BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6602
(367 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328696467|ref|XP_003240033.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 459
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/195 (92%), Positives = 187/195 (95%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E QETTARLLFMAVRWVRCLAPFQTLSK DQLLLLQESWKELFLLHLAQWSIPWDLS L
Sbjct: 264 EVLQETTARLLFMAVRWVRCLAPFQTLSKHDQLLLLQESWKELFLLHLAQWSIPWDLSPL 323
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+N EKARERLP DD +VNNE+K+IQEILARFRQLSPDGSECGCMKAVILFTPETPGL+DA
Sbjct: 324 LNSEKARERLPADDTKVNNEMKIIQEILARFRQLSPDGSECGCMKAVILFTPETPGLIDA 383
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLP+LRAVRQ+TIERLFFKETIGDIP
Sbjct: 384 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPNLRAVRQATIERLFFKETIGDIP 443
Query: 269 IQRLLGDMYTMEKSY 283
IQRLLGDMY MEKSY
Sbjct: 444 IQRLLGDMYHMEKSY 458
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/84 (94%), Positives = 82/84 (97%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ETPGL+DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLP+LRAVRQ+TIERLFF
Sbjct: 376 ETPGLIDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPNLRAVRQATIERLFF 435
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
KETIGDIPIQRLLGDMY MEKSY
Sbjct: 436 KETIGDIPIQRLLGDMYHMEKSYA 459
>gi|242024443|ref|XP_002432637.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
gi|212518107|gb|EEB19899.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
Length = 438
Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 203/367 (55%), Positives = 228/367 (62%), Gaps = 102/367 (27%)
Query: 1 VQHERGPRKPKIHN-------------------AHHQDSKL------------------- 22
VQHERGPRKPK HN HH + L
Sbjct: 87 VQHERGPRKPK-HNITSKENNHHHHHHHHHPVLMHHSNPPLSNSAEQPSAKQPPPPPPPP 145
Query: 23 -----EPHNPH---------HSPDLLPPNGISSVKIPPTVLYPPSGLKSPPPPSHHHPSM 68
+P NPH S +L+P +S P + PSG PPS +M
Sbjct: 146 GIVFPQPINPHMHYLQSPIKTSQELIP----ASENFVPNITPIPSG-----PPSA--AAM 194
Query: 69 FLATHQPPPHPGLLQILMSAEKCQE----------------------------------- 93
FLA HQPPP PGLLQILM+AEKCQE
Sbjct: 195 FLA-HQPPP-PGLLQILMTAEKCQELLWNTKLSTTERVGVPQSSPLALQPLSPSWEVLQE 252
Query: 94 TTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK 153
TTARLLF AVRWVR L PFQTLS+ DQLLLLQESWKELFLL+LAQWSIPWDL+ L+N K
Sbjct: 253 TTARLLFTAVRWVRSLGPFQTLSRHDQLLLLQESWKELFLLYLAQWSIPWDLTTLLNSSK 312
Query: 154 ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEM 213
AR+RLP D++ N EIK IQE++ RFRQLSPD SECGCMKAVILFTPET GL D QPVEM
Sbjct: 313 ARDRLPQDEITAN-EIKTIQELIGRFRQLSPDLSECGCMKAVILFTPETAGLCDVQPVEM 371
Query: 214 LQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLL 273
LQDQAQCILGDY+R RY RQPTRFGRLLL+LP+LR++RQ T+E+LFFKETIG+IPIQRLL
Sbjct: 372 LQDQAQCILGDYIRNRYPRQPTRFGRLLLILPNLRSIRQLTVEQLFFKETIGEIPIQRLL 431
Query: 274 GDMYTME 280
GDMY ME
Sbjct: 432 GDMYHME 438
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 73/80 (91%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCILGDY+R RY RQPTRFGRLLL+LP+LR++RQ T+E+LFF
Sbjct: 359 ETAGLCDVQPVEMLQDQAQCILGDYIRNRYPRQPTRFGRLLLILPNLRSIRQLTVEQLFF 418
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG+IPIQRLLGDMY ME
Sbjct: 419 KETIGEIPIQRLLGDMYHME 438
>gi|91077386|ref|XP_975255.1| PREDICTED: similar to Dissatisfaction (Dsf) [Tribolium castaneum]
gi|270002823|gb|EEZ99270.1| dissatisfaction [Tribolium castaneum]
Length = 483
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 156/195 (80%), Positives = 169/195 (86%), Gaps = 1/195 (0%)
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC 151
QETTARLLFMAVRWVRCLAPFQTLSK DQLLLLQESWKELFLLHLAQWS+PWDLS L+ C
Sbjct: 289 QETTARLLFMAVRWVRCLAPFQTLSKHDQLLLLQESWKELFLLHLAQWSVPWDLSALLGC 348
Query: 152 EKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
+ARERLP D + EIK IQEI+ RFRQ+SPDGSECGCMKA+ILFTPET GL D QPV
Sbjct: 349 PQARERLPAD-IHTATEIKTIQEIMCRFRQISPDGSECGCMKAIILFTPETAGLCDVQPV 407
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
EMLQDQAQCILGDYVR RY RQPTRFGRLLL++PSLRA+R T+E LFFKETIG+IPI +
Sbjct: 408 EMLQDQAQCILGDYVRTRYPRQPTRFGRLLLLVPSLRAIRSLTVELLFFKETIGEIPITQ 467
Query: 272 LLGDMYTMEKSYETP 286
LLGDMY MEK P
Sbjct: 468 LLGDMYYMEKCTSGP 482
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/81 (80%), Positives = 71/81 (87%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCILGDYVR RY RQPTRFGRLLL++PSLRA+R T+E LFF
Sbjct: 397 ETAGLCDVQPVEMLQDQAQCILGDYVRTRYPRQPTRFGRLLLLVPSLRAIRSLTVELLFF 456
Query: 344 KETIGDIPIQRLLGDMYTMEK 364
KETIG+IPI +LLGDMY MEK
Sbjct: 457 KETIGEIPITQLLGDMYYMEK 477
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 53/116 (45%), Gaps = 32/116 (27%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHS--------PDLLPPNGISSVKIPPTVLYPP 52
VQHERGPRKPK+ + +Q +++P HS D LP + SS+ P++ PP
Sbjct: 109 VQHERGPRKPKLQASSNQ--QMQPSPVGHSLQQHMTTVGDKLPTSS-SSLHFAPSIFGPP 165
Query: 53 SGLKS---------------PPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQE 93
LK+ PPS HP LL ILMSAEKCQE
Sbjct: 166 RPLKALTLPPPPVPSPTHIDALPPSMFHPPTLPPPPG------LLHILMSAEKCQE 215
>gi|332025033|gb|EGI65220.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 443
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 169/358 (47%), Positives = 197/358 (55%), Gaps = 77/358 (21%)
Query: 1 VQHERGPRKPKIH------NAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSG 54
VQHERGPRKPK H H Q S + HS + + + PP VL P
Sbjct: 83 VQHERGPRKPKPHAIISSEKQHQQQSPIVTQLSPHSATSVHSDRLRPALAPPYVLSPHRR 142
Query: 55 LK-----SPPPPSHH------------------HPSMFLATHQPP------PHPGLLQIL 85
L+ +P P HP +Q P P LLQIL
Sbjct: 143 LRCDQRFTPYPRPMALVQKPPEESPSPVPLILPHPRTTTTLYQAATTVSLAPQPPLLQIL 202
Query: 86 MSAEKCQE------------------------------------------TTARLLFMAV 103
MSAE+CQE TTARLLFMAV
Sbjct: 203 MSAEECQELVWNARLQPTAEYPMEQIETETSRSPTGTVQSFSPTWEMLQETTARLLFMAV 262
Query: 104 RWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV 163
RWVRCL PFQT+SK DQLLLL+ SW +LFLLHLAQWS+ WD++ L+ E+ R RLP DD
Sbjct: 263 RWVRCLPPFQTISKDDQLLLLERSWTQLFLLHLAQWSVSWDITALLEDEQVRSRLPTDDN 322
Query: 164 RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILG 223
N E+ LIQ I+ RFRQLSPD ECGCMKAV LFTPET GL QP+E+LQDQAQ IL
Sbjct: 323 PTNQELVLIQAIICRFRQLSPDFGECGCMKAVALFTPETVGLHAVQPIEILQDQAQRILV 382
Query: 224 DYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
DY R RY +QP+R GRL++++ LR V T+ERLFF ETIG+IPI RLL DMY MEK
Sbjct: 383 DYTRSRYPQQPSRIGRLMILVGYLRCVSSKTVERLFFHETIGEIPISRLLVDMYQMEK 440
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 61/81 (75%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL QP+E+LQDQAQ IL DY R RY +QP+R GRL++++ LR V T+ERLFF
Sbjct: 360 ETVGLHAVQPIEILQDQAQRILVDYTRSRYPQQPSRIGRLMILVGYLRCVSSKTVERLFF 419
Query: 344 KETIGDIPIQRLLGDMYTMEK 364
ETIG+IPI RLL DMY MEK
Sbjct: 420 HETIGEIPISRLLVDMYQMEK 440
>gi|307203729|gb|EFN82689.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 547
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 174/363 (47%), Positives = 200/363 (55%), Gaps = 88/363 (24%)
Query: 1 VQHERGPRKPKIHN-----AHHQDS----KLEPHN--PHHSPDLLPPNGISSVKIPPTVL 49
VQHERGPRKPK H+ H Q S +L PH+ P H+ L P PP VL
Sbjct: 188 VQHERGPRKPKPHSIISEKQHQQQSSIVTQLSPHSGGPVHNDRLRP------ALAPPYVL 241
Query: 50 YPPSGLK-----SPPPPSHH------------------HPSMFLATHQPP------PHPG 80
P L+ +P P HP +Q P
Sbjct: 242 SPHRRLRCDQRFTPYPRPMALVQKPPEESPSPVPLVLPHPRTTTTLYQAATTVSLASQPS 301
Query: 81 LLQILMSAEKCQE------------------------------------------TTARL 98
LLQILMSAE+CQE TTARL
Sbjct: 302 LLQILMSAEECQELVWNARLQPTTEYPIEQMETETSHSPTGTVQSLSPTWEMLQETTARL 361
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LFMAVRWVRCL PFQT+SK DQLLLL+ SW +LFLLHLAQWSI WD++ L+ E+ R RL
Sbjct: 362 LFMAVRWVRCLPPFQTISKDDQLLLLERSWTQLFLLHLAQWSISWDITALLEDEQVRSRL 421
Query: 159 PPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQA 218
P DD N E+ LIQ I+ RFRQLSPD ECGCMKAV LFTPET GL QP+E+LQDQA
Sbjct: 422 PADDNPTNQELVLIQAIICRFRQLSPDFGECGCMKAVALFTPETVGLHAVQPIEILQDQA 481
Query: 219 QCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 278
Q IL DY R RY +QP R GRL++++ LR V T+ERLFF ETIG+IPI RLL DMY
Sbjct: 482 QRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFFHETIGEIPISRLLVDMYQ 541
Query: 279 MEK 281
MEK
Sbjct: 542 MEK 544
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL QP+E+LQDQAQ IL DY R RY +QP R GRL++++ LR V T+ERLFF
Sbjct: 464 ETVGLHAVQPIEILQDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFF 523
Query: 344 KETIGDIPIQRLLGDMYTMEK 364
ETIG+IPI RLL DMY MEK
Sbjct: 524 HETIGEIPISRLLVDMYQMEK 544
>gi|225581113|gb|ACN94685.1| GA21482 [Drosophila miranda]
Length = 690
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/208 (70%), Positives = 165/208 (79%), Gaps = 3/208 (1%)
Query: 75 PPPHPGLL--QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELF 132
PPP P L L+S E QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELF
Sbjct: 476 PPPLPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELF 535
Query: 133 LLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCM 192
LL+LAQW+IP DL+ ++ +ER+ D+ E+K IQEIL RFRQ++PDGSE GCM
Sbjct: 536 LLNLAQWTIPLDLTPILESPLIKERVLQDEA-TQTEMKTIQEILCRFRQITPDGSEVGCM 594
Query: 193 KAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQ 252
KA+ LF PET GL D QPVEMLQDQAQCIL D+VR RYSRQ TRFGRLLL+LPSLR +R
Sbjct: 595 KAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRA 654
Query: 253 STIERLFFKETIGDIPIQRLLGDMYTME 280
STIE LFFKETIG++PI RLL DMYTME
Sbjct: 655 STIEALFFKETIGNVPIARLLRDMYTME 682
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/80 (80%), Positives = 69/80 (86%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RYSRQ TRFGRLLL+LPSLR +R STIE LFF
Sbjct: 603 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFF 662
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 663 KETIGNVPIARLLRDMYTME 682
>gi|198475944|ref|XP_001357213.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
gi|198137475|gb|EAL34282.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
Length = 691
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/208 (70%), Positives = 165/208 (79%), Gaps = 3/208 (1%)
Query: 75 PPPHPGLL--QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELF 132
PPP P L L+S E QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELF
Sbjct: 477 PPPLPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELF 536
Query: 133 LLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCM 192
LL+LAQW+IP DL+ ++ +ER+ D+ E+K IQEIL RFRQ++PDGSE GCM
Sbjct: 537 LLNLAQWTIPLDLTPILESPLIKERVLQDEA-TQTEMKTIQEILCRFRQITPDGSEVGCM 595
Query: 193 KAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQ 252
KA+ LF PET GL D QPVEMLQDQAQCIL D+VR RYSRQ TRFGRLLL+LPSLR +R
Sbjct: 596 KAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRA 655
Query: 253 STIERLFFKETIGDIPIQRLLGDMYTME 280
STIE LFFKETIG++PI RLL DMYTME
Sbjct: 656 STIEALFFKETIGNVPIARLLRDMYTME 683
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/80 (80%), Positives = 69/80 (86%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RYSRQ TRFGRLLL+LPSLR +R STIE LFF
Sbjct: 604 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFF 663
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 664 KETIGNVPIARLLRDMYTME 683
>gi|194856940|ref|XP_001968860.1| GG25103 [Drosophila erecta]
gi|190660727|gb|EDV57919.1| GG25103 [Drosophila erecta]
Length = 693
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 140/196 (71%), Positives = 159/196 (81%), Gaps = 1/196 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L+S E QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELFLL+LAQW+IP D
Sbjct: 493 LLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLD 552
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
L+ ++ RER+ D+ E+K IQEIL RFRQ++PDGSE GCMKA+ LF PET G
Sbjct: 553 LTPILESPLIRERVLQDEA-TQTEMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAG 611
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFFKETI
Sbjct: 612 LCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETI 671
Query: 265 GDIPIQRLLGDMYTME 280
G++PI RLL DMYTME
Sbjct: 672 GNVPIARLLRDMYTME 687
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 68/80 (85%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFF
Sbjct: 608 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 667
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 668 KETIGNVPIARLLRDMYTME 687
>gi|195146576|ref|XP_002014260.1| GL19043 [Drosophila persimilis]
gi|194106213|gb|EDW28256.1| GL19043 [Drosophila persimilis]
Length = 819
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/208 (70%), Positives = 165/208 (79%), Gaps = 3/208 (1%)
Query: 75 PPPHPGLL--QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELF 132
PPP P L L+S E QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELF
Sbjct: 605 PPPLPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELF 664
Query: 133 LLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCM 192
LL+LAQW+IP DL+ ++ +ER+ D+ E+K IQEIL RFRQ++PDGSE GCM
Sbjct: 665 LLNLAQWTIPLDLTPILESPLIKERVLQDEA-TQTEMKTIQEILCRFRQITPDGSEVGCM 723
Query: 193 KAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQ 252
KA+ LF PET GL D QPVEMLQDQAQCIL D+VR RYSRQ TRFGRLLL+LPSLR +R
Sbjct: 724 KAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRA 783
Query: 253 STIERLFFKETIGDIPIQRLLGDMYTME 280
STIE LFFKETIG++PI RLL DMYTME
Sbjct: 784 STIEALFFKETIGNVPIARLLRDMYTME 811
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/80 (80%), Positives = 69/80 (86%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RYSRQ TRFGRLLL+LPSLR +R STIE LFF
Sbjct: 732 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYSRQATRFGRLLLLLPSLRTIRASTIEALFF 791
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 792 KETIGNVPIARLLRDMYTME 811
>gi|17137164|ref|NP_477140.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|442626233|ref|NP_001260109.1| dissatisfaction, isoform B [Drosophila melanogaster]
gi|7297033|gb|AAF52303.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|440213405|gb|AGB92645.1| dissatisfaction, isoform B [Drosophila melanogaster]
Length = 691
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 140/196 (71%), Positives = 159/196 (81%), Gaps = 1/196 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L+S E QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELFLL+LAQW+IP D
Sbjct: 491 LLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLD 550
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
L+ ++ RER+ D+ E+K IQEIL RFRQ++PDGSE GCMKA+ LF PET G
Sbjct: 551 LTPILESPLIRERVLQDEA-TQTEMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAG 609
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFFKETI
Sbjct: 610 LCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETI 669
Query: 265 GDIPIQRLLGDMYTME 280
G++PI RLL DMYTME
Sbjct: 670 GNVPIARLLRDMYTME 685
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 68/80 (85%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFF
Sbjct: 606 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 665
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 666 KETIGNVPIARLLRDMYTME 685
>gi|195434755|ref|XP_002065368.1| GK14705 [Drosophila willistoni]
gi|194161453|gb|EDW76354.1| GK14705 [Drosophila willistoni]
Length = 730
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 140/196 (71%), Positives = 159/196 (81%), Gaps = 1/196 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L+S E QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELFLL+LAQW+IP D
Sbjct: 530 LLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLD 589
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
L+ ++ +ER+ D+ E+K IQEIL RFRQ++PDGSE GCMKA+ LF PET G
Sbjct: 590 LTPILESPLIKERVLQDEA-TQTEMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAG 648
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R STIE LFFKETI
Sbjct: 649 LCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRASTIEALFFKETI 708
Query: 265 GDIPIQRLLGDMYTME 280
G++PI RLL DMYTME
Sbjct: 709 GNVPIARLLRDMYTME 724
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/80 (78%), Positives = 68/80 (85%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R STIE LFF
Sbjct: 645 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRASTIEALFF 704
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 705 KETIGNVPIARLLRDMYTME 724
>gi|4160012|gb|AAD05225.1| dissatisfaction [Drosophila melanogaster]
Length = 693
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 140/196 (71%), Positives = 159/196 (81%), Gaps = 1/196 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L+S E QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELFLL+LAQW+IP D
Sbjct: 493 LLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLD 552
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
L+ ++ RER+ D+ E+K IQEIL RFRQ++PDGSE GCMKA+ LF PET G
Sbjct: 553 LTPILESPLIRERVLQDEA-TQTEMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAG 611
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFFKETI
Sbjct: 612 LCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETI 671
Query: 265 GDIPIQRLLGDMYTME 280
G++PI RLL DMYTME
Sbjct: 672 GNVPIARLLRDMYTME 687
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 68/80 (85%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFF
Sbjct: 608 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 667
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 668 KETIGNVPIARLLRDMYTME 687
>gi|195473765|ref|XP_002089163.1| GE25723 [Drosophila yakuba]
gi|194175264|gb|EDW88875.1| GE25723 [Drosophila yakuba]
Length = 691
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 140/196 (71%), Positives = 159/196 (81%), Gaps = 1/196 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L+S E QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELFLL+LAQW+IP D
Sbjct: 491 LLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLD 550
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
L+ ++ RER+ D+ E+K IQEIL RFRQ++PDGSE GCMKA+ LF PET G
Sbjct: 551 LTPILESPLIRERVLQDEA-TQTEMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAG 609
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFFKETI
Sbjct: 610 LCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETI 669
Query: 265 GDIPIQRLLGDMYTME 280
G++PI RLL DMYTME
Sbjct: 670 GNVPIARLLRDMYTME 685
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 68/80 (85%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFF
Sbjct: 606 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 665
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 666 KETIGNVPIARLLRDMYTME 685
>gi|194760978|ref|XP_001962709.1| GF15588 [Drosophila ananassae]
gi|190616406|gb|EDV31930.1| GF15588 [Drosophila ananassae]
Length = 702
Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 140/196 (71%), Positives = 159/196 (81%), Gaps = 1/196 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L+S E QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELFLL+LAQW+IP D
Sbjct: 501 LLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLD 560
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
L+ ++ RER+ D+ E+K IQEIL RFRQ++PDGSE GCMKA+ LF PET G
Sbjct: 561 LTPILESPLIRERVLQDEA-TQTEMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAG 619
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFFKETI
Sbjct: 620 LCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETI 679
Query: 265 GDIPIQRLLGDMYTME 280
G++PI RLL DMYTME
Sbjct: 680 GNVPIARLLRDMYTME 695
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 68/80 (85%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFF
Sbjct: 616 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 675
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 676 KETIGNVPIARLLRDMYTME 695
>gi|195116317|ref|XP_002002702.1| GI17531 [Drosophila mojavensis]
gi|193913277|gb|EDW12144.1| GI17531 [Drosophila mojavensis]
Length = 736
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/208 (69%), Positives = 164/208 (78%), Gaps = 3/208 (1%)
Query: 75 PPPHPGLL--QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELF 132
PPP P L L+S E QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELF
Sbjct: 524 PPPLPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELF 583
Query: 133 LLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCM 192
LL+LAQW+IP DL+ ++ +ER+ D+ E+K IQEIL RFRQ++PDGSE GCM
Sbjct: 584 LLNLAQWTIPLDLTPILESPLIKERVLQDEA-TQMEMKTIQEILCRFRQITPDGSEVGCM 642
Query: 193 KAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQ 252
KA+ LF PET GL D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R
Sbjct: 643 KAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRA 702
Query: 253 STIERLFFKETIGDIPIQRLLGDMYTME 280
+TIE LFFKETIG++PI RLL DMYTME
Sbjct: 703 ATIEALFFKETIGNVPIARLLRDMYTME 730
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 68/80 (85%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFF
Sbjct: 651 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 710
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 711 KETIGNVPIARLLRDMYTME 730
>gi|158298421|ref|XP_318587.4| AGAP009575-PA [Anopheles gambiae str. PEST]
gi|157013872|gb|EAA14563.5| AGAP009575-PA [Anopheles gambiae str. PEST]
Length = 761
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 145/210 (69%), Positives = 167/210 (79%), Gaps = 2/210 (0%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
T PP P +++ L + E QETTARLLFM+VRWVRCL PFQTLSK DQ LLLQESWKEL
Sbjct: 527 TALPPEGPTIIR-LPTWEILQETTARLLFMSVRWVRCLIPFQTLSKNDQHLLLQESWKEL 585
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGC 191
FLL+ AQWS+PWDLS L++ + R+RLPPD E+K +QEIL RFRQ+SPD SE GC
Sbjct: 586 FLLNFAQWSVPWDLSGLLDSPQVRDRLPPDAA-TQLEMKTMQEILCRFRQISPDLSELGC 644
Query: 192 MKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVR 251
MKAVILF+PET L D QPVEMLQDQAQC+L ++VR RY RQPTRFGRLLL+LP LR +R
Sbjct: 645 MKAVILFSPETSELCDVQPVEMLQDQAQCVLSEHVRVRYPRQPTRFGRLLLLLPLLRTIR 704
Query: 252 QSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
+TIE LFFKETIG +PI RLL DMY MEK
Sbjct: 705 STTIETLFFKETIGTVPISRLLIDMYQMEK 734
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 66/81 (81%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET L D QPVEMLQDQAQC+L ++VR RY RQPTRFGRLLL+LP LR +R +TIE LFF
Sbjct: 654 ETSELCDVQPVEMLQDQAQCVLSEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFF 713
Query: 344 KETIGDIPIQRLLGDMYTMEK 364
KETIG +PI RLL DMY MEK
Sbjct: 714 KETIGTVPISRLLIDMYQMEK 734
>gi|195385346|ref|XP_002051367.1| GJ15408 [Drosophila virilis]
gi|194147824|gb|EDW63522.1| GJ15408 [Drosophila virilis]
Length = 726
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 139/196 (70%), Positives = 159/196 (81%), Gaps = 1/196 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L+S E QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELFLL+LAQW+IP D
Sbjct: 526 LLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLD 585
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
L+ ++ +ER+ D+ E+K IQEIL RFRQ++PDGSE GCMKA+ LF PET G
Sbjct: 586 LTPILESPLIKERVLQDEA-TQMEMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAG 644
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFFKETI
Sbjct: 645 LCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETI 704
Query: 265 GDIPIQRLLGDMYTME 280
G++PI RLL DMYTME
Sbjct: 705 GNVPIARLLRDMYTME 720
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 68/80 (85%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFF
Sbjct: 641 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 700
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 701 KETIGNVPIARLLRDMYTME 720
>gi|195030592|ref|XP_001988152.1| GH11011 [Drosophila grimshawi]
gi|193904152|gb|EDW03019.1| GH11011 [Drosophila grimshawi]
Length = 719
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/208 (69%), Positives = 164/208 (78%), Gaps = 3/208 (1%)
Query: 75 PPPHPGLL--QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELF 132
PPP P L L+S E QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELF
Sbjct: 507 PPPLPQQLLDSRLLSWEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELF 566
Query: 133 LLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCM 192
LL+LAQW+IP DL+ ++ +ER+ D+ E+K IQEIL RFRQ++PDGSE GCM
Sbjct: 567 LLNLAQWTIPLDLTPILESPLIKERVLQDEA-TQIEMKTIQEILCRFRQITPDGSEVGCM 625
Query: 193 KAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQ 252
KA+ LF PET GL D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R
Sbjct: 626 KAIALFAPETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRA 685
Query: 253 STIERLFFKETIGDIPIQRLLGDMYTME 280
+TIE LFFKETIG++PI RLL DMYTME
Sbjct: 686 ATIEALFFKETIGNVPIARLLRDMYTME 713
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 68/80 (85%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFF
Sbjct: 634 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 693
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 694 KETIGNVPIARLLRDMYTME 713
>gi|170031169|ref|XP_001843459.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167869235|gb|EDS32618.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 697
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/206 (70%), Positives = 161/206 (78%), Gaps = 3/206 (1%)
Query: 79 PGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQ 138
PGL L + E QETTARLLFM+VRWVRCL PFQTLSK DQ LLLQESWKELFLL+ AQ
Sbjct: 473 PGLR--LPTWEILQETTARLLFMSVRWVRCLIPFQTLSKNDQHLLLQESWKELFLLNFAQ 530
Query: 139 WSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
WS+PWDLS L+ R+RLP D E+K +QEIL RFRQ+SPD SE GCMKAVILF
Sbjct: 531 WSVPWDLSALLESPPVRDRLPQDPA-TQMEMKTMQEILCRFRQISPDLSELGCMKAVILF 589
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
+PET L D QPVEMLQDQAQC+L D+VR RY RQPTRFGRLLL+LP LR +R +TIE L
Sbjct: 590 SPETSELCDVQPVEMLQDQAQCVLSDHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETL 649
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYE 284
FFKETIG +PI RLL DMY MEK E
Sbjct: 650 FFKETIGTVPISRLLIDMYQMEKYTE 675
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/83 (73%), Positives = 67/83 (80%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S ET L D QPVEMLQDQAQC+L D+VR RY RQPTRFGRLLL+LP LR +R +TIE L
Sbjct: 590 SPETSELCDVQPVEMLQDQAQCVLSDHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETL 649
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FFKETIG +PI RLL DMY MEK
Sbjct: 650 FFKETIGTVPISRLLIDMYQMEK 672
>gi|312385998|gb|EFR30376.1| hypothetical protein AND_00091 [Anopheles darlingi]
Length = 787
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 138/193 (71%), Positives = 155/193 (80%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E QETTARLLFM+VRWVRCL PFQTLSK DQ LLLQESWKELFLL+ AQWS+PWDL L
Sbjct: 565 EILQETTARLLFMSVRWVRCLIPFQTLSKSDQHLLLQESWKELFLLNFAQWSVPWDLGGL 624
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ R+RLP D E+K +QEIL RFRQ+SPD SE GCMKAVILF+PET L D
Sbjct: 625 LDSPHVRDRLPQQDAASQLEMKTMQEILCRFRQISPDLSELGCMKAVILFSPETSELCDV 684
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
QPVEMLQDQAQC+L ++VR RY RQPTRFGRLLL+LP LR +R +TIE LFFKETIG +P
Sbjct: 685 QPVEMLQDQAQCVLAEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETIGTVP 744
Query: 269 IQRLLGDMYTMEK 281
I RLL DMY MEK
Sbjct: 745 ISRLLIDMYQMEK 757
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 66/81 (81%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET L D QPVEMLQDQAQC+L ++VR RY RQPTRFGRLLL+LP LR +R +TIE LFF
Sbjct: 677 ETSELCDVQPVEMLQDQAQCVLAEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFF 736
Query: 344 KETIGDIPIQRLLGDMYTMEK 364
KETIG +PI RLL DMY MEK
Sbjct: 737 KETIGTVPISRLLIDMYQMEK 757
>gi|157109777|ref|XP_001650818.1| Dissatisfaction (Dsf) [Aedes aegypti]
gi|108878920|gb|EAT43145.1| AAEL005381-PA, partial [Aedes aegypti]
Length = 723
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/209 (68%), Positives = 161/209 (77%), Gaps = 5/209 (2%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E QETTARLLFM+VRWVRCL PFQTLSK DQ LLLQESWKELFLL+ AQWS+PWDLS L
Sbjct: 512 EILQETTARLLFMSVRWVRCLIPFQTLSKNDQHLLLQESWKELFLLNFAQWSVPWDLSAL 571
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+ + R+R+P D E+K +QEIL RFRQ+SPD SE GCMKAVILF+PET L D
Sbjct: 572 LESPQVRDRIPHDPA-TQMEMKTMQEILCRFRQISPDLSELGCMKAVILFSPETSELCDV 630
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
QPVEMLQDQAQC+L D+VR RY RQPTRFGRLLL+LP LR +R TIE LFFKETIG +P
Sbjct: 631 QPVEMLQDQAQCVLSDHVRVRYPRQPTRFGRLLLLLPLLRTIRSVTIETLFFKETIGTVP 690
Query: 269 IQRLLGDMYTMEKSYE----TPGLVDAQP 293
I RLL DMY MEK + TPG+ P
Sbjct: 691 ISRLLIDMYQMEKYTDLETGTPGVSIGTP 719
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 65/81 (80%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET L D QPVEMLQDQAQC+L D+VR RY RQPTRFGRLLL+LP LR +R TIE LFF
Sbjct: 623 ETSELCDVQPVEMLQDQAQCVLSDHVRVRYPRQPTRFGRLLLLLPLLRTIRSVTIETLFF 682
Query: 344 KETIGDIPIQRLLGDMYTMEK 364
KETIG +PI RLL DMY MEK
Sbjct: 683 KETIGTVPISRLLIDMYQMEK 703
>gi|195342848|ref|XP_002038010.1| GM18580 [Drosophila sechellia]
gi|194132860|gb|EDW54428.1| GM18580 [Drosophila sechellia]
Length = 196
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 137/189 (72%), Positives = 155/189 (82%), Gaps = 1/189 (0%)
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC 151
QETTARLLFMAVRWV+CL PFQTLSK DQ LLLQESWKELFLL+LAQW+IP DL+ ++
Sbjct: 3 QETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPILES 62
Query: 152 EKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
RER+ D+ E+K IQEIL RFRQ++PDGSE GCMKA+ LF PET GL D QPV
Sbjct: 63 PLIRERVLQDEA-TQTEMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPV 121
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
EMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFFKETIG++PI R
Sbjct: 122 EMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFFKETIGNVPIAR 181
Query: 272 LLGDMYTME 280
LL DMYTME
Sbjct: 182 LLRDMYTME 190
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 68/80 (85%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D QPVEMLQDQAQCIL D+VR RY RQ TRFGRLLL+LPSLR +R +TIE LFF
Sbjct: 111 ETAGLCDVQPVEMLQDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLRTIRAATIEALFF 170
Query: 344 KETIGDIPIQRLLGDMYTME 363
KETIG++PI RLL DMYTME
Sbjct: 171 KETIGNVPIARLLRDMYTME 190
>gi|383859045|ref|XP_003705008.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 442
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 162/343 (47%), Positives = 189/343 (55%), Gaps = 68/343 (19%)
Query: 1 VQHERGPRKPKIHNAH-------HQDS---------KLEPHNPHHSPDLLPP--NGISSV 42
VQHERGPRKPK H H D L PH P ++ V
Sbjct: 101 VQHERGPRKPKQHQQQSPITTPIHNDRLRTGIGSPYVLSPHRRFRCDQRFTPYPRPVALV 160
Query: 43 KIPPTVLYPPSGLKSPPPPSHHHPSMFLATHQPP-----PHPGLLQILMSAEKCQE---- 93
+ PP P+ L P H PS PP P P LLQILMSAEKCQE
Sbjct: 161 QKPPEDSPSPAPLALP-----HSPSTTTLYSAPPTVTLAPQPPLLQILMSAEKCQELVWN 215
Query: 94 ------------------------------------TTARLLFMAVRWVRCLAPFQTLSK 117
TTARLLFM VRWV CL FQ+LSK
Sbjct: 216 ARLQPETEYSLEQTETSHNSTATSQNPNPTREILQETTARLLFMTVRWVCCLPLFQSLSK 275
Query: 118 RDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILA 177
DQLLLL+ SW +LFLLHLAQWSI WD++ L+ E+ R R D+V +N E+ +IQ I+
Sbjct: 276 NDQLLLLEGSWTQLFLLHLAQWSISWDITGLLEDEQIRGRFSKDEVGINQELIIIQAIVC 335
Query: 178 RFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRF 237
RFRQLSPD ECGCMKAV LFTPET GL + V+MLQDQAQCILGDY RY RQP R
Sbjct: 336 RFRQLSPDVGECGCMKAVALFTPETEGLHATESVKMLQDQAQCILGDYTTSRYLRQPGRS 395
Query: 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
G L+ ++ L++V T+ERLFF ET+G+IPI RLL +MY ME
Sbjct: 396 GTLMYLVGYLKSVSSKTVERLFFHETVGEIPISRLLVNMYQME 438
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 85/144 (59%), Gaps = 19/144 (13%)
Query: 224 DYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK-- 281
+ +RGR+S+ + L+++ Q+ + R F++ D+ G+ M+
Sbjct: 310 EQIRGRFSKDEVGINQELIII-------QAIVCR--FRQLSPDV------GECGCMKAVA 354
Query: 282 --SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIE 339
+ ET GL + V+MLQDQAQCILGDY RY RQP R G L+ ++ L++V T+E
Sbjct: 355 LFTPETEGLHATESVKMLQDQAQCILGDYTTSRYLRQPGRSGTLMYLVGYLKSVSSKTVE 414
Query: 340 RLFFKETIGDIPIQRLLGDMYTME 363
RLFF ET+G+IPI RLL +MY ME
Sbjct: 415 RLFFHETVGEIPISRLLVNMYQME 438
>gi|322787044|gb|EFZ13268.1| hypothetical protein SINV_11756 [Solenopsis invicta]
Length = 288
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 142/247 (57%), Positives = 161/247 (65%), Gaps = 42/247 (17%)
Query: 77 PHPGLLQILMSAEKCQE------------------------------------------T 94
P P LLQILMSAE+CQE T
Sbjct: 39 PQPPLLQILMSAEECQELVWNARLQPAAEYPMEQIETETSRSPTGTVQSFSPTWEMLQET 98
Query: 95 TARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKA 154
TARLLFMAVRWVRCL PFQT+SK DQLLLL+ SW +LFLLHLAQWSI WD++ L+ E+
Sbjct: 99 TARLLFMAVRWVRCLPPFQTISKDDQLLLLERSWTQLFLLHLAQWSISWDITALLEDEQV 158
Query: 155 RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEML 214
R RLP DD N E+ LIQ I+ RFRQLSPD ECGCMKAV LFTPET GL QP+E+L
Sbjct: 159 RSRLPTDDNPTNQELVLIQAIICRFRQLSPDFGECGCMKAVALFTPETVGLHAIQPIEIL 218
Query: 215 QDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLG 274
QDQAQ IL DY R RY +QP R GRL++++ LR V T+ERLFF ETIG+IPI RLL
Sbjct: 219 QDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFFHETIGEIPISRLLV 278
Query: 275 DMYTMEK 281
DMY MEK
Sbjct: 279 DMYQMEK 285
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL QP+E+LQDQAQ IL DY R RY +QP R GRL++++ LR V T+ERLFF
Sbjct: 205 ETVGLHAIQPIEILQDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFF 264
Query: 344 KETIGDIPIQRLLGDMYTMEK 364
ETIG+IPI RLL DMY MEK
Sbjct: 265 HETIGEIPISRLLVDMYQMEK 285
>gi|307170858|gb|EFN62969.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 195
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/190 (68%), Positives = 149/190 (78%)
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC 151
QETTARLLFMAVRWVRCL PFQT+SK DQLLLL+ SW +LFLLHLAQWSI WD++ L++
Sbjct: 3 QETTARLLFMAVRWVRCLPPFQTISKDDQLLLLERSWTQLFLLHLAQWSISWDITALLDD 62
Query: 152 EKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
E+ R RLP DD N E+ LIQ I+ RFRQLSPD ECGCMKAV LFTPET GL QP+
Sbjct: 63 EQVRSRLPTDDNLTNQELVLIQAIICRFRQLSPDFGECGCMKAVALFTPETVGLHAIQPI 122
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
E+LQDQAQ IL DY R RY +QP R GRL++++ LR V T+ERLFF ETIG+IPI R
Sbjct: 123 EILQDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFFHETIGEIPISR 182
Query: 272 LLGDMYTMEK 281
LL DMY MEK
Sbjct: 183 LLVDMYQMEK 192
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 60/81 (74%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL QP+E+LQDQAQ IL DY R RY +QP R GRL++++ LR V T+ERLFF
Sbjct: 112 ETVGLHAIQPIEILQDQAQRILVDYTRSRYPQQPGRIGRLMILVGYLRCVSSKTVERLFF 171
Query: 344 KETIGDIPIQRLLGDMYTMEK 364
ETIG+IPI RLL DMY MEK
Sbjct: 172 HETIGEIPISRLLVDMYQMEK 192
>gi|357622948|gb|EHJ74290.1| putative Orphan nuclear receptor NR6A1 [Danaus plexippus]
Length = 307
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/244 (57%), Positives = 172/244 (70%), Gaps = 38/244 (15%)
Query: 76 PPHPGLLQILMSAEKCQE-------------------------------------TTARL 98
PP PGLL +LMS++KCQE T+ARL
Sbjct: 50 PPPPGLLHMLMSSDKCQELIWSAKQLQLQGDPSLLRPPPNAFGAPLAPTWELLQETSARL 109
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LFMAVRWVRCLAPFQ L+ DQ +LL+ +WK+LF+LHLAQWS PWDL+ L+ AR RL
Sbjct: 110 LFMAVRWVRCLAPFQALAASDQAVLLRAAWKDLFVLHLAQWSAPWDLAPLLAAPAARARL 169
Query: 159 PPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQA 218
P D + V+ EI +QEIL RFRQ++PDGSECGCMKA++LF+P+TPGL + QPVEMLQDQA
Sbjct: 170 PSDPL-VDLEINTLQEILCRFRQIAPDGSECGCMKAIVLFSPDTPGLSETQPVEMLQDQA 228
Query: 219 QCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 278
QCIL DYVR RY+RQPTRFGRLLL+LPSLRAVR +IE L F+ET+GD+ + LL DMY
Sbjct: 229 QCILADYVRTRYTRQPTRFGRLLLLLPSLRAVRARSIESLLFRETVGDVSVATLLHDMYR 288
Query: 279 MEKS 282
M+ +
Sbjct: 289 MQPA 292
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 69/84 (82%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S +TPGL + QPVEMLQDQAQCIL DYVR RY+RQPTRFGRLLL+LPSLRAVR +IE L
Sbjct: 209 SPDTPGLSETQPVEMLQDQAQCILADYVRTRYTRQPTRFGRLLLLLPSLRAVRARSIESL 268
Query: 342 FFKETIGDIPIQRLLGDMYTMEKS 365
F+ET+GD+ + LL DMY M+ +
Sbjct: 269 LFRETVGDVSVATLLHDMYRMQPA 292
>gi|340712645|ref|XP_003394866.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 425
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 157/338 (46%), Positives = 188/338 (55%), Gaps = 59/338 (17%)
Query: 1 VQHERGPRKPK-----------IHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPT-V 48
VQHERGPRKPK +HN + P+ H S P V
Sbjct: 85 VQHERGPRKPKQPQQQSPIAPPLHNDRLRTGLGSPYVLLHQRKFRCDQRFSPYPRPVALV 144
Query: 49 LYPPSGLKSPPPPSH-HHPSMFLATHQPP-----PHPGLLQILMSAEKCQE--------- 93
PP SP P + H PS PP P P LLQILMSAE+CQE
Sbjct: 145 QKPPEDSSSPAPLALPHSPSTTTLYSAPPSVALTPQPPLLQILMSAEQCQELVWNAPLQS 204
Query: 94 -------------------------------TTARLLFMAVRWVRCLAPFQTLSKRDQLL 122
TTARLLFMAVRWV CL FQ+LSK DQLL
Sbjct: 205 ETEYSLEQTEASHNSTGTLINPNPTRELLQETTARLLFMAVRWVCCLPLFQSLSKNDQLL 264
Query: 123 LLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQL 182
LL+ SW +LFLLHLAQWSI W+++ L+ E+ R RLP D+ N ++ IQ+ + RFRQL
Sbjct: 265 LLEGSWTQLFLLHLAQWSISWNITGLLEDEQVRARLP-DEATTNQQLITIQDTICRFRQL 323
Query: 183 SPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLL 242
SPD SE GCMKAV LFTPET GL ++ ++MLQDQAQCILGDY + RY RQP R G L+
Sbjct: 324 SPDMSEWGCMKAVALFTPETEGLHASESIKMLQDQAQCILGDYTKSRYQRQPGRSGTLMH 383
Query: 243 MLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
++ L ++ +ERLFF ETIG+IPI RLL DMY M+
Sbjct: 384 VVGRLTSIFPKLVERLFFHETIGEIPISRLLVDMYQMK 421
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 58/80 (72%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL ++ ++MLQDQAQCILGDY + RY RQP R G L+ ++ L ++ +ERLFF
Sbjct: 342 ETEGLHASESIKMLQDQAQCILGDYTKSRYQRQPGRSGTLMHVVGRLTSIFPKLVERLFF 401
Query: 344 KETIGDIPIQRLLGDMYTME 363
ETIG+IPI RLL DMY M+
Sbjct: 402 HETIGEIPISRLLVDMYQMK 421
>gi|321470051|gb|EFX81029.1| dissatisfaction-like protein [Daphnia pulex]
Length = 394
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 141/294 (47%), Positives = 183/294 (62%), Gaps = 28/294 (9%)
Query: 1 VQHERGPRKPKIHNAHHQDSKL--EPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSP 58
VQHERGPRKP++ +DS + E + HH G +P + +
Sbjct: 92 VQHERGPRKPRL-----KDSLMAAERSSVHHHFGGGGGGGGGGGGVPISAAGCLGNHNNN 146
Query: 59 PPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKR 118
H + ++ S+ ET+ARLLFMAVRWVR L PFQTLS+
Sbjct: 147 NSTQQHLTTSSSSSGLVTS------TTSSSTSSAETSARLLFMAVRWVRWLTPFQTLSRA 200
Query: 119 DQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARER--------------LPPDDVR 164
DQ LLLQESWKELFLL+LAQWS PWDL ++ ++ R + DD+
Sbjct: 201 DQQLLLQESWKELFLLYLAQWSSPWDLGAILT-QRLMNRQQQQQQQQHGGMRMMQADDLL 259
Query: 165 VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGD 224
+ EIK IQE+++R+RQLSPDGSECGC+KA+ +F PET GL + +PVE++QDQAQCIL D
Sbjct: 260 LATEIKTIQELMSRYRQLSPDGSECGCLKAIAVFKPETGGLSEVRPVELMQDQAQCILAD 319
Query: 225 YVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 278
YVR RY RQ TRFGRLLL+LP LR VR ST+E LFFK+T+G++ I R+L D+Y+
Sbjct: 320 YVRHRYPRQLTRFGRLLLLLPCLRLVRSSTVELLFFKDTLGEVAINRVLDDIYS 373
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 64/78 (82%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL + +PVE++QDQAQCIL DYVR RY RQ TRFGRLLL+LP LR VR ST+E LFF
Sbjct: 296 ETGGLSEVRPVELMQDQAQCILADYVRHRYPRQLTRFGRLLLLLPCLRLVRSSTVELLFF 355
Query: 344 KETIGDIPIQRLLGDMYT 361
K+T+G++ I R+L D+Y+
Sbjct: 356 KDTLGEVAINRVLDDIYS 373
>gi|391329670|ref|XP_003739292.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Metaseiulus occidentalis]
Length = 201
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/189 (57%), Positives = 141/189 (74%), Gaps = 6/189 (3%)
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC 151
QE TARLLFM +RWV+CL FQTLS+ DQ+ LL+ESW++LFLL+++ WS DL +
Sbjct: 16 QEITARLLFMVIRWVKCLPTFQTLSRGDQVCLLEESWRDLFLLYMSHWSPGVDLISSLPA 75
Query: 152 EKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
+ L P EI +Q+++ R RQLSPD +EC C+KA++LF PET GL D PV
Sbjct: 76 AVHHDELNP------IEIHYVQDVMRRLRQLSPDDTECSCLKAIVLFKPETMGLCDTHPV 129
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
EMLQD+AQC+LGDYVR RY RQPTRFGRLLL+LP LR++ IE+LFFK TIG+I +++
Sbjct: 130 EMLQDRAQCVLGDYVRERYPRQPTRFGRLLLLLPILRSISNVFIEKLFFKGTIGNIRVEK 189
Query: 272 LLGDMYTME 280
+LG+MYTM+
Sbjct: 190 ILGEMYTMQ 198
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 67/80 (83%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D PVEMLQD+AQC+LGDYVR RY RQPTRFGRLLL+LP LR++ IE+LFF
Sbjct: 119 ETMGLCDTHPVEMLQDRAQCVLGDYVRERYPRQPTRFGRLLLLLPILRSISNVFIEKLFF 178
Query: 344 KETIGDIPIQRLLGDMYTME 363
K TIG+I ++++LG+MYTM+
Sbjct: 179 KGTIGNIRVEKILGEMYTMQ 198
>gi|241651520|ref|XP_002411276.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215503906|gb|EEC13400.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 370
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/203 (56%), Positives = 141/203 (69%), Gaps = 26/203 (12%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDL--SL 147
QE TARLLFM +RWV LL+ESWK+LFLL++AQWS+ DL SL
Sbjct: 181 SVQEVTARLLFMVIRWVT---------------LLEESWKDLFLLYMAQWSVAADLVSSL 225
Query: 148 --LINCEKARERLPPDDVRV-------NNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
L A RL PD + E+ IQ+++ R RQLSPD +EC C+KAV+LF
Sbjct: 226 PGLKGGAGAALRLHPDALAALEGSPHQGAELHYIQDVMRRLRQLSPDDTECSCLKAVVLF 285
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
PET GL D PVEMLQDQAQC+LGDY+R ++ RQPTRFGRLLL+LPSLRA+ +T+ERL
Sbjct: 286 KPETIGLCDVHPVEMLQDQAQCVLGDYIRHKHPRQPTRFGRLLLLLPSLRAISAATVERL 345
Query: 259 FFKETIGDIPIQRLLGDMYTMEK 281
FFK+TIG+IPI+R+LGDMY MEK
Sbjct: 346 FFKDTIGNIPIERILGDMYNMEK 368
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 72/81 (88%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D PVEMLQDQAQC+LGDY+R ++ RQPTRFGRLLL+LPSLRA+ +T+ERLFF
Sbjct: 288 ETIGLCDVHPVEMLQDQAQCVLGDYIRHKHPRQPTRFGRLLLLLPSLRAISAATVERLFF 347
Query: 344 KETIGDIPIQRLLGDMYTMEK 364
K+TIG+IPI+R+LGDMY MEK
Sbjct: 348 KDTIGNIPIERILGDMYNMEK 368
>gi|391328748|ref|XP_003738846.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Metaseiulus occidentalis]
Length = 524
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/206 (53%), Positives = 142/206 (68%), Gaps = 17/206 (8%)
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDL------ 145
QE TARLLFM +RWV+CL FQTLS+ DQ+ LL+E WK+LFLL+++ WS DL
Sbjct: 316 QEITARLLFMVIRWVKCLPTFQTLSRGDQVCLLEEPWKDLFLLYMSHWSPGVDLISSLPA 375
Query: 146 -------SLLINCEKARERLPPDDVRVNN----EIKLIQEILARFRQLSPDGSECGCMKA 194
R+ + P V + EI +Q+++ R RQLSPD +EC C+KA
Sbjct: 376 KSSRPSSPKSPTGSPERDAVSPAAVHHDELNPIEIHYVQDVMRRLRQLSPDDTECSCLKA 435
Query: 195 VILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQST 254
++LF PET GL D PVEMLQDQAQC+LGDYVR RY RQPTRFGRLLL+LP LR++
Sbjct: 436 IVLFRPETMGLCDTHPVEMLQDQAQCVLGDYVRERYPRQPTRFGRLLLLLPILRSISNVF 495
Query: 255 IERLFFKETIGDIPIQRLLGDMYTME 280
IE+LFFK TIG+I ++++LG+MYTM+
Sbjct: 496 IEKLFFKGTIGNIRVEKILGEMYTMQ 521
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 67/80 (83%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D PVEMLQDQAQC+LGDYVR RY RQPTRFGRLLL+LP LR++ IE+LFF
Sbjct: 442 ETMGLCDTHPVEMLQDQAQCVLGDYVRERYPRQPTRFGRLLLLLPILRSISNVFIEKLFF 501
Query: 344 KETIGDIPIQRLLGDMYTME 363
K TIG+I ++++LG+MYTM+
Sbjct: 502 KGTIGNIRVEKILGEMYTMQ 521
>gi|291232327|ref|XP_002736110.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 407
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 168/294 (57%), Gaps = 29/294 (9%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPP 60
VQHERGPRK K +K+ + S L ++PPT+ Y S
Sbjct: 123 VQHERGPRKTK--------AKINEGDTSFSVSALQLRTTEYSRVPPTMDYVTSAASYYGT 174
Query: 61 PSHHHPSMFLATHQPPPHPGLLQI---------------LMSAEKCQETTARLLFMAVRW 105
H L Q +P L + ++ E E ARLLF+ V+W
Sbjct: 175 FYHS----LLTAEQYNLNPLALDLNSRVKMEFGESSVDMKITPECLPEIAARLLFITVKW 230
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK-ARERLPPDDV- 163
V+ + +Q L RDQL+LL+E W++LF+L L+QWS+P D +++ K + E P + +
Sbjct: 231 VKHMPSYQILPYRDQLILLEEGWRDLFMLGLSQWSVPMDEKSILSLAKLSSENTPQEKLS 290
Query: 164 RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILG 223
++ E++ +Q+ + R +++ D +E C+KA+ +F ET GL DA VE LQDQAQ +LG
Sbjct: 291 QIMTEVRHMQDNVRRLQKMGLDATEYACLKAISIFKSETHGLRDAHQVETLQDQAQVMLG 350
Query: 224 DYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
DY+R +Y+RQP RFG+ LLMLPSLR++ T+E LFF++TIG IPI+RLL DM+
Sbjct: 351 DYLRHQYARQPVRFGKCLLMLPSLRSISSRTLEMLFFRDTIGSIPIERLLCDMF 404
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL DA VE LQDQAQ +LGDY+R +Y+RQP RFG+ LLMLPSLR++ T+E LFF
Sbjct: 328 ETHGLRDAHQVETLQDQAQVMLGDYLRHQYARQPVRFGKCLLMLPSLRSISSRTLEMLFF 387
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG IPI+RLL DM+
Sbjct: 388 RDTIGSIPIERLLCDMF 404
>gi|259013303|ref|NP_001158447.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
gi|196475499|gb|ACG76360.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
Length = 439
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 135/191 (70%), Gaps = 3/191 (1%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS-L 147
E E++ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P + S L
Sbjct: 248 ENIYESSARLLFMAVKWAKNLPSFSALPFRDQVILLEEAWSELFLLCAIQWSMPLESSPL 307
Query: 148 LINCEKARE-RLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
L+ E+++ +L + ++I+++QEI+ARF+ ++ D +E CMKA++LF P+T GL
Sbjct: 308 LVAPEQSQATQLNGKTAAMLSDIRVLQEIMARFKAMNVDPAEFACMKAIVLFKPDTRGLK 367
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D Q VE LQDQAQ +LG + R + QPTRFGRLLLMLPSLR V + IE LFF TIG+
Sbjct: 368 DPQQVENLQDQAQLMLGQHTRN-HPTQPTRFGRLLLMLPSLRFVTPNRIENLFFHHTIGN 426
Query: 267 IPIQRLLGDMY 277
P++RLL DM+
Sbjct: 427 TPMERLLCDMF 437
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+T GL D Q VE LQDQAQ +LG + R + QPTRFGRLLLMLPSLR V + IE LFF
Sbjct: 362 DTRGLKDPQQVENLQDQAQLMLGQHTRN-HPTQPTRFGRLLLMLPSLRFVTPNRIENLFF 420
Query: 344 KETIGDIPIQRLLGDMY 360
TIG+ P++RLL DM+
Sbjct: 421 HHTIGNTPMERLLCDMF 437
>gi|390331720|ref|XP_780706.3| PREDICTED: photoreceptor-specific nuclear receptor-like
[Strongylocentrotus purpuratus]
Length = 443
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/262 (41%), Positives = 152/262 (58%), Gaps = 18/262 (6%)
Query: 20 SKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPPPSHHH---PSMFLATHQPP 76
+KLEP + H + G + P L+S HHH P M L+ +
Sbjct: 194 AKLEPEDALHDTCEIDVTGDTD---------PRVDLRS----DHHHQRRPGMILSGSELA 240
Query: 77 PHPGLLQIL-MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLH 135
P + + S + E++ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL
Sbjct: 241 STPKEIAVYPSSNDSIYESSARLLFMAVKWAKTLPSFSGLPFRDQVILLEEAWSELFLLC 300
Query: 136 LAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAV 195
QWS+P D L+ + + V++ I+L+QEI++RFR L D +E C+KA+
Sbjct: 301 ALQWSMPLDSCPLLTGLHEQSQTDKAATCVSD-IRLLQEIMSRFRGLRVDPAEFACLKAI 359
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
+LF PET GL D Q VE+LQDQA +L ++R Q RFGR+LL+LPSLR V +
Sbjct: 360 VLFKPETRGLKDPQQVEILQDQAHMMLTQHIRAHQPAQTARFGRMLLLLPSLRFVTSDQV 419
Query: 256 ERLFFKETIGDIPIQRLLGDMY 277
ERLFF+ TIGD P++RLL DM+
Sbjct: 420 ERLFFRCTIGDTPMERLLCDMF 441
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 54/77 (70%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D Q VE+LQDQA +L ++R Q RFGR+LL+LPSLR V +ERLFF
Sbjct: 365 ETRGLKDPQQVEILQDQAHMMLTQHIRAHQPAQTARFGRMLLLLPSLRFVTSDQVERLFF 424
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIGD P++RLL DM+
Sbjct: 425 RCTIGDTPMERLLCDMF 441
>gi|291232333|ref|XP_002736112.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 308
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 162/313 (51%), Gaps = 49/313 (15%)
Query: 1 VQHERGPRKPKIH----------NAHHQDSKLEPHNPHHSPDLL--------PPNGISSV 42
VQHERGPR I + P N H P + P GI+
Sbjct: 4 VQHERGPRNSTIRKQMALYLKETTGRDDVTATIPSNLRHGPTFMNTLLGGESPYMGITVS 63
Query: 43 KIPP----TVLYPPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARL 98
+ TV P+ + P P + P+ + E ET ARL
Sbjct: 64 TLDSLPSVTVTETPTPIICQPMPKY-------------PYELTPSYCSNPEAICETAARL 110
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS-LLINCEKARER 157
LFM+V+W + + F +L RDQLLLL+E W+ELF+L AQW + ++ LL + R
Sbjct: 111 LFMSVKWAKNVPAFLSLPFRDQLLLLEEGWRELFVLGAAQWQMCMEIGPLLAAAGQLHFR 170
Query: 158 L------PPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFT---PETP----G 204
L P V + +E++ QEI+A+F+Q+ D +E C+K +I+F P++P G
Sbjct: 171 LSTEHTNPEKIVAIMSEMRTFQEIIAKFKQMQVDATEYACLKGIIIFKSVFPDSPQEIRG 230
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ D V LQDQAQ L Y+ +Y QP RFG+LLLMLP LRA+R STIE LFF++TI
Sbjct: 231 VRDFHGVATLQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFFRKTI 290
Query: 265 GDIPIQRLLGDMY 277
G+IPI+RLL DMY
Sbjct: 291 GNIPIERLLCDMY 303
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 56/77 (72%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E G+ D V LQDQAQ L Y+ +Y QP RFG+LLLMLP LRA+R STIE LFF
Sbjct: 227 EIRGVRDFHGVATLQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFF 286
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+IPI+RLL DMY
Sbjct: 287 RKTIGNIPIERLLCDMY 303
>gi|149046956|gb|EDL99704.1| rCG58537 [Rattus norvegicus]
Length = 385
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +D+ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEDNGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELTAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNSDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|22726205|ref|NP_689415.1| nuclear receptor subfamily 2 group E member 1 [Mus musculus]
gi|6094489|sp|Q64104.1|NR2E1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=mTll
gi|2143507|pir||I53158 orphan nuclear receptor homolog - mouse
gi|998678|gb|AAB34090.1| orphan nuclear receptor homolog [Mus sp.]
