BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6601
(459 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VCC0|CHRD1_DROME Cysteine and histidine-rich domain-containing protein OS=Drosophila
melanogaster GN=CHORD PE=1 SV=1
Length = 354
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/279 (35%), Positives = 141/279 (50%), Gaps = 65/279 (23%)
Query: 1 GCTVSSHNPVKPPEPERYVPDKQSVQEVIEVRAPEPKAMERPSKDTPMVELKPTISQNLL 60
GCT++ H+ VKPPEPE+ V D+ EVIEVRAP +A+ RP D+P+ ++PT++ L
Sbjct: 57 GCTLAKHSNVKPPEPEKPVKDESDKDEVIEVRAPIREALPRPPIDSPLTVIQPTVAPALK 116
Query: 61 EQVKNLKPLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLK 120
+ V +K + D +I +GT CKNN C S+ G S C +H GVP+FHEG+K
Sbjct: 117 DMVFAVKTPAAQKSSD---AIEVGTTCKNNGCTYSFTGNSSDFGECTYHPGVPIFHEGMK 173
Query: 121 FWSCCTKKTTEFSAFLEQEGCTHGQHVWFKKTIVNVDKSSVFMLGSKVEISLHKAEVGSW 180
FWSCC K+T++F S FM HK W
Sbjct: 174 FWSCCQKRTSDF---------------------------SQFMAQKGCTYGEHK-----W 201
Query: 181 SKLDIPSLTIANHGDEKDKEDTSTNEVQHALDTAEKGQVKCRLDWFQTGSTVVVSIFGKK 240
K + +K V+CR DW QT + VV++I+ KK
Sbjct: 202 VK-----------------------------ENDDKKVVQCRYDWHQTATNVVMAIYAKK 232
Query: 241 YDPLRSKVLLSPVRLKVDLYFPEED-GNYQQDIELRGML 278
YD +S + L+P+RL V+L FPE+D + D+ELRG++
Sbjct: 233 YDYSQSVIELNPIRLHVNLVFPEQDNARFDLDLELRGIV 271
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 89/136 (65%), Gaps = 3/136 (2%)
Query: 302 GCTVSSHNPVKPPEPERYVPDKQSVQEVIEVRAPEPKAMERPSKDTPMVELKPTISQNLL 361
GCT++ H+ VKPPEPE+ V D+ EVIEVRAP +A+ RP D+P+ ++PT++ L
Sbjct: 57 GCTLAKHSNVKPPEPEKPVKDESDKDEVIEVRAPIREALPRPPIDSPLTVIQPTVAPALK 116
Query: 362 EQVKNLKPLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLK 421
+ V +K + D +I +GT CKNN C S+ G S C +H GVP+FHEG+K
Sbjct: 117 DMVFAVKTPAAQKSSD---AIEVGTTCKNNGCTYSFTGNSSDFGECTYHPGVPIFHEGMK 173
Query: 422 FWSCCTKKTTEFSAFL 437
FWSCC K+T++FS F+
Sbjct: 174 FWSCCQKRTSDFSQFM 189
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 86 KCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQ 145
+C N C Q ++ + C HH G P FH+ K WSCC KK+ +F+ FL +GCT +
Sbjct: 3 QCYNRGCGQLFDPQTNNDESCRHHPGEPFFHDAYKGWSCCNKKSVDFTEFLNIKGCTLAK 62
Query: 146 H 146
H
Sbjct: 63 H 63
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 387 KCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLH 438
+C N C Q ++ + C HH G P FH+ K WSCC KK+ +F+ FL+
Sbjct: 3 QCYNRGCGQLFDPQTNNDESCRHHPGEPFFHDAYKGWSCCNKKSVDFTEFLN 54
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 151 KTIVNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIPSLTI----ANHGDEKDKEDTSTNE 206
+ IVNV +S M G+KVEI L K E GSWS L+ P+ + + +EK K++ S E
Sbjct: 268 RGIVNVSNASAHMYGTKVEIKLPKLEPGSWSNLNFPNKKLPVVKKSQVEEKKKQEESDEE 327
>sp|A9YUB1|CHRD1_PIG Cysteine and histidine-rich domain-containing protein 1 OS=Sus
scrofa GN=CHORDC1 PE=2 SV=1
Length = 332
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 151/306 (49%), Gaps = 77/306 (25%)
Query: 1 GCTVSSHNPVKPPEP---ERYVPDKQSVQEVIE------VRAPEP-KAMERPSKDTPMVE 50
GCT HN KPPEP E +K+ + E+ ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPEPVKPEVKTTEKKELSELKPRFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 51 LKPTISQNLLEQVKNLKPLSHLD---RGDLSSSIPLGTKCKNNACKQSYEGPESLSTICV 107
L+ IS +L + + LK S + + + S I +GT CKN C ++Y+GP+SL +CV
Sbjct: 118 LELKISASLKQALDKLKLSSGNEENKKEEDSDEIKVGTSCKNGGCSKTYQGPQSLEEVCV 177
Query: 108 HHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKKTIVNVDKSSVFMLGSK 167
+H+GVP+FHEG+K+WSCC +KT++F+ FL QEGCT G+H
Sbjct: 178 YHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKH--------------------- 216
Query: 168 VEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTSTNEVQHALDTAEKGQVKCRLDWFQ 227
+W+K D A K V CR DW Q
Sbjct: 217 -----------TWTKKD-----------------------------AGKKVVPCRHDWHQ 236
Query: 228 TGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILC 287
TG V +S++ K P S+V+ + L V + F E + + Q+++L G++ ++
Sbjct: 237 TGGEVTISVYAKNSLPELSQVVANSTLLNVHIVF-EGEKEFHQNVKLWGVI--DVKRSYV 293
Query: 288 SMMHTK 293
+M TK
Sbjct: 294 TMTATK 299
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 95/149 (63%), Gaps = 13/149 (8%)
Query: 302 GCTVSSHNPVKPPEP---ERYVPDKQSVQEVIE------VRAPEP-KAMERPSKDTPMVE 351
GCT HN KPPEP E +K+ + E+ ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPEPVKPEVKTTEKKELSELKPRFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 352 LKPTISQNLLEQVKNLKPLSHLD---RGDLSSSIPLGTKCKNNACKQSYEGPESLSTICV 408
L+ IS +L + + LK S + + + S I +GT CKN C ++Y+GP+SL +CV
Sbjct: 118 LELKISASLKQALDKLKLSSGNEENKKEEDSDEIKVGTSCKNGGCSKTYQGPQSLEEVCV 177
Query: 409 HHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
+H+GVP+FHEG+K+WSCC +KT++F+ FL
Sbjct: 178 YHSGVPIFHEGMKYWSCCRRKTSDFNTFL 206
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL GCT G+H
Sbjct: 5 CYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCTKGRH 64
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL
Sbjct: 5 CYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFL 54
