)
T TIGR00879 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVG 225 (481)
T ss_pred hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34567899999999999999999999999999999998 432 99999999877777777777889999999998
Q ss_pred cCCHHHHHHHHHHHhCCC
Q psy66 76 KGLVVKSSASLNWLRNSS 93 (164)
Q Consensus 76 ~~~~~~a~~~l~~i~~~~ 93 (164)
+++.+++.+..++..+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~ 243 (481)
T TIGR00879 226 KGRVEEARKSLARLRGTS 243 (481)
T ss_pred cCChHHHHHHHHHHhCCC
Confidence 888888887777765543
No 11
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.21 E-value=2.9e-11 Score=97.67 Aligned_cols=99 Identities=16% Similarity=0.060 Sum_probs=72.6
Q ss_pred chhhhhhccCchhHHHHHhH-HHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhc---
Q psy66 5 TYVYVSEISLPAYRGLFASL-GPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETPAWYASK--- 76 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~--- 76 (164)
...++.|..|++.||...+. .+++...|.+...+.+... +|+..++...+++++.++..+++||||+|++++
T Consensus 363 ~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~ 442 (490)
T PRK10642 363 MASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATP 442 (490)
T ss_pred HHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccc
Confidence 45677899999999987774 6666655554444444333 578877777777777777777889999999965
Q ss_pred --CCHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q psy66 77 --GLVVKSSASLNWLRNSSAIANAEIADILQS 106 (164)
Q Consensus 77 --~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~ 106 (164)
||+|||+++++++++ +.+.|.+++++.
T Consensus 443 ~~~~~~~a~~~l~~~~~---~~~~~~~~i~~~ 471 (490)
T PRK10642 443 AASDIQEAKEILVEHYD---NIEQKIDDIDQE 471 (490)
T ss_pred cccchhhHHHHhhcccc---cccchhhhcccc
Confidence 999999999999974 345555555543
No 12
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.10 E-value=1.1e-09 Score=88.58 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=58.9
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh------------HhHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM------------LHWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~------------~~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
+.+..++.|+.|+++||+..++.+.+..+|.++++.+... .+||+.|++..++.++.++.+.++||||
T Consensus 137 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp 216 (490)
T PRK10642 137 TGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETP 216 (490)
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 4567789999999999999999998888888877755421 1899999998877776666677899999
Q ss_pred HHHHh
Q psy66 71 AWYAS 75 (164)
Q Consensus 71 ~~l~~ 75 (164)
+|...
T Consensus 217 ~~~~~ 221 (490)
T PRK10642 217 AFQQH 221 (490)
T ss_pred hHHHH
Confidence 98643
No 13
>TIGR00895 2A0115 benzoate transport.
Probab=98.81 E-value=2.4e-08 Score=77.48 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=67.3
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHH-HHHHHHHHhhcCCchHHHHhcC
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAAT-ACISFIIVTFMPETPAWYASKG 77 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~-~~l~~~~~~~~pESp~~l~~~~ 77 (164)
+....++.|+.|+++|++..++.+.+..+|..+++.++... +||..+.+.++. .+...+...++||+|++...+
T Consensus 124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 202 (398)
T TIGR00895 124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK- 202 (398)
T ss_pred hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-
Confidence 45677899999999999999999999999999999888665 999988887644 444455567789999887665
Q ss_pred CHHHHHHHHHHHh
Q psy66 78 LVVKSSASLNWLR 90 (164)
Q Consensus 78 ~~~~a~~~l~~i~ 90 (164)
+.+++.+..++..
T Consensus 203 ~~~~~~~~~~~~~ 215 (398)
T TIGR00895 203 RPETVRRIVNAIA 215 (398)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 14
>PRK09952 shikimate transporter; Provisional
Probab=98.80 E-value=1.2e-08 Score=81.45 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=61.4
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh------------HhHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM------------LHWQIVCYFCAATACISFIIVTFMPETPA 71 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~------------~~Wr~~~~~~~~~~~l~~~~~~~~pESp~ 71 (164)
.+..++.|+.|+++||+..+..+.++.+|.+++..+... .+||+.|++..++.++.+..+..+||||+
T Consensus 145 ~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~ 224 (438)
T PRK09952 145 GAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAE 224 (438)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 456799999999999999999999999999888665432 28999999999887776666777999999
Q ss_pred HHHhcCC
Q psy66 72 WYASKGL 78 (164)
Q Consensus 72 ~l~~~~~ 78 (164)
|...+++
T Consensus 225 ~~~~~~~ 231 (438)
T PRK09952 225 FEQQQHE 231 (438)
T ss_pred HHHHHhh
Confidence 9765433
No 15
>KOG0252|consensus
Probab=98.78 E-value=7.2e-09 Score=82.00 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=70.0
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-------------------hHHHHHHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-------------------HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-------------------~Wr~~~~~~~~~~~l~~~~~ 63 (164)
+.+-+..+|.+..+.||...+....+..+|.+.+.+++..+ -||.++.++.+|+++.+..+
T Consensus 163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~R 242 (538)
T KOG0252|consen 163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFR 242 (538)
T ss_pred cchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55677899999999999999999999999998888887655 79999999999999999999
Q ss_pred hhcCCchHHHH-hcCCHHHHH
Q psy66 64 TFMPETPAWYA-SKGLVVKSS 83 (164)
Q Consensus 64 ~~~pESp~~l~-~~~~~~~a~ 83 (164)
+-||||+||-. ..++.++|.
T Consensus 243 l~M~Et~~Y~al~~~~~~~a~ 263 (538)
T KOG0252|consen 243 LKMPETARYTALVSKKLKQAA 263 (538)
T ss_pred hcCCcchhHHHHhhcCHhhhh
Confidence 99999999984 334555555
No 16
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.72 E-value=2.7e-07 Score=73.49 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=57.9
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh------------HhHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM------------LHWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~------------~~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
+.+..++.|+.|+++||+..++.+.+...|.++++.+... .+||+.|+++++++++.+..+..+||||
T Consensus 143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~ 222 (432)
T PRK10406 143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETS 222 (432)
T ss_pred hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4567899999999999999999888888888887765432 2899999999999888777777889998
Q ss_pred HH
Q psy66 71 AW 72 (164)
Q Consensus 71 ~~ 72 (164)
++
T Consensus 223 ~~ 224 (432)
T PRK10406 223 QQ 224 (432)
T ss_pred hH
Confidence 64
No 17
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.70 E-value=1.8e-07 Score=72.90 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=62.5
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h--HHHHHHHHHHHHHHHHHHHhhcCCchHHHHhc
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H--WQIVCYFCAATACISFIIVTFMPETPAWYASK 76 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~--Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~ 76 (164)
+....++.|+.|+++|++..+..+.+..+|..+++.++... + ||+.+.+..++.++.++....+||+|++...+
T Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (405)
T TIGR00891 119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKH 198 (405)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHh
Confidence 34567889999999999999999999999999999887665 4 99999998888777777777899999876443
Q ss_pred C
Q psy66 77 G 77 (164)
Q Consensus 77 ~ 77 (164)
+
T Consensus 199 ~ 199 (405)
T TIGR00891 199 A 199 (405)
T ss_pred h
Confidence 3
No 18
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.65 E-value=1.9e-07 Score=73.12 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=57.5
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH-HHHHhhcCCchHHH
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS-FIIVTFMPETPAWY 73 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp~~l 73 (164)
...+.|+.|+++|+++.++.+.+..+|.++++.++..+ +||+.+.+.++++++. ++..+++||+|++.
T Consensus 100 ~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~ 172 (368)
T TIGR00903 100 FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA 172 (368)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 34568999999999999999999999999999998877 9999999877765554 44566789999874
No 19
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.52 E-value=1.3e-06 Score=69.10 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=57.2
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETPAWY 73 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l 73 (164)
+....++.|+.|+++|++..++.+.+..+|.++++.+.... +||+.+++..++.++.+......||+++|.
T Consensus 125 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~ 199 (426)
T PRK12307 125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWE 199 (426)
T ss_pred HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHH
Confidence 34567889999999999999999999999999998876654 999999987766655555555678887663
No 20
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.51 E-value=1.3e-06 Score=67.32 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=56.5
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCCchH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPETPA 71 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pESp~ 71 (164)
+....++.|+.|+++|++..++.+....+|.++++.++... +||+.+.+.+++.++..+. ..+.||+|+
T Consensus 101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 45567899999999999999999999999999999988765 9999999888776665443 445677653
No 21
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.46 E-value=4.6e-07 Score=71.82 Aligned_cols=68 Identities=10% Similarity=0.133 Sum_probs=56.3
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----------hHHHHHHHHHHHHHHHH-HHHhhcCCchH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----------HWQIVCYFCAATACISF-IIVTFMPETPA 71 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----------~Wr~~~~~~~~~~~l~~-~~~~~~pESp~ 71 (164)
....++.|+.|+++||+..++.+.+.++|.++++.++..+ +||+.+.+.+++.++.. +..+++||+|+
T Consensus 116 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 116 GILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3456789999999999999999999999999998887542 89999999888876654 45567899984
No 22
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.44 E-value=2.1e-06 Score=68.92 Aligned_cols=69 Identities=16% Similarity=0.308 Sum_probs=56.8
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHH-hhcCCchH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIV-TFMPETPA 71 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~-~~~pESp~ 71 (164)
+....++.|+.|+++|++..++...+..+|.++++.++..+ +||+.+++.+++.++..+.. .+.+|+|+
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~ 224 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS 224 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence 45667899999999999999999999999999988887655 89999999888876665544 44678875
No 23
>KOG2533|consensus
Probab=98.39 E-value=2.4e-07 Score=75.06 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=59.3
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----------hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----------HWQIVCYFCAATACISFI-IVTFMPETPA 71 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----------~Wr~~~~~~~~~~~l~~~-~~~~~pESp~ 71 (164)
+....+++-+..+++||...+.+....++|.+++.+++..+ +||++|++.++..++.-+ ..+++|+.|.
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 44556788999999999999999999999999999998882 999999999988777654 5577999996
No 24
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.32 E-value=2.1e-06 Score=66.40 Aligned_cols=73 Identities=23% Similarity=0.434 Sum_probs=59.9
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------------hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------------HWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------------~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
+..+.++.|+.|+++|++..+..+.+..+|.++++.++... +||+.+.+..++.++.+.....+||+|
T Consensus 115 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
T TIGR00883 115 GGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETP 194 (394)
T ss_pred cccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 45677899999999999999999999999999888765422 899999988887776666667789998
Q ss_pred HHHHh
Q psy66 71 AWYAS 75 (164)
Q Consensus 71 ~~l~~ 75 (164)
++...
T Consensus 195 ~~~~~ 199 (394)
T TIGR00883 195 VFEKA 199 (394)
T ss_pred hHHHH
Confidence 77544
No 25
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.28 E-value=7.2e-06 Score=64.43 Aligned_cols=73 Identities=21% Similarity=0.324 Sum_probs=59.1
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH-HHHhhcCCchHHHHhc
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF-IIVTFMPETPAWYASK 76 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~-~~~~~~pESp~~l~~~ 76 (164)
....++.|+.|+++|++..++.+.+..+|.++++.++... +||..+++.++..++.. ....++||+|++...+
T Consensus 123 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 200 (406)
T PRK11551 123 NLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAA 200 (406)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhcc
Confidence 3456889999999999999999999999999999988665 89999988776655544 3456689999876543
No 26
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.21 E-value=2.4e-05 Score=62.40 Aligned_cols=70 Identities=9% Similarity=0.067 Sum_probs=57.5
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH-HHHHhhcCCchHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS-FIIVTFMPETPAW 72 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp~~ 72 (164)
+....++.|+.|+++||+..++.+.+..+|.++++.++..+ +||+.+.+.+++.++. ++..+++||+|++
T Consensus 130 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~ 204 (434)
T PRK11663 130 PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQA 204 (434)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhh
Confidence 34567889999999999999999999999999998877665 9999999888776544 4455678998875
No 27
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.19 E-value=1.2e-05 Score=64.96 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=60.3
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHh
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETPAWYAS 75 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~ 75 (164)
....++.|..|+++|++..+....+..+|.++++.++..+ +||+.+++..++.++.++....+||++++...
T Consensus 128 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~ 203 (496)
T PRK03893 128 SSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEK 203 (496)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhh
Confidence 3456789999999999999999999999999999888766 99999998777766666666778999887543
No 28
>KOG2532|consensus
Probab=98.18 E-value=2.3e-05 Score=63.30 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=75.7
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHH-hhcCCchHHHHhc
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIV-TFMPETPAWYASK 76 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~-~~~pESp~~l~~~ 76 (164)
++.......|+|+++|+++.++...+..+|.+++..+++.+ ||+.+|++.++.+++..+.. ++..|+|.- +
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h 223 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---H 223 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---C
Confidence 34556788999999999999999999999999888776666 89999999999988876655 445666641 1
Q ss_pred CCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhh---hhcccchhhhhhccchHHHHH
Q psy66 77 GLVVKSSASLNWLRNSSAIANAEIADILQSISER---EDDKKSCGQTLREFTPIRILT 131 (164)
Q Consensus 77 ~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 131 (164)
.+ ..++|.+.+++...++ +..+..++++++++..+-..+
T Consensus 224 ~~----------------is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~ 265 (466)
T KOG2532|consen 224 PN----------------ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWI 265 (466)
T ss_pred CC----------------CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHH
Confidence 11 1223333333331111 114567899999887775544
No 29
>PRK15075 citrate-proton symporter; Provisional
Probab=98.15 E-value=1e-05 Score=64.52 Aligned_cols=71 Identities=27% Similarity=0.493 Sum_probs=52.7
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------------hHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------------HWQIVCYFCAATACISFIIVTFMPETPA 71 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------------~Wr~~~~~~~~~~~l~~~~~~~~pESp~ 71 (164)
..+.++.|+.|+++||+..++.+.+..+|..+++.++... +||+.|++..++..+.+......||++.
T Consensus 137 ~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~ 216 (434)
T PRK15075 137 GVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEE 216 (434)
T ss_pred HHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 4567899999999999999998887777666655554431 9999999876655444455566789877
Q ss_pred HHH
Q psy66 72 WYA 74 (164)
Q Consensus 72 ~l~ 74 (164)
+..
T Consensus 217 ~~~ 219 (434)
T PRK15075 217 FLA 219 (434)
T ss_pred HHH
Confidence 654
No 30
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.12 E-value=1.9e-05 Score=61.00 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=54.2
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h--------HHHHHHHHHHHHHHHHHHHhh-cCCc
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H--------WQIVCYFCAATACISFIIVTF-MPET 69 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~--------Wr~~~~~~~~~~~l~~~~~~~-~pES 69 (164)
...++.|++|+++|++..+..+.+..+|.++++.++..+ + ||..+++.++..++..+..++ .||+
T Consensus 104 ~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 104 LDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 455789999999999999999999999999999988665 6 999999998877666655543 5775
No 31
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.11 E-value=2.2e-05 Score=63.84 Aligned_cols=68 Identities=19% Similarity=0.183 Sum_probs=57.4
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFMPETPA 71 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~pESp~ 71 (164)
....++.|+.|+++||+..++.+.++.+|.++++.++..+ +||..+++.++..++..+..+++||+++
T Consensus 127 ~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~ 199 (491)
T PRK11010 127 VFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTD 199 (491)
T ss_pred HHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3456889999999999999999999999999998776655 7999999988887777666667899865
No 32
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.09 E-value=4.3e-06 Score=64.37 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=54.4
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHH-HHHHhH----hHHHHHHHHHHHHHHH-HHHHhhcCCchH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVY-YAGYML----HWQIVCYFCAATACIS-FIIVTFMPETPA 71 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~-~~~~~~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp~ 71 (164)
+....++.|+.|+++|++..++.+.+..+|..+++ .++... +||+.+.+.++..++. .+..++.||+|+
T Consensus 102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (379)
T TIGR00881 102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ 176 (379)
T ss_pred CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcc
Confidence 45667899999999999999999999999999998 454433 9999998887765554 444556788765
No 33
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.08 E-value=2.6e-05 Score=61.53 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=56.6
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhcCCchHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFMPETPAW 72 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~ 72 (164)
....++.|+.|+++|++..+....+..+|.++++.++..+ +||..+++.++..++..+..+++||+++.
T Consensus 114 ~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~ 187 (402)
T PRK11902 114 VFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP 187 (402)
T ss_pred HHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3456789999999999999999999999999998877655 89999998887766665556678887653
No 34
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.08 E-value=7.7e-05 Score=57.14 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=51.1
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHh
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVT 64 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~ 64 (164)
....++.|+.|+++|++..+..+.+..+|.++++.++..+ +||+.+++..+..++..+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999988776 999999888776655544433
No 35
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.02 E-value=4.5e-05 Score=63.96 Aligned_cols=68 Identities=19% Similarity=0.351 Sum_probs=54.7
Q ss_pred CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--------------------------hHHHHHHHHHHH
Q psy66 2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--------------------------HWQIVCYFCAAT 55 (164)
Q Consensus 2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--------------------------~Wr~~~~~~~~~ 55 (164)
.+.+..|+.|+.|+++|+...++.+.+..+|..+++.++..+ .||..|++.+++
T Consensus 190 ~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l 269 (633)
T TIGR00805 190 FPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGV 269 (633)
T ss_pred hhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 356778999999999999999999999999999998887654 177778887777
Q ss_pred HHHHHHHHhhcCCc
Q psy66 56 ACISFIIVTFMPET 69 (164)
Q Consensus 56 ~~l~~~~~~~~pES 69 (164)
.++..+..+++|+.
T Consensus 270 ~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 270 ALLTSIPFFFFPKA 283 (633)
T ss_pred HHHHHHHHHhCccc
Confidence 76665555667765
No 36
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.96 E-value=3.3e-05 Score=58.98 Aligned_cols=69 Identities=23% Similarity=0.367 Sum_probs=55.7
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCCchH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPETPA 71 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pESp~ 71 (164)
+....++.|+.|+++|++..+..+.+..+|.++++.++... +||+.+++.++..++..+. ..+++|.|+
T Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~ 177 (352)
T PF07690_consen 104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPP 177 (352)
T ss_dssp HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---ST
T ss_pred ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccc
Confidence 34567899999999999999999999999999999998877 8999999998887777553 355665543
No 37
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.92 E-value=1.5e-05 Score=62.97 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=56.1
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHH--HhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAG--YML----HWQIVCYFCAATACISFI-IVTFMPETPA 71 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~--~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~ 71 (164)
.+...++.+.|+++||+..++.+..-++|..+.+.+. ..+ +||..|+++++.+++..+ ..+.+.|+|.
T Consensus 137 p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 137 PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred HHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3455788999999999999999999999998888887 444 999999999999877754 4555677774
No 38
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.91 E-value=0.00028 Score=55.65 Aligned_cols=69 Identities=16% Similarity=0.092 Sum_probs=52.9
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTFMPETPA 71 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~~pESp~ 71 (164)
++...++.|+.|+++|+++.+..+....+|.++++.++..+ .|+..+.+.....++..+...++||+|+
T Consensus 107 pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~ 178 (393)
T PRK11195 107 PAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGA 178 (393)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 45567899999999999999999999999999999998877 4555555544444444445567899764
No 39
>PTZ00207 hypothetical protein; Provisional
Probab=97.90 E-value=6e-05 Score=62.57 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=61.4
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHH-HHHHHHhH--hHHHHHHHHHHHHHHH-HHHHhh--cCCchHHHHhcC
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLF-VYYAGYML--HWQIVCYFCAATACIS-FIIVTF--MPETPAWYASKG 77 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll-~~~~~~~~--~Wr~~~~~~~~~~~l~-~~~~~~--~pESp~~l~~~~ 77 (164)
.+...+.++.| ++||++.++...+.++|..+ +++..... +|+..+++.++.+++. ++...+ .|++|+|...++
T Consensus 140 ~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~ 218 (591)
T PTZ00207 140 GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEK 218 (591)
T ss_pred HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhccccc
Confidence 34556788886 78999999999999999975 44444444 8888777666654444 333333 588888888887
Q ss_pred CHHHHHHHHHHHhC
Q psy66 78 LVVKSSASLNWLRN 91 (164)
Q Consensus 78 ~~~~a~~~l~~i~~ 91 (164)
+.+++++..++..+
T Consensus 219 ~~~~~~~~~~~~~~ 232 (591)
T PTZ00207 219 HLDEEEKAQRLMRK 232 (591)
T ss_pred CCCHHHHHHHhhhh
Confidence 77777776666544
No 40
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.89 E-value=0.00038 Score=55.87 Aligned_cols=68 Identities=18% Similarity=0.114 Sum_probs=51.1
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHH-HHHHHHHHhH----hHHHHHHHHHHHHHHH-HHHHhhcCCchHH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGV-LFVYYAGYML----HWQIVCYFCAATACIS-FIIVTFMPETPAW 72 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~-ll~~~~~~~~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp~~ 72 (164)
....+.|+.|+++||+..++.+.+..+|. +.+++++... +||+.+++.+++.++. ++..+++||+|+.
