Query psy66
Match_columns 164
No_of_seqs 116 out of 1338
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 22:14:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy66.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/66hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.7 2.3E-16 7.9E-21 124.8 14.6 90 3-92 145-246 (491)
2 1pw4_A Glycerol-3-phosphate tr 98.5 1.8E-07 6E-12 72.7 5.7 71 3-73 138-214 (451)
3 2gfp_A EMRD, multidrug resista 98.3 6.7E-07 2.3E-11 68.1 5.0 69 4-72 108-181 (375)
4 3o7q_A L-fucose-proton symport 98.1 1E-05 3.6E-10 62.5 8.0 70 3-72 136-237 (438)
5 4aps_A DI-OR tripeptide H+ sym 97.7 0.0006 2.1E-08 53.4 11.9 60 3-62 127-192 (491)
6 4gc0_A D-xylose-proton symport 97.5 0.00016 5.6E-09 56.6 6.2 68 3-70 389-467 (491)
7 2xut_A Proton/peptide symporte 97.1 0.00093 3.2E-08 52.8 6.0 62 3-64 128-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 96.3 0.0083 2.8E-07 46.1 6.5 60 5-64 367-431 (451)
9 2cfq_A Lactose permease; trans 95.8 0.009 3.1E-07 46.0 4.3 66 6-71 334-405 (417)
10 4aps_A DI-OR tripeptide H+ sym 95.7 0.01 3.5E-07 46.3 4.5 67 3-69 405-475 (491)
11 2xut_A Proton/peptide symporte 94.7 0.026 8.9E-07 44.5 3.9 40 4-43 425-464 (524)
12 2gfp_A EMRD, multidrug resista 86.8 0.42 1.5E-05 35.6 2.9 48 3-51 310-361 (375)
13 3o7q_A L-fucose-proton symport 86.1 1 3.4E-05 34.2 4.8 58 4-63 367-429 (438)
14 2cfq_A Lactose permease; trans 85.4 0.04 1.4E-06 42.4 -3.5 54 17-70 135-192 (417)
15 3sk7_A Protein SEQA; sequestra 64.3 3.5 0.00012 26.0 1.9 26 65-90 74-99 (116)
16 3bu8_A Telomeric repeat-bindin 60.3 34 0.0012 24.2 6.4 49 74-123 125-173 (235)
17 1j3e_A SEQA protein; protein-D 55.9 5.6 0.00019 25.1 1.7 26 65-90 73-98 (115)
18 3bqo_A Telomeric repeat-bindin 46.9 33 0.0011 23.9 4.5 20 74-93 128-147 (211)
19 1lrr_A SEQA protein; protein-D 46.9 7 0.00024 25.2 1.1 26 65-90 89-114 (131)
20 3fmt_A Protein SEQA; protein-D 42.1 8.6 0.00029 25.7 1.0 26 65-90 120-145 (162)
21 2nxp_A Transcription initiatio 40.8 41 0.0014 22.1 4.3 33 73-105 64-97 (156)
22 2fyu_K Ubiquinol-cytochrome C 32.1 63 0.0022 17.4 5.2 38 12-49 5-42 (56)
23 2j4b_A TAF5, transcription ini 28.3 68 0.0023 20.6 3.6 20 73-92 45-64 (138)
24 3rkv_A Putative peptidylprolyl 27.6 1.1E+02 0.0038 18.9 4.7 22 74-95 108-129 (162)
25 3im4_C Dual specificity A kina 25.3 28 0.00095 17.7 1.0 18 69-88 2-19 (45)
26 1v54_G Cytochrome C oxidase po 23.8 98 0.0033 18.2 3.4 21 44-64 15-35 (85)
27 1zl8_A LIN-7; heterodimer, alp 22.4 97 0.0033 16.3 2.8 28 78-105 8-35 (53)
28 4h33_A LMO2059 protein; bilaye 21.8 1.6E+02 0.0054 18.6 4.5 15 11-25 62-76 (137)
29 3bee_A Putative YFRE protein; 21.4 93 0.0032 18.0 3.1 21 74-94 54-74 (93)
30 3mnf_A PAC2 family protein; PS 20.1 89 0.0031 22.2 3.3 27 64-90 177-203 (250)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.71 E-value=2.3e-16 Score=124.76 Aligned_cols=90 Identities=21% Similarity=0.451 Sum_probs=83.5
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH------------hHHHHHHHHHHHHHHHHHHHhhcCCch
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML------------HWQIVCYFCAATACISFIIVTFMPETP 70 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~------------~Wr~~~~~~~~~~~l~~~~~~~~pESp 70 (164)
+++++|++|++|+++||+..++.+.++.+|.++++.++... +||+++.+..+++++.++..+++||||
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp 224 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESP 224 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCCh
Confidence 46789999999999999999999999999999999988755 799999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhCC
Q psy66 71 AWYASKGLVVKSSASLNWLRNS 92 (164)
Q Consensus 71 ~~l~~~~~~~~a~~~l~~i~~~ 92 (164)
|||..|++.|++++.+++..++