gi|21668101|gb|AAM74229.1| nuclear receptor 2E1 [Mus musculus]
gi|34849469|gb|AAH57104.1| Nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
gi|74205430|dbj|BAE21029.1| unnamed protein product [Mus musculus]
gi|148673056|gb|EDL05003.1| nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
Length = 385
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +D+ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEDNGAAAHFP--STALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNTDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|348560562|ref|XP_003466082.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cavia porcellus]
Length = 385
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +D+ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEDNGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|163954969|ref|NP_001106668.1| nuclear receptor subfamily 2, group E, member 1 [Rattus norvegicus]
gi|163658507|gb|ABY28383.1| tailless-like protein [Rattus norvegicus]
Length = 385
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 165/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +D+ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEDNGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELTAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNSDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K + F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCTVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|45384018|ref|NP_990501.1| nuclear receptor subfamily 2 group E member 1 [Gallus gallus]
gi|6094488|sp|Q91379.1|NR2E1_CHICK RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|619338|gb|AAB31467.1| nuclear receptor TLX [Gallus gallus]
gi|745066|prf||2015392A nuclear receptor Tlx
Length = 385
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 167/307 (54%), Gaps = 44/307 (14%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNP---------HHSPDLLPPNGISSVKI 44
VQHERGPR I H ++S PH P + L P+G+ +
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEESSGAPHFPATALPAPAFFTAVSQLEPHGLELAAV 147
Query: 45 PPT-VLYPPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAV 103
T GL P P +P H+ P L + + C E+ ARLLFM++
Sbjct: 148 AGTPERQALVGLAQPTP---KYP------HEVNGTPMYLYEVATESVC-ESAARLLFMSI 197
Query: 104 RWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV 163
+W + + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 198 KWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNT 253
Query: 164 ------RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQP 210
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A
Sbjct: 254 DSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAA 313
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
+ LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI
Sbjct: 314 IAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPIT 373
Query: 271 RLLGDMY 277
RLL DMY
Sbjct: 374 RLLSDMY 380
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|259013325|ref|NP_001158362.1| tailless [Saccoglossus kowalevskii]
gi|32307797|gb|AAP79295.1| tailless [Saccoglossus kowalevskii]
Length = 361
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 159/286 (55%), Gaps = 26/286 (9%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPP 60
VQHERGPR I K E +P N ++ PT + G +SP
Sbjct: 88 VQHERGPRNSTIRKQMALYLK-ETTGRDDVTATIPSN----LRHGPTFMNTLLGGESPYM 142
Query: 61 PSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQ 120
+P ++ P E ET ARLLFM+V+W + + F +L RDQ
Sbjct: 143 -GITYPYELTPSYCSNP-----------EAICETAARLLFMSVKWAKNVPAFLSLPFRDQ 190
Query: 121 LLLLQESWKELFLLHLAQWSIPWDLS-LLINCEKARERLPPDD-VRVNNEIKLIQEILAR 178
LLLL+E W+ELF+L AQW + ++ LL + E P+ V + +E++ QEI+A+
Sbjct: 191 LLLLEEGWRELFVLGAAQWQMCMEIGPLLAAAGLSTEHTNPEKIVAIMSEMRTFQEIIAK 250
Query: 179 FRQLSPDGSECGCMKAVILFT---PETP----GLVDAQPVEMLQDQAQCILGDYVRGRYS 231
F+Q+ D +E C+K +I+F P++P G+ D V LQDQAQ L Y+ +Y
Sbjct: 251 FKQMQVDATEYACLKGIIIFKSVFPDSPQEIRGVRDFHGVATLQDQAQLTLSKYIHTKYP 310
Query: 232 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
QP RFG+LLLMLP LRA+R STIE LFF++TIG+IPI+RLL DMY
Sbjct: 311 TQPFRFGKLLLMLPQLRAIRPSTIEELFFRKTIGNIPIERLLCDMY 356
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 56/77 (72%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E G+ D V LQDQAQ L Y+ +Y QP RFG+LLLMLP LRA+R STIE LFF
Sbjct: 280 EIRGVRDFHGVATLQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEELFF 339
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+IPI+RLL DMY
Sbjct: 340 RKTIGNIPIERLLCDMY 356
>gi|327261729|ref|XP_003215681.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Anolis carolinensis]
Length = 382
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 170/309 (55%), Gaps = 48/309 (15%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSV-KIPP------ 46
VQHERGPR I H +D+ PH P S L P ++V ++ P
Sbjct: 85 VQHERGPRTSTIRKQVALYFRGHKEDNGATPHFP--SAALPAPAFFTTVTQLEPHNLELA 142
Query: 47 TVLYPPS-----GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFM 101
V P GL P P +P H+ P L + + C E+ ARLLFM
Sbjct: 143 AVSTTPERQSLVGLAQPTP---KYP------HEVSGTPMYLYEVATESVC-ESAARLLFM 192
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+++W + + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D
Sbjct: 193 SIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGD 248
Query: 162 DV------RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDA 208
+ ++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A
Sbjct: 249 NTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNA 308
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+ LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++P
Sbjct: 309 AAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVP 368
Query: 269 IQRLLGDMY 277
I RLL DMY
Sbjct: 369 ITRLLSDMY 377
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 307 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 366
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 367 VPITRLLSDMY 377
>gi|301763932|ref|XP_002917384.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Ailuropoda melanoleuca]
Length = 380
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 166/305 (54%), Gaps = 45/305 (14%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL S P ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLXSTP-----ERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 194
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 195 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 250
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 251 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 310
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 311 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 370
Query: 273 LGDMY 277
L DMY
Sbjct: 371 LSDMY 375
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 305 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 364
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 365 VPITRLLSDMY 375
>gi|284005564|ref|NP_001164794.1| nuclear receptor subfamily 2 group E member 1 [Oryctolagus
cuniculus]
gi|217038306|gb|ACJ76603.1| nuclear receptor subfamily 2 group E member 1 (predicted)
[Oryctolagus cuniculus]
Length = 385
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVAATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
+V +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKVISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|297678833|ref|XP_002817264.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pongo
abelii]
Length = 385
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHNRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHNRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|431838686|gb|ELK00616.1| Nuclear receptor subfamily 2 group E member 1 [Pteropus alecto]
Length = 408
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 111 VQHERGPRTSTIRKQVALYFRGHKEENGTAAHFP--SAALPAPAFFTAV-----TQLEPH 163
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 164 GLELATVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 222
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 223 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 278
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 279 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 338
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 339 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 398
Query: 273 LGDMY 277
L DMY
Sbjct: 399 LSDMY 403
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 333 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 392
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 393 VPITRLLSDMY 403
>gi|296198939|ref|XP_002746955.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Callithrix jacchus]
Length = 386
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 166/306 (54%), Gaps = 41/306 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP--------GLVDAQPV 211
++ +EI+ +QE++ARFRQL D +E C+K ++ F P +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFQAVIPTHSGSELRSFRNAAAI 315
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI R
Sbjct: 316 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITR 375
Query: 272 LLGDMY 277
LL DMY
Sbjct: 376 LLSDMY 381
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 311 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 370
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 371 VPITRLLSDMY 381
>gi|169409578|gb|ACA57920.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callicebus moloch]
Length = 385
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLSKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|4507537|ref|NP_003260.1| nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|281183082|ref|NP_001162457.1| nuclear receptor subfamily 2 group E member 1 [Papio anubis]
gi|388490051|ref|NP_001252896.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|114608752|ref|XP_527467.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
troglodytes]
gi|332259804|ref|XP_003278973.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Nomascus
leucogenys]
gi|344264555|ref|XP_003404357.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Loxodonta
africana]
gi|403289711|ref|XP_003935987.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Saimiri
boliviensis boliviensis]
gi|426354159|ref|XP_004044535.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Gorilla
gorilla gorilla]
gi|426354161|ref|XP_004044536.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Gorilla gorilla gorilla]
gi|9910804|sp|Q9Y466.1|NR2E1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=hTll
gi|11141399|gb|AAG31945.1|AF220532_1 orphan nuclear receptor [Homo sapiens]
gi|15705907|gb|AAL05871.1|AF411525_1 nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|2292902|emb|CAA73725.1| Tailless protein [Homo sapiens]
gi|20380429|gb|AAH28031.1| Nuclear receptor subfamily 2, group E, member 1 [Homo sapiens]
gi|61358419|gb|AAX41565.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
gi|119568770|gb|EAW48385.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_a
[Homo sapiens]
gi|164449656|gb|ABY56294.1| nuclear receptor subfamily 2, group E, member 1 (predicted) [Papio
anubis]
gi|166183798|gb|ABY84160.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callithrix jacchus]
gi|216409726|dbj|BAH02300.1| tailes-related receptor [Homo sapiens]
gi|261857884|dbj|BAI45464.1| nuclear receptor subfamily 2, group E, member 1 [synthetic
construct]
gi|325495503|gb|ADZ17357.1| nuclear receptor TLX [Homo sapiens]
gi|355562170|gb|EHH18802.1| hypothetical protein EGK_15469 [Macaca mulatta]
gi|380816050|gb|AFE79899.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|380816052|gb|AFE79900.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
Length = 385
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|354469258|ref|XP_003497047.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cricetulus griseus]
Length = 518
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +D+ H P S L P ++V P
Sbjct: 221 VQHERGPRTSTIRKQVALYFRGHKEDNGAAAHFP--SAALPAPAFFTAV-----TQLEPH 273
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 274 GLELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 332
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 333 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNSDNTDS 388
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 389 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 448
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 449 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 508
Query: 273 LGDMY 277
L DMY
Sbjct: 509 LSDMY 513
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 443 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 502
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 503 VPITRLLSDMY 513
>gi|73973687|ref|XP_532253.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform 1
[Canis lupus familiaris]
gi|194216311|ref|XP_001502073.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Equus
caballus]
gi|335279315|ref|XP_003353327.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Sus
scrofa]
gi|190402236|gb|ACE77650.1| nuclear receptor subfamily 2, group E, member 1 homolog (predicted)
[Sorex araneus]
Length = 385
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|60828539|gb|AAX36846.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
Length = 386
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|300798463|ref|NP_001179582.1| nuclear receptor subfamily 2 group E member 1 [Bos taurus]
gi|426234591|ref|XP_004011277.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Ovis
aries]
gi|296484166|tpg|DAA26281.1| TPA: nuclear receptor subfamily 2, group E, member 1 [Bos taurus]
Length = 385
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLDPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|226526921|gb|ACO71279.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Dasypus novemcinctus]
Length = 385
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAATHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|183637194|gb|ACC64552.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Rhinolophus ferrumequinum]
Length = 385
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELATVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|395816268|ref|XP_003781627.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Otolemur
garnettii]
Length = 385
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 169/304 (55%), Gaps = 38/304 (12%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H ++++ + H P S L P ++V T L P S
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENRADAHFP--SAALPAPAFFTAV----TQLEPHS 141
Query: 54 ---GLKSPPPPSHHHPSMFLAT----HQPPPHPGLLQILMSAEKCQETTARLLFMAVRWV 106
S P S+ T H+ P L + + C E+ ARLLFM+++W
Sbjct: 142 LELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKWA 200
Query: 107 RCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV--- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 201 KSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDSQ 256
Query: 164 ---RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVEM 213
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 257 KLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAA 316
Query: 214 LQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLL 273
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RLL
Sbjct: 317 LQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLL 376
Query: 274 GDMY 277
DMY
Sbjct: 377 SDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|410959792|ref|XP_003986483.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Felis
catus]
Length = 422
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 125 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLEPH 177
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 178 GLELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 236
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 237 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 292
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 293 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 352
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 353 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 412
Query: 273 LGDMY 277
L DMY
Sbjct: 413 LSDMY 417
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 347 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 406
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 407 VPITRLLSDMY 417
>gi|440904093|gb|ELR54654.1| Nuclear receptor subfamily 2 group E member 1, partial [Bos
grunniens mutus]
Length = 396
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 99 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLDPH 151
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 152 GLELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 210
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 211 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 266
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 267 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 326
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 327 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 386
Query: 273 LGDMY 277
L DMY
Sbjct: 387 LSDMY 391
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 321 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 380
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 381 VPITRLLSDMY 391
>gi|397507811|ref|XP_003824377.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
paniscus]
Length = 385
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 168/305 (55%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V T L P S
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV----TQLEPHS 141
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
L+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 142 -LELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|197215627|gb|ACH53021.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Otolemur garnettii]
Length = 385
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 38/304 (12%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V T L P S
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV----TQLEPHS 141
Query: 54 ---GLKSPPPPSHHHPSMFLAT----HQPPPHPGLLQILMSAEKCQETTARLLFMAVRWV 106
S P S+ T H+ P L + + C E+ ARLLFM+++W
Sbjct: 142 LELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKWA 200
Query: 107 RCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV--- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 201 KSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDSQ 256
Query: 164 ---RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVEM 213
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 257 KLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAA 316
Query: 214 LQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLL 273
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RLL
Sbjct: 317 LQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLL 376
Query: 274 GDMY 277
DMY
Sbjct: 377 SDMY 380
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|47077588|dbj|BAD18677.1| unnamed protein product [Homo sapiens]
gi|119568771|gb|EAW48386.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_b
[Homo sapiens]
Length = 422
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 125 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLEPH 177
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 178 GLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 236
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 237 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 292
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 293 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 352
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 353 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 412
Query: 273 LGDMY 277
L DMY
Sbjct: 413 LSDMY 417
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 347 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 406
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 407 VPITRLLSDMY 417
>gi|351702072|gb|EHB04991.1| Nuclear receptor subfamily 2 group E member 1 [Heterocephalus
glaber]
Length = 445
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 168/305 (55%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +D+ H P S L P ++V T L P S
Sbjct: 148 VQHERGPRTSTIRKQVALYFRGHKEDNGAATHFP--SAALPAPAFFTAV----TQLEPHS 201
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
L+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 202 -LELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 259
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 260 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 315
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP-------GLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F P +A +
Sbjct: 316 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPPHSGSELRSFRNAAAIA 375
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 376 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 435
Query: 273 LGDMY 277
L DMY
Sbjct: 436 LSDMY 440
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 370 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 429
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 430 VPITRLLSDMY 440
>gi|147900594|ref|NP_001090633.1| nuclear receptor subfamily 2, group E, member 3 [Xenopus (Silurana)
tropicalis]
gi|115392210|gb|ABI96907.1| nuclear hormone receptor Nr2e3 [Xenopus (Silurana) tropicalis]
Length = 404
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 136/221 (61%), Gaps = 4/221 (1%)
Query: 61 PSHHHPSMFLATHQPPPHPGLLQI----LMSAEKCQETTARLLFMAVRWVRCLAPFQTLS 116
P ++ + +++P P QI S E ET+ARLL MAV+W + L F L
Sbjct: 182 PEEADENIDVTSNEPERTPTDFQISGFPTSSPEGVYETSARLLLMAVKWAKNLPVFSNLP 241
Query: 117 KRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL 176
RDQ++LL+E+W ELFLL QWS+P D L++ ++ V +++++QE +
Sbjct: 242 FRDQVILLEEAWSELFLLCAIQWSMPLDSCPLLSVPDLSSQVHGKSVSSTIDVRILQETI 301
Query: 177 ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
+RF+ L+ D +E C+KAV+LF PET GL D + +E LQDQ+Q +L + R +Y QP R
Sbjct: 302 SRFKSLNVDPTEFACLKAVLLFKPETRGLKDPEQIENLQDQSQMMLAQHTRNQYPAQPVR 361
Query: 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
FG+LLL+ PSLR + IE LFF TIG+ P+++LL DM+
Sbjct: 362 FGKLLLLSPSLRFISSERIELLFFHRTIGNTPMEKLLCDMF 402
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 253 STIERLFFKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGD 307
STI+ +ETI + + K+ ET GL D + +E LQDQ+Q +L
Sbjct: 290 STIDVRILQETISRFKSLNVDPTEFACLKAVLLFKPETRGLKDPEQIENLQDQSQMMLAQ 349
Query: 308 YVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 360
+ R +Y QP RFG+LLL+ PSLR + IE LFF TIG+ P+++LL DM+
Sbjct: 350 HTRNQYPAQPVRFGKLLLLSPSLRFISSERIELLFFHRTIGNTPMEKLLCDMF 402
>gi|395534716|ref|XP_003769385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Sarcophilus harrisii]
Length = 385
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 164/305 (53%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSV--------KIP 45
VQHERGPR I H +++ PH P S L P ++V ++
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAPHFP--SAALPAPAFFTAVTQLEQHNLELA 145
Query: 46 PTVLYPPS----GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFM 101
P GL P P +P H+ P L + + C E+ ARLLFM
Sbjct: 146 AVSGTPERQTLVGLAQPTP---KYP------HEVNGAPMYLYEVATESVC-ESAARLLFM 195
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+++W + + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+
Sbjct: 196 SIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGENTDS 255
Query: 162 D--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLSKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|126310401|ref|XP_001368385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Monodelphis domestica]
Length = 385
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 164/305 (53%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSV--------KIP 45
VQHERGPR I H +++ PH P S L P ++V ++
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAPHFP--SAALPAPAFFTAVTQLEQHNLELA 145
Query: 46 PTVLYPPS----GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFM 101
P GL P P +P H+ P L + + C E+ ARLLFM
Sbjct: 146 AVSGTPERQTLVGLAQPTP---KYP------HEVNGAPMYLYEVATESVC-ESAARLLFM 195
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+++W + + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+
Sbjct: 196 SIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGENTDS 255
Query: 162 D--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLSKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|291225515|ref|XP_002732745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 405
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 130/213 (61%), Gaps = 8/213 (3%)
Query: 65 HPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLL 124
HPS L + P H L E ET ARLLFM V+W R + F TL RDQ +LL
Sbjct: 198 HPS-HLVSESPVYHTAL-------ESVHETAARLLFMTVKWARNIPSFLTLPFRDQAILL 249
Query: 125 QESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSP 184
+E W ELFLL AQW+IP +L L++ A + +I+ +Q+ ++RF +
Sbjct: 250 EEGWNELFLLSAAQWAIPLELGSLLSAISAHPNNGDKMPCLMADIRTLQDTMSRFNAMQV 309
Query: 185 DGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLML 244
D +E C+KAV+LF PET GL + VE LQDQAQ +LG+Y R+ Q RFGRLLL+L
Sbjct: 310 DATEYACLKAVVLFKPETRGLREMVQVETLQDQAQLMLGEYTHARFPSQRVRFGRLLLLL 369
Query: 245 PSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
P+L+AV IE +FF+ TIG IPI+RLL DM+
Sbjct: 370 PALKAVSARAIEEIFFRRTIGSIPIERLLCDMF 402
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL + VE LQDQAQ +LG+Y R+ Q RFGRLLL+LP+L+AV IE +FF
Sbjct: 326 ETRGLREMVQVETLQDQAQLMLGEYTHARFPSQRVRFGRLLLLLPALKAVSARAIEEIFF 385
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG IPI+RLL DM+
Sbjct: 386 RRTIGSIPIERLLCDMF 402
>gi|72099629|ref|XP_789465.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 457
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 169/326 (51%), Gaps = 49/326 (15%)
Query: 1 VQHERGPRKPKIHNAHHQDSK-------LEPHNPHHSPDLLP-PNGISSVKIPPTVLYPP 52
VQHERGPRKPK D++ + P + L P P +P T+ + P
Sbjct: 129 VQHERGPRKPKNKPMVSIDARSTGTPGTIRSQTPTSTTSLSPLPRHTGHSILPLTIPHRP 188
Query: 53 --------SGLKSP-PPPSH-----------HHPSMFLATH-------------QPPPHP 79
+G +P PPPS + S+ A H
Sbjct: 189 LTGDKSSLTGASAPLPPPSSGFISTSVYYGTFYHSLLTAEHYNINPLALDAVRQDDGGEV 248
Query: 80 GLLQIL--MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLA 137
G ++ L S + E TARLLF +V+W + + F+ L RDQL+LL+E+W++LFL+ +
Sbjct: 249 GRVKGLGTTSPDNLLEVTARLLFTSVKWAKNITCFRLLPFRDQLILLEETWRDLFLMGMC 308
Query: 138 QWSIPWDLSLLINC------EKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGC 191
QW++P + L+ K + + +++ ++E +A+ R + D +E C
Sbjct: 309 QWAVPLESDALLKSLAVSMSVKGVKTSAETTAELAAQVRYMKETVAKLRAMKVDFTEFAC 368
Query: 192 MKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVR 251
+KA+ LF ET GL + VE LQDQAQ +LGDYVR + QP RFGRLLLML +LRAV
Sbjct: 369 LKAIALFKSETRGLSEPHRVESLQDQAQVMLGDYVRYAHLSQPPRFGRLLLMLSALRAVS 428
Query: 252 QSTIERLFFKETIGDIPIQRLLGDMY 277
+E+LFFK+ IG+IPI+RLL DM+
Sbjct: 429 SKFLEKLFFKQIIGEIPIERLLSDMF 454
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 69/107 (64%), Gaps = 5/107 (4%)
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGDYVRGRY 313
+ KET+ + ++ + K+ ET GL + VE LQDQAQ +LGDYVR +
Sbjct: 348 YMKETVAKLRAMKVDFTEFACLKAIALFKSETRGLSEPHRVESLQDQAQVMLGDYVRYAH 407
Query: 314 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 360
QP RFGRLLLML +LRAV +E+LFFK+ IG+IPI+RLL DM+
Sbjct: 408 LSQPPRFGRLLLMLSALRAVSSKFLEKLFFKQIIGEIPIERLLSDMF 454
>gi|444709054|gb|ELW50086.1| Nuclear receptor subfamily 2 group E member 1 [Tupaia chinensis]
Length = 441
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 168/305 (55%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V T L P S
Sbjct: 144 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV----TQLEPHS 197
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
L+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 198 -LELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 255
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 256 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 311
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 312 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 371
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 372 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 431
Query: 273 LGDMY 277
L DMY
Sbjct: 432 LSDMY 436
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 366 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 425
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 426 VPITRLLSDMY 436
>gi|327285350|ref|XP_003227397.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Anolis
carolinensis]
Length = 418
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 169/311 (54%), Gaps = 34/311 (10%)
Query: 1 VQHERGPRKPKIH--NAHHQDSKLEPHNPHHSPDLLPPNGISSV-KIPPTVLYPPSG--- 54
VQ+ER PR +A DS+ +P + + D PP+ + +PP+ P S
Sbjct: 106 VQNERQPRSTAQVRLDAIDLDSERQPEHLATTRDAAPPSLPPACPSLPPSHRAPTSCSVT 165
Query: 55 ----LKSPPPPSHHH--PSMFLA-----------------THQPPPHPGLLQIL-----M 86
++P PPS+H S+ A T P PG +
Sbjct: 166 GASRARAPTPPSNHRFMASLMTAETCAKLEPEDADENIDVTGNEPERPGGEAHVSPYPTA 225
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P +
Sbjct: 226 SPESVYETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLETC 285
Query: 147 LLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
L++ L V +I+ +QE++ARF+ L+ D +E CMKA++LF PET GL
Sbjct: 286 PLLSVSDLAPALNGKLVSGGTDIRALQEVIARFKALAVDPTEFACMKAIVLFKPETRGLK 345
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQDQ+Q +LG + + Y QP RFG+LLL+LPSL+ + IE LFF+ TIG+
Sbjct: 346 DPDQVENLQDQSQVMLGQHNQIHYPSQPVRFGKLLLLLPSLKFISSDRIELLFFRRTIGN 405
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 406 TPMEKLLCDMF 416
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 54/77 (70%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D VE LQDQ+Q +LG + + Y QP RFG+LLL+LPSL+ + IE LFF
Sbjct: 340 ETRGLKDPDQVENLQDQSQVMLGQHNQIHYPSQPVRFGKLLLLLPSLKFISSDRIELLFF 399
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P+++LL DM+
Sbjct: 400 RRTIGNTPMEKLLCDMF 416
>gi|348524801|ref|XP_003449911.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Oreochromis niloticus]
Length = 385
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 165/311 (53%), Gaps = 52/311 (16%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHS-PDLLPPNGISSVKIPP------ 46
VQHERGPR I H + + H P S P PP + ++ P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEVNGSSAHFPGSSLPG--PPFFTTVTQLEPHNLEMS 145
Query: 47 TVLYPPS-----GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFM 101
TV P GL P P +P H+ P L + + C E+ ARLLFM
Sbjct: 146 TVATTPERQAIVGLAQPTP---KYP------HEVSGTPMYLYEVATESVC-ESAARLLFM 195
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI--------NCEK 153
+++W + + F TL DQL+LL+++W+ELF+L +AQW+IP D + L+ N E
Sbjct: 196 SIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGMNTENTES 255
Query: 154 ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF-------TPETPGLV 206
R ++ +EI+ +QE++ RFRQ+ D +E C+K ++ F + E
Sbjct: 256 QRMN------KIMSEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAVPTHGSTELRSFR 309
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR+V STIE +FFK+TIG+
Sbjct: 310 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKTIGN 369
Query: 267 IPIQRLLGDMY 277
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 55/79 (69%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E +A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR+V STIE +
Sbjct: 302 STELRSFRNASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEV 361
Query: 342 FFKETIGDIPIQRLLGDMY 360
FFK+TIG++PI RLL DMY
Sbjct: 362 FFKKTIGNVPITRLLSDMY 380
>gi|348524799|ref|XP_003449910.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Oreochromis niloticus]
Length = 396
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/311 (36%), Positives = 165/311 (53%), Gaps = 52/311 (16%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHS-PDLLPPNGISSVKIPP------ 46
VQHERGPR I H + + H P S P PP + ++ P
Sbjct: 99 VQHERGPRTSTIRKQVALYFRGHKEVNGSSAHFPGSSLPG--PPFFTTVTQLEPHNLEMS 156
Query: 47 TVLYPPS-----GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFM 101
TV P GL P P +P H+ P L + + C E+ ARLLFM
Sbjct: 157 TVATTPERQAIVGLAQPTP---KYP------HEVSGTPMYLYEVATESVC-ESAARLLFM 206
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI--------NCEK 153
+++W + + F TL DQL+LL+++W+ELF+L +AQW+IP D + L+ N E
Sbjct: 207 SIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGMNTENTES 266
Query: 154 ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF-------TPETPGLV 206
R ++ +EI+ +QE++ RFRQ+ D +E C+K ++ F + E
Sbjct: 267 QRMN------KIMSEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAVPTHGSTELRSFR 320
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR+V STIE +FFK+TIG+
Sbjct: 321 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKTIGN 380
Query: 267 IPIQRLLGDMY 277
+PI RLL DMY
Sbjct: 381 VPITRLLSDMY 391
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 55/79 (69%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E +A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR+V STIE +
Sbjct: 313 STELRSFRNASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEV 372
Query: 342 FFKETIGDIPIQRLLGDMY 360
FFK+TIG++PI RLL DMY
Sbjct: 373 FFKKTIGNVPITRLLSDMY 391
>gi|321478244|gb|EFX89201.1| tailless-like protein [Daphnia pulex]
Length = 337
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 154/286 (53%), Gaps = 44/286 (15%)
Query: 1 VQHERGPRKPKIHN------AHHQDSKLEPHNPHHS---PDLLPPNGISSVKIPPTVLYP 51
VQHERGPR + + + P N + S D PP S+ + P +
Sbjct: 82 VQHERGPRNSTLRRQMSMFYSMKGSTSSSPENNNGSTADADSPPP---STGRASPLM--- 135
Query: 52 PSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAP 111
PSG+ +PPP E E+ ARLLFM VRW + +
Sbjct: 136 PSGMTTPPP----------------------------ETICESAARLLFMNVRWAKSVPA 167
Query: 112 FQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKL 171
F TL RDQ++LL+ESW+ELF+L AQ+++P + L+ + + +EIK
Sbjct: 168 FTTLPSRDQIILLEESWRELFVLGAAQFTLPIEAGTLMTALGLSSSPTERQLGLLSEIKA 227
Query: 172 IQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYS 231
QE +A+F+Q++ D +E C++AVILF + GL D LQDQAQ L YV Y
Sbjct: 228 FQETVAKFKQMNVDATEYACLRAVILFK-TSAGLRDIPSAVNLQDQAQLTLSRYVSTAYP 286
Query: 232 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
QP RFGRLLL+LP+LR + STIE LFF++TIG+IPI+R++ DMY
Sbjct: 287 NQPLRFGRLLLLLPALRTIAPSTIEELFFRKTIGNIPIERIISDMY 332
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Query: 260 FKETIGDIPIQRLLGDMYTMEKSY----ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR 315
F+ET+ + Y ++ + GL D LQDQAQ L YV Y
Sbjct: 228 FQETVAKFKQMNVDATEYACLRAVILFKTSAGLRDIPSAVNLQDQAQLTLSRYVSTAYPN 287
Query: 316 QPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 360
QP RFGRLLL+LP+LR + STIE LFF++TIG+IPI+R++ DMY
Sbjct: 288 QPLRFGRLLLLLPALRTIAPSTIEELFFRKTIGNIPIERIISDMY 332
>gi|57525699|ref|NP_001003608.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
gi|50418146|gb|AAH77146.1| Nuclear receptor subfamily 2, group E, member 1 [Danio rerio]
gi|116517486|gb|ABJ99095.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
Length = 396
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 163/306 (53%), Gaps = 42/306 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHS-PDLLPPNGISSVKIPP------ 46
VQHERGPR I H + + H P S P PP + ++ P
Sbjct: 99 VQHERGPRTSTIRKQVALYFRGHKEVNGSSTHFPSTSIPG--PPFFTTVTQLEPHNLELN 156
Query: 47 TVLYPPS-----GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFM 101
TV P GL P P +P H+ P L + + C E+ ARLLFM
Sbjct: 157 TVTSTPERQAIVGLAQPTP---KYP------HEVSGTPMYLYEVATESVC-ESAARLLFM 206
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+++W + + F TL DQL+LL+++W+ELF+L +AQW+IP D S L+ D
Sbjct: 207 SIKWAKSVPAFSTLPLPDQLILLEDAWRELFVLGIAQWAIPVDSSTLLAVSGMNTE-NTD 265
Query: 162 DVRVN---NEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPV 211
R+N +EI+ +QE++ RFRQL D +E C+K ++ F E +A +
Sbjct: 266 SQRLNKIISEIQALQEVVTRFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNASAI 325
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR+V STIE +FFK+TIG++PI R
Sbjct: 326 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVGPSTIEEVFFKKTIGNVPITR 385
Query: 272 LLGDMY 277
LL DMY
Sbjct: 386 LLSDMY 391
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR+V STIE +FFK+TIG+
Sbjct: 321 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVGPSTIEEVFFKKTIGN 380
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 381 VPITRLLSDMY 391
>gi|147904762|ref|NP_001079280.1| nuclear receptor subfamily 2 group E member 1 [Xenopus laevis]
gi|6094490|sp|P70052.1|NR2E1_XENLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=xTLL
gi|1527203|gb|AAB07732.1| orphan nuclear receptor XTLL [Xenopus laevis]
Length = 386
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 161/304 (52%), Gaps = 37/304 (12%)
Query: 1 VQHERGPRKPKIHNA----HHQDSKLEPHNPHHSPDLLP-PNGISSVK--------IPPT 47
VQHERGPR I ++ H S LP P ++V+ +
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEVNGSTQHFSSTALPTPTFFTTVRQLEAHNLELAAI 147
Query: 48 VLYPPS----GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAV 103
P GL P P +P H+ P L + C E+ ARLLFM++
Sbjct: 148 STVPERQTLVGLAQPTP---KYP------HEVNGAPLYLYEFATESVC-ESAARLLFMSI 197
Query: 104 RWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE--KARERLPPD 161
+W + + F TLS +DQL+LL+++W+ELF+L +AQW+IP D S L+ P
Sbjct: 198 KWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDASTLLAVSGMNNENTESPK 257
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP--------ETPGLVDAQPVEM 213
++ +EI+ +Q++++RFRQL D +E C+K ++ F E +A +
Sbjct: 258 LNKIISEIQALQDVVSRFRQLRLDATEFACLKCIVTFKAGVSTHSGSELRNFRNAAAISA 317
Query: 214 LQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLL 273
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI R+L
Sbjct: 318 LQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIGNVPITRVL 377
Query: 274 GDMY 277
DMY
Sbjct: 378 SDMY 381
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 311 NAAAISALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIGN 370
Query: 350 IPIQRLLGDMY 360
+PI R+L DMY
Sbjct: 371 VPITRVLSDMY 381
>gi|300676833|gb|ADK26709.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
gi|300676928|gb|ADK26800.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
Length = 385
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 165/307 (53%), Gaps = 44/307 (14%)
Query: 1 VQHERGPRKPKIHN-------AHHQDS---------KLEPHNPHHSPDLLPPNGISSVKI 44
VQHERGPR I H ++S L + L P+G+ +
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEESGGAPHFPAAALPAPAFFTAVSQLEPHGLELAAV 147
Query: 45 PPT-VLYPPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAV 103
T GL P P +P H+ P L + + C E+ ARLLFM++
Sbjct: 148 TGTPERQALVGLAQPTP---KYP------HEVNGTPMYLYEVATESVC-ESAARLLFMSI 197
Query: 104 RWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV 163
+W + + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 198 KWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNT 253
Query: 164 ------RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQP 210
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A
Sbjct: 254 DSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAA 313
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
+ LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI
Sbjct: 314 IAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPIT 373
Query: 271 RLLGDMY 277
RLL DMY
Sbjct: 374 RLLSDMY 380
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|449273615|gb|EMC83088.1| Nuclear receptor subfamily 2 group E member 1, partial [Columba
livia]
Length = 376
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 168/318 (52%), Gaps = 66/318 (20%)
Query: 1 VQHERGPRKPKIHN-------AHHQDS---------------------KLEPHNPHHSPD 32
VQHERGPR I H ++S +LEPH
Sbjct: 79 VQHERGPRTSTIRKQVALYFRGHKEESGGAPHFPAAALPAPAFFTAVSQLEPHG------ 132
Query: 33 LLPPNGISSVKIPPTVLYPPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQ 92
L ++S T++ GL P P +P H+ P L + + C
Sbjct: 133 -LELAAVASTPERQTLV----GLAQPTP---KYP------HEVNGTPMYLYEVATESVC- 177
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E+ ARLLFM+++W + + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+
Sbjct: 178 ESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL--- 234
Query: 153 KARERLPPDDV------RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------ 200
A + D+ ++ +EI+ +QE++ARFRQL D +E C+K ++ F
Sbjct: 235 -AVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSG 293
Query: 201 -ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
E +A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +F
Sbjct: 294 SELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVF 353
Query: 260 FKETIGDIPIQRLLGDMY 277
FK+TIG++PI RLL DMY
Sbjct: 354 FKKTIGNVPITRLLSDMY 371
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 301 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 360
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 361 VPITRLLSDMY 371
>gi|449267650|gb|EMC78568.1| Photoreceptor-specific nuclear receptor [Columba livia]
Length = 406
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 167/309 (54%), Gaps = 42/309 (13%)
Query: 1 VQHERGPRKPKIH--NAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSP 58
VQ+ER PR ++ D++L P + + ++ PP + + P + G + P
Sbjct: 106 VQNERQPRSTAQVRLDSIELDTELPPEHVATTREV-PPTPCPAPRGPGATIAVTPGPRVP 164
Query: 59 PPPSHH-----------------------------HPSMFLATHQPPPHPGLLQILMSAE 89
PP++H P +Q P+P S E
Sbjct: 165 TPPTNHRFMASLMTAETCAKLEPEDADETVDVMGSEPERAAGEYQVAPYPA-----ASPE 219
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD-LSLL 148
ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P + LL
Sbjct: 220 NVYETSARLLFMAVKWAKTLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPLESCPLL 279
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E A +L P + +I+ +QE L+RF+ L+ D +E CMKAV+LF PET GL D
Sbjct: 280 AVPEPAPGKLLPTAL----DIRALQETLSRFKALAVDPTEFACMKAVVLFKPETRGLKDP 335
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+ VE LQDQ+Q +LG + R Y QP RFG+LLL+LP+LR + +E LFF+ TIG+ P
Sbjct: 336 EQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFFRRTIGNTP 395
Query: 269 IQRLLGDMY 277
+++LL DM+
Sbjct: 396 MEKLLCDMF 404
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +LG + R Y QP RFG+LLL+LP+LR + +E LFF
Sbjct: 328 ETRGLKDPEQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFF 387
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P+++LL DM+
Sbjct: 388 RRTIGNTPMEKLLCDMF 404
>gi|224062203|ref|XP_002192483.1| PREDICTED: photoreceptor-specific nuclear receptor [Taeniopygia
guttata]
Length = 404
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 171/309 (55%), Gaps = 44/309 (14%)
Query: 1 VQHERGPRK-PKIH-NAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSP 58
VQ+ER PR ++ ++ D++L P + + ++ PP+ + + P + P G ++P
Sbjct: 106 VQNERQPRSTAQVQLDSIQLDAELPPEHVATTCEV-PPSPCPAPRGPGATITP--GPRAP 162
Query: 59 PPPSHH-----------------------------HPSMFLATHQPPPHPGLLQILMSAE 89
PP++H P + +Q P+P S E
Sbjct: 163 TPPTNHRFMASLMTAETCAKLEPEDADETVDVTGSEPERAASEYQMAPYPA-----ASPE 217
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD-LSLL 148
ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P + LL
Sbjct: 218 NIYETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPLESCPLL 277
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E +L P + +++ +QE L RF+ L+ D +E CMKAV+LF PET GL D
Sbjct: 278 AVPEPTSGKLLPATL----DVRALQETLGRFKALAVDPTEFACMKAVVLFKPETRGLKDP 333
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+ VE LQDQ+Q +LG + R Y QP RFG+LLL+LP+LR + +E LFF+ TIG+ P
Sbjct: 334 EQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFFRRTIGNTP 393
Query: 269 IQRLLGDMY 277
+++LL DM+
Sbjct: 394 MEKLLCDMF 402
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +LG + R Y QP RFG+LLL+LP+LR + +E LFF
Sbjct: 326 ETRGLKDPEQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFISSERVELLFF 385
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P+++LL DM+
Sbjct: 386 RRTIGNTPMEKLLCDMF 402
>gi|443688970|gb|ELT91492.1| hypothetical protein CAPTEDRAFT_53417, partial [Capitella teleta]
Length = 390
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 167/312 (53%), Gaps = 44/312 (14%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSP-----DLLP---PNGISSVKIPPTVLYPP 52
VQHER PR + + +DS ++ P P D LP P + + + P
Sbjct: 85 VQHERAPRCYQ----YKRDSPVDL--PGDRPLSGREDRLPAPMPGHLPAAAHQAAFMRPI 138
Query: 53 SGLKSPPPPSH---HHPSMFLATHQPPPHPGLLQIL---MSAEKCQETTARLLFMAVRWV 106
+ L S P H HH LA P+ +Q+ ++A+ ET ARLLFM+V+W
Sbjct: 139 TSLLSTPTTGHLPFHHT---LAGMPSLPNMEPMQLNPNGLAADNIYETAARLLFMSVKWA 195
Query: 107 RCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD--VR 164
R + F L RDQ +LL+ESW ELF+L AQWS+P D + L++ P D
Sbjct: 196 RNIPSFLQLPFRDQAILLEESWSELFILSAAQWSLPLDPNSLLSANGVANDNHPSDTPAA 255
Query: 165 VNNEIKLIQEILARFRQLSPDGSECGCMKAVILF-------------------TPETPGL 205
+ +I+ +++I+ARF L D +EC C+KA++LF + E P L
Sbjct: 256 MMAQIRAMKDIVARFNALRVDATECACLKALVLFKAGRHLVVFGSIISVTKLPSSELPEL 315
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
D VE LQDQAQ +L DY+ +Y RFG+L+L+LP+L+ + T+ERLFF +TIG
Sbjct: 316 RDCSQVESLQDQAQLMLRDYIFQQYPSNKFRFGKLILLLPALKTISPRTLERLFFGKTIG 375
Query: 266 DIPIQRLLGDMY 277
++P++RLL DM+
Sbjct: 376 NVPVERLLCDMF 387
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Query: 272 LLGDMYTMEK--SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 329
+ G + ++ K S E P L D VE LQDQAQ +L DY+ +Y RFG+L+L+LP+
Sbjct: 297 VFGSIISVTKLPSSELPELRDCSQVESLQDQAQLMLRDYIFQQYPSNKFRFGKLILLLPA 356
Query: 330 LRAVRQSTIERLFFKETIGDIPIQRLLGDMY 360
L+ + T+ERLFF +TIG++P++RLL DM+
Sbjct: 357 LKTISPRTLERLFFGKTIGNVPVERLLCDMF 387
>gi|410916891|ref|XP_003971920.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Takifugu rubripes]
Length = 385
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 165/309 (53%), Gaps = 48/309 (15%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHS-PDLLPPNGISSVKIPP------ 46
VQHERGPR I H + + H P S P PP + ++ P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEVNGSAAHFPGSSLPG--PPFFTTVAQLEPHNLDLS 145
Query: 47 TVLYPPS-----GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFM 101
TV P GL P P +P H+ P L + + C E+ ARLLFM
Sbjct: 146 TVASTPERQTIVGLAQPTP---KYP------HEVSGTPMYLYEVATESVC-ESAARLLFM 195
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI-----NCEKAR- 155
+++W + + F TL DQL+LL+++W+ELF+L +AQW+IP D + L+ N E
Sbjct: 196 SIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDPTTLLAVSGMNTENTES 255
Query: 156 ERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF-------TPETPGLVDA 208
+R+ ++ +EI+ +QE++ RFRQ+ D +E C+K ++ F E +A
Sbjct: 256 QRM----TKIMSEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAVPTQGNAEIRSFRNA 311
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+ LQD+AQ L Y+ RY QP RFG+LLL+LPSL ++ STIE +FFK+TIG++P
Sbjct: 312 SAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLHSISPSTIEEVFFKKTIGNVP 371
Query: 269 IQRLLGDMY 277
I RLL DMY
Sbjct: 372 ITRLLSDMY 380
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 52/71 (73%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LPSL ++ STIE +FFK+TIG+
Sbjct: 310 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLHSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>gi|391330852|ref|XP_003739866.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Metaseiulus occidentalis]
Length = 467
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 122/199 (61%), Gaps = 10/199 (5%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS-- 146
E ET+ARLLFMA++W R L F L RDQ++LL+E+W ELF+L QW +P D S
Sbjct: 267 ESIYETSARLLFMAIKWARNLPSFANLPFRDQVILLEETWSELFVLCAIQWCLPLDSSTS 326
Query: 147 --------LLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
IN + ++ + N IK +QEIL++FR + D +E C+KA+ILF
Sbjct: 327 THPSIHPLFDINEHMSTSATLKGNLGLLNSIKQLQEILSKFRSVCVDPAEFACLKAIILF 386
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
+ GL D VE LQDQAQ +L +VR ++ P RFGRLLLMLPSLR V IE L
Sbjct: 387 RADARGLKDCHHVEALQDQAQLMLQQHVRSQHPTHPVRFGRLLLMLPSLRTVSSDKIESL 446
Query: 259 FFKETIGDIPIQRLLGDMY 277
FF++ IG P+++LL DM+
Sbjct: 447 FFQKIIGSTPMEKLLCDMF 465
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQDQAQ +L +VR ++ P RFGRLLLMLPSLR V IE LFF++
Sbjct: 392 GLKDCHHVEALQDQAQLMLQQHVRSQHPTHPVRFGRLLLMLPSLRTVSSDKIESLFFQKI 451
Query: 347 IGDIPIQRLLGDMY 360
IG P+++LL DM+
Sbjct: 452 IGSTPMEKLLCDMF 465
>gi|432850556|ref|XP_004066809.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 431
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 126/191 (65%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S+E ET+ARLLFM+V+W + L F L RDQ++LL+E+W ELFLL QWS+P D
Sbjct: 239 SSENVYETSARLLFMSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLDSC 298
Query: 147 LLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
L++ + +++L+QE +RF+ L+ D +E C+KA++LF PET GL
Sbjct: 299 PLLSLPDLCPGMQGKTSYTGLDLRLLQEAFSRFKALAVDPTEFACLKAIVLFKPETRGLK 358
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +LG ++R Y QP RFG+LLL+LPSLR V IE LFF TIG+
Sbjct: 359 DPEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIGN 418
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 419 TPMEKLLCDMF 429
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +LG ++R Y QP RFG+LLL+LPSLR V IE LFF
Sbjct: 353 ETRGLKDPEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFF 412
Query: 344 KETIGDIPIQRLLGDMY 360
TIG+ P+++LL DM+
Sbjct: 413 HRTIGNTPMEKLLCDMF 429
>gi|410916893|ref|XP_003971921.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Takifugu rubripes]
gi|21538834|gb|AAM61763.1|AF461063_2 nuclear receptor 2E1 [Takifugu rubripes]
Length = 396
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 165/309 (53%), Gaps = 48/309 (15%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHS-PDLLPPNGISSVKIPP------ 46
VQHERGPR I H + + H P S P PP + ++ P
Sbjct: 99 VQHERGPRTSTIRKQVALYFRGHKEVNGSAAHFPGSSLPG--PPFFTTVAQLEPHNLDLS 156
Query: 47 TVLYPPS-----GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFM 101
TV P GL P P +P H+ P L + + C E+ ARLLFM
Sbjct: 157 TVASTPERQTIVGLAQPTP---KYP------HEVSGTPMYLYEVATESVC-ESAARLLFM 206
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI-----NCEKAR- 155
+++W + + F TL DQL+LL+++W+ELF+L +AQW+IP D + L+ N E
Sbjct: 207 SIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDPTTLLAVSGMNTENTES 266
Query: 156 ERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF-------TPETPGLVDA 208
+R+ ++ +EI+ +QE++ RFRQ+ D +E C+K ++ F E +A
Sbjct: 267 QRM----TKIMSEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAVPTQGNAEIRSFRNA 322
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+ LQD+AQ L Y+ RY QP RFG+LLL+LPSL ++ STIE +FFK+TIG++P
Sbjct: 323 SAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLHSISPSTIEEVFFKKTIGNVP 382
Query: 269 IQRLLGDMY 277
I RLL DMY
Sbjct: 383 ITRLLSDMY 391
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 52/71 (73%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LPSL ++ STIE +FFK+TIG+
Sbjct: 321 NASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLHSISPSTIEEVFFKKTIGN 380
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 381 VPITRLLSDMY 391
>gi|348533763|ref|XP_003454374.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 426
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 127/190 (66%)
Query: 88 AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSL 147
+E ET+ARLLFM+V+W + L F L RDQ++LL+E+W ELFLL QWS+P D
Sbjct: 235 SENVYETSARLLFMSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLDSCP 294
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
L++ + + +++L+QE+ +RF+ L+ D +E C+KA++LF PET GL D
Sbjct: 295 LLSLPDLCPGMQGKTSYTSLDLRLLQEVFSRFKALAVDPTEFACLKAIVLFKPETRGLKD 354
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDI 267
+ VE LQDQ+Q +LG ++R Y QP RFG+LLL+LPSLR V IE LFF TIG+
Sbjct: 355 PEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIGNT 414
Query: 268 PIQRLLGDMY 277
P+++LL DM+
Sbjct: 415 PMEKLLCDMF 424
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +LG ++R Y QP RFG+LLL+LPSLR V IE LFF
Sbjct: 348 ETRGLKDPEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFF 407
Query: 344 KETIGDIPIQRLLGDMY 360
TIG+ P+++LL DM+
Sbjct: 408 HRTIGNTPMEKLLCDMF 424
>gi|328707384|ref|XP_001948870.2| PREDICTED: photoreceptor-specific nuclear receptor-like
[Acyrthosiphon pisum]
Length = 510
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 139/221 (62%), Gaps = 10/221 (4%)
Query: 58 PPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSK 117
P P + HH SM+ H P +PGL E ET+ARLLFMAV+W + L F +L
Sbjct: 297 PIPLTQHH-SMY--DHHPSFYPGL------HENVYETSARLLFMAVKWAKNLPSFASLPF 347
Query: 118 RDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-RVNNEIKLIQEIL 176
RDQ++LL+E W ELFLL+ QW +P + + L N +P +V +I+++ E L
Sbjct: 348 RDQVILLEECWSELFLLNAVQWCLPLENNPLFNPSDHVAAIPNGKASQVAADIRVLNETL 407
Query: 177 ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
RFR +S D +E CMKA++LF +T GL D VE LQDQA +LG + R ++ QP R
Sbjct: 408 RRFRTISVDPAEFACMKAIVLFRADTRGLKDPIQVENLQDQAHVMLGQHTRNQHPGQPVR 467
Query: 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
FGRLLLMLP L+ V + IE +FF+ TIG+IP++++L DMY
Sbjct: 468 FGRLLLMLPLLKNVPAARIEAIFFQRTIGNIPMEKVLCDMY 508
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+T GL D VE LQDQA +LG + R ++ QP RFGRLLLMLP L+ V + IE +FF
Sbjct: 432 DTRGLKDPIQVENLQDQAHVMLGQHTRNQHPGQPVRFGRLLLMLPLLKNVPAARIEAIFF 491
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+IP++++L DMY
Sbjct: 492 QRTIGNIPMEKVLCDMY 508
>gi|242004528|ref|XP_002423135.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506081|gb|EEB10397.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 467
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 125/190 (65%), Gaps = 1/190 (0%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E ET+ARLLFMAV+W + L F +L RDQ++LL+E W ELFLL+ QW +P + S L
Sbjct: 276 ETIYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEECWSELFLLNAIQWCLPVESSPL 335
Query: 149 INCEKARERLPP-DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
+ + +P + +I+++ ++L R++ + D +E C+KA++LF ET GL D
Sbjct: 336 FSVNEHAATVPNGKSSQTAADIRVLNDMLLRYKAVGVDPAEFACLKAIVLFKSETRGLKD 395
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDI 267
VE LQDQAQ +LG + RG++ QP RFGRLLLM+P L+ V +E +FF+ TIG+
Sbjct: 396 PLQVENLQDQAQVMLGQHARGQHPTQPARFGRLLLMIPLLKHVPTQRVEHIFFQRTIGNT 455
Query: 268 PIQRLLGDMY 277
P++++L DMY
Sbjct: 456 PMEKVLCDMY 465
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D VE LQDQAQ +LG + RG++ QP RFGRLLLM+P L+ V +E +FF
Sbjct: 389 ETRGLKDPLQVENLQDQAQVMLGQHARGQHPTQPARFGRLLLMIPLLKHVPTQRVEHIFF 448
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++++L DMY
Sbjct: 449 QRTIGNTPMEKVLCDMY 465
>gi|115679027|ref|XP_792757.2| PREDICTED: nuclear receptor subfamily 2 group E member 1-like,
partial [Strongylocentrotus purpuratus]
Length = 297
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 160/309 (51%), Gaps = 38/309 (12%)
Query: 1 VQHERGPRKPKIHN--AHHQDSKLEPHNPHHSPDLLPP---NG----------ISSVKIP 45
VQHERGPR I A + + DL PP NG + ++
Sbjct: 1 VQHERGPRNSTIKKQMALYLKESAAAAAAAAAGDLPPPLLPNGYLPGPAFFHPLLGIESY 60
Query: 46 PTVLYPPSGLKS---------PPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTA 96
P+++ P S P P H P T PP + S + ET A
Sbjct: 61 PSIIVSPVDYTSFSPQAVPCYPTPKYPHEP----VTMMPP--------VGSVDAICETAA 108
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
RLLFM++RWV+ + F L DQL LL+E W+ELF+L AQW + D L+ +
Sbjct: 109 RLLFMSIRWVKNVPAFIGLPYSDQLTLLEEGWRELFILGAAQWQMTVDGPGLMASAGMKP 168
Query: 157 RLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEML 214
P + +++E++++QE++A+FRQL+ D +E C+K +++F + G+ + V L
Sbjct: 169 DTTPAEKLAAISSELRVLQELIAKFRQLNVDDTEFACLKGIVIFKTDISGIKETSSVVTL 228
Query: 215 QDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLG 274
QDQ+Q L Y+ R+ QP RFG+LLL+LPS+RA+R +T+E++FF + +G P LL
Sbjct: 229 QDQSQLALSKYITVRHQTQPYRFGKLLLLLPSVRAIRPTTLEQIFFWKAVGSTPFHTLLT 288
Query: 275 DMYTMEKSY 283
D+Y + +
Sbjct: 289 DLYKKNEHF 297
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
G+ + V LQDQ+Q L Y+ R+ QP RFG+LLL+LPS+RA+R +T+E++FF +
Sbjct: 218 GIKETSSVVTLQDQSQLALSKYITVRHQTQPYRFGKLLLLLPSVRAIRPTTLEQIFFWKA 277
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G P LL D+Y + +
Sbjct: 278 VGSTPFHTLLTDLYKKNEHF 297
>gi|157278483|ref|NP_001098343.1| nuclear receptor subfamily 2 group E member 1 [Oryzias latipes]
gi|9910805|sp|Q9YGL3.1|NR2E1_ORYLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|4468637|emb|CAB38085.1| tailless [Oryzias latipes]
Length = 396
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 165/306 (53%), Gaps = 42/306 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHS-PDLLPPNGISSVKIPPTVLYPP 52
VQHERGPR I H + + H P S P PP + ++ P L
Sbjct: 99 VQHERGPRTSTIRKQVALYFRGHKEVNGSSTHFPGSSLPG--PPFFTTVTQLEPHNLEMS 156
Query: 53 SGLKSP--------PPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVR 104
S +P P+ +P H+ P L + + C E+ ARLLFM+++
Sbjct: 157 SVATTPERQAIVGLAQPTPKYP------HEVSGTPMYLYEVATESVC-ESAARLLFMSIK 209
Query: 105 WVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV- 163
W + + F TL DQL+LL+++W+ELF+L +AQW+IP D + L+ A L +++
Sbjct: 210 WAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDSTTLL----AVSGLNSENME 265
Query: 164 --RVNN---EIKLIQEILARFRQLSPDGSECGCMKAVILF-------TPETPGLVDAQPV 211
R+N EI+ +QE++ RFRQ+ D +E C+K ++ F + E +A +
Sbjct: 266 AQRMNKIMAEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAVPTQGSAELRAFRNASAI 325
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR+V STIE +FFK+ IG++PI R
Sbjct: 326 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKNIGNVPITR 385
Query: 272 LLGDMY 277
LL DMY
Sbjct: 386 LLSDMY 391
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 55/81 (67%)
Query: 280 EKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIE 339
+ S E +A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR+V STIE
Sbjct: 311 QGSAELRAFRNASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIE 370
Query: 340 RLFFKETIGDIPIQRLLGDMY 360
+FFK+ IG++PI RLL DMY
Sbjct: 371 EVFFKKNIGNVPITRLLSDMY 391
>gi|432861654|ref|XP_004069672.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 416
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 135/212 (63%), Gaps = 7/212 (3%)
Query: 70 LATHQPPPHPGLL-QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESW 128
+ ++ P H L S E ET+ARLLFM+V+W + L F L RDQ++LL+ESW
Sbjct: 206 VTSNDPERHDALEGHAFNSIESVYETSARLLFMSVKWTKNLPIFAHLPFRDQVILLEESW 265
Query: 129 KELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVN---NEIKLIQEILARFRQLSPD 185
E+FLL + QWS+P D L++ E P +V+ +++++++E+ RF+ L+ D
Sbjct: 266 SEMFLLCVIQWSLPMDSCPLLS---LPELSPKQQAKVSPPTSDLQILEEVFNRFKALTVD 322
Query: 186 GSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLP 245
+E C+KA++LF PE L D + VE LQDQ+Q +LG ++ Y Q TRFGR+LL+LP
Sbjct: 323 PTEFACLKAIVLFKPEARSLKDPEQVENLQDQSQVLLGQHIYSAYPNQSTRFGRMLLLLP 382
Query: 246 SLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
SL V + I +LFF+ TIG+ P+++LL DM+
Sbjct: 383 SLHFVSSAKIGQLFFQRTIGNTPMEKLLCDMF 414
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E L D + VE LQDQ+Q +LG ++ Y Q TRFGR+LL+LPSL V + I +LFF
Sbjct: 338 EARSLKDPEQVENLQDQSQVLLGQHIYSAYPNQSTRFGRMLLLLPSLHFVSSAKIGQLFF 397
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P+++LL DM+
Sbjct: 398 QRTIGNTPMEKLLCDMF 414
>gi|405974187|gb|EKC38851.1| Photoreceptor-specific nuclear receptor [Crassostrea gigas]
Length = 438
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 125/193 (64%), Gaps = 6/193 (3%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS-L 147
E E +ARLLF+A+RW + L F L RDQ++LL+E+W ELFLL QWS+P + S L
Sbjct: 246 ETMYECSARLLFVAIRWAKNLPSFANLPFRDQVILLEEAWSELFLLCAIQWSMPMETSPL 305
Query: 148 LINCEKARERLPPDDVRVNNEI---KLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
L+ E A+ ++ +++ +E +L+QEI RF+ D +E C+KA+ LF PET G
Sbjct: 306 LMTHEAAQPQM--SNIKTGSEYPDNRLLQEIFRRFKHTQVDPAEFACLKAIALFKPETRG 363
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L D VE QDQAQ ++ +VR Y Q RFGRLLLM+PSL+ V +E++FF TI
Sbjct: 364 LKDPLQVENFQDQAQMMMSQHVRSNYPTQHIRFGRLLLMIPSLKFVPSDRVEKIFFGRTI 423
Query: 265 GDIPIQRLLGDMY 277
G +P+++LL DM+
Sbjct: 424 GSVPMEKLLCDMF 436
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 52/77 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D VE QDQAQ ++ +VR Y Q RFGRLLLM+PSL+ V +E++FF
Sbjct: 360 ETRGLKDPLQVENFQDQAQMMMSQHVRSNYPTQHIRFGRLLLMIPSLKFVPSDRVEKIFF 419
Query: 344 KETIGDIPIQRLLGDMY 360
TIG +P+++LL DM+
Sbjct: 420 GRTIGSVPMEKLLCDMF 436
>gi|126272955|ref|XP_001371421.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Monodelphis domestica]
Length = 405
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 135/216 (62%), Gaps = 5/216 (2%)
Query: 62 SHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQL 121
+ + P L QP +P S E ET+ARLLFMAV+W + L F L RDQ+
Sbjct: 193 TSNEPDRPLTDDQPGSYPS-----TSPENVYETSARLLFMAVKWAKNLPVFSNLPFRDQV 247
Query: 122 LLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQ 181
+LL+E+W ELFLL QWS+P + L++ + + + E +++QE +ARF+
Sbjct: 248 ILLEEAWSELFLLCAIQWSLPLESCPLLSVPDPTPGIQGKLMSASIETQILQETIARFKS 307
Query: 182 LSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLL 241
L+ D +E CMKA++LF PET GL D + VE LQDQ+Q +LG + + Y QP RFG+LL
Sbjct: 308 LTVDPTEFACMKALVLFKPETRGLKDPEQVENLQDQSQVMLGQHNKMHYPSQPVRFGKLL 367
Query: 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
L+LP+LR + IE LFF+ TIG+ P+++LL DM+
Sbjct: 368 LLLPALRFISSDRIELLFFRRTIGNTPMEKLLCDMF 403
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +LG + + Y QP RFG+LLL+LP+LR + IE LFF
Sbjct: 327 ETRGLKDPEQVENLQDQSQVMLGQHNKMHYPSQPVRFGKLLLLLPALRFISSDRIELLFF 386
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P+++LL DM+
Sbjct: 387 RRTIGNTPMEKLLCDMF 403
>gi|410912674|ref|XP_003969814.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Takifugu
rubripes]
Length = 431
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/190 (46%), Positives = 127/190 (66%)
Query: 88 AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSL 147
+E ET+ARLLFM+V+W + L F L RDQ++LL+E+W ELFLL QWS+P +
Sbjct: 240 SENVYETSARLLFMSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLESCP 299
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
L++ + + +++L+QE+ +RF+ L+ D +E C+KA++LF PET GL D
Sbjct: 300 LLSLPDLCPGIQGKGSYTSLDLRLLQEVFSRFKTLAVDPTEFACLKAIVLFKPETRGLKD 359
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDI 267
+ VE LQDQ+Q +LG ++R Y QP RFG+LLL+LPSLR V IE LFF TIG+
Sbjct: 360 PEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIGNT 419
Query: 268 PIQRLLGDMY 277
P+++LL DM+
Sbjct: 420 PMEKLLCDMF 429
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +LG ++R Y QP RFG+LLL+LPSLR V IE LFF
Sbjct: 353 ETRGLKDPEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFF 412
Query: 344 KETIGDIPIQRLLGDMY 360
TIG+ P+++LL DM+
Sbjct: 413 HRTIGNTPMEKLLCDMF 429
>gi|390341307|ref|XP_794533.3| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Strongylocentrotus purpuratus]
Length = 410
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 160/309 (51%), Gaps = 38/309 (12%)
Query: 1 VQHERGPRKPKIHN--AHHQDSKLEPHNPHHSPDLLPP---NG----------ISSVKIP 45
VQHERGPR I A + + DL PP NG + ++
Sbjct: 114 VQHERGPRNSTIKKQMALYLKESAAAAAAAAAGDLPPPLLPNGYLPGPAFFHPLLGIESY 173
Query: 46 PTVLYPPSGLKS---------PPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTA 96
P+++ P S P P H P T PP + S + ET A
Sbjct: 174 PSIIVSPVDYTSFSPQAVPCYPTPKYPHEP----VTMMPP--------VGSVDAICETAA 221
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
RLLFM++RWV+ + F L DQL LL+E W+ELF+L AQW + D L+ +
Sbjct: 222 RLLFMSIRWVKNVPAFIGLPYSDQLTLLEEGWRELFILGAAQWQMTVDGPGLMASAGMKP 281
Query: 157 RLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEML 214
P + +++E++++QE++A+FRQL+ D +E C+K +++F + G+ + V L
Sbjct: 282 DTTPAEKLAAISSELRVLQELIAKFRQLNVDDTEFACLKGIVIFKTDISGIKETSSVVTL 341
Query: 215 QDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLG 274
QDQ+Q L Y+ R+ QP RFG+LLL+LPS+RA+R +T+E++FF + +G P LL
Sbjct: 342 QDQSQLALSKYITVRHQTQPYRFGKLLLLLPSVRAIRPTTLEQIFFWKAVGSTPFHTLLT 401
Query: 275 DMYTMEKSY 283
D+Y + +
Sbjct: 402 DLYKKNEHF 410
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ G+ + V LQDQ+Q L Y+ R+ QP RFG+LLL+LPS+RA+R +T+E++FF
Sbjct: 328 DISGIKETSSVVTLQDQSQLALSKYITVRHQTQPYRFGKLLLLLPSVRAIRPTTLEQIFF 387
Query: 344 KETIGDIPIQRLLGDMYTMEKSY 366
+ +G P LL D+Y + +
Sbjct: 388 WKAVGSTPFHTLLTDLYKKNEHF 410
>gi|47224633|emb|CAG03617.1| unnamed protein product [Tetraodon nigroviridis]
Length = 393
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 166/324 (51%), Gaps = 63/324 (19%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHS-PDLLPPNGISSVKIPP------ 46
VQHERGPR I H + + H P S P PP + ++ P
Sbjct: 81 VQHERGPRTSTIRKQVALYFRGHKEVNGSAAHFPGSSLPG--PPFFTTVTQLEPHNLDLS 138
Query: 47 TVLYPPS-----GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFM 101
TV P GL P P +P H+ P L + + C E+ ARLLFM
Sbjct: 139 TVATTPERQAIVGLAQPTP---KYP------HEVSSTPMYLYEVATESVC-ESAARLLFM 188
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI-----NCEKAR- 155
+++W + + F TL DQL+LL+++W+ELF+L +AQW+IP D + L+ N E
Sbjct: 189 SIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDSTTLLAVSGMNTENTES 248
Query: 156 ERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF----------------- 198
+R+ ++ +EI+ +QE++ RFRQ+ D +E C+K ++ F
Sbjct: 249 QRM----TKIVSEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAGQYHRGSVLGNMCLW 304
Query: 199 -----TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQS 253
E +A + LQD+AQ L Y+ RY QP RFG+LLL+LPSLR+V S
Sbjct: 305 VPTQGNAEIRSFRNASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPSLRSVSPS 364
Query: 254 TIERLFFKETIGDIPIQRLLGDMY 277
TIE +FFK+TIG++PI RLL DMY
Sbjct: 365 TIEEVFFKKTIGNVPITRLLSDMY 388
>gi|354473494|ref|XP_003498970.1| PREDICTED: photoreceptor-specific nuclear receptor [Cricetulus
griseus]
Length = 403
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 126/185 (68%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 217 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCPLLAPP 276
Query: 153 KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
+A V + E++ +QE ++RFR L+ D +E CMKA++LF PET GL D + VE
Sbjct: 277 EASGGSQSRLVLASAEMRFLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVE 336
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+ P+++L
Sbjct: 337 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKL 396
Query: 273 LGDMY 277
L DM+
Sbjct: 397 LCDMF 401
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 325 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 384
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 385 RKTIGNTPMEKLLCDMF 401
>gi|344248427|gb|EGW04531.1| Photoreceptor-specific nuclear receptor [Cricetulus griseus]
Length = 395
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 126/185 (68%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 209 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCPLLAPP 268
Query: 153 KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
+A V + E++ +QE ++RFR L+ D +E CMKA++LF PET GL D + VE
Sbjct: 269 EASGGSQSRLVLASAEMRFLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVE 328
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+ P+++L
Sbjct: 329 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKL 388
Query: 273 LGDMY 277
L DM+
Sbjct: 389 LCDMF 393
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 317 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 376
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 377 RKTIGNTPMEKLLCDMF 393
>gi|449497928|ref|XP_002192943.2| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Taeniopygia guttata]
Length = 532
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 133/205 (64%), Gaps = 17/205 (8%)
Query: 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDL 145
++ E E+ ARLLFM+++W + + F TLS +DQL+LL+++W+ELF+L +AQW+IP D
Sbjct: 327 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 386
Query: 146 SLLINCEKARERLPPDDV------RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFT 199
+ L+ A + D+ ++ +EI+ +QE++ARFRQL D +E C+K ++ F
Sbjct: 387 NTLL----AVSGMNSDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFK 442
Query: 200 P-------ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQ 252
E +A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++
Sbjct: 443 AVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISP 502
Query: 253 STIERLFFKETIGDIPIQRLLGDMY 277
STIE +FFK+TIG++PI RLL DMY
Sbjct: 503 STIEEVFFKKTIGNVPITRLLSDMY 527
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 457 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 516
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 517 VPITRLLSDMY 527
>gi|441617194|ref|XP_004088427.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Nomascus leucogenys]
Length = 562
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 126/191 (65%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 374 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 433
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E ++++E ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 434 EASAAGGAQGRL----TLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLK 489
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL LPSLR + IE LFF++TIG+
Sbjct: 490 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLXLPSLRFITAERIELLFFRKTIGN 549
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 550 TPMEKLLCDMF 560
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL LPSLR + IE LFF
Sbjct: 484 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLXLPSLRFITAERIELLFF 543
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 544 RKTIGNTPMEKLLCDMF 560
>gi|440897500|gb|ELR49170.1| Photoreceptor-specific nuclear receptor, partial [Bos grunniens
mutus]
Length = 427
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 162/302 (53%), Gaps = 27/302 (8%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPH-NPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPP 59
VQ+ER PR +S+ EP P +P L G SS P G ++
Sbjct: 126 VQNERQPRSTAQVRMDSVESETEPRLQPLATPPALA--GPSSRGPTPVSAARALGPQALT 183
Query: 60 PPSHHHPSMFLATHQP----PPHPGLLQILMSA------------------EKCQETTAR 97
PP HHH L T + P I +++ + ET+AR
Sbjct: 184 PPGHHHFMASLITAETCTKLEPEDADENIDVTSNDPEFPSSPYSSSSPCALDSIHETSAR 243
Query: 98 LLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARER 157
LLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+ +A
Sbjct: 244 LLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAG 303
Query: 158 LPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQ 215
V + E +++QE ++RFR L+ D +E CMKA++LF PET GL D + VE LQ
Sbjct: 304 GSSQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQ 363
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
DQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF++TIG+ P+++LL D
Sbjct: 364 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLCD 423
Query: 276 MY 277
M+
Sbjct: 424 MF 425
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Query: 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEML 297
GRL+L R + Q TI R F+ D P + + K ET GL D + VE L
Sbjct: 308 GRLVLASAETR-ILQETISR--FRALAVD-PTEFACMKALVLFKP-ETRGLKDPEHVEAL 362
Query: 298 QDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLG 357
QDQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF++TIG+ P+++LL
Sbjct: 363 QDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLC 422
Query: 358 DMY 360
DM+
Sbjct: 423 DMF 425
>gi|395501668|ref|XP_003755213.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Sarcophilus harrisii]
Length = 327
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 134/216 (62%), Gaps = 5/216 (2%)
Query: 62 SHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQL 121
+ + P LA Q +P S E ET+ARLLFMAV+W + L F L RDQ+
Sbjct: 115 TSNEPERPLADDQQASYPS-----SSPESIYETSARLLFMAVKWAKNLPVFSNLPFRDQV 169
Query: 122 LLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQ 181
+LL+E+W ELFLL QWS+P + L++ + + E +++QE +ARF+
Sbjct: 170 ILLEEAWSELFLLCAIQWSLPLESCPLLSVPDPTPGIQGKLMSAPIETQILQETIARFKS 229
Query: 182 LSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLL 241
L+ D +E CMKA++LF PET GL D + VE LQDQ+Q +LG + + Y QP RFG+LL
Sbjct: 230 LTVDPTEFACMKALVLFKPETRGLKDPEQVENLQDQSQVMLGQHNKMHYPSQPVRFGKLL 289
Query: 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
L+LPSLR + IE LFF+ TIG+ P+++LL DM+
Sbjct: 290 LLLPSLRFISSDRIELLFFRRTIGNTPMEKLLCDMF 325
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +LG + + Y QP RFG+LLL+LPSLR + IE LFF
Sbjct: 249 ETRGLKDPEQVENLQDQSQVMLGQHNKMHYPSQPVRFGKLLLLLPSLRFISSDRIELLFF 308
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P+++LL DM+
Sbjct: 309 RRTIGNTPMEKLLCDMF 325
>gi|269315847|ref|NP_001161372.1| photoreceptor-specific nuclear receptor [Bos taurus]
gi|296483590|tpg|DAA25705.1| TPA: photoreceptor-specific nuclear receptor [Bos taurus]
Length = 411
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 162/302 (53%), Gaps = 27/302 (8%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPH-NPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPP 59
VQ+ER PR +S+ EP P +P L G SS P G ++
Sbjct: 110 VQNERQPRSTAQVRMDSVESETEPRLQPLATPPALA--GPSSRGPTPVSAARALGPQALM 167
Query: 60 PPSHHHPSMFLATHQP----PPHPGLLQILMSA------------------EKCQETTAR 97
PP HHH L T + P I +++ + ET+AR
Sbjct: 168 PPGHHHFMASLITAETCTKLEPEDADENIDVTSNDPEFPSSPYSSSSPCALDSIHETSAR 227
Query: 98 LLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARER 157
LLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+ +A
Sbjct: 228 LLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAG 287
Query: 158 LPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQ 215
V + E +++QE ++RFR L+ D +E CMKA++LF PET GL D + VE LQ
Sbjct: 288 GSSQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQ 347
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
DQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF++TIG+ P+++LL D
Sbjct: 348 DQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLCD 407
Query: 276 MY 277
M+
Sbjct: 408 MF 409
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Query: 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEML 297
GRL+L R + Q TI R F+ D P + + K ET GL D + VE L
Sbjct: 292 GRLVLASAETR-ILQETISR--FRALAVD-PTEFACMKALVLFKP-ETRGLKDPEHVEAL 346
Query: 298 QDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLG 357
QDQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF++TIG+ P+++LL
Sbjct: 347 QDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLC 406
Query: 358 DMY 360
DM+
Sbjct: 407 DMF 409
>gi|443724903|gb|ELU12704.1| hypothetical protein CAPTEDRAFT_226190 [Capitella teleta]
Length = 393
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 136/240 (56%), Gaps = 14/240 (5%)
Query: 52 PSGLKSPPPPSHHHPSMFLATHQPP--PHPGLLQILMSAEKCQETTARLLFMAVRWVRCL 109
P G SP + SM L H P PH + + E E ARLLFM+V+W + +
Sbjct: 149 PHGALSPIEAARIPTSMGLLCHPTPKYPHEVPAEYGGNPEATCEAAARLLFMSVKWAKNV 208
Query: 110 APFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE------KARERLPPDDV 163
F +L RDQ LLL+E W+ELF+L AQ+ +P D + L+ K+ V
Sbjct: 209 PAFLSLPFRDQTLLLEEGWRELFVLGAAQFQMPIDPAPLLASAGISSPDKSPSSSSDSTV 268
Query: 164 RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF------TPETPGLVDAQPVEMLQDQ 217
V EI+ +Q+I+A+F+ + D +E C+K +++F E L D + LQDQ
Sbjct: 269 DVVGEIRALQDIIAKFKAMQVDATEYACLKGIVIFKTALSGASENRSLRDVHTIVALQDQ 328
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
AQ LG Y++ Y QP RFG+LLLMLP LR++ TIE LFFK+TIG+IPI+RL+ DMY
Sbjct: 329 AQLTLGKYIQSSYPTQPFRFGKLLLMLPQLRSISGQTIEELFFKKTIGNIPIERLMVDMY 388
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 56/83 (67%)
Query: 278 TMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQST 337
+ + E L D + LQDQAQ LG Y++ Y QP RFG+LLLMLP LR++ T
Sbjct: 306 ALSGASENRSLRDVHTIVALQDQAQLTLGKYIQSSYPTQPFRFGKLLLMLPQLRSISGQT 365
Query: 338 IERLFFKETIGDIPIQRLLGDMY 360
IE LFFK+TIG+IPI+RL+ DMY
Sbjct: 366 IEELFFKKTIGNIPIERLMVDMY 388
>gi|344284423|ref|XP_003413967.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Loxodonta
africana]
Length = 608
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 151/279 (54%), Gaps = 53/279 (18%)
Query: 45 PPTVLYPPSGLKSP--PPPSHHHPSMFLATHQPPPHPGLLQILMSAEKC----------- 91
PP V PP+G SP P P ++ PP H + L++AE C
Sbjct: 335 PPAVTRPPAG-PSPRGPTPVSAARALGPGALTPPGHHHFMASLITAETCAKLEPEDADEH 393
Query: 92 -------------------------QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQE 126
QET+ARLLFMAV+W + L F +L RDQ++LL+E
Sbjct: 394 IDVTSNEPELPSSPYSSPPCSLDSIQETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEE 453
Query: 127 SWKELFLLHLAQWSIPWDLSLLI--------NCEKARERLPPDDVRVNNEIKLIQEILAR 178
+W ELFLL QWS+P D L+ + + R +L + EI +QE ++R
Sbjct: 454 AWSELFLLGAIQWSLPLDSCPLLAPPEAPAASSSQGRLKL------ASMEIHALQETISR 507
Query: 179 FRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFG 238
FR L+ D +E CMKA++LF PET GL D + VE LQDQ+Q +L + + + QP RFG
Sbjct: 508 FRALAVDPTEFACMKALVLFRPETRGLKDPENVEALQDQSQVMLSQHSKAHHPSQPVRFG 567
Query: 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
+LLL+LPSLR + IE LFF++TIG+ P+++LL DM+
Sbjct: 568 KLLLLLPSLRFITSERIELLFFRKTIGNTPMEKLLCDMF 606
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 530 ETRGLKDPENVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFF 589
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 590 RKTIGNTPMEKLLCDMF 606
>gi|260802126|ref|XP_002595944.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
gi|229281196|gb|EEN51956.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
Length = 369
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 110/301 (36%), Positives = 158/301 (52%), Gaps = 38/301 (12%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVK--IPPTVLYPPSGLKSP 58
VQ+ER PR +++ P D P I++ + +P +L+P +
Sbjct: 81 VQNERQPRN---------SAQVRPDQIDMDTD---PAVIATARDSLPAPMLHPQRAVSGS 128
Query: 59 PPPSHHHPSMFL-----ATHQP----------------PPHPGLLQILMSA-EKCQETTA 96
PP H + + A +P P P + + SA E E +A
Sbjct: 129 PPAGHRFMASLMTAETCAKLEPKEDQQYVDVTSVSPDRPEVPEAIHLYPSAQENIYEASA 188
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
RLLFMAV+W + L F L RDQ++LL+E W ELFLL QWS+P+D S L++ + +
Sbjct: 189 RLLFMAVKWAKNLPVFANLPFRDQVILLEEGWGELFLLCAIQWSMPFDTSPLVSPTEHAQ 248
Query: 157 RLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQD 216
+ +++ +QE++ RF+ L D SE C+KAV LF P+T GL D VE LQD
Sbjct: 249 SGGSGATLL--DLRALQEMVDRFKALEVDPSEFACLKAVALFKPDTRGLKDPLQVEKLQD 306
Query: 217 QAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
QAQ +L ++ R + P RFGRLLL LP LR V IE +FF+ TIG+ P++RLL DM
Sbjct: 307 QAQLMLAEHTRSQNRNHPIRFGRLLLTLPCLRHVGPDRIETIFFQRTIGNTPMERLLSDM 366
Query: 277 Y 277
+
Sbjct: 367 F 367
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 51/77 (66%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+T GL D VE LQDQAQ +L ++ R + P RFGRLLL LP LR V IE +FF
Sbjct: 291 DTRGLKDPLQVEKLQDQAQLMLAEHTRSQNRNHPIRFGRLLLTLPCLRHVGPDRIETIFF 350
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++RLL DM+
Sbjct: 351 QRTIGNTPMERLLSDMF 367
>gi|156376476|ref|XP_001630386.1| predicted protein [Nematostella vectensis]
gi|156217406|gb|EDO38323.1| predicted protein [Nematostella vectensis]
Length = 358
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 156/286 (54%), Gaps = 13/286 (4%)
Query: 1 VQHERGPRKPKIHNAH---HQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKS 57
VQHERGPR + +LE + H+P P+G + + G+
Sbjct: 81 VQHERGPRSSTLRKQKMLKEAQERLELVSVAHAPQ--GPSGFINTLLAAEPRMDGCGMAV 138
Query: 58 PPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSK 117
+ P + P + S E E A+LLFM+V+W R + F +L
Sbjct: 139 NDFDLEYKPIRLQSDMSVPMY------YSSPESVCEAAAKLLFMSVKWARNIPSFMSLPF 192
Query: 118 RDQLLLLQESWKELFLLHLAQWSIPWDLS-LLINCEKARERLPPDD-VRVNNEIKLIQEI 175
RDQ++LL+E W+ELFLL +QWS+P +++ +L + PP+ V V ++ +QE
Sbjct: 193 RDQVILLEEGWRELFLLGASQWSMPLEIAPILAASGMHVDNTPPEKIVDVMATVRTLQEA 252
Query: 176 LARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 235
+ +F+ D +E C+KA++LF P GL D + +E QDQAQ +LG+Y+R Y Q
Sbjct: 253 VNKFKAFGVDSTEFACLKAIVLFKPAACGLKDPEQIETTQDQAQLMLGEYIRSTYPTQVA 312
Query: 236 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
RFGRLLL+LP+LR V IE LFFK+TIG +PI+RLL DM+ E+
Sbjct: 313 RFGRLLLLLPALRRVSALAIEELFFKKTIGTVPIERLLSDMFKNEQ 358
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 56/78 (71%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D + +E QDQAQ +LG+Y+R Y Q RFGRLLL+LP+LR V IE LFFK+T
Sbjct: 281 GLKDPEQIETTQDQAQLMLGEYIRSTYPTQVARFGRLLLLLPALRRVSALAIEELFFKKT 340
Query: 347 IGDIPIQRLLGDMYTMEK 364
IG +PI+RLL DM+ E+
Sbjct: 341 IGTVPIERLLSDMFKNEQ 358
>gi|348505631|ref|XP_003440364.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 421
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 122/189 (64%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E ET+ARLLFM+V+W + L F L RDQ++LL+E+W E+FLL QWS+P D L
Sbjct: 231 ENVYETSARLLFMSVKWAKNLPVFAHLPFRDQVILLEEAWSEMFLLCAIQWSLPMDSCPL 290
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + + ++++++E+ +RF+ L+ D +E C+KA++LF PE L D
Sbjct: 291 LSLPDLSIPQQANISLLTADLQILEEVFSRFKALTVDPTEFACLKAIVLFKPEVRNLKDP 350
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+ VE LQDQ+Q +LG ++ Y Q RFGRL+L+LPSLR V I +LFF+ TIG P
Sbjct: 351 EQVENLQDQSQVLLGQHIHSVYPNQGARFGRLILLLPSLRFVNSEKIAKLFFQRTIGSTP 410
Query: 269 IQRLLGDMY 277
+++LL DM+
Sbjct: 411 MEKLLCDMF 419
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E L D + VE LQDQ+Q +LG ++ Y Q RFGRL+L+LPSLR V I +LFF
Sbjct: 343 EVRNLKDPEQVENLQDQSQVLLGQHIHSVYPNQGARFGRLILLLPSLRFVNSEKIAKLFF 402
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG P+++LL DM+
Sbjct: 403 QRTIGSTPMEKLLCDMF 419
>gi|27371232|gb|AAH41421.1| NR2E3 protein [Homo sapiens]
Length = 322
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 127/191 (66%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 134 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 193
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E +++QE ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 194 EASAAGGAQGRL----TLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLK 249
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 250 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGN 309
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 310 TPMEKLLCDMF 320
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 244 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 303
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 304 RKTIGNTPMEKLLCDMF 320
>gi|410960926|ref|XP_003987038.1| PREDICTED: photoreceptor-specific nuclear receptor [Felis catus]
Length = 411
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 87/187 (46%), Positives = 124/187 (66%), Gaps = 2/187 (1%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 223 ETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAAP 282
Query: 153 KARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP 210
+A + E +++QE ++RFR L+ D +E CMKA++LF PET GL D +
Sbjct: 283 EASAAGSSQGRLALASAESRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEH 342
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF++TIG+ P++
Sbjct: 343 VEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIGNTPME 402
Query: 271 RLLGDMY 277
+LL DM+
Sbjct: 403 KLLCDMF 409
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF
Sbjct: 333 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFF 392
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 393 RKTIGNTPMEKLLCDMF 409
>gi|431893708|gb|ELK03529.1| Photoreceptor-specific nuclear receptor [Pteropus alecto]
Length = 417
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 140/233 (60%), Gaps = 4/233 (1%)
Query: 49 LYPPSGLKSPPPPSHHHPSMFLATHQP--PPHPGLLQILMSAEKCQETTARLLFMAVRWV 106
L P G + PPP ++ + ++ P P P + ET+ARLLFMAV+W
Sbjct: 183 LEPEDGADAEPPPPTADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWA 242
Query: 107 RCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD--VR 164
+ L F L RDQ++LL+E+W ELFLL QWS+P D L+ +A
Sbjct: 243 KNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGSSQGRLAL 302
Query: 165 VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGD 224
+ E++++QE + RFR L+ D +E CMKA++LF PET GL D + VE LQDQ+Q +L
Sbjct: 303 ASAEMRILQETILRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQ 362
Query: 225 YVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
+ + + QP RFG+LLL+LPSLR + +E LFF++TIG+ P+++LL DM+
Sbjct: 363 HSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIGNTPMEKLLCDMF 415
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF
Sbjct: 339 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFF 398
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 399 RKTIGNTPMEKLLCDMF 415
>gi|301773902|ref|XP_002922374.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Ailuropoda
melanoleuca]
Length = 483
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 124/188 (65%), Gaps = 2/188 (1%)
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC 151
QET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 294 QETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAA 353
Query: 152 EKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+A + E +++QE ++RFR L+ D +E C+KA++LF PET GL +
Sbjct: 354 PEASAAGSSQGQLALASAESRILQETISRFRALAVDATEFACLKALVLFKPETRGLKGPE 413
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF++TIG+ P+
Sbjct: 414 HVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIGNTPM 473
Query: 270 QRLLGDMY 277
++LL DM+
Sbjct: 474 EKLLCDMF 481
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF
Sbjct: 405 ETRGLKGPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFF 464
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 465 RKTIGNTPMEKLLCDMF 481
>gi|7657395|ref|NP_055064.1| photoreceptor-specific nuclear receptor isoform b [Homo sapiens]
gi|8928275|sp|Q9Y5X4.1|NR2E3_HUMAN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|4726075|gb|AAD28301.1|AF121129_1 photoreceptor-specific nuclear receptor [Homo sapiens]
gi|7329721|emb|CAB82769.1| photoreceptor-specific nuclear receptor [Homo sapiens]
gi|119598282|gb|EAW77876.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a
[Homo sapiens]
gi|216409728|dbj|BAH02301.1| photoreceptor-specific nuclear receptor [Homo sapiens]
Length = 410
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 127/191 (66%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 222 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 281
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E +++QE ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 282 EASAAGGAQGRL----TLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLK 337
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 338 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGN 397
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 398 TPMEKLLCDMF 408
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 332 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 391
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 392 RKTIGNTPMEKLLCDMF 408
>gi|263506139|sp|Q9TTF0.2|NR2E3_BOVIN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
Length = 411
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 161/302 (53%), Gaps = 27/302 (8%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPH-NPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPP 59
VQ+ER PR +S+ EP P +P L G SS P G ++
Sbjct: 110 VQNERQPRSTAQVRMDSVESETEPRLQPLATPPALA--GPSSRGPTPVSAARALGPQALM 167
Query: 60 PPSHHHPSMFLATHQP----PPHPGLLQILMSA------------------EKCQETTAR 97
PP HHH L T + P I +++ + ET+AR
Sbjct: 168 PPGHHHFMASLITAETCTKLEPEDADENIDVTSNDPEFPSSPYSSSSPCALDSIHETSAR 227
Query: 98 LLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARER 157
LLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+ +A
Sbjct: 228 LLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAG 287
Query: 158 LPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQ 215
V + E +++QE ++RFR L+ D +E CMKA++LF PET GL D + VE LQ
Sbjct: 288 GSSQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQ 347
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
DQ+Q +L + + + Q RFG+LLL+LPSLR + +E LFF++TIG+ P+++LL D
Sbjct: 348 DQSQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLCD 407
Query: 276 MY 277
M+
Sbjct: 408 MF 409
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEML 297
GRL+L R + Q TI R F+ D P + + K ET GL D + VE L
Sbjct: 292 GRLVLASAETR-ILQETISR--FRALAVD-PTEFACMKALVLFKP-ETRGLKDPEHVEAL 346
Query: 298 QDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLG 357
QDQ+Q +L + + + Q RFG+LLL+LPSLR + +E LFF++TIG+ P+++LL
Sbjct: 347 QDQSQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLC 406
Query: 358 DMY 360
DM+
Sbjct: 407 DMF 409
>gi|432111648|gb|ELK34747.1| Photoreceptor-specific nuclear receptor [Myotis davidii]
Length = 404
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 124/187 (66%), Gaps = 2/187 (1%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 216 ETSARLLFMAVKWAKSLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 275
Query: 153 KARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP 210
+A + E++ +QE ++RFR L+ D +E CMKA++LF PET GL D +
Sbjct: 276 EASAAGSSQGRLALASAEMRFLQETISRFRVLAVDPTEFACMKALVLFKPETRGLKDPEH 335
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+ P++
Sbjct: 336 VEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKTIGNTPME 395
Query: 271 RLLGDMY 277
+LL DM+
Sbjct: 396 KLLCDMF 402
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 253 STIERLFFKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGD 307
++ E F +ETI + + + K+ ET GL D + VE LQDQ+Q +L
Sbjct: 290 ASAEMRFLQETISRFRVLAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQ 349
Query: 308 YVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 360
+ + + QP RFG+LLL+LPSLR + IE LFF++TIG+ P+++LL DM+
Sbjct: 350 HSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFRKTIGNTPMEKLLCDMF 402
>gi|281353714|gb|EFB29298.1| hypothetical protein PANDA_011329 [Ailuropoda melanoleuca]
Length = 391
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/188 (45%), Positives = 124/188 (65%), Gaps = 2/188 (1%)
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC 151
QET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 202 QETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAA 261
Query: 152 EKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+A + E +++QE ++RFR L+ D +E C+KA++LF PET GL +
Sbjct: 262 PEASAAGSSQGQLALASAESRILQETISRFRALAVDATEFACLKALVLFKPETRGLKGPE 321
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF++TIG+ P+
Sbjct: 322 HVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIGNTPM 381
Query: 270 QRLLGDMY 277
++LL DM+
Sbjct: 382 EKLLCDMF 389
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF
Sbjct: 313 ETRGLKGPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFF 372
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 373 RKTIGNTPMEKLLCDMF 389
>gi|395822830|ref|XP_003784710.1| PREDICTED: photoreceptor-specific nuclear receptor [Otolemur
garnettii]
Length = 693
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/196 (44%), Positives = 128/196 (65%), Gaps = 18/196 (9%)
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC 151
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 504 HETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDGCPLL-- 561
Query: 152 EKARERLPPDDVRVNN----------EIKLIQEILARFRQLSPDGSECGCMKAVILFTPE 201
+PP+ + E+++++E ++RFR L+ D +E CMKA++LF PE
Sbjct: 562 ------VPPEASAASGSQGRHTLASMEMRILRETISRFRALAVDPTEFACMKALVLFKPE 615
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 261
T GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF+
Sbjct: 616 TRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFFR 675
Query: 262 ETIGDIPIQRLLGDMY 277
+TIG+ P+++LL DM+
Sbjct: 676 KTIGNTPMEKLLCDMF 691
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 615 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERIELLFF 674
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 675 RKTIGNTPMEKLLCDMF 691
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 151/286 (52%), Gaps = 41/286 (14%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPP 60
VQHER PR +I + ++ N PD +P S + P +P +G ++ P
Sbjct: 71 VQHERAPRSAQILPRATSTTTID-LNKEDRPDGVPTQ--RSTDMCPGWTFP-TGYQTAPQ 126
Query: 61 PSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQ 120
S + E+ +LL+M+V W R + F L RDQ
Sbjct: 127 DSIY----------------------------ESAVQLLYMSVTWARNIPTFLDLPFRDQ 158
Query: 121 LLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNN--EIKLIQEILAR 178
+LL+E W ELF+L AQ+S+P D+ L++ + P D V +I+L+Q I+ R
Sbjct: 159 AILLEEGWSELFVLSSAQFSLPLDMGPLLSAAGLQVDKAPTDRIVAGMADIRLLQNIVTR 218
Query: 179 FRQLSPDGSECGCMKAVILFTPETP-------GLVDAQPVEMLQDQAQCILGDYVRGRYS 231
F++L D +E C+KA++LF P P GL Q VE LQDQAQ +LG+Y R +Y
Sbjct: 219 FKRLQIDSTEYACLKAIVLFKPVLPFFPVNLRGLRAPQLVERLQDQAQSMLGEYCRSQYP 278
Query: 232 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
Q RFG+LLLMLPSL+ V IE LFF+ T+ ++PI+R+L DM+
Sbjct: 279 DQQVRFGKLLLMLPSLKTVSPKMIEDLFFRGTLDNVPIERMLCDMF 324
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 53/74 (71%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL Q VE LQDQAQ +LG+Y R +Y Q RFG+LLLMLPSL+ V IE LFF+ T
Sbjct: 251 GLRAPQLVERLQDQAQSMLGEYCRSQYPDQQVRFGKLLLMLPSLKTVSPKMIEDLFFRGT 310
Query: 347 IGDIPIQRLLGDMY 360
+ ++PI+R+L DM+
Sbjct: 311 LDNVPIERMLCDMF 324
>gi|6681852|gb|AAF15392.2|AF107729_1 paraneoplastic retinopathy associated protein De [Bos taurus]
Length = 427
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 161/302 (53%), Gaps = 27/302 (8%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPH-NPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPP 59
VQ+ER PR +S+ EP P +P L G SS P G ++
Sbjct: 126 VQNERQPRSTAQVRMDSVESETEPRLQPLATPPALA--GPSSRGPTPVSAARALGPQALM 183
Query: 60 PPSHHHPSMFLATHQP----PPHPGLLQILMSA------------------EKCQETTAR 97
PP HHH L T + P I +++ + ET+AR
Sbjct: 184 PPGHHHFMASLITAETCTKLEPEDADENIDVTSNDPEFPSSPYSSSSPCALDSIHETSAR 243
Query: 98 LLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARER 157
LLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+ +A
Sbjct: 244 LLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAG 303
Query: 158 LPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQ 215
V + E +++QE ++RFR L+ D +E CMKA++LF PET GL D + VE LQ
Sbjct: 304 GSSQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQ 363
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
DQ+Q +L + + + Q RFG+LLL+LPSLR + +E LFF++TIG+ P+++LL D
Sbjct: 364 DQSQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLCD 423
Query: 276 MY 277
M+
Sbjct: 424 MF 425
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEML 297
GRL+L R + Q TI R F+ D P + + K ET GL D + VE L
Sbjct: 308 GRLVLASAETR-ILQETISR--FRALAVD-PTEFACMKALVLFKP-ETRGLKDPEHVEAL 362
Query: 298 QDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLG 357
QDQ+Q +L + + + Q RFG+LLL+LPSLR + +E LFF++TIG+ P+++LL
Sbjct: 363 QDQSQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLC 422
Query: 358 DMY 360
DM+
Sbjct: 423 DMF 425
>gi|355692849|gb|EHH27452.1| Retina-specific nuclear receptor, partial [Macaca mulatta]
Length = 411
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 127/191 (66%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 223 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 282
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E ++++E ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 283 EASAAGGAQGRL----TLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLK 338
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 339 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGN 398
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 399 TPMEKLLCDMF 409
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 333 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 392
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 393 RKTIGNTPMEKLLCDMF 409
>gi|109081780|ref|XP_001089693.1| PREDICTED: photoreceptor-specific nuclear receptor [Macaca mulatta]
Length = 448
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 127/191 (66%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI--- 149
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 260 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 319
Query: 150 ---NCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E ++++E ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 320 EASTAGGAQGRL----TLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLK 375
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 376 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGN 435
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 436 TPMEKLLCDMF 446
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 370 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 429
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 430 RKTIGNTPMEKLLCDMF 446
>gi|296213607|ref|XP_002753344.1| PREDICTED: photoreceptor-specific nuclear receptor [Callithrix
jacchus]
Length = 368
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/187 (47%), Positives = 128/187 (68%), Gaps = 2/187 (1%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS-LLINC 151
ET+ARLLFM+V+W + L F +L RDQ++LL+E+W ELFLL QWS+P D LL
Sbjct: 180 ETSARLLFMSVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 239
Query: 152 EKARERLPPDDVRVNN-EIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP 210
E + P + + + E +++QE ++RFR L+ D +E CMKA++LF PET GL D +
Sbjct: 240 EASAAGGAPGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEH 299
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+ P++
Sbjct: 300 VEALQDQSQVMLSQHSKAHHPSQPMRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPME 359
Query: 271 RLLGDMY 277
+LL DM+
Sbjct: 360 KLLCDMF 366
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 290 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPMRFGKLLLLLPSLRFITAERIELLFF 349
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 350 RKTIGNTPMEKLLCDMF 366
>gi|397495510|ref|XP_003818595.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 2 [Pan
paniscus]
Length = 322
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 127/191 (66%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 134 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 193
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E ++++E ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 194 EASAAGGAQGRL----TLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLK 249
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 250 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGN 309
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 310 TPMEKLLCDMF 320
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 244 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 303
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 304 RKTIGNTPMEKLLCDMF 320
>gi|403276151|ref|XP_003929774.1| PREDICTED: photoreceptor-specific nuclear receptor [Saimiri
boliviensis boliviensis]
Length = 552
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 127/191 (66%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFM+V+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 364 ETSARLLFMSVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 423
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E +++QE ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 424 EASAAGGAQGRL----TLASMETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLK 479
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 480 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGN 539
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 540 TPMEKLLCDMF 550
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 474 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 533
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 534 RKTIGNTPMEKLLCDMF 550
>gi|402874751|ref|XP_003901191.1| PREDICTED: photoreceptor-specific nuclear receptor [Papio anubis]
Length = 445
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 127/191 (66%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 257 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 316
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E ++++E ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 317 EASAAGGAQGRL----TLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLK 372
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 373 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGN 432
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 433 TPMEKLLCDMF 443
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 367 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 426
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 427 RKTIGNTPMEKLLCDMF 443
>gi|114657922|ref|XP_001175020.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
troglodytes]
Length = 322
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 127/191 (66%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 134 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 193
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E ++++E ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 194 EASAAGGAQGRL----TLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLK 249
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 250 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGN 309
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 310 TPMEKLLCDMF 320
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 244 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 303
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 304 RKTIGNTPMEKLLCDMF 320
>gi|426379592|ref|XP_004056476.1| PREDICTED: photoreceptor-specific nuclear receptor [Gorilla gorilla
gorilla]
Length = 402
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 127/191 (66%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 214 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 273
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E ++++E ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 274 EASAAGGAQGRL----TLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLK 329
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 330 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGN 389
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 390 TPMEKLLCDMF 400
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 324 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 383
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 384 RKTIGNTPMEKLLCDMF 400
>gi|397495508|ref|XP_003818594.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
paniscus]
Length = 402
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 127/191 (66%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 214 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 273
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E ++++E ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 274 EASAAGGAQGRL----TLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLK 329
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 330 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGN 389
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 390 TPMEKLLCDMF 400
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 324 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 383
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 384 RKTIGNTPMEKLLCDMF 400
>gi|114657918|ref|XP_001175025.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 3 [Pan
troglodytes]
Length = 402
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 127/191 (66%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 214 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 273
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E ++++E ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 274 EASAAGGAQGRL----TLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLK 329
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 330 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGN 389
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 390 TPMEKLLCDMF 400
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 324 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 383
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 384 RKTIGNTPMEKLLCDMF 400
>gi|405978560|gb|EKC42940.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 380
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 150/290 (51%), Gaps = 16/290 (5%)
Query: 1 VQHERGPRKPKIHN---AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKS 57
VQHERGPR I + ++++ +P PP S + P G +
Sbjct: 89 VQHERGPRNSTIRRQVAMYLKETRDYGAFVAQTP-FRPPYLPSCYGLDPMANGVDLGTVT 147
Query: 58 PPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSK 117
PP P P + PH + + E E ARLLFM+V+W + + F L
Sbjct: 148 PPSPVS--PGILCQPTPKYPHEIMQAYSSNPEAMCEVAARLLFMSVKWAKNVPAFLGLPF 205
Query: 118 RDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD--VRVNNEIKLIQEI 175
RDQ++LL+E W+ELF+L AQ+ +P + L+ P + V EI+ +QEI
Sbjct: 206 RDQVMLLEEGWRELFVLGAAQFQMPVEAGPLLAVAGLNTEDAPAEKVVSFMTEIRALQEI 265
Query: 176 LARFRQLSPDGSECGCMKAVILF--------TPETPGLVDAQPVEMLQDQAQCILGDYVR 227
+++F+ L D +E C+K ++LF + L D V LQDQAQ L Y++
Sbjct: 266 ISKFKSLQVDPTEFACLKGIVLFKTAFGNSQNSDEKSLQDIHTVAGLQDQAQLTLSKYIQ 325
Query: 228 GRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
Y QP RFG+LLL +P+L+ V +TI LFF++TIG+IPI+RLL DM+
Sbjct: 326 ATYPTQPFRFGKLLLSIPTLKTVCGNTIAELFFRKTIGNIPIERLLIDMF 375
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%)
Query: 272 LLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLR 331
L + ++ + L D V LQDQAQ L Y++ Y QP RFG+LLL +P+L+
Sbjct: 287 LFKTAFGNSQNSDEKSLQDIHTVAGLQDQAQLTLSKYIQATYPTQPFRFGKLLLSIPTLK 346
Query: 332 AVRQSTIERLFFKETIGDIPIQRLLGDMY 360
V +TI LFF++TIG+IPI+RLL DM+
Sbjct: 347 TVCGNTIAELFFRKTIGNIPIERLLIDMF 375
>gi|326926346|ref|XP_003209363.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor-like [Meleagris gallopavo]
Length = 395
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 132/206 (64%), Gaps = 10/206 (4%)
Query: 73 HQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELF 132
+Q P+P E ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELF
Sbjct: 197 YQVAPYPA-----AGPENVYETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELF 251
Query: 133 LLHLAQWSIPWD-LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGC 191
LL QWS+P + LL E + +L P V +++ +QE L RF+ L+ D +E C
Sbjct: 252 LLCAIQWSMPLESCPLLAVPEPSPGKLLPAAV----DVRALQETLGRFKALAVDPTEFAC 307
Query: 192 MKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVR 251
MKAV+LF PET GL D + VE LQDQ+Q +LG + R Y QP RFG+LLL+LP+LR +
Sbjct: 308 MKAVVLFKPETRGLKDPEQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFLS 367
Query: 252 QSTIERLFFKETIGDIPIQRLLGDMY 277
+E LFF+ TIG+ P+++LL DM+
Sbjct: 368 SERVELLFFRRTIGNTPMEKLLCDMF 393
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +LG + R Y QP RFG+LLL+LP+LR + +E LFF
Sbjct: 317 ETRGLKDPEQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFLSSERVELLFF 376
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P+++LL DM+
Sbjct: 377 RRTIGNTPMEKLLCDMF 393
>gi|45382987|ref|NP_989925.1| photoreceptor-specific nuclear receptor [Gallus gallus]
gi|15777197|gb|AAL05940.1| photoreceptor-specific nuclear receptor [Gallus gallus]
Length = 406
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/190 (48%), Positives = 127/190 (66%), Gaps = 5/190 (2%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD-LSL 147
E ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P + L
Sbjct: 219 ENVYETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPLESCPL 278
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
L E + +L P V +++ +QE L RF+ L+ D +E CMKAV+LF PET GL D
Sbjct: 279 LAVPEPSPGKLLPAAV----DVRALQETLGRFKALAVDPTEFACMKAVVLFKPETRGLKD 334
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDI 267
+ VE LQDQ+Q +LG + R Y QP RFG+LLL+LP+LR + +E LFF+ TIG+
Sbjct: 335 PEQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFLSSERVELLFFRRTIGNT 394
Query: 268 PIQRLLGDMY 277
P+++LL DM+
Sbjct: 395 PMEKLLCDMF 404
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +LG + R Y QP RFG+LLL+LP+LR + +E LFF
Sbjct: 328 ETRGLKDPEQVENLQDQSQVMLGQHNRSHYPGQPVRFGKLLLLLPALRFLSSERVELLFF 387
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P+++LL DM+
Sbjct: 388 RRTIGNTPMEKLLCDMF 404
>gi|297697018|ref|XP_002825669.1| PREDICTED: photoreceptor-specific nuclear receptor [Pongo abelii]
Length = 614
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 124/195 (63%), Gaps = 18/195 (9%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 426 ETSARLLFMAVKWAKNLPVFSGLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLL--- 482
Query: 153 KARERLPPDDVRVNN----------EIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
PP+ E ++++E ++RFR L+ D +E CMKA++LF PET
Sbjct: 483 -----APPEASAAGGAQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPET 537
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++
Sbjct: 538 RGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRK 597
Query: 263 TIGDIPIQRLLGDMY 277
TIG+ P+++LL DM+
Sbjct: 598 TIGNTPMEKLLCDMF 612
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 536 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 595
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 596 RKTIGNTPMEKLLCDMF 612
>gi|432850560|ref|XP_004066811.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Oryzias latipes]
Length = 385
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 118/180 (65%)
Query: 98 LLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARER 157
LLFM+V+W + L F L RDQ++LL+E+W ELFLL QWS+P D L++
Sbjct: 204 LLFMSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPG 263
Query: 158 LPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
+ +++L+QE +RF+ L+ D +E C+KA++LF PET GL D + VE LQDQ
Sbjct: 264 MQGKTSYTGLDLRLLQEAFSRFKALAVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQ 323
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
+Q +LG ++R Y QP RFG+LLL+LPSLR V IE LFF TIG+ P+++LL DM+
Sbjct: 324 SQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFFHRTIGNTPMEKLLCDMF 383
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 102/155 (65%)
Query: 119 DQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILAR 178
++++LL+E+W ELFLL QWS+P D L++ + +++L+QE +R
Sbjct: 49 EKVILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPGMQGKTSYTGLDLRLLQEAFSR 108
Query: 179 FRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFG 238
F+ L+ D +E C+KA++LF PET GL D + VE LQDQ+Q +LG ++R Y QP RFG
Sbjct: 109 FKALAVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQSQVMLGQHIRSHYPSQPARFG 168
Query: 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLL 273
+LLL+LPSLR V IE LFF TIG+ P+++LL
Sbjct: 169 KLLLLLPSLRFVNSERIELLFFHRTIGNTPMEKLL 203
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +LG ++R Y QP RFG+LLL+LPSLR V IE LFF
Sbjct: 307 ETRGLKDPEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFF 366
Query: 344 KETIGDIPIQRLLGDMY 360
TIG+ P+++LL DM+
Sbjct: 367 HRTIGNTPMEKLLCDMF 383
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 52/73 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +LG ++R Y QP RFG+LLL+LPSLR V IE LFF
Sbjct: 131 ETRGLKDPEQVENLQDQSQVMLGQHIRSHYPSQPARFGKLLLLLPSLRFVNSERIELLFF 190
Query: 344 KETIGDIPIQRLL 356
TIG+ P+++LL
Sbjct: 191 HRTIGNTPMEKLL 203
>gi|116517488|gb|ABJ99096.1| nuclear receptor subfamily 2 group E member 3 [Danio rerio]
Length = 348
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 121/189 (64%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E ET+ARLLFM+V+W + L F L RDQ++LL+E+W ELFLL QWS+P D L
Sbjct: 158 ESVYETSARLLFMSVKWAKNLPVFSHLPFRDQVILLEEAWSELFLLCAIQWSLPLDNCPL 217
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ ++++++QE+ +RF+ L D +E C+KA++LF PET GL D
Sbjct: 218 LSLPDLSPTGQGKGSPSASDVRVLQEVFSRFKPLQVDPTEFACLKAIVLFKPETRGLKDP 277
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+ VE LQDQ+Q +L ++ Y Q RFGRLLL+LPSL V IE LFF+ TIG+ P
Sbjct: 278 EQVENLQDQSQVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRTIGNTP 337
Query: 269 IQRLLGDMY 277
+++LL DM+
Sbjct: 338 MEKLLCDMF 346
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 52/77 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L ++ Y Q RFGRLLL+LPSL V IE LFF
Sbjct: 270 ETRGLKDPEQVENLQDQSQVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFF 329
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P+++LL DM+
Sbjct: 330 QRTIGNTPMEKLLCDMF 346
>gi|55925261|ref|NP_001007369.1| photoreceptor-specific nuclear receptor [Danio rerio]
gi|55250124|gb|AAH85568.1| Zgc:103631 [Danio rerio]
gi|182889208|gb|AAI64789.1| Zgc:103631 protein [Danio rerio]
Length = 419
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 121/189 (64%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E ET+ARLLFM+V+W + L F L RDQ++LL+E+W ELFLL QWS+P D L
Sbjct: 229 ESVYETSARLLFMSVKWAKNLPVFSHLPFRDQVILLEEAWSELFLLCAIQWSLPLDNCPL 288
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ ++++++QE+ +RF+ L D +E C+KA++LF PET GL D
Sbjct: 289 LSLPDLSPTGQGKGSPSASDVRVLQEVFSRFKPLQVDPTEFACLKAIVLFKPETRGLKDP 348
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+ VE LQDQ+Q +L ++ Y Q RFGRLLL+LPSL V IE LFF+ TIG+ P
Sbjct: 349 EQVENLQDQSQVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRTIGNTP 408
Query: 269 IQRLLGDMY 277
+++LL DM+
Sbjct: 409 MEKLLCDMF 417
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 52/77 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L ++ Y Q RFGRLLL+LPSL V IE LFF
Sbjct: 341 ETRGLKDPEQVENLQDQSQVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFF 400
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P+++LL DM+
Sbjct: 401 QRTIGNTPMEKLLCDMF 417
>gi|118777094|ref|XP_307453.3| Anopheles gambiae str. PEST AGAP012600-PA [Anopheles gambiae str.
