Query psy6601
Match_columns 459
No_of_seqs 273 out of 406
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 22:18:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1667|consensus 100.0 5.3E-75 1.1E-79 561.1 16.9 237 1-311 57-303 (320)
2 KOG1667|consensus 100.0 3.6E-69 7.7E-74 520.7 10.0 191 85-443 2-200 (320)
3 PF04968 CHORD: CHORD ; Inter 100.0 4.2E-34 9.1E-39 227.3 2.4 64 84-147 1-64 (64)
4 PF04968 CHORD: CHORD ; Inter 100.0 2.1E-30 4.6E-35 206.2 2.0 59 385-443 1-59 (64)
5 cd06488 p23_melusin_like p23_l 99.8 8.5E-21 1.8E-25 154.5 9.7 85 221-308 1-85 (87)
6 cd06490 p23_NCB5OR p23_like do 99.7 6.5E-17 1.4E-21 132.7 9.4 82 223-309 1-86 (87)
7 PLN03088 SGT1, suppressor of 99.7 1.3E-16 2.9E-21 157.8 8.1 88 220-310 156-243 (356)
8 cd06489 p23_CS_hSgt1_like p23_ 99.6 6.6E-16 1.4E-20 123.7 8.8 82 224-308 1-82 (84)
9 KOG1309|consensus 99.5 8E-15 1.7E-19 137.6 6.0 86 220-308 3-88 (196)
10 cd06465 p23_hB-ind1_like p23_l 99.5 1.3E-13 2.9E-18 115.5 9.0 83 223-309 3-86 (108)
11 cd06468 p23_CacyBP p23_like do 99.5 1.9E-13 4.1E-18 110.5 9.1 83 222-307 3-89 (92)
12 cd06466 p23_CS_SGT1_like p23_l 99.4 3.6E-13 7.7E-18 106.1 8.6 82 224-308 1-82 (84)
13 PF04969 CS: CS domain; Inter 99.4 6.7E-13 1.5E-17 101.5 7.8 77 221-300 1-79 (79)
14 cd06469 p23_DYX1C1_like p23_li 99.2 6.2E-11 1.4E-15 92.6 8.3 76 225-308 1-76 (78)
15 cd06463 p23_like Proteins cont 99.2 2.1E-10 4.5E-15 88.0 8.9 80 225-307 1-81 (84)
16 cd00237 p23 p23 binds heat sho 99.1 7E-10 1.5E-14 95.2 9.5 82 222-308 3-85 (106)
17 cd06493 p23_NUDCD1_like p23_NU 98.9 3.2E-09 6.8E-14 86.1 7.9 80 223-308 1-83 (85)
18 cd06467 p23_NUDC_like p23_like 98.8 1.3E-08 2.8E-13 80.8 7.0 80 223-308 1-83 (85)
19 cd00298 ACD_sHsps_p23-like Thi 98.5 2E-07 4.4E-12 69.0 6.4 74 225-300 1-80 (80)
20 cd06494 p23_NUDCD2_like p23-li 98.3 1.8E-06 4E-11 72.8 6.9 76 222-304 7-84 (93)
21 COG5091 SGT1 Suppressor of G2 97.1 0.00031 6.8E-09 71.2 2.6 95 218-314 174-268 (368)
22 cd06492 p23_mNUDC_like p23-lik 96.7 0.0089 1.9E-07 49.7 7.7 78 224-307 2-83 (87)
23 KOG3158|consensus 95.6 0.033 7.1E-07 53.2 6.8 81 224-308 11-92 (180)
24 cd06495 p23_NUDCD3_like p23-li 94.9 0.13 2.9E-06 44.5 7.7 87 222-312 6-95 (102)
25 cd06472 ACD_ScHsp26_like Alpha 94.7 0.13 2.9E-06 42.2 6.9 77 222-300 1-92 (92)
26 smart00107 BTK Bruton's tyrosi 93.0 0.063 1.4E-06 39.3 1.8 27 107-143 7-33 (36)
27 cd06471 ACD_LpsHSP_like Group 92.3 0.45 9.7E-06 38.9 6.2 76 222-300 2-93 (93)
28 cd06464 ACD_sHsps-like Alpha-c 92.1 0.59 1.3E-05 36.4 6.4 75 224-300 1-88 (88)
29 COG0071 IbpA Molecular chapero 91.8 0.72 1.6E-05 41.2 7.3 81 221-303 41-135 (146)
30 KOG3260|consensus 90.7 0.58 1.3E-05 45.7 6.0 81 223-306 77-158 (224)
31 PF00779 BTK: BTK motif; Inte 89.8 0.2 4.3E-06 35.9 1.6 27 107-143 2-28 (32)
32 PF00011 HSP20: Hsp20/alpha cr 89.8 2.2 4.9E-05 34.9 8.0 79 224-304 1-91 (102)
33 PF11822 DUF3342: Domain of un 71.7 2.5 5.3E-05 43.8 2.0 46 86-133 263-317 (317)
34 cd06479 ACD_HspB7_like Alpha c 71.1 17 0.00038 30.2 6.6 74 224-299 2-80 (81)
35 cd06475 ACD_HspB1_like Alpha c 70.7 16 0.00034 30.4 6.3 73 223-297 3-83 (86)
36 PF11822 DUF3342: Domain of un 61.7 4.2 9.1E-05 42.1 1.5 44 391-434 265-317 (317)
37 PHA03358 Alkaline exonuclease; 56.6 5.2 0.00011 33.8 0.9 26 422-447 4-43 (75)
38 cd06526 metazoan_ACD Alpha-cry 56.5 41 0.00089 27.2 6.1 68 230-299 7-82 (83)
39 KOG4379|consensus 54.9 28 0.0006 38.5 6.1 81 221-308 290-373 (596)
40 cd06470 ACD_IbpA-B_like Alpha- 51.8 71 0.0015 26.4 6.9 72 223-298 3-88 (90)
41 PHA03149 hypothetical protein; 49.7 9.2 0.0002 31.7 1.3 23 422-445 4-39 (66)
42 cd06497 ACD_alphaA-crystallin_ 46.5 77 0.0017 26.4 6.3 74 225-300 5-86 (86)
43 cd06478 ACD_HspB4-5-6 Alpha-cr 32.7 1.9E+02 0.0041 23.8 6.5 70 227-298 4-81 (83)
44 cd06498 ACD_alphaB-crystallin_ 32.0 1.8E+02 0.0039 24.1 6.3 71 228-300 5-83 (84)
45 PF10813 DUF2733: Protein of u 31.2 18 0.00039 26.4 0.3 9 422-430 4-12 (32)
46 PRK10743 heat shock protein Ib 29.9 2E+02 0.0044 26.2 6.8 76 222-301 36-124 (137)
47 KOG2265|consensus 22.9 1.7E+02 0.0037 28.6 5.2 86 222-313 20-108 (179)
48 PF01835 A2M_N: MG2 domain; I 22.2 1.8E+02 0.0038 23.7 4.6 54 224-279 9-65 (99)
49 PF08391 Ly49: Ly49-like prote 21.8 23 0.0005 32.2 -0.7 23 106-132 97-119 (119)
No 1
>KOG1667|consensus
Probab=100.00 E-value=5.3e-75 Score=561.11 Aligned_cols=237 Identities=37% Similarity=0.659 Sum_probs=216.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCc----CccceeecCCCCccccCCCCCCC-Ccc-----ccCcccChhHHHHHHhcCCCC
Q psy6601 1 GCTVSSHNPVKPPEPERYVPDKQ----SVQEVIEVRAPEPKAMERPSKDT-PMV-----ELKPTISQNLLEQVKNLKPLS 70 (459)
Q Consensus 1 GCT~~~H~~~KP~ep~k~~p~~~----~~~e~i~~~~~~~~~~~rPs~d~-p~~-----~l~~~vs~~l~~~~~~l~ls~ 70 (459)
|||+|+|||||||||++ |+++ +.+|+++++++..++..|+++|. |+. .+.|+||++|+++|++.+.
