RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6601
(459 letters)
>2xcm_E RAR1, cytosolic heat shock protein 90; chaperone-protein binding
complex, stress response; HET: ADP; 2.20A {Arabidopsis
thaliana}
Length = 74
Score = 97.0 bits (241), Expect = 5e-25
Identities = 26/71 (36%), Positives = 34/71 (47%)
Query: 78 SSSIPLGTKCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLE 137
I CKN C Q+++ ++ T C HH G VFH+ L+ W CC EF F+E
Sbjct: 3 VIDINQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFME 62
Query: 138 QEGCTHGQHVW 148
CT G H
Sbjct: 63 IPPCTKGWHSS 73
Score = 81.5 bits (201), Expect = 2e-19
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 379 SSSIPLGTKCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
I CKN C Q+++ ++ T C HH G VFH+ L+ W CC EF F+
Sbjct: 3 VIDINQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFM 61
>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 75
Score = 96.2 bits (239), Expect = 8e-25
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 78 SSSIPLGTKCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFLE 137
S S + C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL
Sbjct: 3 SGSSGMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLS 62
Query: 138 QEGCTHGQHVWFK 150
GCT G+H K
Sbjct: 63 IVGCTKGRHNSEK 75
Score = 80.0 bits (197), Expect = 6e-19
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 379 SSSIPLGTKCKNNACKQSYEGPESLSTICVHHAGVPVFHEGLKFWSCCTKKTTEFSAFL 437
S S + C N C Q ++ + C +H GVPVFH+ LK WSCC ++TT+FS FL
Sbjct: 3 SGSSGMALLCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFL 61
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 58.7 bits (142), Expect = 3e-11
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 220 KCRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRG 276
K R +++Q VVV++F K + L V + P ED Y L G
Sbjct: 2 KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGED-AYYLQPRLFG 57
Score = 42.1 bits (99), Expect = 2e-05
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 154 VNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIP 186
+ DK +L +K+EI L KA++ +W+ L+
Sbjct: 59 IIPDKCKYEVLSTKIEICLAKADIITWASLEHG 91
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 54.2 bits (130), Expect = 2e-09
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 218 QVKCRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRG 276
Q K + DW+QT S VV+++ K V S L + P + +Y +EL
Sbjct: 7 QSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGE-DYNLKLELLH 64
Score = 40.7 bits (95), Expect = 1e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 154 VNVDKSSVFMLGSKVEISLHKAEVGSWSKL 183
+ ++S+ +L +K+EI L K E W KL
Sbjct: 66 IIPEQSTFKVLSTKIEIKLKKPEAVRWEKL 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 7e-05
Identities = 66/375 (17%), Positives = 119/375 (31%), Gaps = 114/375 (30%)
Query: 16 ERYVPDKQSVQEVIEVRAPEPKAMERPSKDTPMVELKPTISQ--NLLEQVKNLKPLSHLD 73
+ Y V ++I+ A + + + T + + +Q N+LE ++N P + D
Sbjct: 178 QTYHV---LVGDLIKFSA---ETLSELIRTTL--DAEKVFTQGLNILEWLEN--PSNTPD 227
Query: 74 RGDLSS---SIPL-G-TKCKN--NACKQSYEGP----ESLSTICVHHAGVPV-------- 114
+ L S S PL G + + K P L H G+
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD 287
Query: 115 ----FHEGLK------FW--SCCTKKT--TEFSAFLEQEGCTHGQHVWFKKT----IVNV 156
F ++ F+ C + T + ++ + + V + I N+
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV---PSPMLSISNL 344
Query: 157 DKSSVFML----------GSKVEISLH---KAEV--GSWSKLDIP-SLTIANHGDEKDKE 200
+ V G +VEISL K V G P SL N K K
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP------PQSLYGLNLTLRKAKA 398
Query: 201 DTSTNEVQH-ALDTAEKGQVKCRLDWFQTGSTVVVSI-FGKKY----------DPLRSKV 248
+ + Q + K + R F + V+ F D +++ V
Sbjct: 399 PSGLD--QSRIPFSERKLKFSNR---F-----LPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 249 LLSPVRLKVDLYFPEEDGNYQQDI-ELRGMLAHTIQEILCSM-------MHTKA------ 294
+ +++ +Y DG D+ L G ++ I + + + KA
Sbjct: 449 SFNAKDIQIPVYDT-FDG---SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 295 GPAAIKNGCTVSSHN 309
GP ++ N
Sbjct: 505 GPGGASGLGVLTHRN 519
Score = 36.2 bits (83), Expect = 0.028
Identities = 74/512 (14%), Positives = 131/512 (25%), Gaps = 219/512 (42%)
Query: 66 LKPLSHLDRGDLSSSIPLGTKCKNNACKQSYEGPESLSTICVH-HAGVPVFHEGLK--FW 122
+PL+ L G L + + P + A L+ F
Sbjct: 6 TRPLT-LSHGSLEHVLLV---------------PTAS-----FFIASQ------LQEQFN 38
Query: 123 SCCTKKTTEFSA-------------FL-----EQEGCTHGQHVWFKKTIVNVDKSSVFML 164
+ T F+A FL E GQ + ++ ++
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC-YLE 97
Query: 165 GSKVEISLHKAEVGSWSKLDIPSLTIANHGDEKDKEDTSTNEVQ---HALDTAEKGQVKC 221
G+ DI +L + + ++ A A++ K
