RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6601
         (459 letters)



>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 220 KCRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRG 276
           K + DW+QT S VV+++  K        V  S   L   +  P  + +Y   +EL  
Sbjct: 2   KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGE-DYNLKLELLH 57



 Score = 35.3 bits (81), Expect = 0.002
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 154 VNVDKSSVFMLGSKVEISLHKAEVGSWSKLD 184
           +  ++S+  +L +K+EI L K E   W KL+
Sbjct: 59  IIPEQSTFKVLSTKIEIKLKKPEAVRWEKLE 89


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
           USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 154 VNVDKSSVFMLGSKVEISLHKAEVGSWSKLDIPS 187
           +  ++ +     S+++I L K +   W  L+ P+
Sbjct: 89  IEPEQCTFCFTASRIDICLRKRQSQRWGGLEAPA 122



 Score = 30.7 bits (69), Expect = 0.16
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 219 VKCRLDWFQTG-STVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQ 270
              + D ++ G  +VVV ++ K+     S+VL       +   F   DGN+ +
Sbjct: 18  AFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLI--FQTRDGNFLR 68


>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 110

 Score = 33.5 bits (76), Expect = 0.010
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 2/52 (3%)

Query: 225 WFQTGSTVVVSIFGKKYDPLRSKVLLSPVRLKVDLYFPEEDGNYQQDIELRG 276
           W+     V +    +  D     V     +L        ++  +  +I+L  
Sbjct: 8   WYDRRDYVFIEFCVE--DSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFH 57



 Score = 25.8 bits (56), Expect = 5.4
 Identities = 11/62 (17%), Positives = 14/62 (22%), Gaps = 3/62 (4%)

Query: 120 KFWSCCTKKTTEFSAFLEQEGCTHGQHV-WFKKTIVNVDKSSVFMLGSKVEISLHKAEVG 178
                  K    FS     +   H   +  F     N   S        +   L K E G
Sbjct: 26  DVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPN--DSKHKRTDRSILCCLRKGESG 83

Query: 179 SW 180
             
Sbjct: 84  QS 85


>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange
           factor 12 {Human (Homo sapiens), gamma isoform [TaxId:
           9606]}
          Length = 114

 Score = 25.8 bits (56), Expect = 6.3
 Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 1/30 (3%)

Query: 417 HEGLKFWSCCTKKTTEFSAFLHYTHYLLFL 446
           HEG   W     KT +    L     L+ L
Sbjct: 3   HEGPLVWKVNRDKTIDLYTLL-LEDILVLL 31


>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
           C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 193

 Score = 25.8 bits (56), Expect = 9.7
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 26/101 (25%)

Query: 196 EKDKEDTSTNEVQHALDTAEKGQVKCRLDWFQTGSTVVVSIFGKKYDPLRSKVLLSP--- 252
             +K   + +E  HA+                      VS      +P+  ++ + P   
Sbjct: 4   PAEKRIIAYHEAGHAV----------------------VSTVVPNGEPV-HRISIIPRGY 40

Query: 253 VRLKVDLYFPEEDGNYQQDIELRGMLAHTIQEILCSMMHTK 293
             L   L+ PEED       EL   L   +       +   
Sbjct: 41  KALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFG 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,650,415
Number of extensions: 75438
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 11
Length of query: 459
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,199,356
Effective search space: 444961076
Effective search space used: 444961076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.0 bits)