PEST]
gi|116133146|gb|EAA03055.4| AGAP012600-PA [Anopheles gambiae str. PEST]
Length = 202
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 125/195 (64%), Gaps = 6/195 (3%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F +L+ RDQ++LL+ESW ELFLL+ QW +P D
Sbjct: 6 ETIYETSARLLFMAVKWAKNLPSFASLTFRDQVILLEESWAELFLLNAIQWCMPIDTTAC 65
Query: 145 --LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
SL +C A +VN+ ++++ + L RF+ + D +E CMKA++LF E
Sbjct: 66 TLFSLNEHCNSANNSGFFKPGQVNDNLRILNDTLCRFKSVLVDPAEFACMKAIVLFRSEA 125
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQDQAQ +L + R ++ Q RFGRLLLMLP LRAV IE ++F++
Sbjct: 126 RGLKDPVQIENLQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRAVNSHKIESIYFQK 185
Query: 263 TIGDIPIQRLLGDMY 277
TIG+ P++++L DMY
Sbjct: 186 TIGNTPMEKVLCDMY 200
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL D +E LQDQAQ +L + R ++ Q RFGRLLLMLP LRAV IE ++F
Sbjct: 124 EARGLKDPVQIENLQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRAVNSHKIESIYF 183
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P++++L DMY
Sbjct: 184 QKTIGNTPMEKVLCDMY 200
>gi|149692277|ref|XP_001495004.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Equus
caballus]
Length = 480
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 123/187 (65%), Gaps = 2/187 (1%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 292 ETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 351
Query: 153 KARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP 210
+A + E +++QE ++RFR L+ D +E CMKA++LF PET GL D +
Sbjct: 352 EASAAGSSQGRLALASAETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEH 411
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
VE LQDQ+Q +L + + + QP RFG+LLL+L SLR + +E LFF++TIG+ P++
Sbjct: 412 VEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLSSLRFITSERVELLFFRKTIGNTPME 471
Query: 271 RLLGDMY 277
+LL DM+
Sbjct: 472 KLLCDMF 478
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+L SLR + +E LFF
Sbjct: 402 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLSSLRFITSERVELLFF 461
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 462 RKTIGNTPMEKLLCDMF 478
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 120/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 194 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 253
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFTP+
Sbjct: 254 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTPDA 313
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 314 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 373
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 374 LVGKTPIETLIRDMLLSGSSFNWP 397
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 315 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 374
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 375 VGKTPIETLIRDMLLSGSSFN 395
>gi|148694040|gb|EDL25987.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus
musculus]
gi|148694041|gb|EDL25988.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus
musculus]
Length = 322
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 125/191 (65%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S + ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D
Sbjct: 130 SLDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSC 189
Query: 147 LLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
L+ +A + E + +QE ++RFR L+ D +E C+KA++LF PET GL
Sbjct: 190 PLLAPPEASGSSQGRLALASAETRFLQETISRFRALAVDPTEFACLKALVLFKPETRGLK 249
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 250 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKTIGN 309
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 310 TPMEKLLCDMF 320
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 244 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFF 303
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 304 RKTIGNTPMEKLLCDMF 320
>gi|118343705|ref|NP_001071673.1| nuclear receptor [Ciona intestinalis]
gi|70569140|dbj|BAE06356.1| nuclear receptor [Ciona intestinalis]
Length = 416
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/270 (35%), Positives = 142/270 (52%), Gaps = 10/270 (3%)
Query: 18 QDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPPPSHHHPSMFLATHQPPP 77
Q ++ P PH + NG+ S P + SG S + +P+ A P P
Sbjct: 150 QRGRMPPSQPHTTGQYAITNGVESNFGPGYM----SGYISMLLRAEPYPTSRFALQCPVP 205
Query: 78 HPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLA 137
+ +M + E ARLLF AV W R + F L DQ+ +L+ W ELF+L+ A
Sbjct: 206 NQ-----IMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVAMLKWVWSELFVLNAA 260
Query: 138 QWSIPWDLSLLINCEKARERLPPDDVRV-NNEIKLIQEILARFRQLSPDGSECGCMKAVI 196
Q +P ++ L+ + D V + I++ QE + R + L D +E C+KA++
Sbjct: 261 QSHMPLHVAPLLAAAGLHTSMSADRVMTFMDHIRIFQEQVERLKSLHVDSAEYSCLKAIV 320
Query: 197 LFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIE 256
LFT ++ GL D +E +Q+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE
Sbjct: 321 LFTADSHGLSDMTHIESVQEKSQCALEEYVRHQYPNQPSRFGKLLLRLPSLRTVSASAIE 380
Query: 257 RLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
+LFF +G PI+ L+ DM SY P
Sbjct: 381 QLFFVRLVGKTPIETLIRDMLLSGSSYGWP 410
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 56/84 (66%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL D +E +Q+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 325 DSHGLSDMTHIESVQEKSQCALEEYVRHQYPNQPSRFGKLLLRLPSLRTVSASAIEQLFF 384
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM SYG
Sbjct: 385 VRLVGKTPIETLIRDMLLSGSSYG 408
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 120/203 (59%), Gaps = 1/203 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 210 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 269
Query: 145 LSLLINCEKARERLPPDDV-RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+++L + D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 270 VAVLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDAC 329
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 263
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 330 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 389
Query: 264 IGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 390 VGKTPIETLIRDMLLSGSSFNWP 412
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 330 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 389
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 390 VGKTPIETLIRDMLLSGSSF 409
>gi|405966252|gb|EKC31559.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 622
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 120/187 (64%), Gaps = 3/187 (1%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
ET A+LLFM+V+W + + F L RDQ +LL+ESW ELF+L AQWS+ D+ L++
Sbjct: 434 ETAAKLLFMSVKWAKNIPSFLQLPFRDQAILLEESWCELFVLSAAQWSLNIDIGFLLSAN 493
Query: 153 KARERLPP--DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP 210
P ++ +++ +Q+I+ R + D +E C+KA++LF P+ GL D+
Sbjct: 494 GYTLDGPKMEKTTLMSLQLRQLQDIIYRLNGIRLDSTEYACLKALLLFKPDVKGLRDSLQ 553
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
VE LQDQAQ +L DYV + + TRFGRLLL LP+LR V +E +FF+ TIG+IPI+
Sbjct: 554 VEALQDQAQIMLYDYVSNQKLLK-TRFGRLLLQLPALRNVSSRAVEDIFFRRTIGNIPIE 612
Query: 271 RLLGDMY 277
R+L DM+
Sbjct: 613 RILCDMF 619
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D+ VE LQDQAQ +L DYV + + TRFGRLLL LP+LR V +E +FF
Sbjct: 544 DVKGLRDSLQVEALQDQAQIMLYDYVSNQKLLK-TRFGRLLLQLPALRNVSSRAVEDIFF 602
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+IPI+R+L DM+
Sbjct: 603 RRTIGNIPIERILCDMF 619
>gi|328792134|ref|XP_396999.4| PREDICTED: photoreceptor-specific nuclear receptor [Apis mellifera]
gi|380028656|ref|XP_003698008.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Apis
florea]
Length = 538
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 131/222 (59%), Gaps = 17/222 (7%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
T PP P L SAE ET+ARLLFMAV+W + L F +L RDQ++LL+E+W EL
Sbjct: 316 TQIPPVIPSLYSP-ASAETVYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSEL 374
Query: 132 FLLHLAQWSIPWDLSLLIN-CEKARERLPP---------------DDVRVNNEIKLIQEI 175
FLL+ QW +P + S L N E L P +V +++ + +
Sbjct: 375 FLLNAVQWCLPLESSPLFNSAELTALTLSPHPHPHSGIHMQTTTGKPSQVAADVRHLHDT 434
Query: 176 LARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 235
L R++ + D +E CMKA++LF PET GL D+ +E LQDQAQ +LG + R + P
Sbjct: 435 LQRYKAVMVDPAEFACMKAIVLFRPETRGLKDSSQIENLQDQAQVMLGQHARAQQPGSPA 494
Query: 236 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
RFGRLLL+LP LR V S +E ++F TIG+ P++++L DMY
Sbjct: 495 RFGRLLLLLPLLRTVPASRVELIYFHRTIGNTPMEKVLCDMY 536
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D+ +E LQDQAQ +LG + R + P RFGRLLL+LP LR V S +E ++F
Sbjct: 460 ETRGLKDSSQIENLQDQAQVMLGQHARAQQPGSPARFGRLLLLLPLLRTVPASRVELIYF 519
Query: 344 KETIGDIPIQRLLGDMY 360
TIG+ P++++L DMY
Sbjct: 520 HRTIGNTPMEKVLCDMY 536
>gi|340709633|ref|XP_003393408.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
terrestris]
gi|350422440|ref|XP_003493165.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
impatiens]
Length = 540
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 131/222 (59%), Gaps = 17/222 (7%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
T PP P L SAE ET+ARLLFMAV+W + L F +L RDQ++LL+E+W EL
Sbjct: 318 TQIPPVIPSLYSP-ASAETVYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSEL 376
Query: 132 FLLHLAQWSIPWDLSLLIN-CEKARERLPP---------------DDVRVNNEIKLIQEI 175
FLL+ QW +P + S L N E L P +V +++ + +
Sbjct: 377 FLLNAVQWCLPLESSPLFNSAELTALTLSPHPHPHSGIHMQTTTGKPSQVAADVRHLHDT 436
Query: 176 LARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 235
L R++ + D +E CMKA++LF PET GL D+ +E LQDQAQ +LG + R + P
Sbjct: 437 LQRYKAVMVDPAEFACMKAIVLFRPETRGLKDSSQIENLQDQAQVMLGQHARAQQPGSPA 496
Query: 236 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
RFGRLLL+LP LR V S +E ++F TIG+ P++++L DMY
Sbjct: 497 RFGRLLLLLPLLRTVPASRVELIYFHRTIGNTPMEKVLCDMY 538
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D+ +E LQDQAQ +LG + R + P RFGRLLL+LP LR V S +E ++F
Sbjct: 462 ETRGLKDSSQIENLQDQAQVMLGQHARAQQPGSPARFGRLLLLLPLLRTVPASRVELIYF 521
Query: 344 KETIGDIPIQRLLGDMY 360
TIG+ P++++L DMY
Sbjct: 522 HRTIGNTPMEKVLCDMY 538
>gi|348583723|ref|XP_003477622.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Cavia
porcellus]
Length = 603
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/193 (47%), Positives = 125/193 (64%), Gaps = 2/193 (1%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S + QET+ARLLFMAV+W + L L RDQ++LL+E+W ELFLL QWS+P D
Sbjct: 409 SLDSVQETSARLLFMAVKWAKNLPVLSNLPFRDQVILLEEAWGELFLLGAIQWSLPLDSC 468
Query: 147 LLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
L+ +A + E + +QE +ARFR L+ D +E CMKA+ILF PETPG
Sbjct: 469 PLLAPAEASAAGSSQGRLALASVERRFLQETVARFRALAVDPTEFACMKALILFKPETPG 528
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE +FF +TI
Sbjct: 529 LKDPEHVEALQDQSQMMLSQHTKAHHPSQPMRFGKLLLLLPSLRFLTSERIEHVFFCKTI 588
Query: 265 GDIPIQRLLGDMY 277
G+ P+++LL DM+
Sbjct: 589 GNTPMEKLLCDMF 601
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Query: 253 STIERLFFKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGD 307
+++ER F +ET+ + + K+ ETPGL D + VE LQDQ+Q +L
Sbjct: 489 ASVERRFLQETVARFRALAVDPTEFACMKALILFKPETPGLKDPEHVEALQDQSQMMLSQ 548
Query: 308 YVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 360
+ + + QP RFG+LLL+LPSLR + IE +FF +TIG+ P+++LL DM+
Sbjct: 549 HTKAHHPSQPMRFGKLLLLLPSLRFLTSERIEHVFFCKTIGNTPMEKLLCDMF 601
>gi|383861940|ref|XP_003706442.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Megachile
rotundata]
Length = 537
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 17/222 (7%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
T PP P L SAE ET+ARLLFMAV+W + L F +L RDQ++LL+E+W EL
Sbjct: 315 TQIPPVIPSLYSP-ASAETVYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSEL 373
Query: 132 FLLHLAQWSIPWDLSLLINCEKAR----------------ERLPPDDVRVNNEIKLIQEI 175
FLL+ QW +P + S L N + + +V +++ + +
Sbjct: 374 FLLNAVQWCLPLESSPLFNSAELTALTLSPHPHPHPGIHMQTTTGKPSQVAADVRHLHDT 433
Query: 176 LARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 235
L R++ + D +E CMKA++LF PET GL D+ +E LQDQAQ +LG + R + P
Sbjct: 434 LQRYKAVMVDPAEFACMKAIVLFRPETRGLKDSSQIENLQDQAQVMLGQHARAQQPASPA 493
Query: 236 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
RFGRLLL+LP LR V S +E ++F TIG+ P++++L DMY
Sbjct: 494 RFGRLLLLLPLLRTVPASRVELIYFHRTIGNTPMEKVLCDMY 535
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D+ +E LQDQAQ +LG + R + P RFGRLLL+LP LR V S +E ++F
Sbjct: 459 ETRGLKDSSQIENLQDQAQVMLGQHARAQQPASPARFGRLLLLLPLLRTVPASRVELIYF 518
Query: 344 KETIGDIPIQRLLGDMY 360
TIG+ P++++L DMY
Sbjct: 519 HRTIGNTPMEKVLCDMY 535
>gi|345487763|ref|XP_001606227.2| PREDICTED: photoreceptor-specific nuclear receptor [Nasonia
vitripennis]
Length = 551
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 125/208 (60%), Gaps = 17/208 (8%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL+ QW +P + S
Sbjct: 342 SVETVYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAVQWCLPLESS 401
Query: 147 LLINCEKARERL-----------------PPDDVRVNNEIKLIQEILARFRQLSPDGSEC 189
L + + P +V +++ + ++L R++ + D +E
Sbjct: 402 PLFSAAELSALTLSPVHPVHPHSGLHLPSPTKSNQVGVDVRYLHDMLHRYKSIMVDPAEF 461
Query: 190 GCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRA 249
CMKA+ILF PET GL D +E LQDQAQ +LG + R ++ P RFGRLLL+LP LR
Sbjct: 462 ACMKAIILFRPETRGLKDLNQIENLQDQAQVMLGQHTRSQHPNNPARFGRLLLLLPLLRN 521
Query: 250 VRQSTIERLFFKETIGDIPIQRLLGDMY 277
V + +E ++F TIG+ P++++L DMY
Sbjct: 522 VPATRVELIYFHRTIGNTPMEKVLCDMY 549
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQAQ +LG + R ++ P RFGRLLL+LP LR V + +E ++F
Sbjct: 473 ETRGLKDLNQIENLQDQAQVMLGQHTRSQHPNNPARFGRLLLLLPLLRNVPATRVELIYF 532
Query: 344 KETIGDIPIQRLLGDMY 360
TIG+ P++++L DMY
Sbjct: 533 HRTIGNTPMEKVLCDMY 549
>gi|426248035|ref|XP_004017771.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Ovis aries]
gi|426248039|ref|XP_004017773.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 3 [Ovis aries]
gi|426248041|ref|XP_004017774.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 4 [Ovis aries]
gi|426248043|ref|XP_004017775.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 5 [Ovis aries]
Length = 261
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 53 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 112
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 113 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 172
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 173 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 232
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 233 LVGKTPIETLIRDMLLSGSSFNWP 256
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 174 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 233
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 234 VGKTPIETLIRDMLLSGSSFN 254
>gi|7305323|ref|NP_038736.1| photoreceptor-specific nuclear receptor [Mus musculus]
gi|10720145|sp|Q9QXZ7.1|NR2E3_MOUSE RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|6651227|gb|AAF22228.1|AF148129_1 nuclear receptor [Mus musculus]
gi|7770295|gb|AAF69682.1|AF204053_1 photoreceptor specific nuclear receptor [Mus musculus]
gi|17028410|gb|AAH17521.1| Nuclear receptor subfamily 2, group E, member 3 [Mus musculus]
gi|26343545|dbj|BAC35429.1| unnamed protein product [Mus musculus]
gi|148694043|gb|EDL25990.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_c [Mus
musculus]
Length = 395
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 123/185 (66%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 209 ETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCPLLAPP 268
Query: 153 KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
+A + E + +QE ++RFR L+ D +E C+KA++LF PET GL D + VE
Sbjct: 269 EASGSSQGRLALASAETRFLQETISRFRALAVDPTEFACLKALVLFKPETRGLKDPEHVE 328
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+ P+++L
Sbjct: 329 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKTIGNTPMEKL 388
Query: 273 LGDMY 277
L DM+
Sbjct: 389 LCDMF 393
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 317 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFF 376
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 377 RKTIGNTPMEKLLCDMF 393
>gi|431907899|gb|ELK11506.1| COUP transcription factor 1 [Pteropus alecto]
Length = 263
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 53 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 112
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 113 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 172
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 173 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 232
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 233 LVGKTPIETLIRDMLLSGSSFNWP 256
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 171 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 230
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 231 VRLVGKTPIETLIRDMLLSGSSFN 254
>gi|312381897|gb|EFR27526.1| hypothetical protein AND_05729 [Anopheles darlingi]
Length = 399
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 123/195 (63%), Gaps = 6/195 (3%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F +L+ RDQ++LL+ESW ELFLL+ QW +P D
Sbjct: 203 ETIYETSARLLFMAVKWAKNLPSFASLTFRDQVILLEESWAELFLLNAIQWCMPIDTTAC 262
Query: 145 --LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
SL +C ++ +++++ + L RF+ + D +E CMKA++LF E
Sbjct: 263 TLFSLNEHCNSVNNSGFFKPGQLAQDLRILNDTLCRFKSVMVDPAEFACMKAIVLFRSEA 322
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQDQAQ +L + R ++ Q RFGRLLLMLP LRAV IE ++F++
Sbjct: 323 RGLKDPVQIENLQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRAVNSQKIESIYFQK 382
Query: 263 TIGDIPIQRLLGDMY 277
TIG+ P++++L DMY
Sbjct: 383 TIGNTPMEKVLCDMY 397
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL D +E LQDQAQ +L + R ++ Q RFGRLLLMLP LRAV IE ++F
Sbjct: 321 EARGLKDPVQIENLQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRAVNSQKIESIYF 380
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P++++L DMY
Sbjct: 381 QKTIGNTPMEKVLCDMY 397
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 214 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 273
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 274 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 333
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 334 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 393
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 394 LVGKTPIETLIRDMLLSGSSFNWP 417
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 335 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 394
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 395 VGKTPIETLIRDMLLSGSSFN 415
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 208 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 267
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 268 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 327
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 328 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 387
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 388 LVGKTPIETLIRDMLLSGSSFNWP 411
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 329 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 388
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 389 VGKTPIETLIRDMLLSGSSFN 409
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 203 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 262
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 263 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 322
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 323 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 382
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 383 LVGKTPIETLIRDMLLSGSSFNWP 406
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 324 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 383
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VGKTPIETLIRDMLLSGSSFN 404
>gi|355691480|gb|EHH26665.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 270
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 60 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 119
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 120 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 179
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 180 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 239
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 240 LVGKTPIETLIRDMLLSGSSFNWP 263
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 181 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 240
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 241 VGKTPIETLIRDMLLSGSSFN 261
>gi|335283227|ref|XP_003354262.1| PREDICTED: COUP transcription factor 1-like isoform 2 [Sus scrofa]
gi|426349454|ref|XP_004042315.1| PREDICTED: COUP transcription factor 1 [Gorilla gorilla gorilla]
gi|151554252|gb|AAI49439.1| NR2F1 protein [Bos taurus]
Length = 273
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 63 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 122
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 123 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 182
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 183 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 242
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 243 LVGKTPIETLIRDMLLSGSSFNWP 266
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 181 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 240
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 241 VRLVGKTPIETLIRDMLLSGSSFN 264
>gi|223555951|ref|NP_001138628.1| COUP transcription factor 2 isoform c [Homo sapiens]
gi|223555953|ref|NP_001138629.1| COUP transcription factor 2 isoform c [Homo sapiens]
gi|73951115|ref|XP_858826.1| PREDICTED: COUP transcription factor 2 isoform 4 [Canis lupus
familiaris]
gi|114659052|ref|XP_001135366.1| PREDICTED: COUP transcription factor 2 isoform 2 [Pan troglodytes]
gi|332238782|ref|XP_003268581.1| PREDICTED: COUP transcription factor 2 isoform 3 [Nomascus
leucogenys]
gi|338717601|ref|XP_003363657.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Equus
caballus]
gi|403258148|ref|XP_003921639.1| PREDICTED: COUP transcription factor 2 isoform 2 [Saimiri
boliviensis boliviensis]
gi|403258150|ref|XP_003921640.1| PREDICTED: COUP transcription factor 2 isoform 3 [Saimiri
boliviensis boliviensis]
gi|410960650|ref|XP_003986902.1| PREDICTED: COUP transcription factor 2 isoform 2 [Felis catus]
gi|410960652|ref|XP_003986903.1| PREDICTED: COUP transcription factor 2 isoform 3 [Felis catus]
gi|441616841|ref|XP_004088401.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
gi|119622602|gb|EAX02197.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_c
[Homo sapiens]
gi|148675208|gb|EDL07155.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a [Mus
musculus]
gi|148675209|gb|EDL07156.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a [Mus
musculus]
gi|194385096|dbj|BAG60954.1| unnamed protein product [Homo sapiens]
gi|221045560|dbj|BAH14457.1| unnamed protein product [Homo sapiens]
gi|325495511|gb|ADZ17361.1| chicken ovalbumin upstream promoter-transcription factor II variant
3 [Homo sapiens]
gi|344238582|gb|EGV94685.1| COUP transcription factor 2 [Cricetulus griseus]
Length = 261
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 53 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 112
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 113 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 172
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 173 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 232
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 233 LVGKTPIETLIRDMLLSGSSFNWP 256
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 174 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 233
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 234 VGKTPIETLIRDMLLSGSSFN 254
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 200 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 259
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 260 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 319
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 320 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 379
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 380 LVGKTPIETLIRDMLLSGSSFNWP 403
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 321 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 380
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 381 VGKTPIETLIRDMLLSGSSFN 401
>gi|335283229|ref|XP_003354263.1| PREDICTED: COUP transcription factor 1-like isoform 3 [Sus scrofa]
gi|344253194|gb|EGW09298.1| COUP transcription factor 1 [Cricetulus griseus]
Length = 263
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 53 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 112
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 113 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 172
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 173 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 232
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 233 LVGKTPIETLIRDMLLSGSSFNWP 256
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 174 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 233
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 234 VGKTPIETLIRDMLLSGSSFN 254
>gi|426248037|ref|XP_004017772.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Ovis aries]
Length = 281
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 73 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 132
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 133 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 192
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 193 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 252
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 253 LVGKTPIETLIRDMLLSGSSFNWP 276
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 194 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 253
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 254 VGKTPIETLIRDMLLSGSSFN 274
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 327 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 386
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 387 VGKTPIETLIRDMLLSGSSF 406
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 220 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 279
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 280 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 339
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 340 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 399
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 400 LVGKTPIETLIRDMLLSGSSFNWP 423
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 341 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 400
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 401 VGKTPIETLIRDMLLSGSSFN 421
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 202 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 261
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 262 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTSDA 321
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 322 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 381
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 382 LVGKTPIETLIRDMLLSGSSFNWP 405
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 323 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 382
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 383 VGKTPIETLIRDMLLSGSSFN 403
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 203 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 262
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 263 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 322
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 323 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 382
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 383 LVGKTPIETLIRDMLLSGSSFNWP 406
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 383
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VGKTPIETLIRDMLLSGSSFN 404
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 173 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 232
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 233 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 292
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 293 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 352
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 353 LVGKTPIETLIRDMLLSGSSFNWP 376
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 294 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 353
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 354 VGKTPIETLIRDMLLSGSSF 373
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 327 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 386
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 387 VGKTPIETLIRDMLLSGSSF 406
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 214 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 273
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 274 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 333
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 334 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 393
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 394 LVGKTPIETLIRDMLLSGSSFNWP 417
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 335 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 394
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 395 VGKTPIETLIRDMLLSGSSF 414
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 209 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 268
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 269 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 328
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 329 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 388
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 389 LVGKTPIETLIRDMLLSGSSFNWP 412
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 330 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 389
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 390 VGKTPIETLIRDMLLSGSSFN 410
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 212 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 271
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 272 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 331
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 332 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 391
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 392 LVGKTPIETLIRDMLLSGSSFNWP 415
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 333 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 392
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 393 VGKTPIETLIRDMLLSGSSF 412
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 213 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 272
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 273 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 332
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 333 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 392
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 393 LVGKTPIETLIRDMLLSGSSFNWP 416
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 334 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 393
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 394 VGKTPIETLIRDMLLSGSSF 413
>gi|395502499|ref|XP_003755617.1| PREDICTED: COUP transcription factor 2 isoform 3 [Sarcophilus
harrisii]
Length = 418
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 210 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 269
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 270 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 329
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 330 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 389
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 390 LVGKTPIETLIRDMLLSGSSFNWP 413
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 331 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 390
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 391 VGKTPIETLIRDMLLSGSSFN 411
>gi|209156457|pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 36 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 95
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 96 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 155
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 156 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 215
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 216 LVGKTPIETLIRDMLLSGSSFNWP 239
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 154 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 213
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 214 VRLVGKTPIETLIRDMLLSGSSFN 237
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 200 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 259
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 260 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 319
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 320 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 379
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 380 LVGKTPIETLIRDMLLSGSSFNWP 403
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 321 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 380
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 381 VGKTPIETLIRDMLLSGSSFN 401
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 203 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 262
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 263 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 322
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 323 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 382
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 383 LVGKTPIETLIRDMLLSGSSFNWP 406
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 383
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VGKTPIETLIRDMLLSGSSFN 404
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 203 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 262
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 263 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSDA 322
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 323 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 382
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 383 LVGKTPIETLIRDMLLSGSSFNWP 406
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 324 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 383
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VGKTPIETLIRDMLLSGSSFN 404
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 215 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 274
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 275 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 334
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 335 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 394
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 395 LVGKTPIETLIRDMLLSGSSFNWP 418
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 336 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 395
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 396 VGKTPIETLIRDMLLSGSSFN 416
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 202 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 261
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 262 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 321
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 322 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 381
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 382 LVGKTPIETLIRDMLLSGSSFNWP 405
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 323 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 382
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 383 VGKTPIETLIRDMLLSGSSFN 403
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 202 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 261
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 262 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSDA 321
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 322 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 381
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 382 LVGKTPIETLIRDMLLSGSSFNWP 405
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 323 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 382
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 383 VGKTPIETLIRDMLLSGSSFN 403
>gi|351697339|gb|EHB00258.1| COUP transcription factor 2 [Heterocephalus glaber]
Length = 271
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 63 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 122
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 123 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 182
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 183 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 242
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 243 LVGKTPIETLIRDMLLSGSSFNWP 266
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 184 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 243
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 244 VGKTPIETLIRDMLLSGSSFN 264
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 210 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 269
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 270 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 329
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 330 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 389
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 390 LVGKTPIETLIRDMLLSGSSFNWP 413
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 331 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 390
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 391 VGKTPIETLIRDMLLSGSSF 410
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 213 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 272
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 273 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 332
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 333 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 392
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 393 LVGKTPIETLIRDMLLSGSSFNWP 416
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 334 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 393
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 394 VGKTPIETLIRDMLLSGSSF 413
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 202 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 261
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 262 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 321
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 322 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 381
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 382 LVGKTPIETLIRDMLLSGSSFNWP 405
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 323 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 382
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 383 VGKTPIETLIRDMLLSGSSFN 403
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 203 IMGIENICELAARLLFSAVEWSRNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 262
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 263 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTSDA 322
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 323 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 382
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 383 LVGKTPIETLIRDMLLSGSSFNWP 406
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 324 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 383
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VGKTPIETLIRDMLLSGSSFN 404
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 173 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 232
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 233 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 292
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 293 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 352
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 353 LVGKTPIETLIRDMLLSGSSFNWP 376
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 291 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 350
Query: 344 KETIGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 351 VRLVGKTPIETLIRDMLLSGSSF 373
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 212 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 271
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 272 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 331
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 332 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 391
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 392 LVGKTPIETLIRDMLLSGSSFNWP 415
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 333 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 392
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 393 VGKTPIETLIRDMLLSGSSF 412
>gi|307199534|gb|EFN80135.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 538
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 126/207 (60%), Gaps = 16/207 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
SAE ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL+ QW +P + S
Sbjct: 330 SAETVYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAVQWCLPLESS 389
Query: 147 -LLINCEKARERLPP---------------DDVRVNNEIKLIQEILARFRQLSPDGSECG 190
L E L P +V +++ + + L R++ + D +E
Sbjct: 390 PLFSAAELTALTLSPHPHPHSGMHLQTTTGKPSQVAADVRHLHDTLQRYKAIMVDPAEFA 449
Query: 191 CMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV 250
CMKA++LF PET GL D+ +E LQDQAQ +LG + R + P RFGRLLL+LP LRAV
Sbjct: 450 CMKAIVLFRPETRGLKDSSQIENLQDQAQVMLGQHARAQQPASPARFGRLLLLLPLLRAV 509
Query: 251 RQSTIERLFFKETIGDIPIQRLLGDMY 277
+ +E ++F TIG+ P++++L DMY
Sbjct: 510 PAARVELIYFHRTIGNTPMEKVLCDMY 536
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D+ +E LQDQAQ +LG + R + P RFGRLLL+LP LRAV + +E ++F
Sbjct: 460 ETRGLKDSSQIENLQDQAQVMLGQHARAQQPASPARFGRLLLLLPLLRAVPAARVELIYF 519
Query: 344 KETIGDIPIQRLLGDMY 360
TIG+ P++++L DMY
Sbjct: 520 HRTIGNTPMEKVLCDMY 536
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 350 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 409
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 410 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 469
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 470 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 529
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 530 LVGKTPIETLIRDMLLSGSSFNWP 553
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 471 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 530
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 531 VGKTPIETLIRDMLLSGSSF 550
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 201 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 260
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 261 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSDA 320
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 321 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 380
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 381 LVGKTPIETLIRDMLLSGSSFNWP 404
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 322 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 381
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 382 VGKTPIETLIRDMLLSGSSFN 402
>gi|47211605|emb|CAF91926.1| unnamed protein product [Tetraodon nigroviridis]
Length = 267
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 59 IMGIENICELAARLLFSAVEWSRNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 118
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 119 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTSDA 178
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 179 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 238
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 239 LVGKTPIETLIRDMLLSGSSFNWP 262
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 180 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 239
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 240 VGKTPIETLIRDMLLSGSSFN 260
>gi|242247451|ref|NP_001156015.1| COUP transcription factor 2 [Ovis aries]
gi|134024805|gb|AAI34736.1| NR2F2 protein [Bos taurus]
gi|238799806|gb|ACR55775.1| nuclear receptor subfamily 2 group F member 2 [Ovis aries]
Length = 281
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 73 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 132
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 133 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 192
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 193 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 252
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 253 LVGKTPIETLIRDMLLSGSSFNWP 276
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 191 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 250
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 251 VRLVGKTPIETLIRDMLLSGSSFN 274
>gi|73611910|ref|NP_899084.2| COUP transcription factor 2 isoform 2 [Mus musculus]
gi|223555949|ref|NP_001138627.1| COUP transcription factor 2 isoform b [Homo sapiens]
gi|298228995|ref|NP_001177182.1| COUP transcription factor 2 isoform 2 [Sus scrofa]
gi|73951111|ref|XP_536178.2| PREDICTED: COUP transcription factor 2 isoform 1 [Canis lupus
familiaris]
gi|291409135|ref|XP_002720865.1| PREDICTED: nuclear receptor subfamily 2, group F, member 2-like
[Oryctolagus cuniculus]
gi|332238778|ref|XP_003268579.1| PREDICTED: COUP transcription factor 2 isoform 1 [Nomascus
leucogenys]
gi|338717599|ref|XP_003363656.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Equus
caballus]
gi|344284393|ref|XP_003413952.1| PREDICTED: COUP transcription factor 2 isoform 2 [Loxodonta
africana]
gi|354465707|ref|XP_003495319.1| PREDICTED: COUP transcription factor 2-like [Cricetulus griseus]
gi|395502497|ref|XP_003755616.1| PREDICTED: COUP transcription factor 2 isoform 2 [Sarcophilus
harrisii]
gi|403258146|ref|XP_003921638.1| PREDICTED: COUP transcription factor 2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|410960648|ref|XP_003986901.1| PREDICTED: COUP transcription factor 2 isoform 1 [Felis catus]
gi|76780223|gb|AAI06084.1| NR2F2 protein [Homo sapiens]
gi|119622601|gb|EAX02196.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_b
[Homo sapiens]
gi|149057165|gb|EDM08488.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_b
[Rattus norvegicus]
gi|194295609|gb|ACF40832.1| orphan nuclear receptor COUP-TFII [Sus scrofa]
gi|194377044|dbj|BAG63083.1| unnamed protein product [Homo sapiens]
gi|283482326|emb|CAR63888.1| nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|325495509|gb|ADZ17360.1| chicken ovalbumin upstream promoter-transcription factor II variant
2 [Homo sapiens]
gi|384949090|gb|AFI38150.1| COUP transcription factor 2 isoform b [Macaca mulatta]
gi|387542112|gb|AFJ71683.1| COUP transcription factor 2 isoform b [Macaca mulatta]
gi|410216136|gb|JAA05287.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258702|gb|JAA17318.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307124|gb|JAA32162.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 281
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 73 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 132
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 133 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 192
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 193 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 252
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 253 LVGKTPIETLIRDMLLSGSSFNWP 276
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 194 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 253
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 254 VGKTPIETLIRDMLLSGSSFN 274
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 202 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 261
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 262 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 321
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 322 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 381
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 382 LVGKTPIETLIRDMLLSGSSFNWP 405
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 320 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 379
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 380 VRLVGKTPIETLIRDMLLSGSSFN 403
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 188 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 247
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 248 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 307
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 308 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 367
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 368 LVGKTPIETLIRDMLLSGSSFNWP 391
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 55/83 (66%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 306 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 365
Query: 344 KETIGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 366 VRLVGKTPIETLIRDMLLSGSSF 388
>gi|410049651|ref|XP_003952785.1| PREDICTED: COUP transcription factor 2 [Pan troglodytes]
Length = 421
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 213 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 272
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 273 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 332
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 333 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 392
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 393 LVGKTPIETLIRDMLLSGSSFNWP 416
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 334 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 393
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 394 VGKTPIETLIRDMLLSGSSFN 414
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 172 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 231
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 232 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 291
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 292 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 351
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 352 LVGKTPIETLIRDMLLSGSSFNWP 375
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 290 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 349
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 350 VRLVGKTPIETLIRDMLLSGSSFN 373
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 213 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 272
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 273 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 332
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 333 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 392
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 393 LVGKTPIETLIRDMLLSGSSFNWP 416
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 334 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 393
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 394 VGKTPIETLIRDMLLSGSSFN 414
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 197 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 256
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 257 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 316
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 317 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 376
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 377 LVGKTPIETLIRDMLLSGSSFNWP 400
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 318 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 377
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 378 VGKTPIETLIRDMLLSGSSFN 398
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFN 407
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 208 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 267
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 268 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 327
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 328 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 387
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 388 LVGKTPIETLIRDMLLSGSSFNWP 411
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 329 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 388
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 389 VGKTPIETLIRDMLLSGSSF 408
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFN 407
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFN 407
>gi|325495563|gb|ADZ17387.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 397
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 187 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 246
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 247 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 306
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 307 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 366
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 367 LVGKTPIETLIRDMLLSGSSFNWP 390
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 55/83 (66%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 305 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 364
Query: 344 KETIGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 365 VRLVGKTPIETLIRDMLLSGSSF 387
>gi|431891667|gb|ELK02268.1| COUP transcription factor 2, partial [Pteropus alecto]
gi|432091002|gb|ELK24218.1| COUP transcription factor 2, partial [Myotis davidii]
Length = 343
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 135 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 194
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 195 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 254
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 255 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 314
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 315 LVGKTPIETLIRDMLLSGSSFNWP 338
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 253 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 312
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 313 VRLVGKTPIETLIRDMLLSGSSFN 336
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ AQ ++P
Sbjct: 200 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLVWSELFVLNAAQCAMPLH 259
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 260 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTTDA 319
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 320 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 379
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 380 LVGKTPIETLIRDMLLSGSSFNWP 403
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 321 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 380
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 381 VGKTPIETLIRDMLLSGSSFN 401
>gi|441616846|ref|XP_004088402.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
Length = 422
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 214 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 273
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 274 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 333
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 334 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 393
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 394 LVGKTPIETLIRDMLLSGSSFNWP 417
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 332 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 391
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 392 VRLVGKTPIETLIRDMLLSGSSFN 415
>gi|443715570|gb|ELU07483.1| hypothetical protein CAPTEDRAFT_224811 [Capitella teleta]
Length = 360
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 157/298 (52%), Gaps = 48/298 (16%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPP 60
VQHERGPRK K ++ L+ H +P P S+VK P + SP
Sbjct: 93 VQHERGPRKSK-----NKLKNLDGSKKHDTP----PQPSSTVK--------PFTVSSPDV 135
Query: 61 PSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQ 120
P + L+ P + + +AR+LF V WV+ + F L DQ
Sbjct: 136 P------IDLSVKFDRP--------IVPVEVPSVSARMLFSIVSWVKQIPAFIALHHTDQ 181
Query: 121 LLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVR-------VNN------ 167
+ LL+E+WK+LFL+ LAQ + D++ L+ + P +R +N+
Sbjct: 182 ITLLEETWKDLFLISLAQTACHLDIATLMENADTKLCNPLQVLRHRDVHSDINDRHLQVA 241
Query: 168 ----EIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILG 223
E K++ +++ R ++++ D +E C++AV+LF + L D +PVE LQDQAQ IL
Sbjct: 242 HFVQEAKIVCDMILRMKRMAMDRTEFACLRAVVLFRQDISRLKDVRPVENLQDQAQMILA 301
Query: 224 DYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
+Y + Q TRFGRLLL P+LRA+ S + R+FF+ET+G+IPI+RL+ D+Y EK
Sbjct: 302 EYSILHHQNQSTRFGRLLLATPALRAIPASLVSRIFFRETVGNIPIERLVCDIYQNEK 359
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 56/77 (72%)
Query: 288 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 347
L D +PVE LQDQAQ IL +Y + Q TRFGRLLL P+LRA+ S + R+FF+ET+
Sbjct: 283 LKDVRPVENLQDQAQMILAEYSILHHQNQSTRFGRLLLATPALRAIPASLVSRIFFRETV 342
Query: 348 GDIPIQRLLGDMYTMEK 364
G+IPI+RL+ D+Y EK
Sbjct: 343 GNIPIERLVCDIYQNEK 359
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 215 VMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 274
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 275 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 334
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 335 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 394
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 395 LVGKTPIETLIRDMLLSGSSFNWP 418
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 336 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 395
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 396 VGKTPIETLIRDMLLSGSSFN 416
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFN 407
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 324 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFN 407
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFN 407
>gi|74223617|dbj|BAE28687.1| unnamed protein product [Mus musculus]
Length = 337
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 53 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 112
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 113 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 172
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 173 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 232
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 233 LVGKTPIETLIRDMLLSGSSFNWP 256
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 174 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 233
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 234 VGKTPIETLIRDMLLSGSSFN 254
>gi|354499555|ref|XP_003511874.1| PREDICTED: COUP transcription factor 1-like [Cricetulus griseus]
Length = 295
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 85 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 144
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 145 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 204
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 205 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 264
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 265 LVGKTPIETLIRDMLLSGSSFNWP 288
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 206 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 265
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 266 VGKTPIETLIRDMLLSGSSFN 286
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDVAHVESLQEKSQCXLEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCXLEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFN 407
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 209 VMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 268
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 269 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 328
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 329 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 388
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 389 LVGKTPIETLIRDMLLSGSSFNWP 412
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 330 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 389
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 390 VGKTPIETLIRDMLLSGSSFN 410
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 247 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 306
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 307 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 366
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 367 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 426
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 427 LVGKTPIETLIRDMLLSGSSFNWP 450
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 368 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 427
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 428 VGKTPIETLIRDMLLSGSSF 447
>gi|355778322|gb|EHH63358.1| COUP transcription factor 2, partial [Macaca fascicularis]
Length = 352
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 144 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 203
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 204 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 263
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 264 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 323
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 324 LVGKTPIETLIRDMLLSGSSFNWP 347
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 262 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 321
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 322 VRLVGKTPIETLIRDMLLSGSSFN 345
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFN 407
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 162 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 221
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 222 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 281
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 282 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 341
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 342 LVGKTPIETLIRDMLLSGSSFNWP 365
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 280 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 339
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 340 VRLVGKTPIETLIRDMLLSGSSFN 363
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 172 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 231
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 232 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 291
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 292 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 351
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 352 LVGKTPIETLIRDMLLSGSSFNWP 375
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 290 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 349
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 350 VRLVGKTPIETLIRDMLLSGSSFN 373
>gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter transcription factor II [Bos taurus]
Length = 339
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 131 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 190
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 191 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 250
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 251 CGLSDVTHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 310
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 311 LVGKTPIETLIRDMLLSGSSFNWP 334
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 249 DACGLSDVTHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 308
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 309 VRLVGKTPIETLIRDMLLSGSSFN 332
>gi|444519103|gb|ELV12583.1| COUP transcription factor 1 [Tupaia chinensis]
Length = 216
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 6 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 65
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 66 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 125
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 126 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 185
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 186 LVGKTPIETLIRDMLLSGSSFNWP 209
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 124 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 183
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 184 VRLVGKTPIETLIRDMLLSGSSFN 207
>gi|440909469|gb|ELR59375.1| COUP transcription factor 2, partial [Bos grunniens mutus]
Length = 348
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 140 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 199
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 200 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 259
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 260 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 319
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 320 LVGKTPIETLIRDMLLSGSSFNWP 343
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 258 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 317
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 318 VRLVGKTPIETLIRDMLLSGSSFN 341
>gi|417409902|gb|JAA51440.1| Putative coup transcription factor 2 isoform 1, partial [Desmodus
rotundus]
Length = 346
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 138 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 197
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 198 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 257
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 258 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 317
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 318 LVGKTPIETLIRDMLLSGSSFNWP 341
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 256 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 315
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 316 VRLVGKTPIETLIRDMLLSGSSFN 339
>gi|281347624|gb|EFB23208.1| hypothetical protein PANDA_013481 [Ailuropoda melanoleuca]
Length = 357
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 149 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 208
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 209 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 268
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 269 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 328
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 329 LVGKTPIETLIRDMLLSGSSFNWP 352
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 267 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 326
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 327 VRLVGKTPIETLIRDMLLSGSSFN 350
>gi|443685615|gb|ELT89169.1| hypothetical protein CAPTEDRAFT_171557 [Capitella teleta]
Length = 437
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 121/190 (63%), Gaps = 1/190 (0%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E E +ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P + S L
Sbjct: 246 ETVYECSARLLFMAVKWSKSLPSFANLPFRDQVILLEEAWSELFLLCAIQWSMPMESSPL 305
Query: 149 INCEKARERLPPDDVRVN-NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
++ + + P + +I+++QE+ RFR D +E C+KA++LF P+T GL D
Sbjct: 306 LSTSEHAQNAPNGKATLTLTDIRILQEVFGRFRVAQVDPAEFACLKAIVLFKPDTRGLKD 365
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDI 267
VE LQDQAQ +L + R + P RFGRLLLMLP LR S IE +FF+ TIG+
Sbjct: 366 PHQVENLQDQAQLMLFQHCRAQRPALPARFGRLLLMLPLLRLAPSSHIENIFFRRTIGNT 425
Query: 268 PIQRLLGDMY 277
P+++LL DM+
Sbjct: 426 PMEKLLCDMF 435
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 51/77 (66%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+T GL D VE LQDQAQ +L + R + P RFGRLLLMLP LR S IE +FF
Sbjct: 359 DTRGLKDPHQVENLQDQAQLMLFQHCRAQRPALPARFGRLLLMLPLLRLAPSSHIENIFF 418
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P+++LL DM+
Sbjct: 419 RRTIGNTPMEKLLCDMF 435
>gi|281346029|gb|EFB21613.1| hypothetical protein PANDA_017952 [Ailuropoda melanoleuca]
Length = 358
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 148 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 207
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 208 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 267
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 268 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 327
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 328 LVGKTPIETLIRDMLLSGSSFNWP 351
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 266 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 325
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 326 VRLVGKTPIETLIRDMLLSGSSFN 349
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 175 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 234
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 235 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 294
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 295 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 354
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 355 LVGKTPIETLIRDMLLSGSSFNWP 378
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 293 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 352
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 353 VRLVGKTPIETLIRDMLLSGSSFN 376
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 117/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 197 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 256
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 257 VAPLSAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 316
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 317 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 376
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 377 LVGKTPIETLIRDMLLSGSSFNWP 400
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 318 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 377
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 378 VGKTPIETLIRDMLLSGSSFN 398
>gi|432861727|ref|XP_004069708.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oryzias
latipes]
Length = 423
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 215 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 274
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 275 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 334
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL + VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 335 CGLSNVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 394
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 395 LVGKTPIETLIRDMLLSGSSFNWP 418
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL + VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 336 GLSNVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 395
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 396 VGKTPIETLIRDMLLSGSSFN 416
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 209 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 268
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 269 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 328
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL + VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 329 CGLSNVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 388
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 389 LVGKTPIETLIRDMLLSGSSFNWP 412
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL + VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 330 GLSNVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 389
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 390 VGKTPIETLIRDMLLSGSSFN 410
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 205 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 264
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 265 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 324
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 325 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 384
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 385 LVGKTPIETLIRDMLLSGSSFNWP 408
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 323 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 382
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 383 VRLVGKTPIETLIRDMLLSGSSFN 406
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 204 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 263
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 264 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 323
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 324 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 383
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 384 LVGKTPIETLIRDMLLSGSSFNWP 407
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 322 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 381
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 382 VRLVGKTPIETLIRDMLLSGSSFN 405
>gi|16797870|gb|AAL29193.1|AF323680_1 nuclear receptor Amtll [Acropora millepora]
Length = 380
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 31/291 (10%)
Query: 1 VQHERGPRKPKIHNAH---HQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKS 57
VQHERGPR + ++E H+ P+G + T+L + ++
Sbjct: 102 VQHERGPRSSTLRKQKMLKEAQERMEIATTAHAQQ--SPSGFIN-----TLLAAETCMEG 154
Query: 58 PPPPSHH-------HPSMF---LATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVR 107
P + P F L+ HP E E A+LLFM+V+W R
Sbjct: 155 CQLPENDIDLGLDFKPIRFQSDLSISMYYSHP---------EAVCEAAAKLLFMSVKWAR 205
Query: 108 CLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS-LLINCEKARERLPPDD-VRV 165
+ F +L RDQ++LL+E W+ELF+L +QWS+P +++ +L + PP+ V V
Sbjct: 206 NIPSFMSLPFRDQVILLEEGWRELFVLGASQWSMPLEIAPILAAAGMHVDTTPPETIVDV 265
Query: 166 NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDY 225
++L+QE + +F+ + D +E C+KA++LF GL D + VE QDQAQ +LG+Y
Sbjct: 266 MATVRLLQETVNKFKAANVDSTEYACLKAIVLFKSTACGLKDPEQVESTQDQAQLMLGEY 325
Query: 226 VRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
VR + Q RFGRLLL+LP+LR + IE LFFK+TIG +PI+RLL DM
Sbjct: 326 VRAQCPTQLARFGRLLLLLPALRRISTKEIEELFFKKTIGAVPIERLLSDM 376
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 53/73 (72%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D + VE QDQAQ +LG+YVR + Q RFGRLLL+LP+LR + IE LFFK+T
Sbjct: 304 GLKDPEQVESTQDQAQLMLGEYVRAQCPTQLARFGRLLLLLPALRRISTKEIEELFFKKT 363
Query: 347 IGDIPIQRLLGDM 359
IG +PI+RLL DM
Sbjct: 364 IGAVPIERLLSDM 376
>gi|195402633|ref|XP_002059909.1| GJ14974 [Drosophila virilis]
gi|194140775|gb|EDW57246.1| GJ14974 [Drosophila virilis]
Length = 577
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 122/200 (61%), Gaps = 11/200 (5%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F LS RDQ++LL+ESW ELFLL+ QW IP D
Sbjct: 376 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 435
Query: 145 --LSLLINCEKARERLPPDDVRVNNE-----IKLIQEILARFRQLSPDGSECGCMKAVIL 197
S+ +C D V+ E ++ + EI +++ + D +E C+KA++L
Sbjct: 436 ALFSVAEHCNNLENNASNGDNCVSKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVL 495
Query: 198 FTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
F PET GL D +E LQDQA +L + + +++ Q RFGRLLLMLP LR + IE
Sbjct: 496 FRPETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMINSHKIES 555
Query: 258 LFFKETIGDIPIQRLLGDMY 277
+FF+ TIG+ P++++L DMY
Sbjct: 556 IFFQRTIGNTPMEKVLCDMY 575
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQA +L + + +++ Q RFGRLLLMLP LR + IE +FF
Sbjct: 499 ETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMINSHKIESIFF 558
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++++L DMY
Sbjct: 559 QRTIGNTPMEKVLCDMY 575
>gi|344265387|ref|XP_003404766.1| PREDICTED: hypothetical protein LOC100660824 [Loxodonta africana]
Length = 1396
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 1186 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 1245
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + L D +E C+KA++LFT +
Sbjct: 1246 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQGEKLKALHVDSAEYSCLKAIVLFTSDA 1305
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 1306 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 1365
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 1366 LVGKTPIETLIRDMLLSGSSFNWP 1389
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 1307 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 1366
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 1367 VGKTPIETLIRDMLLSGSSF 1386
>gi|355707891|gb|AES03097.1| nuclear receptor subfamily 2, group F, member 1 [Mustela putorius
furo]
Length = 275
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 117/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+
Sbjct: 68 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMQLH 127
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 128 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 187
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 188 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 247
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 248 LVGKTPIETLIRDMLLSGSSFNWP 271
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 189 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 248
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 249 VGKTPIETLIRDMLLSGSSFN 269
>gi|270011038|gb|EFA07486.1| hormone receptor 51 [Tribolium castaneum]
Length = 470
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 74 QPPPHPGLLQILM--SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+P P P L L + E ET+ARLLFMAV+W + L F +L RDQ++LL+E+W EL
Sbjct: 266 RPEPQPALTSGLYPSTHETIYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSEL 325
Query: 132 FLLHLAQWSIPWDLSL--LINC-EKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSE 188
FLL+ QW +P D+S L N E + DVR+ + + L RF+ + D +E
Sbjct: 326 FLLNAIQWCMPLDVSASPLFNVNEHVKNGHSATDVRI------LADTLMRFKAIHVDPAE 379
Query: 189 CGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLR 248
C+KA++LF ET GL D +E LQDQAQ +L + R + Q RFGRLLLMLP LR
Sbjct: 380 FACLKAIVLFRSETRGLKDPSQIENLQDQAQVMLWQHCRTQLPGQVARFGRLLLMLPLLR 439
Query: 249 AVRQSTIERLFFKETIGDIPIQRLLGDMY 277
V S +E +FF++TIG+ P++++L DMY
Sbjct: 440 IVPASRVEAVFFQKTIGNTPMEKVLCDMY 468
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQAQ +L + R + Q RFGRLLLMLP LR V S +E +FF
Sbjct: 392 ETRGLKDPSQIENLQDQAQVMLWQHCRTQLPGQVARFGRLLLMLPLLRIVPASRVEAVFF 451
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P++++L DMY
Sbjct: 452 QKTIGNTPMEKVLCDMY 468
>gi|170065210|ref|XP_001867845.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167882297|gb|EDS45680.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 505
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 122/195 (62%), Gaps = 6/195 (3%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F +L+ RDQ++LL+ESW ELFLL+ QW +P +
Sbjct: 309 ETIYETSARLLFMAVKWAKNLPSFASLTFRDQVILLEESWAELFLLNAIQWCMPIETSAC 368
Query: 145 --LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
SL +C ++ +++++ + L RF+ + D +E CMKA++LF E
Sbjct: 369 TLFSLNEHCSSVNNSGIFKPGQLAQDLRVLNDTLCRFKSVMVDPAEFACMKAIVLFRSEA 428
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQDQAQ +L + R ++ Q RFGRLLLMLP LR + IE ++F++
Sbjct: 429 RGLKDPVQIENLQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRIINSHKIESIYFQK 488
Query: 263 TIGDIPIQRLLGDMY 277
TIG+ P++++L DMY
Sbjct: 489 TIGNTPMEKVLCDMY 503
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL D +E LQDQAQ +L + R ++ Q RFGRLLLMLP LR + IE ++F
Sbjct: 427 EARGLKDPVQIENLQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRIINSHKIESIYF 486
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P++++L DMY
Sbjct: 487 QKTIGNTPMEKVLCDMY 503
>gi|157115449|ref|XP_001658211.1| expressed protein (HR51) [Aedes aegypti]
gi|108876909|gb|EAT41134.1| AAEL007190-PA [Aedes aegypti]
Length = 594
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 123/197 (62%), Gaps = 6/197 (3%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD-- 144
S E ET+ARLLFMAV+W + L F +L+ RDQ++LL+ESW ELFLL+ QW +P D
Sbjct: 396 SPETIYETSARLLFMAVKWAKNLPSFASLTFRDQVILLEESWSELFLLNAIQWCMPIDTS 455
Query: 145 ----LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP 200
SL +C ++ +++++ + L RF+ + D +E CMKA++LF
Sbjct: 456 ACTLFSLNEHCSSVNNSGVFKPGQLAQDLRVLNDTLCRFKSVMVDPAEFACMKAIVLFRS 515
Query: 201 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
E GL D +E LQDQAQ +L + R ++ Q RFGRLLLMLP LR + IE ++F
Sbjct: 516 EARGLKDPVQIENLQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRIINSHKIESIYF 575
Query: 261 KETIGDIPIQRLLGDMY 277
++TIG+ P++++L DMY
Sbjct: 576 QKTIGNTPMEKVLCDMY 592
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL D +E LQDQAQ +L + R ++ Q RFGRLLLMLP LR + IE ++F
Sbjct: 516 EARGLKDPVQIENLQDQAQVMLAQHSRTQFPGQIARFGRLLLMLPLLRIINSHKIESIYF 575
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P++++L DMY
Sbjct: 576 QKTIGNTPMEKVLCDMY 592
>gi|307168984|gb|EFN61863.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 279
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 123/207 (59%), Gaps = 16/207 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
SAE ET+ARLLFMAV+W + L F L RDQ++LL+E W ELFLL+ QW +P + S
Sbjct: 71 SAETVYETSARLLFMAVKWAKNLPSFAGLPFRDQVILLEEVWSELFLLNAVQWCLPLESS 130
Query: 147 -LLINCEKARERLPP---------------DDVRVNNEIKLIQEILARFRQLSPDGSECG 190
L E L P +V +++ + + L R++ + D +E
Sbjct: 131 PLFSAAELTALTLSPHPHPHSGLHLQTTTGKPSQVAADVRHLHDTLQRYKAVMVDPAEFA 190
Query: 191 CMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV 250
CMKA++LF PET GL D+ +E LQDQAQ +LG + R + P RFGRLLL+LP LR V
Sbjct: 191 CMKAIVLFRPETRGLKDSSQIENLQDQAQLMLGHHARAQQPNSPARFGRLLLLLPLLRMV 250
Query: 251 RQSTIERLFFKETIGDIPIQRLLGDMY 277
S +E ++F TIG+ P++++L DMY
Sbjct: 251 PASRVELIYFHRTIGNTPMEKVLCDMY 277
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D+ +E LQDQAQ +LG + R + P RFGRLLL+LP LR V S +E ++F
Sbjct: 201 ETRGLKDSSQIENLQDQAQLMLGHHARAQQPNSPARFGRLLLLLPLLRMVPASRVELIYF 260
Query: 344 KETIGDIPIQRLLGDMY 360
TIG+ P++++L DMY
Sbjct: 261 HRTIGNTPMEKVLCDMY 277
>gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma floridae]
Length = 443
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 235 IMGIDNICELAARLLFSAVEWARNIPYFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 294
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 295 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 354
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA ++ LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 355 CGLSDAAHIDSLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 414
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 415 LVGKTPIETLIRDMLLSGSSFNWP 438
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA ++ LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 353 DACGLSDAAHIDSLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 412
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 413 VRLVGKTPIETLIRDMLLSGSSFN 436
>gi|242013777|ref|XP_002427577.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
gi|212511992|gb|EEB14839.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
Length = 403
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 152/319 (47%), Gaps = 49/319 (15%)
Query: 1 VQHERGPRKPKIHNA----------HHQDSKLEP-------HNPHHSPDLLPPNGISSVK 43
VQHERGPR + D P H+ H DL P K
Sbjct: 88 VQHERGPRNSTLRRQMAFYFKEPCDTTSDIGCGPSVSPILQHSQTHVLDLALP------K 141
Query: 44 IPPTVLYPPSGLKSPP--PPSHHHPSMFLATHQPPPHPGLLQI----LMSAEKCQETTAR 97
IP +V P S P P+ +F T P P L S E E+ AR
Sbjct: 142 IPTSV-SPRSESNGSPLMQPTMAAAFLFGQTLIPKLTPNFTLTNAIPLGSVEALCESAAR 200
Query: 98 LLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARER 157
LLFM V W + + F L+ +DQLLLL+ESW+ELF+L +Q+ +P +L L+
Sbjct: 201 LLFMNVTWAKNVPAFTRLNYKDQLLLLEESWRELFVLSASQFMLPLELVDLLTAHTTVTA 260
Query: 158 LPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF---------------TPET 202
+ + E+K QE L +F+QL D E C++A++LF P +
Sbjct: 261 NSEKALTIAQEVKQFQETLIKFKQLHVDIHEYACLRAIVLFKTSFDPSNNTVTSSTAPSS 320
Query: 203 PG----LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
G L D V +QD Q L Y+ + QP RFG+LLL+LPSLR+V +TIE L
Sbjct: 321 SGEGKTLHDLAEVAAVQDHTQLTLNKYISAAHPTQPFRFGKLLLLLPSLRSVSNNTIEEL 380
Query: 259 FFKETIGDIPIQRLLGDMY 277
FF+ TIG+IPI+R++ DMY
Sbjct: 381 FFRRTIGNIPIERIICDMY 399
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 52/79 (65%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E L D V +QD Q L Y+ + QP RFG+LLL+LPSLR+V +TIE L
Sbjct: 321 SGEGKTLHDLAEVAAVQDHTQLTLNKYISAAHPTQPFRFGKLLLLLPSLRSVSNNTIEEL 380
Query: 342 FFKETIGDIPIQRLLGDMY 360
FF+ TIG+IPI+R++ DMY
Sbjct: 381 FFRRTIGNIPIERIICDMY 399
>gi|189238719|ref|XP_970391.2| PREDICTED: similar to Hormone receptor 51 CG16801-PA [Tribolium
castaneum]
Length = 393
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 129/209 (61%), Gaps = 11/209 (5%)
Query: 74 QPPPHPGLLQILM--SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+P P P L L + E ET+ARLLFMAV+W + L F +L RDQ++LL+E+W EL
Sbjct: 189 RPEPQPALTSGLYPSTHETIYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSEL 248
Query: 132 FLLHLAQWSIPWDLSL--LINC-EKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSE 188
FLL+ QW +P D+S L N E + DVR+ + + L RF+ + D +E
Sbjct: 249 FLLNAIQWCMPLDVSASPLFNVNEHVKNGHSATDVRI------LADTLMRFKAIHVDPAE 302
Query: 189 CGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLR 248
C+KA++LF ET GL D +E LQDQAQ +L + R + Q RFGRLLLMLP LR
Sbjct: 303 FACLKAIVLFRSETRGLKDPSQIENLQDQAQVMLWQHCRTQLPGQVARFGRLLLMLPLLR 362
Query: 249 AVRQSTIERLFFKETIGDIPIQRLLGDMY 277
V S +E +FF++TIG+ P++++L DMY
Sbjct: 363 IVPASRVEAVFFQKTIGNTPMEKVLCDMY 391
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQAQ +L + R + Q RFGRLLLMLP LR V S +E +FF
Sbjct: 315 ETRGLKDPSQIENLQDQAQVMLWQHCRTQLPGQVARFGRLLLMLPLLRIVPASRVEAVFF 374
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P++++L DMY
Sbjct: 375 QKTIGNTPMEKVLCDMY 391
>gi|47224170|emb|CAG13090.1| unnamed protein product [Tetraodon nigroviridis]
Length = 746
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 115/194 (59%), Gaps = 2/194 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 552 VMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 611
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 612 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 671
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 672 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 731
Query: 263 TIGDIPIQRLLGDM 276
+G PI+ L+ DM
Sbjct: 732 LVGKTPIETLIRDM 745
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 107/225 (47%), Gaps = 45/225 (20%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 128 VMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 187
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-- 200
++ L+ D V + I++ QE + + + L D +E C+KA++LFT
Sbjct: 188 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 247
Query: 201 -----------------------------------------ETPGLVDAQPVEMLQDQAQ 219
+ GL D VE LQ+++Q
Sbjct: 248 TIDGRAPKFTLCMNVTITHADSSHSSPDPNICAGYMLLLILDACGLSDVAHVESLQEKSQ 307
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
C L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF I
Sbjct: 308 CALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLI 352
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 52/76 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 670 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 729
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 730 VRLVGKTPIETLIRDM 745
>gi|156376474|ref|XP_001630385.1| predicted protein [Nematostella vectensis]
gi|156217405|gb|EDO38322.1| predicted protein [Nematostella vectensis]
Length = 340
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 86/187 (45%), Positives = 125/187 (66%), Gaps = 2/187 (1%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS-LLINC 151
E+ ARLLFM+V+W R + F L RDQ++LL+E W+ELF++ QW++P +++ LL
Sbjct: 151 ESAARLLFMSVKWARNIPSFVNLPFRDQVVLLEEGWRELFIMGAIQWNLPLEVAPLLAAA 210
Query: 152 EKARERLPPDDVRVN-NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP 210
+ P + + +I+ +QEI +RFR L +E C+KA++LF P+ L D Q
Sbjct: 211 GMHVDNTPAEKIVATMADIRKLQEIGSRFRALQVCEAEFACLKAIVLFKPDLRDLRDPQQ 270
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
VE QDQAQ +LGDY++ +++ Q RFG+LLLMLPSLR VR TIE LFF++TIG + I+
Sbjct: 271 VECYQDQAQIMLGDYIKRQFAGQQVRFGKLLLMLPSLRLVRNKTIEELFFRQTIGSVAIE 330
Query: 271 RLLGDMY 277
LL DM+
Sbjct: 331 SLLCDMF 337
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 55/73 (75%)
Query: 288 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 347
L D Q VE QDQAQ +LGDY++ +++ Q RFG+LLLMLPSLR VR TIE LFF++TI
Sbjct: 265 LRDPQQVECYQDQAQIMLGDYIKRQFAGQQVRFGKLLLMLPSLRLVRNKTIEELFFRQTI 324
Query: 348 GDIPIQRLLGDMY 360
G + I+ LL DM+
Sbjct: 325 GSVAIESLLCDMF 337
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 117/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
LM E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 223 LMGIENICELAARMLFSAVEWARNIPFFPDLQVTDQVALLRLTWSELFVLNAAQCSMPVH 282
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 283 VAPLLAAAGLHASPMSADRVVAFMDHIRVFQEQVEKLKILHVDSAEYSCIKAIVLFTTDA 342
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QP RFG+LLL LPSLR V S IE+LFF
Sbjct: 343 CGLSDVAHVEGLQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSSVIEQLFFVR 402
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 403 LVGKTPIETLIRDMLLSGGSFSWP 426
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 260 FKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGDYVRGRYS 314
F+E + + I + Y+ K+ + GL D VE LQ+++QC L +YVR +Y
Sbjct: 312 FQEQVEKLKILHVDSAEYSCIKAIVLFTTDACGLSDVAHVEGLQEKSQCALEEYVRSQYP 371
Query: 315 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSY 366
QP RFG+LLL LPSLR V S IE+LFF +G PI+ L+ DM S+
Sbjct: 372 NQPNRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGGSF 423
>gi|221330285|ref|NP_611032.2| hormone receptor 51 [Drosophila melanogaster]
gi|220902230|gb|AAM68536.2| hormone receptor 51 [Drosophila melanogaster]
gi|291490761|gb|ADE06696.1| RT06950p1 [Drosophila melanogaster]
Length = 582
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 120/199 (60%), Gaps = 10/199 (5%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F LS RDQ++LL+ESW ELFLL+ QW IP D
Sbjct: 382 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 441
Query: 145 --LSLLINCEKARERLPPDDVRVNNE----IKLIQEILARFRQLSPDGSECGCMKAVILF 198
S+ +C D E ++ + EI +++ + D +E C+KA++LF
Sbjct: 442 ALFSVAEHCNNLENNANGDTCITKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 501
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
PET GL D +E LQDQA +L + + +++ Q RFGRLLLMLP LR + IE +
Sbjct: 502 RPETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESI 561
Query: 259 FFKETIGDIPIQRLLGDMY 277
+F+ TIG+ P++++L DMY
Sbjct: 562 YFQRTIGNTPMEKVLCDMY 580
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 52/77 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQA +L + + +++ Q RFGRLLLMLP LR + IE ++F
Sbjct: 504 ETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYF 563
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++++L DMY
Sbjct: 564 QRTIGNTPMEKVLCDMY 580
>gi|390335482|ref|XP_003724162.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
1 [Strongylocentrotus purpuratus]
gi|390335484|ref|XP_782295.3| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
2 [Strongylocentrotus purpuratus]
Length = 472
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 116/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 264 VMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRMCWSELFVLNASQCSMPLH 323
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 324 VAPLLAASGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSDA 383
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP RFG+LLL LPSLR V IE+LFF
Sbjct: 384 CGLSDAAHIEALQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSHVIEQLFFVR 443
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 444 LVGKTPIETLIRDMLLSGSSFSWP 467
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP RFG+LLL LPSLR V IE+LFF
Sbjct: 385 GLSDAAHIEALQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSHVIEQLFFVRL 444
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 445 VGKTPIETLIRDMLLSGSSFS 465
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 2/206 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 334 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 393
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 394 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 453
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D Q +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 454 CGLSDVQHIETLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 513
Query: 263 TIGDIPIQRLLGDMYTMEKSYETPGL 288
+G PI+ L+ DM S+ P L
Sbjct: 514 LVGKTPIETLIRDMLLSGNSFSWPYL 539
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D Q +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 455 GLSDVQHIETLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRL 514
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 515 VGKTPIETLIRDMLLSGNSF 534
>gi|301615499|ref|XP_002937209.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Xenopus (Silurana) tropicalis]
Length = 405
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 151/308 (49%), Gaps = 45/308 (14%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H + + PH P S L P ++V P
Sbjct: 107 VQHERGPRTSTIRKQVALYFRGHKEINGSTPHFP--SAALPAPTFFTTVS-----QLEPH 159
Query: 54 GLKSPPPPSHHHPSMFLATHQPPP----------HPGLLQILMSAEKCQETTARLLFMAV 103
L+ + + QP P H A TAR A
Sbjct: 160 NLELTAISTTPERQTLVGLAQPTPKVSLNYSTAGHYTYFLTFCQAFISSIATARXWEYA- 218
Query: 104 RWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV 163
W+ CL + + QL+LL+++W+ELF+L +AQW+IP D S L+ A + D+
Sbjct: 219 -WLMCLXTYHSYIVW-QLMLLEDAWRELFVLGIAQWAIPVDASTLL----AVSGMNSDNT 272
Query: 164 ------RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP--------GLVDAQ 209
++ +EI+ +QE+++RFRQL D +E C+K ++ F P +A
Sbjct: 273 ESQKLNKIISEIQALQEVVSRFRQLRLDATEFACLKCIVTFKAGVPPHSGSELRSFRNAA 332
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
+ LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI
Sbjct: 333 AIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIGNVPI 392
Query: 270 QRLLGDMY 277
RLL DMY
Sbjct: 393 TRLLSDMY 400
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 330 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIGN 389
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 390 VPITRLLSDMY 400
>gi|195155260|ref|XP_002018523.1| GL17753 [Drosophila persimilis]
gi|194114319|gb|EDW36362.1| GL17753 [Drosophila persimilis]
Length = 259
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 120/199 (60%), Gaps = 10/199 (5%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F LS RDQ++LL+ESW ELFLL+ QW IP D
Sbjct: 59 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 118
Query: 145 --LSLLINCEKARERLPPDDVRVNNE----IKLIQEILARFRQLSPDGSECGCMKAVILF 198
S+ +C D E ++ + EI +++ + D +E C+KA++LF
Sbjct: 119 ALFSVAEHCNNLENNANGDTCTTKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 178
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
PET GL D +E LQDQA +L + + +++ Q RFGRLLLMLP LR + IE +
Sbjct: 179 RPETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESI 238
Query: 259 FFKETIGDIPIQRLLGDMY 277
+F+ TIG+ P++++L DMY
Sbjct: 239 YFQRTIGNTPMEKVLCDMY 257
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 52/77 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQA +L + + +++ Q RFGRLLLMLP LR + IE ++F
Sbjct: 181 ETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYF 240
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++++L DMY
Sbjct: 241 QRTIGNTPMEKVLCDMY 257
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 119/196 (60%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF AV W R + F LS DQ+ LL+ WKELF+L++AQ + D+S L+N +
Sbjct: 299 ELAARLLFNAVEWSRNIPFFPNLSLTDQIALLRLCWKELFILNVAQCPMLIDVSHLLNSQ 358
Query: 153 KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
P +++++++E L + R + D +E C+KA+++F+ + PGL D Q +E
Sbjct: 359 MNIYASPEHMASFLDQVRILKEQLNKLRAMHVDPAEFACLKAIVVFSSDAPGLNDPQYIE 418
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQ++ L DY++ +Y QPTRFG+LLL PS+R + + IE+LFF +G PI+ L
Sbjct: 419 TLQEKTYFALEDYIKTQYPLQPTRFGKLLLRFPSIRIISATVIEQLFFVRLVGKTPIETL 478
Query: 273 LGDMYTMEKSYETPGL 288
+ D+ SY+ P L
Sbjct: 479 IRDILISGTSYDWPTL 494
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL D Q +E LQ++ L DY++ +Y QPTRFG+LLL PS+R + + IE+L
Sbjct: 405 SSDAPGLNDPQYIETLQEKTYFALEDYIKTQYPLQPTRFGKLLLRFPSIRIISATVIEQL 464
Query: 342 FFKETIGDIPIQRLLGDMYTMEKSY 366
FF +G PI+ L+ D+ SY
Sbjct: 465 FFVRLVGKTPIETLIRDILISGTSY 489
>gi|189237797|ref|XP_973111.2| PREDICTED: similar to PNR-like [Tribolium castaneum]
Length = 426
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 119/194 (61%), Gaps = 9/194 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L AE E+ A+LLF+A++W + + F LS RDQ +LL+ESW ELF+L AQW+ P D
Sbjct: 235 LFPAENVYESAAKLLFLAIKWAKSIPSFLQLSYRDQSILLEESWSELFVLTAAQWAFPVD 294
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
+LL++ + P + + + ++EI+ R L D +E C+KA++LF E
Sbjct: 295 ETLLVS-----NAIAPTSRHAALEEDARRLREIITRLTLLRVDHTEHACLKALVLFKSEC 349
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL + VE+LQDQ +L +Y R ++ RFG+LLL LP+++AV + +E L F++
Sbjct: 350 RGLCEPSHVELLQDQTHVMLNEYCNQRQTK--GRFGKLLLTLPAVQAVTRRGLEELIFRQ 407
Query: 263 TIGDIPIQRLLGDM 276
T+GD+ I RLL D+
Sbjct: 408 TVGDVAIDRLLTDL 421
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL + VE+LQDQ +L +Y R ++ RFG+LLL LP+++AV + +E L F
Sbjct: 348 ECRGLCEPSHVELLQDQTHVMLNEYCNQRQTK--GRFGKLLLTLPAVQAVTRRGLEELIF 405
Query: 344 KETIGDIPIQRLLGDM 359
++T+GD+ I RLL D+
Sbjct: 406 RQTVGDVAIDRLLTDL 421
>gi|403256259|ref|XP_003920806.1| PREDICTED: COUP transcription factor 1 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 281
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 117/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 71 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 130
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+ V++FT +
Sbjct: 131 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLSPVVVFTFDA 190
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 191 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 250
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 251 LVGKTPIETLIRDMLLSGSSFNWP 274
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 57/86 (66%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
+++ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+L
Sbjct: 187 TFDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQL 246
Query: 342 FFKETIGDIPIQRLLGDMYTMEKSYG 367
FF +G PI+ L+ DM S+
Sbjct: 247 FFVRLVGKTPIETLIRDMLLSGSSFN 272
>gi|194882843|ref|XP_001975519.1| GG20513 [Drosophila erecta]
gi|190658706|gb|EDV55919.1| GG20513 [Drosophila erecta]
Length = 630
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 120/199 (60%), Gaps = 10/199 (5%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F LS RDQ++LL+ESW ELFLL+ QW IP D
Sbjct: 430 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 489
Query: 145 --LSLLINCEKARERLPPDDVRVNNE----IKLIQEILARFRQLSPDGSECGCMKAVILF 198
S+ +C D E ++ + EI +++ + D +E C+KA++LF
Sbjct: 490 ALFSVAEHCNNLENNANGDTCITREELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 549
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
PET GL D +E LQDQA +L + + +++ Q RFGRLLLMLP LR + IE +
Sbjct: 550 RPETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESI 609
Query: 259 FFKETIGDIPIQRLLGDMY 277
+F+ TIG+ P++++L DMY
Sbjct: 610 YFQRTIGNTPMEKVLCDMY 628
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 52/77 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQA +L + + +++ Q RFGRLLLMLP LR + IE ++F
Sbjct: 552 ETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYF 611
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++++L DMY
Sbjct: 612 QRTIGNTPMEKVLCDMY 628
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 117/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 214 IMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 273
Query: 145 LSLLINCE--KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ LI A V+ + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 274 VAPLIAAAGLHASPMCADRVVQFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 333
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E +Q+++QC L +Y R +Y QPTRFG+LLL LPSLR V + IE+LFF
Sbjct: 334 CGLSDVAHIESIQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSAVIEQLFFVR 393
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 394 LVGKTPIETLIRDMLLSGSSFSWP 417
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E +Q+++QC L +Y R +Y QPTRFG+LLL LPSLR V + IE+LFF
Sbjct: 335 GLSDVAHIESIQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSAVIEQLFFVRL 394
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 395 VGKTPIETLIRDMLLSGSSFS 415
>gi|194754966|ref|XP_001959763.1| GF13031 [Drosophila ananassae]
gi|190621061|gb|EDV36585.1| GF13031 [Drosophila ananassae]
Length = 552
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 120/199 (60%), Gaps = 10/199 (5%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F LS RDQ++LL+ESW ELFLL+ QW IP D
Sbjct: 352 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 411
Query: 145 --LSLLINCEKARERLPPDDVRVNNE----IKLIQEILARFRQLSPDGSECGCMKAVILF 198
S+ +C D E ++ + EI +++ + D +E C+KA++LF
Sbjct: 412 ALFSVAEHCNNLENNANGDTCITKEELAADVRSLHEIFCKYKAVLVDPAEFACLKAIVLF 471
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
PET GL D +E LQDQA +L + + +++ Q RFGRLLLMLP LR + IE +
Sbjct: 472 RPETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIEAI 531
Query: 259 FFKETIGDIPIQRLLGDMY 277
+F+ TIG+ P++++L DMY
Sbjct: 532 YFQRTIGNTPMEKVLCDMY 550
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 52/77 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQA +L + + +++ Q RFGRLLLMLP LR + IE ++F
Sbjct: 474 ETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIEAIYF 533
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++++L DMY
Sbjct: 534 QRTIGNTPMEKVLCDMY 550
>gi|41351197|gb|AAH65651.1| Nr2f1b protein [Danio rerio]
Length = 388
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 116/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 180 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQSSMPLH 239
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I+ QE + + + L D +E C KA++LFT +
Sbjct: 240 VAPLLAAAGLHASPMSADRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKAIVLFTSDA 299
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +YVR +Y QPTRFG+LLL LP+LR V S IE+LFF
Sbjct: 300 CGLSDIPHIEGLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVR 359
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 360 LVGKTPIETLIRDMLLSGSSFNWP 383
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGDYVRGRY 313
FF+E + + ++ Y+ K+ + GL D +E LQ+++QC L +YVR +Y
Sbjct: 268 FFQEQVEKLKALQVDSAEYSCAKAIVLFTSDACGLSDIPHIEGLQEKSQCALEEYVRSQY 327
Query: 314 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYG 367
QPTRFG+LLL LP+LR V S IE+LFF +G PI+ L+ DM S+
Sbjct: 328 PNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFN 381
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 117/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 214 IMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 273
Query: 145 LSLLINCE--KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ LI A V+ + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 274 VAPLIAAAGLHASPMCADRVVQFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 333
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E +Q+++QC L +Y R +Y QPTRFG+LLL LPSLR V + IE+LFF
Sbjct: 334 CGLSDVAHIESIQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSAVIEQLFFVR 393
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G P++ L+ DM S+ P
Sbjct: 394 LVGKTPVETLIRDMLLSGSSFSWP 417
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E +Q+++QC L +Y R +Y QPTRFG+LLL LPSLR V + IE+LFF
Sbjct: 335 GLSDVAHIESIQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSAVIEQLFFVRL 394
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G P++ L+ DM S+
Sbjct: 395 VGKTPVETLIRDMLLSGSSFS 415
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 116/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 181 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQSSMPLH 240
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I+ QE + + + L D +E C KA++LFT +
Sbjct: 241 VAPLLAAAGLHASPMSADRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKAIVLFTSDA 300
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +YVR +Y QPTRFG+LLL LP+LR V S IE+LFF
Sbjct: 301 CGLSDIPHIEGLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVR 360
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 361 LVGKTPIETLIRDMLLSGSSFNWP 384
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGDYVRGRY 313
FF+E + + ++ Y+ K+ + GL D +E LQ+++QC L +YVR +Y
Sbjct: 269 FFQEQVEKLKALQVDSAEYSCAKAIVLFTSDACGLSDIPHIEGLQEKSQCALEEYVRSQY 328
Query: 314 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYG 367
QPTRFG+LLL LP+LR V S IE+LFF +G PI+ L+ DM S+
Sbjct: 329 PNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFN 382
>gi|259013249|ref|NP_001158369.1| transcription factor COUP1 [Saccoglossus kowalevskii]
gi|196123801|gb|ACG70189.1| COUP protein [Saccoglossus kowalevskii]
Length = 435
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 116/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 227 MMGIDGICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRMVWSELFVLNASQCSMPLH 286
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 287 VAPLLAASGLHTSPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 346
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP RFG+LLL LPSLR V IE+LFF
Sbjct: 347 CGLSDAAHIENLQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSQVIEQLFFVR 406
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 407 LVGKTPIETLIRDMLLSGSSFNWP 430
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP RFG+LLL LPSLR V IE+LFF
Sbjct: 345 DACGLSDAAHIENLQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSQVIEQLFF 404
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 405 VRLVGKTPIETLIRDMLLSGSSFN 428
>gi|347968053|ref|XP_312394.4| AGAP002544-PA [Anopheles gambiae str. PEST]
gi|333468184|gb|EAA07520.4| AGAP002544-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 116/206 (56%), Gaps = 2/206 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 307 IMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 366
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 367 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 426
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 427 CGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 486
Query: 263 TIGDIPIQRLLGDMYTMEKSYETPGL 288
+G PI+ L+ DM S+ P L
Sbjct: 487 LVGKTPIETLIRDMLLSGSSFSWPYL 512
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 428 GLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRL 487
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 488 VGKTPIETLIRDMLLSGSSF 507
>gi|156389440|ref|XP_001634999.1| predicted protein [Nematostella vectensis]
gi|156222088|gb|EDO42936.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 164/298 (55%), Gaps = 31/298 (10%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEP-HNPHHSPDLLPPNGI---SSVKIPPTVLYPPSGLK 56
VQHER PR +I Q+S+ +P H S + + + I S + V SG +
Sbjct: 74 VQHERAPRTSQIR----QNSQSKPLKRKHISIENMSADQIKTKSDKRAYQQVDSRSSGFE 129
Query: 57 SPPPPSHHH---PSMFLATH---QPPPHP-GLLQILMSAEKCQETTARLLFMAVRWVRCL 109
P + P + +A++ P PH G+ + M + E+ R+L+M V+WVR +
Sbjct: 130 KPIDDMENVKCLPPVSIASNLTISPTPHSVGIPVVYM--DMMYESAIRVLYMTVKWVRNI 187
Query: 110 APFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE----------KARERLP 159
F L RDQ +L++ESW ELF+L L+QW + DLS L++ +R P
Sbjct: 188 PTFLDLPFRDQAILIEESWSELFILSLSQWDMAVDLSSLVSAAYPQQMGLSPGHKSDRTP 247
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
++I+ +Q +++R R S D +E C+KA++LF P+ GL VE LQDQAQ
Sbjct: 248 GS----MSDIRNLQTVVSRLRTASVDQTEYACLKAIVLFKPDIRGLRLWSHVEQLQDQAQ 303
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
C+LG+Y Y Q +RFG+LLL LPSL+++ IERLFF T+ +IP++RLL DM+
Sbjct: 304 CMLGEYELQHYPDQVSRFGKLLLSLPSLKSIPPKAIERLFFSGTLDNIPMERLLADMF 361
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 50/67 (74%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 353
VE LQDQAQC+LG+Y Y Q +RFG+LLL LPSL+++ IERLFF T+ +IP++
Sbjct: 295 VEQLQDQAQCMLGEYELQHYPDQVSRFGKLLLSLPSLKSIPPKAIERLFFSGTLDNIPME 354
Query: 354 RLLGDMY 360
RLL DM+
Sbjct: 355 RLLADMF 361
>gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogaster]
gi|220947910|gb|ACL86498.1| svp-PC [synthetic construct]
gi|220957212|gb|ACL91149.1| svp-PC [synthetic construct]
Length = 543
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 2/206 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 335 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 394
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 395 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 454
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 455 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 514
Query: 263 TIGDIPIQRLLGDMYTMEKSYETPGL 288
+G PI+ L+ DM S+ P L
Sbjct: 515 LVGKTPIETLIRDMLLSGNSFSWPYL 540
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 456 GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRL 515
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 516 VGKTPIETLIRDMLLSGNSF 535
>gi|194901808|ref|XP_001980443.1| GG18706 [Drosophila erecta]
gi|195500393|ref|XP_002097354.1| GE26169 [Drosophila yakuba]
gi|190652146|gb|EDV49401.1| GG18706 [Drosophila erecta]
gi|194183455|gb|EDW97066.1| GE26169 [Drosophila yakuba]
Length = 543
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 2/206 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 335 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 394
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 395 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 454
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 455 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 514
Query: 263 TIGDIPIQRLLGDMYTMEKSYETPGL 288
+G PI+ L+ DM S+ P L
Sbjct: 515 LVGKTPIETLIRDMLLSGNSFSWPYL 540
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 456 GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRL 515
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 516 VGKTPIETLIRDMLLSGNSF 535
>gi|17737921|ref|NP_524325.1| seven up, isoform B [Drosophila melanogaster]
gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Steroid receptor seven-up, isoforms B/C; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoforms B/C
gi|158519|gb|AAA62770.1| seven-up protein type 1 [Drosophila melanogaster]
gi|7299588|gb|AAF54773.1| seven up, isoform B [Drosophila melanogaster]
Length = 543
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 2/206 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 335 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 394
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 395 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 454
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 455 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 514
Query: 263 TIGDIPIQRLLGDMYTMEKSYETPGL 288
+G PI+ L+ DM S+ P L
Sbjct: 515 LVGKTPIETLIRDMLLSGNSFSWPYL 540
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 456 GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRL 515
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 516 VGKTPIETLIRDMLLSGNSF 535
>gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aedes aegypti]
Length = 493
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 115/206 (55%), Gaps = 2/206 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 285 IMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 344
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 345 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 404
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+ FF
Sbjct: 405 CGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQFFFVR 464
Query: 263 TIGDIPIQRLLGDMYTMEKSYETPGL 288
+G PI+ L+ DM S+ P L
Sbjct: 465 LVGKTPIETLIRDMLLSGSSFSWPYL 490
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 50/80 (62%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+ FF
Sbjct: 406 GLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQFFFVRL 465
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 466 VGKTPIETLIRDMLLSGSSF 485
>gi|442618705|ref|NP_001262499.1| seven up, isoform E [Drosophila melanogaster]
gi|440217344|gb|AGB95881.1| seven up, isoform E [Drosophila melanogaster]
Length = 554
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 2/206 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 335 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 394
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 395 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 454
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 455 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 514
Query: 263 TIGDIPIQRLLGDMYTMEKSYETPGL 288
+G PI+ L+ DM S+ P L
Sbjct: 515 LVGKTPIETLIRDMLLSGNSFSWPYL 540
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 456 GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRL 515
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 516 VGKTPIETLIRDMLLSGNSF 535
>gi|332023687|gb|EGI63911.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 730
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 129/228 (56%), Gaps = 17/228 (7%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
T PP P L SAE ET+ARLLFMAV+W + L F L RDQ++LL+E W EL
Sbjct: 387 TQLPPVLPSLYSP-ASAETVYETSARLLFMAVKWAKNLPSFAGLPFRDQVILLEEVWSEL 445
Query: 132 FLLHLAQWSIPWDLS-LLINCEKARERLPP---------------DDVRVNNEIKLIQEI 175
FLL+ QW +P + S L E L P +V +++ + +
Sbjct: 446 FLLNAVQWCLPLESSPLFSAAELTALTLSPHPHPHSGLHLQTTTGKPSQVAADVRHLHDT 505
Query: 176 LARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 235
L R++ + D +E CMKA++LF PET GL D+ +E LQDQAQ +LG + R + P
Sbjct: 506 LQRYKAVMVDPAEFACMKAIVLFRPETRGLKDSSQIENLQDQAQLMLGHHARAQQPNSPA 565
Query: 236 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSY 283
RFGRLLL+LP LR V + +E ++F TIG+ P++++L D+ E Y
Sbjct: 566 RFGRLLLLLPLLRTVPAARVELIYFHRTIGNTPMEKVLCDISGNEFRY 613
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 54/83 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D+ +E LQDQAQ +LG + R + P RFGRLLL+LP LR V + +E ++F
Sbjct: 531 ETRGLKDSSQIENLQDQAQLMLGHHARAQQPNSPARFGRLLLLLPLLRTVPAARVELIYF 590
Query: 344 KETIGDIPIQRLLGDMYTMEKSY 366
TIG+ P++++L D+ E Y
Sbjct: 591 HRTIGNTPMEKVLCDISGNEFRY 613
>gi|440907586|gb|ELR57717.1| COUP transcription factor 1, partial [Bos grunniens mutus]
Length = 368
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 118/204 (57%), Gaps = 3/204 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 159 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 218
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++L T +
Sbjct: 219 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL-TADA 277
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 278 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 337
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 338 LVGKTPIETLIRDMLLSGSSFNWP 361
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 55/83 (66%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 276 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 335
Query: 344 KETIGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 336 VRLVGKTPIETLIRDMLLSGSSF 358
>gi|195486253|ref|XP_002091427.1| GE13645 [Drosophila yakuba]
gi|194177528|gb|EDW91139.1| GE13645 [Drosophila yakuba]
Length = 654
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 118/199 (59%), Gaps = 15/199 (7%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F LS RDQ++LL+ESW ELFLL+ QW IP D
Sbjct: 459 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 518
Query: 145 --LSLLINCEKARERLPPDDVRVNNE----IKLIQEILARFRQLSPDGSECGCMKAVILF 198
S+ +C D E ++ + EI +++ + D +E C+KA++LF
Sbjct: 519 ALFSVAEHCNNLENNANGDTCTTKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 578
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
PET GL D +E LQDQA + + +++ Q RFGRLLLMLP LR + IE +
Sbjct: 579 RPETRGLKDPAQIENLQDQAH-----HTKTQFTAQIARFGRLLLMLPLLRIISSHKIESI 633
Query: 259 FFKETIGDIPIQRLLGDMY 277
+F+ TIG+ P++++L DMY
Sbjct: 634 YFQRTIGNTPMEKVLCDMY 652
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQA + + +++ Q RFGRLLLMLP LR + IE ++F
Sbjct: 581 ETRGLKDPAQIENLQDQAH-----HTKTQFTAQIARFGRLLLMLPLLRIISSHKIESIYF 635
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++++L DMY
Sbjct: 636 QRTIGNTPMEKVLCDMY 652
>gi|24646230|ref|NP_731682.1| seven up, isoform C [Drosophila melanogaster]
gi|18447096|gb|AAL68139.1| AT29920p [Drosophila melanogaster]
gi|23171092|gb|AAF54774.2| seven up, isoform C [Drosophila melanogaster]
gi|220942234|gb|ACL83660.1| svp-PC [synthetic construct]
gi|220952448|gb|ACL88767.1| svp-PC [synthetic construct]
Length = 281
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 2/206 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 73 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 132
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 133 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 192
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 193 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 252
Query: 263 TIGDIPIQRLLGDMYTMEKSYETPGL 288
+G PI+ L+ DM S+ P L
Sbjct: 253 LVGKTPIETLIRDMLLSGNSFSWPYL 278
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 194 GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRL 253
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 254 VGKTPIETLIRDMLLSGNSF 273
>gi|340729306|ref|XP_003402945.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Bombus
terrestris]
Length = 400
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 192 IMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 251
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 252 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 311
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 312 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 371
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 372 LVGKTPIETLIRDMLLSGSSFNWP 395
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 52/84 (61%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 310 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 369
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 370 VRLVGKTPIETLIRDMLLSGSSFN 393
>gi|158298860|ref|XP_319009.4| AGAP009890-PA [Anopheles gambiae str. PEST]
gi|157014089|gb|EAA14402.4| AGAP009890-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/195 (43%), Positives = 122/195 (62%), Gaps = 11/195 (5%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F +L+ RDQ++LL+ESW ELFLL+ QW +P D
Sbjct: 335 ETIYETSARLLFMAVKWAKNLPSFASLTFRDQVILLEESWAELFLLNAIQWCMPIDTTAC 394
Query: 145 --LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
SL +C A ++ +++++ + L RF+ + D +E CMKA++LF E
Sbjct: 395 TLFSLNEHCNSANNSGFFKPGQLAQDLRILNDTLCRFKSVLVDPAEFACMKAIVLFRSEA 454
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQDQAQ + R ++ Q RFGRLLLMLP LRAV IE ++F++
Sbjct: 455 RGLKDPVQIENLQDQAQ-----HSRTQFPGQIARFGRLLLMLPLLRAVNSHKIESIYFQK 509
Query: 263 TIGDIPIQRLLGDMY 277
TIG+ P++++L DMY
Sbjct: 510 TIGNTPMEKVLCDMY 524
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL D +E LQDQAQ + R ++ Q RFGRLLLMLP LRAV IE ++F
Sbjct: 453 EARGLKDPVQIENLQDQAQ-----HSRTQFPGQIARFGRLLLMLPLLRAVNSHKIESIYF 507
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P++++L DMY
Sbjct: 508 QKTIGNTPMEKVLCDMY 524
>gi|383855696|ref|XP_003703346.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Megachile
rotundata]
Length = 394
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 186 IMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 245
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 246 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 305
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 306 CGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 365
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 366 LVGKTPIETLIRDMLLSGSSFNWP 389
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 52/84 (61%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 304 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 363
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 364 VRLVGKTPIETLIRDMLLSGSSFN 387
>gi|328791488|ref|XP_392402.3| PREDICTED: steroid receptor seven-up, isoforms B/C, partial [Apis
mellifera]
Length = 344
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 136 IMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 195
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 196 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 255
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 256 CGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 315
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 316 LVGKTPIETLIRDMLLSGSSFNWP 339
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 52/84 (61%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 254 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 313
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 314 VRLVGKTPIETLIRDMLLSGSSFN 337
>gi|350416858|ref|XP_003491138.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like, partial
[Bombus impatiens]
Length = 324
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 116 IMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 175
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 176 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 235
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 236 CGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 295
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 296 LVGKTPIETLIRDMLLSGSSFNWP 319
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 52/84 (61%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 234 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 293
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 294 VRLVGKTPIETLIRDMLLSGSSFN 317
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 112/194 (57%), Gaps = 2/194 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 333 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 392
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 393 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 452
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 453 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 512
Query: 263 TIGDIPIQRLLGDM 276
+G PI+ L+ DM
Sbjct: 513 LVGKTPIETLIRDM 526
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 451 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 510
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 511 VRLVGKTPIETLIRDM 526
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 112/194 (57%), Gaps = 2/194 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 340 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 399
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 400 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 459
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 460 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 519
Query: 263 TIGDIPIQRLLGDM 276
+G PI+ L+ DM
Sbjct: 520 LVGKTPIETLIRDM 533
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 461 GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRL 520
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 521 VGKTPIETLIRDM 533
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 112/194 (57%), Gaps = 2/194 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 331 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 390
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 391 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 450
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 451 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 510
Query: 263 TIGDIPIQRLLGDM 276
+G PI+ L+ DM
Sbjct: 511 LVGKTPIETLIRDM 524
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 449 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 509 VRLVGKTPIETLIRDM 524
>gi|321477464|gb|EFX88423.1| hypothetical protein DAPPUDRAFT_311322 [Daphnia pulex]
Length = 364
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 156 IMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 215
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 216 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 275
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y+ QP RFG+LLL LPSLR V IE+LFF
Sbjct: 276 CGLSDVGHIESLQEKSQCALEEYCRTQYANQPVRFGKLLLRLPSLRTVSSQVIEQLFFVR 335
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 336 LVGKTPIETLIRDMLLSGSSFNWP 359
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y+ QP RFG+LLL LPSLR V IE+LFF
Sbjct: 274 DACGLSDVGHIESLQEKSQCALEEYCRTQYANQPVRFGKLLLRLPSLRTVSSQVIEQLFF 333
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 334 VRLVGKTPIETLIRDMLLSGSSFN 357
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 112/194 (57%), Gaps = 2/194 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 330 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 389
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 390 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 449
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 450 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 509
Query: 263 TIGDIPIQRLLGDM 276
+G PI+ L+ DM
Sbjct: 510 LVGKTPIETLIRDM 523
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 448 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 507
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 508 VRLVGKTPIETLIRDM 523
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 112/194 (57%), Gaps = 2/194 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 331 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 390
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 391 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 450
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 451 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 510
Query: 263 TIGDIPIQRLLGDM 276
+G PI+ L+ DM
Sbjct: 511 LVGKTPIETLIRDM 524
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 449 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 509 VRLVGKTPIETLIRDM 524
>gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori]
Length = 421
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 213 VMGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 272
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 273 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 332
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 333 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 392
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM ++ P
Sbjct: 393 LVGKTPIETLIRDMLLSGNTFSWP 416
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 334 GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRL 393
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM ++
Sbjct: 394 VGKTPIETLIRDMLLSGNTF 413
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 112/194 (57%), Gaps = 2/194 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 331 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 390
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 391 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 450
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 451 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 510
Query: 263 TIGDIPIQRLLGDM 276
+G PI+ L+ DM
Sbjct: 511 LVGKTPIETLIRDM 524
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 449 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 509 VRLVGKTPIETLIRDM 524
>gi|193598915|ref|XP_001944021.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Acyrthosiphon pisum]
Length = 446
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 114/204 (55%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 238 IMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 297
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 298 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDAAEYSCLKAIVLFTTDA 357
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QP RFG+LLL LPSLR V IE+LFF
Sbjct: 358 CGLSDVAHIESLQEKSQCALEEYCRTQYPNQPIRFGKLLLRLPSLRTVSSQVIEQLFFVR 417
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 418 LVGKTPIETLIRDMLLSGSSFSWP 441
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y QP RFG+LLL LPSLR V IE+LFF
Sbjct: 356 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPIRFGKLLLRLPSLRTVSSQVIEQLFF 415
Query: 344 KETIGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 416 VRLVGKTPIETLIRDMLLSGSSF 438
>gi|195571509|ref|XP_002103745.1| GD18809 [Drosophila simulans]
gi|194199672|gb|EDX13248.1| GD18809 [Drosophila simulans]
Length = 680
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 112/194 (57%), Gaps = 2/194 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 335 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 394
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 395 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 454
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 455 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 514
Query: 263 TIGDIPIQRLLGDM 276
+G PI+ L+ DM
Sbjct: 515 LVGKTPIETLIRDM 528
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 453 DACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 512
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 513 VRLVGKTPIETLIRDM 528
>gi|357620179|gb|EHJ72470.1| hypothetical protein KGM_05607 [Danaus plexippus]
Length = 254
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 114/191 (59%), Gaps = 10/191 (5%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDL--S 146
E ET ARLLFMAV+W R L F L+ RDQ+ LL+E W ELFLL+ QW P D S
Sbjct: 70 ESAAETAARLLFMAVKWARNLPSFAGLAFRDQVTLLEEGWSELFLLNAVQWCAPLDAAAS 129
Query: 147 LLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
L E D + ++ +++R+R + D +E CMKA++LF PET GL
Sbjct: 130 ALFGTEH--------DTGAGECRRRLRAVVSRYRSVLVDPAEFACMKAIVLFKPETRGLK 181
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D +E LQDQAQ +L + R + P RFGRLLL+LP LR V +E+ FF +TIG+
Sbjct: 182 DPLQIENLQDQAQVMLMTHTRTAHGTAPARFGRLLLLLPLLRLVTPQQLEKEFFAKTIGE 241
Query: 267 IPIQRLLGDMY 277
P++++L DMY
Sbjct: 242 TPMEKVLADMY 252
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQAQ +L + R + P RFGRLLL+LP LR V +E+ FF
Sbjct: 176 ETRGLKDPLQIENLQDQAQVMLMTHTRTAHGTAPARFGRLLLLLPLLRLVTPQQLEKEFF 235
Query: 344 KETIGDIPIQRLLGDMY 360
+TIG+ P++++L DMY
Sbjct: 236 AKTIGETPMEKVLADMY 252
>gi|195426545|ref|XP_002061388.1| GK20892 [Drosophila willistoni]
gi|194157473|gb|EDW72374.1| GK20892 [Drosophila willistoni]
Length = 573
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 123/208 (59%), Gaps = 26/208 (12%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F LS RDQ++LL+ESW ELFLL+ QW IP D
Sbjct: 371 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 430
Query: 145 --LSLLINCEK-------------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSEC 189
S+ +C ++E L D ++ + EI +++ + D +E
Sbjct: 431 ALFSVAEHCNNLENNNNANGETCVSKEELAAD-------VRTLHEIFCKYKAVLVDPAEF 483
Query: 190 GCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRA 249
C+KA++LF PET GL D +E LQDQA +L + + +++ Q RFGRLLLMLP LR
Sbjct: 484 ACLKAIVLFRPETRGLKDPAQIENLQDQAHVMLSQHTKTQFAAQIARFGRLLLMLPLLRM 543
Query: 250 VRQSTIERLFFKETIGDIPIQRLLGDMY 277
+ IE ++F+ TIG+ P++++L DMY
Sbjct: 544 INSHKIESIYFQRTIGNTPMEKVLCDMY 571
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 52/77 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQA +L + + +++ Q RFGRLLLMLP LR + IE ++F
Sbjct: 495 ETRGLKDPAQIENLQDQAHVMLSQHTKTQFAAQIARFGRLLLMLPLLRMINSHKIESIYF 554
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++++L DMY
Sbjct: 555 QRTIGNTPMEKVLCDMY 571
>gi|307204825|gb|EFN83383.1| Steroid receptor seven-up, isoforms B/C [Harpegnathos saltator]
Length = 458
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 112/194 (57%), Gaps = 2/194 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 264 IMGIDNMCELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 323
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ LI D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 324 VAPLIAAAGLHATPMAADRVVAFMDHIRIFQEQVEKLKALHVDTAEYSCLKAIVLFTTDA 383
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 384 CGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 443
Query: 263 TIGDIPIQRLLGDM 276
+G PI+ L+ DM
Sbjct: 444 LVGKTPIETLIRDM 457
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 382 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFF 441
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 442 VRLVGKTPIETLIRDM 457
>gi|84617148|emb|CAH59197.1| seven-up protein [Cupiennius salei]
Length = 353
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 145 IMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 204
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 205 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALQVDAAEYSCLKAIVLFTTDA 264
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y +PTRFG+LLL LPSLR V IE+LFF
Sbjct: 265 CGLSDVAHIESLQEKSQCALEEYCRTQYPNRPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 324
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 325 LVGKTPIETLIRDMLLSGSSFNWP 348
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D +E LQ+++QC L +Y R +Y +PTRFG+LLL LPSLR V IE+LFF
Sbjct: 263 DACGLSDVAHIESLQEKSQCALEEYCRTQYPNRPTRFGKLLLRLPSLRTVSSQVIEQLFF 322
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 323 VRLVGKTPIETLIRDMLLSGSSFN 346
>gi|403182505|gb|EAT46025.2| AAEL002765-PA, partial [Aedes aegypti]
Length = 274
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 116/207 (56%), Gaps = 3/207 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 65 IMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 124
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFT-PE 201
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 125 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTAD 184
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 261
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 185 ACGLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFV 244
Query: 262 ETIGDIPIQRLLGDMYTMEKSYETPGL 288
+G PI+ L+ DM S+ P L
Sbjct: 245 RLVGKTPIETLIRDMLLSGSSFSWPYL 271
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 51/81 (62%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 187 GLSDVAHIESLQEKSQCALEEYCRSQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRL 246
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 247 VGKTPIETLIRDMLLSGSSFS 267
>gi|76364250|gb|ABA41639.1| COUP transcription factor-like protein [Strongylocentrotus
purpuratus]
Length = 336
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 116/205 (56%), Gaps = 3/205 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 127 VMGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRMCWSELFVLNASQCSMPLH 186
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-E 201
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 187 VAPLLAASGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSTD 246
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 261
GL DA +E LQ+++QC L +YVR +Y QP RFG+LLL LPSLR V IE+LFF
Sbjct: 247 ACGLSDAAHIEALQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSHVIEQLFFV 306
Query: 262 ETIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 307 RLVGKTPIETLIRDMLLSGSSFSWP 331
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 54/86 (62%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + GL DA +E LQ+++QC L +YVR +Y QP RFG+LLL LPSLR V IE+L
Sbjct: 244 STDACGLSDAAHIEALQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRTVSSHVIEQL 303
Query: 342 FFKETIGDIPIQRLLGDMYTMEKSYG 367
FF +G PI+ L+ DM S+
Sbjct: 304 FFVRLVGKTPIETLIRDMLLSGSSFS 329
>gi|313233664|emb|CBY09835.1| unnamed protein product [Oikopleura dioica]
Length = 490
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 114/193 (59%), Gaps = 3/193 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
LM E E ARLLF AV W R + F L DQ+ +L+ W ELF+L+ AQ +P
Sbjct: 230 LMGVESVCELAARLLFCAVEWARQIPFFPELQITDQVNMLKHCWPELFVLNAAQSHMPLH 289
Query: 145 LSLLINCEKARERLPPDDV-RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
++ L+ A D V +++++ QE + + + L D +E C+KA++L +P+ P
Sbjct: 290 VAPLL--AAAGFHNSADKVMNFMDQVRVFQEQVEKLKSLHIDSAEFTCLKAIVLLSPDAP 347
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 263
G+ D VE +Q++AQC L +Y R +Y QP+RFGRLLL LPS+R V IE+LFF
Sbjct: 348 GVSDPAHVESIQEKAQCALEEYTRCQYPGQPSRFGRLLLRLPSVRTVSPHVIEQLFFVRL 407
Query: 264 IGDIPIQRLLGDM 276
+G PI+ L+ DM
Sbjct: 408 VGKTPIETLIRDM 420
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ PG+ D VE +Q++AQC L +Y R +Y QP+RFGRLLL LPS+R V IE+LFF
Sbjct: 345 DAPGVSDPAHVESIQEKAQCALEEYTRCQYPGQPSRFGRLLLRLPSVRTVSPHVIEQLFF 404
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 405 VRLVGKTPIETLIRDM 420
>gi|221124181|ref|XP_002154441.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Hydra
magnipapillata]
Length = 438
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 124/206 (60%), Gaps = 6/206 (2%)
Query: 74 QPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFL 133
Q P+ + +++K ++ LFM+V W + + F L DQ LLL+ESW ELF+
Sbjct: 230 QNIPNSYTMSSKFNSDKLYHSSLHFLFMSVSWAQSIPKFLELPFSDQALLLEESWSELFI 289
Query: 134 LHLAQWSIPWDLSLL---INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECG 190
L + Q+S P +L +L I E A + +D++ E++ +Q+I+ RF+ L+ D +E
Sbjct: 290 LSMIQYSEPIELGVLLYSIGAENASSQKGSNDIQ---ELQTLQQIVYRFQNLAIDCTEFA 346
Query: 191 CMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV 250
C+KA +LF P+ GL Q +E LQD AQ +LG+YVR + + P RFG+LLL+LPSLRA+
Sbjct: 347 CLKATVLFKPDLEGLRCGQYIENLQDYAQSMLGEYVRNTHPQTPARFGKLLLLLPSLRAI 406
Query: 251 RQSTIERLFFKETIGDIPIQRLLGDM 276
T+ +LF K PI ++L DM
Sbjct: 407 GAKTLIKLFLKGDTDQSPIDKVLHDM 432
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 48/73 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL Q +E LQD AQ +LG+YVR + + P RFG+LLL+LPSLRA+ T+ +LF K
Sbjct: 360 GLRCGQYIENLQDYAQSMLGEYVRNTHPQTPARFGKLLLLLPSLRAIGAKTLIKLFLKGD 419
Query: 347 IGDIPIQRLLGDM 359
PI ++L DM
Sbjct: 420 TDQSPIDKVLHDM 432
>gi|195119854|ref|XP_002004444.1| GI19610 [Drosophila mojavensis]
gi|193909512|gb|EDW08379.1| GI19610 [Drosophila mojavensis]
Length = 589
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 119/199 (59%), Gaps = 15/199 (7%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F LS RDQ++LL+ESW ELFLL+ QW IP D
Sbjct: 394 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 453
Query: 145 --LSLLINCEKARERLPPDDVRVNNE----IKLIQEILARFRQLSPDGSECGCMKAVILF 198
S+ +C D+ E ++ + EI +++ + D +E C+KA++LF
Sbjct: 454 ALFSVAEHCNNLENNANTDNCVSKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 513
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
PET GL D +E LQDQA + + +++ Q RFGRLLLMLP LR + IE +
Sbjct: 514 RPETRGLKDPAQIENLQDQAH-----HTKTQFAAQIARFGRLLLMLPLLRMINSHKIESI 568
Query: 259 FFKETIGDIPIQRLLGDMY 277
FF+ TIG+ P++++L DMY
Sbjct: 569 FFQRTIGNTPMEKVLCDMY 587
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQA + + +++ Q RFGRLLLMLP LR + IE +FF
Sbjct: 516 ETRGLKDPAQIENLQDQAH-----HTKTQFAAQIARFGRLLLMLPLLRMINSHKIESIFF 570
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++++L DMY
Sbjct: 571 QRTIGNTPMEKVLCDMY 587
>gi|270008322|gb|EFA04770.1| hypothetical protein TcasGA2_TC030676 [Tribolium castaneum]
Length = 357
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 113/192 (58%), Gaps = 20/192 (10%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L AE E+ A+LLF+A++W + + F LS RDQ +LL+ESW ELF+L AQW+ P D
Sbjct: 181 LFPAENVYESAAKLLFLAIKWAKSIPSFLQLSYRDQSILLEESWSELFVLTAAQWAFPVD 240
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
E L D R ++EI+ R L D +E C+KA++LF E G
Sbjct: 241 -----------ETLEEDARR-------LREIITRLTLLRVDHTEHACLKALVLFKSECRG 282
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + VE+LQDQ +L +Y R ++ RFG+LLL LP+++AV + +E L F++T+
Sbjct: 283 LCEPSHVELLQDQTHVMLNEYCNQRQTK--GRFGKLLLTLPAVQAVTRRGLEELIFRQTV 340
Query: 265 GDIPIQRLLGDM 276
GD+ I RLL D+
Sbjct: 341 GDVAIDRLLTDL 352
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL + VE+LQDQ +L +Y R ++ RFG+LLL LP+++AV + +E L F
Sbjct: 279 ECRGLCEPSHVELLQDQTHVMLNEYCNQRQTK--GRFGKLLLTLPAVQAVTRRGLEELIF 336
Query: 344 KETIGDIPIQRLLGDM 359
++T+GD+ I RLL D+
Sbjct: 337 RQTVGDVAIDRLLTDL 352
>gi|344242733|gb|EGV98836.1| Nuclear receptor subfamily 2 group E member 1 [Cricetulus griseus]
Length = 323
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 144/297 (48%), Gaps = 73/297 (24%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +D+ H P S +P
Sbjct: 75 VQHERGPRTSTIRKQVALYFRGHKEDNGAAAHFP-------------SAALPA------- 114
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQ 113
P+ F A Q PH GL +SA ++T L
Sbjct: 115 ------------PAFFTAVTQLEPH-GLELAAVSATPERQTLVSLA-------------- 147
Query: 114 TLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV------RVNN 167
+L+LL+++W+ELF+L +AQW+IP D + L+ A + D+ ++ +
Sbjct: 148 --QPTPKLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNSDNTDSQKLNKIIS 201
Query: 168 EIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVEMLQDQAQC 220
EI+ +QE++ARFRQL D +E C+K ++ F E +A + LQD+AQ
Sbjct: 202 EIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQL 261
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RLL DMY
Sbjct: 262 TLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMY 318
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 248 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 307
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 308 VPITRLLSDMY 318
>gi|195027479|ref|XP_001986610.1| GH20427 [Drosophila grimshawi]
gi|193902610|gb|EDW01477.1| GH20427 [Drosophila grimshawi]
Length = 281
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 119/199 (59%), Gaps = 15/199 (7%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F LS RDQ++LL+ESW ELFLL+ QW IP +
Sbjct: 86 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLEPTGC 145
Query: 145 --LSLLINCEKARERLPPDDVRVNNE----IKLIQEILARFRQLSPDGSECGCMKAVILF 198
S+ +C D+ E ++ + EI +++ + D +E C+KA++LF
Sbjct: 146 ALFSVAEHCNNLENNANGDNCVTKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 205
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
PET GL D +E LQDQA + + +++ Q RFGRLLLMLP LR + IE +
Sbjct: 206 RPETRGLKDPAQIENLQDQAH-----HTKTQFTAQIARFGRLLLMLPLLRMINSHKIESI 260
Query: 259 FFKETIGDIPIQRLLGDMY 277
FF+ TIG+ P++++L DMY
Sbjct: 261 FFQRTIGNTPMEKVLCDMY 279
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQA + + +++ Q RFGRLLLMLP LR + IE +FF
Sbjct: 208 ETRGLKDPAQIENLQDQAH-----HTKTQFTAQIARFGRLLLMLPLLRMINSHKIESIFF 262
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++++L DMY
Sbjct: 263 QRTIGNTPMEKVLCDMY 279
>gi|195583620|ref|XP_002081615.1| GD11109 [Drosophila simulans]
gi|194193624|gb|EDX07200.1| GD11109 [Drosophila simulans]
Length = 414
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 118/199 (59%), Gaps = 15/199 (7%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F LS RDQ++LL+ESW ELFLL+ QW IP D
Sbjct: 219 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 278
Query: 145 --LSLLINCEKARERLPPDDVRVNNE----IKLIQEILARFRQLSPDGSECGCMKAVILF 198
S+ +C D E ++ + EI +++ + D +E C+KA++LF
Sbjct: 279 ALFSVAEHCNNLENNANGDTCITKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 338
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
PET GL D +E LQDQA + + +++ Q RFGRLLLMLP LR + IE +
Sbjct: 339 RPETRGLKDPAQIENLQDQAH-----HTKTQFTAQIARFGRLLLMLPLLRMISSHKIESI 393
Query: 259 FFKETIGDIPIQRLLGDMY 277
+F+ TIG+ P++++L DMY
Sbjct: 394 YFQRTIGNTPMEKVLCDMY 412
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQA + + +++ Q RFGRLLLMLP LR + IE ++F
Sbjct: 341 ETRGLKDPAQIENLQDQAH-----HTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYF 395
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++++L DMY
Sbjct: 396 QRTIGNTPMEKVLCDMY 412
>gi|260828845|ref|XP_002609373.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
gi|229294729|gb|EEN65383.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
Length = 336
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/215 (41%), Positives = 129/215 (60%), Gaps = 19/215 (8%)
Query: 73 HQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELF 132
H P PG +A+ ET ARLLF+ V+W R + F L RDQ +LL+E+W ELF
Sbjct: 128 HAQFPFPG------AADNMYETAARLLFIVVKWARNIPSFLQLPFRDQAILLEEAWNELF 181
Query: 133 LLHLAQWSIPWDLSLLINCEKARERLPPDDVRV----------NNEIKLIQEILARFRQL 182
+L AQW++P D L+ A P RV +I+ ++++ +RF++
Sbjct: 182 VLSAAQWAMPIDPGSLLT---AATSSPASADRVIQSSEQSSLLMADIRGLRDVTSRFQEA 238
Query: 183 SPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLL 242
D +E C+KA++LF + GL DA V+ +QDQAQ +LG+Y+ + S RFGRLLL
Sbjct: 239 QVDPTEYACLKAIVLFKSDARGLRDAGQVQAVQDQAQIMLGEYIASKNSEDKVRFGRLLL 298
Query: 243 MLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
+LP+LR VR +E LFF+ TIG+IPI+RLL DM+
Sbjct: 299 LLPALRGVRARGLEELFFRPTIGNIPIERLLCDMF 333
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQA 301
L++ +R +R T F+E D P + + KS + GL DA V+ +QDQA
Sbjct: 220 LLMADIRGLRDVTSR---FQEAQVD-PTEYACLKAIVLFKS-DARGLRDAGQVQAVQDQA 274
Query: 302 QCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 360
Q +LG+Y+ + S RFGRLLL+LP+LR VR +E LFF+ TIG+IPI+RLL DM+
Sbjct: 275 QIMLGEYIASKNSEDKVRFGRLLLLLPALRGVRARGLEELFFRPTIGNIPIERLLCDMF 333
>gi|391338722|ref|XP_003743704.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Metaseiulus occidentalis]
Length = 394
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 131/255 (51%), Gaps = 16/255 (6%)
Query: 34 LPPNGISSVKIPPTVLYPPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQE 93
LP NG S + ++L L PS M + P +M E E
Sbjct: 149 LPLNGASYISSFVSLLLRADSLS----PSRFVQCMAGGQNNP---------IMGIEGMCE 195
Query: 94 TTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK 153
+RLL+ A+ W R + F L DQ+ LL+++W ELF+L+ +Q S+P ++ L+
Sbjct: 196 LASRLLYSAIDWARNIPFFADLQLTDQVALLRQAWSELFVLNASQCSMPLHVATLLAASG 255
Query: 154 ARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
D V + I++ QE + + + L DG E C+KA++LFT + GL D V
Sbjct: 256 LHAAPMAADRVVAFMDHIRIFQEQVEKLKALHIDGPEYSCLKAIVLFTTDACGLSDVTQV 315
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
E LQ++ Q L +Y R +Y +QP+RFG+LLL LPSLR V TIE LFF +G I+
Sbjct: 316 ESLQEKTQSSLEEYCRAQYPQQPSRFGKLLLRLPSLRTVSSQTIEHLFFVRLVGKTSIET 375
Query: 272 LLGDMYTMEKSYETP 286
L+ DM + S+ P
Sbjct: 376 LIRDML-LGNSFNWP 389
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGDYVRGRY 313
F+E + + + G Y+ K+ + GL D VE LQ++ Q L +Y R +Y
Sbjct: 275 IFQEQVEKLKALHIDGPEYSCLKAIVLFTTDACGLSDVTQVESLQEKTQSSLEEYCRAQY 334
Query: 314 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 359
+QP+RFG+LLL LPSLR V TIE LFF +G I+ L+ DM
Sbjct: 335 PQQPSRFGKLLLRLPSLRTVSSQTIEHLFFVRLVGKTSIETLIRDM 380
>gi|405978561|gb|EKC42941.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 388
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 148/313 (47%), Gaps = 54/313 (17%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR + + L P HSP Y P+
Sbjct: 89 VQHERGPRTSTLRRQVAMYLRESSDYTTLLSGAPLHSP------------------YFPT 130
Query: 54 GLKSPPPPSHHHPSMF---------------LATHQPPPHPGLLQILM----SAEKCQET 94
S PP M + H P +P + + +A+ ET
Sbjct: 131 SFYSMNPPGMCEAVMLSTSSASSASSTPSSSVIVHPTPRYPSEMSNFIFPTNTADSVCET 190
Query: 95 TARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKA 154
AR+LFM ++W + + F L RDQL+L++ESW++LF+L LAQ+ +P +LI
Sbjct: 191 AARILFMTIKWTKSIPAFVGLPNRDQLVLIEESWRDLFILSLAQFRLPIQPHVLITASGV 250
Query: 155 RERLPPDDVRVNN---EIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPG 204
R++ EI+ + +++ +F+ ++ D +E C+KA+++F E
Sbjct: 251 TSDSKMTSERMSACMLEIRALHDVIDKFKLINVDPTEYTCLKAIVIFKTALRNPVHEMKT 310
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L D+ V +LQDQAQ L Y+ Y QP RFG+LLL+LP L+ V IE +FFK TI
Sbjct: 311 LRDSHAVALLQDQAQVTLSKYIESTYPSQPFRFGKLLLLLPLLQTVSSKVIEDIFFKRTI 370
Query: 265 GDIPIQRLLGDMY 277
G +PI +L+ DM+
Sbjct: 371 GHVPIDKLIVDMF 383
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 50/78 (64%)
Query: 283 YETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 342
+E L D+ V +LQDQAQ L Y+ Y QP RFG+LLL+LP L+ V IE +F
Sbjct: 306 HEMKTLRDSHAVALLQDQAQVTLSKYIESTYPSQPFRFGKLLLLLPLLQTVSSKVIEDIF 365
Query: 343 FKETIGDIPIQRLLGDMY 360
FK TIG +PI +L+ DM+
Sbjct: 366 FKRTIGHVPIDKLIVDMF 383
>gi|405977938|gb|EKC42362.1| Nuclear receptor subfamily 2 group F member 1-A [Crassostrea gigas]
Length = 435
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 117/219 (53%), Gaps = 19/219 (8%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ SW ELF+L+ AQ S+P
Sbjct: 210 IMGIENICELAARLLFSAVEWARNIPFFPELQITDQVALLRVSWSELFVLNAAQCSMPLH 269
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPE- 201
++ L+ D V + I++ QE + + + L D +E C+KA++LF+ +
Sbjct: 270 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFSSDR 329
Query: 202 ----------------TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLP 245
GL DA +E +Q+++QC L +YVR +Y QPTRFG+LLL LP
Sbjct: 330 KPEPVPSQRPAVNGYNACGLSDATHIENIQEKSQCALEEYVRSQYPNQPTRFGKLLLRLP 389
Query: 246 SLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYE 284
SLR V IE+LFF +G PI+ L+ DM S+
Sbjct: 390 SLRTVSAQVIEQLFFVRLVGKTPIETLIRDMLLSGGSFN 428
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 54/87 (62%)
Query: 281 KSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 340
Y GL DA +E +Q+++QC L +YVR +Y QPTRFG+LLL LPSLR V IE+
Sbjct: 342 NGYNACGLSDATHIENIQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSAQVIEQ 401
Query: 341 LFFKETIGDIPIQRLLGDMYTMEKSYG 367
LFF +G PI+ L+ DM S+
Sbjct: 402 LFFVRLVGKTPIETLIRDMLLSGGSFN 428
>gi|327283177|ref|XP_003226318.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Anolis carolinensis]
Length = 359
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 114/204 (55%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 151 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 210
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 211 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 270
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S I F
Sbjct: 271 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIAVSXFVR 330
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 331 LVGKTPIETLIRDMLLSGSSFNWP 354
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 49/81 (60%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S I F
Sbjct: 272 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIAVSXFVRL 331
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 332 VGKTPIETLIRDMLLSGSSFN 352
>gi|195061143|ref|XP_001995934.1| GH14219 [Drosophila grimshawi]
gi|193891726|gb|EDV90592.1| GH14219 [Drosophila grimshawi]
Length = 445
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/343 (31%), Positives = 157/343 (45%), Gaps = 66/343 (19%)
Query: 1 VQHERGPRKPKI--HNAHHQDSKLEPHNPHHSPDLL----PPNGISSVKIP--------- 45
VQHERGPR + H A ++D+ L P P+LL NG + +P
Sbjct: 106 VQHERGPRNSTLRRHMAMYKDAMLGAELPQIPPELLMGTAALNGFPGLPMPMPGHQRGPH 165
Query: 46 ----PTVLYPPSG-----LKSPPPPSHHHPSMFL---------ATHQPPPHPGLLQILMS 87
P PS L P P H H FL AT PP P L M+
Sbjct: 166 HPQLPGFPGAPSAAAVLDLSVPRVPHHGHHGFFLPSAAYMNALATRALPPTPPL----MA 221
Query: 88 AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSL 147
AE +ET A LF V W++ + F L DQLLLL+ESWKE F+L ++Q+ +P + +
Sbjct: 222 AEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMSQYLMPMNFAQ 281
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF--------- 198
L+ +A V+ E+ Q++L + L+ D +E C++A+ LF
Sbjct: 282 LLFVYEAENANREIVAIVSREVHAFQDVLNQLCHLNIDTTEYECLRAISLFRKSPPAASS 341
Query: 199 --------------------TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFG 238
+ E+ GL+++ V + + A+ L +Y+ + QP RF
Sbjct: 342 TEDLANSSILTGSGSPNSSASAESRGLLESSKVAGMHNDARNALHNYISRTHPNQPLRFQ 401
Query: 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
LL ++ + V TIE LFF++TIGDI I RL+ DMY+ K
Sbjct: 402 TLLGVVSLMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQRK 444
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y+ + QP RF LL ++ + V TIE L
Sbjct: 362 SAESRGLLESSKVAGMHNDARNALHNYISRTHPNQPLRFQTLLGVVSLMHKVSSFTIEEL 421
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 422 FFRKTIGDITIVRLISDMYSQRK 444
>gi|395825625|ref|XP_003786025.1| PREDICTED: COUP transcription factor 1 [Otolemur garnettii]
Length = 267
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 107/178 (60%), Gaps = 2/178 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 63 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 122
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 123 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 182
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 183 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 240
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 181 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 240
>gi|324510528|gb|ADY44403.1| Photoreceptor-specific nuclear receptor [Ascaris suum]
Length = 471
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 117/192 (60%), Gaps = 12/192 (6%)
Query: 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDL 145
+++E ET ARLLFMA++W + L F LS RDQ++LL+E W +LFLL + QWS+P +
Sbjct: 290 INSESVHETAARLLFMAIKWAKNLPSFTLLSFRDQVILLEEGWCDLFLLSVFQWSLPME- 348
Query: 146 SLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
C LP N ++ +Q++ R R + D E C+KA++LF PET GL
Sbjct: 349 ----KCPLLTSTLPLS----TNGLRYLQDLFLRIRNHNIDQGEFACLKALVLFRPETRGL 400
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
D VE LQDQAQ +L R + PTRFGRLLL+LP LR V IE++FF+ T G
Sbjct: 401 KDFAHVEELQDQAQQML---ARHSMASGPTRFGRLLLLLPLLRTVGADKIEKMFFEATFG 457
Query: 266 DIPIQRLLGDMY 277
++ I++++ MY
Sbjct: 458 NMSIEKMICKMY 469
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D VE LQDQAQ +L R + PTRFGRLLL+LP LR V IE++FF
Sbjct: 396 ETRGLKDFAHVEELQDQAQQML---ARHSMASGPTRFGRLLLLLPLLRTVGADKIEKMFF 452
Query: 344 KETIGDIPIQRLLGDMY 360
+ T G++ I++++ MY
Sbjct: 453 EATFGNMSIEKMICKMY 469
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 107/178 (60%), Gaps = 2/178 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 213 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 272
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 273 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 332
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 333 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 390
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 334 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFF 390
>gi|47209636|emb|CAF93476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 467
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 107/158 (67%)
Query: 120 QLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARF 179
Q++LL+E+W ELFLL QWS+P D L++ + + +++L+QE+ +RF
Sbjct: 308 QVILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPGIQGKGSYPSLDLRLLQEVFSRF 367
Query: 180 RQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGR 239
+ L+ D +E C+KA++LF PET GL D + VE LQDQ+Q +LG ++R YS QP RFG+
Sbjct: 368 KALAVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQSQVMLGQHIRSHYSSQPARFGK 427
Query: 240 LLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
LLL+LPSLR V IE LFF TIG+ P+++LL DM+
Sbjct: 428 LLLLLPSLRFVASERIELLFFHRTIGNTPMEKLLCDMF 465
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +LG ++R YS QP RFG+LLL+LPSLR V IE LFF
Sbjct: 389 ETRGLKDPEQVENLQDQSQVMLGQHIRSHYSSQPARFGKLLLLLPSLRFVASERIELLFF 448
Query: 344 KETIGDIPIQRLLGDMY 360
TIG+ P+++LL DM+
Sbjct: 449 HRTIGNTPMEKLLCDMF 465
>gi|284424952|dbj|BAI67122.1| nuclear receptor [Taeniopygia guttata]
Length = 181
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 106/179 (59%), Gaps = 2/179 (1%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P ++ L
Sbjct: 2 ENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPL 61
Query: 149 INCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
+ D V + I++ QE + + + L D +E C+KA++LFT + GL
Sbjct: 62 LAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLS 121
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF +G
Sbjct: 122 DVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVG 180
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 45/65 (69%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 116 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 175
Query: 344 KETIG 348
+G
Sbjct: 176 VRLVG 180
>gi|16797884|gb|AAL29200.1|AF323687_1 nuclear receptor AmNR7 [Acropora millepora]
Length = 368
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 117/194 (60%), Gaps = 2/194 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L+ DQ+ LL+ W ELF+L+ AQ +P
Sbjct: 160 IMGIENICELAARLLFSAVEWARNIPFFPDLAVTDQVALLRLVWSELFVLNAAQCPMPLQ 219
Query: 145 LS-LLINCEKARERLPPDD-VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ LL + + PD V + +++ QE + ++R L D +E C+KA++LFT +
Sbjct: 220 VAPLLASAGIHSNHMSPDRMVTFMDNVRIFQEQIEKYRNLHVDAAEFACLKAIVLFTSDA 279
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D Q +E LQ++ QC L +Y R +Y QPTRFG+LLL LPSLR++ S +E+LFF
Sbjct: 280 SGLTDPQYIESLQEKTQCALEEYTRNQYPNQPTRFGKLLLRLPSLRSINSSIVEQLFFVR 339
Query: 263 TIGDIPIQRLLGDM 276
+G PI LL DM
Sbjct: 340 LVGKTPIDTLLRDM 353
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 51/76 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D Q +E LQ++ QC L +Y R +Y QPTRFG+LLL LPSLR++ S +E+LFF
Sbjct: 278 DASGLTDPQYIESLQEKTQCALEEYTRNQYPNQPTRFGKLLLRLPSLRSINSSIVEQLFF 337
Query: 344 KETIGDIPIQRLLGDM 359
+G PI LL DM
Sbjct: 338 VRLVGKTPIDTLLRDM 353
>gi|321465568|gb|EFX76568.1| hypothetical protein DAPPUDRAFT_106791 [Daphnia pulex]
Length = 310
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 120/200 (60%), Gaps = 8/200 (4%)
Query: 78 HPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLA 137
H +++ +A+ ET ARLLFMAV+W + L F L RDQ++LL+ESW ELFL+
Sbjct: 117 HERIIREAAAADNVYETAARLLFMAVKWAKSLPSFAGLPFRDQVILLEESWSELFLICAI 176
Query: 138 QWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVIL 197
Q+ +P D + L + + P + + RFR ++ D +E C+KA+IL
Sbjct: 177 QFCLPMDNNPLFSLAHFNQ---PHSATLG-----CGNGVTRFRVVAVDPAEFACLKAIIL 228
Query: 198 FTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
F ET GL D VE LQDQAQ +L ++R + ++P RFGRLLL LP LR V +E+
Sbjct: 229 FKSETRGLKDPIQVENLQDQAQVMLNQHIRNQQPQRPARFGRLLLTLPLLRHVTAHRLEQ 288
Query: 258 LFFKETIGDIPIQRLLGDMY 277
L+F+ TIG P++++L DMY
Sbjct: 289 LYFRHTIGSTPMEKVLCDMY 308
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D VE LQDQAQ +L ++R + ++P RFGRLLL LP LR V +E+L+F
Sbjct: 232 ETRGLKDPIQVENLQDQAQVMLNQHIRNQQPQRPARFGRLLLTLPLLRHVTAHRLEQLYF 291
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG P++++L DMY
Sbjct: 292 RHTIGSTPMEKVLCDMY 308
>gi|74187239|dbj|BAE22615.1| unnamed protein product [Mus musculus]
Length = 173
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 109/170 (64%), Gaps = 17/170 (10%)
Query: 121 LLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV------RVNNEIKLIQE 174
L+LL+++W+ELF+L +AQW+IP D + L+ A + D+ ++ +EI+ +QE
Sbjct: 3 LMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNTDNTDSQKLNKIISEIQALQE 58
Query: 175 ILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVEMLQDQAQCILGDYVR 227
++ARFRQL D +E C+K ++ F E +A + LQD+AQ L Y+
Sbjct: 59 VVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIH 118
Query: 228 GRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RLL DMY