T Consensus 57 GCT~gkHsneKppe~~k--p~~~et~~ekkel~~v~~~~~e~~~~~pkd~~~ik~~~~~~~tp~isaale~~l~~kke-- 132 (320)
T KOG1667|consen 57 GCTRGKHSNEKPPEPKK--PEVKETRPEKKELVEVWKGLNESGKLDPKDATPIKQNLNVEVTPGISAALEKALKEKKE-- 132 (320)
T ss_pred cccccccccCCCCCCCC--CcccccccccccceeechhhHhhCcCCCCcccccccccCcccCcchhHHHHHHHHhcch--
Confidence 89999999999999987 7776 44678888888777776666664 776 6889999999999985321
Q ss_pred CCCCCCCCCCCCCCCcccccCcCceeeCCCCccccceecCCCcccccCCcccccCCCcccchhhhccCCCCcccccCCcc
Q psy6601 71 HLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFK 150 (459)
Q Consensus 71 ~~~~~~~s~~I~~gt~CkN~GCgq~F~~~eN~~~~C~yHPG~PvFHDg~K~WSCCkkkttDF~eFL~i~GCt~GkH~~~k 150 (459)
.+.++.|++|++|+|+||...|+|.+|..+.|+||||+|||||||||||||++||+||++||+|+|||.|.|.|++
T Consensus 133 ----a~q~~~I~iGtsCkN~GCs~~fqG~esd~~~CtyHpGapiFHEGMKyWSCC~kkTsdF~aFlaQ~GCt~GeH~w~k 208 (320)
T KOG1667|consen 133 ----AAQSADIQIGTSCKNNGCSTEFQGSESDKENCTYHPGAPIFHEGMKYWSCCNKKTSDFGAFLAQVGCTSGEHKWRK 208 (320)
T ss_pred ----hhcCcCceeCCcccCCCcceeeeccccccccceeCCCChhhhccchhhhhcccccccHHHHhhhcCccccchhhhc
Confidence 2344559999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccCccchhcccchhhhhccccccCCCcccCCCccccccCCCCCcccCCcchhhhhccccccccceeecccccccCc
Q psy6601 151 KTIVNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTSTNEVQHALDTAEKGQVKCRLDWFQTGS 230 (459)
Q Consensus 151 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ld~P~~t~~~~~~e~~ke~~~t~e~~h~l~~~~~~~v~CR~DwyQT~~ 230 (459)
... +++||+|||||++
T Consensus 209 ~~~----------------------------------------------------------------V~~cR~Dwhqt~~ 224 (320)
T KOG1667|consen 209 NEI----------------------------------------------------------------VVKCRHDWHQTNG 224 (320)
T ss_pred cCc----------------------------------------------------------------cccchhhhhhcCC
Confidence 862 5899999999999
Q ss_pred eEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEeecCCccCCCCC
Q psy6601 231 TVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAIKNGCTVSSHNP 310 (459)
Q Consensus 231 ~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~Ka~~~~~~h~~ 310 (459)
.|+|+||||+++|+.|.|++|+++|+|+|+||++|++|+++++|||+|+ |++|+|.||+|||||+|+|+++++|+.-+
T Consensus 225 ~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvn--ve~s~v~m~~tkVEIsl~k~ep~sWa~Le 302 (320)
T KOG1667|consen 225 FVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVN--VEESSVVMGETKVEISLKKAEPGSWARLE 302 (320)
T ss_pred eEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeec--hhhceEEeecceEEEEEeccCCCCccccc
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999999999998654
Q ss_pred C
Q psy6601 311 V 311 (459)
Q Consensus 311 ~ 311 (459)
-
T Consensus 303 ~ 303 (320)
T KOG1667|consen 303 F 303 (320)
T ss_pred C
Confidence 3
No 2
>KOG1667|consensus
Probab=100.00 E-value=3.6e-69 Score=520.67 Aligned_cols=191 Identities=40% Similarity=0.760 Sum_probs=155.3
Q ss_pred CcccccCcCceeeCCCCccccceecCCCcccccCCcccccCCCcccchhhhccCCCCcccccCCccccccccCccchhcc
Q psy6601 85 TKCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHVWFKKTIVNVDKSSVFML 164 (459)
Q Consensus 85 t~CkN~GCgq~F~~~eN~~~~C~yHPG~PvFHDg~K~WSCCkkkttDF~eFL~i~GCt~GkH~~~k~~~~~~~~~~~~~~ 164 (459)
..|||+||||.|||..|++++|+||||+|+|||++|+||||+||++||++||+|+|||.|+|+.+|++
T Consensus 2 l~CynkGCGq~FDP~tN~deaC~~HPG~P~FHDA~KgWsCC~kkstDFseflnikGCT~gkHsneKpp------------ 69 (320)
T KOG1667|consen 2 LQCYNKGCGQLFDPKTNDDEACTYHPGVPYFHDAYKGWSCCDKKSTDFSEFLNIKGCTRGKHSNEKPP------------ 69 (320)
T ss_pred ceeeccCcccccCCCCCCccccccCCCCcchhhhhccccccccccccHHHhhccccccccccccCCCC------------
Confidence 36999999999999999999999999999999999999999999999999999999999999877775
Q ss_pred cchhhhhccccccCCCcccCCCccccccCCCCCcccCCcchhhhhccccccccceeecccccccCceEEEEEEeeecCCC
Q psy6601 165 GSKVEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTSTNEVQHALDTAEKGQVKCRLDWFQTGSTVVVSIFGKKYDPL 244 (459)
Q Consensus 165 ~s~~~~~~~~~~~~~~~~ld~P~~t~~~~~~e~~ke~~~t~e~~h~l~~~~~~~v~CR~DwyQT~~~V~VSVyaKk~dp~ 244 (459)
T Consensus 70 -------------------------------------------------------------------------------- 69 (320)
T KOG1667|consen 70 -------------------------------------------------------------------------------- 69 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEeecCCccCCCCCCCCCCCCCCCC--C
Q psy6601 245 RSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAIKNGCTVSSHNPVKPPEPERYVP--D 322 (459)
Q Consensus 245 ~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~Ka~~~~~~h~~~Kp~~~~~~~~--~ 322 (459)
||+++.- .
T Consensus 70 ----------------------------------------------------------------------e~~kp~~~et 79 (320)
T KOG1667|consen 70 ----------------------------------------------------------------------EPKKPEVKET 79 (320)
T ss_pred ----------------------------------------------------------------------CCCCCccccc
Confidence 2211100 0
Q ss_pred cccccccccccCCCCccCCCCCCCC-Ccc-----ccCcccChhHHHHHHhcCCCCccCCCCCCCCCCCCCcccccCccce
Q psy6601 323 KQSVQEVIEVRAPEPKAMERPSKDT-PMV-----ELKPTISQNLLEQVKNLKPLSHLDRGDLSSSIPLGTKCKNNACKQS 396 (459)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~rp~~~~-~~~-----~l~~~i~~~~~~~~~~~k~~~~~~~~~~s~~I~iGt~Ckn~GC~~~ 396 (459)
.+...|+++++++..++..|++++. |+. .+.|+||++|.++|++.+.+ +.+..|+|||+|||+||.++
T Consensus 80 ~~ekkel~~v~~~~~e~~~~~pkd~~~ik~~~~~~~tp~isaale~~l~~kkea------~q~~~I~iGtsCkN~GCs~~ 153 (320)
T KOG1667|consen 80 RPEKKELVEVWKGLNESGKLDPKDATPIKQNLNVEVTPGISAALEKALKEKKEA------AQSADIQIGTSCKNNGCSTE 153 (320)
T ss_pred ccccccceeechhhHhhCcCCCCcccccccccCcccCcchhHHHHHHHHhcchh------hcCcCceeCCcccCCCccee
Confidence 1122344445444433333333332 443 57789999999999864421 22334999999999999999
Q ss_pred eeCCCCCccceEeeCCCCccccCCcccccccccccchHhhhccccee
Q psy6601 397 YEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLHYTHYL 443 (459)
Q Consensus 397 y~g~~s~~~~C~yHpG~PIFHEGmK~WSCCkrktsDF~~FL~i~~~~ 443 (459)
|+|.+|+.+.|+||||+|||||||||||||++|||||++||..+||-
T Consensus 154 fqG~esd~~~CtyHpGapiFHEGMKyWSCC~kkTsdF~aFlaQ~GCt 200 (320)
T KOG1667|consen 154 FQGSESDKENCTYHPGAPIFHEGMKYWSCCNKKTSDFGAFLAQVGCT 200 (320)
T ss_pred eeccccccccceeCCCChhhhccchhhhhcccccccHHHHhhhcCcc
Confidence 99999999999999999999999999999999999999999999995
No 3
>PF04968 CHORD: CHORD ; InterPro: IPR007051 Cysteine- and histidine-rich domains (CHORDs) are 60-amino acid modules that bind two zinc ions. They are usually arranged in tandem and are found in all tested eukaryotes, with the exception of yeast, where they are involved in processes ranging from pressure sensing in the heart to maintenance of diploidy in fungi, and exhibit distinct protein-protein interaction specificity. Six cysteine and two histidine residues are invariant within the CHORD domain. Three other residues are also invariant and some positions are confined to positive, negative, or aromatic amino acids [, ]. Silencing of the Caenorhabditis elegansCHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development. The CHORD domain is sometimes found N-terminal to the CS domain, IPR007052 from INTERPRO, in metazoan proteins, but occurs separately from the CS domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains []. ; PDB: 2XCM_E 2YRT_A.