T Consensus 225 ~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 225 RWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCchhHHHHhHHHhcCC
Confidence 9999999999999999988764
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.47 E-value=1.8e-07 Score=72.69 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=59.9
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h-HHHHHHHHHHHHHHHH-HHHhhcCCchHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H-WQIVCYFCAATACISF-IIVTFMPETPAWY 73 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~-Wr~~~~~~~~~~~l~~-~~~~~~pESp~~l 73 (164)
+....++.|+.|+++|++..++.+.+..+|.++++.++... + ||+.+++.+++.++.. +..+++||+|+..
T Consensus 138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (451)
T 1pw4_A 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC 214 (451)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence 34567899999999999999999999999999999998764 7 9999999888766654 4557789998764
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.30 E-value=6.7e-07 Score=68.06 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=58.8
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHH-HHhhcCCchHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFI-IVTFMPETPAW 72 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~-~~~~~pESp~~ 72 (164)
....++.|+.|+++|++..+..+.+..+|.++++.++... +||+.+.+.++..++..+ ..+++||+|+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 4567889999999999999999999999999999998877 899999988887766655 45678998754
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.10 E-value=1e-05 Score=62.46 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=55.5
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH-----h-------------------------HHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML-----H-------------------------WQIVCYFC 52 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~-----~-------------------------Wr~~~~~~ 52 (164)
+....++.|+.|+++|++..++.+.+..+|.++++.++..+ + ||+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 215 (438)
T 3o7q_A 136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII 215 (438)
T ss_dssp HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence 35678899999999999999999999999999999998766 2 99999877
Q ss_pred HHHHHHHHHHH--hhcCCchHH
Q psy66 53 AATACISFIIV--TFMPETPAW 72 (164)
Q Consensus 53 ~~~~~l~~~~~--~~~pESp~~ 72 (164)
+++.++..+.. ...||+++.
T Consensus 216 ~~~~~~~~~~~~~~~~p~~~~~ 237 (438)
T 3o7q_A 216 VAIVLLVALLIMLTKFPALQSD 237 (438)
T ss_dssp HHHHHHHHHHHHHCCCCCCTTT
T ss_pred HHHHHHHHHHHHHHcCCccccc
Confidence 76655544333 336888763
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.70 E-value=0.0006 Score=53.45 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=48.9
Q ss_pred ccchhhhhhccCchh--HHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHH
Q psy66 3 SSTYVYVSEISLPAY--RGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFII 62 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~--Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~ 62 (164)
+..+.++.|+.|+++ |+...+..+.+..+|..+++.++..+ +||+.+++.++..++..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 356778999999988 77788888899999999999998776 9999999887765554443
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.51 E-value=0.00016 Score=56.63 Aligned_cols=68 Identities=24% Similarity=0.296 Sum_probs=47.0
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----------hHHHHHHHHHHHHHHHH-HHHhhcCCch
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----------HWQIVCYFCAATACISF-IIVTFMPETP 70 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----------~Wr~~~~~~~~~~~l~~-~~~~~~pESp 70 (164)
++..+|.+|+.|.+.|+...++......+|.++++.+.-.. ++...+++-+..+++.. +..+++|||.