T Consensus 141 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~ 214 (452)
T PRK11273 141 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQS 214 (452)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence 34567899999999999999999988876 4455543222 9999999888776554 4556678998864
No 41
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.88 E-value=0.00036 Score=56.02 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=56.2
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETPA 71 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~ 71 (164)
+....++.|+.|+++|++..++...+..+|..+++.++..+ +||+.+++...+.++..+ ..+++||.++
T Consensus 109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 34567889999999999999999999999999999998776 999999988877655544 4455777554
No 42
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.87 E-value=0.00014 Score=57.86 Aligned_cols=67 Identities=24% Similarity=0.280 Sum_probs=55.4
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCCchH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPETPA 71 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pESp~ 71 (164)
...++.|..|+++|++..+.......+|..+++.++..+ +||+.|++.++..++.++. .+++||+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 125 GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 456788999999999999999999999999998888766 8999999988887666544 456899864
No 43
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.00013 Score=57.56 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=55.2
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcC
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMP 67 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~p 67 (164)
+.+..+..++.|+++|+++.++...+..++..++..++.++ |||..|++.+..+++.++. ...+|
T Consensus 120 ~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 120 SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34566789999999999999999999999888888888777 9999999999988777655 45678
No 44
>PRK03545 putative arabinose transporter; Provisional
Probab=97.85 E-value=5.9e-05 Score=59.13 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=55.6
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETPA 71 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~ 71 (164)
....++.|+.|+++|++..+..+.+..+|..+++.++... +||+.+++.++.+++..+ ...++||.|+
T Consensus 117 ~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~ 189 (390)
T PRK03545 117 ITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS 189 (390)
T ss_pred HHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3456889999999999999999999999999999888665 999999998887666543 3455787653
No 45
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.85 E-value=7.5e-05 Score=58.92 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=56.1
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETPA 71 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~ 71 (164)
+..+.++.|+.|+++|++..+....+.++|.++++.++..+ +||+.+.+.++.+++..+ ....+||+|+
T Consensus 127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~ 200 (394)
T PRK10213 127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG 200 (394)
T ss_pred HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 34567889999999999999999999999999999998776 999999988776655443 3345798764
No 46
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.82 E-value=0.00018 Score=55.72 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=55.2
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETPA 71 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~ 71 (164)
....++.|+.|+++|++..+..+....+|..+++.++... +||..+.+.++..++..+ ..++.||+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 113 ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4567889999999999999999999999999998888765 899999887776555543 4456788764
No 47
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.75 E-value=0.00017 Score=47.42 Aligned_cols=66 Identities=29% Similarity=0.405 Sum_probs=53.1
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCCc
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPET 69 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pES 69 (164)
....++.|..|++.|++..+..+....+|..+++.+.... +|++.+.+..+..++..+. .++.||+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 4456789999999999999999999999999999888777 8999888877776655444 4445664
No 48
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.72 E-value=0.00015 Score=57.88 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=53.6
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh-H----hHHHHHHHHHHHHHHH-HHHHhhcCCchHH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM-L----HWQIVCYFCAATACIS-FIIVTFMPETPAW 72 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~-~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp~~ 72 (164)
...++.|+.|+++||+..++.+.+..+|..+++.+... . +||..+++.+++.++. ++..+++||+|+.
T Consensus 139 ~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~ 212 (438)
T TIGR00712 139 CGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQS 212 (438)
T ss_pred HHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHh
Confidence 45577899999999999999999999988887765432 2 8999999988876664 4455668998865
No 49
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.67 E-value=0.0004 Score=53.60 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=45.1
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--------------hHHHHH-HHHHHH-HHHHHHHHhhcC
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--------------HWQIVC-YFCAAT-ACISFIIVTFMP 67 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--------------~Wr~~~-~~~~~~-~~l~~~~~~~~p 67 (164)
....++.|+.|+++|+...++...+..+|..+++.++..+ +||+.+ ....+. .+...+...+.+
T Consensus 110 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 189 (366)
T TIGR00886 110 SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGA 189 (366)
T ss_pred hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 3456889999999999999998866666665555544322 599988 443433 333344455667
Q ss_pred CchH
Q psy66 68 ETPA 71 (164)
Q Consensus 68 ESp~ 71 (164)
|+|+
T Consensus 190 ~~~~ 193 (366)
T TIGR00886 190 DTPP 193 (366)
T ss_pred cCCc
Confidence 8764
No 50
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.66 E-value=0.0005 Score=53.37 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=55.2
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH-HHHhhcCCchH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF-IIVTFMPETPA 71 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~-~~~~~~pESp~ 71 (164)
....++.|+.|+++|++..++.+.+..+|..+++.++... +||+.+.+.++..++.. +..+++||+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (377)
T PRK11102 99 VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLP 171 (377)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 3456889999999999999999999999999999887666 99999988877765554 44567888753
No 51
>KOG2615|consensus
Probab=97.65 E-value=0.00018 Score=56.47 Aligned_cols=67 Identities=24% Similarity=0.227 Sum_probs=51.2
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-h--------H-HHHHHHHHHHHHH-HHHHHhhcCCch
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-H--------W-QIVCYFCAATACI-SFIIVTFMPETP 70 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-~--------W-r~~~~~~~~~~~l-~~~~~~~~pESp 70 (164)
++-++++|+.++++|+..++.++..+++|.++||.++.++ - | -.+.++..+.+.. .+...|++||+-
T Consensus 140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 4557899999999999999999999999999999998877 1 1 2223444444444 456678999993
No 52
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.65 E-value=0.00028 Score=55.26 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=53.4
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETP 70 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp 70 (164)
...++.|+.|+++|++..+....+..+|..+++.++... +||+.+.+.++..++..+ ...++||.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 112 GAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 456788999999999999999999999999888887665 999999998887655544 445689875
No 53
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.64 E-value=0.00036 Score=55.20 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=55.8
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCchHH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETPAW 72 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp~~ 72 (164)
...++.|+.|+++|++..++.+....+|..+++.++..+ +||+.+.+..+..++..+..+.+||+++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 202 (417)
T PRK10489 131 LLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPP 202 (417)
T ss_pred HhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 345678999999999999999999999999999988765 89999988887776666666778887643
No 54
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.59 E-value=0.00054 Score=53.98 Aligned_cols=69 Identities=26% Similarity=0.242 Sum_probs=53.1
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETPAW 72 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~~ 72 (164)
....++.|..|++.|++..++......+|..+++.++... +||+.+++.++..++..+ ..+.+||+++.
T Consensus 121 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (406)
T PRK15402 121 VGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGR 194 (406)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 4456788999999999988888877778888888876655 999999888777665544 34567988653
No 55
>PRK12382 putative transporter; Provisional
Probab=97.56 E-value=0.00036 Score=54.67 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=50.8
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
...++.|+.|+++|+++.+..+.+..+|..+++.++... +||.++.+..+..++.+......||.+
T Consensus 133 ~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (392)
T PRK12382 133 ALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVP 202 (392)
T ss_pred HHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 345778999999999999999999999999998887665 999887776665554444444556654
No 56
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.56 E-value=0.00035 Score=59.63 Aligned_cols=67 Identities=10% Similarity=0.008 Sum_probs=54.1
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
+..++++|+.|.+.||+..++.+....+|.++++.++..+ +...++++.++..++..+...++||+.
T Consensus 668 ~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 668 ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 4567899999999999999999999999999999998655 445667666666666666666789974
No 57
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.54 E-value=0.00023 Score=55.03 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=49.3
Q ss_pred hhhhhhccCchhHHHH--HhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCCchHHH
Q psy66 6 YVYVSEISLPAYRGLF--ASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPETPAWY 73 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~--~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pESp~~l 73 (164)
..+..|+.|++.|+.. .+....+.++|..+++.++... +||+.+++.+++.++..+. .+++||+|+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (375)
T TIGR00899 109 FALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGA 183 (375)
T ss_pred HHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCc
Confidence 3456788887777643 4666677778888888877655 8999999988876665544 45589988653
No 58
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.53 E-value=0.00061 Score=53.36 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=54.6
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH-HHHhhcCCchH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF-IIVTFMPETPA 71 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~-~~~~~~pESp~ 71 (164)
....++.|..|+++|++..+..+....+|.++++.++... +||+.+.+..+..++.. +..+++||+++
T Consensus 111 ~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 111 VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3556889999999999999999999999999998887665 89999988877665554 34566788753
No 59
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.46 E-value=0.00059 Score=53.52 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=51.4
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
....++.|..|+++|++..++.+.+..+|.++++.++..+ +||..+++..+.+++.+......||++
T Consensus 132 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (399)
T PRK05122 132 GSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVP 202 (399)
T ss_pred hHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3456678999999999999999999999988888887665 999998877776655544444456543
No 60
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.44 E-value=0.00073 Score=54.95 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=50.7
Q ss_pred hhhhc-cCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH-HHHhhcCCchH
Q psy66 8 YVSEI-SLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF-IIVTFMPETPA 71 (164)
Q Consensus 8 ~i~E~-~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~-~~~~~~pESp~ 71 (164)
.+.+. .|+++|++..++......+|..+++.++..+ +||+.|++.....++.. +..+++||+|.
T Consensus 118 ~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 118 GIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34444 5889999999999999999999999998877 99999998766555443 44566888763
No 61
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.41 E-value=0.0013 Score=58.49 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=51.2
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--h-----------HHHHHHHHHH-HHHHHHHHHhhcCC
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--H-----------WQIVCYFCAA-TACISFIIVTFMPE 68 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--~-----------Wr~~~~~~~~-~~~l~~~~~~~~pE 68 (164)
++...++.|++|+++|+++.++.+.+..+|.++++.++..+ . |++.+.+..+ ..++.++..+.+||
T Consensus 122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1146)
T PRK08633 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPK 201 (1146)
T ss_pred hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcC
Confidence 44567899999999999999999999999999999888765 2 3344433333 33444455667899
Q ss_pred chHH
Q psy66 69 TPAW 72 (164)
Q Consensus 69 Sp~~ 72 (164)
+|+.
T Consensus 202 ~~~~ 205 (1146)
T PRK08633 202 VPAA 205 (1146)
T ss_pred CCCC
Confidence 8764
No 62
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.39 E-value=0.0019 Score=52.34 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=43.3
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHH----HHHHHh---------HhHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFV----YYAGYM---------LHWQIVCYFCAATACISFIIVTFMPE 68 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~----~~~~~~---------~~Wr~~~~~~~~~~~l~~~~~~~~pE 68 (164)
..++.|+.|+++||...++.+.+..+|..++ +.+... .+||+.+++.+++.++..+..+++++
T Consensus 145 ~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 145 QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4468899999999999998875555555444 433221 27999999988887666555444443
No 63
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.38 E-value=0.0018 Score=51.17 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=52.2
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHH-HHHhhcCCc
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISF-IIVTFMPET 69 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~-~~~~~~pES 69 (164)
...++.|..|+++|++..++......+|..+++.++..+ +||+.+++.++..++.. +..+++||.
T Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 120 RTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 456788999999999999999999999999999888776 99999998877655443 334556763
No 64
>PRK11043 putative transporter; Provisional
Probab=97.37 E-value=0.0017 Score=51.04 Aligned_cols=65 Identities=12% Similarity=0.020 Sum_probs=50.9
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
..++.|..|+++|+...+.......+|..+++.++... +||..+.+..+..++..+..++++|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
T PRK11043 116 QALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK 184 (401)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45678999999998888888777888888888777665 999999988887776666666666654
No 65
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.34 E-value=0.0014 Score=51.42 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=52.3
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETP 70 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp 70 (164)
...++.|..|+++|++..+.......+|.++++.++..+ +||..+.+..+..++..+ ..+++||.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (408)
T PRK09874 127 ANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF 197 (408)
T ss_pred HHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 345678999999999999999999999999998887765 999999888877655544 445567764
No 66
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.29 E-value=0.00087 Score=50.82 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=54.4
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcC
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMP 67 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~p 67 (164)
+....++.|+.|+++|++..+..+....+|..+++.++... +||+.+.+..++.++..+...+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
T cd06174 106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174 (352)
T ss_pred HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999998877 799999988887766655554444
No 67
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.28 E-value=0.0016 Score=52.80 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=54.2
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHH---HHHHHHHHHHHhhcCCchHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFC---AATACISFIIVTFMPETPAWYA 74 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~---~~~~~l~~~~~~~~pESp~~l~ 74 (164)
+...|+..+.|+++|+++.+....+..+|.++++.++..+ +||...-.. ....++.++.-+++|--+|=+.
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~ 210 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLF 210 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhh
Confidence 3456899999999999999999999999999999997767 888755443 3334444566678885555444
No 68
>KOG1330|consensus
Probab=97.17 E-value=2.7e-05 Score=62.07 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=59.8
Q ss_pred CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHH-HhhcCCchH
Q psy66 2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFII-VTFMPETPA 71 (164)
Q Consensus 2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~-~~~~pESp~ 71 (164)
.+++|.+++|..|...|++..+++++...+|..+++..+..+ .|||-+...++.+++..++ .++.+|-.|
T Consensus 139 ~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 139 SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 367899999999999999999999999999999999988877 6999999999887777554 556677543
No 69
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.17 E-value=0.0029 Score=48.58 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=45.7
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh-H---hHHHHHHHHHHHHHHHHHHH-hhcCCch
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM-L---HWQIVCYFCAATACISFIIV-TFMPETP 70 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~-~---~Wr~~~~~~~~~~~l~~~~~-~~~pESp 70 (164)
..++.|+.| ++|++..+....+..+|.++++.+... . +||+.+.+.+++.++..+.. ++++|.|
T Consensus 113 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (377)
T TIGR00890 113 LNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPP 181 (377)
T ss_pred HHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence 345677776 579999999999999998765544433 3 89999999888776665444 4455544
No 70
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.16 E-value=0.0028 Score=49.66 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=52.3
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH-HHHHhhcCCchH
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS-FIIVTFMPETPA 71 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp~ 71 (164)
..+..|..+++.|+...+..+.+..+|.++++.++... +||+.+.+..+..++. ++..+++||+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 118 RTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 44667888999999999999999999998888887665 8999999887765544 344567899864
No 71
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.15 E-value=0.0035 Score=50.35 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=54.6
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh----------HhHHHHHHHHHHHHHHHHHH-HhhcCCchH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM----------LHWQIVCYFCAATACISFII-VTFMPETPA 71 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~----------~~Wr~~~~~~~~~~~l~~~~-~~~~pESp~ 71 (164)
+..++++.|..|++.||...++.+....+|.++++.+... .+|+..+.+.++..++..+. .++.||+.+
T Consensus 383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred chhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence 3456789999999999999999998888888777544321 16777777766655544443 445788742
Q ss_pred HHHhcCCHHHHHHHHHHH
Q psy66 72 WYASKGLVVKSSASLNWL 89 (164)
Q Consensus 72 ~l~~~~~~~~a~~~l~~i 89 (164)
.+.||.++..++.
T Consensus 463 -----~~~~~~~~~~~~~ 475 (479)
T PRK10077 463 -----KTLEEMEALWEPE 475 (479)
T ss_pred -----CCHHHHHHHHhhc
Confidence 2345554444433
No 72
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.15 E-value=0.0011 Score=55.14 Aligned_cols=57 Identities=14% Similarity=0.296 Sum_probs=38.4
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII 62 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~ 62 (164)
...++|+.|.|+|+................++.++... +|||.+++..+...+.++.
T Consensus 152 ~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 152 ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 34579999999998777666554444433444444333 9999999888875555443
No 73
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.10 E-value=0.0015 Score=58.22 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=56.7
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
++...++.|+.|++.|+++.++.+.+.++|.++++.++..+ +|++.++...+..++.++..+++||++
T Consensus 127 p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (1140)
T PRK06814 127 PIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG 198 (1140)
T ss_pred hHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 45667889999999999999999999999999999999887 999998666666666666667777764
No 74
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.05 E-value=0.0094 Score=46.72 Aligned_cols=62 Identities=11% Similarity=-0.042 Sum_probs=47.1
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPE 68 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pE 68 (164)
.+..|..+++.++...+....+..+|.++++...... +||..+++.++..++..+..++++|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 120 GMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred HHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3567888888888888888888888998888765544 9999999888877665555555544
No 75
>PRK03699 putative transporter; Provisional
Probab=97.04 E-value=0.0037 Score=49.19 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=46.9
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~ 63 (164)
....++.|+.|+++|+...+..+....+|..+++.+.... +||+.+.+.+++.++..+..
T Consensus 115 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 115 IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999888888888888887775443 89999998887766554443
No 76
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.01 E-value=0.01 Score=47.20 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=47.3
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------------------------------hHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------------------------------HWQIVCYFC 52 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------------------------------~Wr~~~~~~ 52 (164)
+.+..++.|+.|+++|++..+..+.+.++|..+++.++..+ +||+.+.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~ 192 (410)
T TIGR00885 113 TAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMII 192 (410)
T ss_pred hhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999999999998888876533 499999887
Q ss_pred HHHHHHHHHH
Q psy66 53 AATACISFII 62 (164)
Q Consensus 53 ~~~~~l~~~~ 62 (164)
++..++..+.
T Consensus 193 a~~~~~~~~~ 202 (410)
T TIGR00885 193 GAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHH
Confidence 7765554433
No 77
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.01 E-value=0.00041 Score=55.87 Aligned_cols=69 Identities=16% Similarity=0.079 Sum_probs=52.7
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHH-HHhhcCCchH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-------HWQIVCYFCAATACISFI-IVTFMPETPA 71 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-------~Wr~~~~~~~~~~~l~~~-~~~~~pESp~ 71 (164)
+....++.|+.|+++||++.++.+.+.++|.++++.++... +||..+.+.+++.++..+ ..++.+|+|.
T Consensus 141 ~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~ 217 (467)
T PRK09556 141 PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE 217 (467)
T ss_pred hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence 34557899999999999999999999999999988876433 589888887777655533 3445566664
No 78
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.01 E-value=0.002 Score=51.29 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=52.8
Q ss_pred cchhhhhhccCchhHHHHHhHHH-HHHHHHHHHHHHHHHhH----------hHHHHHHHHHHHHHHHH-HHHhhcCCch
Q psy66 4 STYVYVSEISLPAYRGLFASLGP-VFVSLGVLFVYYAGYML----------HWQIVCYFCAATACISF-IIVTFMPETP 70 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~-~~~~~G~ll~~~~~~~~----------~Wr~~~~~~~~~~~l~~-~~~~~~pESp 70 (164)
....++.|..|++.||+..++.+ ..+++|..+++.+++.+ +|+..+.+.++..++.. +..++++|+.