Probab=99.98 E-value=4.2e-34 Score=227.34 Aligned_cols=64 Identities=52% Similarity=1.075 Sum_probs=48.6
Q ss_pred CCcccccCcCceeeCCCCccccceecCCCcccccCCcccccCCCcccchhhhccCCCCcccccC
Q psy6601 84 GTKCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTHGQHV 147 (459)
Q Consensus 84 gt~CkN~GCgq~F~~~eN~~~~C~yHPG~PvFHDg~K~WSCCkkkttDF~eFL~i~GCt~GkH~ 147 (459)
|++|+|.||++.|++++|.+++|+||||.||||||||+||||++|++||++||+|+||++|+|+
T Consensus 1 ~~~C~n~GC~~~y~~~~n~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dF~~Fl~i~GC~~G~H~ 64 (64)
T PF04968_consen 1 GTKCKNKGCGKEYDEEENDDGACHYHPGPPVFHEGMKGWSCCKKKVSDFDEFLKIPGCTTGKHS 64 (64)
T ss_dssp -EE--SCTT--EE-TTT--TTTEEEBSS-EEEETTEEEETTTTEEESSHHHHTT---SCEE---
T ss_pred CCceECCCCCCEECCCCCCCCceEecCCCceecCCceEEecCCCEeeCHHHHhcCCCCcccCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999995
No 4
>PF04968 CHORD: CHORD ; InterPro: IPR007051 Cysteine- and histidine-rich domains (CHORDs) are 60-amino acid modules that bind two zinc ions. They are usually arranged in tandem and are found in all tested eukaryotes, with the exception of yeast, where they are involved in processes ranging from pressure sensing in the heart to maintenance of diploidy in fungi, and exhibit distinct protein-protein interaction specificity. Six cysteine and two histidine residues are invariant within the CHORD domain. Three other residues are also invariant and some positions are confined to positive, negative, or aromatic amino acids [, ]. Silencing of the Caenorhabditis elegansCHORD-containing gene results in semisterility and embryo lethality, suggesting an essential function of the wild-type gene in nematode development. The CHORD domain is sometimes found N-terminal to the CS domain, IPR007052 from INTERPRO, in metazoan proteins, but occurs separately from the CS domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains []. ; PDB: 2XCM_E 2YRT_A.
Probab=99.96 E-value=2.1e-30 Score=206.19 Aligned_cols=59 Identities=47% Similarity=0.967 Sum_probs=46.0
Q ss_pred CCcccccCccceeeCCCCCccceEeeCCCCccccCCcccccccccccchHhhhccccee
Q psy6601 385 GTKCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLHYTHYL 443 (459)
Q Consensus 385 Gt~Ckn~GC~~~y~g~~s~~~~C~yHpG~PIFHEGmK~WSCCkrktsDF~~FL~i~~~~ 443 (459)
|++|+|.||+++|.+++|.++.|+||||+|||||||||||||++||+||++||+|+||-
T Consensus 1 ~~~C~n~GC~~~y~~~~n~~~~C~yHpG~PvFHeg~K~WsCC~~k~~dF~~Fl~i~GC~ 59 (64)
T PF04968_consen 1 GTKCKNKGCGKEYDEEENDDGACHYHPGPPVFHEGMKGWSCCKKKVSDFDEFLKIPGCT 59 (64)
T ss_dssp -EE--SCTT--EE-TTT--TTTEEEBSS-EEEETTEEEETTTTEEESSHHHHTT---SC
T ss_pred CCceECCCCCCEECCCCCCCCceEecCCCceecCCceEEecCCCEeeCHHHHhcCCCCc
Confidence 68999999999999999999999999999999999999999999999999999999985
No 5
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.84 E-value=8.5e-21 Score=154.52 Aligned_cols=85 Identities=33% Similarity=0.492 Sum_probs=80.8
Q ss_pred ecccccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEee
Q psy6601 221 CRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAIK 300 (459)
Q Consensus 221 CR~DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~K 300 (459)
||+|||||++.|+|+||+|.++++...|++++..|.+++.++ +++.|+.+++|||.|| |++|+++++++||||.|+|
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~-~~~~y~~~l~L~~~I~--~~~s~~~v~~~kvei~L~K 77 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFE-GNKEFQLDIELWGVID--VEKSSVNMLPTKVEIKLRK 77 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECC-CCceEEEEeeccceEC--hhHcEEEecCcEEEEEEEe
Confidence 999999999999999999999999999999999999999996 4677999999999999 9999999999999999999
Q ss_pred cCCccCCC
Q psy6601 301 NGCTVSSH 308 (459)
Q Consensus 301 a~~~~~~h 308 (459)
+++..|++
T Consensus 78 ~~~~~W~~ 85 (87)
T cd06488 78 AEPGSWAK 85 (87)
T ss_pred CCCCcCcc
Confidence 99887764
No 6
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.70 E-value=6.5e-17 Score=132.67 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=67.8
Q ss_pred ccccccCceEEEEEEeeec-CCCC-cEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEec--ceeeeeEE
Q psy6601 223 LDWFQTGSTVVVSIFGKKY-DPLR-SKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMM--HTKAGPAA 298 (459)
Q Consensus 223 ~DwyQT~~~V~VSVyaKk~-dp~~-S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~--~TK~Ei~l 298 (459)
+|||||+++|+|+||+|.. .++. ..|.+....|.|.+.+| +..|+.+++|||.|| ++. .++++ +|||||+|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~--~~~~~~~~~L~~~I~--~~~-~~~~~~~~~KVEI~L 75 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG--DKSYLLHLDLSNEVQ--WPC-EVRISTETGKIELVL 75 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC--CceEEEeeeccccCC--CCc-EEEEcccCceEEEEE
Confidence 6999999999999999963 3333 33555666899999996 667999999999999 776 77777 66999999
Q ss_pred eecCCccCCCC
Q psy6601 299 IKNGCTVSSHN 309 (459)
Q Consensus 299 ~Ka~~~~~~h~ 309 (459)
+|+++..|++-
T Consensus 76 ~K~e~~~W~~L 86 (87)
T cd06490 76 KKKEPEKWTSL 86 (87)
T ss_pred EcCCCCccccC
Confidence 99999998764
No 7
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.66 E-value=1.3e-16 Score=157.79 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=82.1
Q ss_pred eecccccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEe
Q psy6601 220 KCRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAI 299 (459)
Q Consensus 220 ~CR~DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~ 299 (459)
.||+|||||.++|+|+||+|+++++...|+|++..|.|.|.++ ++..|..++.|||.|+ |++|++++++|||||+|+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~-~~~~y~~~~~L~~~I~--p~~s~~~v~~~Kiei~l~ 232 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVP-GEDAYHLQPRLFGKII--PDKCKYEVLSTKIEIRLA 232 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecC-CCcceeeccccccccc--ccccEEEEecceEEEEEe
Confidence 5999999999999999999999999999999999999999885 5578999999999999 999999999999999999
Q ss_pred ecCCccCCCCC
Q psy6601 300 KNGCTVSSHNP 310 (459)
Q Consensus 300 Ka~~~~~~h~~ 310 (459)
|+++..|++--
T Consensus 233 K~~~~~W~~L~ 243 (356)
T PLN03088 233 KAEPITWASLE 243 (356)
T ss_pred cCCCCCccccc
Confidence 99997777553
No 8
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.64 E-value=6.6e-16 Score=123.74 Aligned_cols=82 Identities=23% Similarity=0.319 Sum_probs=76.9
Q ss_pred cccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEeecCC
Q psy6601 224 DWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAIKNGC 303 (459)
Q Consensus 224 DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~Ka~~ 303 (459)
|||||.+.|.|+||+|.+.++...|++++..|.+.+..+ +++.|..+++|||.|+ |++|+++++++||||.|.|+++
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~-~~~~y~~~~~L~~~I~--p~~s~~~v~~~kiei~L~K~~~ 77 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLP-SGNDYSLKLHLLHPIV--PEQSSYKILSTKIEIKLKKTEA 77 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECC-CCCcEEEeeecCceec--chhcEEEEeCcEEEEEEEcCCC
Confidence 899999999999999999999999999999999998884 5567999999999999 9999999999999999999998
Q ss_pred ccCCC
Q psy6601 304 TVSSH 308 (459)
Q Consensus 304 ~~~~h 308 (459)
..|++
T Consensus 78 ~~W~~ 82 (84)
T cd06489 78 IRWSK 82 (84)
T ss_pred CCCcc
Confidence 87764
No 9
>KOG1309|consensus
Probab=99.53 E-value=8e-15 Score=137.61 Aligned_cols=86 Identities=23% Similarity=0.328 Sum_probs=80.9
Q ss_pred eecccccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEe
Q psy6601 220 KCRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAI 299 (459)
Q Consensus 220 ~CR~DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~ 299 (459)
.-|||||||.++|+|+||+|++-++...|+|....|.+-+..| +...|+....|+|.|. |++++|+++.|||||+|.