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 153 IVNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTS 203
+++V +S V M +K+EI++ KAE W+ L++P A EK KEDT+
Sbjct: 285 VIDVKRSYVTMTATKIEITMRKAEPMQWASLELP----AAKNQEKQKEDTA 331
>sp|Q29RL2|CHRD1_BOVIN Cysteine and histidine-rich domain-containing protein 1 OS=Bos
taurus GN=CHORDC1 PE=2 SV=1
Length = 332
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 145/291 (49%), Gaps = 75/291 (25%)
Query: 1 GCTVSSHNPVKPPEP---ERYVPDKQSVQEVIE------VRAPEP-KAMERPSKDTPMVE 50
GCT HN KPPEP E +K+ + E+ ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 51 LKPTISQNLLEQVKNLKPLSHLD---RGDLSSSIPLGTKCKNNACKQSYEGPESLSTICV 107
L+ IS +L + + LK S + + + S I +GT CKN C ++Y+GP+SL +CV
Sbjct: 118 LELKISASLKQALDKLKLSSGNEENKKEEDSDEIKIGTSCKNGGCSKTYQGPQSLEEVCV 177
Query: 108 HHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKKTIVNVDKSSVFMLGSK 167
+H+GVP+FHEG+K+WSCC +KT++F+ FL QEGCT G+H+
Sbjct: 178 YHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTTGKHM-------------------- 217
Query: 168 VEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTSTNEVQHALDTAEKGQVKCRLDWFQ 227
W+K D A K V CR DW Q
Sbjct: 218 ------------WTKKD-----------------------------AGKKVVPCRHDWHQ 236
Query: 228 TGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGML 278
TG V +S++ K P S+V+ + L V + F E + + Q+++L G++
Sbjct: 237 TGGEVTISVYAKNSLPELSQVVANSTLLNVHIVF-EGEKEFHQNVKLWGVI 286
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 95/149 (63%), Gaps = 13/149 (8%)
Query: 302 GCTVSSHNPVKPPEP---ERYVPDKQSVQEVIE------VRAPEP-KAMERPSKDTPMVE 351
GCT HN KPPEP E +K+ + E+ ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 352 LKPTISQNLLEQVKNLKPLSHLD---RGDLSSSIPLGTKCKNNACKQSYEGPESLSTICV 408
L+ IS +L + + LK S + + + S I +GT CKN C ++Y+GP+SL +CV
Sbjct: 118 LELKISASLKQALDKLKLSSGNEENKKEEDSDEIKIGTSCKNGGCSKTYQGPQSLEEVCV 177
Query: 409 HHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
+H+GVP+FHEG+K+WSCC +KT++F+ FL
Sbjct: 178 YHSGVPIFHEGMKYWSCCRRKTSDFNTFL 206
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL GCT G+H
Sbjct: 5 CYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRH 64
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL
Sbjct: 5 CYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFL 54
Score = 35.4 bits (80), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 153 IVNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIPS 187
+++V +S V M +K+EI++ KAE W+ L++P+
Sbjct: 285 VIDVKRSYVTMTATKIEITMRKAEPMQWASLELPA 319
>sp|D4A4T9|CHRD1_RAT Cysteine and histidine-rich domain-containing protein 1 OS=Rattus
norvegicus GN=Chordc1 PE=3 SV=1
Length = 331
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 143/292 (48%), Gaps = 77/292 (26%)
Query: 1 GCTVSSHNPVKPPEP---ERYVPDKQSVQEVIE------VRAPEP-KAMERPSKDTPMVE 50
GCT HN KPPEP E +K+ + E+ ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 51 LKPTISQNLLEQVKNLKPLSHLDRGDL----SSSIPLGTKCKNNACKQSYEGPESLSTIC 106
L+ IS +L + + LK LS + D S I +GT CKN C ++Y+G +SL +C
Sbjct: 118 LELKISASLKQALDKLK-LSSGNEEDKKEEDSDEIKIGTSCKNGGCSKTYQGLQSLEEVC 176
Query: 107 VHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKKTIVNVDKSSVFMLGS 166
V+H+GVP+FHEG+K+WSCC +KT++F+ FL QEGCT G+HV
Sbjct: 177 VYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTRGKHV------------------- 217
Query: 167 KVEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTSTNEVQHALDTAEKGQVKCRLDWF 226
W+K D A K V CR DW
Sbjct: 218 -------------WTKKD-----------------------------AGKKVVPCRHDWH 235
Query: 227 QTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGML 278
QTG V +S++ K P S+V + L V + F E + + Q+++L G++
Sbjct: 236 QTGGEVTISVYAKNSLPELSQVEANSTLLNVHIVF-EGEKEFHQNVKLWGVI 286
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 94/150 (62%), Gaps = 15/150 (10%)
Query: 302 GCTVSSHNPVKPPEP---ERYVPDKQSVQEVIE------VRAPEP-KAMERPSKDTPMVE 351
GCT HN KPPEP E +K+ + E+ ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 352 LKPTISQNLLEQVKNLKPLSHLDRGDL----SSSIPLGTKCKNNACKQSYEGPESLSTIC 407
L+ IS +L + + LK LS + D S I +GT CKN C ++Y+G +SL +C
Sbjct: 118 LELKISASLKQALDKLK-LSSGNEEDKKEEDSDEIKIGTSCKNGGCSKTYQGLQSLEEVC 176
Query: 408 VHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
V+H+GVP+FHEG+K+WSCC +KT++F+ FL
Sbjct: 177 VYHSGVPIFHEGMKYWSCCRRKTSDFNTFL 206
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL GCT G+H
Sbjct: 5 CYNRGCGQRFDPEANADDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRH 64
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL
Sbjct: 5 CYNRGCGQRFDPEANADDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFL 54
Score = 35.4 bits (80), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 153 IVNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIPS 187
+++V +S V M +K+EI++ KAE W+ L++P+
Sbjct: 285 VIDVKRSYVTMTATKIEITMRKAEPMQWASLELPT 319
>sp|Q9D1P4|CHRD1_MOUSE Cysteine and histidine-rich domain-containing protein 1 OS=Mus