T Consensus 389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 34567899999999999999998888888877766554322 33344555555555544 4457799983
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.07 E-value=0.00093 Score=52.84 Aligned_cols=62 Identities=6% Similarity=0.007 Sum_probs=50.0
Q ss_pred ccchhhhhhccCchhHHHHHhH---HHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHh
Q psy66 3 SSTYVYVSEISLPAYRGLFASL---GPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIVT 64 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~---~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~ 64 (164)
+..+.++.|+.|+++|++..+. .+.+..+|.++++.++..+ +||+.+.+.++..++..+..+
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999877766 8888999999999987766 899999988877665554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.35 E-value=0.0083 Score=46.13 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=49.9
Q ss_pred chhhhhhccCchhHHHHHhHHHHHHHH-HHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHh
Q psy66 5 TYVYVSEISLPAYRGLFASLGPVFVSL-GVLFVYYAGYML----HWQIVCYFCAATACISFIIVT 64 (164)
Q Consensus 5 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~-G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~~ 64 (164)
...++.|..|++.||...++.+....+ |..+++.+...+ +|+..+++.++..++..+..+
T Consensus 367 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 367 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999999999 999999888766 889888887777666655544
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.79 E-value=0.009 Score=46.05 Aligned_cols=66 Identities=11% Similarity=0.044 Sum_probs=48.7
Q ss_pred hhhhhhccCchhHHHHHhH-HHHHHHHHHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHH-hhcCCchH
Q psy66 6 YVYVSEISLPAYRGLFASL-GPVFVSLGVLFVYYAGYML----HWQIVCYFCAATACISFIIV-TFMPETPA 71 (164)
Q Consensus 6 ~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~ll~~~~~~~~----~Wr~~~~~~~~~~~l~~~~~-~~~pESp~ 71 (164)
..++.|..|++.||...+. .+....+|..+++.++..+ ++...+.+.++..++..+.. .+.||.++
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 4688999999999998877 4777788888888887765 77778877777666555443 44566543
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=95.71 E-value=0.01 Score=46.34 Aligned_cols=67 Identities=7% Similarity=-0.004 Sum_probs=47.5
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHH-hhcCCc
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIV-TFMPET 69 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~-~~~pES 69 (164)
+....++.|..|++.||...++.+....+|..+++.+.... +....+.+.++..++..+.. .+.++.
T Consensus 405 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 405 PVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp THHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999998766 44555555555544444333 333443
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=94.71 E-value=0.026 Score=44.45 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=35.4
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML 43 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~ 43 (164)
....++.|.+|++.||...++.+....+|..+++.+....
T Consensus 425 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~ 464 (524)
T 2xut_A 425 TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV 464 (524)
T ss_dssp HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999999988766
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=86.76 E-value=0.42 Score=35.63 Aligned_cols=48 Identities=13% Similarity=-0.069 Sum_probs=38.6
Q ss_pred ccchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----hHHHHHHH
Q psy66 3 SSTYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----HWQIVCYF 51 (164)
Q Consensus 3 ~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~Wr~~~~~ 51 (164)
+....++.|..| ++||+..++.+....+|..+++.+.... +|+..+.+
T Consensus 310 ~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 310 PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp STTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 456678899998 8999999999999999999888887665 56655554
No 13
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=86.09 E-value=1 Score=34.18 Aligned_cols=58 Identities=10% Similarity=-0.089 Sum_probs=38.7
Q ss_pred cchhhhhhccCchhHHHHHhHHHHHHHHHHHHHHHHHHhH----h-HHHHHHHHHHHHHHHHHHH
Q psy66 4 STYVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYML----H-WQIVCYFCAATACISFIIV 63 (164)
Q Consensus 4 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~----~-Wr~~~~~~~~~~~l~~~~~ 63 (164)
....+..|..|++ |+...++.. ...+|..+++.+...+ + ++..+.+..+..++.++..