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~-~g~~~~l~~~L~~~I~--pe~~s~k~~stKVEI~L~ 79 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLP-SGSEYNLQLKLYHEII--PEKSSFKVFSTKVEITLA 79 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecC-CchhhhhhHHhccccc--ccceeeEeeeeeEEEEec
Confidence 4699999999999999999999999999999999999999997 7778999999999999 999999999999999999
Q ss_pred ecCCccCCC
Q psy6601 300 KNGCTVSSH 308 (459)
Q Consensus 300 Ka~~~~~~h 308 (459)
|++..+|--
T Consensus 80 K~~~irW~~ 88 (196)
T KOG1309|consen 80 KAEIIRWES 88 (196)
T ss_pred cccchhhhh
Confidence 999988853
No 10
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.48 E-value=1.3e-13 Score=115.51 Aligned_cols=83 Identities=16% Similarity=0.088 Sum_probs=75.5
Q ss_pred ccccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEeecC
Q psy6601 223 LDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAIKNG 302 (459)
Q Consensus 223 ~DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~Ka~ 302 (459)
++||||.+.|.|+||++.+ +...|.|++..|.|.+....+++.|..+++||+.|+ |++|+++++++||+|+|.|++
T Consensus 3 ~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~--pe~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 3 VLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEID--PEESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred eeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhcc--ccccEEEecCCeEEEEEEECC
Confidence 6899999999999999998 677999999999999976457888999999999999 999999999999999999999
Q ss_pred -CccCCCC
Q psy6601 303 -CTVSSHN 309 (459)
Q Consensus 303 -~~~~~h~ 309 (459)
+..|++=
T Consensus 79 ~~~~W~~L 86 (108)
T cd06465 79 AGEYWPRL 86 (108)
T ss_pred CCCCCccc
Confidence 6666554
No 11
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.47 E-value=1.9e-13 Score=110.52 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=75.6
Q ss_pred cccccccCceEEEEEEeeecCC---CCcEEEecCeEEEEEEecCCCCceeeeeee-eeeeeccccceeEEEecceeeeeE
Q psy6601 222 RLDWFQTGSTVVVSIFGKKYDP---LRSKVLLSPVRLKVDLYFPEEDGNYQQDIE-LRGMLAHTIQEILCSMMHTKAGPA 297 (459)
Q Consensus 222 R~DwyQT~~~V~VSVyaKk~dp---~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~-L~G~ID~~~~kS~~~~~~TK~Ei~ 297 (459)
|+|||||++.|.|+||.+.+.+ +...|+|++..|.|.+.. .++.+|...+. ||+.|+ +++|++++.++||+|+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~-~~~~~~~~~~~~L~~~I~--~e~s~~~~~~~ki~i~ 79 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHD-LNGKNYRFTINRLLKKID--PEKSSFKVKTDRIVIT 79 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEEC-CCCcEEEEEehHhhCccC--ccccEEEEeCCEEEEE
Confidence 7999999999999999999987 888999999999999865 46678999997 999999 9999999999999999
Q ss_pred EeecCCccCC
Q psy6601 298 AIKNGCTVSS 307 (459)
Q Consensus 298 l~Ka~~~~~~ 307 (459)
|.|++...|+
T Consensus 80 L~K~~~~~W~ 89 (92)
T cd06468 80 LAKKKEKKWE 89 (92)
T ss_pred EEeCCCCccC
Confidence 9999986554
No 12
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.45 E-value=3.6e-13 Score=106.05 Aligned_cols=82 Identities=27% Similarity=0.401 Sum_probs=75.7
Q ss_pred cccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEeecCC
Q psy6601 224 DWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAIKNGC 303 (459)
Q Consensus 224 DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~Ka~~ 303 (459)
|||||++.|+|+||.+.+.++...|.+.+..|.|.+..+ +++.|..+++|++.|| +++|++++.+.||+|+|.|++.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~-~~~~~~~~~~L~~~I~--~~~s~~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP-GGSEYQLELDLFGPID--PEQSKVSVLPTKVEITLKKAEP 77 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC-CCCeEEEecccccccC--chhcEEEEeCeEEEEEEEcCCC
Confidence 899999999999999999999999999999888877763 5678999999999999 9999999999999999999998
Q ss_pred ccCCC
Q psy6601 304 TVSSH 308 (459)
Q Consensus 304 ~~~~h 308 (459)
..|++
T Consensus 78 ~~W~~ 82 (84)
T cd06466 78 GSWPS 82 (84)
T ss_pred CCCcc
Confidence 77765
No 13
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.41 E-value=6.7e-13 Score=101.52 Aligned_cols=77 Identities=27% Similarity=0.270 Sum_probs=70.2
Q ss_pred ecccccccCceEEEEEEeeecC--CCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEE
Q psy6601 221 CRLDWFQTGSTVVVSIFGKKYD--PLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAA 298 (459)
Q Consensus 221 CR~DwyQT~~~V~VSVyaKk~d--p~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l 298 (459)
||++||||.+.|.|.|+.+... ++...|.+++..|.|.+..+.+ ..|..+++|||.|| +++|++++.+.+++|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~-~~~~~~~~L~~~I~--~~~s~~~~~~~~i~i~L 77 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG-KEYLLEGELFGEID--PDESTWKVKDNKIEITL 77 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS-CEEEEEEEBSS-BE--CCCEEEEEETTEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC-ceEEEEEEEeeeEc--chhcEEEEECCEEEEEE
Confidence 7999999999999999998876 8999999999999999988544 99999999999999 99999999999999999
Q ss_pred ee
Q psy6601 299 IK 300 (459)
Q Consensus 299 ~K 300 (459)
.|
T Consensus 78 ~K 79 (79)
T PF04969_consen 78 KK 79 (79)
T ss_dssp EB
T ss_pred EC
Confidence 87
No 14
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.21 E-value=6.2e-11 Score=92.63 Aligned_cols=76 Identities=17% Similarity=0.174 Sum_probs=69.8
Q ss_pred ccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEeecCCc
Q psy6601 225 WFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAIKNGCT 304 (459)
Q Consensus 225 wyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~Ka~~~ 304 (459)
||||...|+|+|+++.+.++...|.+++..|.+.+ +.|..+++|++.|| +++|++++.+.|++|+|.|++..
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~------~~~~~~~~l~~~I~--~e~~~~~~~~~~l~i~L~K~~~~ 72 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF------PPYLFELDLAAPID--DEKSSAKIGNGVLVFTLVKKEPG 72 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC------CCEEEEEeCccccc--ccccEEEEeCCEEEEEEEeCCCC
Confidence 99999999999999999999999999998887755 46999999999999 99999999999999999999887
Q ss_pred cCCC
Q psy6601 305 VSSH 308 (459)
Q Consensus 305 ~~~h 308 (459)
.|++
T Consensus 73 ~W~~ 76 (78)
T cd06469 73 IWEA 76 (78)
T ss_pred cccc
Confidence 6654
No 15
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.16 E-value=2.1e-10 Score=87.96 Aligned_cols=80 Identities=23% Similarity=0.171 Sum_probs=73.4
Q ss_pred ccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEeecCC-
Q psy6601 225 WFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAIKNGC- 303 (459)
Q Consensus 225 wyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~Ka~~- 303 (459)
||||+..|+|+||.+.+.++...|.+++..|.|.+.. .++..|..++.|++.|| +++|.+++.+.+++|+|.|++.
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~-~~~~~~~~~~~L~~~I~--~~~s~~~~~~~~l~i~L~K~~~~ 77 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKG-GGGKEYLLEGELFGPID--PEESKWTVEDRKIEITLKKKEPG 77 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeC-CCCCceEEeeEccCccc--hhhcEEEEeCCEEEEEEEECCCC
Confidence 9999999999999999999999999999999888875 35688999999999999 9999999999999999999988
Q ss_pred ccCC
Q psy6601 304 TVSS 307 (459)
Q Consensus 304 ~~~~ 307 (459)
..|+
T Consensus 78 ~~W~ 81 (84)
T cd06463 78 EWWP 81 (84)
T ss_pred CCCc
Confidence 5554
No 16
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.07 E-value=7e-10 Score=95.20 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=71.0
Q ss_pred cccccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEeec
Q psy6601 222 RLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAIKN 301 (459)
Q Consensus 222 R~DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~Ka 301 (459)
.++|||+.+.|.|+|+.+. ....+|.+.+..|.+...-. ++..|..+++||+.|+ |++|++++.++||||.|+|+
T Consensus 3 ~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~-~g~~y~~~l~l~~~I~--pe~Sk~~v~~r~ve~~L~K~ 77 (106)
T cd00237 3 KTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG-DNVKIYNEIELYDRVD--PNDSKHKRTDRSILCCLRKG 77 (106)
T ss_pred cceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC-CCcEEEEEEEeecccC--cccCeEEeCCceEEEEEEeC
Confidence 3699999999999999996 67899999999998877433 4556999999999999 99999999999999999999
Q ss_pred CCc-cCCC
Q psy6601 302 GCT-VSSH 308 (459)
Q Consensus 302 ~~~-~~~h 308 (459)
+.. .|++
T Consensus 78 ~~~~~Wpr 85 (106)
T cd00237 78 KEGVAWPR 85 (106)
T ss_pred CCCCCCch
Confidence 755 4544
No 17
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=98.94 E-value=3.2e-09 Score=86.15 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=67.0
Q ss_pred ccccccCceEEEEEEe-eecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEec-ceeeeeEEee
Q psy6601 223 LDWFQTGSTVVVSIFG-KKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMM-HTKAGPAAIK 300 (459)
Q Consensus 223 ~DwyQT~~~V~VSVya-Kk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~-~TK~Ei~l~K 300 (459)
++||||.+.|.|+|+. +.+.+....|.+.+..|.|.+. +...| .+-+||+.|| ++.|+.++. +++++|.|.|
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~---~~~~~-~~g~L~~~I~--~d~Stw~i~~~~~l~i~L~K 74 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK---DQAPL-LEGKLYSSID--HESSTWIIKENKSLEVSLIK 74 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC---CCCeE-EeCcccCccc--ccCcEEEEeCCCEEEEEEEE
Confidence 6899999999999999 6888999999999999998762 22333 4668999999 999999986 5579999999
Q ss_pred cCCc-cCCC
Q psy6601 301 NGCT-VSSH 308 (459)
Q Consensus 301 a~~~-~~~h 308 (459)
++.. .|++
T Consensus 75 ~~~~~~W~~ 83 (85)
T cd06493 75 KDEGPTWPE 83 (85)