musculus GN=Chordc1 PE=1 SV=1
Length = 331
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 143/291 (49%), Gaps = 75/291 (25%)
Query: 1 GCTVSSHNPVKPPEP---ERYVPDKQSVQEVIE------VRAPEP-KAMERPSKDTPMVE 50
GCT HN KPPEP E +K+ + E+ ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 51 LKPTISQNLLEQVKNLKPLSHLD---RGDLSSSIPLGTKCKNNACKQSYEGPESLSTICV 107
L+ IS +L + + LK S + + + S I +GT CKN C ++Y+G +SL +CV
Sbjct: 118 LELKISASLKQALDKLKLSSGSEEDKKEEDSDEIKIGTSCKNGGCSKTYQGLQSLEEVCV 177
Query: 108 HHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKKTIVNVDKSSVFMLGSK 167
+H+GVP+FHEG+K+WSCC +KT++F+ FL QEGCT G+HV
Sbjct: 178 YHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTRGKHV-------------------- 217
Query: 168 VEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTSTNEVQHALDTAEKGQVKCRLDWFQ 227
W+K D A K V CR DW Q
Sbjct: 218 ------------WTKKD-----------------------------AGKKVVPCRHDWHQ 236
Query: 228 TGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGML 278
TG V +S++ K P S+V + L V + F E + + Q+++L G++
Sbjct: 237 TGGEVTISVYAKNSLPELSQVEANSTLLNVHIVF-EGEKEFHQNVKLWGVI 286
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 94/149 (63%), Gaps = 13/149 (8%)
Query: 302 GCTVSSHNPVKPPEP---ERYVPDKQSVQEVIE------VRAPEP-KAMERPSKDTPMVE 351
GCT HN KPPEP E +K+ + E+ ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 352 LKPTISQNLLEQVKNLKPLSHLD---RGDLSSSIPLGTKCKNNACKQSYEGPESLSTICV 408
L+ IS +L + + LK S + + + S I +GT CKN C ++Y+G +SL +CV
Sbjct: 118 LELKISASLKQALDKLKLSSGSEEDKKEEDSDEIKIGTSCKNGGCSKTYQGLQSLEEVCV 177
Query: 409 HHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
+H+GVP+FHEG+K+WSCC +KT++F+ FL
Sbjct: 178 YHSGVPIFHEGMKYWSCCRRKTSDFNTFL 206
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL GCT G+H
Sbjct: 5 CYNRGCGQRFDPEANSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRH 64
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL
Sbjct: 5 CYNRGCGQRFDPEANSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFL 54
Score = 35.4 bits (80), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 153 IVNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIPS 187
+++V +S V M +K+EI++ KAE W+ L++P+
Sbjct: 285 VIDVKRSYVTMTATKIEITMRKAEPMQWASLELPT 319
>sp|Q4R7U2|CHRD1_MACFA Cysteine and histidine-rich domain-containing protein 1 OS=Macaca
fascicularis GN=CHORDC1 PE=2 SV=1
Length = 332
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 148/307 (48%), Gaps = 79/307 (25%)
Query: 1 GCTVSSHNPVKPPEP---ERYVPDKQSVQEVIE------VRAPEP-KAMERPSKDTPMVE 50
GCT HN KPPEP E +K+ + E+ ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 51 LKPTISQNLLEQVKNLKPLSHLDRGDL----SSSIPLGTKCKNNACKQSYEGPESLSTIC 106
L+ IS +L + + LK LS + D + I +GT CKN C ++Y G ESL +C
Sbjct: 118 LELKISASLKQALDKLK-LSSGNEEDKKEEDNDEIKIGTSCKNGGCSKTYRGLESLEEVC 176
Query: 107 VHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKKTIVNVDKSSVFMLGS 166
V+H+GVP+FHEG+K+WSCC +KT++F+ FL QEGCT G+H+
Sbjct: 177 VYHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTKGRHM------------------- 217
Query: 167 KVEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTSTNEVQHALDTAEKGQVKCRLDWF 226
W+K D A K V CR DW
Sbjct: 218 -------------WTKKD-----------------------------AGKKVVPCRHDWH 235
Query: 227 QTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEIL 286
QTG V +S++ K P S+V + L V + F E + + Q+++L G++ ++
Sbjct: 236 QTGGEVTISVYAKNSLPELSRVEANSTLLNVHIVF-EGEKEFDQNVKLWGVI--DVKRSY 292
Query: 287 CSMMHTK 293
+M TK
Sbjct: 293 VTMTATK 299
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 15/150 (10%)
Query: 302 GCTVSSHNPVKPPEP---ERYVPDKQSVQEVIE------VRAPEP-KAMERPSKDTPMVE 351
GCT HN KPPEP E +K+ + E+ ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 352 LKPTISQNLLEQVKNLKPLSHLDRGDL----SSSIPLGTKCKNNACKQSYEGPESLSTIC 407
L+ IS +L + + LK LS + D + I +GT CKN C ++Y G ESL +C
Sbjct: 118 LELKISASLKQALDKLK-LSSGNEEDKKEEDNDEIKIGTSCKNGGCSKTYRGLESLEEVC 176
Query: 408 VHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
V+H+GVP+FHEG+K+WSCC +KT++F+ FL
Sbjct: 177 VYHSGVPIFHEGMKYWSCCRRKTSDFNTFL 206
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C N AC Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL GCT G+H
Sbjct: 5 CYNRACGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRH 64
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
C N AC Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL
Sbjct: 5 CYNRACGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFL 54
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 153 IVNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTS 203
+++V +S V M +K+EI++ KAE W+ L++P A EK K+DT+
Sbjct: 285 VIDVKRSYVTMTATKIEINMRKAEPMQWASLELP----AAKKQEKQKDDTT 331
>sp|Q9UHD1|CHRD1_HUMAN Cysteine and histidine-rich domain-containing protein 1 OS=Homo
sapiens GN=CHORDC1 PE=1 SV=2
Length = 332
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 141/291 (48%), Gaps = 75/291 (25%)