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 44677899999999999999997 67888999998888765 29999888877765554 4456678873
No 79
>PRK10504 putative transporter; Provisional
Probab=96.93 E-value=0.0037 Score=50.23 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=52.4
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETP 70 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp 70 (164)
....++.|..|+++|+...+.......+|..+++.++..+ +||+.|.+......+..+ .....|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 118 VGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4566789999999999999999999999999999888766 999999887766554443 334456543
No 80
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.91 E-value=0.0034 Score=49.38 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=46.5
Q ss_pred hhhhhhccCchhH--HHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66 6 YVYVSEISLPAYR--GLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETP 70 (164)
Q Consensus 6 ~~~i~E~~p~~~R--g~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp 70 (164)
..++.|..+++.| +...+..+.+.++|.++++.++..+ +||..+++.++..++..+ ...++||+|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 127 FALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 3455676666555 4455777888888888888888766 999999888876655544 445678875
No 81
>PRK10054 putative transporter; Provisional
Probab=96.90 E-value=0.0031 Score=49.80 Aligned_cols=66 Identities=11% Similarity=0.162 Sum_probs=52.4
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHH-HHhhcCCc
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFI-IVTFMPET 69 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~-~~~~~pES 69 (164)
....+..|..|+++|++..++.....++|..+++.++... +||..+.+.++..++..+ ..+++||.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 116 VLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456778999999999999999999999999999988776 899999887776655543 33446665
No 82
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.88 E-value=0.0043 Score=48.80 Aligned_cols=63 Identities=10% Similarity=0.158 Sum_probs=52.2
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPE 68 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pE 68 (164)
.+.+..|..|. .||...++.+....+|..+++.++..+ +|+..+.+..++.++.++..+++||
T Consensus 326 ~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 326 GMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44667899886 599999998888889999999888776 8999999888888888777777776
No 83
>TIGR00898 2A0119 cation transport protein.
Probab=96.85 E-value=0.004 Score=50.47 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=53.1
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--HWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
..+++..|..|++.|+...++.+....+|.+++|.+.... ++...+.+.++.+++..+...++||+.
T Consensus 430 ~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 430 MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 4567889999999999999999999999999999988733 556666666666666666667889964
No 84
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.79 E-value=0.013 Score=46.52 Aligned_cols=64 Identities=22% Similarity=0.197 Sum_probs=46.2
Q ss_pred hhhhhcc-CchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66 7 VYVSEIS-LPAYRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQIVCYFCAATACISFI-IVTFMPETP 70 (164)
Q Consensus 7 ~~i~E~~-p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~~~~~~~~~~~l~~~-~~~~~pESp 70 (164)
.+..|++ ++++|++..+..+.+..+|.++++.+...+ +||+.+.+.++..++..+ ..++++|.+
T Consensus 122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 4567887 578999999998888888877665543221 799998888887666544 445678764
No 85
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.78 E-value=0.0053 Score=50.08 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=42.5
Q ss_pred ccchhhhhhccCch--hHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPA--YRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAA 54 (164)
Q Consensus 3 ~~~~~~i~E~~p~~--~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~ 54 (164)
+....++.|..|++ +|+...+....++++|..+++.++.++ +||+.|++..+
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 45678899999877 457778888999999998888887766 99999988654
No 86
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=96.70 E-value=0.0063 Score=46.09 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=54.0
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhh
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTF 65 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~ 65 (164)
+....++.|..|+++|++..++.+....+|..+++.+.... +|+..+.+.++..++..+...+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred hhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 45567889999999999999999999999999999998776 8999999988887777665543
No 87
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=96.69 E-value=0.0084 Score=47.01 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=48.4
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPE 68 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pE 68 (164)
..+.|..|++.||+..++.+....+|..+++.+.... +|+..+.+.++..++..+..+++++
T Consensus 325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 325 VEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567889999999999999999999987777665555 8999988888777666655554444
No 88
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=96.67 E-value=0.0039 Score=49.33 Aligned_cols=67 Identities=25% Similarity=0.194 Sum_probs=52.9
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH-hhcCCch
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV-TFMPETP 70 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~-~~~pESp 70 (164)
...+++.|..|++.||...++.+....+|.++++.+.... +|++.+++.++.+++..+.. ++.||++
T Consensus 403 ~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 403 VPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred eehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 3456679999999999999999999999999999887665 79988887777766555444 4567754
No 89
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.56 E-value=0.034 Score=42.91 Aligned_cols=52 Identities=21% Similarity=0.135 Sum_probs=39.8
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------hHHHHHHHHHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------HWQIVCYFCAATA 56 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------~Wr~~~~~~~~~~ 56 (164)
..+.++.|..| ++|++..+..+.+..+|..+++.+...+ +||+.+.+..+..
T Consensus 107 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~ 164 (355)
T TIGR00896 107 LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPA 164 (355)
T ss_pred cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44567788876 6899999999999999998888776554 3998887665543
No 90
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.55 E-value=0.011 Score=45.24 Aligned_cols=68 Identities=21% Similarity=0.145 Sum_probs=51.7
Q ss_pred CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--------------------hHHHHHHHHHHHHHHHHH
Q psy66 2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--------------------HWQIVCYFCAATACISFI 61 (164)
Q Consensus 2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--------------------~Wr~~~~~~~~~~~l~~~ 61 (164)
.+++..|+.++.|++.+.+.+++.+.++++|.+++|+++... +|++++.+.+...++..+
T Consensus 28 q~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i 107 (310)
T TIGR01272 28 QVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAI 107 (310)
T ss_pred HhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999998732 588888855544333333
Q ss_pred HH--hhcCCc
Q psy66 62 IV--TFMPET 69 (164)
Q Consensus 62 ~~--~~~pES 69 (164)
.. .-+||.
T Consensus 108 ~~~~~~~p~~ 117 (310)
T TIGR01272 108 IFAFLPLPEL 117 (310)
T ss_pred HHHHccCCCC
Confidence 33 235764
No 91
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=96.47 E-value=0.0091 Score=48.63 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=48.1
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-h-------------HHHHHHHHHHHHHHHHHHHhhcCCc
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-H-------------WQIVCYFCAATACISFIIVTFMPET 69 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-~-------------Wr~~~~~~~~~~~l~~~~~~~~pES 69 (164)
....+..|+.|++.|++..++.+....+|.++++.+.... + +...+.+-++..++..+..+++||+
T Consensus 412 ~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt 491 (502)
T TIGR00887 412 TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPET 491 (502)
T ss_pred hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccC
Confidence 3456789999999999999999999999998888776544 2 2344454444444444455678997
Q ss_pred h
Q psy66 70 P 70 (164)
Q Consensus 70 p 70 (164)
.
T Consensus 492 ~ 492 (502)
T TIGR00887 492 K 492 (502)
T ss_pred C
Confidence 4
No 92
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=96.47 E-value=0.053 Score=43.16 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=46.3
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHh----Hh---HHHHHHHHHHHHHHHHHHH-hhcCCch
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYM----LH---WQIVCYFCAATACISFIIV-TFMPETP 70 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~----~~---Wr~~~~~~~~~~~l~~~~~-~~~pESp 70 (164)
+++..+++++.||+.+|.+.++.. .-++|..+...++-. .+ ||....+-.++..+..+.. +.+-|.|
T Consensus 123 av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p 197 (417)
T COG2223 123 AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVP 197 (417)
T ss_pred hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 566778999999999999999888 666666555555443 36 8888777777666554444 3344433
No 93
>TIGR00893 2A0114 d-galactonate transporter.
Probab=96.36 E-value=0.013 Score=45.04 Aligned_cols=61 Identities=16% Similarity=0.051 Sum_probs=49.9
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h-HHHHHHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H-WQIVCYFCAATACISFIIV 63 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~-Wr~~~~~~~~~~~l~~~~~ 63 (164)
+....++.|..|++.||...++.+....+|..+++.+.... + |+..+.+.++..++..+..
T Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 330 AIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred hHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999888776 5 9988887777665554443
No 94
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=96.34 E-value=0.025 Score=44.30 Aligned_cols=47 Identities=13% Similarity=-0.166 Sum_probs=35.8
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHH
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAAT 55 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~ 55 (164)
.+..|. +++|++..+......++|.++++.++..+ +||..+.+..+.
T Consensus 117 al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 117 ALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred HHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 344443 56788888888888889999998877666 999998876654
No 95
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.28 E-value=0.011 Score=47.52 Aligned_cols=57 Identities=9% Similarity=-0.051 Sum_probs=45.1
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~ 63 (164)
..++.|+.+ ++|++..++.+.+..+|..+++.++..+ +||+.|++.++..++..+..
T Consensus 130 ~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~ 190 (455)
T TIGR00892 130 LTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCG 190 (455)
T ss_pred HHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 345678875 7899999999999999998888877655 99999999888765544433
No 96
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=96.24 E-value=0.028 Score=45.11 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=41.9
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHHHHH-HHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSLGVL-FVYYAGYML----HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~l-l~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~ 63 (164)
++..|..|++.||...++.+....+|.. +++.+.... +|+..+.+....+++..+..
T Consensus 370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~ 431 (452)
T PRK11273 370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 431 (452)
T ss_pred HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999877777654 466665544 89998887777665554443
No 97
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=96.23 E-value=0.012 Score=45.11 Aligned_cols=56 Identities=16% Similarity=-0.043 Sum_probs=47.3
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS 59 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~ 59 (164)
..+.++.|..|+++||+..++.+....+|..+++.+.... +|+..+.+.++..++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 4466889999999999999999999999999999887766 8999888877665543
No 98
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=96.20 E-value=0.015 Score=45.65 Aligned_cols=64 Identities=11% Similarity=-0.045 Sum_probs=48.7
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFMPE 68 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~pE 68 (164)
.+.++.|..|++.||+..++.+....+|..+++.+...+ +|...+.......++..+..+++.+
T Consensus 329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999999999999999998776 5666666665555555555544433
No 99
>PRK12382 putative transporter; Provisional
Probab=96.14 E-value=0.026 Score=44.18 Aligned_cols=59 Identities=19% Similarity=0.039 Sum_probs=48.3
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~ 63 (164)
....+.|..|+++||+..++.+....+|..+++.+.... +|+..+.+.++..++..+..
T Consensus 323 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 385 (392)
T PRK12382 323 LGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT 385 (392)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999999887766 89999988887766654443
No 100
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.09 E-value=0.0038 Score=50.29 Aligned_cols=57 Identities=9% Similarity=-0.011 Sum_probs=47.4
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISF 60 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~ 60 (164)
..+.++.|..|++++|...++.+....+|.++++.++..+ +|+..+.+.++..++..
T Consensus 353 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 353 LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG 414 (455)
T ss_pred HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence 3456778999999999999999999999999999998766 59988888877655443
No 101
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.96 E-value=0.0095 Score=47.23 Aligned_cols=62 Identities=13% Similarity=0.027 Sum_probs=43.6
Q ss_pred hhhhhhccCchhHHHHHhH-HHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH-HHHhhcC
Q psy66 6 YVYVSEISLPAYRGLFASL-GPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF-IIVTFMP 67 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~-~~~~~~p 67 (164)
..++.|..|++.|+...+. .+....+|..+++.+.+.+ |||..+.+.++..++.. +....++
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567888999999876544 5667778888888887666 89999887766654443 3333443
No 102
>KOG3626|consensus
Probab=95.92 E-value=0.13 Score=44.04 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=52.5
Q ss_pred CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------------------hHHHHHHHHHHHHHH
Q psy66 2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----------------------HWQIVCYFCAATACI 58 (164)
Q Consensus 2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------------------~Wr~~~~~~~~~~~l 58 (164)
.+....|+=|.+-+++-....++......+|..+|.+++..+ .|..-|++.+...++
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 355677888999999999999999999999999999998766 566666666666666
Q ss_pred HHHHHhhcCCch
Q psy66 59 SFIIVTFMPETP 70 (164)
Q Consensus 59 ~~~~~~~~pESp 70 (164)
..+..+++|...
T Consensus 335 ~a~p~f~fPk~l 346 (735)
T KOG3626|consen 335 SAVPLFFFPKEL 346 (735)
T ss_pred HHHHHHhCcccC
Confidence 555566666653
No 103
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=95.92 E-value=0.019 Score=44.98 Aligned_cols=60 Identities=12% Similarity=-0.013 Sum_probs=39.8
Q ss_pred hhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy66 8 YVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPET 69 (164)
Q Consensus 8 ~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pES 69 (164)
++.++ .+.|++..+....+.++|..+++.++..+ +||..+++.++..++..+...+.||.
T Consensus 118 ~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 181 (382)
T PRK11128 118 LANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTI 181 (382)
T ss_pred HHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence 44454 34566666667777778888888887766 99999887776544444444456764
No 104
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=95.89 E-value=0.04 Score=44.94 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=49.3
Q ss_pred chhhhhhccCchhH--HHHHhHHHHHHHHHHHHHHHHHHhH-------------------hHHHHHHHHHHHHHHH-HHH
Q psy66 5 TYVYVSEISLPAYR--GLFASLGPVFVSLGVLFVYYAGYML-------------------HWQIVCYFCAATACIS-FII 62 (164)
Q Consensus 5 ~~~~i~E~~p~~~R--g~~~~~~~~~~~~G~ll~~~~~~~~-------------------~Wr~~~~~~~~~~~l~-~~~ 62 (164)
..+++.|.+|++.| +...+..+.+..+|.++++.++... +-|..|.+.++..++. ++.
T Consensus 135 ~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t 214 (477)
T TIGR01301 135 CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIA 214 (477)
T ss_pred HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 34678999998865 5788888888899999998887653 3466777777765554 445
Q ss_pred HhhcCCchH
Q psy66 63 VTFMPETPA 71 (164)
Q Consensus 63 ~~~~pESp~ 71 (164)
.++.+|.|.
T Consensus 215 ~~~v~E~~~ 223 (477)
T TIGR01301 215 LSAVKENPL 223 (477)
T ss_pred eeeeeccCC
Confidence 567899763
No 105
>PF13347 MFS_2: MFS/sugar transport protein
Probab=95.88 E-value=0.063 Score=42.74 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=45.5
Q ss_pred hhhhhhccC-chhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHHHH-HHhhcCC
Q psy66 6 YVYVSEISL-PAYRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQIVCYFCAATACISFI-IVTFMPE 68 (164)
Q Consensus 6 ~~~i~E~~p-~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~~~~~~~~~~~l~~~-~~~~~pE 68 (164)
..+..|+++ +++|.+..+.-+.+..+|.++...+...+ +|++...+.++..++..+ ..+..+|
T Consensus 125 ~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 125 NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 346789987 57999999999888888887555554433 599988888777666544 4455677
No 106
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=95.79 E-value=0.092 Score=41.41 Aligned_cols=38 Identities=16% Similarity=0.050 Sum_probs=31.2
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHH-HHHHHHHHhH
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGV-LFVYYAGYML 43 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~-ll~~~~~~~~ 43 (164)
..++.|..|+++||+..++.+.+.++|. ++++.++...
T Consensus 127 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l 165 (402)
T TIGR00897 127 LVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA 165 (402)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567789999999999999999999996 5777776543
No 107
>PRK09952 shikimate transporter; Provisional
Probab=95.71 E-value=0.047 Score=43.70 Aligned_cols=66 Identities=23% Similarity=0.263 Sum_probs=47.4
Q ss_pred cchhhhhhccCchhHHHHHhHH-HHHHHHHHHHHHHHHHhH------hHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy66 4 STYVYVSEISLPAYRGLFASLG-PVFVSLGVLFVYYAGYML------HWQIVCYFCAATACISFIIVTFMPET 69 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~-~~~~~~G~ll~~~~~~~~------~Wr~~~~~~~~~~~l~~~~~~~~pES 69 (164)
..+.++.|..|++.|+...++. +.+..+|..++|.+...+ +|+..+....+..++..+..+.++|+
T Consensus 363 ~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 363 VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 3466889999999998777764 444557777777776655 48888877777777666666666764
No 108
>PRK03633 putative MFS family transporter protein; Provisional
Probab=95.70 E-value=0.053 Score=42.40 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=47.5
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHh
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVT 64 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~ 64 (164)
....++.|..|++.++...+.....+.+|.++++.+++.+ +|++.+.+.+...++..+..+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 305 VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 3455678889998888888888888999999999988877 788888887777665554443
No 109
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=95.68 E-value=0.046 Score=42.16 Aligned_cols=63 Identities=13% Similarity=0.247 Sum_probs=48.6
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPE 68 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pE 68 (164)
...++.|..|.+ |+...++.+....+|..+++.++... +|+..+.+.++..++..+...+++|
T Consensus 309 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 309 GMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence 445678888765 56888888888889999998887766 8999998888877776666655544
No 110
>PRK10489 enterobactin exporter EntS; Provisional
Probab=95.66 E-value=0.042 Score=43.45 Aligned_cols=65 Identities=11% Similarity=-0.076 Sum_probs=47.8
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHH-HHHHHhhcCCch
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACI-SFIIVTFMPETP 70 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l-~~~~~~~~pESp 70 (164)
..++.|..|++.||+..++......+|..+++.+...+ +.+..+...+...++ ..+....+||.+
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 334 YTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 45788999999999999999998999999999888777 666666655544333 344445556643
No 111
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=95.65 E-value=0.055 Score=42.64 Aligned_cols=57 Identities=12% Similarity=-0.023 Sum_probs=41.3
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISF 60 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~ 60 (164)
+..+.++.|+.| ++|+++.+....+...|..+++.++... +||..+.+..++.++.+
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 116 AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 345667788886 7899999998888777777777766543 79998766555544443
No 112
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=95.63 E-value=0.039 Score=44.85 Aligned_cols=57 Identities=11% Similarity=0.048 Sum_probs=45.2
Q ss_pred ccchhhhhhccCchh---HHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAY---RGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS 59 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~---Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~ 59 (164)
+....+++|..|++. |+...++.+...++|.++++.++..+ +||+.|.+.++..++.
T Consensus 121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 455678889988754 88888999999999999999988776 8999998877544433
No 113
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=95.56 E-value=0.063 Score=43.96 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=42.4
Q ss_pred ccchhhhhhccCchh--HHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAY--RGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACI 58 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~--Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l 58 (164)
+....++.|+.|++. |+...++.+.+.++|..+++.++.++ +||+.|.+..+..++
T Consensus 131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 344578899987643 44566778889999999999888777 899999987764433
No 114
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.51 E-value=0.0036 Score=51.70 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
.+....|+=|.++++.-+...++......+|..+|.+++...
T Consensus 159 ~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~ 200 (539)
T PF03137_consen 159 YTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFC 200 (539)
T ss_dssp ------------------------------------------
T ss_pred ccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHH
Confidence 456678999999999999999999999999999998888654
No 115
>KOG0569|consensus
Probab=95.46 E-value=0.17 Score=41.45 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=47.8
Q ss_pred CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--hHH-HHHHHHHHHHHHHHH-HHhhcCCc
Q psy66 2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--HWQ-IVCYFCAATACISFI-IVTFMPET 69 (164)
Q Consensus 2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--~Wr-~~~~~~~~~~~l~~~-~~~~~pES 69 (164)
.++.+.+.+|++|++.|..+.+.......++.++....-..+ .|- ..++.-.+|.++..+ ++.++|||
T Consensus 386 gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPET 457 (485)
T KOG0569|consen 386 GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPET 457 (485)
T ss_pred CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCccc
Confidence 455667889999999999999988888777776665554444 222 555555666555544 45679998
No 116
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=95.40 E-value=0.072 Score=43.25 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=48.0
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHH-HHHHHHHHHHHHHHHHhhcCC
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQI-VCYFCAATACISFIIVTFMPE 68 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~-~~~~~~~~~~l~~~~~~~~pE 68 (164)
...+++.+.+|++.+|...++.+...++|.++++.++..+ +.++ ...++.++.++.+++.+.+|+
T Consensus 371 ~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 371 PFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred cHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3467889999999999999999999999999999887766 2223 223344445555555667887
No 117
>PRK03893 putative sialic acid transporter; Provisional
Probab=95.33 E-value=0.01 Score=47.92 Aligned_cols=50 Identities=8% Similarity=-0.121 Sum_probs=41.6
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCA 53 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~ 53 (164)
..+.++.|..|++.||...++.+....+|..+++.++..+ +|+..+....