T Consensus 367 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3o7q_A 367 TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_dssp HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3455668888877 777777666 4457888888887666 5 8877776655544444333
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=85.39 E-value=0.04 Score=42.38 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=33.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHhH---hHHHHHHHHHHHHHHHHHHHhhc-CCch
Q psy66 17 YRGLFASLGPVFVSLGVLFVYYAGYML---HWQIVCYFCAATACISFIIVTFM-PETP 70 (164)
Q Consensus 17 ~Rg~~~~~~~~~~~~G~ll~~~~~~~~---~Wr~~~~~~~~~~~l~~~~~~~~-pESp 70 (164)
.|+...+....+..+|..+++.++... +||..+++..++.++..+..++. ||+|
T Consensus 135 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 192 (417)
T 2cfq_A 135 RSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAP 192 (417)
T ss_dssp HHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCS
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 444444444455566666677666555 79999988877765555555454 4443
No 15
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=64.33 E-value=3.5 Score=26.02 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=20.1
Q ss_pred hcCCchHHHHhcCCHHHHHHHHHHHh
Q psy66 65 FMPETPAWYASKGLVVKSSASLNWLR 90 (164)
Q Consensus 65 ~~pESp~~l~~~~~~~~a~~~l~~i~ 90 (164)
-+|+||.|.+.+++..+-+..++.+-
T Consensus 74 ~Ip~TpfWViTN~NT~rKr~ml~~vm 99 (116)
T 3sk7_A 74 AIPNTPFWVITNNNTSRKQQMVEQVM 99 (116)
T ss_dssp ECTTSSCEECCCSCHHHHHHHHHHHH
T ss_pred cCCCCCeeEEeCCCcHHHHHHHHHHH
Confidence 47999999999998877666665553
No 16
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=60.34 E-value=34 Score=24.20 Aligned_cols=49 Identities=16% Similarity=0.071 Sum_probs=28.7
Q ss_pred HhcCCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhhhhcccchhhhhhc
Q psy66 74 ASKGLVVKSSASLNWLRNSSAIANAEIADILQSISEREDDKKSCGQTLRE 123 (164)
Q Consensus 74 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (164)
+.+|..++|.++++++.+++.....-...+.....++ ...+.+.+.|+-
T Consensus 125 iek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K-d~~H~~lqnFSy 173 (235)
T 3bu8_A 125 IKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK-NLAHPVIQNFSY 173 (235)
T ss_dssp HHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT-CTTSHHHHTCCH
T ss_pred HHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc-CcccHHHHhccH
Confidence 5688999999999999887544433333333333332 233444444443
No 17
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=55.95 E-value=5.6 Score=25.09 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=19.7
Q ss_pred hcCCchHHHHhcCCHHHHHHHHHHHh
Q psy66 65 FMPETPAWYASKGLVVKSSASLNWLR 90 (164)
Q Consensus 65 ~~pESp~~l~~~~~~~~a~~~l~~i~ 90 (164)
-+|+||.|-+.+++..+-+..++.+-
T Consensus 73 ~Ip~TpfWViTN~NT~rKr~ml~~vm 98 (115)
T 1j3e_A 73 HVPGTPYWVITNTNTGRKCSMIEHIM 98 (115)
T ss_dssp ECTTSSCEECCCSCHHHHHHHHHHHH
T ss_pred cCCCCCeeeeecCChHHHHHHHHHHH
Confidence 37999999999888877666665553
No 18
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=46.89 E-value=33 Score=23.92 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=14.1