Query: 1 GCTVSSHNPVKPPEPERYVPDKQSVQEVIE---------VRAPEP-KAMERPSKDTPMVE 50
GCT HN KPPEP + +E+ E ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPEPVKPEVKTTEKKELCELKPKFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 51 LKPTISQNLLEQVKNLKPLSHLD---RGDLSSSIPLGTKCKNNACKQSYEGPESLSTICV 107
L+ IS +L + + LK S + + + + I +GT CKN C ++Y+G ESL +CV
Sbjct: 118 LELKISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCV 177
Query: 108 HHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKKTIVNVDKSSVFMLGSK 167
+H+GVP+FHEG+K+WSCC +KT++F+ FL QEGCT G+H+
Sbjct: 178 YHSGVPIFHEGMKYWSCCRRKTSDFNTFLAQEGCTKGKHM-------------------- 217
Query: 168 VEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTSTNEVQHALDTAEKGQVKCRLDWFQ 227
W+K D A K V CR DW Q
Sbjct: 218 ------------WTKKD-----------------------------AGKKVVPCRHDWHQ 236
Query: 228 TGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGML 278
TG V +S++ K P S+V + L V + F E + + Q+++L G++
Sbjct: 237 TGGEVTISVYAKNSLPELSRVEANSTLLNVHIVF-EGEKEFDQNVKLWGVI 286
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 92/149 (61%), Gaps = 13/149 (8%)
Query: 302 GCTVSSHNPVKPPEPERYVPDKQSVQEVIE---------VRAPEP-KAMERPSKDTPMVE 351
GCT HN KPPEP + +E+ E ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPEPVKPEVKTTEKKELCELKPKFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 352 LKPTISQNLLEQVKNLKPLSHLD---RGDLSSSIPLGTKCKNNACKQSYEGPESLSTICV 408
L+ IS +L + + LK S + + + + I +GT CKN C ++Y+G ESL +CV
Sbjct: 118 LELKISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCV 177
Query: 409 HHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
+H+GVP+FHEG+K+WSCC +KT++F+ FL
Sbjct: 178 YHSGVPIFHEGMKYWSCCRRKTSDFNTFL 206
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL GCT G+H
Sbjct: 5 CYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRH 64
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL
Sbjct: 5 CYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFL 54
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 153 IVNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTS 203
+++V +S V M +K+EI++ KAE W+ L++P A EK K+ T+
Sbjct: 285 VIDVKRSYVTMTATKIEITMRKAEPMQWASLELP----AAKKQEKQKDATT 331
>sp|Q5RD91|CHRD1_PONAB Cysteine and histidine-rich domain-containing protein 1 OS=Pongo
abelii GN=CHORDC1 PE=2 SV=1
Length = 332
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 142/291 (48%), Gaps = 75/291 (25%)
Query: 1 GCTVSSHNPVKPPE---PERYVPDKQSVQEVIE------VRAPEP-KAMERPSKDTPMVE 50
GCT HN KPPE PE +K+ + E+ ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPESVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 51 LKPTISQNLLEQVKNLKPLSHLD---RGDLSSSIPLGTKCKNNACKQSYEGPESLSTICV 107
L+ IS +L + + LK S + + + + I +GT CKN C ++Y G ESL +CV
Sbjct: 118 LELKISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYRGLESLEEVCV 177
Query: 108 HHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKKTIVNVDKSSVFMLGSK 167
+H+GVP+ HEG+K+WSCC +KT++F+ FL QEGCT G+H+
Sbjct: 178 YHSGVPISHEGMKYWSCCRRKTSDFNTFLAQEGCTKGKHM-------------------- 217
Query: 168 VEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTSTNEVQHALDTAEKGQVKCRLDWFQ 227
W+K D A K V CR DW Q
Sbjct: 218 ------------WTKKD-----------------------------AGKKVVPCRHDWHQ 236
Query: 228 TGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGML 278
TG V +S++ K P S+V + L V + F E + ++Q+++L G++
Sbjct: 237 TGGEVTISVYAKNSLPELSRVEANSTLLNVHIVF-EGEKEFEQNVKLWGVI 286
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 92/149 (61%), Gaps = 13/149 (8%)
Query: 302 GCTVSSHNPVKPPE---PERYVPDKQSVQEVIE------VRAPEP-KAMERPSKDTPMVE 351
GCT HN KPPE PE +K+ + E+ ++AP+P +A++RPS D PM
Sbjct: 58 GCTKGRHNSEKPPESVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTN 117
Query: 352 LKPTISQNLLEQVKNLKPLSHLD---RGDLSSSIPLGTKCKNNACKQSYEGPESLSTICV 408
L+ IS +L + + LK S + + + + I +GT CKN C ++Y G ESL +CV
Sbjct: 118 LELKISASLKQALDKLKLSSGNEENKKEEDNDEIKIGTSCKNGGCSKTYRGLESLEEVCV 177
Query: 409 HHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
+H+GVP+ HEG+K+WSCC +KT++F+ FL
Sbjct: 178 YHSGVPISHEGMKYWSCCRRKTSDFNTFL 206
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL GCT G+H
Sbjct: 5 CYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRH 64
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL
Sbjct: 5 CYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFL 54
Score = 38.9 bits (89), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 153 IVNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTS 203
+++V +S V M +K+EI++ KAE W+ L++P A EK K+DT+
Sbjct: 285 VIDVKRSYVTMTATKIEITMRKAEPMQWASLELP----AAKKQEKQKDDTT 331
>sp|Q5ZML4|CHRD1_CHICK Cysteine and histidine-rich domain-containing protein 1 OS=Gallus
gallus GN=CHORDC1 PE=2 SV=1
Length = 331
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 137/293 (46%), Gaps = 79/293 (26%)
Query: 1 GCTVSSHNPVKPPEPERYVPDKQSVQEVIE------------VRAPEP-KAMERPSKDTP 47