T Consensus 386 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~ 439 (496)
T PRK03893 386 LLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLS 439 (496)
T ss_pred hhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 4566889999999999999999999999999999988776 7887665444
No 118
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=95.27 E-value=0.077 Score=43.12 Aligned_cols=58 Identities=10% Similarity=-0.050 Sum_probs=46.5
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF 60 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~ 60 (164)
+....++.|.+|++.||++.++..+...+|..+++.++... +|...+...++..++..
T Consensus 400 p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (475)
T TIGR00924 400 PLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVG 461 (475)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999998887655 67777766665544443
No 119
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=95.26 E-value=0.06 Score=44.14 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=43.9
Q ss_pred cchhhhhhccCch--hHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHH
Q psy66 4 STYVYVSEISLPA--YRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATA 56 (164)
Q Consensus 4 ~~~~~i~E~~p~~--~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~ 56 (164)
..+.+++|..|++ +|+...++.....++|..+++.+...+ +||+.|.++++..
T Consensus 120 ~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm 178 (493)
T PRK15462 120 NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGM 178 (493)
T ss_pred cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 4467899999875 788888888888889999999998777 8999998876543
No 120
>PRK10133 L-fucose transporter; Provisional
Probab=95.20 E-value=0.14 Score=41.22 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=30.6
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAG 40 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~ 40 (164)
+....++.|+.|+++|+...+..+.++.+|..+++.++
T Consensus 136 ~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred hhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888887788889999999998888774
No 121
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=95.18 E-value=0.51 Score=38.48 Aligned_cols=33 Identities=21% Similarity=0.105 Sum_probs=24.5
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFV 36 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~ 36 (164)
.....++++.|+++||++.++.....++|..++
T Consensus 147 ~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~ 179 (462)
T PRK15034 147 SSMGNISFFFPKAKQGSALGINGGLGNLGVSVM 179 (462)
T ss_pred HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHH
Confidence 455678999999999999999865555555433
No 122
>PRK11663 regulatory protein UhpC; Provisional
Probab=95.02 E-value=0.076 Score=42.41 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=46.9
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~ 63 (164)
.++.|..|++.||...++.+....+|..++|.+...+ +|+..+.+.++..++..+..
T Consensus 360 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~ 420 (434)
T PRK11663 360 MAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLL 420 (434)
T ss_pred HHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999998887766 89998887777765554433
No 123
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=94.99 E-value=0.17 Score=40.23 Aligned_cols=51 Identities=8% Similarity=0.045 Sum_probs=40.2
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAAT 55 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~ 55 (164)
...++.|.+|+++|++..++.-++..+|.+++.++.... .=|....+..+.
T Consensus 110 ~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a 165 (403)
T PF03209_consen 110 FLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVA 165 (403)
T ss_pred HHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHH
Confidence 345789999999999999999999999999999988766 334444444443
No 124
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=94.88 E-value=0.036 Score=43.41 Aligned_cols=58 Identities=14% Similarity=0.089 Sum_probs=47.8
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~ 63 (164)
..++.+..|+++||+..+..+....+|..+++.++..+ +|+..+.+.++..++..+..
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 394 (408)
T PRK09874 333 QTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS 394 (408)
T ss_pred HHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 44567888999999999999999999999999998766 89999998887766655444
No 125
>PRK03633 putative MFS family transporter protein; Provisional
Probab=94.88 E-value=0.65 Score=36.27 Aligned_cols=37 Identities=11% Similarity=-0.039 Sum_probs=32.6
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
..+.+..++++|++..+..+.+..+|..+++.++...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 117 SALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567888999999999999999999999999988766
No 126
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=94.74 E-value=0.21 Score=39.25 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhh-cCCch
Q psy66 23 SLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTF-MPETP 70 (164)
Q Consensus 23 ~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~-~pESp 70 (164)
+......++|..+++.++... +||..|.+.++..++..+..+. .||+|
T Consensus 136 g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (396)
T TIGR00882 136 GKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAP 187 (396)
T ss_pred chhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 344444556666666665544 9999999888776665544443 45543
No 127
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=94.54 E-value=0.61 Score=37.26 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=37.4
Q ss_pred CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
.+++..|+..+.+++.-...+++.|.+.++|.+++|+++..+
T Consensus 122 etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~l 163 (422)
T COG0738 122 ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163 (422)
T ss_pred HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 467788999999998888899999999999999999998765
No 128
>PRK12307 putative sialic acid transporter; Provisional
Probab=94.47 E-value=0.15 Score=40.20 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=34.6
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
..+.++.|..|++.||+..++......+|..+++.+...+
T Consensus 341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 341 LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 3466789999999999999998888888999998887766
No 129
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=94.45 E-value=0.19 Score=40.04 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=45.2
Q ss_pred ccchhhhhhccCchhHHHHHhHHHH-HHHHHHHHHHHHHHhH----------hHHHHHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPV-FVSLGVLFVYYAGYML----------HWQIVCYFCAATACISFII 62 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~-~~~~G~ll~~~~~~~~----------~Wr~~~~~~~~~~~l~~~~ 62 (164)
+++..|+.|.+|++.|+...+++.. ..++|..++..+++.+ +|..++.+.++..++..+.
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~ 390 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL 390 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999997765 4678999999888877 5666776666665444433
No 130
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=94.45 E-value=0.046 Score=44.37 Aligned_cols=66 Identities=18% Similarity=0.029 Sum_probs=45.4
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHH---HHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFV---SLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~---~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
.+-.+..|..+ +.++...+.....| .+|.++++.+++.+ +||..+.+.++..++..+...++||.+
T Consensus 140 ~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~ 212 (468)
T TIGR00788 140 LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERR 212 (468)
T ss_pred hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence 34557788888 55544433443333 47888888887766 899999888877666666667788863
No 131
>PRK11010 ampG muropeptide transporter; Validated
Probab=94.22 E-value=0.16 Score=41.53 Aligned_cols=65 Identities=12% Similarity=0.206 Sum_probs=51.1
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPET 69 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pES 69 (164)
...+..+.++++.++...++.+....+|.++++.+++.+ ||+..|.+..+.+++.++...+++++
T Consensus 337 ~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 337 FVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355678999999999999999998999987776666555 89999988888877776666555554
No 132
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=94.09 E-value=0.31 Score=39.33 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=38.5
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHH-HHHHHHHHHHhH----------------hHHHHHHHHHHHHHHHHHH
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSL-GVLFVYYAGYML----------------HWQIVCYFCAATACISFII 62 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~-G~ll~~~~~~~~----------------~Wr~~~~~~~~~~~l~~~~ 62 (164)
.+..|..|++.||.+.++.+....+ |..+++.+.+.+ +|+..+.+..+..++..+.
T Consensus 372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 444 (467)
T PRK09556 372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICL 444 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999877665 645554444333 4888887765555544333
No 133
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=94.08 E-value=0.14 Score=40.58 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=35.7
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
....++.|.+|++.||+..++.+....+|..+++.++...
T Consensus 317 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l 356 (400)
T PRK11646 317 ARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL 356 (400)
T ss_pred cHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence 4456788999999999999999999999999999988877
No 134
>PRK09528 lacY galactoside permease; Reviewed
Probab=93.61 E-value=0.43 Score=37.79 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=34.9
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhhc
Q psy66 16 AYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTFM 66 (164)
Q Consensus 16 ~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~~ 66 (164)
+.||...+.......+|..+++.++..+ +|+..+++.++..++..+..+++
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred hhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcc
Confidence 3455555566666677777777776655 89999998888776665555443
No 135
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=93.58 E-value=0.42 Score=37.66 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=45.4
Q ss_pred hhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhc
Q psy66 8 YVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFM 66 (164)
Q Consensus 8 ~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~ 66 (164)
.+.|.. +++||...++.+....+|..++|.++..+ +|+..+++.++..++......|+
T Consensus 339 ~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 339 VFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 445654 56899999999999999999999888766 88888888887776665555443
No 136
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=93.36 E-value=0.21 Score=39.83 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=38.2
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHH--HHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcC
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSL--GVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMP 67 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~--G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~p 67 (164)
.+.++.|+.|++.|+...++.+..... |.. .+.+.... .|...++...+..++..+..++++
T Consensus 357 ~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~-~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~ 424 (432)
T PRK10406 357 SGILKAEMFPAQVRALGVGLSYAVANALFGGS-AEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLH 424 (432)
T ss_pred HHHHHHHHCCCCccchhhhHHHHHHHHHHHhH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 356788999999999999987644332 333 55544444 355555555555555555544443
No 137
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=93.32 E-value=0.33 Score=39.78 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=32.8
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGY 41 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~ 41 (164)
++...++.+.+|++.||+.++++.+...+|..++..+..
T Consensus 401 p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 401 GLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999888888888777663
No 138
>PRK11462 putative transporter; Provisional
Probab=93.26 E-value=1.1 Score=36.30 Aligned_cols=62 Identities=16% Similarity=0.024 Sum_probs=42.2
Q ss_pred hhhhhccC-chhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHHHHH-HhhcCC
Q psy66 7 VYVSEISL-PAYRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQIVCYFCAATACISFII-VTFMPE 68 (164)
Q Consensus 7 ~~i~E~~p-~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~~~~~~~~~~~l~~~~-~~~~pE 68 (164)
.+..|+++ +++|.+..+.-..+..+|.++++.+.... +|+....+.+++.++.... ....+|
T Consensus 132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE 206 (460)
T PRK11462 132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE 206 (460)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence 35678885 99999999999988888887776664332 5777666666665444433 333455
No 139
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=93.21 E-value=0.38 Score=38.55 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=52.2
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------hHHHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------HWQIVCYFCAATACISFIIVTFMPETPAWYA 74 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~ 74 (164)
-+.|+.-..|+++-.++.+..-....+|.+++.+++-.+ +.+.+..+......+.++..+++|-.++=+.
T Consensus 114 y~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~ 189 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLF 189 (412)
T ss_pred HHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Confidence 346777788999999999888888888888888777655 6777777777666666677777887665443
No 140
>PRK09669 putative symporter YagG; Provisional
Probab=93.18 E-value=0.83 Score=36.55 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=39.4
Q ss_pred hhhhhcc-CchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHHHHH-HhhcCC
Q psy66 7 VYVSEIS-LPAYRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQIVCYFCAATACISFII-VTFMPE 68 (164)
Q Consensus 7 ~~i~E~~-p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~~~~~~~~~~~l~~~~-~~~~pE 68 (164)
.+..|++ ++++|++..+.-..+..+|..+++.+...+ +|+....+.++...+..+. .+..+|
T Consensus 132 al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e 206 (444)
T PRK09669 132 AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKE 206 (444)
T ss_pred HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 3567887 668899888877777777766665543221 6887777666665444433 333444
No 141
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=93.06 E-value=0.15 Score=39.61 Aligned_cols=48 Identities=13% Similarity=-0.045 Sum_probs=39.5
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h-HHHHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H-WQIVCYF 51 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~-Wr~~~~~ 51 (164)
..+.++.|..|++.||+..++.+....+|..+++.+...+ + |+..+..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 348 ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 4567889999999999999999999999999999988777 4 6554443
No 142
>PRK03545 putative arabinose transporter; Provisional
Probab=93.05 E-value=0.55 Score=36.77 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=44.4
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~ 63 (164)
..++.|..| +.||+..++......+|..+++.++... +++..+.+..+..++..+..
T Consensus 316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (390)
T PRK03545 316 QVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS 376 (390)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence 445667766 6889988988888888888888887776 89999988887776665554
No 143
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=92.92 E-value=0.13 Score=41.18 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=43.9
Q ss_pred hhhhccCchhHHHHHhHHHHHHHHH-HHHHHHHHHhH----hHHHHHHHHHHHHHHH-HHHHhhcCCch
Q psy66 8 YVSEISLPAYRGLFASLGPVFVSLG-VLFVYYAGYML----HWQIVCYFCAATACIS-FIIVTFMPETP 70 (164)
Q Consensus 8 ~i~E~~p~~~Rg~~~~~~~~~~~~G-~ll~~~~~~~~----~Wr~~~~~~~~~~~l~-~~~~~~~pESp 70 (164)
...|..|++.||...++.+.....| .++++.+...+ +|...+.+.....++. ......+||..
T Consensus 369 ~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 369 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4679999999999999988766655 56777776555 7888777666554444 33445567753
No 144
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=92.73 E-value=0.31 Score=38.30 Aligned_cols=60 Identities=13% Similarity=0.049 Sum_probs=43.8
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHh
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--HWQIVCYFCAATACISFIIVT 64 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--~Wr~~~~~~~~~~~l~~~~~~ 64 (164)
...+..|..|++.||+..++.+....+|...++.+.... +-+..|.+.+++.++..+...
T Consensus 301 ~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 301 IMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999998888887777766544 555556655666555544443
No 145
>KOG2816|consensus
Probab=92.46 E-value=0.59 Score=38.14 Aligned_cols=68 Identities=25% Similarity=0.303 Sum_probs=54.7
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH-HhhcCCch
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII-VTFMPETP 70 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~-~~~~pESp 70 (164)
+.+..|+++++..+.|....++....+..|..+++.++... +--..+.+..+..++..++ ..++|||-
T Consensus 131 s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 131 SVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred hhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 45677899999999999999999999999999999988877 5556777777776666554 46689973
No 146
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=92.31 E-value=0.58 Score=36.62 Aligned_cols=54 Identities=11% Similarity=-0.044 Sum_probs=42.7
Q ss_pred hhhhccCc-hhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH
Q psy66 8 YVSEISLP-AYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI 61 (164)
Q Consensus 8 ~i~E~~p~-~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~ 61 (164)
++.+.+++ +.+|...++.+....+|..+++.+++.. +|+..+.+.++..++..+
T Consensus 327 ~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 327 AFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 44566665 8999999999999999999999998877 788888877766555433
No 147
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=92.26 E-value=0.012 Score=46.92 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=45.3
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h-HHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H-WQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~-Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
...++..|..|.+.|+...++......+|.++++.+.... + +-.......+..+...+...++|||.
T Consensus 369 ~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 369 LPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence 3447789999999999999988877777777776665444 2 33344444444444445567899983
No 148
>KOG3764|consensus
Probab=92.24 E-value=0.091 Score=41.92 Aligned_cols=63 Identities=19% Similarity=0.145 Sum_probs=53.5
Q ss_pred cchhhhhhccCchh-HHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhc
Q psy66 4 STYVYVSEISLPAY-RGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFM 66 (164)
Q Consensus 4 ~~~~~i~E~~p~~~-Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~ 66 (164)
+...++++..|.+. ||.+++..-.+.++|.+++|.+++.+ |.+..|++.++..++-..+.+++
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 44556777776665 79999999999999999999999887 99999999999888887777665
No 149
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=91.94 E-value=0.84 Score=37.85 Aligned_cols=52 Identities=13% Similarity=-0.072 Sum_probs=40.4
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATA 56 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~ 56 (164)
..+.+.+.+|++.||+..+++++....|..++.++.+.+ +-+..+.++++..
T Consensus 328 ~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~l 383 (524)
T PF05977_consen 328 LNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAAL 383 (524)
T ss_pred HHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 345678999999999999999988888888888877766 6666666555543
No 150
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=91.74 E-value=1.8 Score=35.44 Aligned_cols=57 Identities=26% Similarity=0.206 Sum_probs=42.4
Q ss_pred hhhhcc-CchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHHHHHHh
Q psy66 8 YVSEIS-LPAYRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQIVCYFCAATACISFIIVT 64 (164)
Q Consensus 8 ~i~E~~-p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~~~~~~~~~~~l~~~~~~ 64 (164)
+..|++ .+++|.+..+.-+.+..+|.++...+...+ +|+..-.+-++.+++.++.++
T Consensus 136 l~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~ 204 (467)
T COG2211 136 LGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCF 204 (467)
T ss_pred cchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 456775 789999999999999999987777666544 788777777776666655443
No 151
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=91.56 E-value=0.15 Score=39.24 Aligned_cols=52 Identities=23% Similarity=0.171 Sum_probs=38.5
Q ss_pred cchhhhhhccCchhHHHHHhH-HHHHHHHHHHHHHHHHHhH----h-HHHHHHHHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASL-GPVFVSLGVLFVYYAGYML----H-WQIVCYFCAAT 55 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~ll~~~~~~~~----~-Wr~~~~~~~~~ 55 (164)
....++.|..|++.|++..++ .+....+|..++|.++..+ + |+...+...+.
T Consensus 332 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 332 PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 456678999999999998886 4566677887888877665 4 88776655544
No 152
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=91.20 E-value=1.2 Score=35.16 Aligned_cols=63 Identities=16% Similarity=0.098 Sum_probs=46.0
Q ss_pred hhhhcc-CchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHH-HHHHhhcCCch
Q psy66 8 YVSEIS-LPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACIS-FIIVTFMPETP 70 (164)
Q Consensus 8 ~i~E~~-p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~-~~~~~~~pESp 70 (164)
...+.. |++.||+..++.+....+|..+++.+..++ +|...+.+..+..++. .+...+.||++
T Consensus 316 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 316 LALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 445555 568899999998888888888888887777 5778777776665444 34456778875
No 153
>PRK10504 putative transporter; Provisional
Probab=91.19 E-value=0.75 Score=36.95 Aligned_cols=39 Identities=10% Similarity=-0.101 Sum_probs=33.0
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
...++.+..|++.||...++.+....+|..+++.++...
T Consensus 374 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 374 MNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999998888887665
No 154
>KOG0255|consensus
Probab=91.10 E-value=1.1 Score=36.60 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=49.5
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH--hHHHHHH--HHHHHHHHHHHHHhhcCCchH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML--HWQIVCY--FCAATACISFIIVTFMPETPA 71 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~--~Wr~~~~--~~~~~~~l~~~~~~~~pESp~ 71 (164)
...+..|..|...|+...+.......+|.++++.+.... .+..+.. .+.+..+..++...++||+..
T Consensus 427 ~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~ 497 (521)
T KOG0255|consen 427 IFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKG 497 (521)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence 366789999999999999999999999999999998766 2222222 233444444555588999853
No 155
>KOG0252|consensus
Probab=90.80 E-value=0.26 Score=40.11 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=53.3
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---------hHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---------HWQIVCYFCAATACISFIIVTFMPETPA 71 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---------~Wr~~~~~~~~~~~l~~~~~~~~pESp~ 71 (164)
+..++-+|++|.+.||..-++.....=.|.+++...-.+. +-|..+++.....++-.+..+++|||.+
T Consensus 426 ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 426 TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 3455678999999999999888888888888777665444 6778888877777777777788999853
No 156
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=90.50 E-value=1.1 Score=36.18 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=47.8
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------------hHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------------HWQIVCYFCAATACISFIIVTFMPETPA 71 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------------~Wr~~~~~~~~~~~l~~~~~~~~pESp~ 71 (164)
+.++|++|+..-|..-++.....++|..++..++..+ +--+..+++.+..++.+++..++|+..+
T Consensus 341 vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 341 VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 4689999999999999999988899888888887766 1223444455555666666777888654
No 157
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=89.84 E-value=1 Score=35.48 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=33.2
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHh
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVT 64 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~ 64 (164)
..++.+..|.+.++...+. .++|.++++.++..+ ||+.++.+.++.+++.++..+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~ 387 (402)
T PRK11902 329 MALCNRSFSATQYALLSAL----ASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW 387 (402)
T ss_pred HHhcCCCCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 3456666676666543333 344444333344433 999999998888777655553
No 158
>PRK10429 melibiose:sodium symporter; Provisional
Probab=89.66 E-value=4 Score=33.04 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=38.6
Q ss_pred hhhhhcc-CchhHHHHHhHHHHHHHHHHHHHHHHHHh----H-------hHHHHHHHHHHHHHHHH-HHHhhcCCc
Q psy66 7 VYVSEIS-LPAYRGLFASLGPVFVSLGVLFVYYAGYM----L-------HWQIVCYFCAATACISF-IIVTFMPET 69 (164)
Q Consensus 7 ~~i~E~~-p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~----~-------~Wr~~~~~~~~~~~l~~-~~~~~~pES 69 (164)
.++.|++ ++++|.+..+.-..+..+|.++.+.+... . +|+....+.++..++.. +..+..+|-
T Consensus 129 al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 129 SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 4568998 69999998887666666665444433321 1 57776666666544433 333446664
No 159
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=89.19 E-value=0.62 Score=35.03 Aligned_cols=49 Identities=14% Similarity=0.292 Sum_probs=34.3
Q ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHhH---------hHHHHHHHHHHHHHHHHHHHh
Q psy66 16 AYRGLFASLGPVFVSLGVLFVYYAGYML---------HWQIVCYFCAATACISFIIVT 64 (164)
Q Consensus 16 ~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---------~Wr~~~~~~~~~~~l~~~~~~ 64 (164)
|.|+..+.....++++|.++....-... +|++++.+.++..++.++...