Q ss_pred HhcCCHHHHHHHHHHHhCCC
Q psy66 74 ASKGLVVKSSASLNWLRNSS 93 (164)
Q Consensus 74 ~~~~~~~~a~~~l~~i~~~~ 93 (164)
+.+|..++|.++++++.+++
T Consensus 128 iekg~Fk~A~eiLkr~f~~~ 147 (211)
T 3bqo_A 128 MENGNFKEAEEVFERIFGDP 147 (211)
T ss_dssp HHTTCHHHHHHHHHHHC---
T ss_pred HHccchHHHHHHHHHHhcCC
Confidence 46888889999999877643
No 19
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=46.88 E-value=7 Score=25.20 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=20.0
Q ss_pred hcCCchHHHHhcCCHHHHHHHHHHHh
Q psy66 65 FMPETPAWYASKGLVVKSSASLNWLR 90 (164)
Q Consensus 65 ~~pESp~~l~~~~~~~~a~~~l~~i~ 90 (164)
-+|+||.|-+.+++..+-+..++.+-
T Consensus 89 ~Ip~TpfWViTN~NT~rKr~ml~~vm 114 (131)
T 1lrr_A 89 HVPGTPYWVITNTNTGRKCSMIEHIM 114 (131)
T ss_dssp ECTTSSCEECCCCCHHHHHHHHHHHH
T ss_pred cCCCCCeEEEecCChHHHHHHHHHHH
Confidence 37999999999988877666665553
No 20
>3fmt_A Protein SEQA; protein-DNA complex, hemimethylated GATC, DNA replication; HET: 6MA; 2.98A {Escherichia coli}
Probab=42.14 E-value=8.6 Score=25.72 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=20.1
Q ss_pred hcCCchHHHHhcCCHHHHHHHHHHHh
Q psy66 65 FMPETPAWYASKGLVVKSSASLNWLR 90 (164)
Q Consensus 65 ~~pESp~~l~~~~~~~~a~~~l~~i~ 90 (164)
-+|+||.|.+.+++..+-+..+..+-
T Consensus 120 ~Ip~TpfWViTN~NT~rKr~ml~~vm 145 (162)
T 3fmt_A 120 HVPGTPYWVITNTNTGRKCSMIEHIM 145 (162)
T ss_dssp ECTTSSCEEECCSCHHHHHHHHHHHH
T ss_pred cCCCCCeeEEecCCcHHHHHHHHHHH
Confidence 47999999999998877666665553
No 21
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=40.76 E-value=41 Score=22.12 Aligned_cols=33 Identities=0% Similarity=-0.031 Sum_probs=23.4
Q ss_pred HHhcCCHHHHHHHHHHHhCC-ChhhHHHHHHHHH
Q psy66 73 YASKGLVVKSSASLNWLRNS-SAIANAEIADILQ 105 (164)
Q Consensus 73 l~~~~~~~~a~~~l~~i~~~-~~~~~~~~~~~~~ 105 (164)
|+.+|..++|++-+++.++. +....+++..+..
T Consensus 64 Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~ 97 (156)
T 2nxp_A 64 LVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSS 97 (156)
T ss_dssp HHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhc
Confidence 57889999999999999864 3444555555443
No 22
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=32.07 E-value=63 Score=17.42 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=22.5
Q ss_pred ccCchhHHHHHhHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy66 12 ISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQIVC 49 (164)
Q Consensus 12 ~~p~~~Rg~~~~~~~~~~~~G~ll~~~~~~~~~Wr~~~ 49 (164)
...+++...+....-.....|...+-.+-+..+||.++
T Consensus 5 ~~g~~~~~~~~~w~psa~~~Gaaa~v~~ly~tdwr~IL 42 (56)
T 2fyu_K 5 FLGPRYRQLARNWVPTASLWGAVGAVGLVWATDWRLIL 42 (56)
T ss_dssp GCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred cccHhHHHHHHHHhhhhhhhhhhhhhheeeeccHHHHH
Confidence 45566666666666666666665544444444888643
No 23
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=28.27 E-value=68 Score=20.62 Aligned_cols=20 Identities=5% Similarity=0.018 Sum_probs=17.2
Q ss_pred HHhcCCHHHHHHHHHHHhCC
Q psy66 73 YASKGLVVKSSASLNWLRNS 92 (164)
Q Consensus 73 l~~~~~~~~a~~~l~~i~~~ 92 (164)
++.+|..++|++-+++.++.