Sbjct: 119 TRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMY 168
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 98 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 157
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 158 VPITRLLSDMY 168
>gi|156374224|ref|XP_001629708.1| predicted protein [Nematostella vectensis]
gi|156216714|gb|EDO37645.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 116/194 (59%), Gaps = 2/194 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L+ DQ+ LL+ W ELF+L+ AQ +P
Sbjct: 158 IMGIENICELAARLLFSAVEWARNIPFFPDLAVTDQVALLRLVWSELFVLNAAQCPMPLQ 217
Query: 145 LS-LLINCEKARERLPPDD-VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ LL + PD V + I++ QE + + R L D +E C+KA++LFT +
Sbjct: 218 VAPLLATAGIHSNHMSPDRMVSFMDNIRIFQEQVEKLRNLHVDAAEFACLKAIVLFTSDA 277
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D Q +E LQ++ QC L +Y R +Y QPTRFG+LLL LPSLR++ S +E+LFF
Sbjct: 278 SGLTDPQYIESLQEKTQCALEEYTRNQYPNQPTRFGKLLLRLPSLRSISSSVVEQLFFVR 337
Query: 263 TIGDIPIQRLLGDM 276
+G PI+ LL DM
Sbjct: 338 LVGKTPIETLLRDM 351
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D Q +E LQ++ QC L +Y R +Y QPTRFG+LLL LPSLR++ S +E+LFF
Sbjct: 276 DASGLTDPQYIESLQEKTQCALEEYTRNQYPNQPTRFGKLLLRLPSLRSISSSVVEQLFF 335
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ LL DM
Sbjct: 336 VRLVGKTPIETLLRDM 351
>gi|296803356|gb|ADH51741.1| putative tailless protein [Episyrphus balteatus]
Length = 418
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 158/306 (51%), Gaps = 31/306 (10%)
Query: 1 VQHERGPRKPKI--HNAHHQDSKLEPHNPHHSPDLLPPN---GISSVKIPPTVLYPPSGL 55
VQHERGPR + H ++++ + H+S L+ + G++ +IP ++ +PP+GL
Sbjct: 106 VQHERGPRNSTLRRHLEIYKETMVADMPLHYSQGLIINSALGGLAEFQIPTSMCFPPNGL 165
Query: 56 KSPPPPSHHHPSMFLATHQPPPHPGLLQ----ILMSAEKCQETTARLLFMAVRWVRCLAP 111
P HHP F ++ H Q L A+ +ET A +LF W++ A
Sbjct: 166 DLTLPRGVHHPPSFNLSYMNSIHNKPFQPTSSSLSQADHIKETAAEILFKNFNWIQKKAT 225
Query: 112 FQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVR-VNNEIK 170
F+ L DQL LL++SWK+LF++ +AQ SI ++ +++ ++ E D VR V++E++
Sbjct: 226 FKQLPMSDQLELLEDSWKDLFIIGMAQCSIAMNVEQILHTYES-ENPNKDIVRIVSSEMQ 284
Query: 171 LIQEILARFRQLSPDGSECGCMKAVILFTP--------------------ETPGLVDAQP 210
+ ++++ +F L D E C++ ++LF ++ L++
Sbjct: 285 VFRDVIHQFHLLKLDNDEYECLREIMLFKKPANVINHQDHQSSISSSSSSDSHNLIETVR 344
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
+ L ++A C Y++ + T+ G ++ + ++ V TIE +FF++TIG IPI
Sbjct: 345 ILQLYEEANCAFPKYIKSAHGTHLTKLGSIMRTVTEMKNVSTFTIEEVFFRQTIGHIPII 404
Query: 271 RLLGDM 276
RL+ DM
Sbjct: 405 RLISDM 410
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
L++ + L ++A C Y++ + T+ G ++ + ++ V TIE +FF++T
Sbjct: 338 NLIETVRILQLYEEANCAFPKYIKSAHGTHLTKLGSIMRTVTEMKNVSTFTIEEVFFRQT 397
Query: 347 IGDIPIQRLLGDM 359
IG IPI RL+ DM
Sbjct: 398 IGHIPIIRLISDM 410
>gi|194905186|ref|XP_001981146.1| GG11781 [Drosophila erecta]
gi|190655784|gb|EDV53016.1| GG11781 [Drosophila erecta]
Length = 438
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 156/337 (46%), Gaps = 61/337 (18%)
Query: 1 VQHERGPRKPKI--HNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSP 58
VQHERGPR + H A ++D+ + P + N +++ P V P GL
Sbjct: 106 VQHERGPRNSTLRRHMAMYKDAMMGAGEMPQIPAEILMN-TAALTGFPGVPMPMPGL--- 161
Query: 59 PPPSHHHPSMFLATHQPPP---------------------HPGLLQI------------- 84
P + HHP +A QPPP H G
Sbjct: 162 PQRAGHHPG-HMAGFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRAL 220
Query: 85 -----LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW 139
LM+AE +ET A LF V W++ + F L DQLLLL+ESWKE F+L +AQ+
Sbjct: 221 PPTPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQY 280
Query: 140 SIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF- 198
+P + + L+ ++ V E+ QE+L + L+ D +E C++A+ LF
Sbjct: 281 LMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFR 340
Query: 199 --------------TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLML 244
+ E+ GL+++ V + + A+ L +Y++ + QP RF LL ++
Sbjct: 341 NSILTGSGSPNSSASAESKGLLESGKVAAMHNDARSALHNYIQRTHPAQPMRFQTLLGVV 400
Query: 245 PSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
+ V TIE LFF++TIGDI I RL+ DMY+ K
Sbjct: 401 QMMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQRK 437
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y++ + QP RF LL ++ + V TIE L
Sbjct: 355 SAESKGLLESGKVAAMHNDARSALHNYIQRTHPAQPMRFQTLLGVVQMMHKVSSFTIEEL 414
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 415 FFRKTIGDITIVRLISDMYSQRK 437
>gi|74145119|dbj|BAE27426.1| unnamed protein product [Mus musculus]
Length = 390
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 116/208 (55%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
++ + E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P
Sbjct: 183 VLGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLH 242
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
+ L+ A ER V ++++ QE + + +L D +E GC+KA+ LF
Sbjct: 243 TAPLLAAAGLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALF 298
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
TP+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP++RAV S I +L
Sbjct: 299 TPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPAMRAVPASLISQL 358
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ L+ DM ++ P
Sbjct: 359 FFMRLVGKTPIETLIRDMLLSGSTFNWP 386
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP++RAV S I +LFF
Sbjct: 304 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPAMRAVPASLISQLFFMRL 363
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 364 VGKTPIETLIRDM 376
>gi|345794757|ref|XP_544754.3| PREDICTED: photoreceptor-specific nuclear receptor [Canis lupus
familiaris]
Length = 304
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 111/166 (66%), Gaps = 10/166 (6%)
Query: 118 RDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK------ARERLPPDDVRVNNEIKL 171
RDQ++LL+E+W ELFLL QWS+P D L+ + ++ RL + E ++
Sbjct: 141 RDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAAPEGPAAGSSQGRL----ALASAESRI 196
Query: 172 IQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYS 231
+QE ++RFR L+ D +E CMKA++LFTPET GL D + VE LQDQ+Q +L + + +
Sbjct: 197 LQETISRFRALAVDPTEFACMKALVLFTPETRGLKDPEHVEALQDQSQVMLSQHSKAHHP 256
Query: 232 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
QP RFG+LLL+LPSLR + +E LFF++TIG+ P+++LL DM+
Sbjct: 257 SQPVRFGKLLLLLPSLRFITSERVELLFFRKTIGNTPMEKLLCDMF 302
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF
Sbjct: 226 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFF 285
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 286 RKTIGNTPMEKLLCDMF 302
>gi|403256261|ref|XP_003920807.1| PREDICTED: COUP transcription factor 1 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 279
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 116/210 (55%), Gaps = 8/210 (3%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 63 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 122
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-- 200
++ L+ D V + I++ QE + + + L D +E C+ ++ L P
Sbjct: 123 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLSSLSLSLPPM 182
Query: 201 ----ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIE 256
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE
Sbjct: 183 AARADACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIE 242
Query: 257 RLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
+LFF +G PI+ L+ DM S+ P
Sbjct: 243 QLFFVRLVGKTPIETLIRDMLLSGSSFNWP 272
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 56/89 (62%)
Query: 279 MEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 338
M + GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S I
Sbjct: 182 MAARADACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 241
Query: 339 ERLFFKETIGDIPIQRLLGDMYTMEKSYG 367
E+LFF +G PI+ L+ DM S+
Sbjct: 242 EQLFFVRLVGKTPIETLIRDMLLSGSSFN 270
>gi|449281976|gb|EMC88912.1| COUP transcription factor 2 [Columba livia]
Length = 281
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 111/204 (54%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 73 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 132
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L SE C + F+
Sbjct: 133 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVAVSEKKCPDPIREFSSYA 192
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 193 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 252
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 253 LVGKTPIETLIRDMLLSGSSFNWP 276
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 55/88 (62%)
Query: 280 EKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIE 339
E S GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE
Sbjct: 187 EFSSYACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIE 246
Query: 340 RLFFKETIGDIPIQRLLGDMYTMEKSYG 367
+LFF +G PI+ L+ DM S+
Sbjct: 247 QLFFVRLVGKTPIETLIRDMLLSGSSFN 274
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 105/177 (59%), Gaps = 2/177 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 187 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 246
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 247 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 306
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LF
Sbjct: 307 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLF 363
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 342
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LF
Sbjct: 305 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLF 363
>gi|390357069|ref|XP_003728922.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 585
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L S + E ARLLFM V+W R + F TL DQ +LL+ESW ELF+L QWS+ +
Sbjct: 416 LTSHDLLYEGAARLLFMTVKWARGMPAFLTLPFSDQAILLEESWGELFVLGACQWSLSAE 475
Query: 145 LSLLINCEKARE-RLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
L++ E + D + ++++++Q+I+ R R+L D E C+KA+ LF P++
Sbjct: 476 CGQLVSAETLNSLKKDQSDTSIQHDVRILQDIVCRVRELQADPMEFACLKALTLFRPDSR 535
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVR 251
GL + VE LQD+ Q L +Y Y Q RFG+LLL+LPS+R+VR
Sbjct: 536 GLREVMTVERLQDETQLTLAEYNHAHYLTQRARFGKLLLLLPSVRSVR 583
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVR 334
++ GL + VE LQD+ Q L +Y Y Q RFG+LLL+LPS+R+VR
Sbjct: 533 DSRGLREVMTVERLQDETQLTLAEYNHAHYLTQRARFGKLLLLLPSVRSVR 583
>gi|355778151|gb|EHH63187.1| hypothetical protein EGM_16101, partial [Macaca fascicularis]
Length = 302
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 109/169 (64%), Gaps = 10/169 (5%)
Query: 115 LSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN------CEKARERLPPDDVRVNNE 168
L DQ++LL+E+W ELFLL QWS+P D L+ A+ RL + E
Sbjct: 136 LEPEDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRL----TLASME 191
Query: 169 IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRG 228
++++E ++RFR L+ D +E CMKA++LF PET GL D + VE LQDQ+Q +L + +
Sbjct: 192 TRVLRETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKA 251
Query: 229 RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
+ QP RFG+LLL+LPSLR + IE LFF++TIG+ P+++LL DM+
Sbjct: 252 HHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 300
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 224 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 283
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 284 RKTIGNTPMEKLLCDMF 300
>gi|195390875|ref|XP_002054093.1| tailless [Drosophila virilis]
gi|194152179|gb|EDW67613.1| tailless [Drosophila virilis]
Length = 450
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 159/360 (44%), Gaps = 95/360 (26%)
Query: 1 VQHERGPRKPKI--HNAHHQDSKLEPHNPHHSPDLLPPNGISSV-KIPPTVLYPPS---- 53
VQHERGPR + H A ++D+ + G + + +IPP +L +
Sbjct: 106 VQHERGPRNSTLRRHMAMYKDAMM---------------GAAEMPQIPPEILMNTAALTG 150
Query: 54 --GLKSPPPP---SHHHPSMFLATHQPPPHPGLLQI------------------------ 84
GL P P SHHH ++ A QPPP +L +
Sbjct: 151 FPGLPMPMPGVQRSHHHAAL-SAAFQPPPSAAVLDLSVPRVPHHPVHQGHHGFFSPTAAY 209
Query: 85 --------------LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKE 130
LM+AE +ET A LF V W++ + F L DQLLLL+ESWKE
Sbjct: 210 MNALATRALPPTPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKE 269
Query: 131 LFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECG 190
F+L +AQ+ +P + + L+ ++ V E+ Q++L + L+ D +E
Sbjct: 270 FFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCHLNIDSTEYE 329
Query: 191 CMKAVILF-----------------------------TPETPGLVDAQPVEMLQDQAQCI 221
C++A+ LF + E+ GL+++ V + + A+
Sbjct: 330 CLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVAAMHNDARNA 389
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
L +Y+ + QP RF LL ++ + V TIE LFF++TIGDI I RL+ DMY+ K
Sbjct: 390 LHNYISRTHPNQPLRFQTLLGVVTLMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQRK 449
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y+ + QP RF LL ++ + V TIE L
Sbjct: 367 SAESRGLLESSKVAAMHNDARNALHNYISRTHPNQPLRFQTLLGVVTLMHKVSSFTIEEL 426
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 427 FFRKTIGDITIVRLISDMYSQRK 449
>gi|198459166|ref|XP_002138651.1| GA25604, partial [Drosophila pseudoobscura pseudoobscura]
gi|198136600|gb|EDY69209.1| GA25604, partial [Drosophila pseudoobscura pseudoobscura]
Length = 275
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 118/220 (53%), Gaps = 36/220 (16%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD---- 144
E ET+ARLLFMAV+W + L F LS RDQ++LL+ESW ELFLL+ QW IP D
Sbjct: 59 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 118
Query: 145 --LSLLINCEKARERLPPDDVRVNNEIKL-------------------------IQEILA 177
S+ +C D E+ L + EI
Sbjct: 119 ALFSVAEHCNNLENNANGDTCTTKEEVSLSTIGLRVLVVRNDIVVGQLAADVRTLHEIFC 178
Query: 178 RFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRF 237
+++ + D +E C+KA++LF PET GL D +E LQDQA + + +++ Q RF
Sbjct: 179 KYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQIENLQDQAH-----HTKTQFTAQIARF 233
Query: 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
GRLLLMLP LR + IE ++F+ TIG+ P++++L DMY
Sbjct: 234 GRLLLMLPLLRMISSHKIESIYFQRTIGNTPMEKVLCDMY 273
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E LQDQA + + +++ Q RFGRLLLMLP LR + IE ++F
Sbjct: 202 ETRGLKDPAQIENLQDQAH-----HTKTQFTAQIARFGRLLLMLPLLRMISSHKIESIYF 256
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P++++L DMY
Sbjct: 257 QRTIGNTPMEKVLCDMY 273
>gi|242020457|ref|XP_002430670.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515850|gb|EEB17932.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 344
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 106/182 (58%), Gaps = 13/182 (7%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E E+ A+LLF+ V+W R + F L+ DQ +LL+ +W ELF+L AQW++P D L
Sbjct: 168 ENVYESAAKLLFLTVKWARSIPSFLQLTFHDQSILLENTWNELFILSAAQWTLPVDEEYL 227
Query: 149 INC-----EKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+ KA+E+ E+K ++I+ +F L+ D +E C+KA+ LF ET
Sbjct: 228 VRVTSLPNNKAKEKFE-------REVKNFKKIITKFNNLNVDYTEYACLKALTLFKAETS 280
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 263
L D VEMLQDQ +L DY + S + RFG+LL++LPS+ + + IE L F++T
Sbjct: 281 ELKDRLQVEMLQDQTHIMLHDYCTSQDSHKA-RFGKLLMLLPSVNGLSKDFIEELLFRKT 339
Query: 264 IG 265
IG
Sbjct: 340 IG 341
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET L D VEMLQDQ +L DY + S + RFG+LL++LPS+ + + IE L F
Sbjct: 278 ETSELKDRLQVEMLQDQTHIMLHDYCTSQDSHKA-RFGKLLMLLPSVNGLSKDFIEELLF 336
Query: 344 KETIG 348
++TIG
Sbjct: 337 RKTIG 341
>gi|321454980|gb|EFX66127.1| hypothetical protein DAPPUDRAFT_116667 [Daphnia pulex]
Length = 340
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/277 (36%), Positives = 145/277 (52%), Gaps = 22/277 (7%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPP 60
VQHER PR + +L+P ++ LLP S K P P + + P
Sbjct: 81 VQHERAPRGALKRSYQ---PELDPTVQTNATPLLPLR--VSYKSPTVTSTSPVVMPTDP- 134
Query: 61 PSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQ 120
+ H L I ++ E ARLLF+ VRW + + F L RDQ
Sbjct: 135 ----------VSQLNASHHCLSGIRDTSNDVNEAAARLLFLTVRWAKSIPSFSHLFYRDQ 184
Query: 121 LLLLQESWKELFLLHLAQWSIPWD-LSLLINC-EKARERLPPDDVRVNNEIKLIQEILAR 178
LLL+E+W ELF+L +AQW + D ++ + NC E ER + ++ + +++AR
Sbjct: 185 SLLLEEAWCELFVLTVAQWGLSLDEVNTMRNCPELTSERHEL----LLEGLRHLHQVVAR 240
Query: 179 FRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFG 238
L D +E C+KA++LF PET GL D +E+LQDQ Q +L D VR RFG
Sbjct: 241 IHLLRLDHTEFACLKALVLFKPETLGLRDGLAIEILQDQTQMMLHDMVRSHRPSLAGRFG 300
Query: 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
+LLL+LP+L+AV+ + + LFF++ IGD PI RLL D
Sbjct: 301 KLLLLLPALKAVQSANVVDLFFRKLIGDTPISRLLAD 337
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 50/75 (66%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D +E+LQDQ Q +L D VR RFG+LLL+LP+L+AV+ + + LFF
Sbjct: 263 ETLGLRDGLAIEILQDQTQMMLHDMVRSHRPSLAGRFGKLLLLLPALKAVQSANVVDLFF 322
Query: 344 KETIGDIPIQRLLGD 358
++ IGD PI RLL D
Sbjct: 323 RKLIGDTPISRLLAD 337
>gi|345325277|ref|XP_003430902.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Ornithorhynchus anatinus]
Length = 337
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 141/297 (47%), Gaps = 73/297 (24%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSV--------KIP 45
VQHERGPR I H ++ P P S L P ++V ++
Sbjct: 89 VQHERGPRTSTIRKQVALYFRGHKEEDGTAP--PFPSGALPAPAFFTAVAQLEPHNLELA 146
Query: 46 PTVLYPP-----SGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLF 100
V PP +GL P P +P H+ P L + + C E+ ARLLF
Sbjct: 147 AAVSGPPERQALAGLAQPTP---KYP------HEVNGTPMYLYEVATESVC-ESAARLLF 196
Query: 101 MAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPP 160
M+++W + + F TLS DQL+LL+++W+ELF+L +AQW+IP D + L+
Sbjct: 197 MSIKWAKSVPAFSTLSLPDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----------- 245
Query: 161 DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
+ + + R +A + LQD+AQ
Sbjct: 246 -------AVSVPTHSGSELRSFG-----------------------NAAAIAALQDEAQL 275
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RLL DMY
Sbjct: 276 TLNSYIHTRYPTQPCRFGKLLLLLPALRSIGPSTIEEVFFKKTIGNVPITRLLSDMY 332
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 262 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSIGPSTIEEVFFKKTIGN 321
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 322 VPITRLLSDMY 332
>gi|357627327|gb|EHJ77063.1| putative Orphan nuclear receptor NR2E1 [Danaus plexippus]
Length = 390
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 111/204 (54%), Gaps = 23/204 (11%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E E ARLLFM V+W + + F +LS +D+L+LL+ESW++LF++ AQ+ P DL +L
Sbjct: 188 EAICEAAARLLFMNVKWAKNVPAFSSLSLQDRLILLEESWRDLFVIGSAQFLYPLDLKVL 247
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------- 200
+N + + + I ++ L ++ PD +E C++A++LF
Sbjct: 248 VNTKHTKVD--------SKHIADFEKALIELTKMHPDNNEYACLRAIVLFKTNFNAVHTN 299
Query: 201 -------ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQS 253
E L D V LQD +Q +L +Y+ Y TR +LL L ++R V +
Sbjct: 300 SLPQSHIEIKKLKDLPAVASLQDHSQAVLNEYITRLYPGDTTRSNQLLQSLSAVRNVSST 359
Query: 254 TIERLFFKETIGDIPIQRLLGDMY 277
TI LFF+ TIGDIPI+R++ DMY
Sbjct: 360 TIVELFFRATIGDIPIERIISDMY 383
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E L D V LQD +Q +L +Y+ Y TR +LL L ++R V +TI LFF
Sbjct: 307 EIKKLKDLPAVASLQDHSQAVLNEYITRLYPGDTTRSNQLLQSLSAVRNVSSTTIVELFF 366
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIGDIPI+R++ DMY
Sbjct: 367 RATIGDIPIERIISDMY 383
>gi|195505298|ref|XP_002099444.1| GE10907 [Drosophila yakuba]
gi|194185545|gb|EDW99156.1| GE10907 [Drosophila yakuba]
Length = 452
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 156/351 (44%), Gaps = 75/351 (21%)
Query: 1 VQHERGPRKPKI--HNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSP 58
VQHERGPR + H A ++D+ + P + N +++ P V P GL
Sbjct: 106 VQHERGPRNSTLRRHMAMYKDAMMGAGEMPQIPAEILMN-TAALTGFPGVPMPMPGL--- 161
Query: 59 PPPSHHHPSMFLATHQPPP---------------------HPGLLQI------------- 84
P + HHP +A QPPP H G
Sbjct: 162 PQRAGHHPG-HMAAFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRAL 220
Query: 85 -----LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW 139
LM+AE +ET A LF V W++ + F L DQLLLL+ESWKE F+L +AQ+
Sbjct: 221 PPTPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQY 280
Query: 140 SIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF- 198
+P + + L+ ++ V E+ QE+L + L+ D +E C++A+ LF
Sbjct: 281 LMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFR 340
Query: 199 ----------------------------TPETPGLVDAQPVEMLQDQAQCILGDYVRGRY 230
+ E+ GL+++ V + + A+ L +Y++ +
Sbjct: 341 KSPPSASSTEDLANSSILTGSGSPNSSASAESKGLLESGKVAAMHNDARSALHNYIQRTH 400
Query: 231 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
QP RF LL ++ + V TIE LFF++TIGDI I RL+ DMY+ K
Sbjct: 401 PTQPMRFQTLLGVVQMMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQRK 451
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y++ + QP RF LL ++ + V TIE L
Sbjct: 369 SAESKGLLESGKVAAMHNDARSALHNYIQRTHPTQPMRFQTLLGVVQMMHKVSSFTIEEL 428
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 429 FFRKTIGDITIVRLISDMYSQRK 451
>gi|328787581|ref|XP_624042.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Apis
mellifera]
Length = 394
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 116/194 (59%), Gaps = 11/194 (5%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
++ E E A+LLF AVRW R + F L RDQ +LL+ESW ELF+L AQW+ P +
Sbjct: 207 ILPTENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVE 266
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
+ L+ + + ER + +E + ++E+LA+ L D SE C+KA++LF E+ G
Sbjct: 267 EAALVPNDLSSER----KETLVDEARKLRELLAKCALLRVDHSEYACLKAIVLFKGESRG 322
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + + LQ+Q + + R R GRLLL+LPS RA+ +ST++ L FK T+
Sbjct: 323 LCEPGRITALQEQTVAVFCE-------RDARRVGRLLLLLPSARALCRSTLQELLFKPTV 375
Query: 265 GDIPIQRLLGDMYT 278
GD+ ++RLLGDM +
Sbjct: 376 GDVSVERLLGDMVS 389
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%), Gaps = 7/78 (8%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E+ GL + + LQ+Q + + R R GRLLL+LPS RA+ +ST++ L F
Sbjct: 319 ESRGLCEPGRITALQEQTVAVFCE-------RDARRVGRLLLLLPSARALCRSTLQELLF 371
Query: 344 KETIGDIPIQRLLGDMYT 361
K T+GD+ ++RLLGDM +
Sbjct: 372 KPTVGDVSVERLLGDMVS 389
>gi|6094487|sp|O16845.1|TLL_DROVI RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|2440021|gb|AAB71370.1| tailless protein [Drosophila virilis]
Length = 450
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 157/360 (43%), Gaps = 95/360 (26%)
Query: 1 VQHERGPRKPKI--HNAHHQDSKLEPHNPHHSPDLLPPNGISSV-KIPPTVLYPPS---- 53
VQHERGPR + H A ++D+ + G + + +IPP +L +
Sbjct: 106 VQHERGPRNSTLRRHMAMYKDAMM---------------GAAEMPQIPPEILMNTAALTG 150
Query: 54 --GLKSPPPP---SHHHPSMFLATHQPPPHPGLLQI------------------------ 84
GL P P SHHH ++ A QPPP +L +
Sbjct: 151 FPGLPMPMPGVQRSHHHAAL-SAAFQPPPSAAVLDLSVPRVPHHPVHQGHHGFFSPTAAY 209
Query: 85 --------------LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKE 130
LM+AE +ET A LF V W++ + F L DQLLLL+ESWKE
Sbjct: 210 MNALATRALPPTPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKE 269
Query: 131 LFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECG 190
F+L +AQ+ +P + + L+ ++ V E+ Q + R L+ D +E
Sbjct: 270 FFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQAVPNRLCHLNIDSTEYE 329
Query: 191 CMKAVILF-----------------------------TPETPGLVDAQPVEMLQDQAQCI 221
C++A+ LF + E+ GL+++ V + + A+
Sbjct: 330 CLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVAAMHNDARNA 389
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
L +Y+ + QP RF LL ++ + V TIE LFF++TIGDI I RL+ DMY+ K
Sbjct: 390 LHNYISRTHPNQPLRFQTLLGVVTLMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQRK 449
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y+ + QP RF LL ++ + V TIE L
Sbjct: 367 SAESRGLLESSKVAAMHNDARNALHNYISRTHPNQPLRFQTLLGVVTLMHKVSSFTIEEL 426
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 427 FFRKTIGDITIVRLISDMYSQRK 449
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 313 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 372
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L AV+L +
Sbjct: 373 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVXXXXXXXXGAVLLEVSDA 432
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 433 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 492
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 493 LVGKTPIETLIRDMLLSGSSFNWP 516
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 434 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 493
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 494 VGKTPIETLIRDMLLSGSSF 513
>gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2 group F member 5 [Danio rerio]
gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 5;
AltName: Full=Steroid receptor homolog SVP 46
gi|296421|emb|CAA49781.1| spv 46 [Danio rerio]
gi|190339654|gb|AAI62999.1| Nr2f5 protein [Danio rerio]
gi|190340229|gb|AAI62963.1| Nuclear receptor subfamily 2, group F, member 5 [Danio rerio]
Length = 403
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 119/208 (57%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
LM E E ARLLF AV W + + F L DQ+ LL+ SW ELF+L+ AQ S+P
Sbjct: 181 LMGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLH 240
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
++ L+ + ER+ V + I++ QE + + + L D +E C+K+++LF
Sbjct: 241 VAPLLAAAGLHASPMSAERV----VAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLF 296
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
T + GL D VE +Q+++QC L +YVR +Y QP RFGRLLL LPSLR V IE+L
Sbjct: 297 TSDAMGLSDVAHVESIQEKSQCALEEYVRNQYPNQPNRFGRLLLRLPSLRIVSSPVIEQL 356
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ LL DM SY P
Sbjct: 357 FFVRLVGKTPIETLLRDMLLSGSSYNWP 384
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE +Q+++QC L +YVR +Y QP RFGRLLL LPSLR V IE+LFF
Sbjct: 302 GLSDVAHVESIQEKSQCALEEYVRNQYPNQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRL 361
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ LL DM SY
Sbjct: 362 VGKTPIETLLRDMLLSGSSY 381
>gi|17864126|ref|NP_524596.1| tailless [Drosophila melanogaster]
gi|135913|sp|P18102.1|TLL_DROME RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|158604|gb|AAA28936.1| tailless (tll) protein [Drosophila melanogaster]
gi|2440022|gb|AAB71371.1| tailless protein [Drosophila melanogaster]
gi|7301986|gb|AAF57091.1| tailless [Drosophila melanogaster]
gi|66571248|gb|AAY51589.1| IP01133p [Drosophila melanogaster]
gi|220943320|gb|ACL84203.1| tll-PA [synthetic construct]
gi|220953302|gb|ACL89194.1| tll-PA [synthetic construct]
Length = 452
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 155/351 (44%), Gaps = 75/351 (21%)
Query: 1 VQHERGPRKPKI--HNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSP 58
VQHERGPR + H A ++D+ + P + N + P V P GL
Sbjct: 106 VQHERGPRNSTLRRHMAMYKDAMMGAGEMPQIPAEILMNTAALTGFP-GVPMPMPGL--- 161
Query: 59 PPPSHHHPSMFLATHQPPP---------------------HPGLLQI------------- 84
P + HHP+ +A QPPP H G
Sbjct: 162 PQRAGHHPA-HMAAFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRAL 220
Query: 85 -----LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW 139
LM+AE +ET A LF V W++ + F L DQLLLL+ESWKE F+L +AQ+
Sbjct: 221 PPTPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQY 280
Query: 140 SIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF- 198
+P + + L+ ++ V E+ QE+L + L+ D +E C++A+ LF
Sbjct: 281 LMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFR 340
Query: 199 ----------------------------TPETPGLVDAQPVEMLQDQAQCILGDYVRGRY 230
+ E+ GL+++ V + + A+ L +Y++ +
Sbjct: 341 KSPPSASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTH 400
Query: 231 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
QP RF LL ++ + V TIE LFF++TIGDI I RL+ DMY+ K
Sbjct: 401 PSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQRK 451
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y++ + QP RF LL ++ + V TIE L
Sbjct: 369 SAESRGLLESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEEL 428
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 429 FFRKTIGDITIVRLISDMYSQRK 451
>gi|195575179|ref|XP_002105557.1| GD21550 [Drosophila simulans]
gi|194201484|gb|EDX15060.1| GD21550 [Drosophila simulans]
Length = 452
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 155/351 (44%), Gaps = 75/351 (21%)
Query: 1 VQHERGPRKPKI--HNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSP 58
VQHERGPR + H A ++D+ + P + N + P V P GL
Sbjct: 106 VQHERGPRNSTLRRHMAMYKDAMMGAGEMPQIPAEILMNTAALTGFP-GVPMPMPGL--- 161
Query: 59 PPPSHHHPSMFLATHQPPP---------------------HPGLLQI------------- 84
P + HHP+ +A QPPP H G
Sbjct: 162 PQRAGHHPA-HMAAFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRAL 220
Query: 85 -----LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW 139
LM+AE +ET A LF V W++ + F L DQLLLL+ESWKE F+L +AQ+
Sbjct: 221 PPTPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQY 280
Query: 140 SIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF- 198
+P + + L+ ++ V E+ QE+L + L+ D +E C++A+ LF
Sbjct: 281 LMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFR 340
Query: 199 ----------------------------TPETPGLVDAQPVEMLQDQAQCILGDYVRGRY 230
+ E+ GL+++ V + + A+ L +Y++ +
Sbjct: 341 KSPPSASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTH 400
Query: 231 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
QP RF LL ++ + V TIE LFF++TIGDI I RL+ DMY+ K
Sbjct: 401 PSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQRK 451
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y++ + QP RF LL ++ + V TIE L
Sbjct: 369 SAESRGLLESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEEL 428
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 429 FFRKTIGDITIVRLISDMYSQRK 451
>gi|410904505|ref|XP_003965732.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Takifugu rubripes]
Length = 404
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 119/208 (57%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
LM E E ARLLF AV W + + F L DQ+ LL+ SW ELF+L+ AQ S+P
Sbjct: 181 LMGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLH 240
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
++ L+ + ER+ V + I++ QE + + + L D +E C+K+++LF
Sbjct: 241 VAPLLAAAGLHASPMSAERV----VAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLF 296
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
T + GL D VE +Q+++QC L +YVR +Y QP RFGRLLL LPSLR V IE+L
Sbjct: 297 TSDAMGLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQL 356
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ LL DM SY P
Sbjct: 357 FFVRLVGKTPIETLLRDMLLSGSSYNWP 384
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE +Q+++QC L +YVR +Y QP RFGRLLL LPSLR V IE+LFF
Sbjct: 302 GLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRL 361
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ LL DM SY
Sbjct: 362 VGKTPIETLLRDMLLSGSSY 381
>gi|348511313|ref|XP_003443189.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oreochromis niloticus]
Length = 404
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 119/208 (57%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
LM E E ARLLF AV W + + F L DQ+ LL+ SW ELF+L+ AQ S+P
Sbjct: 181 LMGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLH 240
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
++ L+ + ER+ V + I++ QE + + + L D +E C+K+++LF
Sbjct: 241 VAPLLAAAGLHASPMSAERV----VAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLF 296
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
T + GL D VE +Q+++QC L +YVR +Y QP RFGRLLL LPSLR V IE+L
Sbjct: 297 TSDAMGLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQL 356
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ LL DM SY P
Sbjct: 357 FFVRLVGKTPIETLLRDMLLSGSSYNWP 384
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE +Q+++QC L +YVR +Y QP RFGRLLL LPSLR V IE+LFF
Sbjct: 302 GLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRL 361
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ LL DM SY
Sbjct: 362 VGKTPIETLLRDMLLSGSSY 381
>gi|47214501|emb|CAG00925.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 119/208 (57%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
LM E E ARLLF AV W + + F L DQ+ LL+ SW ELF+L+ AQ S+P
Sbjct: 179 LMGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLH 238
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
++ L+ + ER+ V + I++ QE + + + L D +E C+K+++LF
Sbjct: 239 VAPLLAAAGLHASPMSAERV----VAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLF 294
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
T + GL D VE +Q+++QC L +YVR +Y QP RFGRLLL LPSLR V IE+L
Sbjct: 295 TSDAMGLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQL 354
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ LL DM SY P
Sbjct: 355 FFVRLVGKTPIETLLRDMLLSGSSYNWP 382
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE +Q+++QC L +YVR +Y QP RFGRLLL LPSLR V IE+LFF
Sbjct: 300 GLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRL 359
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ LL DM SY
Sbjct: 360 VGKTPIETLLRDMLLSGSSY 379
>gi|326916109|ref|XP_003204353.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Meleagris gallopavo]
Length = 339
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 105/166 (63%), Gaps = 17/166 (10%)
Query: 125 QESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV------RVNNEIKLIQEILAR 178
+++W+ELF+L +AQW+IP D + L+ A + D+ ++ +EI+ +QE++AR
Sbjct: 173 EDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDSQKLNKIISEIQALQEVVAR 228
Query: 179 FRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVEMLQDQAQCILGDYVRGRYS 231
FRQL D +E C+K ++ F E +A + LQD+AQ L Y+ RY
Sbjct: 229 FRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYP 288
Query: 232 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RLL DMY
Sbjct: 289 TQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMY 334
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 264 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 323
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 324 VPITRLLSDMY 334
>gi|432910588|ref|XP_004078428.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oryzias latipes]
Length = 404
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 119/208 (57%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
LM E E ARLLF AV W + + F L DQ+ LL+ SW ELF+L+ AQ S+P
Sbjct: 181 LMGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLH 240
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
++ L+ + ER+ V + I++ QE + + + L D +E C+K+++LF
Sbjct: 241 VAPLLAAAGLHASPMSAERV----VAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLF 296
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
T + GL D VE +Q+++QC L +YVR +Y QP RFGRLLL LPSLR V IE+L
Sbjct: 297 TSDAMGLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQL 356
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ LL DM SY P
Sbjct: 357 FFVRLVGKTPIETLLRDMLLSGSSYNWP 384
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 51/81 (62%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE +Q+++QC L +YVR +Y QP RFGRLLL LPSLR V IE+LFF
Sbjct: 302 GLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRL 361
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ LL DM SY
Sbjct: 362 VGKTPIETLLRDMLLSGSSYN 382
>gi|380027402|ref|XP_003697414.1| PREDICTED: COUP transcription factor 2-like [Apis florea]
Length = 393
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 152/321 (47%), Gaps = 56/321 (17%)
Query: 1 VQHERGPRK----------------PKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKI 44
VQHER PR P I + +H S P++P P L P S
Sbjct: 81 VQHERAPRNTSSLVAAARRGPSGLYPGIPHVYHAASN--PYHPLLYPALFPFKPTMSAFT 138
Query: 45 PPTVLYPP-------------------SGLKSPPPPSHHHPSMFLATHQPPP---HPGLL 82
P + P S ++ + P LAT + P + G
Sbjct: 139 PSVAHFLPRSPTTESLTVNTAKEDEVTSSEEAGSIDARIEPKEELATARLTPSIANSGST 198
Query: 83 QILMS-----AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLA 137
+ + + E E A+LLF AVRW R + F L RDQ +LL+ESW ELF+L A
Sbjct: 199 ECVSTFSILPTENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAA 258
Query: 138 QWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVIL 197
QW+ P + + L+ + + ER + +E + ++E+L + L D SE C+KA++L
Sbjct: 259 QWNFPVEEATLVPNDLSSERKET----LVDEARKLRELLGKCALLRVDHSEYACLKAIVL 314
Query: 198 FTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
F E+ GL + + LQ+Q + + R R GRLLL+LPS RA+ +ST++
Sbjct: 315 FKGESRGLCEPGRITALQEQTVAVFCE-------RDARRVGRLLLLLPSARALCRSTLQE 367
Query: 258 LFFKETIGDIPIQRLLGDMYT 278
L FK T+GD+ ++RLLGDM +
Sbjct: 368 LLFKPTVGDVSVERLLGDMVS 388
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 12/107 (11%)
Query: 260 FKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGDYVRGRYS 314
+E +G + R+ Y K+ E+ GL + + LQ+Q + +
Sbjct: 289 LRELLGKCALLRVDHSEYACLKAIVLFKGESRGLCEPGRITALQEQTVAVFCE------- 341
Query: 315 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 361
R R GRLLL+LPS RA+ +ST++ L FK T+GD+ ++RLLGDM +
Sbjct: 342 RDARRVGRLLLLLPSARALCRSTLQELLFKPTVGDVSVERLLGDMVS 388
>gi|301618212|ref|XP_002938509.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Xenopus (Silurana) tropicalis]
Length = 398
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 116/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF A+ W + + F DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 190 IMGIENICELAARLLFSAIEWAKNIPFFPDFQLSDQVSLLRMTWSELFVLNAAQCSMPLH 249
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA+ LFTP+
Sbjct: 250 VAPLLAAAGLHASPMSADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIALFTPDA 309
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE +Q+++QC L +YVR +Y QPTRFGRLLL LPSLR V IE+LFF
Sbjct: 310 VGLSDIGHVESIQEKSQCALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFFVR 369
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 370 LVGKTPIETLIRDMLLSGSSFNWP 393
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE +Q+++QC L +YVR +Y QPTRFGRLLL LPSLR V IE+LFF
Sbjct: 311 GLSDIGHVESIQEKSQCALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFFVRL 370
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 371 VGKTPIETLIRDMLLSGSSF 390
>gi|170586218|ref|XP_001897876.1| photoreceptor-specific nuclear receptor [Brugia malayi]
gi|158594271|gb|EDP32855.1| photoreceptor-specific nuclear receptor, putative [Brugia malayi]
Length = 486
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 109/190 (57%), Gaps = 13/190 (6%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E QE + RLLF+A++W + L F +LS RDQL LL+E+W +LFLL + QWS+P D L
Sbjct: 309 ENVQEASTRLLFLAIKWAKNLPSFASLSLRDQLKLLKENWCDLFLLSVFQWSLPMDKCPL 368
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+N L D + + + ++ R R D E C+KA++LF PET GL +
Sbjct: 369 LN------TLQTDP----SSFRYLNDLFFRIRSYGIDHGEFACLKAIVLFRPETRGLKNL 418
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+E LQDQAQ L + + P RFGRLLL+LP LR + IER+FF T G+
Sbjct: 419 VQIEDLQDQAQQTLAKHT---MNSSPARFGRLLLLLPLLRTISAEKIERMFFMATFGNTS 475
Query: 269 IQRLLGDMYT 278
I +++ MY
Sbjct: 476 IDQIICKMYN 485
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL + +E LQDQAQ L + + P RFGRLLL+LP LR + IER+FF
Sbjct: 411 ETRGLKNLVQIEDLQDQAQQTLAKHT---MNSSPARFGRLLLLLPLLRTISAEKIERMFF 467
Query: 344 KETIGDIPIQRLLGDMYT 361
T G+ I +++ MY
Sbjct: 468 MATFGNTSIDQIICKMYN 485
>gi|443685606|gb|ELT89160.1| hypothetical protein CAPTEDRAFT_171549 [Capitella teleta]
Length = 428
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ ++P
Sbjct: 220 IMGIENICELAARLLFSAVEWGRNIPFFPDLQVADQVALLRLAWSELFVLNAAQCAMPLH 279
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LF+ +
Sbjct: 280 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFSSDA 339
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D+ +E LQ++AQC L +Y R +Y QPTRFG+LLL LPSLR+V IE+LFF
Sbjct: 340 CGLSDSAHIESLQEKAQCALEEYDRSQYPNQPTRFGKLLLRLPSLRSVSAQVIEQLFFVR 399
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 400 LVGKTPIETLIRDMLLSGGSFNWP 423
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 55/86 (63%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + GL D+ +E LQ++AQC L +Y R +Y QPTRFG+LLL LPSLR+V IE+L
Sbjct: 336 SSDACGLSDSAHIESLQEKAQCALEEYDRSQYPNQPTRFGKLLLRLPSLRSVSAQVIEQL 395
Query: 342 FFKETIGDIPIQRLLGDMYTMEKSYG 367
FF +G PI+ L+ DM S+
Sbjct: 396 FFVRLVGKTPIETLIRDMLLSGGSFN 421
>gi|293349263|ref|XP_002727107.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Rattus
norvegicus]
Length = 397
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 111/196 (56%), Gaps = 18/196 (9%)
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN- 150
ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 208 HETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCPLLAP 267
Query: 151 ---CEKARERLPPDDVRVNNEIKLIQEILA------RFRQLSPDGSECGCMKAVILFTPE 201
++ RL + L R+L G+ C C F+PE
Sbjct: 268 PEASSSSQGRLALASGKQTKRCGLTNYFWGCGVRPTSEREL--KGAHCCC------FSPE 319
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 261
T GL D VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF+
Sbjct: 320 TRGLKDPDHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFR 379
Query: 262 ETIGDIPIQRLLGDMY 277
+TIG+ P+++LL DM+
Sbjct: 380 KTIGNTPMEKLLCDMF 395
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 242 LMLPSLRAVRQSTIERLFFKETIGDIPI-QRLLGDMYTMEKSYETPGLVDAQPVEMLQDQ 300
L L S + ++ + F+ G P +R L + S ET GL D VE LQDQ
Sbjct: 278 LALASGKQTKRCGLTNYFWG--CGVRPTSERELKGAHCCCFSPETRGLKDPDHVEALQDQ 335
Query: 301 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 360
+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+ P+++LL DM+
Sbjct: 336 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF 395
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 119/208 (57%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF A+ W + + F DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 189 IMGIENICELAARLLFSAIEWAKNIPFFPDFQLSDQVSLLRMTWSELFVLNAAQCSMPLH 248
Query: 145 LSLLINCEKARERLPPDDVRVN------NEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
++ L+ AR L + + + I++ QE + + + L D +E C+KA+ LF
Sbjct: 249 VAPLL----ARAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIALF 304
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
TP+ GL D VE +Q+++QC L +YVR +Y QPTRFGRLLL LPSLR V IE+L
Sbjct: 305 TPDAVGLSDIGHVESIQEKSQCALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQL 364
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ L+ DM S+ P
Sbjct: 365 FFVRLVGKTPIETLIRDMLLSGSSFNWP 392
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE +Q+++QC L +YVR +Y QPTRFGRLLL LPSLR V IE+LFF
Sbjct: 310 GLSDIGHVESIQEKSQCALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFFVRL 369
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 370 VGKTPIETLIRDMLLSGSSF 389
>gi|327287768|ref|XP_003228600.1| PREDICTED: COUP transcription factor 2-like, partial [Anolis
carolinensis]
Length = 266
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 128/234 (54%), Gaps = 12/234 (5%)
Query: 55 LKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQT 114
L++ P P+ H + L PG +M E E ARLLF A+ W + + F
Sbjct: 38 LRAEPYPTSRHGAQCL-------QPG---NIMGIENICELAARLLFSAIEWAKNIPFFPD 87
Query: 115 LSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD--VRVNNEIKLI 172
DQ+ LL+ +W ELF+L+ AQ ++P ++ L+ P + V + I++
Sbjct: 88 FQLADQVCLLRMTWSELFVLNAAQCAMPLHVAPLLAAAGLHASPMPAERVVAFMDHIRVF 147
Query: 173 QEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR 232
QE + + + L D +E C+KA++LFTP+ GL D VE +Q+++QC L +YVR +Y
Sbjct: 148 QEQVEKLKALHVDSAEYSCLKAIVLFTPDAVGLTDLCHVENVQEKSQCALEEYVRNQYPS 207
Query: 233 QPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
QP+RFGRLLL LPSLR V IE+LFF +G PI+ L+ DM + P
Sbjct: 208 QPSRFGRLLLRLPSLRIVSAPVIEQLFFVRLVGKTPIETLIRDMLLSGSGFNWP 261
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 50/73 (68%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE +Q+++QC L +YVR +Y QP+RFGRLLL LPSLR V IE+LFF
Sbjct: 179 GLTDLCHVENVQEKSQCALEEYVRNQYPSQPSRFGRLLLRLPSLRIVSAPVIEQLFFVRL 238
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 239 VGKTPIETLIRDM 251
>gi|44969507|gb|AAS49607.1| nuclear receptor subfamily 2 group F member 1 [Scyliorhinus
canicula]
Length = 273
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 101 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 160
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 161 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 220
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S I
Sbjct: 221 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 273
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 39/55 (70%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 338
+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S I
Sbjct: 219 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 273
>gi|339245569|ref|XP_003378710.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
gi|316972367|gb|EFV56045.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
Length = 547
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 114/187 (60%), Gaps = 2/187 (1%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
ET+ RLL M V+W + L F LS RDQ++LL+ESW +LFLL L QWS+P S L++
Sbjct: 359 ETSMRLLLMVVKWAKSLPSFMALSFRDQVILLEESWSDLFLLTLYQWSMPMGSSALLSHS 418
Query: 153 KARERLPPDDVRVN--NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP 210
+ + + ++++ +Q++LARFR + D +E C+KA+ LF PE GL D
Sbjct: 419 SFVQFAGGINSNIFRPSDLRYLQDLLARFRSCALDPAEFVCLKAIALFRPEARGLKDPAQ 478
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
+E+LQDQAQ +L + + RFGRLLLMLP LR V IE LFF I + ++
Sbjct: 479 IELLQDQAQYMLIQHTQISQPNPAQRFGRLLLMLPLLRTVGTEKIEILFFNHGIRCMQME 538
Query: 271 RLLGDMY 277
++L DMY
Sbjct: 539 KILCDMY 545
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL D +E+LQDQAQ +L + + RFGRLLLMLP LR V IE LFF
Sbjct: 469 EARGLKDPAQIELLQDQAQYMLIQHTQISQPNPAQRFGRLLLMLPLLRTVGTEKIEILFF 528
Query: 344 KETIGDIPIQRLLGDMY 360
I + ++++L DMY
Sbjct: 529 NHGIRCMQMEKILCDMY 545
>gi|260834489|ref|XP_002612243.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
gi|229297618|gb|EEN68252.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
Length = 375
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 146/299 (48%), Gaps = 32/299 (10%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPP 60
VQHERGPR I Q ++ + S P + S P P L
Sbjct: 85 VQHERGPRNSTIRKQLAQ--YMKDTSRCESAQQACPTFLGSPAYLPYRALVPVTLTDGCA 142
Query: 61 PSHHHPSMFLATHQPPPH---PGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSK 117
H ++F QP P L + AE QE ARLL M + W+R + F TLS
Sbjct: 143 ADFKHSTIF----QPVPRYPVEVLQRWTCKAEPVQEAAARLLNMTLHWLRSIPAFLTLSS 198
Query: 118 RDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVN------NEIKL 171
DQ LLLQ SW+E+FLL LAQW++P D L +PPD + ++++
Sbjct: 199 HDQHLLLQSSWQEMFLLGLAQWALPMDPKQL----AVEAGVPPDQSPADRLQTFLQQVQM 254
Query: 172 IQEILARFRQLSPDGSECGCMKAVILF-TPET-----------PGLVDAQPVEMLQDQAQ 219
+QE L +F QL D E C+K ++LF T ET L D V +LQDQ Q
Sbjct: 255 LQETLHKFHQLQVDAVEYACLKGIVLFKTGETISQTTCCFTDVQSLRDPGTVAVLQDQTQ 314
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI-GDIPIQRLLGDMY 277
++ QP RFG+LLL+L SLR V++S++E +FF +T+ G + + +L+ DMY
Sbjct: 315 LSFSHHIEMHKPGQPFRFGKLLLLLSSLREVQRSSLESVFFTKTMTGGVSMDQLVLDMY 373
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ L D V +LQDQ Q ++ QP RFG+LLL+L SLR V++S++E +FF
Sbjct: 296 DVQSLRDPGTVAVLQDQTQLSFSHHIEMHKPGQPFRFGKLLLLLSSLREVQRSSLESVFF 355
Query: 344 KETI-GDIPIQRLLGDMY 360
+T+ G + + +L+ DMY
Sbjct: 356 TKTMTGGVSMDQLVLDMY 373
>gi|44964709|gb|AAS49526.1| nuclear receptor subfamily 2 group F number 1 [Protopterus dolloi]
Length = 273
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ++LL+ +W ELF+L+ AQ S+P
Sbjct: 101 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVVLLRLTWSELFVLNAAQCSMPLH 160
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT
Sbjct: 161 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHLDSAEYSCLKAIVLFTSGA 220
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S I
Sbjct: 221 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 273
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 338
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S I
Sbjct: 222 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 273
>gi|125772581|ref|XP_001357592.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|195159108|ref|XP_002020424.1| GL13521 [Drosophila persimilis]
gi|54637324|gb|EAL26726.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|194117193|gb|EDW39236.1| GL13521 [Drosophila persimilis]
Length = 454
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 122/241 (50%), Gaps = 33/241 (13%)
Query: 70 LATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWK 129
LAT PP P L M+AE +ET A LF V W++ + F L DQL+LL+ESWK
Sbjct: 217 LATRALPPTPPL----MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLMLLEESWK 272
Query: 130 ELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSEC 189
E F+L +AQ+ +P + + L+ +A V+ E+ Q++L + ++ D +E
Sbjct: 273 EFFILAMAQYLMPMNFAQLLFVYEAENNNREIVGMVSREVHAFQDVLNQLCHMNVDSTEY 332
Query: 190 GCMKAVILF-----------------------------TPETPGLVDAQPVEMLQDQAQC 220
C++A+ LF + E+ GL+++ V + + A+
Sbjct: 333 ECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARS 392
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
L +Y+ + QP RF LL ++ + V TIE LFF++TIGDI I RL+ DMY+
Sbjct: 393 ALHNYISRTHPNQPLRFQTLLGVVSMMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQR 452
Query: 281 K 281
K
Sbjct: 453 K 453
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y+ + QP RF LL ++ + V TIE L
Sbjct: 371 SAESRGLLESGKVAAMHNDARSALHNYISRTHPNQPLRFQTLLGVVSMMHKVSSFTIEEL 430
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 431 FFRKTIGDITIVRLISDMYSQRK 453
>gi|195113207|ref|XP_002001159.1| GI22125 [Drosophila mojavensis]
gi|193917753|gb|EDW16620.1| GI22125 [Drosophila mojavensis]
Length = 450
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 121/241 (50%), Gaps = 33/241 (13%)
Query: 70 LATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWK 129
LAT PP P L M+AE +ET A LF V W++ + F L DQLLLL+ESWK
Sbjct: 213 LATRALPPTPPL----MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWK 268
Query: 130 ELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSEC 189
E F+L +AQ+ +P + + L+ ++ V E+ Q++L + L+ D +E
Sbjct: 269 EFFILAMAQYLMPMNFAQLLFVYESENSNRDIVSVVAREVHAFQDVLNQLCHLNIDSTEY 328
Query: 190 GCMKAVILF-----------------------------TPETPGLVDAQPVEMLQDQAQC 220
C++A+ LF + E+ GL+++ V + + A+
Sbjct: 329 ECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESNKVASMHNDARN 388
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
L +Y+ + QP RF LL ++ + V TIE LFF++TIGDI I RL+ DMY+
Sbjct: 389 ALHNYISRTHPNQPLRFQTLLGVVSLMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQR 448
Query: 281 K 281
K
Sbjct: 449 K 449
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y+ + QP RF LL ++ + V TIE L
Sbjct: 367 SAESRGLLESNKVASMHNDARNALHNYISRTHPNQPLRFQTLLGVVSLMHKVSSFTIEEL 426
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 427 FFRKTIGDITIVRLISDMYSQRK 449
>gi|44964649|gb|AAS49525.1| nuclear receptor subfamily 2 group F number 1 [Latimeria chalumnae]
Length = 274
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 101/173 (58%), Gaps = 2/173 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 102 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 161
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 162 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 221
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
GL D +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S I
Sbjct: 222 CGLSDVAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 274
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 338
+ GL D +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S I
Sbjct: 220 DACGLSDVAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVI 274
>gi|312078554|ref|XP_003141789.1| hypothetical protein LOAG_06205 [Loa loa]
gi|307763047|gb|EFO22281.1| hypothetical protein LOAG_06205 [Loa loa]
Length = 493
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 109/190 (57%), Gaps = 13/190 (6%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E QE + RLLF+A++W + L F +LS RDQL LL+E+W +LFLL + QWS+P + L
Sbjct: 316 ESVQEASTRLLFLAIKWAKNLPSFASLSFRDQLKLLKENWCDLFLLSVFQWSLPMEKCPL 375
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+N A + P + + + ++ R R D E C+KA++LF PET GL +
Sbjct: 376 LN---ALQTDP-------SSFRYLNDLFFRIRTYGIDHGEFACLKALVLFRPETRGLKNL 425
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE LQDQAQ L R + P RFGRLLL+LP LR + IERLFF T G+
Sbjct: 426 AQVEDLQDQAQQTL---ARHTMNSSPARFGRLLLLLPLLRTISAEKIERLFFMATFGNTS 482
Query: 269 IQRLLGDMYT 278
+++ MY
Sbjct: 483 FDQIICKMYN 492
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL + VE LQDQAQ L R + P RFGRLLL+LP LR + IERLFF
Sbjct: 418 ETRGLKNLAQVEDLQDQAQQTL---ARHTMNSSPARFGRLLLLLPLLRTISAEKIERLFF 474
Query: 344 KETIGDIPIQRLLGDMYT 361
T G+ +++ MY
Sbjct: 475 MATFGNTSFDQIICKMYN 492
>gi|195452812|ref|XP_002073511.1| GK14159 [Drosophila willistoni]
gi|194169596|gb|EDW84497.1| GK14159 [Drosophila willistoni]
Length = 457
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 120/241 (49%), Gaps = 33/241 (13%)
Query: 70 LATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWK 129
LAT PP P L M+AE +ET A LF V W++ + F L DQL+LL+ESWK
Sbjct: 220 LATRALPPTPPL----MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLMLLEESWK 275
Query: 130 ELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSEC 189
E F+L +AQ+ +P + S L+ ++ V E+ Q++L + + D +E
Sbjct: 276 EFFILAMAQYLMPMNFSQLLFVYESENSNREIVGIVAREVHAFQDVLNQLCHFNIDSTEY 335
Query: 190 GCMKAVILF-----------------------------TPETPGLVDAQPVEMLQDQAQC 220
C++A+ LF + E+ GL+++ V + + A+
Sbjct: 336 ECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVAAMHNDARN 395
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
L +Y+ + QP RF LL ++ + V TIE LFF++TIGDI I RL+ DMY+
Sbjct: 396 ALHNYISRTHPNQPLRFQTLLGVVSQMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQR 455
Query: 281 K 281
K
Sbjct: 456 K 456
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y+ + QP RF LL ++ + V TIE L
Sbjct: 374 SAESRGLLESSKVAAMHNDARNALHNYISRTHPNQPLRFQTLLGVVSQMHKVSSFTIEEL 433
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 434 FFRKTIGDITIVRLISDMYSQRK 456
>gi|241707738|ref|XP_002403220.1| zinc finger, C4 type, putative [Ixodes scapularis]
gi|215505031|gb|EEC14525.1| zinc finger, C4 type, putative [Ixodes scapularis]
Length = 299
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 116/213 (54%), Gaps = 35/213 (16%)
Query: 70 LATHQPPPHPGLLQILMSA-EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESW 128
L+ H PH ++L + E E+ ARLLFM V+W++ + L RDQL LL+E W
Sbjct: 112 LSAHAQYPH----EVLAAYPETICESAARLLFMNVKWMKTVTALTALPMRDQLTLLEEGW 167
Query: 129 KELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVN---NEIKLIQEILARFRQLSPD 185
+ELF+L AQ+ +P +++ L+ P RV +EI+ QEI+ARF+++ D
Sbjct: 168 RELFVLSAAQFMLPLEVAPLLA-AAGLSSEPSTSERVATLVSEIRNFQEIIARFKEMQVD 226
Query: 186 GSECGCMKAVILF-TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLML 244
+E C+KA++LF T E C+ P RFG+LLL L
Sbjct: 227 ATEYACVKAILLFKTCEC-------------SSTNCM------------PFRFGKLLLTL 261
Query: 245 PSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
P LR V + IE LFF++TIG IPI+RLL DMY
Sbjct: 262 PCLRTVSATAIEDLFFRKTIGAIPIERLLCDMY 294
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 34/44 (77%)
Query: 317 PTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 360
P RFG+LLL LP LR V + IE LFF++TIG IPI+RLL DMY
Sbjct: 251 PFRFGKLLLTLPCLRTVSATAIEDLFFRKTIGAIPIERLLCDMY 294
>gi|241647785|ref|XP_002409993.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
gi|215501485|gb|EEC10979.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
Length = 342
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 23/206 (11%)
Query: 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDL 145
++ E ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QW +P +
Sbjct: 144 VTQESVYETSARLLFMAVKWAKNLPSFSNLPFRDQVILLEETWSELFLLCAIQWCLPLEA 203
Query: 146 SLLIN-CEKARERLPPDDVRVN---NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPE 201
S L + E A P + +++L+QE+LARFR + D +E C+KA++LF
Sbjct: 204 SPLFSPAEHAALAAHPANPGPKAPLADVRLLQELLARFRAIGVDPAEFACLKAILLFKAA 263
Query: 202 ---------TPGLVDAQPVEMLQDQA-QCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVR 251
+P + + +L A +G Y RFGRLLLMLPSLR V
Sbjct: 264 SRVSTKLLGSPRPLSVHRISLLYRTATNAGVGVY---------RRFGRLLLMLPSLRYVP 314
Query: 252 QSTIERLFFKETIGDIPIQRLLGDMY 277
+E L+F+ TIG+ P+++LL DM+
Sbjct: 315 AERVEALYFQRTIGNTPMEKLLCDMF 340
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 319 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 360
RFGRLLLMLPSLR V +E L+F+ TIG+ P+++LL DM+
Sbjct: 299 RFGRLLLMLPSLRYVPAERVEALYFQRTIGNTPMEKLLCDMF 340
>gi|426233871|ref|XP_004010932.1| PREDICTED: photoreceptor-specific nuclear receptor [Ovis aries]
Length = 516
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 113/186 (60%), Gaps = 11/186 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW-SIPWDLSLLINC 151
ET+ARLLFMAV+W + L F L RDQ+ + L W ++ L
Sbjct: 339 ETSARLLFMAVKWAKNLPVFSNLPFRDQV------YSSAGLASQLGWGTVRQPSHLPSPP 392
Query: 152 EKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
++ RL V + E +++QE ++RFR L+ D +E CMKA++LF PET GL D + V
Sbjct: 393 SSSQGRL----VLASAETRILQETVSRFRALAVDPTEFACMKALVLFKPETRGLKDPEHV 448
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
E LQDQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF++TIG+ P+++
Sbjct: 449 EALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFFRKTIGNTPMEK 508
Query: 272 LLGDMY 277
LL DM+
Sbjct: 509 LLCDMF 514
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + +E LFF
Sbjct: 438 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITSERVELLFF 497
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 498 RKTIGNTPMEKLLCDMF 514
>gi|156389667|ref|XP_001635112.1| predicted protein [Nematostella vectensis]
gi|156222202|gb|EDO43049.1| predicted protein [Nematostella vectensis]
Length = 355
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 108/182 (59%), Gaps = 10/182 (5%)
Query: 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDL 145
+S++ Q+ RLL ++R+ R + F L RDQ++LL+E WKELFLL A W++P ++
Sbjct: 162 VSSKNIQDAATRLLSASIRFARNVPCFTRLPFRDQIILLEEGWKELFLLDAAYWALPLEI 221
Query: 146 SLLI----NCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPE 201
+ L+ C R +EIKL+QE+LAR R D +E C+KA++LF PE
Sbjct: 222 ASLLAVTGGCHGDSYRHKA------SEIKLLQELLARLRSFQMDLNELACLKAIVLFRPE 275
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 261
T GL D+ V+ +QD Q +L + ++ P+RFG+LLL + L ++ + IE + F+
Sbjct: 276 TKGLKDSDQVDKIQDHIQLLLAHHTMTKHPTHPSRFGKLLLSISPLHSLAEKPIEDVLFR 335
Query: 262 ET 263
+T
Sbjct: 336 KT 337
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D+ V+ +QD Q +L + ++ P+RFG+LLL + L ++ + IE + F
Sbjct: 275 ETKGLKDSDQVDKIQDHIQLLLAHHTMTKHPTHPSRFGKLLLSISPLHSLAEKPIEDVLF 334
Query: 344 KET 346
++T
Sbjct: 335 RKT 337
>gi|194765110|ref|XP_001964670.1| GF22927 [Drosophila ananassae]
gi|190614942|gb|EDV30466.1| GF22927 [Drosophila ananassae]
Length = 456
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 122/241 (50%), Gaps = 33/241 (13%)
Query: 70 LATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWK 129
LAT PP P L M+AE +ET A LF V W++ + F L DQL+LL+ESWK
Sbjct: 219 LATRALPPTPPL----MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLMLLEESWK 274
Query: 130 ELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSEC 189
E F+L +AQ+ +P + + L+ ++ V E+ Q++L + L+ D +E
Sbjct: 275 EFFILAMAQYLMPMNFAQLLFVYESENANREIMGMVTREVHAFQDVLNQLCHLNIDSTEY 334
Query: 190 GCMKAVILF-----------------------------TPETPGLVDAQPVEMLQDQAQC 220
C++A+ LF + E+ GL+++ V + + A+
Sbjct: 335 ECLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESKGLLESGKVAAMHNDARS 394
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
L +Y++ + QP RF LL ++ + V TIE LFF++TIGDI I RL+ DMY+
Sbjct: 395 ALHNYIQRTHPAQPLRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQR 454
Query: 281 K 281
K
Sbjct: 455 K 455
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y++ + QP RF LL ++ + V TIE L
Sbjct: 373 SAESKGLLESGKVAAMHNDARSALHNYIQRTHPAQPLRFQTLLGVVQLMHKVSSFTIEEL 432
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 433 FFRKTIGDITIVRLISDMYSQRK 455
>gi|345497210|ref|XP_001599315.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nasonia
vitripennis]
Length = 417
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 118/198 (59%), Gaps = 13/198 (6%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L+ AE E A+LLF+AV+W R ++ F LS RDQ +LL+ESW ELF+L AQW+ P +
Sbjct: 230 LLPAENVYEFAAKLLFLAVKWPRSISSFLQLSYRDQAILLEESWCELFVLTAAQWNFPVE 289
Query: 145 LSLLINCEKARERLPPDDVRV-NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
S LI L PD ++ ++E + ++E+LAR L D SE C+KA++LF E+
Sbjct: 290 ESQLIP-----AHLSPDRKQILSDEARRLRELLARCAILRIDHSEYACLKAIVLFKGESR 344
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 263
GL DA V LQ+Q +L D R R G LLL+LP RA+ + ++ L FK T
Sbjct: 345 GLCDAARVTALQEQTVSVLSD-------RGAGRIGHLLLLLPPARALCRRILQELLFKPT 397
Query: 264 IGDIPIQRLLGDMYTMEK 281
+GD+ ++RLL DM +
Sbjct: 398 VGDVSVERLLDDMINATR 415
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 260 FKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGDYVRGRYS 314
+E + I R+ Y K+ E+ GL DA V LQ+Q +L D
Sbjct: 313 LRELLARCAILRIDHSEYACLKAIVLFKGESRGLCDAARVTALQEQTVSVLSD------- 365
Query: 315 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364
R R G LLL+LP RA+ + ++ L FK T+GD+ ++RLL DM +
Sbjct: 366 RGAGRIGHLLLLLPPARALCRRILQELLFKPTVGDVSVERLLDDMINATR 415
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 117/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
++ E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 202 ILGIENICELAARMLFSAVEWARNIPFFPDLQVPDQVALLRLTWSELFVLNAAQCSMPVH 261
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
+ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 262 AAPLLAAAGLHASPMSADRVVAFMDHIRVFQEQVEKLKVLHVDSAEYSCIKAIVLFTTDA 321
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QP RFG+LLL LPSLR+V S IE+LFF
Sbjct: 322 CGLSDVAHVEGLQEKSQCALEEYVRSQYPNQPNRFGKLLLRLPSLRSVSSSVIEQLFFVR 381
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 382 LVGKTPIETLIRDMLLSGSSFNWP 405
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 260 FKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGDYVRGRYS 314
F+E + + + + Y+ K+ + GL D VE LQ+++QC L +YVR +Y
Sbjct: 291 FQEQVEKLKVLHVDSAEYSCIKAIVLFTTDACGLSDVAHVEGLQEKSQCALEEYVRSQYP 350
Query: 315 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYG 367
QP RFG+LLL LPSLR+V S IE+LFF +G PI+ L+ DM S+
Sbjct: 351 NQPNRFGKLLLRLPSLRSVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFN 403
>gi|340722756|ref|XP_003399768.1| PREDICTED: COUP transcription factor 1-like [Bombus terrestris]
Length = 392
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 153/320 (47%), Gaps = 55/320 (17%)
Query: 1 VQHERGPRK----------------PKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKI 44
VQHER PR P I + +H S P++P P L P S
Sbjct: 81 VQHERAPRNTSSLVAAARRGPSVLYPGIPHVYHAASN--PYHPLLYPALFPFKPTMSAFT 138
Query: 45 PPTVLYPP------------------SGLKSPPPPSHHHPSMFLATHQPPP---HPGLLQ 83
P + P S ++ P S P LA+ + P + G +
Sbjct: 139 PSVAHFLPRSPTEPLTVNTAKEDEVTSSEEAGPIESRIEPKEELASARLAPSVTNSGATE 198
Query: 84 ILMS-----AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQ 138
+ S E E A+LLF AVRW R + F L RDQ +LL+ESW ELF+L AQ
Sbjct: 199 YISSFSILPTENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQ 258
Query: 139 WSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
W+ P D S L+ + + ER + +E++ ++E+LA+ L D SE C+KA++LF
Sbjct: 259 WNFPVDESTLVPNDLSSER----KETLVDEVRKLRELLAKCALLRVDHSEYACLKAIVLF 314
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
E+ GL + + LQ+Q + + R R GRLLL+LP RA+ +S ++ L
Sbjct: 315 KGESRGLCEPGRITALQEQTVAVFCE-------RDARRVGRLLLLLPPARALCRSILQEL 367
Query: 259 FFKETIGDIPIQRLLGDMYT 278
FK T+GD+ ++RLLGDM +
Sbjct: 368 LFKPTVGDVSVERLLGDMVS 387
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E+ GL + + LQ+Q + + R R GRLLL+LP RA+ +S ++ L F
Sbjct: 317 ESRGLCEPGRITALQEQTVAVFCE-------RDARRVGRLLLLLPPARALCRSILQELLF 369
Query: 344 KETIGDIPIQRLLGDMYT 361
K T+GD+ ++RLLGDM +
Sbjct: 370 KPTVGDVSVERLLGDMVS 387
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 104/183 (56%), Gaps = 1/183 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E +LLF A+ W + + F TL+ DQ+ L++ WKELF+L+L + P L+ +++
Sbjct: 133 ELATKLLFNAIEWAKNIPIFPTLTTGDQIALIKLGWKELFVLNLGKCQSPLRLNDVLS-N 191
Query: 153 KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
+ LP +K +Q + + L D +E C+KA+ILFTP+TP L ++ +
Sbjct: 192 SNLDGLPEYQATFYEHVKALQTQIDTLKSLQIDAAEYACLKAMILFTPDTPSLNNSAYIH 251
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQ++A L Y + +Y QP RFG+LLL L S+R + IE+LFF +G PI+ +
Sbjct: 252 TLQEKAMNALESYTKTKYPLQPARFGKLLLRLSSIRPINTVVIEQLFFTWLVGKTPIETI 311
Query: 273 LGD 275
+ D
Sbjct: 312 IQD 314
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+TP L ++ + LQ++A L Y + +Y QP RFG+LLL L S+R + IE+LFF
Sbjct: 240 DTPSLNNSAYIHTLQEKAMNALESYTKTKYPLQPARFGKLLLRLSSIRPINTVVIEQLFF 299
Query: 344 KETIGDIPIQRLLGD 358
+G PI+ ++ D
Sbjct: 300 TWLVGKTPIETIIQD 314
>gi|363745928|ref|XP_003643465.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Gallus gallus]
Length = 300
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 138/278 (49%), Gaps = 32/278 (11%)
Query: 31 PDLLPPNGISSVKIPPTVLYP-----PSG---------------LKSPPPPSHHHPSMFL 70
P L PP + +IPPT PSG L++ P P+ + S +
Sbjct: 28 PPLYPPAAVQRGRIPPTHSSASPTAMPSGEYFNGQPVSELISQLLRAEPYPAARYGSQYA 87
Query: 71 ATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKE 130
+M + E ARLLF V W R + F L DQ+ LL+ SW E
Sbjct: 88 QQGS----------VMGIDNICELAARLLFSTVEWARNIPFFPELPVSDQVALLRLSWSE 137
Query: 131 LFLLHLAQWSIPWDLSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSE 188
LF+L+ AQ ++P ++ L+ D V ++I++ Q+ + + +L D +E
Sbjct: 138 LFVLNAAQSALPLHMAPLLAAAGFHASPMSADRVVSFMDQIRIFQDQVEKLNRLQVDSAE 197
Query: 189 CGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLR 248
C+KA+ LFTP+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LR
Sbjct: 198 YSCLKAIALFTPDACGLSDPAHVEGLQEKAQVALTEYVRSQYPSQPQRFGRLLLRLPALR 257
Query: 249 AVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
AV + I +LFF +G PI+ L+ DM ++ P
Sbjct: 258 AVPAALISQLFFMRLVGKTPIETLIRDMLLSGSTFNWP 295
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV + I +LFF
Sbjct: 213 GLSDPAHVEGLQEKAQVALTEYVRSQYPSQPQRFGRLLLRLPALRAVPAALISQLFFMRL 272
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 273 VGKTPIETLIRDM 285
>gi|156394045|ref|XP_001636637.1| predicted protein [Nematostella vectensis]
gi|156223742|gb|EDO44574.1| predicted protein [Nematostella vectensis]
Length = 196
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 112/189 (59%), Gaps = 3/189 (1%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
EK E ARLLFM W + + F LS DQ+ LL+E+W ++F+++L QW++P++++ +
Sbjct: 1 EKTSEMAARLLFMTAHWAKKVKHFSELSHFDQVTLLRENWSKVFIINLVQWAMPFEIAPI 60
Query: 149 INCEKARERLPPDDV-RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
++ E+ P + +V + + + E++ + QL +E +KA+ LF P+T L D
Sbjct: 61 VS--DIVEKTPGQHLDKVLHTMGKLNEVVFKLVQLQLSRAEFSLLKALALFNPDTEQLAD 118
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDI 267
A ++ +Q++ Q L +Y+R Y + P RFG++LL L +L AV IE +FF + +G
Sbjct: 119 AVQIQAVQNKTQNALEEYIRVHYPQTPNRFGQVLLRLTALGAVECKIIEHVFFNKLLGST 178
Query: 268 PIQRLLGDM 276
I L+ D+
Sbjct: 179 SIYTLVDDI 187
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+T L DA ++ +Q++ Q L +Y+R Y + P RFG++LL L +L AV IE +FF
Sbjct: 112 DTEQLADAVQIQAVQNKTQNALEEYIRVHYPQTPNRFGQVLLRLTALGAVECKIIEHVFF 171
Query: 344 KETIGDIPIQRLLGDM 359
+ +G I L+ D+
Sbjct: 172 NKLLGSTSIYTLVDDI 187
>gi|410949022|ref|XP_003981224.1| PREDICTED: COUP transcription factor 1, partial [Felis catus]
Length = 335
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 106/204 (51%), Gaps = 14/204 (6%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 137 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 196
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + C
Sbjct: 197 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKXXXXXXXXXAC----------- 245
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 246 -GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 304
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 305 LVGKTPIETLIRDMLLSGSSFNWP 328
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 246 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 305
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 306 VGKTPIETLIRDMLLSGSSFN 326
>gi|351709883|gb|EHB12802.1| COUP transcription factor 1 [Heterocephalus glaber]
Length = 251
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 104/215 (48%), Gaps = 28/215 (13%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIP-- 142
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 45 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 104
Query: 143 -----------WDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGC 191
W+ L+ ++ P + S G E C
Sbjct: 105 VAGGGEGSKRTWERGFLLCVARSLHEFSPQK---------------ETHRESQKGGEQSC 149
Query: 192 MKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVR 251
V+ GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V
Sbjct: 150 SDWVLGLGHYACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVS 209
Query: 252 QSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
S IE+LFF +G PI+ L+ DM S+ P
Sbjct: 210 SSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWP 244
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 162 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 221
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 222 VGKTPIETLIRDMLLSGSSF 241
>gi|345325512|ref|XP_001506145.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Ornithorhynchus anatinus]
Length = 342
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 116/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF V W R + F L DQ+ LL+ SW ELF+L+ AQ ++P
Sbjct: 134 VMGIDNICELAARLLFSTVEWARNIPFFPELPVSDQVSLLRLSWSELFVLNAAQSALPLH 193
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V ++I++ Q+ + + +L D +E C+KA+ LFTP+
Sbjct: 194 MAPLLAAAGFHASPMSADRVVSFMDQIRVFQDQVEKLSRLQVDSAEYSCLKAIALFTPDA 253
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 254 CGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMR 313
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM ++ P
Sbjct: 314 LVGKTPIETLIRDMLLSGSTFNWP 337
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 255 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 314
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 315 VGKTPIETLIRDM 327
>gi|148233922|ref|NP_001080181.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus laevis]
gi|33416678|gb|AAH56043.1| Nr2f6 protein [Xenopus laevis]
Length = 389
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 126/234 (53%), Gaps = 12/234 (5%)
Query: 55 LKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQT 114
L++ P P+ + S + T Q +M + E ARLLF V W R + F
Sbjct: 161 LRAEPYPASRYGSQY--TQQGS--------VMGIDNICELAARLLFSTVEWSRSIPYFPE 210
Query: 115 LSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD--VRVNNEIKLI 172
L+ DQ+ LL+ SW ELF+L AQ ++P ++ L+ D V ++I+L
Sbjct: 211 LAVADQVSLLRLSWSELFVLSAAQSALPLHMAPLLAAAGFHSSPMSADRVVSFMDQIRLF 270
Query: 173 QEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR 232
Q+ + + +L D +E C+KA+ LFT + GL D VE LQ++AQ L +YVR +Y
Sbjct: 271 QDQVEKLNRLQVDSAEYACLKAIALFTSDACGLTDPAHVESLQEKAQVALTEYVRAQYPS 330
Query: 233 QPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
QP RFGRLLL LP+LRAV S I +LFF +G PI+ L+ DM S+ P
Sbjct: 331 QPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDMLLSGSSFNWP 384
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 302 GLTDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 361
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 362 VGKTPIETLIRDMLLSGSSF 381
>gi|351714332|gb|EHB17251.1| Photoreceptor-specific nuclear receptor [Heterocephalus glaber]
Length = 351
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC 151
QE +ARLLFMAV+W + L +L RDQ++LL+E+W ELFLL QWS+P D L++
Sbjct: 205 QEISARLLFMAVKWAKSLPVLSSLPFRDQVILLEEAWGELFLLGAIQWSLPLDSCPLLSP 264
Query: 152 EKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+A + E + +QE +ARF+ L+ D +E CMKA++LF PETPGL D +
Sbjct: 265 AEASAAGSSQGRLALASGERRFLQETVARFQVLAVDPTEFACMKALVLFKPETPGLKDPE 324
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTR 236
VE LQDQ+Q +L + + + QP R
Sbjct: 325 HVEALQDQSQMMLSQHSKAHHPSQPVR 351
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 253 STIERLFFKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGD 307
++ ER F +ET+ + + + K+ ETPGL D + VE LQDQ+Q +L
Sbjct: 280 ASGERRFLQETVARFQVLAVDPTEFACMKALVLFKPETPGLKDPEHVEALQDQSQMMLSQ 339
Query: 308 YVRGRYSRQPTR 319
+ + + QP R
Sbjct: 340 HSKAHHPSQPVR 351
>gi|7706515|ref|NP_057430.1| photoreceptor-specific nuclear receptor isoform a [Homo sapiens]
gi|6651225|gb|AAF22227.1|AF148128_1 nuclear receptor [Homo sapiens]
gi|119598283|gb|EAW77877.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b
[Homo sapiens]
gi|325495505|gb|ADZ17358.1| photoreceptor cell-specific nuclear receptor variant 1 [Homo
sapiens]
Length = 367
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 94/150 (62%), Gaps = 10/150 (6%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 222 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 281
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E +++QE ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 282 EASAAGGAQGRL----TLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLK 337
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
D + VE LQDQ+Q +L + + + QP R
Sbjct: 338 DPEHVEALQDQSQVMLSQHSKAHHPSQPVR 367
>gi|324512063|gb|ADY45006.1| Steroid receptor seven-up, isoform B/C [Ascaris suum]
Length = 417
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 134/248 (54%), Gaps = 7/248 (2%)
Query: 34 LPPNGISSVKIPPTVLYPPSGLKSPPPPSHHHPSMF--LATHQPPPHPGLLQILMSAEKC 91
+PPN S T+L+ + L P S H ++ L +P P +M E
Sbjct: 152 IPPN--SQHPYASTLLFGDNLLSMTQPSSTHFSNVVAHLVRAEPYPPTNCSSTIMGIENI 209
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC 151
E A+LLF AV W + + F L + DQL LL+ SW ELF+++ AQ+ +P + L+
Sbjct: 210 YELGAKLLFSAVEWAKNIPFFGELIESDQLTLLRASWAELFVVNAAQFGMPVHAAPLLAA 269
Query: 152 E--KARERLPPDD-VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+ LPPD V + I++ Q + R + L D +E +KAVILF+ + GL D
Sbjct: 270 SVLHSTSPLPPDRLVLFMDRIRVFQGQVERLKSLHMDSAEFSSLKAVILFSADCCGLSDV 329
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q++ Q L +Y R + +Q RFGRLLL LPSLR + + IE+LFF + +G+ P
Sbjct: 330 MRVESIQEKVQSALEEYCRTQRQQQIGRFGRLLLRLPSLRTISSTMIEQLFFVKLVGETP 389
Query: 269 IQRLLGDM 276
I+ LL DM
Sbjct: 390 IEFLLRDM 397
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + GL D VE +Q++ Q L +Y R + +Q RFGRLLL LPSLR + + IE+L
Sbjct: 320 SADCCGLSDVMRVESIQEKVQSALEEYCRTQRQQQIGRFGRLLLRLPSLRTISSTMIEQL 379
Query: 342 FFKETIGDIPIQRLLGDM 359
FF + +G+ PI+ LL DM
Sbjct: 380 FFVKLVGETPIEFLLRDM 397
>gi|52345586|ref|NP_001004841.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
gi|49250456|gb|AAH74651.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF V W R + F L+ DQ+ LL+ SW ELF+L AQ ++P
Sbjct: 181 VMGIDNICELAARLLFSTVEWSRNIPYFPELAMADQVSLLRLSWSELFVLSAAQSALPLH 240
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V ++I+L Q+ + + +L D +E C+KA+ LFT +
Sbjct: 241 MAPLLAAAGFHASPMSADRVVSFMDQIRLFQDQVEKLNRLQVDSAEYACLKAIALFTSDA 300
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 301 CGLTDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMR 360
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 361 LVGKTPIETLIRDMLLSGSSFNWP 384
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 302 GLTDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 361
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 362 VGKTPIETLIRDMLLSGSSF 381
>gi|224151159|ref|XP_002199588.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Taeniopygia guttata]
Length = 318
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 140/271 (51%), Gaps = 12/271 (4%)
Query: 18 QDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPPPSHHHPSMFLATHQPPP 77
Q ++ P + SP+ LP G P + L L++ P P+ + + + QP
Sbjct: 53 QRGRIPPSHSGGSPNALPAAGDFFNGQPVSELIS-QLLRAEPYPAARYGAQY--AQQPGG 109
Query: 78 HPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLA 137
M+ + E ARLLF V W R + F L DQ+ LL+ SW ELF+L+ A
Sbjct: 110 A-------MAIDNICELAARLLFSTVEWARNIPFFPELPVSDQVALLRLSWSELFVLNAA 162
Query: 138 QWSIPWDLSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAV 195
Q ++P ++ L+ D V ++I++ QE + + +L D +E C+KA+
Sbjct: 163 QSALPLHMAPLLAAAGFHASPMSADRVVAFMDQIRVFQEQVEKLNRLQVDSAEYSCLKAI 222
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
LFTP+ GL D VE LQ++AQ L +Y R ++ QP RFGRLLL LP+LRAV + I
Sbjct: 223 ALFTPDACGLSDPAHVETLQEKAQVALTEYERAQFPAQPQRFGRLLLRLPALRAVPAALI 282
Query: 256 ERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
+LFF +G PI+ L+ DM ++ P
Sbjct: 283 SQLFFMRLVGKTPIETLIRDMLLSGSTFNWP 313
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +Y R ++ QP RFGRLLL LP+LRAV + I +LFF
Sbjct: 231 GLSDPAHVETLQEKAQVALTEYERAQFPAQPQRFGRLLLRLPALRAVPAALISQLFFMRL 290
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 291 VGKTPIETLIRDM 303
>gi|348556980|ref|XP_003464298.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Cavia porcellus]
Length = 396
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 133/271 (49%), Gaps = 22/271 (8%)
Query: 27 PHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQI-- 84
PH P PP S PP G P PP + L P+P
Sbjct: 132 PHALPGAAPPTAGS----PPGSALTAGGDAFPGPPVSELIAQLLRAE---PYPAAAGRFG 184
Query: 85 ---LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSI 141
++ + E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++
Sbjct: 185 GGAVLGIDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAAL 244
Query: 142 PWDLSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAV 195
P + L+ A ER V ++++ QE + + +L D +E GC+KA+
Sbjct: 245 PLHTASLLAAAGLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAI 300
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
LFTP+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I
Sbjct: 301 ALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYPTQPQRFGRLLLRLPALRAVPASLI 360
Query: 256 ERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
+LFF +G PI+ L+ DM ++ P
Sbjct: 361 SQLFFMRLVGKTPIETLIRDMLLSGSTFSWP 391
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 309 GLSDPAHVESLQEKAQVALTEYVRAQYPTQPQRFGRLLLRLPALRAVPASLISQLFFMRL 368
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 369 VGKTPIETLIRDM 381
>gi|20806167|ref|NP_620813.1| nuclear receptor subfamily 2 group F member 6 [Rattus norvegicus]
gi|10720384|sp|O09017.1|NR2F6_RAT RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUPg; AltName: Full=Ovalbumin upstream
promoter gamma nuclear receptor; AltName:
Full=V-erbA-related protein 2; Short=EAR-2
gi|2197123|gb|AAB61296.1| ovalbumin upstream promoter gamma nuclear receptor rCOUPg [Rattus
norvegicus]
Length = 390
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 115/208 (55%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
++ + E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ +P
Sbjct: 183 VLGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVGLLRLSWSELFVLNAAQAPVPLH 242
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
+ L+ A ER V ++++ QE + + +L D +E GC+KA+ LF
Sbjct: 243 TAPLLAAAGLHAGPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALF 298
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
TP+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +L
Sbjct: 299 TPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQL 358
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ L+ DM ++ P
Sbjct: 359 FFMRLVGKTPIETLIRDMLLSGSTFNWP 386
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 304 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 363
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 364 VGKTPIETLIRDM 376
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 119/208 (57%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF V W R + F L DQ+ LL+ SW ELF+L+ AQ ++P
Sbjct: 524 VMGIDNICELAARLLFSTVEWARNIPFFPELPVADQVALLRLSWSELFVLNAAQSALPLH 583
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
++ L+ A +R+ V ++I++ QE + + +L D +E C+KA+ LF
Sbjct: 584 MAPLLAAAGFHAAPMAADRV----VSFMDQIRVFQEQVDKLNRLQVDSAEYSCLKAIALF 639
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