GCT HN KPPEP + PD +S E E ++AP+P + ++RPS D P
Sbjct: 58 GCTKGLHNSEKPPEPVK--PDVKSTTERKELAELKPKFQEHIIQAPKPLETIKRPSPDEP 115
Query: 48 MVELKPTISQNLLEQVKNLK--PLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTI 105
M L+ +S +L + + LK + + + S I +GT CKN C ++Y+GP S +
Sbjct: 116 MTNLQLKVSASLKQALDKLKLSSENEEKKEEDSDEIKIGTPCKNAGCSKTYQGPHSTEEV 175
Query: 106 CVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKKTIVNVDKSSVFMLG 165
C +H+GVP+FHEG+K+WSCC +KT++F+ FL QEGCT G HV
Sbjct: 176 CQYHSGVPIFHEGMKYWSCCKRKTSDFNTFLAQEGCTTGTHV------------------ 217
Query: 166 SKVEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTSTNEVQHALDTAEKGQVKCRLDW 225
W+K D A K V CR DW
Sbjct: 218 --------------WTKKD-----------------------------AGKKVVPCRHDW 234
Query: 226 FQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGML 278
QTG V VSI+ K P S V + L + + F E + + ++++L G++
Sbjct: 235 HQTGGEVTVSIYAKNSVPDLSYVEANSTMLNIHIVF-EGEKEFHRNVKLWGVI 286
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 17/151 (11%)
Query: 302 GCTVSSHNPVKPPEPERYVPDKQSVQEVIE------------VRAPEP-KAMERPSKDTP 348
GCT HN KPPEP + PD +S E E ++AP+P + ++RPS D P
Sbjct: 58 GCTKGLHNSEKPPEPVK--PDVKSTTERKELAELKPKFQEHIIQAPKPLETIKRPSPDEP 115
Query: 349 MVELKPTISQNLLEQVKNLK--PLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTI 406
M L+ +S +L + + LK + + + S I +GT CKN C ++Y+GP S +
Sbjct: 116 MTNLQLKVSASLKQALDKLKLSSENEEKKEEDSDEIKIGTPCKNAGCSKTYQGPHSTEEV 175
Query: 407 CVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
C +H+GVP+FHEG+K+WSCC +KT++F+ FL
Sbjct: 176 CQYHSGVPIFHEGMKYWSCCKRKTSDFNTFL 206
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL GCT G H
Sbjct: 5 CYNRGCGQRFDPETNTEDSCTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGLH 64
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL
Sbjct: 5 CYNRGCGQRFDPETNTEDSCTYHPGVPVFHDALKGWSCCKRRTTDFSDFL 54
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 153 IVNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIP 186
+++V +S V M +K+E+S+ KAE W+ L++P
Sbjct: 285 VIDVKRSYVNMTATKIEVSMRKAEPLLWASLELP 318
>sp|Q6NUA0|CHRD1_XENLA Cysteine and histidine-rich domain-containing protein 1 OS=Xenopus
laevis GN=chordc1 PE=2 SV=1
Length = 334
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 128/261 (49%), Gaps = 76/261 (29%)
Query: 1 GCTVSSHNPVKPPEPER----YVPDKQSVQEV------IEVRAPEP-KAMERPSKDTPMV 49
GCT HN KPPEP + DK+ + + + ++AP+P + + RPS D PM
Sbjct: 58 GCTKGQHNNEKPPEPVKPEVKITSDKKELADFKPKFNELIIQAPKPIECINRPSSDEPMA 117
Query: 50 ELKPTISQNLLEQVKNLKPLSHLDRG--DLSSSIPLGTKCKNNACKQSYEGPESLSTICV 107
+L+ IS +L + + LK LS D+ D S I +GT CKN C +++ GP+S +C
Sbjct: 118 KLQLKISASLKQALDKLK-LSENDKTVTDESGEIKIGTSCKNGGCLKTFAGPQSNEEVCH 176
Query: 108 HHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKK---------------- 151
+H+GVP+FHEG+K+WSCC +KT++F+ FL EGCT G H+W KK
Sbjct: 177 YHSGVPIFHEGMKYWSCCRRKTSDFNTFLSLEGCTKGTHLWTKKDDGKKVVPCRHDWHQT 236
Query: 152 ------------------------TIVNVD----------------------KSSVFMLG 165
T+VN+ KS V +
Sbjct: 237 GAGVTISIYAKNSMPELSYVEANSTVVNIQVVFEGEKTFQQNVQLWGVIDVAKSYVSLTA 296
Query: 166 SKVEISLHKAEVGSWSKLDIP 186
+KVE+ L KAE +W++L++P
Sbjct: 297 TKVEVFLKKAEFMTWARLELP 317
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 92/149 (61%), Gaps = 14/149 (9%)
Query: 302 GCTVSSHNPVKPPEPER----YVPDKQSVQEV------IEVRAPEP-KAMERPSKDTPMV 350
GCT HN KPPEP + DK+ + + + ++AP+P + + RPS D PM
Sbjct: 58 GCTKGQHNNEKPPEPVKPEVKITSDKKELADFKPKFNELIIQAPKPIECINRPSSDEPMA 117
Query: 351 ELKPTISQNLLEQVKNLKPLSHLDRG--DLSSSIPLGTKCKNNACKQSYEGPESLSTICV 408
+L+ IS +L + + LK LS D+ D S I +GT CKN C +++ GP+S +C
Sbjct: 118 KLQLKISASLKQALDKLK-LSENDKTVTDESGEIKIGTSCKNGGCLKTFAGPQSNEEVCH 176
Query: 409 HHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
+H+GVP+FHEG+K+WSCC +KT++F+ FL
Sbjct: 177 YHSGVPIFHEGMKYWSCCRRKTSDFNTFL 205
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C N C Q Y+ + C +H GVPVFH+ LK WSCC ++TT+FS FL GCT GQH
Sbjct: 5 CYNRGCGQRYDPEGNSDDSCTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGQH 64
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
C N C Q Y+ + C +H GVPVFH+ LK WSCC ++TT+FS FL
Sbjct: 5 CYNRGCGQRYDPEGNSDDSCTYHPGVPVFHDALKGWSCCKRRTTDFSDFL 54
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 219 VKCRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGML 278
V CR DW QTG+ V +SI+ K P S V + + + + F E + +QQ+++L G++
Sbjct: 227 VPCRHDWHQTGAGVTISIYAKNSMPELSYVEANSTVVNIQVVF-EGEKTFQQNVQLWGVI 285
>sp|Q7T3F7|CHRD1_DANRE Cysteine and histidine-rich domain-containing protein 1 OS=Danio
rerio GN=chordc1 PE=2 SV=1
Length = 341
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 100/162 (61%), Gaps = 11/162 (6%)
Query: 1 GCTVSSHNPVKPPEPER----YVPDKQSVQEVIE---VRAPEP-KAMERPSKDTPMVELK 52
GCT HN KP EP + DK V+ + ++AP+P ++++RPS D P L+
Sbjct: 58 GCTKGPHNQEKPAEPVKPEVKSSLDKNDVKPKYDEFIIQAPKPLESIQRPSPDEPFSILQ 117