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ 59 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYI 59 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777778888888887665442111 999999888877666655553
No 160
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=89.14 E-value=1.2 Score=39.85 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=44.1
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHH-HHHHhhcCCch
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACIS-FIIVTFMPETP 70 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~-~~~~~~~pESp 70 (164)
....++.|.+|++.||+..++.++...+|.++++.++... ++...+.+.+...++. ......+||+.
T Consensus 342 ~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (1146)
T PRK08633 342 PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPDSL 414 (1146)
T ss_pred HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3456788999999999999999988888887777666554 4444555444433322 22333456553
No 161
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=88.94 E-value=3.2 Score=32.79 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=29.3
Q ss_pred hhhhhhccC-------chhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 6 YVYVSEISL-------PAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 6 ~~~i~E~~p-------~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
+.++.|..+ ++.+|...++.+....+|..+++.+...+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 333 WALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667654 56789999999999999988888876655
No 162
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=87.63 E-value=8.1 Score=31.72 Aligned_cols=66 Identities=20% Similarity=0.378 Sum_probs=47.4
Q ss_pred hhhhhhccCchhH--------------------------HHHHhHHHHHHHHHHHHHHHHHHhH-----h-------HHH
Q psy66 6 YVYVSEISLPAYR--------------------------GLFASLGPVFVSLGVLFVYYAGYML-----H-------WQI 47 (164)
Q Consensus 6 ~~~i~E~~p~~~R--------------------------g~~~~~~~~~~~~G~ll~~~~~~~~-----~-------Wr~ 47 (164)
..|+-|+++++.+ ++..+.......+|.++.-++.... + -|+
T Consensus 148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~ 227 (477)
T PF11700_consen 148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV 227 (477)
T ss_pred HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence 3467788888888 8888887777778887777776655 2 366
Q ss_pred HHHHHHHH-HHHHHHHHhhcCCchH
Q psy66 48 VCYFCAAT-ACISFIIVTFMPETPA 71 (164)
Q Consensus 48 ~~~~~~~~-~~l~~~~~~~~pESp~ 71 (164)
.+.+.++- .++.++..+++||-|+
T Consensus 228 ~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 228 AFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 66665554 5566777888898875
No 163
>PRK10054 putative transporter; Provisional
Probab=86.40 E-value=2.4 Score=33.46 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=40.6
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETP 70 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp 70 (164)
...++.+.+|++.||...+..+ ...+|..+++.+++.+ +-...+.+..+...+.++ ...-+.|.|
T Consensus 319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 319 EYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred HHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 3456789999999998877554 4457888888888777 445555554444333333 333344433
No 164
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=86.39 E-value=4.3 Score=31.71 Aligned_cols=54 Identities=9% Similarity=-0.030 Sum_probs=37.4
Q ss_pred cchhhhhhccCchhHHHHHhHHH-HHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGP-VFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS 59 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~-~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~ 59 (164)
....|+.+. |++.|+...++++ ....+|..+++.+++.+ ++. .+.+.++.+++.
T Consensus 313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T TIGR00902 313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAG-TFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 345678887 9999998888875 56788888888888877 553 344444443333
No 165
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=86.35 E-value=3.8 Score=34.03 Aligned_cols=57 Identities=12% Similarity=0.009 Sum_probs=45.3
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF 60 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~ 60 (164)
+-..++.|+.|+++-..+.++.+...++..+++|.+++.+ |=.+.|++.++..++..
T Consensus 123 A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i 183 (524)
T PF05977_consen 123 AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISI 183 (524)
T ss_pred HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999988876 66667777666544433
No 166
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=86.31 E-value=0.77 Score=36.46 Aligned_cols=49 Identities=12% Similarity=0.037 Sum_probs=39.2
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHH
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAAT 55 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~ 55 (164)
+...|..|++.|+...++.+....+|..+++.+.... +|+..+.+..+.
T Consensus 356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 3446788999999999999999999999998876554 588877666554
No 167
>KOG0254|consensus
Probab=86.29 E-value=5.3 Score=32.76 Aligned_cols=67 Identities=22% Similarity=0.157 Sum_probs=38.5
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHH-HHhHhH---HHHHH-HHHHHHHHHH-HHHhhcCCc
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYA-GYMLHW---QIVCY-FCAATACISF-IIVTFMPET 69 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~-~~~~~W---r~~~~-~~~~~~~l~~-~~~~~~pES 69 (164)
++..++.+|+.|.+.|+...++......+...+.... .....+ ...+. ..++..+... ....++||+
T Consensus 414 ~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET 486 (513)
T KOG0254|consen 414 PVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET 486 (513)
T ss_pred cchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence 3445688999999999999886665544444333222 222222 33333 3333333334 456678997
No 168
>KOG3810|consensus
Probab=86.09 E-value=3.4 Score=32.78 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=52.6
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhc
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------HWQIVCYFCAATACISFIIVTFMPETPAWYASK 76 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~ 76 (164)
-+.|+.+..+|+++.+..+..-...-.|.+.+..++-.+ +...+..+......+.+...+++|.-+|=+.-+
T Consensus 115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 467888999999999999988888888888888887655 556666665555555566667777766544433
No 169
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=85.81 E-value=1.9 Score=38.86 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=38.5
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAA 54 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~ 54 (164)
..+++.+.+|++.||++.++.++...+|..+++.+...+ +....+++.++
T Consensus 355 ~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 355 LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 456788999999999999999999999888888876655 44555444443
No 170
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=85.15 E-value=4.3 Score=33.29 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=50.3
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFMPE 68 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~pE 68 (164)
.+-.+.+|+.|+.+.+.+-+++.+.--....++|++...+ +-|.-++...+..++.+++.+++++
T Consensus 400 ~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 400 ASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 4456889999999999999999999999999999887766 5677666666665555666655554
No 171
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=85.00 E-value=4.5 Score=32.37 Aligned_cols=59 Identities=15% Similarity=0.190 Sum_probs=47.2
Q ss_pred chhhhhhccC--chhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66 5 TYVYVSEISL--PAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 5 ~~~~i~E~~p--~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~ 63 (164)
.+.+..+.++ |+.++..+++....+++|..++..++... ++....+++++..++.+...
T Consensus 318 ~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~ 382 (394)
T COG2814 318 LQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLA 382 (394)
T ss_pred hhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 3445555555 78999999999999999999999999888 88888888888776665554
No 172
>KOG2504|consensus
Probab=84.03 E-value=1.4 Score=36.46 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=39.3
Q ss_pred ccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH
Q psy66 12 ISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI 61 (164)
Q Consensus 12 ~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~ 61 (164)
...+++|+.+.++...+-++|.++-+.+.-.+ |||..+++...+.+-.+.
T Consensus 162 ~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~ 215 (509)
T KOG2504|consen 162 TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLV 215 (509)
T ss_pred hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 45678899999999999999998888877666 999988776666544433
No 173
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=83.70 E-value=22 Score=29.49 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=32.6
Q ss_pred hhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 8 YVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 8 ~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
+..|++..++-+++.++++.+.++|.+++..+..+.
T Consensus 172 faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 172 FANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999998887777
No 174
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=82.69 E-value=3.8 Score=30.62 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=41.8
Q ss_pred hhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66 9 VSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPE 68 (164)
Q Consensus 9 i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pE 68 (164)
..+..| ++||.+.++.-.+.+++..+-..+...+ .-..+......|.++.++..+++..
T Consensus 121 ~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 121 CVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheec
Confidence 345565 6899999999999998876666655544 4566777777777777766666543
No 175
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=82.44 E-value=2.7 Score=33.75 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=41.9
Q ss_pred hhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHHHHhhc
Q psy66 10 SEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-------HWQIVCYFCAATACISFIIVTFM 66 (164)
Q Consensus 10 ~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-------~Wr~~~~~~~~~~~l~~~~~~~~ 66 (164)
.|..|+ .+|...++.+....+|.++++.+.... +|+..+.+.++..++..+...+.
T Consensus 387 ~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 387 LDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred hhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 466655 899999999999999999999887654 48888888777666655444333
No 176
>KOG0253|consensus
Probab=81.88 E-value=1.5 Score=35.18 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=37.1
Q ss_pred CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
..++++|.-|+.|...|+...+......=+|.++.|+++.-.
T Consensus 452 fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~ 493 (528)
T KOG0253|consen 452 FQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRA 493 (528)
T ss_pred heEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHHh
Confidence 356789999999999999999999999999999999998433
No 177
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=80.96 E-value=1.8 Score=35.22 Aligned_cols=59 Identities=10% Similarity=0.023 Sum_probs=41.8
Q ss_pred hhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhhcC
Q psy66 8 YVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTFMP 67 (164)
Q Consensus 8 ~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~~p 67 (164)
++.|+ ++++||...++.+.+..+|..+++.+.... +|+..+.+.++..++..+..++++
T Consensus 372 ~~~~~-~~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 372 IVPFV-SRRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred cCccc-ChhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 34455 457899999998888888888887764322 699888888777666666555553
No 178
>PRK03699 putative transporter; Provisional
Probab=80.92 E-value=3.6 Score=32.30 Aligned_cols=59 Identities=7% Similarity=0.083 Sum_probs=40.3
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhc
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFM 66 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~ 66 (164)
.+..|..|. .++...+....+..+|..++|.+.... +|+..+++..+..++.+......
T Consensus 317 ~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (394)
T PRK03699 317 TLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL 379 (394)
T ss_pred HHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence 345566654 456666777777788998888887666 88888887777666655544333
No 179
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=80.83 E-value=5.3 Score=31.38 Aligned_cols=49 Identities=10% Similarity=-0.080 Sum_probs=35.3
Q ss_pred hccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH
Q psy66 11 EISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS 59 (164)
Q Consensus 11 E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~ 59 (164)
...+++.||+..++.+....+|..+++.++... +|........+.+++.
T Consensus 335 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 335 LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 344568999999999999999999998888776 5555444444443333
No 180
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=80.61 E-value=8.6 Score=31.54 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=32.3
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAG 40 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~ 40 (164)
+....++.+.+|++.+|.+++++.....+|..++..++
T Consensus 398 ~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~ 435 (489)
T PRK10207 398 ALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA 435 (489)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999999999999999998888776
No 181
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=79.11 E-value=3.7 Score=33.13 Aligned_cols=63 Identities=25% Similarity=0.157 Sum_probs=44.9
Q ss_pred hhhhhhcc--CchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH-hhcCC
Q psy66 6 YVYVSEIS--LPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV-TFMPE 68 (164)
Q Consensus 6 ~~~i~E~~--p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~-~~~pE 68 (164)
-..+.|.. .++.||...+.......+|.+++..+++.. ++|..+.+..+.+.+..+.. +..+|
T Consensus 108 Da~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 108 DALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 34556765 333488888999989999999999888777 88888887776655554444 44454
No 182
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=77.86 E-value=4.3 Score=31.77 Aligned_cols=53 Identities=8% Similarity=-0.022 Sum_probs=38.6
Q ss_pred hhhhccCchhHHHHHhH-HHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHH
Q psy66 8 YVSEISLPAYRGLFASL-GPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISF 60 (164)
Q Consensus 8 ~i~E~~p~~~Rg~~~~~-~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~ 60 (164)
++.|..+++.|+...+. .+....+|..+++.+++.+ ||+..+.+.++..++..
T Consensus 331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~ 388 (396)
T TIGR00882 331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFT 388 (396)
T ss_pred HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 55666788887775554 5677888888888777766 88888888777655543
No 183
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=77.56 E-value=13 Score=26.71 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=39.4
Q ss_pred cchhhhhhccCc-hhHHHHHhHHHH-HHHHHHHHHHHHHHhH------hHHHHHHHHHHHHH
Q psy66 4 STYVYVSEISLP-AYRGLFASLGPV-FVSLGVLFVYYAGYML------HWQIVCYFCAATAC 57 (164)
Q Consensus 4 ~~~~~i~E~~p~-~~Rg~~~~~~~~-~~~~G~ll~~~~~~~~------~Wr~~~~~~~~~~~ 57 (164)
....++.|+.|+ +.|+...+.... ...+|.++++.++... +||..+........
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 456788899888 778888887777 5777888887665544 69986666665543
No 184
>KOG2532|consensus
Probab=77.50 E-value=3.4 Score=33.78 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=45.4
Q ss_pred CchhHHHHHhHHHHHHHHHHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHHHHhhc--CCchHH
Q psy66 14 LPAYRGLFASLGPVFVSLGVLFVYYAGYML-------HWQIVCYFCAATACISFIIVTFM--PETPAW 72 (164)
Q Consensus 14 p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-------~Wr~~~~~~~~~~~l~~~~~~~~--pESp~~ 72 (164)
.|++-+..+++.+....+..+++|.+...+ .||++|++.++..++.-+.+.+. -|...|
T Consensus 387 apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w 454 (466)
T KOG2532|consen 387 APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPW 454 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecCcccCc
Confidence 677889999999999999999999887655 89999999998877665444333 444445
No 185
>PRK15075 citrate-proton symporter; Provisional
Probab=77.32 E-value=6.5 Score=31.34 Aligned_cols=39 Identities=18% Similarity=-0.028 Sum_probs=26.1
Q ss_pred chhhhhhccCchhHHHHHhHHH-HHHHHHHHHHHHHHHhH
Q psy66 5 TYVYVSEISLPAYRGLFASLGP-VFVSLGVLFVYYAGYML 43 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~-~~~~~G~ll~~~~~~~~ 43 (164)
...++.|..|++.||...++.. .+..+|..++|.+...+
T Consensus 352 ~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 352 MVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 3457889999999999888753 34444344566655444
No 186
>PRK09669 putative symporter YagG; Provisional
Probab=77.15 E-value=10 Score=30.36 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=24.5
Q ss_pred hhhhhhccC-------chhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 6 YVYVSEISL-------PAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 6 ~~~i~E~~p-------~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
...++|+.+ .+..|...+.......+|..+++.++...
T Consensus 341 ~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 341 WSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666654 33446677777777777877777776554
No 187
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=76.74 E-value=7.2 Score=32.04 Aligned_cols=65 Identities=15% Similarity=0.069 Sum_probs=47.7
Q ss_pred hhhhhhccCc--hhHHHHHhHHHHHHHHHHHHHHHHHHhH------hHHHHHHHHHHHHHHHHH-HHhhcCCch
Q psy66 6 YVYVSEISLP--AYRGLFASLGPVFVSLGVLFVYYAGYML------HWQIVCYFCAATACISFI-IVTFMPETP 70 (164)
Q Consensus 6 ~~~i~E~~p~--~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------~Wr~~~~~~~~~~~l~~~-~~~~~pESp 70 (164)
+.+++|..+. +..|..+++.+++..+.+++..+..+.. +=...+.++++..++.-+ ..+.+|..+
T Consensus 402 fal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 402 FALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3467788774 4559999999999999999998766554 445677788888766644 445577754
No 188
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=76.38 E-value=13 Score=29.35 Aligned_cols=51 Identities=6% Similarity=-0.104 Sum_probs=36.4
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATA 56 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~ 56 (164)
.+.++.+..| +.+++..+.......+|..+++.+++.+ +++..+..+++..
T Consensus 326 ~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~ 380 (394)
T PRK10213 326 WSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM 380 (394)
T ss_pred HHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 3446777776 4466667777777788888888888777 7777777766543
No 189
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=76.01 E-value=13 Score=30.82 Aligned_cols=40 Identities=8% Similarity=0.172 Sum_probs=31.4
Q ss_pred CccchhhhhhccCchhHHHHHhHHHHH-HHHHHHHHHHHHH
Q psy66 2 GSSTYVYVSEISLPAYRGLFASLGPVF-VSLGVLFVYYAGY 41 (164)
Q Consensus 2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~-~~~G~ll~~~~~~ 41 (164)
+++....+++.+|++.||.+++++... ..+|..++..++.
T Consensus 395 sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~ 435 (493)
T PRK15462 395 DPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD 435 (493)
T ss_pred ChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777899999999999999998763 4677777666544
No 190
>KOG0055|consensus
Probab=75.63 E-value=69 Score=29.76 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=28.5
Q ss_pred chhHHHHHh-HHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHH
Q psy66 15 PAYRGLFAS-LGPVFVSLGVLFVYYAGYML-HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 15 ~~~Rg~~~~-~~~~~~~~G~ll~~~~~~~~-~Wr~~~~~~~~~~~l~~~~~ 63 (164)
++.|+.... +..+...+..++..++-.+. +||....+.+..+++.+...
T Consensus 776 ~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~ 826 (1228)
T KOG0055|consen 776 SNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGY 826 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555543 44555555555555554434 99998877776665554443
No 191
>PRK09848 glucuronide transporter; Provisional
Probab=75.42 E-value=16 Score=29.21 Aligned_cols=38 Identities=13% Similarity=-0.029 Sum_probs=27.0
Q ss_pred hhhhhhccCch-------hHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 6 YVYVSEISLPA-------YRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 6 ~~~i~E~~p~~-------~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
.....|..+.+ ++|...++.+....+|..+++.+....
T Consensus 341 ~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 341 WALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666543 468888899988888888887776544
No 192
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=74.68 E-value=22 Score=23.53 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=14.4
Q ss_pred CchhHHHHHhHHH----HHHHHHHHHHHHHHHhHhHHH
Q psy66 14 LPAYRGLFASLGP----VFVSLGVLFVYYAGYMLHWQI 47 (164)
Q Consensus 14 p~~~Rg~~~~~~~----~~~~~G~ll~~~~~~~~~Wr~ 47 (164)
|+=.||....=.. .+..+|.+++-.++...+|-.
T Consensus 15 PvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~a 52 (121)
T PF11990_consen 15 PVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWWA 52 (121)
T ss_pred CCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444222 233344444444444446643
No 193
>KOG2563|consensus
Probab=74.05 E-value=21 Score=29.29 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=27.2
Q ss_pred hccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 11 EISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 11 E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
-|.|+++|..+.++..++..+|..++.++.-.+
T Consensus 167 ~WF~~~qra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 167 VWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred hhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence 457999999999998888888888888776544
No 194
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=74.00 E-value=22 Score=23.37 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=7.9
Q ss_pred HHHHhhcCCchHH
Q psy66 60 FIIVTFMPETPAW 72 (164)
Q Consensus 60 ~~~~~~~pESp~~ 72 (164)
+++.+.+|+.|.-
T Consensus 57 i~l~~~lp~~P~~ 69 (118)
T PRK10697 57 IILSFALDPMPDN 69 (118)
T ss_pred HHHHHhccCCccc
Confidence 3344567887754
No 195
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=73.64 E-value=15 Score=28.65 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=42.4
Q ss_pred chhhhhhccCc---hhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66 5 TYVYVSEISLP---AYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 5 ~~~~i~E~~p~---~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~ 63 (164)
...+++|-.++ ++|...-+.+..+.++|.+++.....++ +|.+.|.++.+..++.++..