T ss_pred CCCCccccc
Confidence 9855 5553
No 18
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.81 E-value=1.3e-08 Score=80.79 Aligned_cols=80 Identities=23% Similarity=0.137 Sum_probs=68.1
Q ss_pred ccccccCceEEEEEEe-eecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecc-eeeeeEEee
Q psy6601 223 LDWFQTGSTVVVSIFG-KKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMH-TKAGPAAIK 300 (459)
Q Consensus 223 ~DwyQT~~~V~VSVya-Kk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~-TK~Ei~l~K 300 (459)
++|+||++.|.|+|.. +.+.++.-.|.+++..|.|.+.- ..+.....||+.|| +++|..++.+ +|++|+|.|
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~----~~~~l~~~L~~~I~--~~~s~w~~~~~~~v~i~L~K 74 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG----GEPLLDGELYAKVK--VDESTWTLEDGKLLEITLEK 74 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC----CCceEcCcccCcee--EcCCEEEEeCCCEEEEEEEE
Confidence 5899999999999965 67888899999999888876631 34667778999999 9999999999 999999999
Q ss_pred cCC-ccCCC
Q psy6601 301 NGC-TVSSH 308 (459)
Q Consensus 301 a~~-~~~~h 308 (459)
++. ..|++
T Consensus 75 ~~~~~~W~~ 83 (85)
T cd06467 75 RNEGEWWPS 83 (85)
T ss_pred CCCCccccc
Confidence 997 56654
No 19
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.55 E-value=2e-07 Score=69.04 Aligned_cols=74 Identities=20% Similarity=0.173 Sum_probs=68.7
Q ss_pred ccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCC------CCceeeeeeeeeeeeccccceeEEEecceeeeeEE
Q psy6601 225 WFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPE------EDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAA 298 (459)
Q Consensus 225 wyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~------~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l 298 (459)
||||++.|+|.|+.+.+.++.-.|.+++..|.|...... ...+|...+.|++.|| ++++++++.+.+++|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~--~~~~~~~~~~~~l~i~l 78 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVD--PEKSKASLENGVLEITL 78 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcC--HHHCEEEEECCEEEEEE
Confidence 999999999999999999999999999999999887743 3688999999999999 99999999999999999
Q ss_pred ee
Q psy6601 299 IK 300 (459)
Q Consensus 299 ~K 300 (459)
.|
T Consensus 79 ~K 80 (80)
T cd00298 79 PK 80 (80)
T ss_pred cC
Confidence 76
No 20
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=98.30 E-value=1.8e-06 Score=72.83 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=65.2
Q ss_pred cccccccCceEEEEE-EeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEeccee-eeeEEe
Q psy6601 222 RLDWFQTGSTVVVSI-FGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTK-AGPAAI 299 (459)
Q Consensus 222 R~DwyQT~~~V~VSV-yaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK-~Ei~l~ 299 (459)
+++|+||.+.|.|+| +-+.+....-.|.+.+..|.|.+. + ..+ .+=+||+.|+ ++.|+.++-..| ++|.|.
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g-~~~-l~G~L~~~I~--~destWtled~k~l~I~L~ 79 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---G-QEV-LKGKLFDSVV--ADECTWTLEDRKLIRIVLT 79 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---C-EEE-EcCcccCccC--cccCEEEEECCcEEEEEEE
Confidence 588999999999999 999999999999999999998872 2 222 2237999999 999999999999 599999
Q ss_pred ecCCc
Q psy6601 300 KNGCT 304 (459)
Q Consensus 300 Ka~~~ 304 (459)
|+...
T Consensus 80 K~~~~ 84 (93)
T cd06494 80 KSNRD 84 (93)
T ss_pred eCCCC
Confidence 99766
No 21
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=97.06 E-value=0.00031 Score=71.18 Aligned_cols=95 Identities=11% Similarity=-0.012 Sum_probs=85.2
Q ss_pred ceeecccccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeE
Q psy6601 218 QVKCRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPA 297 (459)
Q Consensus 218 ~v~CR~DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~ 297 (459)
...-|+||-||..+.++=||++.+-.+...+-+.+.+|.|.+..+...-.++-.+.|+-.|+ |+.++++++.-++|+.
T Consensus 174 ~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~--P~~~s~k~fsK~~e~~ 251 (368)
T COG5091 174 KMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVY--PDIRSIKSFSKRVEVH 251 (368)
T ss_pred cceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcC--cchhhhhhcchhheeh
Confidence 35677888888888888899999999999999999999999999877778899999999999 9999999999899999
Q ss_pred EeecCCccCCCCCCCCC
Q psy6601 298 AIKNGCTVSSHNPVKPP 314 (459)
Q Consensus 298 l~Ka~~~~~~h~~~Kp~ 314 (459)
|+|-+-++|---+..|.
T Consensus 252 l~KV~~v~W~~l~~~pa 268 (368)
T COG5091 252 LRKVEMVRWGGLNGRPA 268 (368)
T ss_pred hhhhhhhhhcccccCcc
Confidence 99999999988777763
No 22
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.67 E-value=0.0089 Score=49.72 Aligned_cols=78 Identities=21% Similarity=-0.001 Sum_probs=61.0
Q ss_pred cccccCceEEEEEEeee---cCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecc-eeeeeEEe
Q psy6601 224 DWFQTGSTVVVSIFGKK---YDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMH-TKAGPAAI 299 (459)
Q Consensus 224 DwyQT~~~V~VSVyaKk---~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~-TK~Ei~l~ 299 (459)
=|-||.+.|.|.|=... +.+..-.|.+.+..|.|.+. + ...-.+-+||+.|| ++.|+-.+-+ ..+.|+|.
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g-~~~~i~G~L~~~V~--~des~Wtled~~~l~i~L~ 75 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---G-QPPIIDGELYNEVK--VEESSWLIEDGKVVTVNLE 75 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---C-CceEEeCcccCccc--ccccEEEEeCCCEEEEEEE
Confidence 49999999999996532 56667788999998888663 2 24456679999999 9999999865 45999999
Q ss_pred ecCCccCC
Q psy6601 300 KNGCTVSS 307 (459)
Q Consensus 300 Ka~~~~~~ 307 (459)
|+....|+
T Consensus 76 K~~~~~wW 83 (87)
T cd06492 76 KINKMEWW 83 (87)
T ss_pred ECCCCccc
Confidence 99765443
No 23
>KOG3158|consensus
Probab=95.64 E-value=0.033 Score=53.22 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=68.4
Q ss_pred cccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEeecCC
Q psy6601 224 DWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAIKNGC 303 (459)
Q Consensus 224 DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~Ka~~ 303 (459)
-|+|+-+-|.++|-- .|.....|.+.+..|.+.-.-..++..|...|+||-.|| |++|..+..++=+=..++|+..
T Consensus 11 ~Waqr~~~vyltv~V--ed~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eId--pe~sk~k~~~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 11 KWAQRRDLVYLTVCV--EDAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEID--PEKSKHKRTSRSIFCILRKKEL 86 (180)
T ss_pred hhhhhcCeEEEEEEe--ccCccceeeccccEEEEEeccCCCceeeEEeeehhhhcC--HhhccccccceEEEEEEEcccc
Confidence 499999998888753 355566788888888888888788899999999999999 9999999999998888888877
Q ss_pred -ccCCC
Q psy6601 304 -TVSSH 308 (459)
Q Consensus 304 -~~~~h 308 (459)
..||.
T Consensus 87 ~~~Wpr 92 (180)
T KOG3158|consen 87 GEYWPR 92 (180)
T ss_pred ccccch
Confidence 66654
No 24
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.89 E-value=0.13 Score=44.51 Aligned_cols=87 Identities=17% Similarity=0.064 Sum_probs=61.9
Q ss_pred cccccccCceEEEEEEeee-c-CCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEeccee-eeeEE
Q psy6601 222 RLDWFQTGSTVVVSIFGKK-Y-DPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTK-AGPAA 298 (459)
Q Consensus 222 R~DwyQT~~~V~VSVyaKk-~-dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK-~Ei~l 298 (459)
+|=|.||-..|.|.|=.-. . ....-.|++.+..|.|.+.-.-+...| .+=+|++.|+ ++.|.-.+-.-| +.|+|
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~-i~G~L~~~V~--~des~Wtled~~~l~I~L 82 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVL-MEGEFTHKIN--TENSLWSLEPGKCVLLSL 82 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceE-EeCcccCccc--CccceEEEeCCCEEEEEE
Confidence 5779999999999995432 1 234456889999999888521111223 3337999999 999999987645 89999
Q ss_pred eecCCccCCCCCCC
Q psy6601 299 IKNGCTVSSHNPVK 312 (459)
Q Consensus 299 ~Ka~~~~~~h~~~K 312 (459)
.|... .|+++-.+
T Consensus 83 ~K~~~-~wW~~v~~ 95 (102)
T cd06495 83 SKCSE-VWWNAVLK 95 (102)
T ss_pred EECCC-cccchhhC
Confidence 99864 45555443
No 25
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=94.66 E-value=0.13 Score=42.18 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=59.8
Q ss_pred cccccccCceEEEEEEeeecCCCCcEEEecC-eEEEEEEecCC--------------CCceeeeeeeeeeeeccccceeE
Q psy6601 222 RLDWFQTGSTVVVSIFGKKYDPLRSKVLLSP-VRLKVDLYFPE--------------EDGNYQQDIELRGMLAHTIQEIL 286 (459)
Q Consensus 222 R~DwyQT~~~V~VSVyaKk~dp~~S~V~~~~-~~l~v~l~fp~--------------~~k~y~~~i~L~G~ID~~~~kS~ 286 (459)
|.|||.|++.++|.+..=.+.|+.-.|.++. ..|.|.-.-+. ...+|.+.|.|-..|| +++.+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~--~~~i~ 78 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENAD--ADEVK 78 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCC--HHHCE
Confidence 7899999999999999999999999999965 36666543221 1358999999999999 88777
Q ss_pred EEecceeeeeEEee
Q psy6601 287 CSMMHTKAGPAAIK 300 (459)
Q Consensus 287 ~~~~~TK~Ei~l~K 300 (459)
.+|-.==++|+|.|
T Consensus 79 A~~~nGvL~I~lPK 92 (92)
T cd06472 79 AFLENGVLTVTVPK 92 (92)
T ss_pred EEEECCEEEEEecC
Confidence 77665555665543
No 26
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=93.03 E-value=0.063 Score=39.32 Aligned_cols=27 Identities=30% Similarity=0.813 Sum_probs=19.6
Q ss_pred eecCCCcccccCCcccccCCCcccchhhhccCCCCcc
Q psy6601 107 VHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTH 143 (459)
Q Consensus 107 ~yHPG~PvFHDg~K~WSCCkkkttDF~eFL~i~GCt~ 143 (459)
.||||. |-+|. |+||++.. -..+||+.
