BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6601
         (459 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YRT|A Chain A, Solution Structure Of The Chord Domain Of Human Chord-
           Containing Protein 1
          Length = 75

 Score = 72.8 bits (177), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 41/69 (59%)

Query: 78  SSSIPLGTKCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLE 137
           S S  +   C N  C Q ++   +    C +H GVPVFH+ LK WSCC ++TT+FS FL 
Sbjct: 3   SGSSGMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLS 62

Query: 138 QEGCTHGQH 146
             GCT G+H
Sbjct: 63  IVGCTKGRH 71



 Score = 58.9 bits (141), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 379 SSSIPLGTKCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFS 434
           S S  +   C N  C Q ++   +    C +H GVPVFH+ LK WSCC ++TT+FS
Sbjct: 3   SGSSGMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFS 58


>pdb|2XCM|E Chain E, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
           Domain
 pdb|2XCM|F Chain F, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2
           Domain
          Length = 74

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 87  CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
           CKN  C Q+++  ++  T C HH G  VFH+ L+ W CC     EF  F+E   CT G H
Sbjct: 12  CKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWH 71



 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEF 433
           CKN  C Q+++  ++  T C HH G  VFH+ L+ W CC     EF
Sbjct: 12  CKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEF 57


>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
 pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
          Length = 421

 Score = 31.6 bits (70), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 211 LDTAEKGQVKCRLDWFQTGSTVVVSIFGKKYDPLRSKV 248
           L++  +G ++  +D F TG  VV+S+ G  +D L  K+
Sbjct: 163 LNSFNEGMLRHYMDRFYTGDYVVISVAGNVHDELIDKI 200


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,905,579
Number of Sequences: 62578
Number of extensions: 573978
Number of successful extensions: 901
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 896
Number of HSP's gapped (non-prelim): 5
length of query: 459
length of database: 14,973,337
effective HSP length: 102
effective length of query: 357
effective length of database: 8,590,381
effective search space: 3066766017
effective search space used: 3066766017
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)