TP+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV + I +L
Sbjct: 640 TPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPAALISQL 699
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ L+ DM ++ P
Sbjct: 700 FFMRLVGKTPIETLIRDMLLSGSTFNWP 727
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV + I +LFF
Sbjct: 645 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPAALISQLFFMRL 704
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 705 VGKTPIETLIRDM 717
>gi|51860121|gb|AAU11312.1| COUP-TF1 nuclear orphan receptor, partial [Hydra vulgaris]
Length = 453
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 116/216 (53%), Gaps = 6/216 (2%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L + E RLLF AV W R + F L DQ+ LL+ SW EL++L +Q I +
Sbjct: 111 LFGGDSIYEMATRLLFNAVEWARNVPFFSALPTSDQIALLKSSWSELYILSTSQHCIAFQ 170
Query: 145 LSL-LINCEKARERLPPDDVRVNN-EIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ + E+ + N +K+ +E++ RF+ L D +E C+KA++LF P++
Sbjct: 171 INARALTSEQNLSEIKKRSEGANEASVKMFEELVERFKNLQTDAAEFSCLKALVLFNPDS 230
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP--TRFGRLLLMLPSLRAVRQSTIERLFF 260
PGL + +E LQ++AQ L DY+R + + Q RFG+LLL LP+L +R +TIE LFF
Sbjct: 231 PGLGNPSLIENLQEKAQSALEDYLRQQNATQSYHNRFGKLLLRLPALSLIRPATIEALFF 290
Query: 261 KETIGDIPIQRLLGDM--YTMEKSYETPGLVDAQPV 294
G I L+G M Y + + T + + P
Sbjct: 291 PRHHGSQNIDSLVGSMLLYGLGSNNNTSFVNNGIPA 326
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP--TRFGRLLLMLPSLRAVRQSTIERL 341
++PGL + +E LQ++AQ L DY+R + + Q RFG+LLL LP+L +R +TIE L
Sbjct: 229 DSPGLGNPSLIENLQEKAQSALEDYLRQQNATQSYHNRFGKLLLRLPALSLIRPATIEAL 288
Query: 342 FFKETIGDIPIQRLLGDM 359
FF G I L+G M
Sbjct: 289 FFPRHHGSQNIDSLVGSM 306
>gi|350424111|ref|XP_003493692.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 392
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 150/320 (46%), Gaps = 55/320 (17%)
Query: 1 VQHERGPRK----------------PKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKI 44
VQHER PR P I + +H S P++P P L P S
Sbjct: 81 VQHERAPRNTSSLVAAARRGPSVLYPGIPHVYHAASN--PYHPLLYPALFPFKPTMSAFT 138
Query: 45 PPTVLYPP------------------SGLKSPPPPSHHHPSMFLATHQPPP---HPGLLQ 83
P + P S ++ P + P LA + P +
Sbjct: 139 PSVAHFLPRSPTEPLTVNTAKEDEVTSSEEAGPIETRIEPKEELACARLAPSVTNSAATD 198
Query: 84 ILMS-----AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQ 138
+ S E E A+LLF AVRW R + F L RDQ +LL+ESW ELF+L AQ
Sbjct: 199 YISSFSILPTENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQ 258
Query: 139 WSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
W+ P + S L+ + + ER + +E++ ++E+LA+ L D SE C+KA++LF
Sbjct: 259 WNFPVEESTLVPNDLSSER----KETLVDEVRKLRELLAKCALLRVDHSEYACLKAIVLF 314
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
E+ GL + + LQ+Q + + R R GRLLL+LP RA+ +S ++ L
Sbjct: 315 KGESRGLCEPGRITALQEQTVAVFCE-------RDARRVGRLLLLLPPARALCRSILQEL 367
Query: 259 FFKETIGDIPIQRLLGDMYT 278
FK T+GD+ ++RLLGDM +
Sbjct: 368 LFKPTVGDVSVERLLGDMVS 387
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E+ GL + + LQ+Q + + R R GRLLL+LP RA+ +S ++ L F
Sbjct: 317 ESRGLCEPGRITALQEQTVAVFCE-------RDARRVGRLLLLLPPARALCRSILQELLF 369
Query: 344 KETIGDIPIQRLLGDMYT 361
K T+GD+ ++RLLGDM +
Sbjct: 370 KPTVGDVSVERLLGDMVS 387
>gi|295656541|gb|ADG26733.1| COUP transcription factor 1 [Platynereis dumerilii]
Length = 302
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ SW ELF+L+ AQ S+P
Sbjct: 122 IMGIENICELAARLLFSAVEWSRNIPFFPDLQVTDQVALLRLSWSELFVLNAAQCSMPLH 181
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KAV+LF+ +
Sbjct: 182 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAVVLFSSDA 241
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
GL D +E LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR+V IE+LFF
Sbjct: 242 CGLSDTAHIESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRSVSAQVIEQLFF 299
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 44/62 (70%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + GL D +E LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR+V IE+L
Sbjct: 238 SSDACGLSDTAHIESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRSVSAQVIEQL 297
Query: 342 FF 343
FF
Sbjct: 298 FF 299
>gi|28630300|gb|AAN73342.1| nuclear receptor subfamily 2 group F [Petromyzon marinus]
Length = 283
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 2/163 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ AQ ++P
Sbjct: 121 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLVWSELFVLNAAQCAMPLH 180
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 181 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTTDA 240
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLP 245
GL DA +E LQ+++QC L +YVR +Y QPTRFG+LLL LP
Sbjct: 241 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLP 283
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLP 328
+ GL DA +E LQ+++QC L +YVR +Y QPTRFG+LLL LP
Sbjct: 239 DACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLP 283
>gi|383858852|ref|XP_003704913.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Megachile rotundata]
Length = 392
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 115/194 (59%), Gaps = 11/194 (5%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
++ E E A+LLF AVRW R + F L RDQ +LL+ESW ELF+L AQW+ P +
Sbjct: 205 ILPTENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVE 264
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
+ L+ + ER +V V +E++ ++E+L + L D SE C+KA++LF E G
Sbjct: 265 ETTLVPNDLLSER---KEVLV-DEVRRLRELLGKCALLRVDHSEYACLKAIVLFKGEARG 320
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + V LQ+Q + + R R GRLLL+LP RA+ +ST++ L FK T+
Sbjct: 321 LCEPGRVTALQEQTVAVFCE-------RDARRVGRLLLLLPPARALCRSTLQELLFKPTV 373
Query: 265 GDIPIQRLLGDMYT 278
GD+ ++RLLGDM +
Sbjct: 374 GDVSVERLLGDMVS 387
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 12/107 (11%)
Query: 260 FKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGDYVRGRYS 314
+E +G + R+ Y K+ E GL + V LQ+Q + +
Sbjct: 288 LRELLGKCALLRVDHSEYACLKAIVLFKGEARGLCEPGRVTALQEQTVAVFCE------- 340
Query: 315 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 361
R R GRLLL+LP RA+ +ST++ L FK T+GD+ ++RLLGDM +
Sbjct: 341 RDARRVGRLLLLLPPARALCRSTLQELLFKPTVGDVSVERLLGDMVS 387
>gi|16797878|gb|AAL29197.1|AF323684_1 nuclear receptor AmNR4 isoform B [Acropora millepora]
Length = 408
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 115/217 (52%), Gaps = 16/217 (7%)
Query: 76 PPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLH 135
PP G+ + M E E RLLF+ V W + + F+ L DQL+LLQ +W +LF+L
Sbjct: 189 PPTLGVSSLSM--EYVYEIATRLLFLTVDWAQSIQAFRCLENSDQLVLLQSTWSDLFMLG 246
Query: 136 LAQWSIPWDLSLLINC-----------EKARERLPPD---DVRVNNEIKLIQEILARFRQ 181
+AQ S + LS L++ A+ R P D + ++I ++E+L +
Sbjct: 247 VAQCSSSFPLSPLLSLAAFHMEHRDSESNAQNRQPSSVNSDPNLIDKIVTVKELLFSLEK 306
Query: 182 LSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLL 241
L D E +KA++LF + L +++ VE +QD+A C L +YV ++ P RF ++L
Sbjct: 307 LELDSVEYAFLKAIVLFNSDCLNLKNSKQVERIQDKAHCALKNYVENKHPNFPERFAKIL 366
Query: 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 278
L LP+ R + Q E LFF IG + I+ ++ ++ +
Sbjct: 367 LRLPATRMLTQRAAEELFFSPLIGTVKIESIMTNIIS 403
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
L +++ VE +QD+A C L +YV ++ P RF ++LL LP+ R + Q E LFF
Sbjct: 329 NLKNSKQVERIQDKAHCALKNYVENKHPNFPERFAKILLRLPATRMLTQRAAEELFFSPL 388
Query: 347 IGDIPIQRLLGDMYT 361
IG + I+ ++ ++ +
Sbjct: 389 IGTVKIESIMTNIIS 403
>gi|55140659|gb|AAV41874.1| tailless [Musca domestica]
Length = 442
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 153/346 (44%), Gaps = 75/346 (21%)
Query: 1 VQHERGPRKPKI--HNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSP 58
VQHERGPR + H A ++D+ + P + N + P GL P
Sbjct: 106 VQHERGPRNSTLRRHMAMYKDAMMGGSEMPQIPAEILMNTAALTGFP--------GLPMP 157
Query: 59 PPPSHH-HPSMFLATHQPP-----------------PHPGLLQI---------------- 84
P SHH HPS+ A PP HPG
Sbjct: 158 IPGSHHMHPSLAGAFPAPPSVLDLSVPRVPQHPMHQAHPGFFAPTAAYMNALAATRVLPP 217
Query: 85 ---LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSI 141
LM+AE +ET A LF + W++ + F L DQL LL++SWKE F+L +AQ+ +
Sbjct: 218 TPPLMAAEHIKETAAEHLFKNINWIKNVPSFGELPLPDQLQLLEDSWKEFFILAMAQYLM 277
Query: 142 PWDLSLLINCEKARERLPPDDVR--VNNEIKLIQEILARFRQLSPDGSECGCMKAVILF- 198
P + + L+ ++ P DV V E+ Q++L + L+ D E ++A+ LF
Sbjct: 278 PMNFTQLLFVYESEN--PNRDVTGLVTREVHAFQDVLNQLCHLNIDSHEYELIRALTLFR 335
Query: 199 -----------------------TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 235
+ E+ GL+++ + L D+++ L Y+ + QP
Sbjct: 336 RPGSDDLANSSLSTSNGSPNSSISAESRGLIESTKIAALHDESRNALIGYIARLHPGQPM 395
Query: 236 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
RF ++ +L + V IE LFF++TIGDI I RL+GDMY+ K
Sbjct: 396 RFQSIMSVLTQMHKVSSFAIEELFFRKTIGDITIVRLIGDMYSQRK 441
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ + L D+++ L Y+ + QP RF ++ +L + V IE L
Sbjct: 359 SAESRGLIESTKIAALHDESRNALIGYIARLHPGQPMRFQSIMSVLTQMHKVSSFAIEEL 418
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+GDMY+ K
Sbjct: 419 FFRKTIGDITIVRLIGDMYSQRK 441
>gi|482930|emb|CAA54097.1| EAR2 [Mus musculus]
Length = 390
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 116/208 (55%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
++ + E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P
Sbjct: 183 VLGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLH 242
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
+ L+ A ER V ++++ QE + + +L D +E GC+KA+ LF
Sbjct: 243 TAPLLAAAGLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALF 298
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
TP+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +L
Sbjct: 299 TPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISKL 358
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ L+ DM ++ P
Sbjct: 359 FFMRLVGKTPIETLIRDMLLSGSTFNWP 386
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 304 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISKLFFMRL 363
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 364 VGKTPIETLIRDM 376
>gi|449688240|ref|XP_002168741.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Hydra magnipapillata]
Length = 334
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 113/204 (55%), Gaps = 6/204 (2%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSL-LINCEKAR 155
RLLF AV W R + F L DQ+ LL+ SW EL++L +Q I + ++ + E+
Sbjct: 4 RLLFNAVEWARNVPFFSALPTSDQIALLKSSWSELYILSTSQHCIAFQINARALTSEQNL 63
Query: 156 ERLPPDDVRVNN-EIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEML 214
+ N +K+ +E++ RF+ L D +E C+KA++LF P++PGL + +E L
Sbjct: 64 SEIKKRSEGANEASVKMFEELVERFKNLQTDAAEFSCLKALVLFNPDSPGLGNPSLIENL 123
Query: 215 QDQAQCILGDYVRGRYSRQP--TRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
Q++AQ L DY+R + + Q RFG+LLL LP+L +R +TIE LFF G I L
Sbjct: 124 QEKAQSALEDYLRQQNATQSYHNRFGKLLLRLPALSLIRPATIEALFFPRHHGSQNIDSL 183
Query: 273 LGDM--YTMEKSYETPGLVDAQPV 294
+G M Y + + T + + P
Sbjct: 184 VGSMLLYGLGSNNNTSFVNNGIPA 207
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP--TRFGRLLLMLPSLRAVRQSTIERL 341
++PGL + +E LQ++AQ L DY+R + + Q RFG+LLL LP+L +R +TIE L
Sbjct: 110 DSPGLGNPSLIENLQEKAQSALEDYLRQQNATQSYHNRFGKLLLRLPALSLIRPATIEAL 169
Query: 342 FFKETIGDIPIQRLLGDM 359
FF G I L+G M
Sbjct: 170 FFPRHHGSQNIDSLVGSM 187
>gi|149412644|ref|XP_001506287.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Ornithorhynchus anatinus]
Length = 596
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ S LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCSQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLEIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + S E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++PI ++ + ME +
Sbjct: 568 GNVPIDSIIPYILKMETA 585
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + S E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++PI ++ + ME +
Sbjct: 566 LIGNVPIDSIIPYILKMETA 585
>gi|16797876|gb|AAL29196.1|AF323683_1 nuclear receptor AmNR4 isoform A [Acropora millepora]
Length = 416
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 115/217 (52%), Gaps = 16/217 (7%)
Query: 76 PPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLH 135
PP G+ +S E E RLLF+ V W + + F+ L DQL+LLQ +W +LF+L
Sbjct: 197 PPTLGVSS--LSMEYVYEIATRLLFLTVDWAQSIQAFRCLENSDQLVLLQSTWSDLFMLG 254
Query: 136 LAQWSIPWDLSLLINC-----------EKARERLPPD---DVRVNNEIKLIQEILARFRQ 181
+AQ S + LS L++ A+ R P D + ++I ++E+L +
Sbjct: 255 VAQCSSSFPLSPLLSLAAFHMEHRDSESNAQNRQPSSVNSDPNLIDKIVTVKELLFSLEK 314
Query: 182 LSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLL 241
L D E +KA++LF + L +++ VE +QD+A C L +YV ++ P RF ++L
Sbjct: 315 LELDSVEYAFLKAIVLFNSDCLNLKNSKQVERIQDKAHCALKNYVENKHPNFPERFAKIL 374
Query: 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 278
L LP+ R + Q E LFF IG + I+ ++ ++ +
Sbjct: 375 LRLPATRMLTQRAAEELFFSPLIGTVKIESIMTNIIS 411
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
L +++ VE +QD+A C L +YV ++ P RF ++LL LP+ R + Q E LFF
Sbjct: 337 NLKNSKQVERIQDKAHCALKNYVENKHPNFPERFAKILLRLPATRMLTQRAAEELFFSPL 396
Query: 347 IGDIPIQRLLGDMYT 361
IG + I+ ++ ++ +
Sbjct: 397 IGTVKIESIMTNIIS 411
>gi|112807199|ref|NP_034280.2| nuclear receptor subfamily 2 group F member 6 [Mus musculus]
gi|341941192|sp|P43136.2|NR2F6_MOUSE RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUP transcription factor 3;
Short=COUP-TF3; AltName: Full=V-erbA-related protein 2;
Short=EAR-2
gi|14198162|gb|AAH08138.1| Nuclear receptor subfamily 2, group F, member 6 [Mus musculus]
gi|74143003|dbj|BAE42523.1| unnamed protein product [Mus musculus]
gi|74203464|dbj|BAE20887.1| unnamed protein product [Mus musculus]
gi|148696964|gb|EDL28911.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b [Mus
musculus]
Length = 390
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 116/208 (55%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
++ + E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P
Sbjct: 183 VLGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLH 242
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
+ L+ A ER V ++++ QE + + +L D +E GC+KA+ LF
Sbjct: 243 TAPLLAAAGLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALF 298
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
TP+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +L
Sbjct: 299 TPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQL 358
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ L+ DM ++ P
Sbjct: 359 FFMRLVGKTPIETLIRDMLLSGSTFNWP 386
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 304 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 363
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 364 VGKTPIETLIRDM 376
>gi|332025246|gb|EGI65420.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 393
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 113/192 (58%), Gaps = 11/192 (5%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L+ E E A+LLF AVRW R + F L RDQ +LL+ESW ELF+L AQW+ P D
Sbjct: 206 LLPTENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVD 265
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
+ L++ + ER +V ++ +L +E+LA+ L D SE C+KA++LF E+
Sbjct: 266 ETTLVSMDLPTER---REVLLDKARRL-RELLAKCAALRVDHSEYACLKAIVLFKAESRN 321
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + V LQ+Q + + R R GRLLL+LP RA+ ++T+ L FK T+
Sbjct: 322 LCEPGRVSALQEQTVAVFCE-------RDARRVGRLLLLLPPARALCRATLHELLFKPTV 374
Query: 265 GDIPIQRLLGDM 276
GD+ ++RLLGDM
Sbjct: 375 GDVSVERLLGDM 386
Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E+ L + V LQ+Q + + R R GRLLL+LP RA+ ++T+ L F
Sbjct: 318 ESRNLCEPGRVSALQEQTVAVFCE-------RDARRVGRLLLLLPPARALCRATLHELLF 370
Query: 344 KETIGDIPIQRLLGDM 359
K T+GD+ ++RLLGDM
Sbjct: 371 KPTVGDVSVERLLGDM 386
>gi|402904691|ref|XP_003915174.1| PREDICTED: Usher syndrome type-1C protein-binding protein 1 [Papio
anubis]
Length = 952
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 752 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 811
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 812 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 867
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 868 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 927
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 928 TPIETLIRDMLLSGSTFNWP 947
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 865 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 924
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 925 VGKTPIETLIRDM 937
>gi|114675979|ref|XP_001173294.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pan
troglodytes]
gi|410209646|gb|JAA02042.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410259260|gb|JAA17596.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410296550|gb|JAA26875.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410337621|gb|JAA37757.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
Length = 404
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 204 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 263
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 264 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 319
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 320 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 379
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 380 TPIETLIRDMLLSGSTFNWP 399
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 317 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 376
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 377 VGKTPIETLIRDM 389
>gi|20070199|ref|NP_005225.2| nuclear receptor subfamily 2 group F member 6 [Homo sapiens]
gi|23503053|sp|P10588.2|NR2F6_HUMAN RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=V-erbA-related protein 2; Short=EAR-2
gi|119604986|gb|EAW84580.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127798390|gb|AAH02669.3| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799092|gb|AAH63018.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799948|gb|AAH84544.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|189054615|dbj|BAG37465.1| unnamed protein product [Homo sapiens]
gi|208966888|dbj|BAG73458.1| nuclear receptor subfamily 2, group F, member 6 [synthetic
construct]
gi|325495513|gb|ADZ17362.1| nuclear receptor V-erbA-related [Homo sapiens]
Length = 404
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 204 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 263
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 264 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 319
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 320 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 379
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 380 TPIETLIRDMLLSGSTFNWP 399
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 317 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 376
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 377 VGKTPIETLIRDM 389
>gi|358412829|ref|XP_002704762.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
gi|359066798|ref|XP_002688591.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
Length = 412
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 212 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 271
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 272 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 327
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 328 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 387
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 388 TPIETLIRDMLLSGSTFNWP 407
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 325 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 384
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 385 VGKTPIETLIRDM 397
>gi|73986038|ref|XP_852412.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform 1
[Canis lupus familiaris]
Length = 416
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 216 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 275
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 276 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 331
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 332 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 391
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 392 TPIETLIRDMLLSGSTFNWP 411
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 329 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 388
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 389 VGKTPIETLIRDM 401
>gi|355707900|gb|AES03100.1| nuclear receptor subfamily 2, group F, member 6 [Mustela putorius
furo]
Length = 214
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 117/213 (54%), Gaps = 10/213 (4%)
Query: 80 GLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW 139
G ++ + E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ
Sbjct: 2 GAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQA 61
Query: 140 SIPWDLSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMK 193
++P + L+ A ER V ++++ QE + + +L D +E GC+K
Sbjct: 62 ALPLHTAPLLAAAGLHAAPMAAER----AVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLK 117
Query: 194 AVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQS 253
A+ LFTP+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S
Sbjct: 118 AIALFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPAS 177
Query: 254 TIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
I +LFF +G PI+ L+ DM ++ P
Sbjct: 178 LISQLFFMRLVGKTPIETLIRDMLLSGSTFNWP 210
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 128 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 187
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 188 VGKTPIETLIRDM 200
>gi|311249241|ref|XP_003123537.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Sus
scrofa]
Length = 414
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 214 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 273
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 274 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 329
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 330 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 389
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 390 TPIETLIRDMLLSGSTFNWP 409
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 327 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 386
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 387 VGKTPIETLIRDM 399
>gi|170053585|ref|XP_001862743.1| tailless [Culex quinquefasciatus]
gi|167874052|gb|EDS37435.1| tailless [Culex quinquefasciatus]
Length = 397
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 145/302 (48%), Gaps = 37/302 (12%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLL--PPNGISSVKIPPTVLYPPSGLKSP 58
VQHERGPR + Q + + DL+ PP +S + + S SP
Sbjct: 105 VQHERGPRSSTLRK---QMAMFIAKDTPLRHDLMIPPPLPMSQQSMGLDLSIQRSAFFSP 161
Query: 59 PPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKR 118
S HP++F A P P L++A+ +E+ A+LLFM V +++ L PF L
Sbjct: 162 Q--SMVHPTLFPAMQSPHP-------LIAADAVRESAAQLLFMNVNFLKNLVPFTKLPLD 212
Query: 119 DQLLLLQESWKELFLLHLAQWSIPWDLS-LLINCEKAR-ERLPPDDVRVNNEIKLIQEIL 176
DQL+L +ESW+E F+L +AQ+ P + + LL+ E R P + E+++ QEIL
Sbjct: 213 DQLVLFEESWREFFILAVAQYLQPINFNHLLVAYEYLNTNRGEPVPECIIREVEIFQEIL 272
Query: 177 ARFRQLSPDGSECGCMKAVILFTPE---------------------TPGLVDAQPVEMLQ 215
A+ L D +E ++AV+L+ E + + + V L+
Sbjct: 273 AQIVALRVDINEFVYLRAVVLYKTEFDPESSISSSSSDGSDIISSTSKSIQEVSTVRALE 332
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
D A+ L Y+R R+ LL +LP+LR V TIE LFF+ IG P+ +LL D
Sbjct: 333 DGAKDALASYIRTCRPGPIDRYRALLQLLPALRNVSTYTIEELFFRRNIGPAPLLKLLLD 392
Query: 276 MY 277
Y
Sbjct: 393 FY 394
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 285 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 344
+ + + V L+D A+ L Y+R R+ LL +LP+LR V TIE LFF+
Sbjct: 319 SKSIQEVSTVRALEDGAKDALASYIRTCRPGPIDRYRALLQLLPALRNVSTYTIEELFFR 378
Query: 345 ETIGDIPIQRLLGDMY 360
IG P+ +LL D Y
Sbjct: 379 RNIGPAPLLKLLLDFY 394
>gi|431921971|gb|ELK19144.1| Nuclear receptor subfamily 2 group F member 6 [Pteropus alecto]
Length = 481
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 281 ELAARLLFSTVEWARHAPFFPDLPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 340
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 341 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 396
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 397 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 456
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 457 TPIETLIRDMLLSGSTFNWP 476
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 394 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 453
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 454 VGKTPIETLIRDM 466
>gi|296233223|ref|XP_002761927.1| PREDICTED: nuclear receptor subfamily 2 group F member 6
[Callithrix jacchus]
Length = 386
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 186 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 245
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 246 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 301
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 302 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 361
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 362 TPIETLIRDMLLSGSTFNWP 381
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 299 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 358
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 359 VGKTPIETLIRDM 371
>gi|395847866|ref|XP_003796585.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Otolemur
garnettii]
Length = 410
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 210 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 269
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 270 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 325
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 326 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 385
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 386 TPIETLIRDMLLSGSTFNWP 405
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 323 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 382
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 383 VGKTPIETLIRDM 395
>gi|387541468|gb|AFJ71361.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 404
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 204 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 263
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 264 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 319
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 320 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 379
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 380 TPIETLIRDMLLSGSTFNWP 399
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 314 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 373
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 374 MRLVGKTPIETLIRDM 389
>gi|354801981|gb|AER39752.1| retinoid X receptor [Sepia officinalis]
Length = 292
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 111/216 (51%), Gaps = 9/216 (4%)
Query: 62 SHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQL 121
SH P++ + P + I +AE+ LF V W + + F LS DQ+
Sbjct: 77 SHDCPTIEKEANSEEKDP-VTNIFQAAEE-------QLFTLVEWAKRIPHFTKLSLDDQV 128
Query: 122 LLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFR 180
LL+ W EL + + SIP +L+ R V+ +++ E++A+ R
Sbjct: 129 TLLRAGWNELLIAGFSHRSIPVKDGILLATGIHVHRSSAHHAGVDTIFDRVLSELVAKMR 188
Query: 181 QLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRL 240
++ D SE GC++A++LF P+ GLV Q VE L+++ L +Y + +Y + RF +L
Sbjct: 189 EMKMDKSELGCLRAIVLFNPDAKGLVSTQEVESLREKVYATLEEYCKCQYPEETGRFAKL 248
Query: 241 LLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
LL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 249 LLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 284
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GLV Q VE L+++ L +Y + +Y + RF +LLL LP+LR++ +E LFF
Sbjct: 209 DAKGLVSTQEVESLREKVYATLEEYCKCQYPEETGRFAKLLLRLPALRSIGLKCLEHLFF 268
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 269 FKLIGDTPIDTFLMEM 284
>gi|194384988|dbj|BAG60906.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 177 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 236
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 237 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 292
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 293 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 352
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 353 TPIETLIRDMLLSGSTFNWP 372
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 287 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 346
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 347 MRLVGKTPIETLIRDM 362
>gi|296486096|tpg|DAA28209.1| TPA: nuclear receptor subfamily 2, group F, member 6-like [Bos
taurus]
Length = 383
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 183 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 242
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 243 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 298
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 299 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 358
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 359 TPIETLIRDMLLSGSTFNWP 378
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 293 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 352
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 353 MRLVGKTPIETLIRDM 368
>gi|291241519|ref|XP_002740657.1| PREDICTED: Orphan nuclear receptor NR6A1, putative-like
[Saccoglossus kowalevskii]
Length = 404
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 96/188 (51%), Gaps = 32/188 (17%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E E A++LF +++ R + FQTLS DQ+LLL++ W ELFLLH A W P DL+ L
Sbjct: 249 EMLHEIAAQILFTSIKRARSVQTFQTLSFSDQILLLEDCWGELFLLHAAYW--PVDLATL 306
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
I +F+ + + G + F GL +
Sbjct: 307 I---------------------------VQFQGSADTAAGSGFDSLKVNFKE---GLGNT 336
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE LQDQAQ IL YV + + P RFG+LLL L SLR + IE LFF++TIG +P
Sbjct: 337 QQVEFLQDQAQLILAQYVNSKTPQNPARFGKLLLTLASLRTYKSEIIEELFFRKTIGKVP 396
Query: 269 IQRLLGDM 276
I+ + G +
Sbjct: 397 IEAIFGSV 404
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL + Q VE LQDQAQ IL YV + + P RFG+LLL L SLR + IE LFF++T
Sbjct: 332 GLGNTQQVEFLQDQAQLILAQYVNSKTPQNPARFGKLLLTLASLRTYKSEIIEELFFRKT 391
Query: 347 IGDIPIQRLLGDM 359
IG +PI+ + G +
Sbjct: 392 IGKVPIEAIFGSV 404
>gi|72148318|ref|XP_795547.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 483
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 105/204 (51%), Gaps = 17/204 (8%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L A +E +++ A+R + + PF+ L DQ LLQE W ELFLLH A W P D
Sbjct: 285 LSGASAIEEAATQIIIHALRTSKSVQPFRALDPWDQNSLLQECWAELFLLHAAYWP-PAD 343
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKL-----------IQEILARFRQLSPDGSECGCMK 193
L+ + L DD + + K IQEI R R L+ E ++
Sbjct: 344 FCALL----SHSHLRMDDAKTETDSKGATRRKSEVVDDIQEITVRLRTLNLSTHEFAFLE 399
Query: 194 AVILFTPETPG-LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQ 252
A++LF P+T G L + VE +DQ+Q +L Y + P RFG+LLL +P+L+ V
Sbjct: 400 AIVLFKPDTKGTLREKSKVEFFRDQSQVVLAQYENIVHPESPARFGKLLLTMPALKRVGT 459
Query: 253 STIERLFFKETIGDIPIQRLLGDM 276
+E LFF+ T+G + I+++L M
Sbjct: 460 ENLEELFFRRTLGKVQIEKILERM 483
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 288 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 347
L + VE +DQ+Q +L Y + P RFG+LLL +P+L+ V +E LFF+ T+
Sbjct: 412 LREKSKVEFFRDQSQVVLAQYENIVHPESPARFGKLLLTMPALKRVGTENLEELFFRRTL 471
Query: 348 GDIPIQRLLGDM 359
G + I+++L M
Sbjct: 472 GKVQIEKILERM 483
>gi|426228806|ref|XP_004008487.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6, partial [Ovis aries]
Length = 382
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 108/208 (51%), Gaps = 20/208 (9%)
Query: 95 TARLLFMAVRWVRCLAPFQTLSKRDQLLLLQE-----SWKELFLLHLAQWSIPWDLSLLI 149
ARLLF V W R F L D + SW ELF+L+ AQ ++P + L+
Sbjct: 174 AARLLFSTVEWARHAPFFPELPGADPVAPAARGGRRLSWSELFVLNAAQAALPLHTAPLL 233
Query: 150 NCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+
Sbjct: 234 AAAGLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDAC 289
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSL-----RAVRQSTIERL 258
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+L RAV S I +L
Sbjct: 290 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALGARRARAVPASLISQL 349
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ L+ DM ++ P
Sbjct: 350 FFMRLVGKTPIETLIRDMLLSGSTFNWP 377
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSL-----RAVRQSTI 338
+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+L RAV S I
Sbjct: 287 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALGARRARAVPASLI 346
Query: 339 ERLFFKETIGDIPIQRLLGDMYTMEKSY 366
+LFF +G PI+ L+ DM ++
Sbjct: 347 SQLFFMRLVGKTPIETLIRDMLLSGSTF 374
>gi|395516672|ref|XP_003762511.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Sarcophilus harrisii]
Length = 629
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ S LS ++
Sbjct: 421 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCSQVMSLSTILAAI 480
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 481 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 540
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + S E LFF I
Sbjct: 541 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTGLI 600
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 601 GNVSIDSIIPYILKMETA 618
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + S E LFF
Sbjct: 539 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTG 598
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 599 LIGNVSIDSIIPYILKMETA 618
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
LG Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLGAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ LG Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLGAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|126336217|ref|XP_001366331.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Monodelphis domestica]
Length = 596
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ S LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCSQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + S E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + S E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|344282642|ref|XP_003413082.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Loxodonta
africana]
Length = 408
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/190 (43%), Positives = 110/190 (57%), Gaps = 10/190 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 208 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 267
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 268 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 323
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 324 DPAHVESLQEKAQVALTEYVRAQYPAQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 383
Query: 267 IPIQRLLGDM 276
PI+ L+ DM
Sbjct: 384 TPIETLIRDM 393
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 318 DACGLSDPAHVESLQEKAQVALTEYVRAQYPAQPQRFGRLLLRLPALRAVPASLISQLFF 377
Query: 344 KETIGDIPIQRLLGDMY----TMEKSYG 367
+G PI+ L+ DM T +YG
Sbjct: 378 MRLVGKTPIETLIRDMLLSGSTFSWAYG 405
>gi|242008309|ref|XP_002424949.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212508563|gb|EEB12211.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 420
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 2/190 (1%)
Query: 88 AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSL 147
A CQ T +L + V W + + F +L DQ+LLL+ W EL + + S+ +
Sbjct: 225 ANICQATNTQL-YQLVEWAKHIPHFSSLPIEDQVLLLRAGWNELLIAAFSHRSVEVRDGI 283
Query: 148 LINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
++ R V +++ E++A+ R ++ D +E GC++++ILF PE GL
Sbjct: 284 VLGAGITVHRNSAHQAGVGTIFDRVLTELVAKMRDMNMDRTELGCLRSIILFNPEVRGLK 343
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
Q VE+L+++ L +Y R +P RF +LLL LP+LR++ +E LFF IGD
Sbjct: 344 SGQEVELLREKVYAALEEYTRVTRPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGD 403
Query: 267 IPIQRLLGDM 276
IPI L DM
Sbjct: 404 IPIDTFLMDM 413
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q VE+L+++ L +Y R +P RF +LLL LP+LR++ +E LFF
Sbjct: 338 EVRGLKSGQEVELLREKVYAALEEYTRVTRPEEPGRFAKLLLRLPALRSIGLKCLEHLFF 397
Query: 344 KETIGDIPIQRLLGDM 359
IGDIPI L DM
Sbjct: 398 FRLIGDIPIDTFLMDM 413
>gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]
Length = 408
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 104/187 (55%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T + LF V+W + + F +L DQ+LLL+ W EL + + SI ++++
Sbjct: 216 CQATN-KQLFQLVQWAKLIPHFTSLPMSDQVLLLRAGWNELLIAAFSHRSIQAQDAIVLA 274
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ V V N +++ E++ + +++ D +E GC++A+IL+ P G+ Q
Sbjct: 275 TGLTVNKTSAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPTCRGIKSVQ 334
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VEML+++ +L +Y R + +P RF +LLL LP+LR++ E LFF + IGD+PI
Sbjct: 335 EVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCSEHLFFFKLIGDVPI 394
Query: 270 QRLLGDM 276
L +M
Sbjct: 395 DTFLMEM 401
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
G+ Q VEML+++ +L +Y R + +P RF +LLL LP+LR++ E LFF +
Sbjct: 329 GIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCSEHLFFFKL 388
Query: 347 IGDIPIQRLLGDM 359
IGD+PI L +M
Sbjct: 389 IGDVPIDTFLMEM 401
>gi|449274063|gb|EMC83368.1| Nuclear receptor subfamily 2 group C member 2 [Columba livia]
Length = 596
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + +E Q++AQ L DYV+ Y R R+L+ LP+LR + S E LFF I
Sbjct: 508 LTSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++PI ++ + ME +
Sbjct: 568 GNVPIDSIIPYILKMETA 585
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL + +E Q++AQ L DYV+ Y R R+L+ LP+LR + S E LFF
Sbjct: 506 PGLTSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++PI ++ + ME +
Sbjct: 566 LIGNVPIDSIIPYILKMETA 585
>gi|224066723|ref|XP_002189996.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Taeniopygia guttata]
Length = 629
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 421 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILGAI 480
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE ++ DG E +KA++LF+P+ PG
Sbjct: 481 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKIDIDGYEYAYLKAIVLFSPDHPG 540
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + +E Q++AQ L DYV+ Y R R+L+ LP+LR + S E LFF I
Sbjct: 541 LTSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTGLI 600
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++PI ++ + ME +
Sbjct: 601 GNVPIDSIIPYILKMETA 618
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL + +E Q++AQ L DYV+ Y R R+L+ LP+LR + S E LFF
Sbjct: 539 PGLTSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTG 598
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++PI ++ + ME +
Sbjct: 599 LIGNVPIDSIIPYILKMETA 618
>gi|300796794|ref|NP_001178990.1| nuclear receptor subfamily 2 group C member 2 [Bos taurus]
gi|296474669|tpg|DAA16784.1| TPA: nuclear receptor subfamily 2 group C member 2-like [Bos
taurus]
gi|440903574|gb|ELR54213.1| Nuclear receptor subfamily 2 group C member 2 [Bos grunniens mutus]
Length = 611
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 403 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 462
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 463 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMARLDIDGYEYAYLKAIVLFSPDHPG 522
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + S E LFF I
Sbjct: 523 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTGLI 582
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 583 GNVSIDSIIPYILKMETA 600
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + S E LFF
Sbjct: 521 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTG 580
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 581 LIGNVSIDSIIPYILKMETA 600
>gi|216409732|dbj|BAH02303.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
Length = 401
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 11/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 202 ELAARLLFSTVEWAR-HGFFPELPVADQVALLRMSWSELFVLNAAQAALPLHTAPLLAAA 260
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 261 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 316
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 317 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 376
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 377 TPIETLIRDMLLSGSTFNWP 396
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 311 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 370
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 371 MRLVGKTPIETLIRDM 386
>gi|31065|emb|CAA31282.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 11/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 204 ELAARLLFSTVEWAR-HGFFPELPVADQVALLRMSWSELFVLNAAQAALPLHTAPLLAAA 262
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 263 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 318
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 319 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 378
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 379 TPIETLIRDMLLSGSTFNWP 398
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 313 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 372
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 373 MRLVGKTPIETLIRDM 388
>gi|432913184|ref|XP_004078947.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 116/207 (56%), Gaps = 10/207 (4%)
Query: 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDL 145
M + E ARLLF V W R + F L DQ+ LL+ SW ELF+L+ AQ S+P +
Sbjct: 199 MGIDNICELAARLLFSTVEWARNIPYFPELPVSDQVALLRLSWSELFILNAAQSSLPLHM 258
Query: 146 SLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFT 199
+ L+ + ER+ V +++++ Q+ + + +L D +E C+KA+ LF+
Sbjct: 259 APLLAAAGFHSSPMSAERV----VSFMDQVRMFQDQVDKLTRLQVDSAEYSCLKAIALFS 314
Query: 200 PETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
P+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV + I +LF
Sbjct: 315 PDACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPANLISQLF 374
Query: 260 FKETIGDIPIQRLLGDMYTMEKSYETP 286
F +G PI+ L+ DM S P
Sbjct: 375 FMRLVGKTPIETLIRDMQLSGSSISWP 401
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV + I +LFF
Sbjct: 316 DACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPANLISQLFF 375
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 376 MRLVGKTPIETLIRDM 391
>gi|307196423|gb|EFN78012.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 394
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 112/193 (58%), Gaps = 13/193 (6%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L+ E E A+LLF AVRW R + F L RDQ +LL+ESW ELF+L AQW+ D
Sbjct: 207 LLPTENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFSVD 266
Query: 145 LSLLINCEKARERLPPDDVRV-NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+ L+ + LPP+ + ++ + ++E+LA+ L D SE C+KA++LF E+
Sbjct: 267 ETSLVPVD-----LPPERREILVDKARRLRELLAKCVALRVDHSEYACLKAIVLFKAESR 321
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 263
GL + V LQ+Q + + R R GRLLL+LP RA+ + T+ L FK T
Sbjct: 322 GLCEPGRVSALQEQTVAVFCE-------RDARRVGRLLLLLPPARALCRVTLHELLFKPT 374
Query: 264 IGDIPIQRLLGDM 276
+G++ ++RLLGDM
Sbjct: 375 VGEVSVERLLGDM 387
>gi|426249719|ref|XP_004018597.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Ovis
aries]
Length = 596
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMARLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + S E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + S E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSSITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L DQ++LL+ W EL + + S+ +L+ R
Sbjct: 282 LFTLVEWAKRIPHFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 341
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
+ V + +++ E++++ + + D SE GC++A++LF P+ GL +A VE L+++
Sbjct: 342 SAHNAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREK 401
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 402 VYATLESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 460
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL +A VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 385 DAKGLSNAAEVEALREKVYATLESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 444
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 445 FKLIGDTPIDTFLMEM 460
>gi|314955486|gb|ADT64884.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 2/195 (1%)
Query: 83 QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIP 142
I +A CQ T +L F V W + + F +L DQ+LLL+ W EL + + S+
Sbjct: 203 NICQAANICQATNKQL-FQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSME 261
Query: 143 WDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPE 201
+++ R V +++ E++A+ R++ D +E GC+++VILF P+
Sbjct: 262 VKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPD 321
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 261
GL Q VEML+++ L +Y R + +P RF +LLL LP+LR++ +E LFF
Sbjct: 322 VRGLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFF 381
Query: 262 ETIGDIPIQRLLGDM 276
IGD PI L +M
Sbjct: 382 RLIGDAPIDTFLMEM 396
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL Q VEML+++ L +Y R + +P RF +LLL LP+LR++ +E LFF
Sbjct: 324 GLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRL 383
Query: 347 IGDIPIQRLLGDM 359
IGD PI L +M
Sbjct: 384 IGDAPIDTFLMEM 396
>gi|74902124|sp|Q5I7G2.1|RXR_LYMST RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X
receptor; Short=LymRXR
gi|57164664|gb|AAW34268.1| retinoid X receptor [Lymnaea stagnalis]
Length = 436
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 243 CQ-AADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLA 301
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++AV+LF P+ GL Q
Sbjct: 302 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAVVLFNPDAKGLTAVQ 361
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 362 EVEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPI 421
Query: 270 QRLLGDM 276
L +M
Sbjct: 422 DTFLMEM 428
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 353 DAKGLTAVQEVEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFF 412
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 413 FKLIGDQPIDTFLMEM 428
>gi|301087323|gb|ADK60866.1| retinoid X receptor [Haliotis diversicolor]
Length = 441
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 248 CQ-AADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIAVKDGILLA 306
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ GL Q
Sbjct: 307 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLSAVQ 366
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 367 EVEQLREKVYASLEEYCKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 426
Query: 270 QRLLGDM 276
L +M
Sbjct: 427 DTFLMEM 433
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 358 DAKGLSAVQEVEQLREKVYASLEEYCKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 417
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 418 FKLIGDTPIDTFLMEM 433
>gi|426339581|ref|XP_004033724.1| PREDICTED: nuclear receptor subfamily 2 group C member 2, partial
[Gorilla gorilla gorilla]
Length = 616
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 408 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 467
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 468 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 527
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 528 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 587
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 588 GNVSIDSIIPYILKMETA 605
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 526 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 585
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 586 LIGNVSIDSIIPYILKMETA 605
>gi|311772275|pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
gi|311772276|pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 12/216 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E+ +RLLF+++ W R + FQ L + L++ W ELF L
Sbjct: 27 PSPMPEYLNV----HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTL 82
Query: 135 HLAQWSIPWDLSLLINC-------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDG 186
LAQ + LS ++ ++L D ++ V I +QE +L DG
Sbjct: 83 GLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDG 142
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+ PGL +E Q+ AQ L DYV+ YS R R+L+ LP+
Sbjct: 143 YEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPA 202
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
LR + + E LFF IG++ I ++ + ME +
Sbjct: 203 LRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETA 238
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q+ AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 159 PGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFFTG 218
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 219 LIGNVSIDSIIPYILKMETA 238
>gi|432854604|ref|XP_004067983.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 127/238 (53%), Gaps = 12/238 (5%)
Query: 55 LKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQT 114
L++ P PS + + + G +M + E ARLLF + W R + F
Sbjct: 170 LRAEPYPSSRYGAPYAQAQMQASASGT--SVMGIDSICELAARLLFSTIEWARNIPYFPE 227
Query: 115 LSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK------ARERLPPDDVRVNNE 168
L +Q+ LL+ SW ELF+L+ AQ ++P ++ L+ + ER+ V ++
Sbjct: 228 LPVSEQVALLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERV----VSFMDQ 283
Query: 169 IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRG 228
+++ Q+ + + +L D +E C+KA+ LF+P+ GL D VE LQ++AQ L +Y R
Sbjct: 284 VRVFQDQVDKLNRLQVDSAEYSCLKAIALFSPDACGLTDPAHVESLQEKAQVALTEYERL 343
Query: 229 RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
+Y QP RFGRLLL LP+LRAV S I +LFF +G PI+ L+ DM S P
Sbjct: 344 QYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDMQLSGSSISWP 401
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 49/76 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 316 DACGLTDPAHVESLQEKAQVALTEYERLQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 375
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 376 MRLVGKTPIETLIRDM 391
>gi|390432209|gb|AFL91696.1| retinoid X receptor isoform a [Azumapecten farreri]
Length = 446
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W R + F L DQ++LL+ W EL + + SI +L+
Sbjct: 253 CQ-AADKQLFTLVAWARRIPHFTELPLEDQVILLRAGWNELLIAAFSHRSIVVKDGILLA 311
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++AR R++ D +E GC++A++LF P+ GL Q
Sbjct: 312 TGLHVHRSSAHQAGVGTIFDRVLTELVARMREMKMDKTELGCLRAIVLFNPDAKGLSAIQ 371
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 372 EVEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 431
Query: 270 QRLLGDM 276
L +M
Sbjct: 432 DTFLMEM 438
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 363 DAKGLSAIQEVEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 422
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 423 FKLIGDTPIDTFLMEM 438
>gi|301753845|ref|XP_002912831.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6-like, partial [Ailuropoda melanoleuca]
Length = 323
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 113/210 (53%), Gaps = 9/210 (4%)
Query: 77 PHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHL 136
PHP L + E ARLLF V W R F L DQ+ LL+ SW ELF+L+
Sbjct: 118 PHPALXXXXXXIDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNX 177
Query: 137 AQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVI 196
+ + + E+A V ++++ QE + + +L D SE GC+KA+
Sbjct: 178 PLLAAAGLHAAPMAAERA--------VAFMDQVRAFQEQVDKLGRLQVD-SEYGCLKAIA 228
Query: 197 LFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIE 256
LFTP+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I
Sbjct: 229 LFTPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLIS 288
Query: 257 RLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
+LFF +G PI+ L+ DM ++ P
Sbjct: 289 QLFFMRLVGKTPIETLIRDMLLSGSTFNWP 318
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 233 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 292
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 293 MRLVGKTPIETLIRDM 308
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 125/238 (52%), Gaps = 17/238 (7%)
Query: 55 LKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQT 114
L++ P P + + P G+ I E ARLLF V W R + F
Sbjct: 173 LRAEPYPGSRYGHQYSQQSGPDNSMGIDNIC-------ELAARLLFSIVEWARNIPYFPE 225
Query: 115 LSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK------ARERLPPDDVRVNNE 168
L DQ+ LL+ SW ELF+L+ AQ ++P ++ L+ + ER+ V ++
Sbjct: 226 LPVSDQVALLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERV----VSFMDQ 281
Query: 169 IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRG 228
+++ Q+ + + +L D +E C+KA+ LF+P+ GL D VE LQ++AQ L +Y R
Sbjct: 282 VRVFQDQVDKLTRLQVDSAEYSCLKAIALFSPDACGLTDPVHVESLQEKAQVALTEYERM 341
Query: 229 RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
+Y QP RFGRLLL LP+LRAV S I +LFF +G PI+ L+ DM S P
Sbjct: 342 QYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDMQLSGSSISWP 399
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 49/76 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 314 DACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 373
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 374 MRLVGKTPIETLIRDM 389
>gi|314955556|gb|ADT64885.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 2/195 (1%)
Query: 83 QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIP 142
I +A CQ T +L F V W + + F +L DQ+LLL+ W EL + + S+
Sbjct: 203 NICQAANICQATNKQL-FQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSME 261
Query: 143 WDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPE 201
+++ R V +++ E++A+ R++ D +E GC+++VILF P+
Sbjct: 262 VKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPD 321
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 261
GL Q VEML+++ L +Y R + +P RF +LLL LP+LR++ +E LFF
Sbjct: 322 VRGLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFF 381
Query: 262 ETIGDIPIQRLLGDM 276
IGD PI L +M
Sbjct: 382 RLIGDAPIDTFLMEM 396
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL Q VEML+++ L +Y R + +P RF +LLL LP+LR++ +E LFF
Sbjct: 324 GLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRL 383
Query: 347 IGDIPIQRLLGDM 359
IGD PI L +M
Sbjct: 384 IGDAPIDTFLMEM 396
>gi|113197752|gb|AAI21596.1| LOC779621 protein [Xenopus (Silurana) tropicalis]
Length = 452
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L DQ++LL+ W EL + + S+ +L+ R
Sbjct: 266 LFTLVEWAKRIPHFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 325
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
+ V + +++ E++++ + + D SE GC++A++LF P+ GL +A VE L+++
Sbjct: 326 SAHNAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREK 385
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 386 VYATLESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 444
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL +A VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 369 DAKGLSNAAEVEALREKVYATLESYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 428
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 429 FKLIGDTPIDTFLMEM 444
>gi|348501001|ref|XP_003438059.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 410
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 115/207 (55%), Gaps = 10/207 (4%)
Query: 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDL 145
M + E ARLLF V W R + F L DQ+ LL+ SW ELF+L AQ ++P +
Sbjct: 198 MGIDNICELAARLLFSTVEWARNIPYFPELPVSDQVALLRLSWSELFILSAAQSALPLHM 257
Query: 146 SLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFT 199
+ L+ + ER+ V +++++ Q+ + + +L D +E C+KA+ LF+
Sbjct: 258 APLLAAAGFHSSPMSAERV----VSFMDQVRVFQDQVDKLTRLQVDSAEYSCLKAIALFS 313
Query: 200 PETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
P+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV S I +LF
Sbjct: 314 PDACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLF 373
Query: 260 FKETIGDIPIQRLLGDMYTMEKSYETP 286
F IG PI+ L+ DM S P
Sbjct: 374 FMRLIGKTPIETLIRDMQLSGNSISWP 400
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 49/76 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 315 DACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 374
Query: 344 KETIGDIPIQRLLGDM 359
IG PI+ L+ DM
Sbjct: 375 MRLIGKTPIETLIRDM 390
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L DQ++LL+ W EL + + S+ +L+ R
Sbjct: 284 LFTLVEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 343
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
+ V + +++ E++++ + + D SE GC++A++LF P+ GL +A VE L+++
Sbjct: 344 SAHNAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREK 403
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 404 VYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 462
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL +A VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 387 DAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 446
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 447 FKLIGDTPIDTFLMEM 462
>gi|302202572|gb|ADL09403.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 2/195 (1%)
Query: 83 QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIP 142
I +A CQ T +L F V W + + F +L DQ+LLL+ W EL + + S+
Sbjct: 203 NICQAANICQATNKQL-FQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSME 261
Query: 143 WDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPE 201
+++ R V +++ E++A+ R++ D +E GC+++VILF P+
Sbjct: 262 VKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPD 321
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 261
GL Q VEML+++ L +Y R + +P RF +LLL LP+LR++ +E LFF
Sbjct: 322 VRGLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFF 381
Query: 262 ETIGDIPIQRLLGDM 276
IGD PI L +M
Sbjct: 382 RLIGDAPIDTFLMEM 396
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL Q VEML+++ L +Y R + +P RF +LLL LP+LR++ +E LFF
Sbjct: 324 GLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRL 383
Query: 347 IGDIPIQRLLGDM 359
IGD PI L +M
Sbjct: 384 IGDAPIDTFLMEM 396
>gi|322792862|gb|EFZ16695.1| hypothetical protein SINV_10759 [Solenopsis invicta]
Length = 397
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 112/192 (58%), Gaps = 11/192 (5%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L+ E E A+LLF AVRW R + F L RDQ +LL+ESW ELF+L AQW+ P D
Sbjct: 210 LLPTENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVD 269
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
+ L+ + ER +V ++ +L +E+LA+ L D SE C+KA++LF E+
Sbjct: 270 ETTLVPVDLPIER---REVLLDKARRL-RELLAKCAALRVDHSEYACLKAIVLFKAESRN 325
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + V LQ+Q + + R R GRLLL+LP RA+ ++T+ L FK T+
Sbjct: 326 LCEPGRVSALQEQTVAVFCE-------RDARRVGRLLLLLPPARALCRTTLHELLFKPTV 378
Query: 265 GDIPIQRLLGDM 276
G++ ++RLLGDM
Sbjct: 379 GEVSVERLLGDM 390
>gi|327265992|ref|XP_003217791.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Anolis carolinensis]
Length = 629
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 421 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 480
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KAV+LF+ + PG
Sbjct: 481 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMTKLDIDGYEYAYLKAVVLFSSDHPG 540
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L ++ +E Q++AQ L DYV+ Y R R+L+ LP+LR + S E LFF I
Sbjct: 541 LTNSNQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTGLI 600
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++PI ++ + ME +
Sbjct: 601 GNVPIDSIIPYILKMETA 618
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL ++ +E Q++AQ L DYV+ Y R R+L+ LP+LR + S E L
Sbjct: 535 SSDHPGLTNSNQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEEL 594
Query: 342 FFKETIGDIPIQRLLGDMYTMEKS 365
FF IG++PI ++ + ME +
Sbjct: 595 FFTGLIGNVPIDSIIPYILKMETA 618
>gi|417411925|gb|JAA52381.1| Putative nuclear receptor subfamily protein 2 group c member 2,
partial [Desmodus rotundus]
Length = 610
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 402 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 461
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 462 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 521
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 522 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 581
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 582 GNVSIDSIIPYILKMETA 599
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 520 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 579
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 580 LIGNVSIDSIIPYILKMETA 599
>gi|60360544|dbj|BAD90516.1| mKIAA4145 protein [Mus musculus]
Length = 363
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 12/216 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E+ +RLLF+++ W R + FQ L + L++ W ELF L
Sbjct: 141 PSPMPEYLNV----HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTL 196
Query: 135 HLAQWSIPWDLSLLINC-------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDG 186
LAQ + LS ++ ++L D ++ V I +QE +L DG
Sbjct: 197 GLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDG 256
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+ PGL +E Q++AQ L DYV+ YS R R+L+ LP+
Sbjct: 257 YEYAYLKAIVLFSPDHPGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPA 316
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
LR + + E LFF IG++ I ++ + ME +
Sbjct: 317 LRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETA 352
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 273 PGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 332
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 333 LIGNVSIDSIIPYILKMETA 352
>gi|397511829|ref|XP_003826267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Pan paniscus]
Length = 648
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 440 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 499
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 500 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 559
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 560 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 619
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 620 GNVSIDSIIPYILKMETA 637
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 558 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 617
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 618 LIGNVSIDSIIPYILKMETA 637
>gi|36950991|ref|NP_003289.2| nuclear receptor subfamily 2 group C member 2 [Homo sapiens]
gi|296225932|ref|XP_002758706.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Callithrix jacchus]
gi|119584617|gb|EAW64213.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|119584618|gb|EAW64214.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|168278006|dbj|BAG10981.1| orphan nuclear receptor TR4 [synthetic construct]
gi|325588346|gb|ADZ31973.1| testicular nuclear receptor 4 [Homo sapiens]
gi|355564520|gb|EHH21020.1| hypothetical protein EGK_03993 [Macaca mulatta]
gi|380816092|gb|AFE79920.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
gi|383421225|gb|AFH33826.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
Length = 615
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 407 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 466
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 467 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 526
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 527 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 586
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 587 GNVSIDSIIPYILKMETA 604
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 525 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 584
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 585 LIGNVSIDSIIPYILKMETA 604
>gi|444705543|gb|ELW46965.1| Nuclear receptor subfamily 2 group C member 2 [Tupaia chinensis]
Length = 606
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 398 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 457
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 458 VNHLQNSMQEDKLSGDRIKQVMEHIWKLQEFCNSMARLDVDGYEYAYLKAIVLFSPDHPG 517
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 518 LSSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 577
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 578 GNVSIDSIIPYILKMETA 595
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 516 PGLSSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 575
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 576 LIGNVSIDSIIPYILKMETA 595
>gi|75017953|sp|Q8T5C6.1|RXR_BIOGL RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like
protein; AltName: Full=Retinoid X receptor; Short=BgRXR
gi|19386469|gb|AAL86461.1| RXR-like protein [Biomphalaria glabrata]
Length = 436
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 243 CQ-AADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLA 301
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R + D +E GC++AV+LF P+ GL Q
Sbjct: 302 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTAVQ 361
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 362 EVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPI 421
Query: 270 QRLLGDM 276
L +M
Sbjct: 422 DTFLMEM 428
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 353 DAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFF 412
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 413 FKLIGDQPIDTFLMEM 428
>gi|402887043|ref|XP_003906915.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Papio anubis]
gi|403268297|ref|XP_003926214.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Saimiri boliviensis boliviensis]
Length = 648
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 440 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 499
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 500 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 559
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 560 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 619
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 620 GNVSIDSIIPYILKMETA 637
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 558 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 617
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 618 LIGNVSIDSIIPYILKMETA 637
>gi|350591455|ref|XP_003483272.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Sus scrofa]
Length = 609
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 401 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 460
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 461 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 520
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 521 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 580
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 581 GNVSIDSIIPYILKMETA 598
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 519 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 578
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 579 LIGNVSIDSIIPYILKMETA 598
>gi|441665232|ref|XP_003265071.2| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2 [Nomascus leucogenys]
Length = 648
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 440 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 499
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 500 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 559
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 560 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 619
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 620 GNVSIDSIIPYILKMETA 637
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 558 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 617
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 618 LIGNVSIDSIIPYILKMETA 637
>gi|149728243|ref|XP_001491080.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Equus caballus]
Length = 596
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|16797886|gb|AAL29201.1|AF323688_1 nuclear receptor AmNR8 [Acropora millepora]
Length = 379
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 11/203 (5%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E E RLLF+ V W R + F+TL DQL+LLQ SW +LF+L +AQ S + LS
Sbjct: 172 SMEYVYEIATRLLFLTVDWTRNIQAFRTLETSDQLVLLQSSWSDLFMLGVAQCSSSFPLS 231
Query: 147 LLINC-----------EKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAV 195
L+ E+ + D + +++ I+E+L +L D E +K++
Sbjct: 232 PLLTLAAVHMEHKEGNEEQKSNGIMQDSNLLDKMMSIKELLFSLERLEMDLVEFAFLKSI 291
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
+LF P+ L + Q VE LQ++A L YV R+ P RF ++LL LP+ R + +
Sbjct: 292 VLFNPDCSSLKNPQQVERLQEKAHRALKQYVENRHPNTPERFAKILLRLPATRMLTKRAA 351
Query: 256 ERLFFKETIGDIPIQRLLGDMYT 278
E LFF IG + I+ ++ + +
Sbjct: 352 EELFFSPLIGAVRIENIMNSIIS 374
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ L + Q VE LQ++A L YV R+ P RF ++LL LP+ R + + E LFF
Sbjct: 297 DCSSLKNPQQVERLQEKAHRALKQYVENRHPNTPERFAKILLRLPATRMLTKRAAEELFF 356
Query: 344 KETIGDIPIQRLLGDMYT 361
IG + I+ ++ + +
Sbjct: 357 SPLIGAVRIENIMNSIIS 374
>gi|149728246|ref|XP_001491100.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Equus caballus]
Length = 611
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 403 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 462
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 463 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 522
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 523 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 582
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 583 GNVSIDSIIPYILKMETA 600
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 521 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 580
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 581 LIGNVSIDSIIPYILKMETA 600
>gi|350591453|ref|XP_003132435.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Sus scrofa]
Length = 596
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|345786121|ref|XP_541755.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Canis
lupus familiaris]
Length = 596
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|301771740|ref|XP_002921290.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Ailuropoda melanoleuca]
Length = 611
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 403 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 462
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 463 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 522
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 523 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 582
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 583 GNVSIDSIIPYILKMETA 600
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 521 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 580
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 581 LIGNVSIDSIIPYILKMETA 600
>gi|216409724|dbj|BAH02299.1| nuclear receptor subfamily 2, group C, member 2 [Homo sapiens]
Length = 596
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|410951774|ref|XP_003982568.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Felis catus]
Length = 596
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|355707885|gb|AES03095.1| nuclear receptor subfamily 2, group C, member 2 [Mustela putorius
furo]
Length = 609
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 401 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 460
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 461 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 520
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 521 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 580
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 581 GNVSIDSIIPYILKMETA 598
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 519 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 578
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 579 LIGNVSIDSIIPYILKMETA 598
>gi|355786362|gb|EHH66545.1| hypothetical protein EGM_03558, partial [Macaca fascicularis]
Length = 572
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 364 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 423
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 424 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 483
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 484 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 543
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 544 GNVSIDSIIPYILKMETA 561
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 482 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 541
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 542 LIGNVSIDSIIPYILKMETA 561
>gi|344275981|ref|XP_003409789.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Loxodonta
africana]
Length = 616
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 408 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 467
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 468 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 527
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 528 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 587
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 588 GNVSIDSIIPYILKMETA 605
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 526 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 585
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 586 LIGNVSIDSIIPYILKMETA 605
>gi|432110921|gb|ELK34395.1| Nuclear receptor subfamily 2 group C member 2 [Myotis davidii]
Length = 596
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|114585547|ref|XP_001158643.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 6
[Pan troglodytes]
gi|410222744|gb|JAA08591.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410261218|gb|JAA18575.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410287872|gb|JAA22536.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410349801|gb|JAA41504.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
Length = 615
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 407 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 466
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 467 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 526
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 527 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 586
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 587 GNVSIDSIIPYILKMETA 604
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 525 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 584
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 585 LIGNVSIDSIIPYILKMETA 604
>gi|395847192|ref|XP_003796267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Otolemur garnettii]
gi|395847194|ref|XP_003796268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Otolemur garnettii]
Length = 596
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|297276426|ref|XP_001114305.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
isoform 1 [Macaca mulatta]
Length = 404
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 112/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 204 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 263
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFT + GL
Sbjct: 264 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTQDACGLS 319
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 320 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 379
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 380 TPIETLIRDMLLSGSTFNWP 399
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 314 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 373
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 374 MRLVGKTPIETLIRDM 389
>gi|148237103|ref|NP_001089591.1| uncharacterized protein LOC734648 [Xenopus laevis]
gi|68533768|gb|AAH99024.1| MGC115510 protein [Xenopus laevis]
Length = 471
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L DQ++LL+ W EL + + S+ +L+ R
Sbjct: 285 LFTLVEWAKRIPHFSDLLLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 344
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
+ V + +++ E++++ + + D SE GC++A++LF P+ GL +A VE L+++
Sbjct: 345 SAHNAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREK 404
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 405 VYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 463
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL +A VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 388 DAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 447
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 448 FKLIGDTPIDTFLMEM 463
>gi|281347589|gb|EFB23173.1| hypothetical protein PANDA_010183 [Ailuropoda melanoleuca]
Length = 572
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 364 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 423
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 424 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 483
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 484 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 543
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 544 GNVSIDSIIPYILKMETA 561
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 482 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 541
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 542 LIGNVSIDSIIPYILKMETA 561
>gi|114585553|ref|XP_001158452.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 3
[Pan troglodytes]
gi|296225930|ref|XP_002758705.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Callithrix jacchus]
gi|297670033|ref|XP_002813184.1| PREDICTED: uncharacterized protein LOC100448384 isoform 1 [Pongo
abelii]
gi|390475359|ref|XP_003734943.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Callithrix jacchus]
gi|397511831|ref|XP_003826268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Pan paniscus]
gi|402887045|ref|XP_003906916.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Papio anubis]
gi|403268295|ref|XP_003926213.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Saimiri boliviensis boliviensis]
gi|410036591|ref|XP_003950084.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Pan
troglodytes]
gi|1351190|sp|P49116.1|NR2C2_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|758382|gb|AAC50118.1| hTAK1 [Homo sapiens]
gi|119584619|gb|EAW64215.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_b
[Homo sapiens]
gi|158254612|dbj|BAF83279.1| unnamed protein product [Homo sapiens]
Length = 596
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|410951776|ref|XP_003982569.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Felis catus]
Length = 615
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 407 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 466
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 467 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 526
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 527 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 586
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 587 GNVSIDSIIPYILKMETA 604
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 525 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 584
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 585 LIGNVSIDSIIPYILKMETA 604
>gi|8394483|ref|NP_059019.1| nuclear receptor subfamily 2 group C member 2 [Rattus norvegicus]
gi|1730013|sp|P55094.1|NR2C2_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|538260|gb|AAA21475.1| TR4 orphan receptor [Rattus norvegicus]
Length = 596
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGHEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|431916906|gb|ELK16662.1| Nuclear receptor subfamily 2 group C member 2 [Pteropus alecto]
Length = 596
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|912822|gb|AAB33314.1| type II zinc finger DNA binding transcription factor [Mus sp.]