T Consensus 7 ~yHP~~--~~~G~--W~CC~q~~------k~a~GC~~ 33 (36)
T smart00107 7 KYHPSF--WVDGK--WLCCQQSE------KNAPGCTP 33 (36)
T ss_pred ccCCCc--eeCCe--EccCCCcC------cCCCCCcc
Confidence 599997 55665 99998643 45678874
No 27
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=92.29 E-value=0.45 Score=38.90 Aligned_cols=76 Identities=14% Similarity=0.028 Sum_probs=59.3
Q ss_pred cccccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCC----------------CCceeeeeeeeeeeecccccee
Q psy6601 222 RLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPE----------------EDGNYQQDIELRGMLAHTIQEI 285 (459)
Q Consensus 222 R~DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~----------------~~k~y~~~i~L~G~ID~~~~kS 285 (459)
|.|+|+|++.++|.+..=.+.++.-.|.+....|.|.-.-.. ...+|++.|.|- .|| +++.
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~--~~~i 78 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVD--EEEI 78 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCC--HHHC
Confidence 689999999999999999999999999999888888554321 124688899885 577 7777
Q ss_pred EEEecceeeeeEEee
Q psy6601 286 LCSMMHTKAGPAAIK 300 (459)
Q Consensus 286 ~~~~~~TK~Ei~l~K 300 (459)
+.+|-.=-+.|+|.|
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 777766666666643
No 28
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=92.14 E-value=0.59 Score=36.37 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=62.3
Q ss_pred cccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCC-------------CCceeeeeeeeeeeeccccceeEEEec
Q psy6601 224 DWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPE-------------EDGNYQQDIELRGMLAHTIQEILCSMM 290 (459)
Q Consensus 224 DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~-------------~~k~y~~~i~L~G~ID~~~~kS~~~~~ 290 (459)
|++++++.++|.|..-.+.++.-.|.+....|.|.-.-.. ....|.+.|.|-..+| +++....+-
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd--~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVD--PDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcC--HHHcEEEEe
Confidence 6889999999999999999999999999988888754431 1578999999999999 888888887
Q ss_pred ceeeeeEEee
Q psy6601 291 HTKAGPAAIK 300 (459)
Q Consensus 291 ~TK~Ei~l~K 300 (459)
.--++|++.|
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 7667776643
No 29
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.72 Score=41.21 Aligned_cols=81 Identities=12% Similarity=-0.001 Sum_probs=71.2
Q ss_pred ecccccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCC--------------CceeeeeeeeeeeeccccceeE
Q psy6601 221 CRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEE--------------DGNYQQDIELRGMLAHTIQEIL 286 (459)
Q Consensus 221 CR~DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~--------------~k~y~~~i~L~G~ID~~~~kS~ 286 (459)
=.+|.|+|+..++|.+-.=.++++.-.|.+.+..|.|..--..+ .+.|++.|.|-..|| ++...
T Consensus 41 P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~--~~~~~ 118 (146)
T COG0071 41 PPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVD--PEVIK 118 (146)
T ss_pred CcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccccc--cccee
Confidence 46899999999999999999999999999999999988877432 478999999999999 88888
Q ss_pred EEecceeeeeEEeecCC
Q psy6601 287 CSMMHTKAGPAAIKNGC 303 (459)
Q Consensus 287 ~~~~~TK~Ei~l~Ka~~ 303 (459)
.++-.==+.|+|.|+.+
T Consensus 119 A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 119 AKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eEeeCcEEEEEEecccc
Confidence 88888889999988544
No 30
>KOG3260|consensus
Probab=90.70 E-value=0.58 Score=45.68 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=71.0
Q ss_pred ccccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeee-eeeeeeccccceeEEEecceeeeeEEeec
Q psy6601 223 LDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDI-ELRGMLAHTIQEILCSMMHTKAGPAAIKN 301 (459)
Q Consensus 223 ~DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i-~L~G~ID~~~~kS~~~~~~TK~Ei~l~Ka 301 (459)
+-|-|.+..|-+=|-.-.++-++..|+|.+..|.+++.- -..|.|...+ .|.-+|+ |++|+.++-.--|-|.++|-
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~d-lqGK~y~~~vnnLlk~I~--vEks~~kvKtd~v~I~~kkV 153 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHD-LQGKNYRMIVNNLLKPIS--VEKSSKKVKTDTVLILCKKV 153 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccceeeeeee-cCCcceeeehhhhccccC--hhhcccccccceEEEeehhh
Confidence 789999999999999999999999999999988887765 4678899887 5899999 99999999888888999776
Q ss_pred CCccC
Q psy6601 302 GCTVS 306 (459)
Q Consensus 302 ~~~~~ 306 (459)
..++|
T Consensus 154 e~~rw 158 (224)
T KOG3260|consen 154 ENTRW 158 (224)
T ss_pred hcccc
Confidence 66655
No 31
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=89.81 E-value=0.2 Score=35.91 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=15.6
Q ss_pred eecCCCcccccCCcccccCCCcccchhhhccCCCCcc
Q psy6601 107 VHHAGVPVFHEGLKFWSCCTKKTTEFSAFLEQEGCTH 143 (459)
Q Consensus 107 ~yHPG~PvFHDg~K~WSCCkkkttDF~eFL~i~GCt~ 143 (459)
.||||.-+ -..|+||+... ...+||+.
T Consensus 2 ~yHPg~~~----~g~W~CC~q~~------k~a~GC~~ 28 (32)
T PF00779_consen 2 KYHPGAWR----GGKWLCCKQTD------KSAPGCQP 28 (32)
T ss_dssp EE-SS-EE----TTCESSSS-SS------TTS--SEE
T ss_pred CcCCCccc----CCcCcCCCCcC------cCCCCCcc
Confidence 59999743 45799998664 45689975
No 32
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=89.75 E-value=2.2 Score=34.92 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=61.9
Q ss_pred cccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecC---CCC---------ceeeeeeeeeeeeccccceeEEEecc
Q psy6601 224 DWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFP---EED---------GNYQQDIELRGMLAHTIQEILCSMMH 291 (459)
Q Consensus 224 DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp---~~~---------k~y~~~i~L~G~ID~~~~kS~~~~~~ 291 (459)
||+++++.+.|.+-+-.++++.-.|.+....|.|.-... .++ ++|.+.|.|=..+| +++.+.+|-.
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd--~~~i~a~~~~ 78 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVD--PDKIKASYEN 78 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB---GGG-EEEETT
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCC--cceEEEEecC
Confidence 899999999999999999999999999888888776654 122 47999999999999 9998888888
Q ss_pred eeeeeEEeecCCc
Q psy6601 292 TKAGPAAIKNGCT 304 (459)
Q Consensus 292 TK~Ei~l~Ka~~~ 304 (459)
==+.|++.|....
