RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy66
         (164 letters)



>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8
           kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 25.1 bits (55), Expect = 2.0
 Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 8/41 (19%)

Query: 97  NAEIADILQSISEREDDKKSCGQTLREFTPIRILTTRNVAS 137
           N  I D+L  ++  E +              +    R  AS
Sbjct: 3   NGGITDMLTELANFEKNVSQ--------AIHKYNAYRKAAS 35


>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 328

 Score = 25.6 bits (56), Expect = 3.2
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 139 QCSIENSCNQRAIATGYLC 157
           QC++E++    A+    L 
Sbjct: 205 QCAMESTTEDIALIGLILA 223


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 599,744
Number of extensions: 24902
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 4
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (22.8 bits)