RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy66
(164 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.024
Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 36/147 (24%)
Query: 21 FASLGPVFVSLGVLFVYYAGYMLHWQIVC------------YFCAATACISFIIV-TFMP 67
S + +S ++ V + H+ + Y AT ++ +
Sbjct: 231 LLS---IPISCPLIGVIQ---LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 68 ETPAWYASKGLVVKSSASLNW--LRNSSAIANAEI-ADILQSISEREDDKKSCGQTLREF 124
ET +W + V K+ L + +R A N + IL+ E E
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN-----------EG 333
Query: 125 TPIRILTTRNV--ASLQCSIENSCNQR 149
P +L+ N+ +Q + N
Sbjct: 334 VPSPMLSISNLTQEQVQDYVN-KTNSH 359
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.25
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 24/108 (22%)
Query: 53 AATACISFIIVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIAN---AEIADILQSISE 109
A C+S+ + M W + L L+ + +D +I
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 110 REDDKKSCGQTLREFTPIR-------ILTTRNVAS--------LQCSI 142
R + LR + +L NV + L C I
Sbjct: 226 RIHSIQ---AELRRLLKSKPYENCLLVL--LNVQNAKAWNAFNLSCKI 268
Score = 26.7 bits (58), Expect = 4.1
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 19/73 (26%)
Query: 93 SAIANAEIADILQSISEREDDKKSCGQTLREFTPIRILTTRNVAS------------LQC 140
S ++ EI I+ S TLR F + V L
Sbjct: 44 SILSKEEIDHIIMSKDAVS-------GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 141 SIENSCNQRAIAT 153
I+ Q ++ T
Sbjct: 97 PIKTEQRQPSMMT 109
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 28.3 bits (64), Expect = 1.1
Identities = 13/88 (14%), Positives = 20/88 (22%), Gaps = 17/88 (19%)
Query: 25 GPVFVSLG---VLFVYYAGYMLHWQIVCYFCAATACISFIIVTFMPETPAWYASKGLVVK 81
+++G + + YFC Y G V
Sbjct: 253 DHCALNVGTSGAIRTIVDQPKIDPS-ASYFCYPA-------------DKTHYLLGGPVNN 298
Query: 82 SSASLNWLRNSSAIANAEIADILQSISE 109
NW R + A+ D L
Sbjct: 299 GGIVFNWARQTLFDADETPQDFLDVAQT 326
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase;
2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A
3ih9_A 3iha_A* 3ihb_A 2dfw_A
Length = 456
Score = 26.7 bits (58), Expect = 5.0
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 139 QCSIENSCNQRAIATGYL 156
QC++ + A+ L
Sbjct: 194 QCAVLVTVKDLAVMGACL 211
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 26.3 bits (57), Expect = 6.3
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 139 QCSIENSCNQRAIATGYL 156
CSIE +C ++ L
Sbjct: 347 LCSIEVTCESASVMAATL 364
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 25.8 bits (55), Expect = 7.6
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 2/62 (3%)
Query: 6 YVYVSEISLPAYRGLFASLGPVFVSLGVLFVYYAGYMLHWQI--VCYFCAATACISFIIV 63
+ V LP + VS F Y Y++ + C +C + +
Sbjct: 85 ALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTTAIILVAGLG 144
Query: 64 TF 65
Sbjct: 145 LV 146
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA
binding, RNA binding protein; 1.80A {Thermus
thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s*
1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V
2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W
2wdj_W ...
Length = 110
Score = 24.8 bits (55), Expect = 8.2
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 13/38 (34%)
Query: 62 IVTFMPETPAWYASKGLVVKSSASLNWLRNSSAIANAE 99
I+ + + A++ +K V++S A ANA
Sbjct: 35 ILRYTNKRGAYFVAK--VLES-----------AAANAV 59
>3rce_A Oligosaccharide transferase to N-glycosylate PROT;
oligosaccharyltransferase, membrane protein, helical
bundle, glycosylation, acceptor peptide, plasma
membrane; HET: PPN; 3.40A {Campylobacter lari}
Length = 724
Score = 25.8 bits (55), Expect = 9.7
Identities = 6/43 (13%), Positives = 11/43 (25%)
Query: 24 LGPVFVSLGVLFVYYAGYMLHWQIVCYFCAATACISFIIVTFM 66
+ F SL V+ + + A I+
Sbjct: 106 MSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRT 148
>1mki_A Probable glutaminase YBGJ; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG, hydrolase; HET: SEP; 2.00A {Bacillus
subtilis} SCOP: e.3.1.2 PDB: 2osu_A* 3brm_A* 3agf_A
Length = 330
Score = 25.4 bits (55), Expect = 10.0
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 139 QCSIENSCNQRAIATGYLC 157
QC++E++ A+ L
Sbjct: 207 QCAMESTTEDIALIGLILA 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.135 0.423
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,419,193
Number of extensions: 125280
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 20
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.6 bits)