T Consensus 54 i~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 54 ISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 34556666544 4566667788889999999998887777 89999988887766655544
No 196
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=72.96 E-value=9.2 Score=19.83 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=18.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhCCCh
Q psy66 71 AWYASKGLVVKSSASLNWLRNSSA 94 (164)
Q Consensus 71 ~~l~~~~~~~~a~~~l~~i~~~~~ 94 (164)
+.+...|++++|.+.+++.-..++
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCc
Confidence 356789999999999998866443
No 197
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=71.99 E-value=18 Score=28.48 Aligned_cols=59 Identities=8% Similarity=-0.017 Sum_probs=39.7
Q ss_pred chhhhhhccCchh-HHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHH
Q psy66 5 TYVYVSEISLPAY-RGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 5 ~~~~i~E~~p~~~-Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~ 63 (164)
..+.+.|..|++. +|...++.+....+|..++..+.... .++..+...++...+...+.
T Consensus 314 ~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK11195 314 MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAMALL 378 (393)
T ss_pred HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445677766665 79999999999999888888776655 66666655555543333333
No 198
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=70.67 E-value=26 Score=27.27 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=32.7
Q ss_pred hhhhhhccCchhHHHHHhHHH-HHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH
Q psy66 6 YVYVSEISLPAYRGLFASLGP-VFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII 62 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~-~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~ 62 (164)
..++.+. +++++++..++.+ .....|..+++.+++.+ ++. .+...+..+++.+..
T Consensus 315 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 315 MRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHH
Confidence 3456676 5556677777665 55567777888887776 553 444444444443333
No 199
>KOG2325|consensus
Probab=68.22 E-value=69 Score=26.61 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=31.0
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
.-.|++..+.++.|-++.+....+..+|.++||.++..+
T Consensus 150 lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 150 LRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 346888988888888888888888888888888877655
No 200
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.42 E-value=31 Score=22.48 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=12.1
Q ss_pred CchhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy66 14 LPAYRGLFASLGPVFVSLGVLFVYYAGY 41 (164)
Q Consensus 14 p~~~Rg~~~~~~~~~~~~G~ll~~~~~~ 41 (164)
|+=.||....=......+|...+..++.
T Consensus 12 PvV~rGlT~~El~~~~~~~~~~gl~~g~ 39 (111)
T TIGR03750 12 PVVFRGLTADELGVAAGVGLAAGLVLGL 39 (111)
T ss_pred CceecccCHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554333334444444433333
No 201
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=65.92 E-value=75 Score=26.22 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=33.4
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
..+.+|++..++-.+.-.+...+.++|.++++.+..+.
T Consensus 151 W~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 151 WGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999776654
No 202
>PRK10429 melibiose:sodium symporter; Provisional
Probab=65.85 E-value=28 Score=28.19 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=25.4
Q ss_pred chhhhhhccC-------chhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 5 TYVYVSEISL-------PAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 5 ~~~~i~E~~p-------~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
.+.++.|.++ .+..|...+......-+|..+++.+.+.+
T Consensus 345 ~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 345 QVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777755 44456677777777777777776665544
No 203
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=65.57 E-value=33 Score=22.00 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhH
Q psy66 29 VSLGVLFVYYAGYML 43 (164)
Q Consensus 29 ~~~G~ll~~~~~~~~ 43 (164)
.++|.++.+.+++..
T Consensus 9 Iglgv~~~Gg~~Y~~ 23 (104)
T PF11460_consen 9 IGLGVFLLGGLLYGG 23 (104)
T ss_pred ecHHHHHHHHHHHHH
Confidence 345555555554443
No 204
>PRK10091 MFS transport protein AraJ; Provisional
Probab=64.64 E-value=31 Score=26.89 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=32.9
Q ss_pred hhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHH
Q psy66 10 SEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFI 61 (164)
Q Consensus 10 ~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~ 61 (164)
.+..+++.++... .+....+|..+++.++... +|+..+.+.++...+...
T Consensus 316 ~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~ 370 (382)
T PRK10091 316 QNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMS 370 (382)
T ss_pred HhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHH
Confidence 3444556666542 3566778888888887665 788888877766555433
No 205
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=64.42 E-value=36 Score=26.48 Aligned_cols=38 Identities=16% Similarity=-0.038 Sum_probs=30.7
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
...+..|..| +++|...++.+....+|..+++.++...
T Consensus 320 ~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 320 ATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred HHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445667776 6789999999999999999999887777
No 206
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=63.47 E-value=12 Score=29.88 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhcCCchH
Q psy66 28 FVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFMPETPA 71 (164)
Q Consensus 28 ~~~~G~ll~~~~~~~~~Wr~~~~~~~~~~~l~~~~~~~~pESp~ 71 (164)
++.+|.+++..++....|+..+ +.++..++..+..+++||+|+
T Consensus 142 G~~ig~~l~g~l~~~~~~~~f~-~~~~~~~~~~~~~~~~~e~~~ 184 (418)
T TIGR00889 142 GFIAAMWAVSLLDIELSNIQLY-ITAGSSALLGVFALTLPDIPV 184 (418)
T ss_pred HHHHHHHHHHHhcccchhHHHH-HHHHHHHHHHHHHhcCCCCCC
Confidence 4444444444332211566444 444444444455667899874
No 207
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=63.43 E-value=37 Score=27.21 Aligned_cols=60 Identities=17% Similarity=0.107 Sum_probs=45.0
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHh
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVT 64 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~ 64 (164)
..|..+.|-.|++ -+..++++......|..+++.++..+ +||.-..+=++|+++.++..+
T Consensus 119 LLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl 183 (395)
T COG2807 119 LLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL 183 (395)
T ss_pred hhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777665 46777788888888887777777666 799999888888888766653
No 208
>KOG3762|consensus
Probab=62.33 E-value=15 Score=30.94 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=36.0
Q ss_pred ccchhhhhhccCchhHHHHHhHHH-HHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGP-VFVSLGVLFVYYAGYML----HWQIVCYFCAATACI 58 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~-~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l 58 (164)
+++..|+...+||+.|..+.++.+ .+.++|-=+|+++++.. +=|..|...++-+++
T Consensus 478 aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~ 538 (618)
T KOG3762|consen 478 AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV 538 (618)
T ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence 345678999999999999888554 34455555566665555 555555544444333
No 209
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=60.70 E-value=41 Score=25.80 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=23.3
Q ss_pred hhhhhccCchhHHHHHhHHHH-HHHHHHHHHHHHHHhH
Q psy66 7 VYVSEISLPAYRGLFASLGPV-FVSLGVLFVYYAGYML 43 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~-~~~~G~ll~~~~~~~~ 43 (164)
.++.|..| +.||...+..+. ...+|.++++.++...
T Consensus 310 ~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~ 346 (377)
T PRK11102 310 AVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAP 346 (377)
T ss_pred HHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556555 788888876554 3567777777765544
No 210
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=60.28 E-value=11 Score=17.34 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=14.9
Q ss_pred HHhcCCHHHHHHHHHHHhC
Q psy66 73 YASKGLVVKSSASLNWLRN 91 (164)
Q Consensus 73 l~~~~~~~~a~~~l~~i~~ 91 (164)
+.+.|+.++|.+.++++.+
T Consensus 10 ~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 10 YCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHccchHHHHHHHHHHHhH
Confidence 4567889999998888764
No 211
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=60.27 E-value=65 Score=24.24 Aligned_cols=50 Identities=18% Similarity=0.128 Sum_probs=25.5
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHhH----------hHHHHHHHHHHHHHHHHHHHhhc
Q psy66 17 YRGLFASLGPVFVSLGVLFVYYAGYML----------HWQIVCYFCAATACISFIIVTFM 66 (164)
Q Consensus 17 ~Rg~~~~~~~~~~~~G~ll~~~~~~~~----------~Wr~~~~~~~~~~~l~~~~~~~~ 66 (164)
.|..-+++.+..|+...++..+...-. ...++..++.+..++....+.++
T Consensus 76 i~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 76 IKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFI 135 (254)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeee
Confidence 344444555555555555544443321 44566666666666555555444
No 212
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=58.55 E-value=13 Score=17.33 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=16.7
Q ss_pred HHHhcCCHHHHHHHHHHHhCC
Q psy66 72 WYASKGLVVKSSASLNWLRNS 92 (164)
Q Consensus 72 ~l~~~~~~~~a~~~l~~i~~~ 92 (164)
.+.+.|+.++|.+.++++...
T Consensus 9 ~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 9 GLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHCCCHHHHHHHHHHHHHc
Confidence 356788999999999888654
No 213
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=57.95 E-value=56 Score=22.12 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=18.5
Q ss_pred hhhccCchhHHHHHhHHHHHHHHH
Q psy66 9 VSEISLPAYRGLFASLGPVFVSLG 32 (164)
Q Consensus 9 i~E~~p~~~Rg~~~~~~~~~~~~G 32 (164)
+.|+.|+..|....+.........
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~~ 83 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSAV 83 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHH
Confidence 579999999998888777554443
No 214
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=57.90 E-value=33 Score=19.39 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=26.3
Q ss_pred hhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy66 10 SEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVC 49 (164)
Q Consensus 10 ~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~~Wr~~~ 49 (164)
+-+..+++...+....-.....|..-+-.+-+..+||.+.
T Consensus 3 ~r~~G~k~~~lak~w~ps~~~~G~~~~l~lvy~TDWklIl 42 (56)
T PF08997_consen 3 SRLIGPKYIELAKNWIPSAAAWGAAGGLALVYFTDWKLIL 42 (56)
T ss_dssp GGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhhhcHHHHHHHHHhchhHHHHhhhhhhheeeecchHhhh
Confidence 3456677777777777777777776555555555999654
No 215
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=56.51 E-value=12 Score=17.10 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=11.9
Q ss_pred HHhcCCHHHHHHHHH
Q psy66 73 YASKGLVVKSSASLN 87 (164)
Q Consensus 73 l~~~~~~~~a~~~l~ 87 (164)
+...|+.++|++.++
T Consensus 11 ~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 11 LLAQGDPDEAERLLR 25 (26)
T ss_pred HHHcCCHHHHHHHHh
Confidence 467899999988764
No 216
>KOG2513|consensus
Probab=56.51 E-value=1.1e+02 Score=26.12 Aligned_cols=15 Identities=47% Similarity=1.156 Sum_probs=11.2
Q ss_pred HHHHhhcCCchHHHH
Q psy66 60 FIIVTFMPETPAWYA 74 (164)
Q Consensus 60 ~~~~~~~pESp~~l~ 74 (164)
+++.+.+||+|+|..
T Consensus 587 flis~vipe~p~wva 601 (647)
T KOG2513|consen 587 FLISSVIPESPRWVA 601 (647)
T ss_pred HHHHHhcCCChHHHH
Confidence 344566899999985
No 217
>PF13041 PPR_2: PPR repeat family
Probab=56.24 E-value=16 Score=19.38 Aligned_cols=22 Identities=9% Similarity=0.145 Sum_probs=17.9
Q ss_pred HHHhcCCHHHHHHHHHHHhCCC
Q psy66 72 WYASKGLVVKSSASLNWLRNSS 93 (164)
Q Consensus 72 ~l~~~~~~~~a~~~l~~i~~~~ 93 (164)
.+.++|+.++|.+.++++.+.+
T Consensus 12 ~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 12 GYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHCcCHHHHHHHHHHHHHcC
Confidence 4568899999999999887653
No 218
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=55.80 E-value=46 Score=20.47 Aligned_cols=57 Identities=14% Similarity=-0.052 Sum_probs=29.8
Q ss_pred ccchhhhhhcc-CchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEIS-LPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 3 ~~~~~~i~E~~-p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~ 63 (164)
+..|..+.|.- ....-|...+ ...+|++++.+.+... ..|..+..+.+...+....+
T Consensus 13 plLP~M~~~~~ls~~~ag~las----aNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~m 74 (85)
T PF06779_consen 13 PLLPLMQADGGLSLSQAGWLAS----ANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAM 74 (85)
T ss_pred hHhHHHHHhcCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 44566666664 4444444444 4455555555555444 44455555555555554444
No 219
>KOG2504|consensus
Probab=55.77 E-value=6.4 Score=32.62 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=50.3
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhcC
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFMP 67 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~p 67 (164)
++.+.|+.+.+.-..+.++..++.+++.++++.++... +|...|.++++..++.....+..|
T Consensus 410 ~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 410 PVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 45678999999889999999999999999999998877 688888888887666655554444
No 220
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=55.48 E-value=12 Score=30.50 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=39.1
Q ss_pred hhhhccCchhHHHHHhHHHHHHHH-HHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH
Q psy66 8 YVSEISLPAYRGLFASLGPVFVSL-GVLFVYYAGYML----HWQIVCYFCAATACISFI 61 (164)
Q Consensus 8 ~i~E~~p~~~Rg~~~~~~~~~~~~-G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~ 61 (164)
-..|.+|++.-|.+.++.+.+..+ |..++...-... +|-..|++-.+.+++..+
T Consensus 370 ~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~l 428 (448)
T COG2271 370 AAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAIL 428 (448)
T ss_pred HHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHH
Confidence 457999999999999999877777 665555444444 999888876666555543
No 221
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=55.26 E-value=34 Score=21.90 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=21.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhCCChhhHHHHHHHHH
Q psy66 71 AWYASKGLVVKSSASLNWLRNSSAIANAEIADILQ 105 (164)
Q Consensus 71 ~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~ 105 (164)
++.-.+.+.++.++.+.++...+.....+++.+++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45555666666666677776655556666555544
No 222
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=55.16 E-value=83 Score=23.23 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh--cCCchHHHHhcCCHHHHHHHHHHHhC
Q psy66 44 HWQIVCYFCAATACISFIIVTF--MPETPAWYASKGLVVKSSASLNWLRN 91 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~~~~~~~--~pESp~~l~~~~~~~~a~~~l~~i~~ 91 (164)
++.|.+++.+++..++..++.+ --|..-|--..|++..|..+++.+++
T Consensus 50 ~~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~lr~ 99 (224)
T PF13829_consen 50 GSWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNLRR 99 (224)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhhcC
Confidence 5556666666654444333322 35555566678889888888888876
No 223
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=54.77 E-value=38 Score=19.13 Aligned_cols=40 Identities=15% Similarity=0.289 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 31 LGVLFVYYAGYML----HWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 31 ~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
+|.+++++.+... +......++.+.+++.......+|..+
T Consensus 13 l~~vvgyI~ssL~~~~~n~~~~~Ii~vi~~i~~~~~~~~i~~~~ 56 (57)
T PF11151_consen 13 LGEVVGYIGSSLTGVTYNFTTAAIIAVIFGIIVANIIAVIPKKS 56 (57)
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4555555554444 888888888888877777666666654
No 224
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=52.83 E-value=24 Score=28.18 Aligned_cols=37 Identities=14% Similarity=-0.174 Sum_probs=29.8
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
....|..|++.||...++.+....+|..+++.+....
T Consensus 371 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 371 TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999988887766544
No 225
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=52.38 E-value=66 Score=21.25 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHH-----H-HHHHHhhcCCchHH
Q psy66 44 HWQIVCYFCAATAC-----I-SFIIVTFMPETPAW 72 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~-----l-~~~~~~~~pESp~~ 72 (164)
-.|+++++..+++. + .+++.+++|+.|.-
T Consensus 30 ~VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~~ 64 (121)
T TIGR02978 30 LVRILVVSALLFGGGFFVLVAYIALWLLLDKKPIN 64 (121)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCccc
Confidence 45776666544321 1 23345667888754
No 226
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.84 E-value=60 Score=23.35 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=17.0
Q ss_pred HhcCCHHHHHHHHHHHhCCC
Q psy66 74 ASKGLVVKSSASLNWLRNSS 93 (164)
Q Consensus 74 ~~~~~~~~a~~~l~~i~~~~ 93 (164)
+.+|+.++|.++++++.+.+
T Consensus 122 m~~g~Fk~A~eiLkr~~~d~ 141 (200)
T cd00280 122 MENGEFKKAEEVLKRLFSDP 141 (200)
T ss_pred HhcCchHHHHHHHHHHhcCC
Confidence 46899999999999998743
No 227
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=51.03 E-value=62 Score=26.21 Aligned_cols=60 Identities=8% Similarity=0.039 Sum_probs=42.1
Q ss_pred cchhhhhhccCchhHHHHHhH-HHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASL-GPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~ 63 (164)
.+.-|+.+..|++..++.-.+ .+....+|..+.+.+++.. |.+..+++.+...++..+..
T Consensus 332 a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~ 396 (412)
T PF01306_consen 332 AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLIS 396 (412)
T ss_dssp HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHh
Confidence 345589999999998766665 5788888888888887777 77877766665555444433
No 228
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=50.42 E-value=40 Score=28.21 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=27.1
Q ss_pred hhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 10 SEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 10 ~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
-.+..++++|.+.+...++...|++++..+-..+
T Consensus 144 LT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 144 LTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred hhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 4456788899999999999999998887765544
No 229
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=48.18 E-value=87 Score=21.41 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=17.6
Q ss_pred hhhccCchhHHHHHhHHHHHHHH
Q psy66 9 VSEISLPAYRGLFASLGPVFVSL 31 (164)
Q Consensus 9 i~E~~p~~~Rg~~~~~~~~~~~~ 31 (164)
+.|+.|+..|....+.+......
T Consensus 58 LkDm~Pp~~R~~i~~~~s~t~s~ 80 (145)
T TIGR00986 58 LKDIVPPTTRGWIYHKYSTTTNF 80 (145)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHH
Confidence 57999999999888776654443
No 230
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=46.67 E-value=63 Score=19.36 Aligned_cols=33 Identities=15% Similarity=0.392 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHH
Q psy66 23 SLGPVFVSLGVLFVYYAGYML-HWQIVCYFCAAT 55 (164)
Q Consensus 23 ~~~~~~~~~G~ll~~~~~~~~-~Wr~~~~~~~~~ 55 (164)
-+.+....++.+++.++|+.. +-+..+.+-++-
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g 44 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYITQSFSYTFYIYGAG 44 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777 666655544443
No 231
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=46.65 E-value=31 Score=27.82 Aligned_cols=46 Identities=11% Similarity=-0.166 Sum_probs=23.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhc
Q psy66 21 FASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFM 66 (164)
Q Consensus 21 ~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~ 66 (164)
..+.+..+.+.|.++++.....+ .-|....+....+++..+.++++
T Consensus 144 ~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~ 194 (402)
T PF02487_consen 144 SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFL 194 (402)
T ss_pred ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555565666666554444 33555555554455554444443
No 232
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=46.51 E-value=1.1e+02 Score=23.34 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=28.2
Q ss_pred chhhhhhccCchhHHHHHhHHHHHH-HHHHHHHHHHHHhH---hHHHHHHH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFV-SLGVLFVYYAGYML---HWQIVCYF 51 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~-~~G~ll~~~~~~~~---~Wr~~~~~ 51 (164)
...+..|..| +.||...++.+... ..|.+.++.++... +|...+..
T Consensus 321 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 321 AMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHHH
Confidence 3445667665 67888888766554 45777777766333 45444433
No 233
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=45.83 E-value=31 Score=19.20 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=9.3
Q ss_pred HhcCCHHHHHHHHHHHh
Q psy66 74 ASKGLVVKSSASLNWLR 90 (164)
Q Consensus 74 ~~~~~~~~a~~~l~~i~ 90 (164)
+..|++++|.+.+++..
T Consensus 2 l~~~~~~~A~~~~~~~l 18 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKAL 18 (68)
T ss_dssp HHTTHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHH
Confidence 34555566655555543
No 234
>PF12854 PPR_1: PPR repeat
Probab=44.85 E-value=25 Score=17.15 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=13.5
Q ss_pred HHhcCCHHHHHHHHHHH
Q psy66 73 YASKGLVVKSSASLNWL 89 (164)
Q Consensus 73 l~~~~~~~~a~~~l~~i 89 (164)
+-+.|+.++|.+.+.+.