Sbjct: 98 GN-----------------DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 222 R----LDWFQTGSTVVVSIFG----------------KKYDPLR-------SKVL--LSP 252
G+ +V+IFG + Y L ++ L L
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 253 VRLKVDLYF----------------PEED-----------------GNYQQDIELRGMLA 279
L + F P++D +Y +L G
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 280 HTIQEILCSM-MHTKAGPAAI------------KN-----------GCTVSSHNPVKPPE 315
++ L H++ A+ + G P
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 316 PERYVPDKQSVQEVIEVRAPEPKAMERPSKDTPM--VE-LKPTISQNLLEQV-KNLKPLS 371
P +++ +E P +PM + L Q+ + + +L
Sbjct: 321 PS-------ILEDSLENNEGVP---------SPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 372 HLDRGDLSSSIPLGTKCKNNACKQ---SYEG-PESLSTICVH----HAG-------VPVF 416
+ I L N K S G P+SL + + A +P F
Sbjct: 365 QV-------EISL-----VNGAKNLVVS--GPPQSLYGLNLTLRKAKAPSGLDQSRIP-F 409
Query: 417 HE-GLKFWSCCTKKTTEF---SA-FLHYTHYL 443
E LKF + F ++ F H +H L
Sbjct: 410 SERKLKF-------SNRFLPVASPF-H-SHLL 432
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.15.1.3
Length = 134
Score = 41.6 bits (97), Expect = 8e-05
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 154 VNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIPSLTIAN 192
+ ++ + S+++I L K + W L+ P+ +
Sbjct: 89 IEPEQCTFCFTASRIDICLRKRQSQRWGGLEAPAARVGG 127
Score = 38.9 bits (90), Expect = 7e-04
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 220 KCRLDWFQTG-STVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNY 268
+ D ++ G +VVV ++ K+ S+VL + F DGN+
Sbjct: 19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLI--FQTRDGNF 66
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich;
2.49A {Homo sapiens} SCOP: b.15.1.2
Length = 125
Score = 32.2 bits (73), Expect = 0.12
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 225 WFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIEL 274
W+ V + + D V +L ++ + +I+L
Sbjct: 8 WYDRRDYVFIEFCVE--DSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDL 55
Score = 26.8 bits (59), Expect = 7.4
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 125 CTKKTTEFSAFLEQEGCTHGQHVWFKKTIVNVDKSSVFMLGSKVEISLHKAEVGSW 180
K FS + H + I + + S + L K E G
Sbjct: 31 FEKSKLTFSCLGGSDNFKHLNEIDLFHCI-DPNDSKHKRTDRSILCCLRKGESGQS 85
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.14
Identities = 6/38 (15%), Positives = 19/38 (50%), Gaps = 12/38 (31%)
Query: 21 DKQSVQEV---IEVRAPEPKAMERPSKDTPMVELKPTI 55
+KQ+++++ +++ A + P + +K T+
Sbjct: 18 EKQALKKLQASLKLYADD---------SAPALAIKATM 46
Score = 32.2 bits (72), Expect = 0.14
Identities = 6/38 (15%), Positives = 19/38 (50%), Gaps = 12/38 (31%)
Query: 322 DKQSVQEV---IEVRAPEPKAMERPSKDTPMVELKPTI 356
+KQ+++++ +++ A + P + +K T+
Sbjct: 18 EKQALKKLQASLKLYADD---------SAPALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.41
Identities = 40/261 (15%), Positives = 72/261 (27%), Gaps = 79/261 (30%)
Query: 201 DTSTNEVQHA----LDTAEKGQVK---CR--LDWFQT--GSTVVVSIFGKKYDPLRSKVL 249
D T E Q+ L E V C+ D ++ + I K + L
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 250 LSPVRLK----VDLYFPE-EDGNYQQDIELRGMLAHTIQEILCSMMHTKAGPAAIKNGCT 304
+ K V + E NY L I+ + P+ +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINY-------KFLMSPIKT-------EQRQPSMMTRM-Y 112
Query: 305 VSSHNPVK---PPEPERYVPDKQSVQEV----IEVRAPEP-----------K---AMERP 343
+ + + + V Q ++ +E+R P K A++
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALD-V 170
Query: 344 SKDTPMVELKP------TISQ-----NLLEQVKNLKPLSHLD-----RGDLSSSIPLGT- 386
+ + +LE ++ L L +D R D SS+I L
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIH 228
Query: 387 ----KCKNNACKQSYEGPESL 403
+ + + Y L
Sbjct: 229 SIQAELRRLLKSKPY--ENCL 247
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative,
center for eukaryotic structural genomics, CESG,
structural genomics; NMR {Arabidopsis thaliana}
Length = 150
Score = 28.4 bits (63), Expect = 3.1
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 125 CTKKTTEFSAFLEQEGCTHGQHVWFKKTIVNVDKSSVFMLGSKVEISLHKAEVGSWSKL 183
C + + L +G + I+ + + + S+ K E W++L
Sbjct: 32 CEPQGLFSFSALGAQGERFEFSLELYGKIM--TEYRKNVGLRNIIFSIQKEERSWWTRL 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.398
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,671,288
Number of extensions: 379519
Number of successful extensions: 787
Number of sequences better than 10.0: 1
Number of HSP's gapped: 786
Number of HSP's successfully gapped: 20
Length of query: 459
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 362
Effective length of database: 3,993,456
Effective search space: 1445631072
Effective search space used: 1445631072
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.9 bits)