Query: 53 PTISQNL---LEQVKNLKPLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTICVHH 109
IS +L LE++K + +H + + S I +GT CKN C +++ G S C++H
Sbjct: 118 SKISPSLKQALEKLKLTEENAHEIKEEDSDEIKIGTSCKNGGCCKTFAGQASDDETCLYH 177
Query: 110 AGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKK 151
AGVP+FHEG+K+WSCC +KT++F+ FL QEGCT G+H W KK
Sbjct: 178 AGVPIFHEGMKYWSCCKRKTSDFNTFLSQEGCTRGKHQWKKK 219
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 89/147 (60%), Gaps = 11/147 (7%)
Query: 302 GCTVSSHNPVKPPEPER----YVPDKQSVQEVIE---VRAPEP-KAMERPSKDTPMVELK 353
GCT HN KP EP + DK V+ + ++AP+P ++++RPS D P L+
Sbjct: 58 GCTKGPHNQEKPAEPVKPEVKSSLDKNDVKPKYDEFIIQAPKPLESIQRPSPDEPFSILQ 117
Query: 354 PTISQNL---LEQVKNLKPLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTICVHH 410
IS +L LE++K + +H + + S I +GT CKN C +++ G S C++H
Sbjct: 118 SKISPSLKQALEKLKLTEENAHEIKEEDSDEIKIGTSCKNGGCCKTFAGQASDDETCLYH 177
Query: 411 AGVPVFHEGLKFWSCCTKKTTEFSAFL 437
AGVP+FHEG+K+WSCC +KT++F+ FL
Sbjct: 178 AGVPIFHEGMKYWSCCKRKTSDFNTFL 204
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C N C Q ++ ++ C +H GVPVFH+ LK WSCC ++TT+FS FL GCT G H
Sbjct: 5 CYNKGCGQRFDLEKNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCTKGPH 64
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
C N C Q ++ ++ C +H GVPVFH+ LK WSCC ++TT+FS FL
Sbjct: 5 CYNKGCGQRFDLEKNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFL 54
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 214 AEKGQVKCRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIE 273
A K V CR DW QTGS V++SI+ K P S V + LK+ + F E + +++ I
Sbjct: 221 AGKKVVPCRFDWHQTGSQVIISIYAKNSVPELSLVEGNSTVLKIHIIF-EGEKEFEKQIS 279
Query: 274 LRGMLAHTIQEILCSMMHTK 293
L G++ + + L +MM TK
Sbjct: 280 LWGVIDPS--KSLVNMMATK 297
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 153 IVNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIP 186
+++ KS V M+ +K+EI L KAE SW++LD+P
Sbjct: 283 VIDPSKSLVNMMATKIEIVLKKAEPMSWARLDLP 316
>sp|Q9R000|ITBP2_MOUSE Integrin beta-1-binding protein 2 OS=Mus musculus GN=Itgb1bp2 PE=2
SV=1
Length = 350
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 116/256 (45%), Gaps = 76/256 (29%)
Query: 1 GCTVSSHN----PVKPPEPERYVPDKQSVQEVIEV----RAPEPKAMERPSKDTPMVELK 52
GCTV H P PP+PE P S+QE + ++ E ERP + P L
Sbjct: 58 GCTVGLHCAEKLPEVPPQPEG--PATSSLQEQKPLNTIPKSAETLFRERPKSEMPPKLLP 115
Query: 53 PTISQNL---LEQVK-NLKPLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTICVH 108
ISQ L LEQ + + +P + LD +S I G+ C+N C Y+GPES +T C +
Sbjct: 116 LLISQALGVALEQKELDQEPGAGLD----NSLIWTGSSCQNPGCDAVYQGPESDATPCTY 171
Query: 109 HAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEG---------------CTHGQHV------ 147
H G P FHEG+K WSCC +T +F AFL Q G C H H
Sbjct: 172 HPGAPRFHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRHDWAKQLPASCRHDWHQTDSVVV 231
Query: 148 -------------WFKKT------------------------IVNVDKSSVFMLGSKVEI 170
W K + ++NV++SSV ++ S+VEI
Sbjct: 232 LTVYGQIPLPAFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQSSVSLMPSRVEI 291
Query: 171 SLHKAEVGSWSKLDIP 186
SL KA+ GSW++L+ P
Sbjct: 292 SLVKADPGSWAQLEHP 307
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 79/148 (53%), Gaps = 18/148 (12%)
Query: 302 GCTVSSHN----PVKPPEPERYVPDKQSVQEVIEV----RAPEPKAMERPSKDTPMVELK 353
GCTV H P PP+PE P S+QE + ++ E ERP + P L
Sbjct: 58 GCTVGLHCAEKLPEVPPQPEG--PATSSLQEQKPLNTIPKSAETLFRERPKSEMPPKLLP 115
Query: 354 PTISQNL---LEQVK-NLKPLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTICVH 409
ISQ L LEQ + + +P + LD +S I G+ C+N C Y+GPES +T C +
Sbjct: 116 LLISQALGVALEQKELDQEPGAGLD----NSLIWTGSSCQNPGCDAVYQGPESDATPCTY 171
Query: 410 HAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
H G P FHEG+K WSCC +T +F AFL
Sbjct: 172 HPGAPRFHEGMKSWSCCGIQTLDFGAFL 199
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C N C Q ++ +L C +H GVP+FH+ LK WSCC K+T +FS FL +GCT G H
Sbjct: 5 CYNKGCGQHFDPNTNLPDSCRYHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCTVGLH 64
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLH 438
C N C Q ++ +L C +H GVP+FH+ LK WSCC K+T +FS FL+
Sbjct: 5 CYNKGCGQHFDPNTNLPDSCRYHPGVPIFHDALKGWSCCRKRTVDFSEFLN 55
Score = 40.4 bits (93), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 212 DTAEKGQVKCRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGN--YQ 269
D A++ CR DW QT S VV++++G+ P + V S L V + F DGN +Q
Sbjct: 210 DWAKQLPASCRHDWHQTDSVVVLTVYGQIPLPAFNWVKASQTELHVHIVF---DGNRVFQ 266
Query: 270 QDIELRGMLAHTIQEILCSMMHTKAGPAAIK 300
++L G++ +++ S+M ++ + +K
Sbjct: 267 AQMKLWGVI--NVEQSSVSLMPSRVEISLVK 295
>sp|Q9UKP3|ITBP2_HUMAN Integrin beta-1-binding protein 2 OS=Homo sapiens GN=ITGB1BP2 PE=2
SV=1
Length = 347
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 108/250 (43%), Gaps = 65/250 (26%)
Query: 1 GCTVSSHNPVKPPE-PERYVPDKQSV---QEVIEV--RAPEPKAMERPSKDTPMVELKPT 54
GCT+ H K PE P+ P S Q+ + V ++ E ERP + P+ L
Sbjct: 58 GCTMGPHCAEKLPEAPQPEGPATSSSLQEQKPLNVIPKSAETLRRERPKSELPLKLLPLN 117