T Consensus 17 ~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 17 YCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHCCCHHHHHHHHHhC
Confidence 45789999999988754
No 235
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=44.48 E-value=1.7e+02 Score=25.08 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCchHH
Q psy66 44 HWQIVCYFCAATACISFIIVTFMPETPAW 72 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~~~~~~~~pESp~~ 72 (164)
+.|+++++...++++.++..+|+++--++
T Consensus 531 ay~~V~~~siaFG~vaiiaa~fl~d~~~~ 559 (599)
T PF06609_consen 531 AYRYVYYSSIAFGVVAIIAALFLGDIDKY 559 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHh
Confidence 66777777666677777777777665444
No 236
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=43.79 E-value=1.4e+02 Score=25.78 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=36.1
Q ss_pred hhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHH
Q psy66 10 SEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACIS 59 (164)
Q Consensus 10 ~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~ 59 (164)
..-+|+..|....+++.+..++|.++...++..- .|--.+.+.++..+.+
T Consensus 591 ~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (654)
T TIGR00926 591 YSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFENFSVQAAEFFLFASLMLVVM 644 (654)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999998887666 3333444444444333
No 237
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=42.84 E-value=89 Score=19.97 Aligned_cols=27 Identities=15% Similarity=0.502 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHH-HHHHhhcCCch
Q psy66 44 HWQIVCYFCAATACIS-FIIVTFMPETP 70 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~-~~~~~~~pESp 70 (164)
+|+.+++++...++++ .+...+.||+.
T Consensus 58 ~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 58 GWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8999999888776555 45567789864
No 238
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=42.54 E-value=38 Score=27.61 Aligned_cols=38 Identities=11% Similarity=-0.019 Sum_probs=29.2
Q ss_pred hhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
...+.+..|++.+|...++.+....+|..++..+...+
T Consensus 373 ~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 373 TSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888899988888888888888877665533
No 239
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=42.36 E-value=35 Score=27.81 Aligned_cols=66 Identities=9% Similarity=0.048 Sum_probs=49.6
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----HWQIVCYFCAATACISFIIVTFMPE 68 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~Wr~~~~~~~~~~~l~~~~~~~~pE 68 (164)
+.+-.|.++..|+++-+++-+++.+.--.+..++|++-... +=|.-+....+...+-++..+.+|+
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~ 430 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKV 430 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecC
Confidence 45567899999999999999999999888888888886655 6666555555555555555556665
No 240
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=41.05 E-value=16 Score=30.17 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=41.6
Q ss_pred cchhhhhhccCch--hHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH
Q psy66 4 STYVYVSEISLPA--YRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII 62 (164)
Q Consensus 4 ~~~~~i~E~~p~~--~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~ 62 (164)
.....++|..|++ +|....+++.++.++|.++++.+..+. +|...|..+++-..+.++.
T Consensus 137 NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 137 NISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred cHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 3456677776432 255556777888889999999988777 9999888877754444433
No 241
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=41.01 E-value=1.2e+02 Score=21.12 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q psy66 44 HWQIVCYFCAATACISFIIVTFM 66 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~~~~~~~~ 66 (164)
+|-.+++....+.++++++..|+
T Consensus 17 ~~~t~~~~iInFliL~~lL~~~l 39 (173)
T PRK13453 17 EWGTVIVTVLTFIVLLALLKKFA 39 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555555555555444
No 242
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=40.95 E-value=31 Score=16.09 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=13.8
Q ss_pred HHhcCCHHHHHHHHHHHhC
Q psy66 73 YASKGLVVKSSASLNWLRN 91 (164)
Q Consensus 73 l~~~~~~~~a~~~l~~i~~ 91 (164)
+...|+.++|.+.+++...
T Consensus 11 ~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 11 YYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4578899999998877643
No 243
>PRK11187 replication initiation regulator SeqA; Provisional
Probab=40.54 E-value=23 Score=25.13 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=19.4
Q ss_pred hcCCchHHHHhcCCHHHHHHHHHHHh
Q psy66 65 FMPETPAWYASKGLVVKSSASLNWLR 90 (164)
Q Consensus 65 ~~pESp~~l~~~~~~~~a~~~l~~i~ 90 (164)
-+|+||.|.+.+++..+-+..+..+-
T Consensus 140 ~Ip~TpfWViTNtNT~RKr~ml~~vm 165 (182)
T PRK11187 140 HIPGTPFWVITNTNTGRKRSMLEHVM 165 (182)
T ss_pred cCCCCCeeEEeCCCcHHHHHHHHHHH
Confidence 47999999998888777665555543
No 244
>PRK09848 glucuronide transporter; Provisional
Probab=40.53 E-value=1.9e+02 Score=23.07 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=17.6
Q ss_pred hhhcc-CchhHHHHHhHHHHHHH-----HHHHHHHHHH
Q psy66 9 VSEIS-LPAYRGLFASLGPVFVS-----LGVLFVYYAG 40 (164)
Q Consensus 9 i~E~~-p~~~Rg~~~~~~~~~~~-----~G~ll~~~~~ 40 (164)
..|++ ++++|....+.-+.+.+ +|..+++.++
T Consensus 134 ~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~ 171 (448)
T PRK09848 134 ATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIK 171 (448)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45665 55778887665544322 3444455444
No 245
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=39.64 E-value=57 Score=22.51 Aligned_cols=8 Identities=38% Similarity=0.464 Sum_probs=6.3
Q ss_pred cCCchHHH
Q psy66 66 MPETPAWY 73 (164)
Q Consensus 66 ~pESp~~l 73 (164)
+||||++.
T Consensus 1 ~~~~~~~~ 8 (156)
T PRK05988 1 MPDEPWDA 8 (156)
T ss_pred CCCchhHH
Confidence 68999765
No 246
>COG3462 Predicted membrane protein [Function unknown]
Probab=39.40 E-value=1.1e+02 Score=19.92 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHH
Q psy66 79 VVKSSASLNWLRNSSAIANAEIADI 103 (164)
Q Consensus 79 ~~~a~~~l~~i~~~~~~~~~~~~~~ 103 (164)
-++|.++++.-..+.+-.++|...+
T Consensus 87 ~sRA~eIlkER~AkGEItEEEY~r~ 111 (117)
T COG3462 87 GSRAEEILKERYAKGEITEEEYRRI 111 (117)
T ss_pred ccHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3567777766554444444444443
No 247
>KOG4686|consensus
Probab=39.03 E-value=60 Score=25.53 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=40.8
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-------hHHHHHH-HHHHHHHHHHHHH
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-------HWQIVCY-FCAATACISFIIV 63 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-------~Wr~~~~-~~~~~~~l~~~~~ 63 (164)
..++-+.|-+.-|.+-+..+...++|..+.++++..+ +|--.|. +....+++.....
T Consensus 375 P~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil 439 (459)
T KOG4686|consen 375 PCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGIL 439 (459)
T ss_pred hhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 3466778889999999999999999999999998877 4443443 3333444444444
No 248
>KOG1278|consensus
Probab=38.23 E-value=70 Score=27.06 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=27.0
Q ss_pred hccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-------hHHHHHH
Q psy66 11 EISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-------HWQIVCY 50 (164)
Q Consensus 11 E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-------~Wr~~~~ 50 (164)
-...|..||..++...+.+.++.+++...+.-+ .|+...+
T Consensus 354 GflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~~~~ 400 (628)
T KOG1278|consen 354 GFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKRNAI 400 (628)
T ss_pred ccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchhhHH
Confidence 345677788888877777777776666665544 7765433
No 249
>PRK11462 putative transporter; Provisional
Probab=37.50 E-value=2.2e+02 Score=23.03 Aligned_cols=24 Identities=17% Similarity=-0.018 Sum_probs=12.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q psy66 18 RGLFASLGPVFVSLGVLFVYYAGY 41 (164)
Q Consensus 18 Rg~~~~~~~~~~~~G~ll~~~~~~ 41 (164)
.|...+......-+|..+++.++.
T Consensus 359 ~g~~~a~~~f~~Klg~alg~~i~g 382 (460)
T PRK11462 359 TGISFAGTLFVLKLGLAFGGALIG 382 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355445555555555555555443
No 250
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=36.56 E-value=18 Score=23.98 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q psy66 46 QIVCYFCAATACIS 59 (164)
Q Consensus 46 r~~~~~~~~~~~l~ 59 (164)
||++++..+..+++
T Consensus 1 RW~l~~iii~~i~l 14 (130)
T PF12273_consen 1 RWVLFAIIIVAILL 14 (130)
T ss_pred CeeeHHHHHHHHHH
Confidence 45555444444333
No 251
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=36.34 E-value=77 Score=17.39 Aligned_cols=25 Identities=8% Similarity=-0.090 Sum_probs=19.6
Q ss_pred HHHhcCCHHHHHHHHHHHhCCChhh
Q psy66 72 WYASKGLVVKSSASLNWLRNSSAIA 96 (164)
Q Consensus 72 ~l~~~~~~~~a~~~l~~i~~~~~~~ 96 (164)
-++..|+.++|.+.++.+.+.+++.
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~ 30 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDN 30 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3567889999999999998765443
No 252
>PHA02898 virion envelope protein; Provisional
Probab=36.10 E-value=1.1e+02 Score=19.04 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy66 44 HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~~~~~ 63 (164)
-||.+..++.+.+.++.+..
T Consensus 43 ~wRalSii~FIlgivl~lG~ 62 (92)
T PHA02898 43 ALRSISIISFILAIILILGI 62 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 79999999998876665543
No 253
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=35.46 E-value=88 Score=17.83 Aligned_cols=27 Identities=11% Similarity=0.269 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHH----HHHHHHHhhcCCch
Q psy66 44 HWQIVCYFCAATA----CISFIIVTFMPETP 70 (164)
Q Consensus 44 ~Wr~~~~~~~~~~----~l~~~~~~~~pESp 70 (164)
-+|.++.+..+.. ++.++....+|+.|
T Consensus 30 ~vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 30 LVRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 6687777766643 12233345578865
No 254
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=35.42 E-value=48 Score=15.34 Aligned_cols=18 Identities=11% Similarity=0.051 Sum_probs=13.4
Q ss_pred HhcCCHHHHHHHHHHHhC
Q psy66 74 ASKGLVVKSSASLNWLRN 91 (164)
Q Consensus 74 ~~~~~~~~a~~~l~~i~~ 91 (164)
.+.|+.++|.++++.+..
T Consensus 12 ~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 12 AKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 467788888888777654
No 255
>KOG3764|consensus
Probab=34.90 E-value=51 Score=26.91 Aligned_cols=46 Identities=13% Similarity=-0.005 Sum_probs=36.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH
Q psy66 17 YRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII 62 (164)
Q Consensus 17 ~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~ 62 (164)
--|...++.+.++++|..++|.++..+ +.+|.-.+.++..++....
T Consensus 400 vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapv 449 (464)
T KOG3764|consen 400 VYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPV 449 (464)
T ss_pred eeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHH
Confidence 446777899999999999999999888 8888777777766665443
No 256
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=34.85 E-value=2.4e+02 Score=24.43 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=36.5
Q ss_pred hhhhhhccCch---hHHHHHhHHHHHHHHHHHHHHHHHHhH-----------hHHHHHHHHHHHHHHHHHHH
Q psy66 6 YVYVSEISLPA---YRGLFASLGPVFVSLGVLFVYYAGYML-----------HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 6 ~~~i~E~~p~~---~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----------~Wr~~~~~~~~~~~l~~~~~ 63 (164)
.....|-.+++ .|...-..+..+.++|.+++..+..++ +|...|.++++..++.++..
T Consensus 107 saf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 107 SAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred hhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence 34455555433 355566677777778888776665444 38888888877766554443
No 257
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=34.08 E-value=39 Score=15.49 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=13.3
Q ss_pred HhcCCHHHHHHHHHHHhC
Q psy66 74 ASKGLVVKSSASLNWLRN 91 (164)
Q Consensus 74 ~~~~~~~~a~~~l~~i~~ 91 (164)
...|+.++|.+.++++-.
T Consensus 11 ~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 11 YKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 456788888888877653
No 258
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=34.07 E-value=86 Score=17.26 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCC
Q psy66 44 HWQIVCYFCAATACISFIIVTFMPE 68 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~~~~~~~~pE 68 (164)
.|.++|++..+.++..++....++.
T Consensus 23 ww~~~f~~tivfa~~Y~~~yp~~~~ 47 (51)
T PF14715_consen 23 WWLWLFYGTIVFAVGYLVLYPGLGN 47 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc
Confidence 6888888888888877776644444
No 259
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=33.99 E-value=1.9e+02 Score=22.43 Aligned_cols=46 Identities=11% Similarity=0.023 Sum_probs=22.7
Q ss_pred hhhhccCchhH-HHHHhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy66 8 YVSEISLPAYR-GLFASLGPVFVSLGVLFVYYAGYMLHWQIVCYFCA 53 (164)
Q Consensus 8 ~i~E~~p~~~R-g~~~~~~~~~~~~G~ll~~~~~~~~~Wr~~~~~~~ 53 (164)
...+..|.+.| |...++..+...+|..+++.+....++........
T Consensus 314 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~ 360 (392)
T PRK10473 314 MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIG 360 (392)
T ss_pred HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 34455665555 44444555555555555555554445544333333
No 260
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=32.99 E-value=1.3e+02 Score=25.10 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=34.8
Q ss_pred CccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHH
Q psy66 2 GSSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGY 41 (164)
Q Consensus 2 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~ 41 (164)
+++...++.-.+|++..+.+++++.+....|..++..++.
T Consensus 412 SpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 412 SPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred CHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 4566678889999999999999999999999998888876
No 261
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=32.75 E-value=89 Score=26.07 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=27.9
Q ss_pred hccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-------hHHHHH
Q psy66 11 EISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-------HWQIVC 49 (164)
Q Consensus 11 E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-------~Wr~~~ 49 (164)
-...++.||...+.....+.++..++..++... .|+...
T Consensus 288 g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~ 333 (521)
T PF02990_consen 288 GFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNS 333 (521)
T ss_pred hhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehh
Confidence 445677788888877777777777777776555 888643
No 262
>PHA03048 IMV membrane protein; Provisional
Probab=31.71 E-value=1.3e+02 Score=18.71 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy66 44 HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~~~~~ 63 (164)
-||.+..++.+.+.++.+..
T Consensus 42 ~wRalsii~FIlgivl~lG~ 61 (93)
T PHA03048 42 VWRALSGIAFVLGIVMTIGM 61 (93)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 89999999998877665543
No 263
>KOG2615|consensus
Probab=31.58 E-value=40 Score=27.36 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=32.5
Q ss_pred hhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 7 VYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 7 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
..+.-..|++.||...+.......++-.++|++++..
T Consensus 375 ~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 375 SLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 3567788999999999999999999999999998655
No 264
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=31.08 E-value=2.8e+02 Score=22.21 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCch
Q psy66 48 VCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~~pESp 70 (164)
.+++.+..+++.......+|+.|
T Consensus 161 ~~~i~~~~~~ll~~~~l~lp~~~ 183 (400)
T PF03825_consen 161 IFYIAAILSLLLAGFALFLPKTP 183 (400)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCc
Confidence 44444444444444556678876
No 265
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=29.97 E-value=1.5e+02 Score=24.42 Aligned_cols=18 Identities=22% Similarity=0.704 Sum_probs=12.7
Q ss_pred HHHHHHHhhcCCchHHHH
Q psy66 57 CISFIIVTFMPETPAWYA 74 (164)
Q Consensus 57 ~l~~~~~~~~pESp~~l~ 74 (164)
.+.....+|.||-|.|..
T Consensus 113 Ai~~y~~~WfP~vP~Wv~ 130 (462)
T COG1113 113 AIGIYLQFWFPDVPQWVF 130 (462)
T ss_pred HHHHHHHHhcCCCcHHHH
Confidence 334456688999999973
No 266
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=29.65 E-value=1.5e+02 Score=18.84 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=14.8
Q ss_pred hHHHH-HhHHHHHHHHHHHHHHHHHHhH
Q psy66 17 YRGLF-ASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 17 ~Rg~~-~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
.|+.. .+.......+..+++..++.++
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WL 66 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWL 66 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 2344444555566666677766
No 267
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=29.60 E-value=1.3e+02 Score=18.04 Aligned_cols=8 Identities=25% Similarity=0.102 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q psy66 83 SASLNWLR 90 (164)
Q Consensus 83 ~~~l~~i~ 90 (164)
.+.++.+.
T Consensus 41 ~~~L~~L~ 48 (75)
T PF06667_consen 41 EQRLQELY 48 (75)
T ss_pred HHHHHHHH
Confidence 33444444
No 268
>KOG2325|consensus
Probab=29.49 E-value=26 Score=28.98 Aligned_cols=39 Identities=13% Similarity=-0.005 Sum_probs=33.9
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
..+.-+|+..|+..|....+++...+++.++++++....
T Consensus 409 ~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~ 447 (488)
T KOG2325|consen 409 LDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAI 447 (488)
T ss_pred HHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhh
Confidence 445678999999999999999999999999998887665
No 269
>PF03925 SeqA: SeqA protein; InterPro: IPR005621 The binding of SeqA protein to hemimethylated GATC sequences is important in the negative modulation of chromosomal initiation at oriC, and in the formation of SeqA foci necessary for Escherichia coli chromosome segregation []. SeqA tetramers are able to aggregate or multimerize in a reversible, concentration-dependent manner []. Apart from its function in the control of DNA replication, SeqA may also be a specific transcription factor []. The C-terminal domain binds DNA, binding to fully methylated and hemimethylated GATC sequences at oriC. The structure of the C-terminal domain consists of seven alpha-helices and three-stranded beta-sheet.; GO: 0003677 DNA binding, 0032297 negative regulation of DNA-dependent DNA replication initiation; PDB: 3FMT_A 1J3E_A 1XRX_D 1IU3_C 1LRR_D.
Probab=28.74 E-value=29 Score=24.82 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=15.2
Q ss_pred hcCCchHHHHhcCCHHHHHHHHHHHh
Q psy66 65 FMPETPAWYASKGLVVKSSASLNWLR 90 (164)
Q Consensus 65 ~~pESp~~l~~~~~~~~a~~~l~~i~ 90 (164)
-+|+||.|.+.+++..+-+..+..+-
T Consensus 148 ~IP~TpfWVITN~NT~RKr~Mle~vM 173 (190)
T PF03925_consen 148 QIPGTPFWVITNNNTGRKRSMLEEVM 173 (190)
T ss_dssp E-TTSS-EEE--S-HHHHHHHHHHHH
T ss_pred cCCCCCeEEEecCChHHHHHHHHHHH
Confidence 37999999999888877666555543
No 270
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=28.56 E-value=95 Score=25.84 Aligned_cols=18 Identities=11% Similarity=-0.067 Sum_probs=10.8
Q ss_pred hcCCHHHHHHHHHHHhCC
Q psy66 75 SKGLVVKSSASLNWLRNS 92 (164)
Q Consensus 75 ~~~~~~~a~~~l~~i~~~ 92 (164)
..+-+++.++++++..++
T Consensus 271 g~~lp~~v~~~l~~~~~~ 288 (515)
T TIGR00774 271 GEKLPDNVRQILVDFDRE 288 (515)
T ss_pred cccCCHHHHHHHHHHhHH
Confidence 334466777777766543
No 271
>COG1288 Predicted membrane protein [Function unknown]
Probab=28.47 E-value=1.4e+02 Score=24.55 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy66 44 HWQIVCYFCAATACISFII 62 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~~~~ 62 (164)
+||.+.++......+...+
T Consensus 217 ~~Riv~~v~~~~~~i~y~~ 235 (481)
T COG1288 217 GLRIVVWVVFTLISIIYVY 235 (481)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999988877765544443
No 272
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=28.41 E-value=1.2e+02 Score=18.92 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=27.6
Q ss_pred CCchHHHHhcCCHHHHH---HHHHHHhCCChhhHHHHHHHHHH
Q psy66 67 PETPAWYASKGLVVKSS---ASLNWLRNSSAIANAEIADILQS 106 (164)
Q Consensus 67 pESp~~l~~~~~~~~a~---~~l~~i~~~~~~~~~~~~~~~~~ 106 (164)
.|..|..+.++|.++-+ -.++|+++..+.-+.++.++.-.