gi|148666900|gb|EDK99316.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a [Mus
musculus]
Length = 629
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 421 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 480
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 481 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 540
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 541 LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 600
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 601 GNVSIDSIIPYILKMETA 618
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 539 PGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 598
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 599 LIGNVSIDSIIPYILKMETA 618
>gi|149036768|gb|EDL91386.1| rCG56527, isoform CRA_a [Rattus norvegicus]
Length = 629
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 421 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 480
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 481 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 540
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 541 LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 600
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 601 GNVSIDSIIPYILKMETA 618
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 539 PGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 598
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 599 LIGNVSIDSIIPYILKMETA 618
>gi|149036770|gb|EDL91388.1| rCG56527, isoform CRA_c [Rattus norvegicus]
Length = 596
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L DQ++LL+ W EL + + S+ +L+ R
Sbjct: 284 LFTLVEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 343
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
+ V + +++ E++++ + + D SE GC++A++LF P+ GL +A VE L+++
Sbjct: 344 SAHNAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREK 403
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 404 VYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDIFLMEM 462
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL +A VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 387 DAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 446
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 447 FKLIGDTPIDIFLMEM 462
>gi|67906168|ref|NP_035760.1| nuclear receptor subfamily 2 group C member 2 [Mus musculus]
gi|1351191|sp|P49117.1|NR2C2_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|885593|gb|AAA93150.1| orphan receptor TAK1 [Mus musculus]
gi|73909027|gb|AAI03684.1| Nr2c2 protein [Mus musculus]
gi|73909185|gb|AAI03685.1| Nr2c2 protein [Mus musculus]
gi|74210203|dbj|BAE23331.1| unnamed protein product [Mus musculus]
Length = 596
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|363738759|ref|XP_414462.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Gallus
gallus]
Length = 629
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 421 ESASRLLFLSMHWARSIPAFQALGQECNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 480
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE ++ DG E +KA++LF+P+ PG
Sbjct: 481 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKIDIDGYEYAYLKAIVLFSPDHPG 540
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + +E Q++AQ L DYV+ Y R R+L+ LP+LR + S E LFF I
Sbjct: 541 LNSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTGLI 600
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++PI ++ + ME +
Sbjct: 601 GNVPIDSIIPYILKMETA 618
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL + +E Q++AQ L DYV+ Y R R+L+ LP+LR + S E LFF
Sbjct: 539 PGLNSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTG 598
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++PI ++ + ME +
Sbjct: 599 LIGNVPIDSIIPYILKMETA 618
>gi|348515163|ref|XP_003445109.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 407
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 127/243 (52%), Gaps = 22/243 (9%)
Query: 50 YPPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCL 109
YPPS +P + S A+ +M + E ARLLF + W R +
Sbjct: 176 YPPSRYGAPYGQAQMQASASGAS------------VMGIDSICELAARLLFSTIEWARNI 223
Query: 110 APFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK------ARERLPPDDV 163
F L +Q+ LL+ SW ELF+L+ AQ ++P ++ L+ + ER+ V
Sbjct: 224 PYFPELPVSEQVALLRLSWSELFILNAAQSALPLHMAPLLAAAGFHSSPMSAERV----V 279
Query: 164 RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILG 223
+++++ Q+ + + +L D +E C+KA+ LF+P+ GL D VE LQ++AQ L
Sbjct: 280 SFMDQVRVFQDQVEKLNRLQVDSAEYSCLKAIALFSPDACGLTDPAHVESLQEKAQVALT 339
Query: 224 DYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSY 283
+Y R +Y QP RFGRLLL LP+LRAV + I +LFF +G PI+ L+ DM S
Sbjct: 340 EYERLQYPNQPQRFGRLLLRLPALRAVPANLISQLFFMRLVGKTPIETLIRDMQLSGSSI 399
Query: 284 ETP 286
P
Sbjct: 400 SWP 402
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV + I +LFF
Sbjct: 317 DACGLTDPAHVESLQEKAQVALTEYERLQYPNQPQRFGRLLLRLPALRAVPANLISQLFF 376
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 377 MRLVGKTPIETLIRDM 392
>gi|354465507|ref|XP_003495221.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Cricetulus griseus]
gi|344241619|gb|EGV97722.1| Nuclear receptor subfamily 2 group C member 2 [Cricetulus griseus]
Length = 596
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|390432213|gb|AFL91698.1| retinoid X receptor isoform c [Azumapecten farreri]
Length = 466
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W R + F L DQ++LL+ W EL + + SI +L+
Sbjct: 273 CQ-AADKQLFTLVAWARRIPHFTELPLEDQVILLRAGWNELLIAAFSHRSIVVKDGILLA 331
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ GL Q
Sbjct: 332 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLSAIQ 391
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 392 EVEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 451
Query: 270 QRLLGDM 276
L +M
Sbjct: 452 DTFLMEM 458
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 383 DAKGLSAIQEVEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 442
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 443 FKLIGDTPIDTFLMEM 458
>gi|21310111|gb|AAM46151.1|AF378829_1 nuclear hormone receptor RXR [Branchiostoma floridae]
Length = 522
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L+ + V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 298 CQAADKQLVTL-VEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGILLA 356
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R + D +E GC++A++LF P+ GL D
Sbjct: 357 SGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPS 416
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 417 LVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 476
Query: 270 QRLLGDMYTMEKSYETPGL 288
L +M E PGL
Sbjct: 477 DTFLMEM------LEAPGL 489
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE L+++ L +Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 408 DAKGLTDPSLVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 467
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 468 FKLIGDTPIDTFLMEM 483
>gi|314955738|gb|ADT64886.1| retinoid X receptor [Gryllus firmus]
Length = 358
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 2/195 (1%)
Query: 83 QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIP 142
I +A CQ T +L F V W + + F +L DQ+LLL+ W EL + + S+
Sbjct: 158 NICQAANICQATNKQL-FQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSME 216
Query: 143 WDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPE 201
+++ R V +++ E++A+ R++ D +E GC+++VILF P+
Sbjct: 217 VKDGIVLATGLTIHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPD 276
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 261
GL Q VEML+++ L +Y R + +P RF +LLL LP+LR++ +E LFF
Sbjct: 277 VRGLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFF 336
Query: 262 ETIGDIPIQRLLGDM 276
IGD PI L +M
Sbjct: 337 RLIGDAPIDTFLMEM 351
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL Q VEML+++ L +Y R + +P RF +LLL LP+LR++ +E LFF
Sbjct: 279 GLKSQQEVEMLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFRL 338
Query: 347 IGDIPIQRLLGDM 359
IGD PI L +M
Sbjct: 339 IGDAPIDTFLMEM 351
>gi|302563813|ref|NP_001181753.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 377
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 112/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 177 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 236
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFT + GL
Sbjct: 237 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTQDACGLS 292
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 293 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 352
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 353 TPIETLIRDMLLSGSTFNWP 372
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 287 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 346
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 347 MRLVGKTPIETLIRDM 362
>gi|405966658|gb|EKC31918.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 707
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + ET +RLLF+++ W R + F LS+ Q +L++ SW ELF L
Sbjct: 441 PSPMPAYLNV----HYICETASRLLFLSMHWTRSIPAFHVLSQEVQTILVKSSWSELFTL 496
Query: 135 HLAQWSIPWDLS-----LLINCEKARERLPPDDVRVN---NEIKLIQEILARFRQLSPDG 186
LAQ + LS +L + + A ++ RV + I +Q + L D
Sbjct: 497 GLAQCAQSMSLSTILMAILNHLQTALQQDKNSAERVKLVIDHILKLQNYIQSLEALQIDS 556
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+TP L +A +E +QD+AQ L ++VR + P R +LLL LP+
Sbjct: 557 EEFAYLKALVLFSPDTPSLPNAPQIERVQDRAQRELANHVRQTHPSNPDRLAKLLLRLPA 616
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
L ++ S +E LFF IG + I ++ + ME +
Sbjct: 617 LHSLSPSVMEELFFAGLIGSVQIDSIIPYILRMETA 652
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+TP L +A +E +QD+AQ L ++VR + P R +LLL LP+L ++ S +E LFF
Sbjct: 571 DTPSLPNAPQIERVQDRAQRELANHVRQTHPSNPDRLAKLLLRLPALHSLSPSVMEELFF 630
Query: 344 KETIGDIPIQRLLGDMYTMEKS 365
IG + I ++ + ME +
Sbjct: 631 AGLIGSVQIDSIIPYILRMETA 652
>gi|326928210|ref|XP_003210274.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Meleagris gallopavo]
Length = 592
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 384 ESASRLLFLSMHWARSIPAFQALGQECNTGLVRACWNELFTLGLAQCAQVMSLSTILAAI 443
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE ++ DG E +KA++LF+P+ PG
Sbjct: 444 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKIDIDGYEYAYLKAIVLFSPDHPG 503
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + +E Q++AQ L DYV+ Y R R+L+ LP+LR + S E LFF I
Sbjct: 504 LNSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTGLI 563
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++PI ++ + ME +
Sbjct: 564 GNVPIDSIIPYILKMETA 581
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL + +E Q++AQ L DYV+ Y R R+L+ LP+LR + S E LFF
Sbjct: 502 PGLNSSTQIEKFQEKAQMELQDYVQKTYPEDTYRLARILVRLPALRLMSSSITEELFFTG 561
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++PI ++ + ME +
Sbjct: 562 LIGNVPIDSIIPYILKMETA 581
>gi|390432215|gb|AFL91699.1| retinoid X receptor isoform d [Azumapecten farreri]
Length = 470
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W R + F L DQ++LL+ W EL + + SI +L+
Sbjct: 277 CQ-AADKQLFTLVAWARRIPHFTELPLEDQVILLRAGWNELLIAAFSHRSIVVKDGILLA 335
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ GL Q
Sbjct: 336 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLSAIQ 395
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 396 EVEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 455
Query: 270 QRLLGDM 276
L +M
Sbjct: 456 DTFLMEM 462
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 387 DAKGLSAIQEVEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 446
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 447 FKLIGDTPIDTFLMEM 462
>gi|348533848|ref|XP_003454416.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Oreochromis niloticus]
Length = 412
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 8/200 (4%)
Query: 77 PHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHL 136
PH + I +A+K LF V W + + F L DQ++LL+ W EL +
Sbjct: 213 PHDAVSNICQTADK-------QLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 265
Query: 137 AQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVI 196
+ SIP +L+ E R+ V + +++ E++ + R + D E GC++A++
Sbjct: 266 SHRSIPLKDGVLLASELQRDSAHSAGVGAIFD-RVLTELVNKMRDMQMDKIELGCLRAIV 324
Query: 197 LFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIE 256
LF P+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E
Sbjct: 325 LFNPDAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLE 384
Query: 257 RLFFKETIGDIPIQRLLGDM 276
LFF + IGD PI L +M
Sbjct: 385 HLFFFKLIGDTPIDTFLMEM 404
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 329 DAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 388
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 389 FKLIGDTPIDTFLMEM 404
>gi|390432211|gb|AFL91697.1| retinoid X receptor isoform b [Azumapecten farreri]
Length = 450
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W R + F L DQ++LL+ W EL + + SI +L+
Sbjct: 257 CQ-AADKQLFTLVAWARRIPHFTELPLEDQVILLRAGWNELLIAAFSHRSIVVKDGILLA 315
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ GL Q
Sbjct: 316 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLSAIQ 375
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 376 EVEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 435
Query: 270 QRLLGDM 276
L +M
Sbjct: 436 DTFLMEM 442
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 367 DAKGLSAIQEVEALREKVYASLEEYSKTRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 426
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 427 FKLIGDTPIDTFLMEM 442
>gi|380021453|ref|XP_003694579.1| PREDICTED: protein tailless-like [Apis florea]
Length = 400
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 144/321 (44%), Gaps = 70/321 (21%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPP 60
VQHERGPR + + L P +++PP P L L P P
Sbjct: 103 VQHERGPRNSTLR----RQMALYFKEPEMMANMVPP--------PAAAL----DLALPKP 146
Query: 61 PSHHHPSMF----------------LATHQPP------PHPGLLQILMSAEKCQETTARL 98
P+ S+ +A + P P L+ ++AE E ARL
Sbjct: 147 PNEPRVSVPAPAPHHPLPHPVYCNNMAMSKIPVSVAGLPTLPLIPAAITAESICEQAARL 206
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF+ V W R LA L DQL LL+ SW+ELFLL AQ D + L L
Sbjct: 207 LFLNVHWARDLAIGTNLVIEDQLTLLESSWRELFLLAAAQILPSLDPTPL---------L 257
Query: 159 PPD--DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF------------------ 198
PP + + E+ +E LA F +S D E C++A++LF
Sbjct: 258 PPGPQGLGLAVEVTRFRETLAGFHAMSLDQHEYACIRAIVLFKAGLDSEPLPSSRSSNGS 317
Query: 199 -TPETPG-LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIE 256
+P T L DA V L+D AQ LG + G S RFG+LLL+LPSLR+V IE
Sbjct: 318 TSPNTGSRLRDAAAVARLRDGAQLALGQRLSG-ASFGALRFGKLLLLLPSLRSVSAHAIE 376
Query: 257 RLFFKETIGDIPIQRLLGDMY 277
LFF+ TIG IPI+R++ DMY
Sbjct: 377 ELFFRRTIGVIPIERIICDMY 397
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 288 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 347
L DA V L+D AQ LG + G S RFG+LLL+LPSLR+V IE LFF+ TI
Sbjct: 326 LRDAAAVARLRDGAQLALGQRLSG-ASFGALRFGKLLLLLPSLRSVSAHAIEELFFRRTI 384
Query: 348 GDIPIQRLLGDMY 360
G IPI+R++ DMY
Sbjct: 385 GVIPIERIICDMY 397
>gi|270002751|gb|EEZ99198.1| tailless [Tribolium castaneum]
Length = 406
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 150/300 (50%), Gaps = 36/300 (12%)
Query: 1 VQHERGPRKPKIH----NAHHQDSKLEPHNPHHSPDLLPPNGISSVKIP-----PTVLYP 51
VQHERGPR + ++++ +S++ + PP + ++ +P P+++ P
Sbjct: 110 VQHERGPRNSTLRRQQMSSYYNESRVM---------MSPPGNVLNLTMPKYEPNPSIIDP 160
Query: 52 PSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQI---LMSAEKCQETTARLLFMAVRWVRC 108
L PP+ + +L Q PP P +++ E+ A+LLFM V+WVR
Sbjct: 161 GPAL----PPTGFLCNNYLPLPQVPPLPLPPMFAPTMINPSAICESAAQLLFMNVQWVRS 216
Query: 109 LAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNE 168
+ F L DQLLLL+ESW +LF+L AQ+ D S+L+ ++ P E
Sbjct: 217 IPAFTCLPLSDQLLLLEESWLDLFVLGAAQFLPLMDFSVLVEACGVLQQEPHRRDAFLKE 276
Query: 169 IKLIQEILARFRQLSPDGSECGCMKAVILF----------TPETPGLVDAQPVEMLQDQA 218
+ QE L + Q D E C++A++LF + + ++ + ++QD A
Sbjct: 277 VADFQETLKKISQFQLDAHEFACLRAIVLFKTSFEKPSSSSNQEKTTTESAKISVIQDDA 336
Query: 219 QCILGDYVRGRYSRQPTRFGRLLLMLPS-LRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
Q L +V Y +QP RFG++LL++ S R + TIE LFFK+ I D PI ++ +MY
Sbjct: 337 QMRLNKHVTTTYPKQPLRFGKILLLVSSTFRTISGRTIEDLFFKKVIRDTPIVAIISNMY 396
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS-LRAVRQSTIER 340
S + ++ + ++QD AQ L +V Y +QP RFG++LL++ S R + TIE
Sbjct: 317 SNQEKTTTESAKISVIQDDAQMRLNKHVTTTYPKQPLRFGKILLLVSSTFRTISGRTIED 376
Query: 341 LFFKETIGDIPIQRLLGDMY 360
LFFK+ I D PI ++ +MY
Sbjct: 377 LFFKKVIRDTPIVAIISNMY 396
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|291393486|ref|XP_002713082.1| PREDICTED: nuclear receptor subfamily 2, group C, member 2
[Oryctolagus cuniculus]
Length = 596
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LSGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSANITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLSGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSANITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|354486852|ref|XP_003505591.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-gamma-like [Cricetulus griseus]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDSFLMEM 455
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDSFLMEM 455
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|78100924|pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
gi|78100925|pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 37 CQAADKQL-FTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLA 95
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R + D +E GC++AV+LF P+ GL Q
Sbjct: 96 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTAVQ 155
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 156 EVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPI 215
Query: 270 QRLLGDM 276
L +M
Sbjct: 216 DTFLMEM 222
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 147 DAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFF 206
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 207 FKLIGDQPIDTFLMEM 222
>gi|86515358|ref|NP_001034502.1| tailless [Tribolium castaneum]
gi|8096685|gb|AAF71999.1|AF219117_1 tailless ortholog [Tribolium castaneum]
Length = 406
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 148/297 (49%), Gaps = 30/297 (10%)
Query: 1 VQHERGPRKPKIH----NAHHQDSKLEPHNPHHSPDLLPPNGISSVKIP-----PTVLYP 51
VQHERGPR + ++++ +S++ + PP + ++ +P P+++ P
Sbjct: 110 VQHERGPRNSTLRRQQMSSYYNESRVM---------MSPPGNVLNLTMPKYEPNPSIIDP 160
Query: 52 PSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAP 111
L +++P + P P ++ + C E+ A+L+FM V+WVR +
Sbjct: 161 GPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINPSAIC-ESAAQLIFMNVQWVRSIPA 219
Query: 112 FQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKL 171
F L DQLLLL+ESW +LF+L AQ+ D S+L+ ++ P E+
Sbjct: 220 FTCLPLSDQLLLLEESWLDLFVLGAAQFLPLMDFSVLVEACGVLQQEPHRRDAFLKEVAD 279
Query: 172 IQEILARFRQLSPDGSECGCMKAVILF----------TPETPGLVDAQPVEMLQDQAQCI 221
QE L + Q D E C++A++LF + + ++ + ++QD AQ
Sbjct: 280 FQETLKKISQFQLDAHEFACLRAIVLFKTSFEKPSSSSNQEKTTTESAKISVIQDDAQMR 339
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPS-LRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
L +V Y +QP RFG++LL++ S R + TIE LFFK+ I D PI ++ +MY
Sbjct: 340 LNKHVTTTYPKQPLRFGKILLLVSSTFRTISGRTIEDLFFKKVIRDTPIVAIISNMY 396
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS-LRAVRQSTIER 340
S + ++ + ++QD AQ L +V Y +QP RFG++LL++ S R + TIE
Sbjct: 317 SNQEKTTTESAKISVIQDDAQMRLNKHVTTTYPKQPLRFGKILLLVSSTFRTISGRTIED 376
Query: 341 LFFKETIGDIPIQRLLGDMY 360
LFFK+ I D PI ++ +MY
Sbjct: 377 LFFKKVIRDTPIVAIISNMY 396
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|74178793|dbj|BAE34041.1| unnamed protein product [Mus musculus]
Length = 596
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R L+ LP+LR + + E LFF I
Sbjct: 508 LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARTLVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R L+ LP+LR + + E LFF
Sbjct: 506 PGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARTLVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|189066517|dbj|BAG35767.1| unnamed protein product [Homo sapiens]
Length = 463
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|344236823|gb|EGV92926.1| Retinoic acid receptor RXR-gamma [Cricetulus griseus]
Length = 414
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 228 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 287
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 288 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 347
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 348 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 406
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 331 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 390
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 391 FKLIGDTPIDTFLMEM 406
>gi|395825135|ref|XP_003785797.1| PREDICTED: retinoic acid receptor RXR-gamma [Otolemur garnettii]
Length = 463
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 265 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 324
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 325 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 384
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 385 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 443
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 368 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 428 FKLIGDTPIDTFLMEM 443
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 112/220 (50%), Gaps = 13/220 (5%)
Query: 58 PPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSK 117
P S+ + +M +T+ P + I +A+K LF V W + + F L+
Sbjct: 255 PKTESYGNTNMENSTNDP-----VTNICHAADK-------QLFTLVEWAKRIPHFSDLTL 302
Query: 118 RDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEIL 176
DQ++LL+ W EL + + S+ +L+ R V + +++ E++
Sbjct: 303 EDQVILLRAGWNELLIASFSHRSVTVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELV 362
Query: 177 ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
++ + + D SE GC++A++LF P+ GL + VE L+++ L Y + +Y QP R
Sbjct: 363 SKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVEALREKVYATLEAYTKQKYPDQPGR 422
Query: 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
F +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 423 FAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 462
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 387 DAKGLSNPSEVEALREKVYATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 446
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 447 FKLIGDTPIDTFLMEM 462
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 261 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 320
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 321 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 380
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 381 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 439
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 364 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 423
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 424 FKLIGDTPIDTFLMEM 439
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 261 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 320
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 321 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 380
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 381 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 439
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 364 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 423
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 424 FKLIGDTPIDTFLMEM 439
>gi|410929439|ref|XP_003978107.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 406
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 117/208 (56%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF + W R + F L +Q+ LL+ SW ELF+L+ AQ S+P
Sbjct: 198 VMGIDSICELAARLLFSTIEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSSLPVH 257
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
++ L+ + ER+ V +++++ Q+ + + +L D +E C+KA+ LF
Sbjct: 258 MAPLLAAAGFHSSPMSAERV----VSFMDQVRVFQDQVDKLNRLQVDTAEYSCLKAIALF 313
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
+P+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV + I +L
Sbjct: 314 SPDACGLTDPAHVESLQEKAQVALTEYERIQYPSQPQRFGRLLLRLPALRAVPANLISQL 373
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ L+ DM S P
Sbjct: 374 FFMRLVGKTPIETLIRDMQLSGSSISWP 401
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV + I +LFF
Sbjct: 316 DACGLTDPAHVESLQEKAQVALTEYERIQYPSQPQRFGRLLLRLPALRAVPANLISQLFF 375
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 376 MRLVGKTPIETLIRDM 391
>gi|282165797|ref|NP_001107766.2| ultraspiracle nuclear receptor [Tribolium castaneum]
gi|270008201|gb|EFA04649.1| ultraspiracle, partial [Tribolium castaneum]
Length = 407
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 105/187 (56%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T + LF V+W + + F +L DQ+ LL+ W EL + + S+ ++++
Sbjct: 215 CQ-ATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLA 273
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ V V N +++ E++ + +++ D +E GC++A+IL+ P+ G+ Q
Sbjct: 274 TGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQ 333
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF + IGD+PI
Sbjct: 334 EVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPI 393
Query: 270 QRLLGDM 276
L +M
Sbjct: 394 DTFLMEM 400
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
G+ Q VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF +
Sbjct: 328 GIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 387
Query: 347 IGDIPIQRLLGDM 359
IGD+PI L +M
Sbjct: 388 IGDVPIDTFLMEM 400
>gi|121308144|emb|CAL25729.1| ultraspiracle nuclear receptor [Tribolium castaneum]
Length = 407
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 105/187 (56%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T + LF V+W + + F +L DQ+ LL+ W EL + + S+ ++++
Sbjct: 215 CQ-ATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLA 273
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ V V N +++ E++ + +++ D +E GC++A+IL+ P+ G+ Q
Sbjct: 274 TGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQ 333
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF + IGD+PI
Sbjct: 334 EVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPI 393
Query: 270 QRLLGDM 276
L +M
Sbjct: 394 DTFLMEM 400
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
G+ Q VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF +
Sbjct: 328 GIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 387
Query: 347 IGDIPIQRLLGDM 359
IGD+PI L +M
Sbjct: 388 IGDVPIDTFLMEM 400
>gi|348554859|ref|XP_003463242.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Cavia
porcellus]
Length = 596
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L + V+ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGERVKQVMEHIWKLQEFCNSMARLEIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|181330916|ref|NP_001116766.1| nuclear receptor subfamily 2 group C member 2 [Danio rerio]
Length = 623
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 106/199 (53%), Gaps = 9/199 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E+ +RLLF+++ W R + F L + L++ W ELF+L LAQ + LS ++
Sbjct: 414 ESASRLLFLSMHWARSIPAFLALGQECNTALVRACWNELFILGLAQCAQIMSLSTILTAI 473
Query: 153 KARERLPPDDV-RVNNE-IKLI-------QEILARFRQLSPDGSECGCMKAVILFTPETP 203
+ DV ++++E IKL+ QE +L D E +KA++LF+P+ P
Sbjct: 474 VNHLQSSIQDVDKLSSERIKLVMEHIWKLQEFCNSMAKLQTDAYEYAYLKAIVLFSPDHP 533
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 263
GL +E Q++AQ L DYV+ Y + R R+LL LP+LR + S E LFF
Sbjct: 534 GLSSCSQIEKFQEKAQMELQDYVQKTYPDETYRLARILLRLPALRLMSSSITEELFFTGL 593
Query: 264 IGDIPIQRLLGDMYTMEKS 282
IG++PI ++ + ME +
Sbjct: 594 IGNVPIDSIIPYILKMETA 612
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ Y + R R+LL LP+LR + S E LFF
Sbjct: 533 PGLSSCSQIEKFQEKAQMELQDYVQKTYPDETYRLARILLRLPALRLMSSSITEELFFTG 592
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++PI ++ + ME +
Sbjct: 593 LIGNVPIDSIIPYILKMETA 612
>gi|351695773|gb|EHA98691.1| Nuclear receptor subfamily 2 group C member 2 [Heterocephalus
glaber]
Length = 616
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 408 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 467
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L + V+ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 468 VNHLQNSIQEDKLSGERVKQVMEHIWKLQEFCNSMARLEIDGYEYAYLKAIVLFSPDHPG 527
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 528 LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 587
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 588 GNVSIDSIIPYILKMETA 605
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 526 PGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 585
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 586 LIGNVSIDSIIPYILKMETA 605
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + D SE GC++AV+LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDTQMDKSELGCLRAVVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 245 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 304
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 305 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 364
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 365 VYATLEXYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 423
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 348 DAKGLSNPSEVETLREKVYATLEXYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 407
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 408 FKLIGDTPIDTFLMEM 423
>gi|158302672|dbj|BAF85823.1| ultraspiracle [Liocheles australasiae]
Length = 410
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Query: 88 AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSL 147
A CQ +L + V W + + F L DQ++LL+ W EL + + SI +
Sbjct: 216 ANICQAADHQL-YQLVEWAKHVPHFTDLPLDDQMVLLKAGWNELLIAAFSHRSIDVKDGI 274
Query: 148 LINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
++ R V +++ E++A+ R+++ D +E GC++A++LF PE GL
Sbjct: 275 VLASGLIVHRNSAHGAGVGTIFDRVLTELVAKMREMNMDKTELGCLRAIVLFNPEAKGLK 334
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
VE L+++ L DY R Y QP RF +LLL LP+LR++ +E LFF + IGD
Sbjct: 335 SVTHVENLRERVYSALEDYCRQNYFDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 394
Query: 267 IPIQRLLGDM 276
PI L M
Sbjct: 395 TPIDNFLMSM 404
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL VE L+++ L DY R Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 329 EAKGLKSVTHVENLRERVYSALEDYCRQNYFDQPGRFAKLLLRLPALRSIGLKCLEHLFF 388
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+ IGD PI L M +E S G
Sbjct: 389 FKLIGDTPIDNFL--MSMLEASDG 410
>gi|390354650|ref|XP_784246.3| PREDICTED: retinoic acid receptor RXR [Strongylocentrotus
purpuratus]
Length = 479
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ+ LL+ W EL + + SI +L+
Sbjct: 287 CQ-AADKQLFTLVEWAKRIPHFTELPLDDQVTLLRAGWNELLIAAFSHRSIQVKDGILLA 345
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ L Q
Sbjct: 346 TGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNLTSVQ 405
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y R +Y+ +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 406 KVEELREKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 465
Query: 270 QRLLGDM 276
L +M
Sbjct: 466 DTFLMEM 472
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ L Q VE L+++ L +Y R +Y+ +P RF +LLL LP+LR++ +E LFF
Sbjct: 397 DAKNLTSVQKVEELREKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLEHLFF 456
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 457 FKLIGDTPIDTFLMEM 472
>gi|152149581|pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149582|pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149583|pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149584|pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 55 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 114
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 115 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 174
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 175 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 233
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 158 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 217
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 218 FKLIGDTPIDTFLMEM 233
>gi|47086055|ref|NP_998404.1| nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
gi|40807068|gb|AAH65332.1| Nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
Length = 404
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 114/209 (54%), Gaps = 2/209 (0%)
Query: 80 GLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW 139
G +M + E ARLLF + W R + F L +Q+ LL+ SW ELF+L+ AQ
Sbjct: 191 GANSSMMGIDNICELAARLLFSTIEWARNIPYFPDLPVSEQVALLRLSWSELFILNAAQS 250
Query: 140 SIPWDLSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVIL 197
++P + L+ P D V +++++ Q+ + + +L D E C+KA+ L
Sbjct: 251 ALPLHTAPLLAAAGFHSSPMPADRVVSFMDQVRVFQDQVDKLTRLQVDSVEYSCLKAIAL 310
Query: 198 FTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
F+P+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV + I +
Sbjct: 311 FSPDACGLSDPAHVESLQEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPANLISQ 370
Query: 258 LFFKETIGDIPIQRLLGDMYTMEKSYETP 286
LFF +G PI+ L+ DM S P
Sbjct: 371 LFFMRLVGKTPIETLIRDMQLSGSSISWP 399
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV + I +LFF
Sbjct: 314 DACGLSDPAHVESLQEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPANLISQLFF 373
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 374 MRLVGKTPIETLIRDM 389
>gi|343113489|gb|AEL87703.1| retinoid X receptor alpha [Strongylocentrotus nudus]
Length = 481
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ+ LL+ W EL + + SI +L+
Sbjct: 289 CQ-AADKQLFTLVEWAKRIPHFTELPLDDQVTLLRAGWNELLIAAFSHRSIQVKDGILLA 347
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ L Q
Sbjct: 348 TGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNLTSVQ 407
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y R +Y+ +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 408 KVEELREKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 467
Query: 270 QRLLGDM 276
L +M
Sbjct: 468 DTFLMEM 474
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ L Q VE L+++ L +Y R +Y+ +P RF +LLL LP+LR++ +E LFF
Sbjct: 399 DAKNLTSVQKVEELREKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLEHLFF 458
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 459 FKLIGDTPIDTFLMEM 474
>gi|260828819|ref|XP_002609360.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
gi|229294716|gb|EEN65370.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
Length = 427
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L+ + V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 238 CQAADKQLVTL-VEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGILLA 296
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R + D +E GC++A++LF P+ GL D
Sbjct: 297 SGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPS 356
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 357 LVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 416
Query: 270 QRLLGDM 276
L +M
Sbjct: 417 DTFLMEM 423
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE L+++ L +Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 348 DAKGLTDPSLVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 407
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 408 FKLIGDTPIDTFLMEM 423
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 239 LFTLVEWAKRIPHFSGLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 298
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 299 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 358
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 359 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 417
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 342 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 401
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 402 FKLIGDTPIDTFLMEM 417
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 281 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 340
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL VE L+++
Sbjct: 341 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREK 400
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 401 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 282 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 341
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL VE L+++
Sbjct: 342 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREK 401
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 402 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 460
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 385 DAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 444
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 445 FKLIGDTPIDTFLMEM 460
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 282 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 341
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL VE L+++
Sbjct: 342 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREK 401
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 402 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 460
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 385 DAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 444
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 445 FKLIGDTPIDTFLMEM 460
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D +E GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKAELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 303 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 362
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 363 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVEALREK 422
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 423 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 481
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 406 DAKGLSNPSEVEALREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 465
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 466 FKLIGDTPIDTFLMEM 481
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSRGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDSFLMEM 455
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDSFLMEM 455
>gi|410903442|ref|XP_003965202.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Takifugu
rubripes]
Length = 447
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L+ DQ++LL+ W EL + + SI +L+
Sbjct: 254 CQ-AADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSIGIKDGILLA 312
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 313 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPS 372
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 373 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 432
Query: 270 QRLLGDM 276
L +M
Sbjct: 433 DTFLMEM 439
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 364 DSKGLSNPSEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 423
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 424 FKLIGDTPIDTFLMEM 439
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 299 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 357
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D SE GC++A++LF P++ GL +
Sbjct: 358 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIVLFNPDSKGLSNPA 417
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 418 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 477
Query: 270 QRLLGDM 276
L +M
Sbjct: 478 DTFLMEM 484
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 409 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 468
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 469 FKLIGDTPIDTFLMEM 484
>gi|20302776|gb|AAM18897.1|AF391295_6 unknown [Branchiostoma floridae]
Length = 232
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 103/199 (51%), Gaps = 8/199 (4%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L+ + V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 8 CQAADKQLVTL-VEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGILLA 66
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R + D +E GC++A++LF P+ GL D
Sbjct: 67 SGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPS 126
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 127 LVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 186
Query: 270 QRLLGDMYTMEKSYETPGL 288
L +M E PGL
Sbjct: 187 DTFLMEM------LEAPGL 199
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE L+++ L +Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 118 DAKGLTDPSLVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 177
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 178 FKLIGDTPIDTFLMEM 193
>gi|158429174|pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429176|pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429178|pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429180|pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 105/187 (56%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T + LF V+W + + F +L DQ+ LL+ W EL + + S+ ++++
Sbjct: 43 CQ-ATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLA 101
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ V V N +++ E++ + +++ D +E GC++A+IL+ P+ G+ Q
Sbjct: 102 TGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQ 161
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF + IGD+PI
Sbjct: 162 EVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPI 221
Query: 270 QRLLGDM 276
L +M
Sbjct: 222 DTFLMEM 228
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
G+ Q VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF +
Sbjct: 156 GIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 215
Query: 347 IGDIPIQRLLGDM 359
IGD+PI L +M
Sbjct: 216 IGDVPIDTFLMEM 228
>gi|1144348|gb|AAC18408.1| TR4, partial [Mus musculus]
Length = 608
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 400 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 459
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE DG E +KA++LF+P+ PG
Sbjct: 460 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMANWDIDGYEYAYLKAIVLFSPDHPG 519
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 520 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 579
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 580 GNVSIDSIIPYILKMETA 597
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 518 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 577
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 578 LIGNVSIDSIIPYILKMETA 597
>gi|170587670|ref|XP_001898597.1| Steroid receptor seven-up type 2 [Brugia malayi]
gi|158593867|gb|EDP32461.1| Steroid receptor seven-up type 2, putative [Brugia malayi]
Length = 530
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 130/250 (52%), Gaps = 9/250 (3%)
Query: 34 LPPNGISSVKIPPTVLYPPSGLKSPPPPSHHHPSMFLATHQPPPHPGL----LQILMSAE 89
+PPN + TVL+ L H S+ P+P + + +
Sbjct: 263 IPPNAQHAYS--STVLFGEQLLTVNQSVGSHVSSIVTHLIHAEPYPPIACSSSSSSIGMD 320
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
E A+LLF AV W + + F LS DQL LL+ SW ELF+++ AQ+ +P ++ L+
Sbjct: 321 NIYEFGAKLLFSAVEWAKNIPFFNELSDTDQLTLLRASWAELFVINAAQFGMPVHVAPLL 380
Query: 150 NCEKARER--LPPDDVRV-NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
LP D + V + I++ Q + R + L D +E +KAVILF+ + GL
Sbjct: 381 AASGLHSSPPLPTDQLVVFMDRIRVFQGQIERLKALQMDLAEFCSLKAVILFSVDCCGLN 440
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE +Q++ Q L +Y R + Q RFGRLLL LPSLR++ S IE+LFF + +G+
Sbjct: 441 DVIRVETIQEKVQSALEEYCRTQKQLQVGRFGRLLLRLPSLRSISASVIEQLFFVKLVGE 500
Query: 267 IPIQRLLGDM 276
PI+ LL DM
Sbjct: 501 TPIEFLLRDM 510
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 13/136 (9%)
Query: 228 GRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK----SY 283
G +S P +L++ + +R V Q IERL +Q L + +++ S
Sbjct: 384 GLHSSPPLPTDQLVVFMDRIR-VFQGQIERL--------KALQMDLAEFCSLKAVILFSV 434
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE +Q++ Q L +Y R + Q RFGRLLL LPSLR++ S IE+LFF
Sbjct: 435 DCCGLNDVIRVETIQEKVQSALEEYCRTQKQLQVGRFGRLLLRLPSLRSISASVIEQLFF 494
Query: 344 KETIGDIPIQRLLGDM 359
+ +G+ PI+ LL DM
Sbjct: 495 VKLVGETPIEFLLRDM 510
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S+ +L+
Sbjct: 269 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLA 327
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++++ + + D +E GC++A++LF P+ GL + Q
Sbjct: 328 TGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPQ 387
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 388 EVEGLREKVYASLESYTKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 447
Query: 270 QRLLGDM 276
L +M
Sbjct: 448 DTFLMEM 454
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + Q VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 379 DAKGLSNPQEVEGLREKVYASLESYTKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 438
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 439 FKLIGDTPIDTFLMEM 454
>gi|262070641|gb|ACY08799.1| ultraspiracle, partial [Tribolium destructor]
Length = 283
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 104/180 (57%), Gaps = 2/180 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L F V+W + + F +L DQ+LLL+ W EL + + S+ ++++
Sbjct: 103 CQATNKQL-FQLVQWAKLIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSMQAQDAIVLA 161
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ + V V N +++ E++ + +++ D +E GC++A+IL+ P+ G+ Q
Sbjct: 162 TGLTVNKSTANAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQ 221
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF + IGD+PI
Sbjct: 222 EVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPI 281
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
G+ Q VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF +
Sbjct: 216 GIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 275
Query: 347 IGDIPI 352
IGD+PI
Sbjct: 276 IGDVPI 281
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 265 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 324
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL VE L+++
Sbjct: 325 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREK 384
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 385 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 443
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 368 DAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 428 FKLIGDTPIDTFLMEM 443
>gi|355717631|gb|AES06001.1| retinoid X receptor, gamma [Mustela putorius furo]
Length = 249
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 63 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 122
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 123 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 182
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 183 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 241
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 166 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 225
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 226 FKLIGDTPIDTFLMEM 241
>gi|47196001|emb|CAF94879.1| unnamed protein product [Tetraodon nigroviridis]
Length = 132
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 77/124 (62%)
Query: 163 VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCIL 222
V + I++ QE + + + L D +E C+KA++LFT + GL D VE LQ+++QC L
Sbjct: 4 VAFMDHIRVFQEQVEKLKVLHVDSAEYSCIKAIVLFTTDACGLSDVAHVEGLQEKSQCAL 63
Query: 223 GDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
+YVR +Y QP RFG+LLL LPSLR V + IE+LFF +G PI+ L+ DM S
Sbjct: 64 EEYVRAQYPNQPNRFGKLLLRLPSLRTVSSAVIEQLFFIRLVGKTPIETLIRDMLLSGSS 123
Query: 283 YETP 286
+ P
Sbjct: 124 FSWP 127
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 53/84 (63%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QP RFG+LLL LPSLR V + IE+LFF
Sbjct: 42 DACGLSDVAHVEGLQEKSQCALEEYVRAQYPNQPNRFGKLLLRLPSLRTVSSAVIEQLFF 101
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 102 IRLVGKTPIETLIRDMLLSGSSFS 125
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LFM V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 269 CQ-AADKQLFMLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 327
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 328 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 387
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + GD PI
Sbjct: 388 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLTGDTPI 447
Query: 270 QRLLGDM 276
L +M
Sbjct: 448 DTFLMEM 454
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 379 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 438
Query: 344 KETIGDIPIQRLLGDM 359
+ GD PI L +M
Sbjct: 439 FKLTGDTPIDTFLMEM 454
>gi|297263119|ref|XP_002798750.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Macaca mulatta]
Length = 648
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 440 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 499
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF + PG
Sbjct: 500 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFXSDHPG 559
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 560 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 619
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 620 GNVSIDSIIPYILKMETA 637
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 558 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 617
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 618 LIGNVSIDSIIPYILKMETA 637
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 274 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 333 TGLHVHRSSAHSAGVGAIFDRVLTELVSKMRDMHMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 452
Query: 270 QRLLGDM 276
L +M
Sbjct: 453 DTFLMEM 459
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 323 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 381
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 382 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 441
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 442 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 501
Query: 270 QRLLGDM 276
L +M
Sbjct: 502 DTFLMEM 508
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 433 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 492
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 493 FKLIGDTPIDTFLMEM 508
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 13/220 (5%)
Query: 58 PPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSK 117
P S+ +M +T+ P + I +A+K LF V W + + F L+
Sbjct: 258 PKTESYGDTNMENSTNDP-----VTNICHAADK-------QLFTLVEWAKRIPHFSDLTL 305
Query: 118 RDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEIL 176
DQ++LL+ W EL + + S+ +L+ R V + +++ E++
Sbjct: 306 EDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELV 365
Query: 177 ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
++ + + D SE GC++A++LF P+ GL + VE L+++ L Y + +Y QP R
Sbjct: 366 SKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVEGLREKVYATLEAYTKQKYPDQPGR 425
Query: 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
F +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 426 FAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 465
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 390 DAKGLSNPSEVEGLREKVYATLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 449
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 450 FKLIGDTPIDTFLMEM 465
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 274 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 333 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 452
Query: 270 QRLLGDM 276
L +M
Sbjct: 453 DTFLMEM 459
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 274 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 333 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 452
Query: 270 QRLLGDM 276
L +M
Sbjct: 453 DTFLMEM 459
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 264 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 322
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 323 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 382
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 383 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 442
Query: 270 QRLLGDM 276
L +M
Sbjct: 443 DTFLMEM 449
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 374 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 433
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 434 FKLIGDTPIDTFLMEM 449
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 274 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 333 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 452
Query: 270 QRLLGDM 276
L +M
Sbjct: 453 DTFLMEM 459
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 246 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 304
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 305 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 364
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 365 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 424
Query: 270 QRLLGDM 276
L +M
Sbjct: 425 DTFLMEM 431
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 356 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 415
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 416 FKLIGDTPIDTFLMEM 431
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 259 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 317
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 318 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 377
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 378 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 437
Query: 270 QRLLGDM 276
L +M
Sbjct: 438 DTFLMEM 444
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 369 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 428
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 429 FKLIGDTPIDTFLMEM 444
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 274 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 333 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 452
Query: 270 QRLLGDM 276
L +M
Sbjct: 453 DTFLMEM 459
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 269 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 327
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 328 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 387
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 388 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 447
Query: 270 QRLLGDM 276
L +M
Sbjct: 448 DTFLMEM 454
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 379 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 438
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 439 FKLIGDTPIDTFLMEM 454
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 269 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 327
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 328 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 387
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 388 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 447
Query: 270 QRLLGDM 276
L +M
Sbjct: 448 DTFLMEM 454
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 379 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 438
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 439 FKLIGDTPIDTFLMEM 454
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 274 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 333 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSISLKCLEHLFFFKLIGDTPI 452
Query: 270 QRLLGDM 276
L +M
Sbjct: 453 DTFLMEM 459
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSISLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 246 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 304
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 305 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 364
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 365 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 424
Query: 270 QRLLGDM 276
L +M
Sbjct: 425 DTFLMEM 431
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 356 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 415
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 416 FKLIGDTPIDTFLMEM 431
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 294 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 352
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 353 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 412
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 413 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 472
Query: 270 QRLLGDM 276
L +M
Sbjct: 473 DTFLMEM 479
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 404 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 463
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 464 FKLIGDTPIDTFLMEM 479
>gi|297263121|ref|XP_001091445.2| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Macaca mulatta]
Length = 596
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 101/198 (51%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF + PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFXSDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 246 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 304
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 305 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 364
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 365 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 424
Query: 270 QRLLGDM 276
L +M
Sbjct: 425 DTFLMEM 431
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 356 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 415
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 416 FKLIGDTPIDTFLMEM 431
>gi|355752946|gb|EHH56992.1| hypothetical protein EGM_06542, partial [Macaca fascicularis]
Length = 453
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 260 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 318
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 319 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 378
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 379 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 438
Query: 270 QRLLGDM 276
L +M
Sbjct: 439 DTFLMEM 445
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 370 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 429
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 430 FKLIGDTPIDTFLMEM 445
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 260 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 318
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 319 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 378
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 379 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 438
Query: 270 QRLLGDM 276
L +M
Sbjct: 439 DTFLMEM 445
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 370 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 429
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 430 FKLIGDTPIDTFLMEM 445
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 274 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 333 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 452
Query: 270 QRLLGDM 276
L +M
Sbjct: 453 DTFLMEM 459
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 279 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 337
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 338 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 397
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 398 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 457
Query: 270 QRLLGDM 276
L +M
Sbjct: 458 DTFLMEM 464
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 389 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 448
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 449 FKLIGDTPIDTFLMEM 464
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 274 CQ-AADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 333 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 452
Query: 270 QRLLGDM 276
L +M
Sbjct: 453 DTFLMEM 459
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 286 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 344
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 345 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 404
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 405 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 464
Query: 270 QRLLGDM 276
L +M
Sbjct: 465 DTFLMEM 471
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 396 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 455
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 456 FKLIGDTPIDTFLMEM 471
>gi|50539758|ref|NP_001002345.1| retinoic acid receptor RXR-gamma-B [Danio rerio]
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-B;
AltName: Full=Retinoid X receptor gamma-B
gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio]
gi|124054092|gb|ABM89230.1| retinoid X receptor gamma b [Danio rerio]
Length = 452
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L DQ++LL+ W EL + + SI +L+ R
Sbjct: 266 LFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSITVKDGILLGTGLHVHRS 325
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D +E GC++A++LF P+ GL ++ VE L+++
Sbjct: 326 SAHSAGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNSLEVEALREK 385
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 386 VYASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 444
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL ++ VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 369 DAKGLSNSLEVEALREKVYASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 428
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 429 FKLIGDTPIDTFLMEM 444
>gi|365176244|gb|AEW68002.1| retinoid X receptor [Halocynthia roretzi]
Length = 453
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 1/197 (0%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R LF V W + + F L DQ++LL+ W EL + + SI S+L+
Sbjct: 235 RQLFTLVEWAKRIPHFPKLVLDDQIILLRAGWNELLIASFSHRSIDVKDSILLASGLHVH 294
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQ 215
R V +++ E++++ R + D +E GC++A++LF P+ L D +E L+
Sbjct: 295 RHSAHQAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAIVLFNPDVKNLSDPAHIESLR 354
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
++ L Y R +Y QP RF +LLL LP+LR++ +E LFF + IGD PI + L D
Sbjct: 355 EKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDKFLMD 414
Query: 276 MYTMEKSYETPGLVDAQ 292
M S T AQ
Sbjct: 415 MLETPSSATTMQQYGAQ 431
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ L D +E L+++ L Y R +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 340 DVKNLSDPAHIESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 399
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI + L DM
Sbjct: 400 FKLIGDTPIDKFLMDM 415
>gi|358414696|ref|XP_887036.4| PREDICTED: retinoic acid receptor RXR-alpha isoform 4 [Bos taurus]
Length = 557
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 364 CQAAD-KQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 422
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 423 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 482
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 483 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 542
Query: 270 QRLLGDM 276
L +M
Sbjct: 543 DTFLMEM 549
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 474 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 533
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 534 FKLIGDTPIDTFLMEM 549
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 238 CQ-AADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 296
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 297 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 356
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 357 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 416
Query: 270 QRLLGDM 276
L +M
Sbjct: 417 DTFLMEM 423
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 348 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 407
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 408 FKLIGDTPIDTFLMEM 423
>gi|326930478|ref|XP_003211374.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-alpha-like [Meleagris gallopavo]
Length = 497
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 304 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 362
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 363 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 422
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 423 EVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 482
Query: 270 QRLLGDM 276
L +M
Sbjct: 483 DTFLMEM 489
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 414 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 473
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 474 FKLIGDTPIDTFLMEM 489
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 237 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 295
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 296 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPG 355
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 356 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 415
Query: 270 QRLLGDM 276
L +M
Sbjct: 416 DTFLMEM 422
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 347 DSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 406
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 407 FKLIGDTPIDTFLMEM 422
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 266 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 324
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 325 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPS 384
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 385 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 444
Query: 270 QRLLGDM 276
L +M
Sbjct: 445 DTFLMEM 451
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 376 DSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 435
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 436 FKLIGDTPIDTFLMEM 451
>gi|301770651|ref|XP_002920751.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ailuropoda
melanoleuca]
Length = 516
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 323 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 381
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 382 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 441
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 442 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 501
Query: 270 QRLLGDM 276
L +M
Sbjct: 502 DTFLMEM 508
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 433 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 492
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 493 FKLIGDTPIDTFLMEM 508
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 246 CQAAD-KQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 304
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 305 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMHMDKTELGCLRAIVLFNPDSKGLSNPA 364
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 365 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 424
Query: 270 QRLLGDM 276
L +M
Sbjct: 425 DTFLMEM 431
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 356 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 415
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 416 FKLIGDTPIDTFLMEM 431
>gi|410908455|ref|XP_003967706.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Takifugu rubripes]
Length = 601
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 9/199 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQ-LLLLQESWKELFLLHLAQWS----IPWDLSL 147
E+ +RLLF+++ W R + FQTL +D + L++ W ELF L +AQ S + LS
Sbjct: 393 ESASRLLFLSMHWARSIPAFQTLCGQDNDINLMKACWNELFALGMAQCSSIMNVGTILSA 452
Query: 148 LIN---CEKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+IN E+L + V+ V I +QE +LSPD E +KA++LF+P+ P
Sbjct: 453 IINHLQTSLQEEKLSAERVKLVMEHIWRMQEFCNSMLKLSPDSYEYAYLKAIVLFSPDHP 512
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 263
G+ + +E Q++A L DYV Y R +LL+ LP+LR + + E LFF
Sbjct: 513 GIDNTPQIERFQEKAYMELQDYVTRTYPEDCYRLSKLLVRLPALRLISANVTEELFFAGL 572
Query: 264 IGDIPIQRLLGDMYTMEKS 282
IG++ I ++ + ME +
Sbjct: 573 IGNVQIDSIIPYILKMETT 591
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PG+ + +E Q++A L DYV Y R +LL+ LP+LR + + E LFF
Sbjct: 512 PGIDNTPQIERFQEKAYMELQDYVTRTYPEDCYRLSKLLVRLPALRLISANVTEELFFAG 571
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 572 LIGNVQIDSIIPYILKMETT 591
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 296 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 354
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 355 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 414
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 415 EVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 474
Query: 270 QRLLGDM 276
L +M
Sbjct: 475 DTFLMEM 481
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 406 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 465
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 466 FKLIGDTPIDTFLMEM 481
>gi|402590411|gb|EJW84341.1| hypothetical protein WUBG_04747 [Wuchereria bancrofti]
Length = 537
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/250 (35%), Positives = 129/250 (51%), Gaps = 9/250 (3%)
Query: 34 LPPNGISSVKIPPTVLYPPSGLKSPPPPSHHHPSMFL----ATHQPPPHPGLLQILMSAE 89
+PPN + TVL+ L H S+ A PP + +
Sbjct: 270 IPPNAQHAYS--STVLFGEQLLAVSQSVGSHFSSIVTHLIHAEPYPPTACSSSSSSIGMD 327
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
E A+LLF AV W + + F L+ DQL LL+ SW ELF+++ AQ+ +P ++ L+
Sbjct: 328 NIYEFGAKLLFSAVEWAKNIPFFNELNDTDQLTLLRASWAELFVVNAAQFGMPVHVAPLL 387
Query: 150 NCEKARER--LPPDDVRV-NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
LP D + V + I++ Q + R + L D +E +KAVILF+ + GL
Sbjct: 388 AASGLHSSPPLPTDQLVVFMDRIRVFQGQIERLKALQMDLAEFCSLKAVILFSIDCCGLN 447
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE +Q++ Q L +Y R + Q RFGRLLL LPSLR++ S IE+LFF + +G+
Sbjct: 448 DVIRVETIQEKVQSALEEYCRTQKQLQIGRFGRLLLRLPSLRSISASVIEQLFFVKLVGE 507
Query: 267 IPIQRLLGDM 276
PI+ LL DM
Sbjct: 508 TPIEFLLRDM 517
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 13/136 (9%)
Query: 228 GRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK----SY 283
G +S P +L++ + +R V Q IERL +Q L + +++ S
Sbjct: 391 GLHSSPPLPTDQLVVFMDRIR-VFQGQIERL--------KALQMDLAEFCSLKAVILFSI 441
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE +Q++ Q L +Y R + Q RFGRLLL LPSLR++ S IE+LFF
Sbjct: 442 DCCGLNDVIRVETIQEKVQSALEEYCRTQKQLQIGRFGRLLLRLPSLRSISASVIEQLFF 501
Query: 344 KETIGDIPIQRLLGDM 359
+ +G+ PI+ LL DM
Sbjct: 502 VKLVGETPIEFLLRDM 517
>gi|432875136|ref|XP_004072692.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like,
partial [Oryzias latipes]
Length = 330
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 107/226 (47%), Gaps = 31/226 (13%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 107 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 166
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT
Sbjct: 167 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTSAM 226
Query: 203 PGLVDAQ-------------PVEMLQDQ---------AQCILGDYVRGRYSRQPTRFGRL 240
+ P EML Q C L + QP+RFG+L
Sbjct: 227 GAVASGVLLSDVDWSRDAGVPKEMLSCQLPATYPPQRTPCHLDPH-------QPSRFGKL 279
Query: 241 LLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
LL LPSLR V S IE+LFF +G PI+ L+ DM S+ P
Sbjct: 280 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWP 325
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 316 QPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYG 367
QP+RFG+LLL LPSLR V S IE+LFF +G PI+ L+ DM S+
Sbjct: 272 QPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFN 323
>gi|56090166|ref|NP_991120.1| nuclear receptor subfamily 2, group F, member 6 [Danio rerio]
gi|40807137|gb|AAH65330.1| Nuclear receptor subfamily 2, group F, member 6a [Danio rerio]
Length = 402
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 114/200 (57%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF + W R + F L +Q+ LL+ SW ELF+L+ AQ ++P ++ L+
Sbjct: 202 ELAARLLFSIIEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSALPLHMAPLLAAA 261
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
+ ER+ V +++++ Q+ + + +L D +E C+KA+ LF+P+ GL
Sbjct: 262 GFHSSPMSAERV----VSFMDQVRVFQDQVEKLTRLQVDSAEYSCLKAIALFSPDACGLT 317
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 318 DPAHVESLQEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 377
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM S P
Sbjct: 378 TPIETLIRDMQLSGSSISWP 397
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 49/76 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 312 DACGLTDPAHVESLQEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPASLISQLFF 371
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 372 MRLVGKTPIETLIRDM 387
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 1/181 (0%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L V W + + F +L DQ++LL+ W EL + + SI S+L+
Sbjct: 324 RQLVTLVEWAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDVKDSILLASGLHVH 383
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQ 215
R V +++ E++++ R + D +E GC++A++LF P+ L D+ +E L+
Sbjct: 384 RHSAHQAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAIVLFNPDVKNLSDSAHIESLR 443
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
++ L Y R +Y QP RF +LLL LP+LR++ +E LFF + IGD PI + L +
Sbjct: 444 EKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDKFLMN 503
Query: 276 M 276
M
Sbjct: 504 M 504
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ L D+ +E L+++ L Y R +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 429 DVKNLSDSAHIESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 488
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI + L +M
Sbjct: 489 FKLIGDTPIDKFLMNM 504
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 265 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 323
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 324 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPG 383
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 384 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 443
Query: 270 QRLLGDM 276
L +M
Sbjct: 444 DTFLMEM 450
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 375 DSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 435 FKLIGDTPIDTFLMEM 450
>gi|327276463|ref|XP_003222989.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Anolis
carolinensis]
Length = 451
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 258 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 316
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 317 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 376
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 377 EVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 436
Query: 270 QRLLGDM 276
L +M
Sbjct: 437 DTFLMEM 443
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 368 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 428 FKLIGDTPIDTFLMEM 443
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 265 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 323
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 324 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 383
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 384 EVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 443
Query: 270 QRLLGDM 276
L +M
Sbjct: 444 DTFLMEM 450
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 375 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 435 FKLIGDTPIDTFLMEM 450
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 154 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 213
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 214 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 273
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 274 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDSFLMEM 332
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 257 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 316
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 317 FKLIGDTPIDSFLMEM 332
>gi|312065719|ref|XP_003135926.1| hypothetical protein LOAG_00338 [Loa loa]
gi|307768898|gb|EFO28132.1| hypothetical protein LOAG_00338 [Loa loa]
Length = 212
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/187 (41%), Positives = 111/187 (59%), Gaps = 3/187 (1%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E A+LLF AV W + + F LS DQL LL+ SW ELF+++ AQ+ +P ++ L+
Sbjct: 6 EFGAKLLFSAVEWAKNIPFFNELSDTDQLTLLRASWAELFVVNAAQFGMPVHVAPLLAAS 65
Query: 153 KARER--LPPDDVRV-NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
LP D + V + I++ Q + R + L D +E +KAVILF+ + GL D
Sbjct: 66 GLHSSPPLPTDQLVVFMDRIRVFQGQIERLKALQMDSAEFCSLKAVILFSVDCCGLNDVI 125
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE +Q++ Q L +Y R + Q RFGRLLL LPSLR++ S IE+LFF + +G+ PI
Sbjct: 126 RVETIQEKVQSALEEYCRTQKQLQVGRFGRLLLRLPSLRSISASVIEQLFFVKLVGETPI 185
Query: 270 QRLLGDM 276
+ LL DM
Sbjct: 186 EFLLRDM 192
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 50/78 (64%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + GL D VE +Q++ Q L +Y R + Q RFGRLLL LPSLR++ S IE+L
Sbjct: 115 SVDCCGLNDVIRVETIQEKVQSALEEYCRTQKQLQVGRFGRLLLRLPSLRSISASVIEQL 174
Query: 342 FFKETIGDIPIQRLLGDM 359
FF + +G+ PI+ LL DM
Sbjct: 175 FFVKLVGETPIEFLLRDM 192
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 154 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 213
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 214 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 273
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 274 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 332
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 257 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 316
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 317 FKLIGDTPIDTFLMEM 332
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 154 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 213
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 214 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 273
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 274 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 332
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 257 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 316
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 317 FKLIGDTPIDTFLMEM 332
>gi|410979449|ref|XP_003996096.1| PREDICTED: retinoic acid receptor RXR-alpha [Felis catus]
Length = 527
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 334 CQAAD-KQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 392
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 393 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 452
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 453 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 512
Query: 270 QRLLGDM 276
L +M
Sbjct: 513 DTFLMEM 519
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 444 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 503
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 504 FKLIGDTPIDTFLMEM 519
>gi|348574546|ref|XP_003473051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cavia porcellus]
Length = 549
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 356 CQAAD-KQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 414
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 415 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 474
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 475 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 534
Query: 270 QRLLGDM 276
L +M
Sbjct: 535 DTFLMEM 541
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 466 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 525
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 526 FKLIGDTPIDTFLMEM 541
>gi|262070639|gb|ACY08798.1| ultraspiracle, partial [Tribolium madens]
Length = 284
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 103/180 (57%), Gaps = 2/180 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L F V+W + + F +L DQ+LLL+ W EL + + S+ ++++
Sbjct: 104 CQATNKQL-FQLVQWAKLIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSMQAQDAIVLA 162
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ V V N +++ E++ + +++ D +E GC++A+IL+ P+ G+ Q
Sbjct: 163 TGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQ 222
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF + IGD+PI
Sbjct: 223 EVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPI 282
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ G+ Q VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF
Sbjct: 214 DVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFF 273
Query: 344 KETIGDIPI 352
+ IGD+PI
Sbjct: 274 FKLIGDVPI 282
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 275 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 333
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 334 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 393
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 394 EVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 453
Query: 270 QRLLGDM 276
L +M
Sbjct: 454 DTFLMEM 460
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 385 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 444
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 445 FKLIGDTPIDTFLMEM 460
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 394 CQAAD-KQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 452
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 453 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 512
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 513 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 572
Query: 270 QRLLGDM 276
L +M
Sbjct: 573 DTFLMEM 579
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 504 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 563
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 564 FKLIGDTPIDTFLMEM 579
>gi|154183749|gb|ABS70715.1| retinoid X receptor a isoform [Nucella lapillus]
Length = 441
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S +L+
Sbjct: 246 CQ-AADKQLFTLVEWAKRIPHFIELPLEDQVILLRAGWNELLIAGFSHRSTQVTDGILLA 304
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ GL Q
Sbjct: 305 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQAVQ 364
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 365 EVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 424
Query: 270 QRLLGDM 276
L +M
Sbjct: 425 DTFLMEM 431
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 356 DAKGLQAVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 415
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 416 FKLIGDTPIDTFLMEM 431
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 13/220 (5%)
Query: 58 PPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSK 117
P ++ SM +T+ P + I +A+K LF V W + + F L
Sbjct: 226 PKTEAYMESSMSNSTNDP-----VTNICQAADK-------QLFTLVEWAKRIPHFSDLPL 273
Query: 118 RDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEIL 176
DQ++LL+ W EL + + S+ +L+ R V + +++ E++
Sbjct: 274 DDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELV 333
Query: 177 ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
++ R + D +E GC++A++LF P+ GL + VE L+++ L Y + Y QP R
Sbjct: 334 SKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGR 393
Query: 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
F +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 394 FAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 433
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 358 DAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 417
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 418 FKLIGDTPIDTFLMEM 433
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 240 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 298
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 299 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 358
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 359 EVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 418
Query: 270 QRLLGDM 276
L +M
Sbjct: 419 DTFLMEM 425
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 350 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 409
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 410 FKLIGDTPIDTFLMEM 425
>gi|400270861|gb|AFP75253.1| nuclear receptor subfamily 2 group C member 2, partial [Tupaia
belangeri]
Length = 566
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 8/183 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 383 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 442
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 443 VNHLQNSMQEDKLSGDRIKQVMEHIWKLQEFCNSMARLDVDGYEYAYLKAIVLFSPDHPG 502
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 503 LSSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 562
Query: 265 GDI 267
G++
Sbjct: 563 GNV 565
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 501 PGLSSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 560
Query: 346 TIGDI 350
IG++
Sbjct: 561 LIGNV 565
>gi|296481981|tpg|DAA24096.1| TPA: retinoid X receptor, alpha [Bos taurus]
Length = 404
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 211 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 269
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 270 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 329
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 330 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 389
Query: 270 QRLLGDM 276
L +M
Sbjct: 390 DTFLMEM 396
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 321 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 380
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 381 FKLIGDTPIDTFLMEM 396
>gi|41282088|ref|NP_571292.2| retinoic acid receptor RXR-gamma-A [Danio rerio]
gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-A;
AltName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Retinoid X receptor alpha; AltName: Full=Retinoid X
receptor gamma-A
gi|37590367|gb|AAH59576.1| Retinoid x receptor, gamma a [Danio rerio]
Length = 441
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 13/220 (5%)
Query: 58 PPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSK 117
P ++ SM +T+ P + I +A+K LF V W + + F L
Sbjct: 226 PKTEAYMESSMSNSTNDP-----VTNICQAADK-------QLFTLVEWAKRIPHFSDLPL 273
Query: 118 RDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEIL 176
DQ++LL+ W EL + + S+ +L+ R V + +++ E++
Sbjct: 274 DDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELV 333
Query: 177 ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
++ R + D +E GC++A++LF P+ GL + VE L+++ L Y + Y QP R
Sbjct: 334 SKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGR 393
Query: 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
F +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 394 FAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 433
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 358 DAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 417
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 418 FKLIGDTPIDTFLMEM 433
>gi|224983542|pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
gi|284055748|pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 51 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 109
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 110 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 169
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 170 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 229
Query: 270 QRLLGDM 276
L +M
Sbjct: 230 DTFLMEM 236
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 161 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 220
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 221 FKLIGDTPIDTFLMEM 236
>gi|47224450|emb|CAG08700.1| unnamed protein product [Tetraodon nigroviridis]
Length = 597
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 106/199 (53%), Gaps = 9/199 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQ-LLLLQESWKELFLLHLAQWS----IPWDLSL 147
E+ +RLLF+++ W R + FQTL +D + L++ W ELF L +AQ S + LS
Sbjct: 393 ESASRLLFLSMHWARSIPAFQTLCGQDNDINLMKACWNELFALGMAQCSSIMNVGTILSA 452
Query: 148 LIN---CEKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+IN E+L + V+ V I +QE +L PD E +KA++LF+P+ P
Sbjct: 453 IINHLQTSLQEEKLSAERVKLVMEHIWRMQEFCNSMLKLCPDAYEYAYLKAIVLFSPDHP 512
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 263
G+ + +E Q++A L DYV Y R +LL+ LP+LR + + E LFF
Sbjct: 513 GINNTPQIERFQEKAYMELQDYVSRTYPEDSYRLSKLLVRLPALRLISAAVTEELFFAGL 572
Query: 264 IGDIPIQRLLGDMYTMEKS 282
IG++ I ++ + ME +
Sbjct: 573 IGNVQIDSIIPYILKMETT 591
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PG+ + +E Q++A L DYV Y R +LL+ LP+LR + + E LFF
Sbjct: 512 PGINNTPQIERFQEKAYMELQDYVSRTYPEDSYRLSKLLVRLPALRLISAAVTEELFFAG 571
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 572 LIGNVQIDSIIPYILKMETT 591
>gi|84028533|gb|ABC49725.1| retinoid X receptor 2 [Petromyzon marinus]
Length = 512
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 4/200 (2%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 284 CQAADKQL-FTLVEWSKRVPHFSELPLDDQVILLRAGWNELHIASFSHRSIGVSDGILLA 342
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++++ R ++ D +E GC++A++LF P+ GL
Sbjct: 343 TGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRAIVLFNPDAKGLSSPS 402
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE +++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 403 GVEAFREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 462
Query: 270 QRLLGDMYTMEKSYETPGLV 289
L +M +E +TP +
Sbjct: 463 DTFLMEM--LEAPPKTPSFI 480
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE +++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 394 DAKGLSSPSGVEAFREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 453
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 454 FKLIGDTPIDTFLMEM 469
>gi|262070635|gb|ACY08796.1| ultraspiracle, partial [Tribolium brevicornis]
Length = 284
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 103/180 (57%), Gaps = 2/180 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L F V+W + + F +L DQ+LLL+ W EL + + S+ ++++
Sbjct: 104 CQATNKQL-FQLVQWAKHIPHFTSLPISDQVLLLRAGWNELLIAAFSHRSMQAQDAIVLA 162
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ V V N +++ E++ + +++ D +E GC++A+IL+ P+ G+ Q
Sbjct: 163 TGLTVNKQTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQ 222
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF + IGD+PI
Sbjct: 223 EVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPI 282
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ G+ Q VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF
Sbjct: 214 DVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFF 273
Query: 344 KETIGDIPI 352
+ IGD+PI
Sbjct: 274 FKLIGDVPI 282
>gi|157831763|pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 89 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 147
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 148 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 207
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 208 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 267
Query: 270 QRLLGDM 276
L +M
Sbjct: 268 DTFLMEM 274
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 199 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 258
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 259 FKLIGDTPIDTFLMEM 274
>gi|291223399|ref|XP_002731697.1| PREDICTED: retinoid X receptor-like protein [Saccoglossus
kowalevskii]
Length = 497
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 8/206 (3%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
T+ P+ + I +A+K LF V W + + F L DQ++LL+ W EL
Sbjct: 292 TYVDTPNDPVTNICQAADK-------QLFTLVEWAKRIPHFTELPLDDQVILLRAGWNEL 344
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECG 190
+ + SI +L+ R V +++ E++A+ R++ D +E G
Sbjct: 345 LIAAFSHRSIAVKDGILLATGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELG 404
Query: 191 CMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV 250
C++A++LF P+ L Q VE L+++ L +Y R Y +P RF +LLL LP+LR++
Sbjct: 405 CLRAIVLFNPDAKNLGTVQKVEELREKVYASLEEYCRKTYPDEPGRFAKLLLRLPALRSI 464
Query: 251 RQSTIERLFFKETIGDIPIQRLLGDM 276
+E LFF + IGD PI L +M
Sbjct: 465 GLKCLEHLFFFKLIGDTPIDTFLMEM 490
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ L Q VE L+++ L +Y R Y +P RF +LLL LP+LR++ +E LFF
Sbjct: 415 DAKNLGTVQKVEELREKVYASLEEYCRKTYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 474
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 475 FKLIGDTPIDTFLMEM 490
>gi|283464101|gb|ADB22634.1| retinoid X receptor-like protein [Saccoglossus kowalevskii]
Length = 531
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 8/206 (3%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
T+ P+ + I +A+K LF V W + + F L DQ++LL+ W EL
Sbjct: 326 TYVDTPNDPVTNICQAADK-------QLFTLVEWAKRIPHFTELPLDDQVILLRAGWNEL 378
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECG 190
+ + SI +L+ R V +++ E++A+ R++ D +E G
Sbjct: 379 LIAAFSHRSIAVKDGILLATGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELG 438
Query: 191 CMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV 250
C++A++LF P+ L Q VE L+++ L +Y R Y +P RF +LLL LP+LR++
Sbjct: 439 CLRAIVLFNPDAKNLGTVQKVEELREKVYASLEEYCRKTYPDEPGRFAKLLLRLPALRSI 498
Query: 251 RQSTIERLFFKETIGDIPIQRLLGDM 276
+E LFF + IGD PI L +M
Sbjct: 499 GLKCLEHLFFFKLIGDTPIDTFLMEM 524
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ L Q VE L+++ L +Y R Y +P RF +LLL LP+LR++ +E LFF
Sbjct: 449 DAKNLGTVQKVEELREKVYASLEEYCRKTYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 509 FKLIGDTPIDTFLMEM 524
>gi|105872963|gb|ABF74729.1| retinoid X receptor-like protein [Daphnia magna]
gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna]
gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex]
Length = 400
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 99/184 (53%), Gaps = 1/184 (0%)
Query: 94 TTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK 153
T + LF V W + + F L DQ++LL+ W EL + + S+ +++
Sbjct: 210 ATDKQLFQLVEWAKHIPHFTELPLDDQVVLLRAGWNELLIAAFSHRSVGVKDGIVLATGL 269
Query: 154 ARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
R V + +++ E++++ R++ D +E GC++A+ILF P+ GL VE
Sbjct: 270 VIHRNSAHQAGVGSIFDRVLTELVSKMREMKLDLAELGCLRAIILFNPDPKGLKSVSQVE 329
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
L+++ L +Y R Y+ +P RF +LLL LP+LR++ +E LFF + IGD PI+
Sbjct: 330 ALREKVYATLEEYTRTNYADEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIESF 389
Query: 273 LGDM 276
L +M
Sbjct: 390 LLEM 393
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL VE L+++ L +Y R Y+ +P RF +LLL LP+LR++ +E LFF +
Sbjct: 321 GLKSVSQVEALREKVYATLEEYTRTNYADEPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 380
Query: 347 IGDIPIQRLLGDM 359
IGD PI+ L +M
Sbjct: 381 IGDTPIESFLLEM 393
>gi|157117591|ref|XP_001658841.1| nuclear receptor [Aedes aegypti]
Length = 299
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 11/185 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
ET A+LLF+AV+W + + F L DQ +LL+ESW ELF++ AQW +P D +C
Sbjct: 122 ETAAKLLFLAVKWAKSVPSFLQLPTADQKVLLEESWAELFVITAAQWGLPIDNGEFCSCC 181
Query: 153 KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
+ PD + N + + + +F D E C+KA+ILF E L + +
Sbjct: 182 LSS----PDFITRNPSARRLHAAIQQFTLARVDYREAACLKALILFRSENSNLYSSHEIL 237
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLR-AVRQSTIERLFFKETIGDIPIQR 271
+LQDQ +L + G R G LLL+LP ++ A ++ + F++T+G++ I+R
Sbjct: 238 LLQDQTISLLHEKCGG------VRLGHLLLLLPCIKSAANPKILQEMLFRKTVGEVAIER 291
Query: 272 LLGDM 276
LLGD+
Sbjct: 292 LLGDL 296
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 16/112 (14%)
Query: 249 AVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDY 308
A++Q T+ R+ ++E ++ L+ ++ E S L + + +LQDQ +L +
Sbjct: 200 AIQQFTLARVDYREAAC---LKALI--LFRSENS----NLYSSHEILLLQDQTISLLHEK 250
Query: 309 VRGRYSRQPTRFGRLLLMLPSLR-AVRQSTIERLFFKETIGDIPIQRLLGDM 359
G R G LLL+LP ++ A ++ + F++T+G++ I+RLLGD+
Sbjct: 251 CGG------VRLGHLLLLLPCIKSAANPKILQEMLFRKTVGEVAIERLLGDL 296
>gi|13399885|pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399887|pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399893|pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
gi|14278179|pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278180|pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278181|pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278182|pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278313|pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278314|pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278315|pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278316|pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|17943020|pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
gi|78101296|pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101298|pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101300|pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101302|pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|321159910|pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
gi|321159912|pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 45 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 103
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 104 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 163
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 164 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 223
Query: 270 QRLLGDM 276
L +M
Sbjct: 224 DTFLMEM 230
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 155 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 214
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 215 FKLIGDTPIDTFLMEM 230
>gi|427785707|gb|JAA58305.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 433
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V+W + + F+ L D+++LL+ W EL + + SI +++
Sbjct: 241 CQAAD-RQLHQLVQWAKHIPHFEELPIEDRMVLLKAGWNELLIAAFSHRSIDVRDGIVLA 299
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+R V +++ E++A+ R++ D +E GC++AV+LF PE GL
Sbjct: 300 TGLVVQRHSAHSAGVGAIFDRVLTELVAKMREMKMDRTELGCLRAVVLFNPEAKGLRSTA 359
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L D+ R +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 360 QVEALREKVYAALEDHCRQQYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 419
Query: 270 QRLLGDM 276
L M
Sbjct: 420 DNFLITM 426
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL VE L+++ L D+ R +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 351 EAKGLRSTAQVEALREKVYAALEDHCRQQYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 410
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L M
Sbjct: 411 FKLIGDTPIDNFLITM 426
>gi|211939465|pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939466|pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939467|pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939468|pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L+ + V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 33 CQAADKQLVTL-VEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGILLA 91
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R + D +E GC++A++LF P+ GL D
Sbjct: 92 SGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPS 151
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 152 LVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 211
Query: 270 QRLLGDM 276
L +M
Sbjct: 212 DTFLMEM 218
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE L+++ L +Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 143 DAKGLTDPSLVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 202
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 203 FKLIGDTPIDTFLMEM 218
>gi|154183751|gb|ABS70716.1| retinoid X receptor b isoform [Nucella lapillus]
Length = 446
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S +L+
Sbjct: 251 CQ-AADKQLFTLVEWAKRIPHFIELPLEDQVILLRAGWNELLIAGFSHRSTQVTDGILLA 309
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ GL Q
Sbjct: 310 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQAVQ 369
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 370 EVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 429
Query: 270 QRLLGDM 276
L +M
Sbjct: 430 DTFLMEM 436
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 361 DAKGLQAVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 420
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 421 FKLIGDTPIDTFLMEM 436
>gi|56967064|pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
gi|56967068|pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 45 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 103
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 104 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 163
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 164 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 223
Query: 270 QRLLGDM 276
L +M
Sbjct: 224 DTFLMEM 230
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 155 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 214
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 215 FKLIGDTPIDTFLMEM 230
>gi|384482349|pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 49 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 107
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 108 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 167
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 168 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 227
Query: 270 QRLLGDM 276
L +M
Sbjct: 228 DTFLMEM 234
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 159 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 218
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 219 FKLIGDTPIDTFLMEM 234
>gi|348533850|ref|XP_003454417.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Oreochromis niloticus]
Length = 426
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 20/213 (9%)
Query: 77 PHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHL 136
PH + I +A+K LF V W + + F L DQ++LL+ W EL +
Sbjct: 213 PHDAVSNICQTADK-------QLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 265
Query: 137 AQWSIPWDLSLLINCEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQLS 183
+ SIP +L+ E R+ V + E+ +++ E++ + R +
Sbjct: 266 SHRSIPLKDGVLLASELQRDSAHSAGVGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMQ 325
Query: 184 PDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLM 243
D E GC++A++LF P+ GL + VE+L+++ L Y + +Y Q RF +LLL
Sbjct: 326 MDKIELGCLRAIVLFNPDAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLR 385
Query: 244 LPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
LP+LR++ +E LFF + IGD PI L +M
Sbjct: 386 LPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 418
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 343 DAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 402
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 403 FKLIGDTPIDTFLMEM 418
>gi|9955002|pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
gi|9955003|pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 46 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 104
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 105 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 164
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 165 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 224
Query: 270 QRLLGDM 276
L +M
Sbjct: 225 DTFLMEM 231
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 156 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 215
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 216 FKLIGDTPIDTFLMEM 231
>gi|308198436|pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 47 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 105
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 106 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 165
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 166 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 225
Query: 270 QRLLGDM 276
L +M
Sbjct: 226 DTFLMEM 232
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 157 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 216
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 217 FKLIGDTPIDTFLMEM 232
>gi|56965939|pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
gi|223365895|pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|223365897|pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|226887770|pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
gi|226887772|pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 49 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 107
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 108 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 167
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 168 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 227
Query: 270 QRLLGDM 276
L +M
Sbjct: 228 DTFLMEM 234
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 159 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 218
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 219 FKLIGDTPIDTFLMEM 234
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 274 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 333 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMLMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 452
Query: 270 QRLLGDM 276
L +M
Sbjct: 453 DTFLMEM 459
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 278 CQ-AADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 336
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 337 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPG 396
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 397 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 456
Query: 270 QRLLGDM 276
L +M
Sbjct: 457 DTFLMEM 463
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 388 DSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 447
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 448 FKLIGDTPIDTFLMEM 463
>gi|156556067|emb|CAO79103.1| PNR-like [Aedes aegypti]
gi|403182930|gb|EAT40209.2| AAEL008043-PA [Aedes aegypti]
Length = 422
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 11/185 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
ET A+LLF+AV+W + + F L DQ +LL+ESW ELF++ AQW +P D +C
Sbjct: 245 ETAAKLLFLAVKWAKSVPSFLQLPTADQKVLLEESWAELFVITAAQWGLPIDNGEFCSCC 304
Query: 153 KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
+ PD + N + + + +F D E C+KA+ILF E L + +
Sbjct: 305 LSS----PDFITRNPSARRLHAAIQQFTLARVDYREAACLKALILFRSENSNLYSSHEIL 360
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLR-AVRQSTIERLFFKETIGDIPIQR 271
+LQDQ +L + G R G LLL+LP ++ A ++ + F++T+G++ I+R
Sbjct: 361 LLQDQTISLLHEKCGG------VRLGHLLLLLPCIKSAANPKILQEMLFRKTVGEVAIER 414
Query: 272 LLGDM 276
LLGD+
Sbjct: 415 LLGDL 419
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 16/112 (14%)
Query: 249 AVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDY 308
A++Q T+ R+ ++E ++ L+ ++ E S L + + +LQDQ +L +
Sbjct: 323 AIQQFTLARVDYREAAC---LKALI--LFRSENS----NLYSSHEILLLQDQTISLLHEK 373
Query: 309 VRGRYSRQPTRFGRLLLMLPSLR-AVRQSTIERLFFKETIGDIPIQRLLGDM 359
G R G LLL+LP ++ A ++ + F++T+G++ I+RLLGD+
Sbjct: 374 CGG------VRLGHLLLLLPCIKSAANPKILQEMLFRKTVGEVAIERLLGDL 419
>gi|1710719|sp|P51128.1|RXRA_XENLA RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
Length = 488
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 295 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 353
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 354 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPL 413
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 414 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 473
Query: 270 QRLLGDM 276
L +M
Sbjct: 474 DTFLMEM 480
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 405 DSKGLSNPLEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 464
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 465 FKLIGDTPIDTFLMEM 480
>gi|24987814|pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
gi|24987816|pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
gi|24987862|pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987864|pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987866|pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987868|pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|158429278|pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|158429280|pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
gi|158429282|pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|237640540|pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
gi|255917832|pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917834|pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917836|pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|312207941|pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207942|pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207943|pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|312207944|pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|333944482|pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944483|pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944486|pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944487|pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944488|pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944489|pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|374977596|pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
gi|374977598|pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 47 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 105
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 106 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 165
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 166 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 225
Query: 270 QRLLGDM 276
L +M
Sbjct: 226 DTFLMEM 232
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 157 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 216
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 217 FKLIGDTPIDTFLMEM 232
>gi|262070637|gb|ACY08797.1| ultraspiracle, partial [Tribolium freemani]
Length = 284
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 103/180 (57%), Gaps = 2/180 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T + LF V+W + + F +L DQ+LLL+ W EL + + S+ ++++
Sbjct: 104 CQ-ATHKQLFQLVQWAKLVPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSMQAQDAIVLA 162
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ V V N +++ E++ + +++ D +E GC++A+IL+ P+ G+ Q
Sbjct: 163 TGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQ 222
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF + IGD+PI
Sbjct: 223 EVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPI 282
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ G+ Q VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF
Sbjct: 214 DVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFF 273
Query: 344 KETIGDIPI 352
+ IGD+PI
Sbjct: 274 FKLIGDVPI 282
>gi|359070758|ref|XP_002691733.2| PREDICTED: retinoic acid receptor RXR-alpha [Bos taurus]
Length = 756
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 563 CQAAD-KQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 621
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 622 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 681
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 682 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 741
Query: 270 QRLLGDM 276
L +M
Sbjct: 742 DTFLMEM 748
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 673 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 732
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 733 FKLIGDTPIDTFLMEM 748
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 246 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 304
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 305 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMLMDKTELGCLRAIVLFNPDSKGLSNPA 364
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 365 EVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 424
Query: 270 QRLLGDM 276
L +M
Sbjct: 425 DTFLMEM 431
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 356 DSKGLSNPAEVEALREKVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 415
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 416 FKLIGDTPIDTFLMEM 431
>gi|410905545|ref|XP_003966252.1| PREDICTED: retinoic acid receptor RXR-beta-A-like [Takifugu
rubripes]
Length = 404
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 20/213 (9%)
Query: 77 PHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHL 136
PH + I +A+K LF V W + + F L DQ++LL+ W EL +
Sbjct: 191 PHDAVSNICQTADK-------QLFALVEWAKRIPHFSELPLEDQVILLRAGWNELLIASF 243
Query: 137 AQWSIPWDLSLLINCEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQLS 183
+ SI +L+ E R+ V + E+ +++ E++ + R +
Sbjct: 244 SHRSINSKDGVLLASELQRDSANSAGVGAIFDRENVQSAEVGAIFDRVLTELVNKMRDMQ 303
Query: 184 PDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLM 243
D +E GC++A++LF P+ GL + VE+L+++ L Y + RY Q RF +LLL
Sbjct: 304 MDKTELGCLRAIVLFNPDAKGLSKSSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLR 363
Query: 244 LPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
LP+LR++ +E LFF + IGD PI L +M
Sbjct: 364 LPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 396
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + RY Q RF +LLL LP+LR++ +E LFF
Sbjct: 321 DAKGLSKSSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 380
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 381 FKLIGDTPIDTFLMEM 396
>gi|348533852|ref|XP_003454418.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 3
[Oreochromis niloticus]
Length = 434
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 20/213 (9%)
Query: 77 PHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHL 136
PH + I +A+K LF V W + + F L DQ++LL+ W EL +
Sbjct: 221 PHDAVSNICQTADK-------QLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 273
Query: 137 AQWSIPWDLSLLINCEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQLS 183
+ SIP +L+ E R+ V + E+ +++ E++ + R +
Sbjct: 274 SHRSIPLKDGVLLASELQRDSAHSAGVGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMQ 333
Query: 184 PDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLM 243
D E GC++A++LF P+ GL + VE+L+++ L Y + +Y Q RF +LLL
Sbjct: 334 MDKIELGCLRAIVLFNPDAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLR 393
Query: 244 LPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
LP+LR++ +E LFF + IGD PI L +M
Sbjct: 394 LPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 426
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 351 DAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 410
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 411 FKLIGDTPIDTFLMEM 426
>gi|61679483|pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679485|pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679491|pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
gi|61679493|pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 43 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 101