T Consensus 79 GvL~I~~pk~~~~ 91 (102)
T PF00011_consen 79 GVLTITIPKKEEE 91 (102)
T ss_dssp SEEEEEEEBSSSC
T ss_pred CEEEEEEEccccc
Confidence 8889999775443
No 33
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=71.66 E-value=2.5 Score=43.81 Aligned_cols=46 Identities=28% Similarity=0.689 Sum_probs=37.7
Q ss_pred cccccCcCceeeCCCCccccceecCCCcccccCC---------cccccCCCcccchh
Q psy6601 86 KCKNNACKQSYEGPESLSTICVHHAGVPVFHEGL---------KFWSCCTKKTTEFS 133 (459)
Q Consensus 86 ~CkN~GCgq~F~~~eN~~~~C~yHPG~PvFHDg~---------K~WSCCkkkttDF~ 133 (459)
.| .-|++.|--.+-.-..|.|||-.|.|-++. -.+.||+++++-|+
T Consensus 263 ~C--srC~q~F~~~el~~~~C~yHp~~~~~~~~~~~~~~~~~~G~YpCC~q~~~rfe 317 (317)
T PF11822_consen 263 YC--SRCNQVFPCSELSTHHCRYHPESPVFPDNASSEDSPGLLGWYPCCGQKVYRFE 317 (317)
T ss_pred EC--ccCCcEeeHHHcccccccCCCCCcccCCcccccCcccceeeecccCCccccCC
Confidence 57 779999988877767899999999998743 23579999998885
No 34
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=71.14 E-value=17 Score=30.21 Aligned_cols=74 Identities=12% Similarity=0.030 Sum_probs=59.2
Q ss_pred cccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCC--C--CceeeeeeeeeeeeccccceeEEEe-cceeeeeEE
Q psy6601 224 DWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPE--E--DGNYQQDIELRGMLAHTIQEILCSM-MHTKAGPAA 298 (459)
Q Consensus 224 DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~--~--~k~y~~~i~L~G~ID~~~~kS~~~~-~~TK~Ei~l 298 (459)
|-+.|+..++|.+-...+.|+.-.|.+....|.|.---.. + .++|.+.|.|=..|| +++...++ -.=.+.|++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd--~e~v~A~l~~~GvL~I~~ 79 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVD--PTSVSSSLGEDGTLTIKA 79 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcC--HHHeEEEecCCCEEEEEe
Confidence 4567889999999999999999999998888888764421 1 268999999999999 88888876 455666665
Q ss_pred e
Q psy6601 299 I 299 (459)
Q Consensus 299 ~ 299 (459)
.
T Consensus 80 ~ 80 (81)
T cd06479 80 R 80 (81)
T ss_pred c
Confidence 3
No 35
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=70.66 E-value=16 Score=30.40 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=56.4
Q ss_pred ccccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCC---C----ceeeeeeeeeeeeccccceeEEEec-ceee
Q psy6601 223 LDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEE---D----GNYQQDIELRGMLAHTIQEILCSMM-HTKA 294 (459)
Q Consensus 223 ~DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~---~----k~y~~~i~L~G~ID~~~~kS~~~~~-~TK~ 294 (459)
.|+|.|.+.+.|.+.+-.+.|+.-.|.+....|.|.-..... . .+|.+.|.|=-.|| +++.+.++- .=-+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd--~~~v~A~~~~dGvL 80 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVD--PTAVTSSLSPDGIL 80 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCC--HHHcEEEECCCCeE
Confidence 488999999999999999999999999988788777655321 1 45999999999999 777766664 3333
Q ss_pred eeE
Q psy6601 295 GPA 297 (459)
Q Consensus 295 Ei~ 297 (459)
.|+
T Consensus 81 ~I~ 83 (86)
T cd06475 81 TVE 83 (86)
T ss_pred EEE
Confidence 333
No 36
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=61.70 E-value=4.2 Score=42.15 Aligned_cols=44 Identities=27% Similarity=0.658 Sum_probs=35.4
Q ss_pred cCccceeeCCCCCccceEeeCCCCccccCCc---------ccccccccccchH
Q psy6601 391 NACKQSYEGPESLSTICVHHAGVPVFHEGLK---------FWSCCTKKTTEFS 434 (459)
Q Consensus 391 ~GC~~~y~g~~s~~~~C~yHpG~PIFHEGmK---------~WSCCkrktsDF~ 434 (459)
.-|++.|.-.+-...-|.|||-.|.|=++.. -+.||++|++.|+
T Consensus 265 srC~q~F~~~el~~~~C~yHp~~~~~~~~~~~~~~~~~~G~YpCC~q~~~rfe 317 (317)
T PF11822_consen 265 SRCNQVFPCSELSTHHCRYHPESPVFPDNASSEDSPGLLGWYPCCGQKVYRFE 317 (317)
T ss_pred ccCCcEeeHHHcccccccCCCCCcccCCcccccCcccceeeecccCCccccCC
Confidence 4589999877766568999999999987542 3679999999885
No 37
>PHA03358 Alkaline exonuclease; Provisional
Probab=56.57 E-value=5.2 Score=33.82 Aligned_cols=26 Identities=23% Similarity=0.553 Sum_probs=21.6
Q ss_pred ccccccccc--------------cchHhhhcccceeeeee
Q psy6601 422 FWSCCTKKT--------------TEFSAFLHYTHYLLFLY 447 (459)
Q Consensus 422 ~WSCCkrkt--------------sDF~~FL~i~~~~~~~~ 447 (459)
+||||+||. -||.+|-.=+++|+-.-
T Consensus 4 l~SiC~RR~nPl~DV~G~~INl~eDFE~fS~eT~~Lia~~ 43 (75)
T PHA03358 4 LWSLCRRRVNSIGDVDGGIINLYNDYEEFSLETTKLIAAE 43 (75)
T ss_pred hhhhhhccCCcccccCCCEechHHHHHHHhhccceEEEec
Confidence 799999984 38999999999987543
No 38
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=56.47 E-value=41 Score=27.18 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=54.0
Q ss_pred ceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCC-------ceeeeeeeeeeeeccccceeEEEecc-eeeeeEEe
Q psy6601 230 STVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEED-------GNYQQDIELRGMLAHTIQEILCSMMH-TKAGPAAI 299 (459)
Q Consensus 230 ~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~-------k~y~~~i~L~G~ID~~~~kS~~~~~~-TK~Ei~l~ 299 (459)
..++|.+..-.+.|+.-.|.+....|.|.-...... ++|.+.|.|=..|| +++...++.. ==+.|++.
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd--~~~i~A~~~~~GvL~I~~P 82 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVD--PDSVTSSLSSDGVLTIEAP 82 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCC--hHHeEEEeCCCcEEEEEec
Confidence 478888999999999999999888888887764322 58999999999999 8887777765 55666554
No 39
>KOG4379|consensus
Probab=54.94 E-value=28 Score=38.49 Aligned_cols=81 Identities=14% Similarity=0.015 Sum_probs=51.7
Q ss_pred ecccccccCceEEEEEEeeec-CCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecc-eeeeeEE
Q psy6601 221 CRLDWFQTGSTVVVSIFGKKY-DPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMH-TKAGPAA 298 (459)
Q Consensus 221 CR~DwyQT~~~V~VSVyaKk~-dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~-TK~Ei~l 298 (459)
=-+=|-||.+.|.+++-.--- -...-.|.+..+.|.+-+.+ ..+ -+=+|++.|+| +.|.+.+-. -|+|+.|
T Consensus 290 p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~d---h~~--~~g~lyasv~h--e~s~~ii~ean~Le~sl 362 (596)
T KOG4379|consen 290 PSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHLD---HVI--FDGELYASVGH--ELSAFIIAEANGLELSL 362 (596)
T ss_pred ccceeeeccCcceEEEecccccccceEEEEecCceEEEEeee---eEE--eccchhhhccc--cchhhhhhhhccceEEE
Confidence 346799999999998743211 11111255666665544333 121 23468999996 778777766 7999999
Q ss_pred eec-CCccCCC
Q psy6601 299 IKN-GCTVSSH 308 (459)
Q Consensus 299 ~Ka-~~~~~~h 308 (459)
.|+ .+..||.
T Consensus 363 ~K~de~~twpr 373 (596)
T KOG4379|consen 363 TKADEIQTWPR 373 (596)
T ss_pred eecccccccch
Confidence 998 4555554
No 40
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=51.85 E-value=71 Score=26.40 Aligned_cols=72 Identities=8% Similarity=0.083 Sum_probs=52.3
Q ss_pred ccccccC-ceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCC-------------CceeeeeeeeeeeeccccceeEEE
Q psy6601 223 LDWFQTG-STVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEE-------------DGNYQQDIELRGMLAHTIQEILCS 288 (459)
Q Consensus 223 ~DwyQT~-~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~-------------~k~y~~~i~L~G~ID~~~~kS~~~ 288 (459)
+|-++++ +..+|.+..=.+.++.-.|.+....|.|.-.-... .++|.+.|.|-..|| +. ..+
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd--~~--~A~ 78 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVK--VK--GAE 78 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCce--EC--eeE
Confidence 4667875 89999999999999999999988888887443211 367999999988888 43 344
Q ss_pred ecceeeeeEE
Q psy6601 289 MMHTKAGPAA 298 (459)
Q Consensus 289 ~~~TK~Ei~l 298 (459)
+-.=-+.|+|
T Consensus 79 ~~~GvL~I~l 88 (90)
T cd06470 79 LENGLLTIDL 88 (90)
T ss_pred EeCCEEEEEE
Confidence 4444444444
No 41
>PHA03149 hypothetical protein; Provisional
Probab=49.67 E-value=9.2 Score=31.73 Aligned_cols=23 Identities=22% Similarity=0.506 Sum_probs=16.8
Q ss_pred ccccccccc-------------cchHhhhcccceeee
Q psy6601 422 FWSCCTKKT-------------TEFSAFLHYTHYLLF 445 (459)
Q Consensus 422 ~WSCCkrkt-------------sDF~~FL~i~~~~~~ 445 (459)
.||||+||+ -||+.| .-.+.||.