T Consensus 45 D~~~r~ImehnrdeE~eHa~mlLEwlrR~~p~wd~eL~eiLft 87 (103)
T COG3461 45 DEDLRAIMEHNRDEEKEHAAMLLEWLRRHDPAWDAELHEILFT 87 (103)
T ss_pred cHhHHHHHHHcccHHHHHHHHHHHHHHHcCchHHHHHHHHHhc
Confidence 45567777777766533 35888888777777777776544
No 273
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=28.30 E-value=59 Score=21.90 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=21.0
Q ss_pred HHhcCCHHHHHHHHHHHhCCC-hhhHHHHHHHH
Q psy66 73 YASKGLVVKSSASLNWLRNSS-AIANAEIADIL 104 (164)
Q Consensus 73 l~~~~~~~~a~~~l~~i~~~~-~~~~~~~~~~~ 104 (164)
++.+|+.++|++-+++..+.- ....+++..+.
T Consensus 52 Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~ 84 (142)
T PF04494_consen 52 LVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLS 84 (142)
T ss_dssp HHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHT
T ss_pred HHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 678899999999999987642 22444444443
No 274
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.21 E-value=61 Score=18.41 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=13.3
Q ss_pred HHhcCCHHHHHHHHHHHhC
Q psy66 73 YASKGLVVKSSASLNWLRN 91 (164)
Q Consensus 73 l~~~~~~~~a~~~l~~i~~ 91 (164)
++.-|++++|.+.++.+.+
T Consensus 33 llqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 33 LLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 4567888999888777653
No 275
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=28.19 E-value=65 Score=21.38 Aligned_cols=31 Identities=6% Similarity=0.200 Sum_probs=20.4
Q ss_pred HHhcCCHHHHHHHHHHHhCC-ChhhHHHHHHH
Q psy66 73 YASKGLVVKSSASLNWLRNS-SAIANAEIADI 103 (164)
Q Consensus 73 l~~~~~~~~a~~~l~~i~~~-~~~~~~~~~~~ 103 (164)
++.+|..++|++-+++..+. +....++++.+
T Consensus 41 lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L 72 (133)
T cd08044 41 LVASGHLEEAKSFFERFSGDFEDSHSEDIKKL 72 (133)
T ss_pred HHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHH
Confidence 47788899999988888763 22334444443
No 276
>PF15050 SCIMP: SCIMP protein
Probab=27.73 E-value=41 Score=22.17 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=11.6
Q ss_pred HHHHhcCCHHHHHHHHH
Q psy66 71 AWYASKGLVVKSSASLN 87 (164)
Q Consensus 71 ~~l~~~~~~~~a~~~l~ 87 (164)
||++++|+.-|+.+.++
T Consensus 32 R~~lRqGkkweiakp~k 48 (133)
T PF15050_consen 32 RWQLRQGKKWEIAKPLK 48 (133)
T ss_pred HHHHHccccceeccchh
Confidence 68888888766555443
No 277
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=27.15 E-value=82 Score=15.19 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=12.1
Q ss_pred HHhcCCHHHHHHHHHHHh
Q psy66 73 YASKGLVVKSSASLNWLR 90 (164)
Q Consensus 73 l~~~~~~~~a~~~l~~i~ 90 (164)
+...|+.++|.+..++..
T Consensus 12 ~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 12 YRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHCT-HHHHHHHHHHHH
T ss_pred HHhhhhcchhhHHHHHHH
Confidence 456788899888766553
No 278
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=26.97 E-value=3.5e+02 Score=22.03 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhh-cCCch
Q psy66 29 VSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTF-MPETP 70 (164)
Q Consensus 29 ~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~-~pESp 70 (164)
.++|..++..+++.+ +=+..+++++..+++..+...+ -|+.+
T Consensus 147 GSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~ 192 (412)
T PF01306_consen 147 GSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVP 192 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SS
T ss_pred hhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCc
Confidence 345555555555544 4556777776665555444333 34433
No 279
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=26.65 E-value=1.3e+02 Score=17.18 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=15.7
Q ss_pred hhcCCchHHHHhcCCHHHHHHHHHHHhCCC
Q psy66 64 TFMPETPAWYASKGLVVKSSASLNWLRNSS 93 (164)
Q Consensus 64 ~~~pESp~~l~~~~~~~~a~~~l~~i~~~~ 93 (164)
.+-.++|.|+ +-..+|.++.+.+++++.
T Consensus 17 P~~~~~P~W~--~~~~~eVe~~I~klakkG 44 (60)
T PF08069_consen 17 PYRRSPPSWL--KYSPEEVEELIVKLAKKG 44 (60)
T ss_dssp -S-SS--TT----S-HHHHHHHHHHHCCTT
T ss_pred CCCCCCCCCc--CCCHHHHHHHHHHHHHcC
Confidence 3456788897 445688888888887754
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=26.65 E-value=81 Score=14.60 Aligned_cols=18 Identities=11% Similarity=-0.001 Sum_probs=13.6
Q ss_pred HHhcCCHHHHHHHHHHHh
Q psy66 73 YASKGLVVKSSASLNWLR 90 (164)
Q Consensus 73 l~~~~~~~~a~~~l~~i~ 90 (164)
+...|+.++|.+.+++..
T Consensus 11 y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 11 YEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHTTSHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 356888999988877653
No 281
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=26.22 E-value=1.2e+02 Score=24.10 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=33.8
Q ss_pred hHHHH-HHHHH----HHHHHHHHHHhhcCCchHHH-HhcCCHHHHHHHHHHHhCCChhhHHHHHHH
Q psy66 44 HWQIV-CYFCA----ATACISFIIVTFMPETPAWY-ASKGLVVKSSASLNWLRNSSAIANAEIADI 103 (164)
Q Consensus 44 ~Wr~~-~~~~~----~~~~l~~~~~~~~pESp~~l-~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~ 103 (164)
+|... |.... +|.++.-....++-|--||. ....-+++.++++.++.+.+++....++.+
T Consensus 235 gW~F~eFflrm~PVt~PV~i~GlltC~LvEKfr~FGYGa~LP~~Vr~vL~~~d~~~~~krt~Qdk~ 300 (516)
T COG3067 235 GWHFGEFFLRMAPVTVPVLICGLLTCLLVEKFRWFGYGATLPEKVRQVLQQFDDQSRHKRTRQDKI 300 (516)
T ss_pred cccHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHhHHHHHhhhHHHHH
Confidence 88863 33333 33333333445566766665 344457888888888876554444444433
No 282
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=25.87 E-value=1.5e+02 Score=21.38 Aligned_cols=9 Identities=0% Similarity=0.069 Sum_probs=3.4
Q ss_pred hhHHHHHHH
Q psy66 95 IANAEIADI 103 (164)
Q Consensus 95 ~~~~~~~~~ 103 (164)
+.+..++|+
T Consensus 40 eik~Il~e~ 48 (226)
T COG4858 40 EIKIILEEM 48 (226)
T ss_pred HHHHHHHHH
Confidence 333333433
No 283
>KOG4040|consensus
Probab=25.41 E-value=1.2e+02 Score=21.15 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q psy66 44 HWQIVCYFCAATACISFIIVTFMPETPAWY 73 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l 73 (164)
.|..++.+.....-.+++.++|..|-|+|-
T Consensus 127 ~w~~~~mcl~g~~~~~l~~~y~~d~~p~yk 156 (186)
T KOG4040|consen 127 TWNSIVMCLRGLVPMALLAWYFTDEHPRYK 156 (186)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 788777766655555667778889988773
No 284
>KOG4112|consensus
Probab=25.20 E-value=1.9e+02 Score=18.30 Aligned_cols=21 Identities=10% Similarity=0.436 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhH
Q psy66 23 SLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 23 ~~~~~~~~~G~ll~~~~~~~~ 43 (164)
-..+....+|.+++.+.+...
T Consensus 26 r~~q~ilti~aiVg~i~Gf~~ 46 (101)
T KOG4112|consen 26 RFQQLILTIGAIVGFIYGFAQ 46 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888877
No 285
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=24.99 E-value=1.1e+02 Score=24.43 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=6.0
Q ss_pred hhhhhhccCchh
Q psy66 6 YVYVSEISLPAY 17 (164)
Q Consensus 6 ~~~i~E~~p~~~ 17 (164)
...+.|..-.++
T Consensus 256 ~~i~~E~~L~~Y 267 (374)
T PF01528_consen 256 YLIVIEVVLARY 267 (374)
T ss_pred HHHHHHHHHHHH
Confidence 344556654444
No 286
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.76 E-value=2.5e+02 Score=19.69 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=6.3
Q ss_pred hhccCchhHHHH
Q psy66 10 SEISLPAYRGLF 21 (164)
Q Consensus 10 ~E~~p~~~Rg~~ 21 (164)
.|+-|..+|...
T Consensus 4 q~idk~~YRk~~ 15 (165)
T PF11286_consen 4 QEIDKERYRKHL 15 (165)
T ss_pred eecCHHHHHHHH
Confidence 345566666443
No 287
>COG1422 Predicted membrane protein [Function unknown]
Probab=24.41 E-value=2.8e+02 Score=20.13 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=4.8
Q ss_pred HHHHHHHHhhc
Q psy66 56 ACISFIIVTFM 66 (164)
Q Consensus 56 ~~l~~~~~~~~ 66 (164)
++...+...++
T Consensus 58 gl~~~i~~~~l 68 (201)
T COG1422 58 GLYITILQKLL 68 (201)
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 288
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=24.05 E-value=26 Score=26.83 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHhH-------hHHH--HHHHHHHHHHHHHHHHhhcCCchHH
Q psy66 22 ASLGPVFVSLGVLFVYYAGYML-------HWQI--VCYFCAATACISFIIVTFMPETPAW 72 (164)
Q Consensus 22 ~~~~~~~~~~G~ll~~~~~~~~-------~Wr~--~~~~~~~~~~l~~~~~~~~pESp~~ 72 (164)
......+.+++.++.+++.... .+.. .|.++.+..++.++....++.+|.+
T Consensus 30 ~~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~~~~~l~~~~~~ 89 (309)
T PF01733_consen 30 TQAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCIILYFILPRSPFY 89 (309)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHHHHHHhccChHH
Confidence 3445555566655555554433 3333 3344444455555666667777643
No 289
>COG3057 SeqA Negative regulator of replication initiationR [DNA replication, recombination, and repair]
Probab=23.89 E-value=54 Score=22.56 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=16.0
Q ss_pred hcCCchHHHHhcCCHHHHHHHHHH
Q psy66 65 FMPETPAWYASKGLVVKSSASLNW 88 (164)
Q Consensus 65 ~~pESp~~l~~~~~~~~a~~~l~~ 88 (164)
-+|++|.|.+.+.+..+-...++.
T Consensus 139 ~iP~TPyWVITNtNtgRK~~M~e~ 162 (181)
T COG3057 139 HVPGTPYWVITNTNTGRKCSMIEH 162 (181)
T ss_pred cCCCCCeEEEecCCchhHHHHHHH
Confidence 478999998877776554444433
No 290
>PF11292 DUF3093: Protein of unknown function (DUF3093); InterPro: IPR021443 This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.
Probab=23.65 E-value=22 Score=24.24 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=6.1
Q ss_pred chHHHHhcCCHHH
Q psy66 69 TPAWYASKGLVVK 81 (164)
Q Consensus 69 Sp~~l~~~~~~~~ 81 (164)
+|+|+++..++|+
T Consensus 125 TPYWlvSTR~Pe~ 137 (143)
T PF11292_consen 125 TPYWLVSTRRPER 137 (143)
T ss_pred CceEEEeeCCHHH
Confidence 3445544444444
No 291
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=23.55 E-value=74 Score=18.24 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.2
Q ss_pred hhccCchhHHHHHhHHHHHHHH
Q psy66 10 SEISLPAYRGLFASLGPVFVSL 31 (164)
Q Consensus 10 ~E~~p~~~Rg~~~~~~~~~~~~ 31 (164)
--..|+++|-...++.+++|..
T Consensus 39 F~~vP~~~Rv~~~~~v~~~W~~ 60 (68)
T PF04117_consen 39 FRYVPPHYRVLFVNVVSFFWNT 60 (68)
T ss_pred hcccChhhhhhhhhhHHHHHHH
Confidence 3467999999888888877764
No 292
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=23.20 E-value=27 Score=27.28 Aligned_cols=10 Identities=50% Similarity=1.288 Sum_probs=8.5
Q ss_pred hhcCCchHHH
Q psy66 64 TFMPETPAWY 73 (164)
Q Consensus 64 ~~~pESp~~l 73 (164)
+.+||||||.
T Consensus 202 LsmPhSPRWh 211 (335)
T TIGR03032 202 LSMPHSPRWY 211 (335)
T ss_pred ccCCcCCcEe
Confidence 4589999996
No 293
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=22.64 E-value=4.3e+02 Score=21.55 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchH
Q psy66 48 VCYFCAATACISFIIVTFMPETPA 71 (164)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~~pESp~ 71 (164)
.|.++.+..++.++....++.+|.
T Consensus 177 YF~~a~~v~l~~i~~~~~l~k~~~ 200 (437)
T TIGR00939 177 YFGTPCVVQLICIVCYLLLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHH
Confidence 444444555555555666777763
No 294
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=22.54 E-value=1.8e+02 Score=19.16 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCchHH
Q psy66 44 HWQIVCYFCAATACISFIIVTFMPETPAW 72 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~~~~~~~~pESp~~ 72 (164)
+|+.--....+.+++.++..-.+.|.-+.
T Consensus 18 ~W~~~s~~~~~~sci~~f~lav~~e~L~~ 46 (144)
T PF04145_consen 18 SWKPSSAGAYVGSCIGVFLLAVLYEFLKA 46 (144)
T ss_dssp -------HHHHHHHHHHHHHHHHTTT---
T ss_pred CcEECCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67766555555555555555556665443
No 295
>PHA02585 16 small terminase protein; Provisional
Probab=22.54 E-value=1.9e+02 Score=19.96 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=23.6
Q ss_pred cCCchHHHHhcCCHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Q psy66 66 MPETPAWYASKGLVVKSSASLNWLRNSSAIANAEIADILQSI 107 (164)
Q Consensus 66 ~pESp~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~ 107 (164)
-.||||.+ +-+...++..+..+++..+...++++..
T Consensus 75 nSesPR~~------EVf~~Lm~qm~~~nk~Ll~lhK~MK~it 110 (161)
T PHA02585 75 NSESPRHV------EVFATLMGQMTNTNKEILKIHKEMKDIT 110 (161)
T ss_pred ccCCchHH------HHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 47888864 5556667777766666666666666653
No 296
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=22.54 E-value=1.5e+02 Score=18.75 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCchHHHHhcC
Q psy66 44 HWQIVCYFCAATACISFIIVTFMPETPAWYASKG 77 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l~~~~ 77 (164)
-|+.+.++..+...++..+--+.+|.|--.++..
T Consensus 6 ~WKyllil~vl~~~~lyALPnlyge~pAvqIs~~ 39 (101)
T PF13721_consen 6 LWKYLLILVVLLLGALYALPNLYGEDPAVQISAS 39 (101)
T ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCcEEEecC
Confidence 5888877665544444333445688887666553
No 297
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=22.52 E-value=4.2e+02 Score=21.46 Aligned_cols=61 Identities=10% Similarity=-0.004 Sum_probs=44.3
Q ss_pred cCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q psy66 13 SLPAYRGLFASLGPVFVSLGVLFVYYAGYML-HWQIVCYFCAATACISFIIVTFMPETPAWY 73 (164)
Q Consensus 13 ~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-~Wr~~~~~~~~~~~l~~~~~~~~pESp~~l 73 (164)
..+.+-|...++.+.....+.+++|.+..-. |=|...........+-++...+.|.+-.|+
T Consensus 240 ~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~l 301 (395)
T COG2807 240 LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPIL 301 (395)
T ss_pred CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4566778888899999999999999988755 666666666666666666666777765444
No 298
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=21.53 E-value=3.4e+02 Score=19.99 Aligned_cols=12 Identities=8% Similarity=-0.045 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHH
Q psy66 44 HWQIVCYFCAAT 55 (164)
Q Consensus 44 ~Wr~~~~~~~~~ 55 (164)
++|-.+.+....
T Consensus 66 ~y~~~~~It~~l 77 (251)
T COG5415 66 GYRPYLVITALL 77 (251)
T ss_pred ccchhHHHHHHH
Confidence 445555444443
No 299
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=21.41 E-value=1.6e+02 Score=18.65 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=16.4
Q ss_pred cCchhHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy66 13 SLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVC 49 (164)
Q Consensus 13 ~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~~Wr~~~ 49 (164)
.|....+.......++.++|.++-+.+.. -||...
T Consensus 35 LP~~l~~~~aai~MIf~Gi~lMlPAav~i--vWR~a~ 69 (96)
T PF07214_consen 35 LPAPLSTPTAAIAMIFVGIGLMLPAAVNI--VWRVAK 69 (96)
T ss_pred CcccccCchHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 34444555555555555555444333222 555544
No 300
>PRK10621 hypothetical protein; Provisional
Probab=20.87 E-value=3.6e+02 Score=20.05 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=15.4
Q ss_pred hccCchhHHHHHhHHHHHHHHHHHHHHHHHHhHhHHH
Q psy66 11 EISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQI 47 (164)
Q Consensus 11 E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~~Wr~ 47 (164)
.+..++.+++.. .......++.+.........+|..
T Consensus 173 ~~~~~~a~~ts~-~~~~~~~~~~~~~~~~~G~v~~~~ 208 (266)
T PRK10621 173 GFNLAKATAHAK-VLNATSNIGGLLLFILGGKVIWAT 208 (266)
T ss_pred CCCHHHHHHHHH-HHHHHHHHHHHHHHHhCCeehHHH
Confidence 444445555433 333334444443333333336654
No 301
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=20.59 E-value=1.2e+02 Score=14.59 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=11.5
Q ss_pred HHhcCCHHHHHHHHHH
Q psy66 73 YASKGLVVKSSASLNW 88 (164)
Q Consensus 73 l~~~~~~~~a~~~l~~ 88 (164)
+...|+.++|.+..++
T Consensus 9 ~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 9 YRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHCT-HHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHH
Confidence 4578889999887765
No 302
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=20.53 E-value=2.3e+02 Score=17.71 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy66 44 HWQIVCYFCAATACISFIIV 63 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~~~~~ 63 (164)
-||.+..++.+.+.++.+..
T Consensus 43 ~wRalSii~FI~giil~lG~ 62 (92)
T PF05767_consen 43 TWRALSIICFILGIILTLGI 62 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 79999999998877765543
No 303
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.33 E-value=2.8e+02 Score=18.65 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=18.4
Q ss_pred chhHHHHH-----hHHHHHHHHHHHHHHHHHHhH
Q psy66 15 PAYRGLFA-----SLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 15 ~~~Rg~~~-----~~~~~~~~~G~ll~~~~~~~~ 43 (164)
++.|.+++ .+.+.-..+|.++||++.+..
T Consensus 14 ~~~r~waml~hls~llglllpfg~llGPlivW~~ 47 (143)
T COG3296 14 RESRDWAMLAHLSALLGLLLPFGSLLGPLIVWLL 47 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666554 234444457888888887766
No 304
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=20.27 E-value=4.2e+02 Score=20.54 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=24.6
Q ss_pred chhHHHHHh-HHHHHHHHHHHHHHHHHHhHhHHHH
Q psy66 15 PAYRGLFAS-LGPVFVSLGVLFVYYAGYMLHWQIV 48 (164)
Q Consensus 15 ~~~Rg~~~~-~~~~~~~~G~ll~~~~~~~~~Wr~~ 48 (164)
.+.||.+.- +.-...++|.+++.++..+.+|.++
T Consensus 153 lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~w~~~ 187 (296)
T COG1230 153 LNMRGAYLHVLGDALGSVGVIIAAIVIRFTGWSWL 187 (296)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 456666664 4667778888888888777788873
Done!