T Consensus 45 Lv~~g~~~~A~~F~~~f~~~ 64 (138)
T 2j4b_A 45 LIQQNKTDEAKEFFEKYRGD 64 (138)
T ss_dssp HHHTTCHHHHHHHHHHHGGG
T ss_pred HHHCCChHHHHHHHHHHhHH
Confidence 57889999999999999864
No 24
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=27.60 E-value=1.1e+02 Score=18.93 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=15.7
Q ss_pred HhcCCHHHHHHHHHHHhCCChh
Q psy66 74 ASKGLVVKSSASLNWLRNSSAI 95 (164)
Q Consensus 74 ~~~~~~~~a~~~l~~i~~~~~~ 95 (164)
...|+.++|.+.+++.-..+++
T Consensus 108 ~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 108 IAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhcHHHHHHHHHHHHhcCCC
Confidence 4578899999988877654333
No 25
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=25.26 E-value=28 Score=17.70 Aligned_cols=18 Identities=22% Similarity=0.637 Sum_probs=4.6
Q ss_pred chHHHHhcCCHHHHHHHHHH
Q psy66 69 TPAWYASKGLVVKSSASLNW 88 (164)
Q Consensus 69 Sp~~l~~~~~~~~a~~~l~~ 88 (164)
||+|. .++.++|++-+.|
T Consensus 2 ~~K~V--~~~~D~aqEEMAW 19 (45)
T 3im4_C 2 SPEFV--QGNTDEAQEELAW 19 (45)
T ss_dssp -----------CHHHHHHHH
T ss_pred CCccc--cCCchHHHHHHHH
Confidence 67775 3445556554443
No 26
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=23.81 E-value=98 Score=18.24 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q psy66 44 HWQIVCYFCAATACISFIIVT 64 (164)
Q Consensus 44 ~Wr~~~~~~~~~~~l~~~~~~ 64 (164)
-||-+.++.++|++++..+-.
T Consensus 15 ~Wkkis~~va~P~v~l~~~n~ 35 (85)
T 1v54_G 15 TWRFLTFGLALPSVALCTLNS 35 (85)
T ss_dssp HHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999877655443
No 27
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=22.39 E-value=97 Score=16.33 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHhCCChhhHHHHHHHHH
Q psy66 78 LVVKSSASLNWLRNSSAIANAEIADILQ 105 (164)
Q Consensus 78 ~~~~a~~~l~~i~~~~~~~~~~~~~~~~ 105 (164)
+..+|.+.++++.+.....+..+..++.
T Consensus 8 Dv~RaiELle~lq~sgevp~~KL~aLq~ 35 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNNAKLASLQQ 35 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 5678888888887765555555555444
No 28
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=21.79 E-value=1.6e+02 Score=18.60 Aligned_cols=15 Identities=13% Similarity=-0.099 Sum_probs=6.9
Q ss_pred hccCchhHHHHHhHH
Q psy66 11 EISLPAYRGLFASLG 25 (164)
Q Consensus 11 E~~p~~~Rg~~~~~~ 25 (164)
|+.|...-|+..+..
T Consensus 62 Di~P~t~~gr~~~~~ 76 (137)
T 4h33_A 62 DIVPVTPIGRILASI 76 (137)
T ss_dssp SSCCCSHHHHHHHHH
T ss_pred CCCCCCHhHHHHHHH
Confidence 455555444444433
No 29
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=21.44 E-value=93 Score=17.99 Aligned_cols=21 Identities=10% Similarity=-0.122 Sum_probs=14.1
Q ss_pred HhcCCHHHHHHHHHHHhCCCh
Q psy66 74 ASKGLVVKSSASLNWLRNSSA 94 (164)
Q Consensus 74 ~~~~~~~~a~~~l~~i~~~~~ 94 (164)
...|++++|.+.++++-..++
T Consensus 54 ~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 54 FISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp HHTTCHHHHHHHHHHHHTCCC
T ss_pred HHcCCHHHHHHHHHHHHhhCC
Confidence 457777777777777765443
No 30
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.97A {Streptomyces avermitilis}
Probab=20.14 E-value=89 Score=22.23 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=21.1
Q ss_pred hhcCCchHHHHhcCCHHHHHHHHHHHh
Q psy66 64 TFMPETPAWYASKGLVVKSSASLNWLR 90 (164)
Q Consensus 64 ~~~pESp~~l~~~~~~~~a~~~l~~i~ 90 (164)
-++.|+|.|+....+++.|...++.+.
T Consensus 177 ~l~~~vp~Y~~~~pdP~AA~~lL~~l~ 203 (250)
T 3mnf_A 177 SLWAAVPHYVSQPPNPKATLALLNRLE 203 (250)
T ss_dssp EEEEEEEGGGCCSCCHHHHHHHHHHHH
T ss_pred EEEEeCCccccCCCCHHHHHHHHHHHH
Confidence 356899999887788888887766665
Done!