T Consensus 4 l~SiCkRr~nPlDV~G~~Inv~~DFE~f-sE~~~lL~ 39 (66)
T PHA03149 4 LCSICKRRPNPLDTEGKVINLPDDFEEL-SETEIMLA 39 (66)
T ss_pred eeeeecCCCCCccCCCcEecchhhhhhh-CccceEEE
Confidence 699999985 478887 55555553
No 42
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=46.46 E-value=77 Score=26.36 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=56.9
Q ss_pred ccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCC---CC----ceeeeeeeeeeeeccccceeEEEec-ceeeee
Q psy6601 225 WFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPE---ED----GNYQQDIELRGMLAHTIQEILCSMM-HTKAGP 296 (459)
Q Consensus 225 wyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~---~~----k~y~~~i~L~G~ID~~~~kS~~~~~-~TK~Ei 296 (459)
-+.|++.++|.+..-.+.|+.-.|.+....|.|.-...+ +. .+|.+.|.|=-.|| +++...++. .=-+.|
T Consensus 5 v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd--~~~i~A~~~~dGvL~I 82 (86)
T cd06497 5 VRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVD--QSAITCSLSADGMLTF 82 (86)
T ss_pred EEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCC--hHHeEEEeCCCCEEEE
Confidence 366888999999999999999999998888887754321 11 34999999999999 888877773 555666
Q ss_pred EEee
Q psy6601 297 AAIK 300 (459)
Q Consensus 297 ~l~K 300 (459)
++.|
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 6643
No 43
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=32.70 E-value=1.9e+02 Score=23.80 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=51.5
Q ss_pred ccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCC---C----CceeeeeeeeeeeeccccceeEEEec-ceeeeeEE
Q psy6601 227 QTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPE---E----DGNYQQDIELRGMLAHTIQEILCSMM-HTKAGPAA 298 (459)
Q Consensus 227 QT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~---~----~k~y~~~i~L~G~ID~~~~kS~~~~~-~TK~Ei~l 298 (459)
.|++.++|.+-.-.+.|+.-.|.+....|.|.---.+ + ..+|.+.|.|=..|| +++...++. .=-+.|++
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd--~~~i~A~~~~dGvL~I~~ 81 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVD--PAAITSSLSADGVLTISG 81 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcC--hHHeEEEECCCCEEEEEe
Confidence 3567888999999999999999998888877664321 1 145999999999999 777777764 33455554
No 44
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=31.99 E-value=1.8e+02 Score=24.13 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=52.6
Q ss_pred cCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCC--CC-----ceeeeeeeeeeeeccccceeEEEec-ceeeeeEEe
Q psy6601 228 TGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPE--ED-----GNYQQDIELRGMLAHTIQEILCSMM-HTKAGPAAI 299 (459)
Q Consensus 228 T~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~--~~-----k~y~~~i~L~G~ID~~~~kS~~~~~-~TK~Ei~l~ 299 (459)
+...+.|.+.+-.++|+.-.|.+....|.|.--..+ +. .+|.+.|.|=..|| +++.+.++- .=-+.|+|.
T Consensus 5 ~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd--~~~i~A~~~~dGvL~I~lP 82 (84)
T cd06498 5 EKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVD--PLTITSSLSPDGVLTVCGP 82 (84)
T ss_pred CCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCC--hHHcEEEeCCCCEEEEEEe
Confidence 466788888888999999889888888887764321 11 34999999999999 888777774 555666664
Q ss_pred e
Q psy6601 300 K 300 (459)
Q Consensus 300 K 300 (459)
|
T Consensus 83 k 83 (84)
T cd06498 83 R 83 (84)
T ss_pred C
Confidence 4
No 45
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=31.16 E-value=18 Score=26.41 Aligned_cols=9 Identities=22% Similarity=0.715 Sum_probs=8.0
Q ss_pred ccccccccc
Q psy6601 422 FWSCCTKKT 430 (459)
Q Consensus 422 ~WSCCkrkt 430 (459)
+||||+||.
T Consensus 4 ~~s~Ckrr~ 12 (32)
T PF10813_consen 4 LLSMCKRRH 12 (32)
T ss_pred eeeeeeccC
Confidence 799999985
No 46
>PRK10743 heat shock protein IbpA; Provisional
Probab=29.89 E-value=2e+02 Score=26.17 Aligned_cols=76 Identities=8% Similarity=0.046 Sum_probs=58.1
Q ss_pred cccccc-cCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCC------------CceeeeeeeeeeeeccccceeEEE
Q psy6601 222 RLDWFQ-TGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEE------------DGNYQQDIELRGMLAHTIQEILCS 288 (459)
Q Consensus 222 R~DwyQ-T~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~------------~k~y~~~i~L~G~ID~~~~kS~~~ 288 (459)
++|-|+ |++.++|.+..=.++|+.-.|.++...|.|.-.-..+ ...|.+.|.|=..|| +++ .+
T Consensus 36 ~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd--~~~--A~ 111 (137)
T PRK10743 36 PYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIH--VRG--AN 111 (137)
T ss_pred cEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcc--cCc--CE
Confidence 468884 8999999999999999999999988888776543211 146999999999999 663 55
Q ss_pred ecceeeeeEEeec
Q psy6601 289 MMHTKAGPAAIKN 301 (459)
Q Consensus 289 ~~~TK~Ei~l~Ka 301 (459)
|-.=-+.|+|.|+
T Consensus 112 ~~dGVL~I~lPK~ 124 (137)
T PRK10743 112 LVNGLLYIDLERV 124 (137)
T ss_pred EeCCEEEEEEeCC
Confidence 5566677888664
No 47
>KOG2265|consensus
Probab=22.89 E-value=1.7e+02 Score=28.62 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=58.8
Q ss_pred cccccccCceEEEEE-Eeeec-CCCCcEEEecCeEEEEEEecCCCCceeeeeeeeeeeeccccceeEEEecceeeeeEEe
Q psy6601 222 RLDWFQTGSTVVVSI-FGKKY-DPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAI 299 (459)
Q Consensus 222 R~DwyQT~~~V~VSV-yaKk~-dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i~L~G~ID~~~~kS~~~~~~TK~Ei~l~ 299 (459)
-+-|+||=..|.|-| +.++. ..-.-.|.+-+..|.|-+.- +. --.+=+|+-.|+ ++.|.-.+=.-|+-+++-
T Consensus 20 ~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg---~~-~ildG~L~~~vk--~des~WtiEd~k~i~i~l 93 (179)
T KOG2265|consen 20 KYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKG---QP-PILDGELSHSVK--VDESTWTIEDGKMIVILL 93 (179)
T ss_pred ceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCC---CC-ceecCccccccc--cccceEEecCCEEEEEEe
Confidence 467999999999985 45555 34444566666666665533 11 234457888899 999999999999766655
Q ss_pred e-cCCccCCCCCCCC
Q psy6601 300 K-NGCTVSSHNPVKP 313 (459)
Q Consensus 300 K-a~~~~~~h~~~Kp 313 (459)
+ .+-+.|+-+-.+-
T Consensus 94 ~K~~~~eWW~~ll~g 108 (179)
T KOG2265|consen 94 KKSNKMEWWDSLLEG 108 (179)
T ss_pred eccchHHHHHHHHcC
Confidence 5 4447777766653
No 48
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=22.22 E-value=1.8e+02 Score=23.73 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=37.2
Q ss_pred cccccCceEEEEEEeeecCCCCcEEEecCeEEEEEEecCCCCceeeeee---eeeeeec
Q psy6601 224 DWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDI---ELRGMLA 279 (459)
Q Consensus 224 DwyQT~~~V~VSVyaKk~dp~~S~V~~~~~~l~v~l~fp~~~k~y~~~i---~L~G~ID 279 (459)
.-|+-|.+|.+.+|+...+ .. .-......+.|.|.-|.++..++... .-+|.++
T Consensus 9 ~iYrPGetV~~~~~~~~~~-~~-~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~ 65 (99)
T PF01835_consen 9 PIYRPGETVHFRAIVRDLD-ND-FKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFS 65 (99)
T ss_dssp SEE-TTSEEEEEEEEEEEC-TT-CSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEE
T ss_pred cCcCCCCEEEEEEEEeccc-cc-cccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEE
Confidence 3589999999999999888 32 22234467778888887777666666 2366666
No 49
>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e.g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.
Probab=21.78 E-value=23 Score=32.15 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=16.5
Q ss_pred ceecCCCcccccCCcccccCCCcccch
Q psy6601 106 CVHHAGVPVFHEGLKFWSCCTKKTTEF 132 (459)
Q Consensus 106 C~yHPG~PvFHDg~K~WSCCkkkttDF 132 (459)
+.-|.|.++ .++|+||+-+.+=|
T Consensus 97 s~q~~g~~~----e~~W~cyg~kCYYF 119 (119)
T PF08391_consen 97 SSQHTGKPC----EKHWFCYGVKCYYF 119 (119)
T ss_dssp -TTSTT-EE----ECEEEEETTEEEEE
T ss_pred hhhcCCCCC----CCceeeeCceeeeC
Confidence 666788877 67999999887644
Done!