Query: 55 ISQNLLEQVKNLKPLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTICVHHAGVPV 114
ISQ L E K L L S I G+ C+N C Y+GPES +T C +H G P
Sbjct: 118 ISQAL-EMALEQKELDQEPGAGLDSLIRTGSSCQNPGCDAVYQGPESDATPCTYHPGAPR 176
Query: 115 FHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKK---------------TIVNV--- 156
FHEG+K WSCC +T +F AFL Q GC G+H W K+ +V V
Sbjct: 177 FHEGMKSWSCCGIQTLDFGAFLAQPGCRVGRHDWGKQLPASCRHDWHQTDSLVVVTVYGQ 236
Query: 157 ----------------------DKSSVF------------------MLGSKVEISLHKAE 176
D + VF ++ S+VEISL KA+
Sbjct: 237 IPLPAFNWVKASQTELHVHIVFDGNRVFQAQMKLWGVINVEQSSVFLMPSRVEISLVKAD 296
Query: 177 VGSWSKLDIP 186
GSW++L+ P
Sbjct: 297 PGSWAQLEHP 306
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
Query: 302 GCTVSSHNPVKPPE-PERYVPDKQSV---QEVIEV--RAPEPKAMERPSKDTPMVELKPT 355
GCT+ H K PE P+ P S Q+ + V ++ E ERP + P+ L
Sbjct: 58 GCTMGPHCAEKLPEAPQPEGPATSSSLQEQKPLNVIPKSAETLRRERPKSELPLKLLPLN 117
Query: 356 ISQNLLEQVKNLKPLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTICVHHAGVPV 415
ISQ L E K L L S I G+ C+N C Y+GPES +T C +H G P
Sbjct: 118 ISQAL-EMALEQKELDQEPGAGLDSLIRTGSSCQNPGCDAVYQGPESDATPCTYHPGAPR 176
Query: 416 FHEGLKFWSCCTKKTTEFSAFL 437
FHEG+K WSCC +T +F AFL
Sbjct: 177 FHEGMKSWSCCGIQTLDFGAFL 198
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C+N C Q ++ +L C HH GVP+FH+ LK WSCC K+T +FS FL +GCT G H
Sbjct: 5 CRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCTMGPH 64
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLH 438
C+N C Q ++ +L C HH GVP+FH+ LK WSCC K+T +FS FL+
Sbjct: 5 CRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLN 55
Score = 39.3 bits (90), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 212 DTAEKGQVKCRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGN--YQ 269
D ++ CR DW QT S VVV+++G+ P + V S L V + F DGN +Q
Sbjct: 209 DWGKQLPASCRHDWHQTDSLVVVTVYGQIPLPAFNWVKASQTELHVHIVF---DGNRVFQ 265
Query: 270 QDIELRGML 278
++L G++
Sbjct: 266 AQMKLWGVI 274
>sp|Q462R2|ITBP2_PIG Integrin beta-1-binding protein 2 OS=Sus scrofa GN=ITGB1BP2 PE=2
SV=1
Length = 346
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 87/167 (52%), Gaps = 18/167 (10%)
Query: 1 GCTVSSHNPVKPPE-PERYVPDKQSVQEVIEVRAPE--PKAME-----RPSKDTPMVELK 52
GCTV H K PE P+ P S ++E + P PK+ E RP D P L
Sbjct: 58 GCTVGPHCAEKLPEAPQPEGPATSS--SLLEQKPPNTIPKSAETLRRERPKSDLPPKLLP 115
Query: 53 PTISQNL---LEQVK-NLKPLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTICVH 108
ISQ L LEQ + + +P + LD SS I G C+N C Y+G ES +T C +
Sbjct: 116 LNISQALEMALEQKELDQEPGAGLD----SSLIQTGASCQNPGCDAVYQGSESDATPCTY 171
Query: 109 HAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKKTIVN 155
H G P FHEG+K WSCC +T +F FL Q GC G+H W KK + +
Sbjct: 172 HPGAPRFHEGMKSWSCCGIQTLDFGVFLAQPGCRVGRHDWGKKLLAS 218
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 76/148 (51%), Gaps = 18/148 (12%)
Query: 302 GCTVSSHNPVKPPE-PERYVPDKQSVQEVIEVRAPE--PKAME-----RPSKDTPMVELK 353
GCTV H K PE P+ P S ++E + P PK+ E RP D P L
Sbjct: 58 GCTVGPHCAEKLPEAPQPEGPATSS--SLLEQKPPNTIPKSAETLRRERPKSDLPPKLLP 115
Query: 354 PTISQNL---LEQVK-NLKPLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTICVH 409
ISQ L LEQ + + +P + LD SS I G C+N C Y+G ES +T C +
Sbjct: 116 LNISQALEMALEQKELDQEPGAGLD----SSLIQTGASCQNPGCDAVYQGSESDATPCTY 171
Query: 410 HAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
H G P FHEG+K WSCC +T +F FL
Sbjct: 172 HPGAPRFHEGMKSWSCCGIQTLDFGVFL 199
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 38/60 (63%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
C N C Q ++ +L C HH GVPVFH+ LK WSCC K+T +FS FL +GCT G H
Sbjct: 5 CHNKGCGQHFDPQTNLPDSCCHHPGVPVFHDALKGWSCCRKRTVDFSEFLNIKGCTVGPH 64
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 33/51 (64%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLH 438
C N C Q ++ +L C HH GVPVFH+ LK WSCC K+T +FS FL+
Sbjct: 5 CHNKGCGQHFDPQTNLPDSCCHHPGVPVFHDALKGWSCCRKRTVDFSEFLN 55
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 212 DTAEKGQVKCRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGN--YQ 269
D +K CR DW QT S VVV+++G+ P + V S L + + F DGN +Q
Sbjct: 210 DWGKKLLASCRHDWHQTDSLVVVTVYGQIPLPAFNWVEASQTELHIHIVF---DGNRVFQ 266
Query: 270 QDIELRGMLAHTIQEILCSMMHTKAGPAAIK 300
++L G++ +++ S+M ++ + +K
Sbjct: 267 AQVKLWGVV--NVEQSSVSLMPSRVEISLVK 295
>sp|Q9SE33|RAR1_ARATH Cysteine and histidine-rich domain-containing protein RAR1
OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1
Length = 226
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
CKN C Q+++ ++ T C HH G VFH+ L+ W CC EF F+E CT G H
Sbjct: 159 CKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWH 218
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 86 KCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQ 145
+C+ C + ++ C HA P FH+G+K WSCC +++ +FS FLE GC G+
Sbjct: 11 QCQRIGCNAMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRSHDFSLFLEIPGCKTGK 70
Query: 146 HV 147
H
Sbjct: 71 HT 72
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
CKN C Q+++ ++ T C HH G VFH+ L+ W CC EF F+
Sbjct: 159 CKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFM 208
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 387 KCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
+C+ C + ++ C HA P FH+G+K WSCC +++ +FS FL
Sbjct: 11 QCQRIGCNAMFTDDDNPQGSCQFHASGPFFHDGMKEWSCCKQRSHDFSLFL 61
>sp|Q6EPW7|RAR1_ORYSJ Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza
sativa subsp. japonica GN=RAR1 PE=1 SV=2
Length = 233
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 86 KCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQ 145
+C+ C ++ + C +H P+FH+G+K WSCC +K+ +FS FL GC G+
Sbjct: 25 RCQRIGCDATFTDDNNPDGSCQYHPSGPMFHDGMKQWSCCKQKSHDFSLFLAIPGCKTGK 84
Query: 146 HV 147
H
Sbjct: 85 HT 86
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 87 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQH 146
CKN C ++Y+ ++ C +H G VF + ++ W CC EF F+E CT G H
Sbjct: 169 CKNKGCGKTYKEKDNHDEACDYHPGPAVFRDRIRGWKCCDIHVKEFDEFMEIPPCTKGWH 228
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 387 KCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
+C+ C ++ + C +H P+FH+G+K WSCC +K+ +FS FL
Sbjct: 25 RCQRIGCDATFTDDNNPDGSCQYHPSGPMFHDGMKQWSCCKQKSHDFSLFL 75
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 388 CKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
CKN C ++Y+ ++ C +H G VF + ++ W CC EF F+
Sbjct: 169 CKNKGCGKTYKEKDNHDEACDYHPGPAVFRDRIRGWKCCDIHVKEFDEFM 218
>sp|Q89Z26|MNME_BACTN tRNA modification GTPase MnmE OS=Bacteroides thetaiotaomicron
(strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 /
VPI-5482) GN=mnmE PE=3 SV=1
Length = 465
Score = 39.3 bits (90), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 237 FGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGP 296
F K+ LRSK+L ++++L F EED + LR LA I++++ ++H+
Sbjct: 156 FSKELTDLRSKLLNFTSMIELELDFSEEDVEFADRSALRK-LADEIEQVISRLVHSFNVG 214
Query: 297 AAIKNGCTVS 306
AIKNG V+
Sbjct: 215 NAIKNGVPVA 224
>sp|Q8CPG6|DPO3_STAES DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=polC PE=3 SV=1
Length = 1442
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 76 DLSSSIPLGTKCKNNACKQSYEGPESLST-----IC-VHHAGVPVFHEGLKFWSCCTKKT 129
DLS P + Q + GPESL +C GVP F G K
Sbjct: 1109 DLSGIDPKTIPVDDKETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKP 1168
Query: 130 TEFSAFLEQEGCTHGQHVWF 149
T FS ++ G +HG VW
Sbjct: 1169 TTFSELVQISGLSHGTDVWL 1188
>sp|Q5HPS7|DPO3_STAEQ DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=polC PE=3 SV=2
Length = 1438
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 76 DLSSSIPLGTKCKNNACKQSYEGPESLST-----IC-VHHAGVPVFHEGLKFWSCCTKKT 129
DLS P + Q + GPESL +C GVP F G K
Sbjct: 1105 DLSGIDPKTIPVDDKETMQIFSGPESLGVTEDEILCKTGTFGVPEFGTGFVRQMLEDTKP 1164
Query: 130 TEFSAFLEQEGCTHGQHVWF 149
T FS ++ G +HG VW
Sbjct: 1165 TTFSELVQISGLSHGTDVWL 1184
>sp|Q64X55|MNME_BACFR tRNA modification GTPase MnmE OS=Bacteroides fragilis (strain
YCH46) GN=mnmE PE=3 SV=1
Length = 465
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 237 FGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGP 296
F K+ LR K+L ++++L F EED + LR LA I+E++ + ++ +
Sbjct: 156 FSKELTTLREKLLNFTSMIELELDFSEEDVEFADRSALR-RLADEIEEVIARLANSFSVG 214
Query: 297 AAIKNGCTVS 306
IKNG V+
Sbjct: 215 NVIKNGVPVA 224
>sp|Q5LG80|MNME_BACFN tRNA modification GTPase MnmE OS=Bacteroides fragilis (strain ATCC
25285 / NCTC 9343) GN=mnmE PE=3 SV=1
Length = 465
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 237 FGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGP 296
F K+ LR K+L ++++L F EED + LR LA I+E++ + ++ +
Sbjct: 156 FSKELTTLREKLLNFTSMIELELDFSEEDVEFADRSALR-RLADEIEEVIARLANSFSVG 214
Query: 297 AAIKNGCTVS 306
IKNG V+
Sbjct: 215 NVIKNGVPVA 224
>sp|Q4VZL0|YCF1_CUCSA Putative membrane protein ycf1 OS=Cucumis sativus GN=ycf1-A PE=3
SV=2
Length = 1879
Score = 34.3 bits (77), Expect = 2.1, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 188 LTIANHGDEKDKEDTSTNEVQHALDTAEKGQVKCRLDW-------FQTGSTVVVSIFGKK 240
L I+N+G+EK +ED + Q +++ E+ ++ W GS ++ F +K
Sbjct: 778 LPISNNGEEKTREDLKNEKNQESINLKEEKHIQIAELWESIRFGQLVRGSLLITQAFLRK 837
Query: 241 YDPLRSKVL---LSPVRLKVDLYFPEEDGNYQQDIELR 275
Y L S ++ L+ + L +F E+ N++++I ++
Sbjct: 838 YIILPSVIIAANLTRILLLSPPHFFEDFKNWKKEIYVK 875
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,384,931
Number of Sequences: 539616
Number of extensions: 7821722
Number of successful extensions: 21522
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 21358
Number of HSP's gapped (non-prelim): 148
length of query: 459
length of database: 191,569,459
effective HSP length: 121
effective length of query: 338
effective length of database: 126,275,923
effective search space: 42681261974
effective search space used: 42681261974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)