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 102 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 161
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 162 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 221
Query: 270 QRLLGDM 276
L +M
Sbjct: 222 DTFLMEM 228
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 153 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 212
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 213 FKLIGDTPIDTFLMEM 228
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 410 CQAAD-KQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 468
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 469 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 528
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 529 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 588
Query: 270 QRLLGDM 276
L +M
Sbjct: 589 DTFLMEM 595
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 520 DSKGLSNPAEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 579
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 580 FKLIGDTPIDTFLMEM 595
>gi|357380532|pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 41 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 99
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 100 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 159
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 160 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 219
Query: 270 QRLLGDM 276
L +M
Sbjct: 220 DTFLMEM 226
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 151 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 210
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 211 FKLIGDTPIDTFLMEM 226
>gi|312208011|pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 42 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 100
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 101 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 160
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 161 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 220
Query: 270 QRLLGDM 276
L +M
Sbjct: 221 DTFLMEM 227
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 152 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 211
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 212 FKLIGDTPIDTFLMEM 227
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 193 CQ-AADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 251
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 252 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 311
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 312 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 371
Query: 270 QRLLGDM 276
L +M
Sbjct: 372 DTFLMEM 378
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 303 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 362
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 363 FKLIGDTPIDTFLMEM 378
>gi|33386531|emb|CAD45002.1| retinoid X receptor beta [Takifugu rubripes]
Length = 370
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 20/213 (9%)
Query: 77 PHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHL 136
PH + I +A+K LF V W + + F L DQ++LL+ W EL +
Sbjct: 157 PHDAVSNICQTADK-------QLFALVEWAKRIPHFSELPLEDQVILLRAGWNELLIASF 209
Query: 137 AQWSIPWDLSLLINCEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQLS 183
+ SI +L+ E R+ V + E+ +++ E++ + R +
Sbjct: 210 SHRSINSKDGVLLASELQRDSANSAGVGAIFDRENVQSAEVGAIFDRVLTELVNKMRDMQ 269
Query: 184 PDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLM 243
D +E GC++A++LF P+ GL + VE+L+++ L Y + RY Q RF +LLL
Sbjct: 270 MDKTELGCLRAIVLFNPDAKGLSKSSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLR 329
Query: 244 LPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
LP+LR++ +E LFF + IGD PI L +M
Sbjct: 330 LPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 362
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + RY Q RF +LLL LP+LR++ +E LFF
Sbjct: 287 DAKGLSKSSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 346
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 347 FKLIGDTPIDTFLMEM 362
>gi|348504634|ref|XP_003439866.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 1
[Oreochromis niloticus]
Length = 453
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S+ +L+
Sbjct: 260 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLA 318
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++++ + + D +E GC++A++LF P+ GL +
Sbjct: 319 TGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPS 378
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 379 EVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 438
Query: 270 QRLLGDM 276
L +M
Sbjct: 439 DTFLMEM 445
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 370 DAKGLSNPSEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 429
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 430 FKLIGDTPIDTFLMEM 445
>gi|47225542|emb|CAG12025.1| unnamed protein product [Tetraodon nigroviridis]
Length = 370
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 20/213 (9%)
Query: 77 PHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHL 136
PH + I +A+K LF V W + + F L DQ++LL+ W EL +
Sbjct: 157 PHDAVSNICQTADK-------QLFALVEWAKRIPHFSELPLEDQVILLRAGWNELLIASF 209
Query: 137 AQWSIPWDLSLLINCEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQLS 183
+ SI +L+ E R+ V + E+ +++ E++ + R +
Sbjct: 210 SHRSINSKDGVLLASELQRDSANSAGVGAIFDRENVQSAEVGAIFDRVLTELVNKMRDMQ 269
Query: 184 PDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLM 243
D +E GC++A++LF P+ GL + VE+L+++ L Y + RY Q RF +LLL
Sbjct: 270 MDKTELGCLRAIVLFNPDAKGLSKSSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLR 329
Query: 244 LPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
LP+LR++ +E LFF + IGD PI L +M
Sbjct: 330 LPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 362
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + RY Q RF +LLL LP+LR++ +E LFF
Sbjct: 287 DAKGLSKSSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 346
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 347 FKLIGDTPIDTFLMEM 362
>gi|58177375|pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177376|pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177377|pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177378|pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 43 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 101
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 102 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 161
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 162 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 221
Query: 270 QRLLGDM 276
L +M
Sbjct: 222 DTFLMEM 228
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 153 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 212
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 213 FKLIGDTPIDTFLMEM 228
>gi|5631312|dbj|BAA82618.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 363
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%), Gaps = 1/185 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
+ R L V W + + F +L DQ++LL+ W EL + + SI S+L+
Sbjct: 144 KAADRQLVTLVEWAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDVKDSILLASG 203
Query: 153 KARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R V +++ E++++ R + D +E GC++A++LF P+ L D+ +
Sbjct: 204 LHVHRHSAHQAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAIVLFNPDVKNLSDSAHI 263
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
E L+++ L Y R +Y QP RF +LLL LP+LR++ +E LFF + IGD PI +
Sbjct: 264 ESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDK 323
Query: 272 LLGDM 276
L +M
Sbjct: 324 FLMNM 328
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ L D+ +E L+++ L Y R +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 253 DVKNLSDSAHIESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 312
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI + L +M
Sbjct: 313 FKLIGDTPIDKFLMNM 328
>gi|239782043|pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 42 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 100
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 101 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 160
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 161 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 220
Query: 270 QRLLGDM 276
L +M
Sbjct: 221 DTFLMEM 227
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 152 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 211
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 212 FKLIGDTPIDTFLMEM 227
>gi|307194605|gb|EFN76894.1| Retinoic acid receptor RXR-alpha-A [Harpegnathos saltator]
Length = 389
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
T + LF V W + + F +L DQ+LLL+ W EL + + SI +++
Sbjct: 198 NATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSIDVKDGIVLATG 257
Query: 153 KARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R V +++ E++++ R++ D +E GC++++ILF P+ GL Q V
Sbjct: 258 TTVNRNSAQQAGVGTIFDRVLSELVSKMREMEMDRTELGCLRSIILFNPDVRGLKSVQEV 317
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
+L+++ L +Y R P RF +LLL LPS+R++ +E LFF + IGD PI
Sbjct: 318 NLLREKIYAALEEYTRMSRPNDPGRFAKLLLRLPSIRSIGLKCLEHLFFFKVIGDSPIDD 377
Query: 272 LLGDM 276
L +M
Sbjct: 378 FLMEM 382
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL Q V +L+++ L +Y R P RF +LLL LPS+R++ +E LFF +
Sbjct: 310 GLKSVQEVNLLREKIYAALEEYTRMSRPNDPGRFAKLLLRLPSIRSIGLKCLEHLFFFKV 369
Query: 347 IGDIPIQRLLGDM 359
IGD PI L +M
Sbjct: 370 IGDSPIDDFLMEM 382
>gi|226432209|gb|ACO55650.1| retinoid X receptor beta [Paralichthys olivaceus]
Length = 417
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 224 CQ-AADKQLFTLVEWAKRIPHFSELQLDDQVILLRAGWNELLIASFSHRSISVKDGILLA 282
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D SE GC++A+ILF P+ GL +
Sbjct: 283 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIILFNPDAKGLSNPS 342
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 343 EVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 402
Query: 270 QRLLGDM 276
L +M
Sbjct: 403 DTFLMEM 409
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 334 DAKGLSNPSEVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 393
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 394 FKLIGDTPIDTFLMEM 409
>gi|443691595|gb|ELT93409.1| hypothetical protein CAPTEDRAFT_164614 [Capitella teleta]
Length = 540
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S +L+
Sbjct: 347 CQ-AADKQLFTLVDWAKRVPHFTELPLEDQVILLRAGWNELLIAGFSHRSTAVKDGILLA 405
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R+++ D +E GC++A++LF P+ GL
Sbjct: 406 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMNMDKTELGCLRAIVLFNPDAKGLSAIT 465
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + Y +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 466 DVEALREKVYASLEEYCKTHYPEEPGRFAKLLLRLPALRSIGLKCMEHLFFFKLIGDTPI 525
Query: 270 QRLLGDM 276
L +M
Sbjct: 526 DSFLMEM 532
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE L+++ L +Y + Y +P RF +LLL LP+LR++ +E LFF
Sbjct: 457 DAKGLSAITDVEALREKVYASLEEYCKTHYPEEPGRFAKLLLRLPALRSIGLKCMEHLFF 516
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 517 FKLIGDTPIDSFLMEM 532
>gi|355717622|gb|AES05998.1| retinoid X receptor, alpha [Mustela putorius furo]
Length = 202
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 9 CQAADKQL-FTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSITVKDGILLA 67
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 68 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 127
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 128 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 187
Query: 270 QRLLGDM 276
L +M
Sbjct: 188 DTFLMEM 194
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 119 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 178
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 179 FKLIGDTPIDTFLMEM 194
>gi|358251510|gb|AEU04704.1| retinoid X receptor beta [Lateolabrax japonicus]
Length = 444
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 105/213 (49%), Gaps = 20/213 (9%)
Query: 77 PHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHL 136
PH + I +A+K LF V W + + F L DQ++LL+ W EL +
Sbjct: 231 PHDAVTNICQTADK-------QLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASF 283
Query: 137 AQWSIPWDLSLLINCEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQLS 183
+ SI +L+ E R+ V + E+ +++ E++ + R +
Sbjct: 284 SHRSIALKDGVLLASELQRDSAHSAGVGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMQ 343
Query: 184 PDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLM 243
D +E GC++A+ LF P+ GL + VE+L+++ L Y + RY Q RF +LLL
Sbjct: 344 MDKTELGCLRAIALFNPDAKGLSNTSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLR 403
Query: 244 LPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
LP+LR++ +E LFF + IGD PI L +M
Sbjct: 404 LPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 436
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + RY Q RF +LLL LP+LR++ +E LFF
Sbjct: 361 DAKGLSNTSEVELLREKVYASLEAYCKQRYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 420
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 421 FKLIGDTPIDTFLMEM 436
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 181 CQ-AADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 239
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 240 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 299
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 300 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKRLEHLFFFKLIGDTPI 359
Query: 270 QRLLGDM 276
L +M
Sbjct: 360 DTFLMEM 366
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 291 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKRLEHLFF 350
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 351 FKLIGDTPIDTFLMEM 366
>gi|409194686|gb|AFV31633.1| retinoic X receptor gamma, partial [Acanthopagrus schlegelii]
Length = 453
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S+ +L+
Sbjct: 260 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLA 318
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++++ + + D +E GC++A++LF P+ GL +
Sbjct: 319 TGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPP 378
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 379 EVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 438
Query: 270 QRLLGDM 276
L +M
Sbjct: 439 DTFLMEM 445
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 370 DAKGLSNPPEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 429
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 430 FKLIGDTPIDTFLMEM 445
>gi|432856175|ref|XP_004068390.1| PREDICTED: retinoic acid receptor RXR-gamma-B [Oryzias latipes]
Length = 455
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S+ +L+
Sbjct: 262 CQ-AADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLA 320
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++++ + + D +E GC++A++LF P+ GL +
Sbjct: 321 TGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPS 380
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 381 EVEALREKVYASLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 440
Query: 270 QRLLGDM 276
L +M
Sbjct: 441 DTFLMEM 447
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 372 DAKGLSNPSEVEALREKVYASLEAYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 431
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 432 FKLIGDTPIDTFLMEM 447
>gi|426363508|ref|XP_004048881.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Gorilla gorilla
gorilla]
Length = 365
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 172 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 230
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 231 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 290
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 291 EVETLREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 350
Query: 270 QRLLGDM 276
L +M
Sbjct: 351 DTFLMEM 357
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 282 DSKGLSNPAEVETLREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 341
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 342 FKLIGDTPIDTFLMEM 357
>gi|7766906|pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 45 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASASHRSIAVKDGILLA 103
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 104 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 163
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 164 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 223
Query: 270 QRLLGDM 276
L +M
Sbjct: 224 DTFLMEM 230
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 155 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 214
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 215 FKLIGDTPIDTFLMEM 230
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 588 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 646
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 647 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPG 706
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 707 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 766
Query: 270 QRLLGDM 276
L +M
Sbjct: 767 DTFLMEM 773
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 698 DSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 757
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 758 FKLIGDTPIDTFLMEM 773
>gi|397503782|ref|XP_003822498.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Pan paniscus]
gi|402896147|ref|XP_003911168.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Papio anubis]
gi|410043384|ref|XP_520345.4| PREDICTED: retinoic acid receptor RXR-alpha [Pan troglodytes]
gi|193785958|dbj|BAG54745.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 172 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 230
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 231 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 290
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 291 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 350
Query: 270 QRLLGDM 276
L +M
Sbjct: 351 DTFLMEM 357
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 282 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 341
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 342 FKLIGDTPIDTFLMEM 357
>gi|148362145|gb|ABQ59669.1| RXRB [Salmo salar]
Length = 428
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 16/201 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L+ DQ++LL+ W EL + + SI +L+
Sbjct: 221 CQ-AADKQLFTLVEWAKRVPHFSELAMDDQVILLRAGWNELLIASFSHRSISVKDGILLA 279
Query: 151 CEKARERLPPDDVRV----------NNEI-----KLIQEILARFRQLSPDGSECGCMKAV 195
R V N E+ +++ E++++ R + D +E GC++A+
Sbjct: 280 TGLHVHRNSAHSAGVGVIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAI 339
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
ILF P+ GL + VE+L+++ L Y + RY Q RF +LLL LP+LR++ +
Sbjct: 340 ILFNPDAKGLSSSSEVELLREKVYASLESYCKHRYPDQQGRFAKLLLRLPALRSIGLKCL 399
Query: 256 ERLFFKETIGDIPIQRLLGDM 276
E LFF + IGD PI L +M
Sbjct: 400 EHLFFFKLIGDTPIDTFLMEM 420
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + RY Q RF +LLL LP+LR++ +E LFF
Sbjct: 345 DAKGLSSSSEVELLREKVYASLESYCKHRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 404
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 405 FKLIGDTPIDTFLMEM 420
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 172 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 230
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 231 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 290
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 291 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 350
Query: 270 QRLLGDM 276
L +M
Sbjct: 351 DTFLMEM 357
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 282 DSKGLSNPAEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 341
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 342 FKLIGDTPIDTFLMEM 357
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 172 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 230
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 231 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPG 290
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 291 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 350
Query: 270 QRLLGDM 276
L +M
Sbjct: 351 DTFLMEM 357
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 282 DSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 341
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 342 FKLIGDTPIDTFLMEM 357
>gi|198285543|gb|ACH85310.1| retinoid x receptor beta a [Salmo salar]
Length = 373
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 20/215 (9%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
PH + I +A+K LF V W + + F L DQ++LL+ W EL +
Sbjct: 158 SSPHDAVTNICQTADK-------QLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIA 210
Query: 135 HLAQWSIPWDLSLLINCEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQ 181
+ SI +L+ E R+ V + E+ +++ E++++ R
Sbjct: 211 SFSHRSIAVKDGVLLANELHRDNAHSAGVAAIFDRESVQSAEVGAIFDRVLTELVSKMRD 270
Query: 182 LSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLL 241
+ D +E GC++A++LF P+ GL + VE+L+++ L Y + +Y Q RF +LL
Sbjct: 271 MQMDKTELGCLRAIVLFNPDAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLL 330
Query: 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L LP+LR++ +E LFF + IGD PI L +M
Sbjct: 331 LRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 365
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 290 DAKGLSNTGEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 349
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 350 FKLIGDTPIDTFLMEM 365
>gi|66472508|ref|NP_001018458.1| nuclear receptor subfamily 2 group C member 1 [Danio rerio]
gi|63102167|gb|AAH95365.1| Nuclear receptor subfamily 2, group C, member 1 [Danio rerio]
Length = 600
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS----IPWDLSLL 148
E+ +RLLF+++ W R + FQ L + + L++ W ELF L LAQ S + L+ +
Sbjct: 392 ESASRLLFLSMHWARSIPAFQALGSENGITLMKACWNELFALGLAQCSHIMNVETILTAI 451
Query: 149 IN---CEKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
IN E+L P+ V+ V I +QE ++SPD E +KAV+LF+P+
Sbjct: 452 INHLQTSLDEEKLSPERVKQVMEHIWRMQEFCNSMSRMSPDAYEYAYLKAVVLFSPDHSA 511
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ +E Q++A L DYV Y R +LL+ LP+LR + + E LFF I
Sbjct: 512 VDGTLQIERFQEKAYMELQDYVSKVYPEDTYRLSKLLVRLPALRLMSAAVTEELFFAGLI 571
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 572 GNVQIDSIIPYILKMEST 589
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 353
+E Q++A L DYV Y R +LL+ LP+LR + + E LFF IG++ I
Sbjct: 518 IERFQEKAYMELQDYVSKVYPEDTYRLSKLLVRLPALRLMSAAVTEELFFAGLIGNVQID 577
Query: 354 RLLGDMYTMEKS 365
++ + ME +
Sbjct: 578 SIIPYILKMEST 589
>gi|441623802|ref|XP_003279685.2| PREDICTED: retinoic acid receptor RXR-alpha [Nomascus leucogenys]
Length = 418
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 225 CQAAD-KQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 283
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 284 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 343
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 344 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 403
Query: 270 QRLLGDM 276
L +M
Sbjct: 404 DTFLMEM 410
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 335 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 394
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 395 FKLIGDTPIDTFLMEM 410
>gi|148725669|emb|CAN87977.1| retinoid x receptor, alpha b [Danio rerio]
Length = 202
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 9 CQAADKQL-FTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 67
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 68 TGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPS 127
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 128 EVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 187
Query: 270 QRLLGDM 276
L +M
Sbjct: 188 DTFLMEM 194
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 119 DSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 178
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 179 FKLIGDTPIDTFLMEM 194
>gi|146186456|gb|ABQ09280.1| retinoid X receptor alpha 1 [Oryzias latipes]
Length = 250
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 64 CQ-AADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 122
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 123 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPG 182
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 183 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 242
Query: 270 QRLLGDM 276
L +M
Sbjct: 243 DTFLMEM 249
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 174 DSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 233
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 234 FKLIGDTPIDTFLMEM 249
>gi|197941308|gb|ACH78358.1| retinoid X receptor gamma [Sebastiscus marmoratus]
Length = 451
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ+ LL+ W EL + + S+ +L+
Sbjct: 258 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVFLLRAGWNELLIASFSHRSVTVKDGILLA 316
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++++ + + D +E GC++A++LF P+ GL +
Sbjct: 317 TGLHVHRNSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPP 376
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 377 EVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 436
Query: 270 QRLLGDM 276
L +M
Sbjct: 437 DTFLMEM 443
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 368 DAKGLSNPPEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 428 FKLIGDTPIDTFLMEM 443
>gi|66864094|dbj|BAD99298.1| ultraspiracle [Leptinotarsa decemlineata]
Length = 384
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +LL + V W + + F +L DQ+LLL+ W EL + + S+ +++
Sbjct: 192 CQATNKQLLQL-VEWAKLIPHFTSLPVSDQVLLLRAGWNELLIASFSHRSMQTQEGIILA 250
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ V V N +++ E++ + +++ D +E GC++A+IL+ P+ GL Q
Sbjct: 251 TGLTINKSTAQAVGVGNIYDRVLSELVNKMKEMRMDKTELGCLRAIILYNPDVRGLQSTQ 310
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L +Y R + +P RF +LLL LP+LR++ +E LFF IGD+ I
Sbjct: 311 EVEILREKIYENLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDVTI 370
Query: 270 QRLLGDM 276
+ +M
Sbjct: 371 DTFITEM 377
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL Q VE+L+++ L +Y R + +P RF +LLL LP+LR++ +E LFF
Sbjct: 305 GLQSTQEVEILREKIYENLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFRL 364
Query: 347 IGDIPIQRLLGDM 359
IGD+ I + +M
Sbjct: 365 IGDVTIDTFITEM 377
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 198 CQ-AADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 256
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 257 TGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPS 316
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 317 EVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 376
Query: 270 QRLLGDM 276
L +M
Sbjct: 377 DTFLMEM 383
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 308 DSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 367
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 368 FKLIGDTPIDTFLMEM 383
>gi|395741153|ref|XP_002820405.2| PREDICTED: retinoic acid receptor RXR-alpha-like [Pongo abelii]
Length = 318
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 125 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSNRSIAVKDGILLA 183
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 184 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 243
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 244 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 303
Query: 270 QRLLGDM 276
L +M
Sbjct: 304 DTFLMEM 310
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 235 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 294
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 295 FKLIGDTPIDTFLMEM 310
>gi|156387775|ref|XP_001634378.1| predicted protein [Nematostella vectensis]
gi|156221460|gb|EDO42315.1| predicted protein [Nematostella vectensis]
Length = 351
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 2/188 (1%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E A +LF V W R L F L DQ+ LL+ +W +LFLL ++ + + +
Sbjct: 142 ELAANVLFAVVDWARKLTTFNNLMDSDQITLLKMAWTDLFLLEASRSPLQLYVQQMYATI 201
Query: 153 KARERLPPDDVRVN--NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP 210
A+ + +V V +L QE R R L D +E +K ++LF + + +
Sbjct: 202 NAQTKQLSMEVIVKRMEYARLFQEQAERIRNLGMDMTEHFHLKCIVLFRADGSLINQPRQ 261
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
VE+LQD +Q L Y+R +Y QPTRFG+LLLML SLR V + IE+LFF + + +
Sbjct: 262 VEVLQDTSQSSLEQYIRSQYPSQPTRFGKLLLMLSSLRKVESTVIEQLFFADVLRGASMG 321
Query: 271 RLLGDMYT 278
+L M T
Sbjct: 322 EVLKKMLT 329
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 283 YETPGLVDAQP--VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 340
+ G + QP VE+LQD +Q L Y+R +Y QPTRFG+LLLML SLR V + IE+
Sbjct: 249 FRADGSLINQPRQVEVLQDTSQSSLEQYIRSQYPSQPTRFGKLLLMLSSLRKVESTVIEQ 308
Query: 341 LFFKETIGDIPIQRLLGDMYT 361
LFF + + + +L M T
Sbjct: 309 LFFADVLRGASMGEVLKKMLT 329
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 252 CQ-AADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIVVKDGILLA 310
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ G+
Sbjct: 311 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGVSAVS 370
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + Y +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 371 EVEQLREKVYASLEEYCKMHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 430
Query: 270 QRLLGDM 276
L +M
Sbjct: 431 DTFLLEM 437
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ G+ VE L+++ L +Y + Y +P RF +LLL LP+LR++ +E LFF
Sbjct: 362 DAKGVSAVSEVEQLREKVYASLEEYCKMHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 421
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 422 FKLIGDTPIDTFLLEM 437
>gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 451
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L+ DQ++LL+ W EL + + SI +L+
Sbjct: 258 CQAAD-KQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGILLA 316
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 317 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 376
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 377 DVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 436
Query: 270 QRLLGDM 276
L +M
Sbjct: 437 DTFLMEM 443
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 368 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 428 FKLIGDTPIDTFLMEM 443
>gi|215539467|gb|AAI69986.1| Rxrb-a protein [Xenopus laevis]
Length = 445
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L+ DQ++LL+ W EL + + SI +L+
Sbjct: 252 CQ-AADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGILLA 310
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 311 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 370
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 371 DVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 430
Query: 270 QRLLGDM 276
L +M
Sbjct: 431 DTFLMEM 437
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 362 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 421
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 422 FKLIGDTPIDTFLMEM 437
>gi|348504636|ref|XP_003439867.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 2
[Oreochromis niloticus]
Length = 407
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S+ +L+
Sbjct: 214 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLA 272
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++++ + + D +E GC++A++LF P+ GL +
Sbjct: 273 TGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPS 332
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 333 EVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 392
Query: 270 QRLLGDM 276
L +M
Sbjct: 393 DTFLMEM 399
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 324 DAKGLSNPSEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 383
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 384 FKLIGDTPIDTFLMEM 399
>gi|146332014|gb|ABQ22513.1| retinoic acid receptor RXR-alpha-like protein [Callithrix jacchus]
Length = 187
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L DQ++LL+ W EL + + SI +L+ R
Sbjct: 1 LFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRN 60
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V +++ E++++ R + D +E GC++A++LF P++ GL + VE L+++
Sbjct: 61 SAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREK 120
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 121 VYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 179
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 104 DSKGLSNPAEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 163
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 164 FKLIGDTPIDTFLMEM 179
>gi|83318203|gb|AAI08461.1| Rxrb-a protein [Xenopus laevis]
Length = 458
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L+ DQ++LL+ W EL + + SI +L+
Sbjct: 265 CQAAD-KQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGILLA 323
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 324 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 383
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 384 DVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 443
Query: 270 QRLLGDM 276
L +M
Sbjct: 444 DTFLMEM 450
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 375 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 435 FKLIGDTPIDTFLMEM 450
>gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 458
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L+ DQ++LL+ W EL + + SI +L+
Sbjct: 265 CQAAD-KQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGILLA 323
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 324 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 383
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 384 DVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 443
Query: 270 QRLLGDM 276
L +M
Sbjct: 444 DTFLMEM 450
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 375 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 435 FKLIGDTPIDTFLMEM 450
>gi|189095956|pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095957|pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095958|pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095959|pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 1/192 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
+ R L V W + + F +L DQ++LL+ W EL + + SI S+L+
Sbjct: 65 KAADRQLVTLVEWAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDVKDSILLASG 124
Query: 153 KARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R V +++ E++++ R + D +E GC++AV+LF P+ D+ +
Sbjct: 125 LHVHRHSAHQAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAVVLFNPDVKNPSDSAHI 184
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
E L+++ L Y R +Y QP RF +LLL LP+LR++ +E LFF + IGD PI +
Sbjct: 185 ESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDK 244
Query: 272 LLGDMYTMEKSY 283
L +M +
Sbjct: 245 FLMNMLETTSDF 256
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
D+ +E L+++ L Y R +Y QP RF +LLL LP+LR++ +E LFF + IGD
Sbjct: 180 DSAHIESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 239
Query: 350 IPIQRLLGDMYTMEKSY 366
PI + L +M +
Sbjct: 240 TPIDKFLMNMLETTSDF 256
>gi|383848789|ref|XP_003700030.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Megachile
rotundata]
Length = 427
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 1/185 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
T + LF V W + + F +L DQ+LLL+ W EL + + SI +++
Sbjct: 236 NATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG 295
Query: 153 KARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R V +++ E++++ R++ D +E GC++++ILF PE GL Q V
Sbjct: 296 ITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEV 355
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
+L+++ L Y R + P RF +LLL LP++R++ +E LFF + IGD+PI
Sbjct: 356 TLLREKIYAALEGYCRVAWPDDPGRFAKLLLRLPAIRSIGLKCLEHLFFFKMIGDVPIDD 415
Query: 272 LLGDM 276
L +M
Sbjct: 416 FLVEM 420
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q V +L+++ L Y R + P RF +LLL LP++R++ +E LFF
Sbjct: 345 EVRGLKSIQEVTLLREKIYAALEGYCRVAWPDDPGRFAKLLLRLPAIRSIGLKCLEHLFF 404
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD+PI L +M
Sbjct: 405 FKMIGDVPIDDFLVEM 420
>gi|118788495|ref|XP_316782.3| AGAP000819-PA [Anopheles gambiae str. PEST]
gi|116126135|gb|EAA12047.4| AGAP000819-PA [Anopheles gambiae str. PEST]
Length = 436
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 118/243 (48%), Gaps = 37/243 (15%)
Query: 66 PSMFL-ATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLL 124
P++F A PP HP L++ + +E+ A+LLFM V +++ L PF L DQL+L
Sbjct: 197 PALFAGAGGMPPSHP-----LVAVDAIRESAAQLLFMNVNFLKSLTPFTQLPMADQLVLF 251
Query: 125 QESWKELFLLHLAQWSIPWDLS-LLINCEKAR----ERLPPDDVRVNNEIKLIQEILARF 179
+ESW+E F+L +AQ+ P + S LLI E E D V E+++ QEILA+
Sbjct: 252 EESWREFFILAVAQYLAPINFSQLLIAYEYLNNNRGETGTVSDFLVK-EVEIFQEILAQL 310
Query: 180 RQLSPDGSECGCMKAVILFTPE-------------------------TPGLVDAQPVEML 214
L D +E ++A++L+ E + + V L
Sbjct: 311 AALRVDPNEYVYLRAIVLYKSEFDAETSISSVSSDGSDVTTASSAGSAKSIGEIATVRAL 370
Query: 215 QDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLG 274
++ A+ L Y+ R+ LL +LP+LR V TIE LFF+ IG P+ +LL
Sbjct: 371 EESAKEALASYISTCRPGPSNRYRTLLQLLPALRNVSSYTIEELFFRRNIGPAPLLKLLL 430
Query: 275 DMY 277
D Y
Sbjct: 431 DFY 433
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 353
V L++ A+ L Y+ R+ LL +LP+LR V TIE LFF+ IG P+
Sbjct: 367 VRALEESAKEALASYISTCRPGPSNRYRTLLQLLPALRNVSSYTIEELFFRRNIGPAPLL 426
Query: 354 RLLGDMY 360
+LL D Y
Sbjct: 427 KLLLDFY 433
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 186 CQ-AADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 244
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 245 TGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPS 304
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 305 EVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 364
Query: 270 QRLLGDM 276
L +M
Sbjct: 365 DTFLMEM 371
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 296 DSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 355
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 356 FKLIGDTPIDTFLMEM 371
>gi|323461807|dbj|BAJ76722.1| retinoid X receptor isoform 1 [Reishia clavigera]
Length = 442
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S +L+
Sbjct: 248 CQ-AADKQLFTLVDWAKRIPHFVELPLEDQVILLRAGWNELLIGGFSHRSTQVTDGILLA 306
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ GL Q
Sbjct: 307 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQSVQ 366
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IG PI
Sbjct: 367 EVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGQTPI 426
Query: 270 QRLLGDM 276
L +M
Sbjct: 427 DTFLMEM 433
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 358 DAKGLQSVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 417
Query: 344 KETIGDIPIQRLLGDM 359
+ IG PI L +M
Sbjct: 418 FKLIGQTPIDTFLMEM 433
>gi|51873224|gb|AAU12572.1| retinoid X receptor [Reishia clavigera]
Length = 431
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S +L+
Sbjct: 237 CQ-AADKQLFTLVDWAKRIPHFVELPLEDQVILLRAGWNELLIGGFSHRSTQVTDGILLA 295
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ GL Q
Sbjct: 296 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQSVQ 355
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IG PI
Sbjct: 356 EVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGQTPI 415
Query: 270 QRLLGDM 276
L +M
Sbjct: 416 DTFLMEM 422
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 347 DAKGLQSVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 406
Query: 344 KETIGDIPIQRLLGDM 359
+ IG PI L +M
Sbjct: 407 FKLIGQTPIDTFLMEM 422
>gi|148230344|ref|NP_001080936.1| retinoid X receptor, beta [Xenopus laevis]
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis]
Length = 412
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L+ DQ++LL+ W EL + + SI +L+
Sbjct: 219 CQ-AADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGILLA 277
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 278 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 337
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 338 DVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 397
Query: 270 QRLLGDM 276
L +M
Sbjct: 398 DTFLMEM 404
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 329 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 388
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 389 FKLIGDTPIDTFLMEM 404
>gi|260808486|ref|XP_002599038.1| hypothetical protein BRAFLDRAFT_245659 [Branchiostoma floridae]
gi|229284314|gb|EEN55050.1| hypothetical protein BRAFLDRAFT_245659 [Branchiostoma floridae]
Length = 198
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 13/199 (6%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L + + ++L + +V+ L F L D+ LLL W +LF + LAQ + +
Sbjct: 1 LRNPSSAHQQACQVLLRTLTFVKNLPTFGDLCPHDRALLLTSGWSDLFTVGLAQSRVQF- 59
Query: 145 LSLLINCEKA-------RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVIL 197
N E A R R D + E+ IQ + R + L D E + A +L
Sbjct: 60 -----NTEPAGGDRIFVRLRASVDGIPTETEVAKIQNFVERCQVLDLDMKEHSYLMAALL 114
Query: 198 FTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
F P+ PGL D + VE+LQ+ A L +Y RY QP RF R+LL LP+LR+++ +
Sbjct: 115 FNPDVPGLADGRQVEILQNSAHQSLNEYTTARYPLQPLRFARILLGLPALRSIKPKIVTE 174
Query: 258 LFFKETIGDIPIQRLLGDM 276
LFF+ IG I ++ +L DM
Sbjct: 175 LFFRPLIGAIDMEVILTDM 193
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ PGL D + VE+LQ+ A L +Y RY QP RF R+LL LP+LR+++ + LFF
Sbjct: 118 DVPGLADGRQVEILQNSAHQSLNEYTTARYPLQPLRFARILLGLPALRSIKPKIVTELFF 177
Query: 344 KETIGDIPIQRLLGDM 359
+ IG I ++ +L DM
Sbjct: 178 RPLIGAIDMEVILTDM 193
>gi|323461809|dbj|BAJ76723.1| retinoid X receptor isoform 2 [Reishia clavigera]
Length = 447
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S +L+
Sbjct: 253 CQ-AADKQLFTLVDWAKRIPHFVELPLEDQVILLRAGWNELLIGGFSHRSTQVTDGILLA 311
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ GL Q
Sbjct: 312 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGLQSVQ 371
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IG PI
Sbjct: 372 EVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGQTPI 431
Query: 270 QRLLGDM 276
L +M
Sbjct: 432 DTFLMEM 438
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 363 DAKGLQSVQEVEQLREKVYASLEEYCKQRYPDEPGRFAKLLLRLPALRSIGLKCLEHLFF 422
Query: 344 KETIGDIPIQRLLGDM 359
+ IG PI L +M
Sbjct: 423 FKLIGQTPIDTFLMEM 438
>gi|27819113|gb|AAO22211.1| retinoid X receptor alpha [Carassius auratus]
Length = 297
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 104 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 162
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 163 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPG 222
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 223 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 282
Query: 270 QRLLGDM 276
L +M
Sbjct: 283 DTFLMEM 289
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 214 DSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 273
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 274 FKLIGDTPIDTFLMEM 289
>gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE RecName: Full=Retinoic acid receptor RXR-beta-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-A;
AltName: Full=Retinoid X receptor beta-A
gi|32451843|gb|AAH54649.1| Rxrba protein [Danio rerio]
Length = 471
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F LS DQ++LL+ W EL + + SI +L+
Sbjct: 264 CQ-AADKQLFTLVEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLA 322
Query: 151 CEKARERLPPDDVRV----------NNEI-----KLIQEILARFRQLSPDGSECGCMKAV 195
R V N E+ +++ E++++ R + D +E GC++A+
Sbjct: 323 TGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAI 382
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
ILF P+ GL VE+L+++ L Y + RY Q RF +LLL LP+LR++ +
Sbjct: 383 ILFNPDAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCL 442
Query: 256 ERLFFKETIGDIPIQRLLGDM 276
E LFF + IGD PI L +M
Sbjct: 443 EHLFFFKLIGDTPIDTFLMEM 463
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE+L+++ L Y + RY Q RF +LLL LP+LR++ +E LFF
Sbjct: 388 DAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 447
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 448 FKLIGDTPIDTFLMEM 463
>gi|340025441|gb|AEK27051.1| retinoid X receptor gamma [Lateolabrax japonicus]
Length = 453
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S+ +L+
Sbjct: 260 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLA 318
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++++ + + D +E GC++A++LF P+ GL +
Sbjct: 319 TGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPP 378
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +L+ LP+LR++ +E LFF + IGD PI
Sbjct: 379 EVEALREKVYASLESYTKQKYPDQPGRFAKLVFRLPALRSIGLKCLEHLFFFKLIGDTPI 438
Query: 270 QRLLGDM 276
L +M
Sbjct: 439 DTFLMEM 445
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +L+ LP+LR++ +E LFF
Sbjct: 370 DAKGLSNPPEVEALREKVYASLESYTKQKYPDQPGRFAKLVFRLPALRSIGLKCLEHLFF 429
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 430 FKLIGDTPIDTFLMEM 445
>gi|94733756|emb|CAK11469.1| retinoid x receptor, beta [Danio rerio]
Length = 487
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F LS DQ++LL+ W EL + + SI +L+
Sbjct: 280 CQ-AADKQLFTLVEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLA 338
Query: 151 CEKARERLPPDDVRV----------NNEI-----KLIQEILARFRQLSPDGSECGCMKAV 195
R V N E+ +++ E++++ R + D +E GC++A+
Sbjct: 339 TGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAI 398
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
ILF P+ GL VE+L+++ L Y + RY Q RF +LLL LP+LR++ +
Sbjct: 399 ILFNPDAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCL 458
Query: 256 ERLFFKETIGDIPIQRLLGDM 276
E LFF + IGD PI L +M
Sbjct: 459 EHLFFFKLIGDTPIDTFLMEM 479
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE+L+++ L Y + RY Q RF +LLL LP+LR++ +E LFF
Sbjct: 404 DAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 463
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 464 FKLIGDTPIDTFLMEM 479
>gi|332253632|ref|XP_003275940.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nomascus
leucogenys]
Length = 366
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 107/190 (56%), Gaps = 10/190 (5%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK------ARE 156
V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+ A E
Sbjct: 176 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 235
Query: 157 RLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQD 216
R V ++++ QE + + +L D +E GC+KA+ LFTP+ GL D VE LQ+
Sbjct: 236 RA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQE 291
Query: 217 QAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
+AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G PI+ L+ DM
Sbjct: 292 KAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDM 351
Query: 277 YTMEKSYETP 286
++ P
Sbjct: 352 LLSGSTFNWP 361
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 276 DACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFF 335
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 336 MRLVGKTPIETLIRDM 351
>gi|1036801|gb|AAA93013.1| svp, partial [Schistocerca americana]
Length = 121
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%)
Query: 171 LIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRY 230
+ QE + + + L D +E C+KA++LFT + GL D +E LQ+++QC L +Y R +Y
Sbjct: 1 IFQEQVEKLKALHVDSAEYSCLKAIVLFTTDACGLSDVAHIEGLQEKSQCALEEYCRTQY 60
Query: 231 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
QPTRFG+LLL LPSLR V IE+LFF +G PI+ L+ DM S+ P
Sbjct: 61 PNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGSSFSWP 116
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 51/81 (62%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 34 GLSDVAHIEGLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRL 93
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 94 VGKTPIETLIRDMLLSGSSFS 114
>gi|24308520|ref|NP_571350.1| retinoic acid receptor RXR-beta-A [Danio rerio]
gi|1046299|gb|AAC59722.1| retinoid X receptor epsilon [Danio rerio]
gi|94733758|emb|CAK11471.1| retinoid x receptor, beta [Danio rerio]
gi|1583307|prf||2120366B retinoid X receptor:ISOTYPE=epsilon
Length = 438
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F LS DQ++LL+ W EL + + SI +L+
Sbjct: 231 CQ-AADKQLFTLVEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLA 289
Query: 151 CEKARERLPPDDVRV----------NNEI-----KLIQEILARFRQLSPDGSECGCMKAV 195
R V N E+ +++ E++++ R + D +E GC++A+
Sbjct: 290 TGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAI 349
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
ILF P+ GL VE+L+++ L Y + RY Q RF +LLL LP+LR++ +
Sbjct: 350 ILFNPDAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCL 409
Query: 256 ERLFFKETIGDIPIQRLLGDM 276
E LFF + IGD PI L +M
Sbjct: 410 EHLFFFKLIGDTPIDTFLMEM 430
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE+L+++ L Y + RY Q RF +LLL LP+LR++ +E LFF
Sbjct: 355 DAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 414
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 415 FKLIGDTPIDTFLMEM 430
>gi|3098336|gb|AAC15589.1| retinoid X receptor [Amblyomma americanum]
Length = 414
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 96/175 (54%), Gaps = 1/175 (0%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
V+W R + F+ L D+ LL+ W EL + + S+ +++ +R
Sbjct: 233 VQWARRIPHFEELPIEDRTALLKAGWNELLIAAFSHRSVAVRDGIVLATGLVVQRHSAHG 292
Query: 163 VRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
V + +++ E++A+ R + D +E GC++AV+LF P+ GL +A VE L+++
Sbjct: 293 AGVGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLRNATRVEALREKVYAA 352
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L ++ R + QP RFG+LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 353 LEEHCRRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDSFLLNM 407
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL +A VE L+++ L ++ R + QP RFG+LLL LP+LR++ +E LFF
Sbjct: 332 DAKGLRNATRVEALREKVYAALEEHCRRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFF 391
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 392 FKLIGDTPIDSFLLNM 407
>gi|156387699|ref|XP_001634340.1| predicted protein [Nematostella vectensis]
gi|156221422|gb|EDO42277.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 105/198 (53%), Gaps = 10/198 (5%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E E ARLL AV W + + + L DQ +LL+ W ELF L+ AQ P+ +S
Sbjct: 161 ENTPELAARLLVSAVEWAKNIPFYSDLPLPDQAVLLRSCWSELFTLNAAQHCSPFHISPT 220
Query: 149 INCEK---ARERLPPDDVRV-------NNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
+ A + RV NN +KL +E + + + + D +E C+KA++LF
Sbjct: 221 LTSNSSGFAGNGGGYLNTRVMSAFDCQNNNMKLFEEQVEKLKNMHIDSAEFACLKAIVLF 280
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
P++ GL + VE LQD+ Q L DY+R +Y Q TRFG+LLL LP+LR +R ++E L
Sbjct: 281 NPDSQGLSEPAQVENLQDRTQSALEDYIRTQYPNQTTRFGKLLLRLPALRLLRPVSVENL 340
Query: 259 FFKETIGDIPIQRLLGDM 276
FF + LL DM
Sbjct: 341 FFSRLSMGNTVDSLLNDM 358
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE LQD+ Q L DY+R +Y Q TRFG+LLL LP+LR +R ++E LFF
Sbjct: 283 DSQGLSEPAQVENLQDRTQSALEDYIRTQYPNQTTRFGKLLLRLPALRLLRPVSVENLFF 342
Query: 344 KETIGDIPIQRLLGDM 359
+ LL DM
Sbjct: 343 SRLSMGNTVDSLLNDM 358
>gi|409758|gb|AAA37532.1| transcription factor [Mus musculus]
Length = 389
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 110/200 (55%), Gaps = 11/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E AR + V W R F L DQ+ LL+ SW ELF+L+ AQ ++ + L+
Sbjct: 191 ELAARAV-STVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAAVAVHTAPLLAAA 249
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 250 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFTPDACGLS 305
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 306 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 365
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 366 TPIETLIRDMLLSGSTFNWP 385
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 303 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 362
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 363 VGKTPIETLIRDM 375
>gi|158962474|dbj|BAF91724.1| retinoid X receptor [Ornithodoros moubata]
Length = 453
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V W + + F L D+++LL+ W EL + + S+ +++
Sbjct: 261 CQ-AADRQLHQLVEWAKHIPHFTELPLEDRMVLLKAGWNELLIAAFSHRSMXVKDGIVLA 319
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+R V +++ E++A+ R+L D +E GC++A++LF PE GL +
Sbjct: 320 TGLVVQRHSAHSAGVGAIFDRVLTELVAKMRELRMDRTELGCLRAIVLFNPEARGLRCSA 379
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L D+ R +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 380 QVEALRERVYAALEDHCRQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 439
Query: 270 QRLLGDM 276
L M
Sbjct: 440 DNFLLSM 446
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL + VE L+++ L D+ R +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 371 EARGLRCSAQVEALRERVYAALEDHCRQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 430
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L M
Sbjct: 431 FKLIGDTPIDNFLLSM 446
>gi|307185619|gb|EFN71557.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 373
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/306 (34%), Positives = 139/306 (45%), Gaps = 42/306 (13%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPP 60
VQHERGPR I + L P ++ P+ + +P + P P
Sbjct: 78 VQHERGPRNSTIR----RQMALYFKEPEMIASIVAPSAALDLALPKAPTESRVSMPGPSP 133
Query: 61 -PSHHHP--SMFLATHQPPPHPGLLQIL-----MSAEKCQETTARLLFMAVRWVRCLAPF 112
PS HP LA + PP+ L + ++AE E ARLLF+ V W R LA
Sbjct: 134 HPSLTHPVYCNALAMSKMPPNIANLHAMPIIPPIAAESMCEQAARLLFLNVHWARDLAAG 193
Query: 113 QTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLI 172
L DQL LL+ SW+ELFLL AQ D + L LPP + + E+
Sbjct: 194 TNLVLEDQLTLLECSWRELFLLAAAQMLPTLDPTPL---------LPPQGIGLAIEVTRF 244
Query: 173 QEILARFRQLSPDGSECGCMKAVILFTPETPG--------------------LVDAQPVE 212
+E LA F + D E C++A++LF L D V
Sbjct: 245 RETLAGFNAMHLDQHEFACIRAIVLFKAGLDSESVSSNRSTSSSNSPGPGSRLRDPASVA 304
Query: 213 MLQDQAQCILGDYVRGRYSRQPT-RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
L+D AQ LG + T RFG+LLL+LPSLR+V IE LFF+ TIG IPI+R
Sbjct: 305 RLRDSAQLALGQRLNSASLGAGTLRFGKLLLLLPSLRSVSTHAIEELFFRRTIGIIPIER 364
Query: 272 LLGDMY 277
++ DMY
Sbjct: 365 IICDMY 370
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 288 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPT-RFGRLLLMLPSLRAVRQSTIERLFFKET 346
L D V L+D AQ LG + T RFG+LLL+LPSLR+V IE LFF+ T
Sbjct: 297 LRDPASVARLRDSAQLALGQRLNSASLGAGTLRFGKLLLLLPSLRSVSTHAIEELFFRRT 356
Query: 347 IGDIPIQRLLGDMY 360
IG IPI+R++ DMY
Sbjct: 357 IGIIPIERIICDMY 370
>gi|157133704|ref|XP_001662973.1| tailless (tll) [Aedes aegypti]
gi|108881478|gb|EAT45703.1| AAEL003020-PA [Aedes aegypti]
Length = 397
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 140/307 (45%), Gaps = 47/307 (15%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSP-- 58
VQHERGPR + + P ++PP P + P GL
Sbjct: 105 VQHERGPRSSTLRK--QMALFIAKDTPLRHELMIPP--------PIPMGQPTMGLDLSMQ 154
Query: 59 -----PPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQ 113
P S HP++F A P P L++A+ +E+ A+LLFM V +++ L PF
Sbjct: 155 RNAFLSPQSMVHPTLFPAMQSPHP-------LIAADAIRESAAQLLFMNVNFLKNLVPFT 207
Query: 114 TLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS-LLINCEK-ARERLPPDDVRVNNEIKL 171
L DQL+L +ESW+E F+L +AQ+ +P + + LL+ E R P + E+ +
Sbjct: 208 KLPLDDQLILFEESWREFFILAVAQYLLPINFNHLLVAYEYLNNNRGEPIPECIIREVDI 267
Query: 172 IQEILARFRQLSPDGSECGCMKAVILFTPE---------------------TPGLVDAQP 210
QEIL + L D +E ++AV+L+ E + + +
Sbjct: 268 FQEILTQIVALRVDTNEFVYLRAVVLYKTEFDPESSISSSSSDGSDIISSTSKSIQEIST 327
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
V L+D A+ L YVR RF LL +LP LR V TIE LFF+ IG P+
Sbjct: 328 VRALEDGAKEALAAYVRTCRPIPAERFRLLLQLLPVLRNVSTYTIEELFFRRNIGPAPLL 387
Query: 271 RLLGDMY 277
+LL D Y
Sbjct: 388 KLLLDFY 394
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 36/67 (53%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 353
V L+D A+ L YVR RF LL +LP LR V TIE LFF+ IG P+
Sbjct: 328 VRALEDGAKEALAAYVRTCRPIPAERFRLLLQLLPVLRNVSTYTIEELFFRRNIGPAPLL 387
Query: 354 RLLGDMY 360
+LL D Y
Sbjct: 388 KLLLDFY 394
>gi|84028535|gb|ABC49726.1| retinoid X receptor 3 [Petromyzon marinus]
Length = 462
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 271 CQAADKQL-FTLVEWSKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIGVSDGILLA 329
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++++ R ++ D +E GC++A +LF P+ GL
Sbjct: 330 TGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRATVLFNPDAKGLSSPC 389
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + I D PI
Sbjct: 390 DVEALREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLISDTPI 449
Query: 270 QRLLGDM 276
L +M
Sbjct: 450 DTFLMEM 456
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 381 DAKGLSSPCDVEALREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 440
Query: 344 KETIGDIPIQRLLGDM 359
+ I D PI L +M
Sbjct: 441 FKLISDTPIDTFLMEM 456
>gi|197941306|gb|ACH78357.1| retinoid X receptor alpha [Sebastiscus marmoratus]
Length = 331
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 138 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAIKDGILLA 196
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 197 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPG 256
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 257 EVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 316
Query: 270 QRLLGDM 276
L +M
Sbjct: 317 DTFLMEM 323
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 248 DSKGLSNPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 307
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 308 FKLIGDTPIDTFLMEM 323
>gi|348541129|ref|XP_003458039.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 224 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLA 282
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 283 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPS 342
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 343 EVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 402
Query: 270 QRLLGDM 276
L +M
Sbjct: 403 DTFLMEM 409
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 334 DAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 393
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 394 FKLIGDTPIDTFLMEM 409
>gi|397494017|ref|XP_003817891.1| PREDICTED: nuclear receptor subfamily 2 group F member 6, partial
[Pan paniscus]
Length = 429
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 107/200 (53%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 229 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 288
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER E + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 289 GLHAAPMAAERX----XXXXXXXXXXXEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 344
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 345 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 404
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 405 TPIETLIRDMLLSGSTFNWP 424
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 342 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 401
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 402 VGKTPIETLIRDM 414
>gi|47940249|gb|AAH72132.1| Rxrb protein [Xenopus laevis]
Length = 449
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 256 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLA 314
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 315 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 374
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 375 DVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 434
Query: 270 QRLLGDM 276
L +M
Sbjct: 435 DTFLMEM 441
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 366 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 425
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 426 FKLIGDTPIDTFLMEM 441
>gi|146147384|gb|ABQ01987.1| retinoid X receptor beta [Salmo salar]
gi|148362152|gb|ABQ59675.1| RXR [Salmo salar]
Length = 430
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L+ DQ++LL+ W EL + + SI +L+
Sbjct: 223 CQ-AADKQLFTLVEWAKRVPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGILLA 281
Query: 151 CEKARERLPPDDVRV----------NNEI-----KLIQEILARFRQLSPDGSECGCMKAV 195
R V N E+ +++ E++++ R + D +E GC++A+
Sbjct: 282 TGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAI 341
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
ILF P+ GL VE+L+++ L Y + RY Q RF +LLL LP+LR++ +
Sbjct: 342 ILFNPDAKGLSSPSEVELLREKVYASLESYCKQRYPDQQGRFAKLLLRLPALRSIGLKCL 401
Query: 256 ERLFFKETIGDIPIQRLLGDM 276
E LFF + IGD PI L +M
Sbjct: 402 EHLFFFKLIGDTPIDTFLMEM 422
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE+L+++ L Y + RY Q RF +LLL LP+LR++ +E LFF
Sbjct: 347 DAKGLSSPSEVELLREKVYASLESYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 406
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 407 FKLIGDTPIDTFLMEM 422
>gi|354487523|ref|XP_003505922.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cricetulus
griseus]
Length = 546
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 353 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 411
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 412 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 471
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 472 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 531
Query: 270 QRLLGDM 276
L +M
Sbjct: 532 DTFLMEM 538
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 463 DAKGLSNPGEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 522
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 523 FKLIGDTPIDTFLMEM 538
>gi|380800431|gb|AFE72091.1| retinoic acid receptor RXR-beta, partial [Macaca mulatta]
Length = 478
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 285 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 343
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 344 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 403
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 404 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 463
Query: 270 QRLLGDM 276
L +M
Sbjct: 464 DTFLMEM 470
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 395 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 454
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 455 FKLIGDTPIDTFLMEM 470
>gi|538261|gb|AAA21474.1| TR4 orphan receptor [Homo sapiens]
Length = 615
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 100/198 (50%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 407 ESASRLLFLSMHRARSIPAFQGLGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 466
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE DG E +KA++LF+P+ PG
Sbjct: 467 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMANWDIDGYEYAYLKAIVLFSPDHPG 526
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 527 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 586
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 587 GNVSIDSIIPYILKMETA 604
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 525 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 584
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 585 LIGNVSIDSIIPYILKMETA 604
>gi|387184|gb|AAA37772.1| MHC class I regulatory element binding protein (H-2RIIBP), partial
[Mus musculus]
Length = 446
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 253 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 311
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 312 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 371
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 372 EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 431
Query: 270 QRLLGDM 276
L +M
Sbjct: 432 DTFLMEM 438
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 363 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 422
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 423 FKLIGDTPIDTFLMEM 438
>gi|189442705|gb|AAI67577.1| rxrb protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 219 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLA 277
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 278 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 337
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 338 DVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 397
Query: 270 QRLLGDM 276
L +M
Sbjct: 398 DTFLMEM 404
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 329 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 388
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 389 FKLIGDTPIDTFLMEM 404
>gi|395533940|ref|XP_003769007.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor RXR-beta
[Sarcophilus harrisii]
Length = 524
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 331 CQAAD-KQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSISVRDGILLA 389
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 390 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 449
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 450 EVEILREKVYASLESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 509
Query: 270 QRLLGDM 276
L +M
Sbjct: 510 DTFLMEM 516
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 441 DAKGLSNPGEVEILREKVYASLESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 500
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 501 FKLIGDTPIDTFLMEM 516
>gi|225001482|gb|ACN78601.1| retinoid X receptor 1 [Fenneropenaeus chinensis]
Length = 442
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 102/197 (51%), Gaps = 7/197 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V W + + F LS DQ++LL+ W EL + + S+ +++
Sbjct: 245 CQ-AADRHLVQLVEWAKHIPHFTELSVDDQVILLKAGWNELLIASFSHRSMGVKDGIVLA 303
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++A+ +++ D +E GC+++++LF P+ GL +
Sbjct: 304 TGLVVHRSSAHHAGVGDIFDRVLSELVAKMKEMKMDKTELGCLRSIVLFNPDVKGLSACE 363
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
+E+L+++ L +Y R Y QP RF +LLL LP+LR++ +E LF + +GD P+
Sbjct: 364 TIEVLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFLFKLLGDTPL 423
Query: 270 QRLLGDMYTMEKSYETP 286
D Y M+ E P
Sbjct: 424 -----DNYLMKMLMENP 435
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + +E+L+++ L +Y R Y QP RF +LLL LP+LR++ +E LF
Sbjct: 355 DVKGLSACETIEVLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFL 414
Query: 344 KETIGDIPIQRLLGDM 359
+ +GD P+ L M
Sbjct: 415 FKLLGDTPLDNYLMKM 430
>gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xenopus (Silurana) tropicalis]
gi|89268107|emb|CAJ83850.1| Retinoic acid receptor RXR-beta (Retinoid X receptor beta) [Xenopus
(Silurana) tropicalis]
Length = 449
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 256 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLA 314
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 315 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 374
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 375 DVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 434
Query: 270 QRLLGDM 276
L +M
Sbjct: 435 DTFLMEM 441
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 366 DAKGLSNPGDVEVLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 425
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 426 FKLIGDTPIDTFLMEM 441
>gi|334323757|ref|XP_001377435.2| PREDICTED: retinoic acid receptor RXR-beta-like [Monodelphis
domestica]
Length = 597
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 404 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSISVRDGILLA 462
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 463 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 522
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 523 EVEILREKVYASLESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 582
Query: 270 QRLLGDM 276
L +M
Sbjct: 583 DTFLMEM 589
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 514 DAKGLSNPGEVEILREKVYASLESYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 573
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 574 FKLIGDTPIDTFLMEM 589
>gi|225001484|gb|ACN78602.1| retinoid X receptor 2 [Fenneropenaeus chinensis]
Length = 437
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 102/197 (51%), Gaps = 7/197 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V W + + F LS DQ++LL+ W EL + + S+ +++
Sbjct: 240 CQ-AADRHLVQLVEWAKHIPHFTELSVDDQVILLKAGWNELLIASFSHRSMGVKDGIVLA 298
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++A+ +++ D +E GC+++++LF P+ GL +
Sbjct: 299 TGLVVHRSSAHHAGVGDIFDRVLSELVAKMKEMKMDKTELGCLRSIVLFNPDVKGLSACE 358
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
+E+L+++ L +Y R Y QP RF +LLL LP+LR++ +E LF + +GD P+
Sbjct: 359 TIEVLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFLFKLLGDTPL 418
Query: 270 QRLLGDMYTMEKSYETP 286
D Y M+ E P
Sbjct: 419 -----DNYLMKMLMENP 430
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + +E+L+++ L +Y R Y QP RF +LLL LP+LR++ +E LF
Sbjct: 350 DVKGLSACETIEVLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFL 409
Query: 344 KETIGDIPIQRLLGDM 359
+ +GD P+ L M
Sbjct: 410 FKLLGDTPLDNYLMKM 425
>gi|348576404|ref|XP_003473977.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cavia porcellus]
Length = 531
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 338 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 396
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 397 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 456
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 457 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 516
Query: 270 QRLLGDM 276
L +M
Sbjct: 517 DTFLMEM 523
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 448 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 507
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 508 FKLIGDTPIDTFLMEM 523
>gi|146186460|gb|ABQ09282.1| retinoid X receptor beta 1 [Oryzias latipes]
Length = 194
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 2/184 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 11 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLA 69
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL ++
Sbjct: 70 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNSS 129
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 130 EVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 189
Query: 270 QRLL 273
L
Sbjct: 190 DTFL 193
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL ++ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 121 DAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 180
Query: 344 KETIGDIPIQRLL 356
+ IGD PI L
Sbjct: 181 FKLIGDTPIDTFL 193
>gi|403261960|ref|XP_003923366.1| PREDICTED: retinoic acid receptor RXR-beta [Saimiri boliviensis
boliviensis]
Length = 505
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 312 CQAAD-KQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 370
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 371 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 430
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 431 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 490
Query: 270 QRLLGDM 276
L +M
Sbjct: 491 DTFLMEM 497
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 422 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 481
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 482 FKLIGDTPIDTFLMEM 497
>gi|126513141|gb|ABO15684.1| retinoid X receptor alpha, partial [Latris lineata]
Length = 274
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + F L DQ++LL+ W EL + + SI +L+
Sbjct: 88 CQ-AADKQLFTLVEWAERIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAIKDGILLA 146
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 147 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPG 206
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF IGD PI
Sbjct: 207 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFRLIGDTPI 266
Query: 270 QRLLGDM 276
L +M
Sbjct: 267 DTFLMEM 273
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 198 DSKGLSNPGEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 257
Query: 344 KETIGDIPIQRLLGDM 359
IGD PI L +M
Sbjct: 258 FRLIGDTPIDTFLMEM 273
>gi|242000854|ref|XP_002435070.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215498400|gb|EEC07894.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 400
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V W + + F L D+++LL+ W EL + + SI +++
Sbjct: 208 CQAAD-RQLHQLVEWAKHIPHFVELPLEDRMVLLKAGWNELLIAAFSHRSIGVRDGIVLA 266
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+R V +++ E++A+ R++ D +E GC++AV+LF PE GL
Sbjct: 267 TGLVVQRHSAHGAGVGAIFDRVLTELVAKMREMKMDRTELGCLRAVVLFNPEAKGLRSTA 326
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L ++ R +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 327 QVEALREKVYAALEEHCRQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 386
Query: 270 QRLLGDM 276
L M
Sbjct: 387 DNFLLSM 393
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL VE L+++ L ++ R +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 318 EAKGLRSTAQVEALREKVYAALEEHCRQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 377
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L M
Sbjct: 378 FKLIGDTPIDNFLLSM 393
>gi|410926021|ref|XP_003976477.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Takifugu rubripes]
Length = 417
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 224 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLA 282
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 283 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPS 342
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 343 EVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 402
Query: 270 QRLLGDM 276
L +M
Sbjct: 403 DTFLMEM 409
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 334 DAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 393
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 394 FKLIGDTPIDTFLMEM 409
>gi|49259353|pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 43 CQAADKQL-FTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 101
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 102 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 161
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 162 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 221
Query: 270 QRLLGDM 276
L +M
Sbjct: 222 DTFLMEM 228
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 153 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 212
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 213 FKLIGDTPIDTFLMEM 228
>gi|139948543|ref|NP_001077109.1| retinoic acid receptor RXR-beta [Bos taurus]
gi|63169170|gb|AAY34706.1| retinoid X receptor beta [Bos taurus]
Length = 532
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 339 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 397
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 398 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 457
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 458 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 517
Query: 270 QRLLGDM 276
L +M
Sbjct: 518 DTFLMEM 524
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 509 FKLIGDTPIDTFLMEM 524
>gi|301757105|ref|XP_002914382.1| PREDICTED: retinoic acid receptor RXR-beta-like [Ailuropoda
melanoleuca]
Length = 532
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 339 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 397
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 398 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 457
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 458 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 517
Query: 270 QRLLGDM 276
L +M
Sbjct: 518 DTFLMEM 524
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 509 FKLIGDTPIDTFLMEM 524
>gi|148678299|gb|EDL10246.1| retinoid X receptor beta, isoform CRA_a [Mus musculus]
Length = 451
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 258 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 316
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 317 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 376
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 377 EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 436
Query: 270 QRLLGDM 276
L +M
Sbjct: 437 DTFLMEM 443
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 368 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 428 FKLIGDTPIDTFLMEM 443
>gi|444729063|gb|ELW69492.1| Retinoic acid receptor RXR-beta [Tupaia chinensis]
Length = 408
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 215 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 273
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 274 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 333
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 334 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 393
Query: 270 QRLLGDM 276
L +M
Sbjct: 394 DTFLMEM 400
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 325 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 384
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 385 FKLIGDTPIDTFLMEM 400
>gi|432094623|gb|ELK26129.1| Retinoic acid receptor RXR-beta [Myotis davidii]
Length = 574
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 381 CQAAD-KQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 439
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 440 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 499
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 500 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 559
Query: 270 QRLLGDM 276
L +M
Sbjct: 560 DTFLMEM 566
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 491 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 550
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 551 FKLIGDTPIDTFLMEM 566
>gi|196015032|ref|XP_002117374.1| hypothetical protein TRIADDRAFT_16711 [Trichoplax adhaerens]
gi|190580127|gb|EDV20213.1| hypothetical protein TRIADDRAFT_16711 [Trichoplax adhaerens]
Length = 222
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E R L M + W + + + +L DQ++LLQ SW E+F++ LA S+P+D L+ C+
Sbjct: 36 EMVERELVMVIDWAKRIPGYTSLCLNDQVVLLQASWLEVFMIDLAFRSMPYDNKLVYACD 95
Query: 153 KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
++ + E++ ++R +S D E C+KA+ L ++ L D VE
Sbjct: 96 MVMGHKQSRAAGLDEINRHAFELVTKYRSISMDKQEFACLKAIALVNSDSRNLTDVSRVE 155
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
+Q L Y Y QP RF +LL+ LP L+A+ IE+LF + G++P+ L
Sbjct: 156 SVQGTLYLALQRYTLLNYPEQPLRFAQLLMTLPELKAISSRGIEKLFSIKVAGEVPMYNL 215
Query: 273 LGDM 276
L +M
Sbjct: 216 LLEM 219
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ L D VE +Q L Y Y QP RF +LL+ LP L+A+ IE+LF
Sbjct: 144 DSRNLTDVSRVESVQGTLYLALQRYTLLNYPEQPLRFAQLLMTLPELKAISSRGIEKLFS 203
Query: 344 KETIGDIPIQRLLGDM 359
+ G++P+ LL +M
Sbjct: 204 IKVAGEVPMYNLLLEM 219
>gi|84028531|gb|ABC49724.1| retinoid X receptor 1 [Petromyzon marinus]
Length = 476
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 285 CQAADKQF-FTLVEWSKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIGVSDGILLA 343
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++++ R ++ D +E GC++A +LF P+ GL
Sbjct: 344 TGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRATVLFNPDAKGLSSPC 403
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + I D PI
Sbjct: 404 DVEALREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLISDTPI 463
Query: 270 QRLLGDM 276
L +M
Sbjct: 464 DTFLMEM 470
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 395 DAKGLSSPCDVEALREKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 454
Query: 344 KETIGDIPIQRLLGDM 359
+ I D PI L +M
Sbjct: 455 FKLISDTPIDTFLMEM 470
>gi|66347234|emb|CAI95622.1| retinoid X receptor, beta [Homo sapiens]
Length = 482
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 289 CQAADKQL-FTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 347
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 348 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 407
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 408 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 467
Query: 270 QRLLGDM 276
L +M
Sbjct: 468 DTFLMEM 474
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 399 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 458
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 459 FKLIGDTPIDTFLMEM 474
>gi|73972484|ref|XP_538856.2| PREDICTED: retinoid X receptor, beta isoform 1 [Canis lupus
familiaris]
Length = 532
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 339 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 397
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 398 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 457
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 458 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 517
Query: 270 QRLLGDM 276
L +M
Sbjct: 518 DTFLMEM 524
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 509 FKLIGDTPIDTFLMEM 524
>gi|62900941|sp|Q5TJF7.1|RXRB_CANFA RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|55956944|emb|CAI11431.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 533
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 340 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 398
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 399 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 458
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 459 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 518
Query: 270 QRLLGDM 276
L +M
Sbjct: 519 DTFLMEM 525
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 510 FKLIGDTPIDTFLMEM 525
>gi|32169341|emb|CAD99183.1| retinoid X receptor [Dicentrarchus labrax]
Length = 274
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ+ LL+ W EL + + SI +L+
Sbjct: 88 CQ-AADKQLFTLVEWAKRIPHFSELQLDDQVTLLRAGWNELLIASFSHRSIAIKDGILLA 146
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 147 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPS 206
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ E LFF + IGD PI
Sbjct: 207 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCQEHLFFFKLIGDTPI 266
Query: 270 QRLLGDM 276
L +M
Sbjct: 267 DTFLMEM 273
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ E LFF
Sbjct: 198 DSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCQEHLFF 257
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 258 FKLIGDTPIDTFLMEM 273
>gi|158302179|ref|XP_321796.4| AGAP001348-PA [Anopheles gambiae str. PEST]
gi|157012826|gb|EAA01088.4| AGAP001348-PA [Anopheles gambiae str. PEST]
Length = 430
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 106/185 (57%), Gaps = 22/185 (11%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E+ A+LLF+AV+W + + F L DQ LLL+E+W ELF++ AQW +P D +
Sbjct: 264 ESAAKLLFLAVKWAKTVPSFLQLPANDQKLLLEEAWAELFVITAAQWGLPIDNEFI---- 319
Query: 153 KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
AR P V++ + I+ Q +AR D E C+KA++LF P+ P L A V
Sbjct: 320 -ARN---PQAVKLQSAIQ--QFGIARV-----DYREAACLKALVLFRPDQPRLYAAHEVL 368
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI-ERLFFKETIGDIPIQR 271
+LQDQ +L + G R G LLL+LP+++A + + + + F++T+G++ I+R
Sbjct: 369 LLQDQTVALLHEKCGG------VRLGHLLLLLPAIKAAANAKVLQEMLFRKTVGEVAIER 422
Query: 272 LLGDM 276
LL D+
Sbjct: 423 LLLDL 427
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI-ERLF 342
+ P L A V +LQDQ +L + G R G LLL+LP+++A + + + +
Sbjct: 357 DQPRLYAAHEVLLLQDQTVALLHEKCGG------VRLGHLLLLLPAIKAAANAKVLQEML 410
Query: 343 FKETIGDIPIQRLLGDM 359
F++T+G++ I+RLL D+
Sbjct: 411 FRKTVGEVAIERLLLDL 427
>gi|344298826|ref|XP_003421092.1| PREDICTED: retinoic acid receptor RXR-beta-like [Loxodonta
africana]
Length = 532
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 339 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 397
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 398 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 457
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 458 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 517
Query: 270 QRLLGDM 276
L +M
Sbjct: 518 DTFLMEM 524
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 509 FKLIGDTPIDTFLMEM 524
>gi|158253732|gb|AAI54181.1| Zgc:103631 protein [Danio rerio]
Length = 344
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 78/111 (70%)
Query: 167 NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYV 226
++++++QE+ +RF+ L D +E C+KA++LF PET GL D + VE LQDQ+Q +L ++
Sbjct: 232 SDVRVLQEVFSRFKPLQVDPTEFACLKAIVLFKPETRGLKDPEQVENLQDQSQVLLAQHI 291
Query: 227 RGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
Y Q RFGRLLL+LPSL V IE LFF+ TIG+ P+++LL DM+
Sbjct: 292 HTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFFQRTIGNTPMEKLLCDMF 342
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 52/77 (67%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L ++ Y Q RFGRLLL+LPSL V IE LFF
Sbjct: 266 ETRGLKDPEQVENLQDQSQVLLAQHIHTLYPSQVARFGRLLLLLPSLHFVSSERIEHLFF 325
Query: 344 KETIGDIPIQRLLGDMY 360
+ TIG+ P+++LL DM+
Sbjct: 326 QRTIGNTPMEKLLCDMF 342
>gi|432883656|ref|XP_004074314.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 465
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 16/201 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 258 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLA 316
Query: 151 CEKARERLPPDDVRV----------NNEI-----KLIQEILARFRQLSPDGSECGCMKAV 195
R V N E+ +++ E++++ R + D +E GC++A+
Sbjct: 317 TGLHVHRNSAHSAGVGAIFDRELAHNAEVGAIFERVLTELVSKMRDMQMDKTELGCLRAI 376
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
ILF P+ GL ++ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +
Sbjct: 377 ILFNPDAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCL 436
Query: 256 ERLFFKETIGDIPIQRLLGDM 276
E LFF + IGD PI L +M
Sbjct: 437 EHLFFFKLIGDTPIDTFLMEM 457
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL ++ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 382 DAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 441
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 442 FKLIGDTPIDTFLMEM 457
>gi|410958898|ref|XP_003986050.1| PREDICTED: retinoic acid receptor RXR-beta [Felis catus]
Length = 532
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 339 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 397
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 398 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 457
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 458 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 517
Query: 270 QRLLGDM 276
L +M
Sbjct: 518 DTFLMEM 524
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 509 FKLIGDTPIDTFLMEM 524
>gi|426352703|ref|XP_004043849.1| PREDICTED: retinoic acid receptor RXR-beta [Gorilla gorilla
gorilla]
Length = 533
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 340 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 398
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 399 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 458
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 459 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 518
Query: 270 QRLLGDM 276
L +M
Sbjct: 519 DTFLMEM 525
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 510 FKLIGDTPIDTFLMEM 525
>gi|16118883|gb|AAL14642.1| retinoid X receptor beta [Neovison vison]
Length = 525
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 332 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 390
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 391 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 450
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 451 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 510
Query: 270 QRLLGDM 276
L +M
Sbjct: 511 DTFLMEM 517
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 442 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 501
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 502 FKLIGDTPIDTFLMEM 517
>gi|427778501|gb|JAA54702.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 448
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V+W R + F+ L D+ LL+ W EL + + S+ +++
Sbjct: 256 CQAAD-RQLHELVQWARRIPHFEELPVEDRTALLKAGWNELLIAAFSHRSMNARDGIVLA 314
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+R V + +++ E++A+ R + D +E GC++AV+LF P+ GL +
Sbjct: 315 TGLVVQRHSAHSAGVGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLKSTE 374
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VEML+++ L ++ + + QP RFG+LLL LP+LR++ +E LFF + IGD PI
Sbjct: 375 RVEMLREKVYAALEEHCKRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 434
Query: 270 QRLLGDM 276
L ++
Sbjct: 435 DVFLQNV 441
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VEML+++ L ++ + + QP RFG+LLL LP+LR++ +E LFF
Sbjct: 366 DAKGLKSTERVEMLREKVYAALEEHCKRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFF 425
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L ++
Sbjct: 426 FKLIGDTPIDVFLQNV 441
>gi|332246155|ref|XP_003272215.1| PREDICTED: retinoic acid receptor RXR-beta [Nomascus leucogenys]
Length = 533
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 340 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 398
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 399 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 458
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 459 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 518
Query: 270 QRLLGDM 276
L +M
Sbjct: 519 DTFLMEM 525
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 510 FKLIGDTPIDTFLMEM 525
>gi|297661275|ref|XP_002809190.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Pongo abelii]
Length = 532
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 339 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 397
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 398 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 457
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 458 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 517
Query: 270 QRLLGDM 276
L +M
Sbjct: 518 DTFLMEM 524
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 509 FKLIGDTPIDTFLMEM 524
>gi|297290572|ref|XP_001108780.2| PREDICTED: retinoic acid receptor RXR-beta-like [Macaca mulatta]
Length = 534
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 341 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 399
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 400 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 459
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 460 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 519
Query: 270 QRLLGDM 276
L +M
Sbjct: 520 DTFLMEM 526
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 451 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 510
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 511 FKLIGDTPIDTFLMEM 526
>gi|148877301|gb|AAI46261.1| Retinoid X receptor, beta [Bos taurus]
gi|296474560|tpg|DAA16675.1| TPA: retinoid X receptor, beta [Bos taurus]
Length = 532
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 339 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 397
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 398 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 457
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 458 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 517
Query: 270 QRLLGDM 276
L +M
Sbjct: 518 DTFLMEM 524
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 509 FKLIGDTPIDTFLMEM 524
>gi|11415052|ref|NP_068811.1| retinoic acid receptor RXR-beta isoform 2 [Homo sapiens]
gi|114606827|ref|XP_001168893.1| PREDICTED: retinoic acid receptor RXR-beta isoform 4 [Pan
troglodytes]
gi|397474336|ref|XP_003808638.1| PREDICTED: retinoic acid receptor RXR-beta [Pan paniscus]
gi|402866633|ref|XP_003897483.1| PREDICTED: retinoic acid receptor RXR-beta [Papio anubis]
gi|1350911|sp|P28702.2|RXRB_HUMAN RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|30448|emb|CAA45087.1| retinoic acid X receptor b [Homo sapiens]
gi|3172498|gb|AAC18599.1| retinoic X receptor B [Homo sapiens]
gi|3820986|emb|CAA20239.1| retinoid X receptor, beta [Homo sapiens]
gi|4249766|gb|AAD13794.1| retinoic X receptor beta [Homo sapiens]
gi|12654659|gb|AAH01167.1| Retinoid X receptor, beta [Homo sapiens]
gi|30583399|gb|AAP35944.1| retinoid X receptor, beta [Homo sapiens]
gi|60655367|gb|AAX32247.1| retinoid X receptor beta [synthetic construct]
gi|119624084|gb|EAX03679.1| retinoid X receptor, beta [Homo sapiens]
gi|325495499|gb|ADZ17355.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222100|gb|JAA08269.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263016|gb|JAA19474.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295524|gb|JAA26362.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330369|gb|JAA34131.1| retinoid X receptor, beta [Pan troglodytes]
Length = 533
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 340 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 398
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 399 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 458
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 459 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 518
Query: 270 QRLLGDM 276
L +M
Sbjct: 519 DTFLMEM 525
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 510 FKLIGDTPIDTFLMEM 525
>gi|296197857|ref|XP_002746468.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Callithrix
jacchus]
Length = 532
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 339 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 397
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 398 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 457
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 458 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 517
Query: 270 QRLLGDM 276
L +M
Sbjct: 518 DTFLMEM 524
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 509 FKLIGDTPIDTFLMEM 524
>gi|1710720|sp|P49743.1|RXRB_RAT RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor coregulator 1; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
Length = 458
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 265 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 323
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 324 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 383
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 384 EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 443
Query: 270 QRLLGDM 276
L +M
Sbjct: 444 DTFLMEM 450
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 375 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 435 FKLIGDTPIDTFLMEM 450
>gi|307213614|gb|EFN89000.1| Nuclear receptor subfamily 2 group E member 1 [Harpegnathos
saltator]
Length = 415
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 139/310 (44%), Gaps = 47/310 (15%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGIS-SVKIPPTVLYPPSGLKSPP 59
VQHERGPR I + L P +++PP + + +P + +PP
Sbjct: 117 VQHERGPRNSTIR----RQMALYLKEPEVIANIVPPAVTALDLALPKPSAESRVSIAAPP 172
Query: 60 PPSHHHPSMF---LATHQPPPHPGLLQILM----SAEKCQETTARLLFMAVRWVRCLAPF 112
++ LA + P + I + + E E AR+LF V W R L
Sbjct: 173 THPPLPHPIYCNALAMTKFPLNMASFSISLIPPITPESICEQAARILFFNVHWTRDLVTG 232
Query: 113 QTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD--VRVNNEIK 170
L+ DQL+LL+ SW+ELFLL AQ D + LI PP + + E+
Sbjct: 233 ANLTLDDQLMLLEASWRELFLLATAQLMPTLDPTPLI---------PPTSRGIELAIEVN 283
Query: 171 LIQEILARFRQLSPDGSECGCMKAVILFTP----------------------ETPG-LVD 207
+E LA F ++ D E ++A++ F TP L +
Sbjct: 284 RFRETLASFHGMNLDFQEFSYIRAIVHFKAGLECDSLSSSRNSSSSSSTSSSSTPNRLRN 343
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDI 267
V L+D AQ LG + + RFG++LL+LPSLR+V ++I LFFK TIG I
Sbjct: 344 PTAVARLRDSAQLALGQRLSS-ANYGALRFGKMLLLLPSLRSVSANSIAELFFKSTIGVI 402
Query: 268 PIQRLLGDMY 277
PI+R++ DMY
Sbjct: 403 PIERIICDMY 412
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 353
V L+D AQ LG + + RFG++LL+LPSLR+V ++I LFFK TIG IPI+
Sbjct: 347 VARLRDSAQLALGQRLSS-ANYGALRFGKMLLLLPSLRSVSANSIAELFFKSTIGVIPIE 405
Query: 354 RLLGDMY 360
R++ DMY
Sbjct: 406 RIICDMY 412
>gi|46237552|emb|CAE83933.1| retinoid X receptor beta [Rattus norvegicus]
Length = 451
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 258 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 316
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 317 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 376
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 377 EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 436
Query: 270 QRLLGDM 276
L +M
Sbjct: 437 DTFLMEM 443
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 368 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 428 FKLIGDTPIDTFLMEM 443
>gi|337720|gb|AAA60293.1| retinoid X receptor beta [Homo sapiens]
Length = 533
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 340 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 398
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 399 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 458
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 459 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 518
Query: 270 QRLLGDM 276
L +M
Sbjct: 519 DTFLMEM 525
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 510 FKLIGDTPIDTFLMEM 525
>gi|298228982|ref|NP_001177175.1| retinoic acid receptor RXR-beta [Sus scrofa]
gi|147223294|emb|CAN13296.1| retinoid X receptor, beta [Sus scrofa]
Length = 532
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 339 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 397
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 398 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 457
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 458 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 517
Query: 270 QRLLGDM 276
L +M
Sbjct: 518 DTFLMEM 524
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 509 FKLIGDTPIDTFLMEM 524
>gi|206603|gb|AAA42025.1| nuclear receptor co-regulator 1 [Rattus sp.]
Length = 451
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 258 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 316
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 317 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 376
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 377 EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 436
Query: 270 QRLLGDM 276
L +M
Sbjct: 437 DTFLMEM 443
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 368 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 427
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 428 FKLIGDTPIDTFLMEM 443
>gi|13489062|ref|NP_035436.1| retinoic acid receptor RXR-beta isoform 2 [Mus musculus]
gi|1350912|sp|P28704.2|RXRB_MOUSE RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=MHC
class I regulatory element-binding protein H-2RIIBP;
AltName: Full=Nuclear receptor subfamily 2 group B
member 2; AltName: Full=Retinoid X receptor beta
gi|987669|dbj|BAA04858.1| RXR-beta1 isoform [Mus musculus]
gi|3811388|gb|AAC69904.1| RXRbeta [Mus musculus]
gi|29437348|gb|AAH49773.1| Retinoid X receptor beta [Mus musculus]
gi|148678301|gb|EDL10248.1| retinoid X receptor beta, isoform CRA_c [Mus musculus]
Length = 520
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 327 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 385
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 386 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 445
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 446 EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 505
Query: 270 QRLLGDM 276
L +M
Sbjct: 506 DTFLMEM 512
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 437 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 496
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 497 FKLIGDTPIDTFLMEM 512
>gi|355561583|gb|EHH18215.1| hypothetical protein EGK_14773 [Macaca mulatta]
Length = 477
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 284 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 342
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 343 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 402
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 403 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 462
Query: 270 QRLLGDM 276
L +M
Sbjct: 463 DTFLMEM 469
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 394 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 453
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 454 FKLIGDTPIDTFLMEM 469
>gi|291396013|ref|XP_002714529.1| PREDICTED: Retinoic acid receptor RXR-beta-like [Oryctolagus
cuniculus]
Length = 537
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 344 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 402
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 403 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 462
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 463 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 522
Query: 270 QRLLGDM 276
L +M
Sbjct: 523 DTFLMEM 529
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 454 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 513
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 514 FKLIGDTPIDTFLMEM 529
>gi|395832129|ref|XP_003789128.1| PREDICTED: retinoic acid receptor RXR-beta [Otolemur garnettii]
Length = 532
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 339 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 397
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 398 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 457
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 458 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 517
Query: 270 QRLLGDM 276
L +M
Sbjct: 518 DTFLMEM 524
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 449 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 508
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 509 FKLIGDTPIDTFLMEM 524
>gi|226316411|gb|ACO44669.1| retinoid X receptor isoform 2 [Crangon crangon]
Length = 400
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 2/197 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V W + + F L +DQ++LL+ W EL + + SI +++
Sbjct: 203 CQ-AADRHLVQLVEWAKHIPHFTDLPVQDQVVLLKAGWNELLIAAFSHRSIGVKDGIVLA 261
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ +++ D +E GC+++++LF P+ GL
Sbjct: 262 TGLVVHRSSAHQAGVGTIFDRVLSELVAKMKEMKMDKTELGCLRSIVLFNPDARGLTSCN 321
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF + IGD P+
Sbjct: 322 DVEILREKVYAALEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPL 381
Query: 270 QRLLGDMYTMEKSYETP 286
L M + +P
Sbjct: 382 DNYLMKMLVDSPNNSSP 398
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF +
Sbjct: 316 GLTSCNDVEILREKVYAALEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKL 375
Query: 347 IGDIPIQRLLGDM 359
IGD P+ L M
Sbjct: 376 IGDTPLDNYLMKM 388
>gi|327315360|ref|NP_001192145.1| retinoic acid receptor RXR-beta isoform 4 [Mus musculus]
gi|54024|emb|CAA46963.1| retinoid X receptor-beta [Mus musculus]
gi|987670|dbj|BAA04859.1| RXR-beta2 isoform [Mus musculus]
Length = 410
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 217 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 275
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 276 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 335
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 336 EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 395
Query: 270 QRLLGDM 276
L +M
Sbjct: 396 DTFLMEM 402
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 327 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 386
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 387 FKLIGDTPIDTFLMEM 402
>gi|431916881|gb|ELK16641.1| Retinoic acid receptor RXR-beta [Pteropus alecto]
Length = 531
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 338 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 396
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 397 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 456
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 457 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 516
Query: 270 QRLLGDM 276
L +M
Sbjct: 517 DTFLMEM 523
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 448 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 507
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 508 FKLIGDTPIDTFLMEM 523
>gi|226316409|gb|ACO44668.1| retinoid X receptor isoform 1 [Crangon crangon]
Length = 405
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 2/197 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V W + + F L +DQ++LL+ W EL + + SI +++
Sbjct: 208 CQ-AADRHLVQLVEWAKHIPHFTDLPVQDQVVLLKAGWNELLIAAFSHRSIGVKDGIVLA 266
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ +++ D +E GC+++++LF P+ GL
Sbjct: 267 TGLVVHRSSAHQAGVGTIFDRVLSELVAKMKEMKMDKTELGCLRSIVLFNPDARGLTSCN 326
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF + IGD P+
Sbjct: 327 DVEILREKVYAALEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPL 386
Query: 270 QRLLGDMYTMEKSYETP 286
L M + +P
Sbjct: 387 DNYLMKMLVDSPNNSSP 403
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF +
Sbjct: 321 GLTSCNDVEILREKVYAALEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKL 380
Query: 347 IGDIPIQRLLGDM 359
IGD P+ L M
Sbjct: 381 IGDTPLDNYLMKM 393
>gi|432908440|ref|XP_004077862.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 443
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 14/199 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T + LF V W + + F L DQ++LL+ W EL + + SIP +
Sbjct: 238 CQ-TADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIPLKDGGSLA 296
Query: 151 CEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQLSPDGSECGCMKAVIL 197
E R+ V + E+ +++ E++ + R + D +E GC++A++L
Sbjct: 297 SELQRDGSHAAGVGAIFDRESVQSAEVGAIFDRVLTELVNKMRDMQMDKTELGCLRAIVL 356
Query: 198 FTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
F P+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E
Sbjct: 357 FNPDAKGLSNTSEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEH 416
Query: 258 LFFKETIGDIPIQRLLGDM 276
LFF + IGD PI L +M
Sbjct: 417 LFFFKLIGDTPIDTFLMEM 435
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 360 DAKGLSNTSEVELLREKVYASLEAYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 419
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 420 FKLIGDTPIDTFLMEM 435
>gi|33943178|gb|AAQ55293.1| nuclear receptor RXR-l [Locusta migratoria]
Length = 411
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 2/207 (0%)
Query: 71 ATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKE 130
A +Q + I +A CQ T + LF V W + + F +L DQ+LLL+ W E
Sbjct: 199 AENQVEYESTMNNICQAANICQATN-KQLFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNE 257
Query: 131 LFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSEC 189
L + + S+ +++ R V +++ E++A+ R++ D +E
Sbjct: 258 LLIAAFSHRSVDVKDGIVLATGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTEL 317
Query: 190 GCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRA 249
GC+++VILF PE GL AQ VE+L+++ L +Y R + +P RF +LLL LPSLR+
Sbjct: 318 GCLRSVILFNPEVRGLKSAQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPSLRS 377
Query: 250 VRQSTIERLFFKETIGDIPIQRLLGDM 276
+ +E LFF IGD+PI L +M
Sbjct: 378 IGLKCLEHLFFFRLIGDVPIDTFLMEM 404
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL AQ VE+L+++ L +Y R + +P RF +LLL LPSLR++ +E LFF
Sbjct: 329 EVRGLKSAQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPSLRSIGLKCLEHLFF 388
Query: 344 KETIGDIPIQRLLGDM 359
IGD+PI L +M
Sbjct: 389 FRLIGDVPIDTFLMEM 404
>gi|427796277|gb|JAA63590.1| Putative retinoid x receptor alpha a, partial [Rhipicephalus
pulchellus]
Length = 420
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V+W R + F+ L D+ LL+ W EL + + S+ +++
Sbjct: 228 CQAAD-RQLHELVQWARRIPHFEELPVEDRTALLKAGWNELLIAAFSHRSMNARDGIVLA 286
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+R V + +++ E++A+ R + D +E GC++AV+LF P+ GL +
Sbjct: 287 TGLVVQRHSAHSAGVGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLKSTE 346
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VEML+++ L ++ + + QP RFG+LLL LP+LR++ +E LFF + IGD PI
Sbjct: 347 RVEMLREKVYAALEEHCKRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 406
Query: 270 QRLLGDM 276
L ++
Sbjct: 407 DVFLQNV 413
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VEML+++ L ++ + + QP RFG+LLL LP+LR++ +E LFF
Sbjct: 338 DAKGLKSTERVEMLREKVYAALEEHCKRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFF 397
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L ++
Sbjct: 398 FKLIGDTPIDVFLQNV 413
>gi|77404367|ref|NP_996731.2| retinoic acid receptor RXR-beta [Rattus norvegicus]
gi|149043372|gb|EDL96823.1| rCG60716 [Rattus norvegicus]
Length = 518
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 325 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 383
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 384 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 443
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 444 EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 503
Query: 270 QRLLGDM 276
L +M
Sbjct: 504 DTFLMEM 510
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 435 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 494
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 495 FKLIGDTPIDTFLMEM 510
>gi|7709422|gb|AAA40081.2| retinoid X receptor beta [Mus musculus]
Length = 448
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 255 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 313
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+I+F P+ GL +
Sbjct: 314 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIIMFNPDAKGLSNPG 373
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 374 EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 433
Query: 270 QRLLGDM 276
L +M
Sbjct: 434 DTFLMEM 440
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 365 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 424
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 425 FKLIGDTPIDTFLMEM 440
>gi|56608614|gb|AAW02952.1| ultraspiracle [Melipona scutellaris]
Length = 427
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
T + LF V W + + F +L DQ+LLL+ W EL + + SI +++
Sbjct: 236 NATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG 295
Query: 153 KARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R V +++ E++++ R++ D +E GC++++ILF PE GL Q V
Sbjct: 296 ITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEV 355
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
+L+++ L Y R + RF +LLL LP++R++ +E LFF + IGD+PI
Sbjct: 356 TLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIGDVPIDD 415
Query: 272 LLGDM 276
L +M
Sbjct: 416 FLVEM 420
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q V +L+++ L Y R + RF +LLL LP++R++ +E LFF
Sbjct: 345 EVRGLKSIQEVTLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFF 404
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD+PI L +M
Sbjct: 405 FKMIGDVPIDDFLVEM 420
>gi|426250132|ref|XP_004018792.1| PREDICTED: retinoic acid receptor RXR-beta [Ovis aries]
Length = 536
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 343 CQAAD-KQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 401
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 402 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 461
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 462 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 521
Query: 270 QRLLGDM 276
L +M
Sbjct: 522 DTFLMEM 528
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 453 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 512
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 513 FKLIGDTPIDTFLMEM 528
>gi|71681086|gb|AAH99776.1| Rxrb protein, partial [Rattus norvegicus]
Length = 485
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 292 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 350
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 351 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 410
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 411 EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 470
Query: 270 QRLLGDM 276
L +M
Sbjct: 471 DTFLMEM 477
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 402 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 461
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 462 FKLIGDTPIDTFLMEM 477
>gi|55956943|emb|CAI11430.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 458
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 261 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 319
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 320 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 379
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 380 SNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 439
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 440 DTPIDTFLMEM 450
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 375 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 435 FKLIGDTPIDTFLMEM 450
>gi|77632652|gb|ABB00308.1| ultraspiracle protein [Scaptotrigona depilis]
Length = 427
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
T + LF V W + + F +L DQ+LLL+ W EL + + SI +++
Sbjct: 236 NATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG 295
Query: 153 KARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R V +++ E++++ R++ D +E GC++++ILF PE GL Q V
Sbjct: 296 ITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEV 355
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
+L+++ L Y R + RF +LLL LP++R++ +E LFF + IGD+PI
Sbjct: 356 TLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIGDVPIDD 415
Query: 272 LLGDM 276
L +M
Sbjct: 416 FLVEM 420
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q V +L+++ L Y R + RF +LLL LP++R++ +E LFF
Sbjct: 345 EVRGLKSIQEVTLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFF 404
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD+PI L +M
Sbjct: 405 FKMIGDVPIDDFLVEM 420
>gi|348541131|ref|XP_003458040.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 2 [Oreochromis
niloticus]
Length = 462
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 14/199 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 257 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLA 315
Query: 151 CEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQLSPDGSECGCMKAVIL 197
R V N E+ +++ E++++ R + D +E GC++A+IL
Sbjct: 316 TGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIIL 375
Query: 198 FTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
F P+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E
Sbjct: 376 FNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEH 435
Query: 258 LFFKETIGDIPIQRLLGDM 276
LFF + IGD PI L +M
Sbjct: 436 LFFFKLIGDTPIDTFLMEM 454
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 379 DAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 438
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 439 FKLIGDTPIDTFLMEM 454
>gi|340719095|ref|XP_003397992.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus terrestris]
gi|350396164|ref|XP_003484463.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus impatiens]
Length = 405
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
T + LF V W + + F +L DQ+LLL+ W EL + + SI +++
Sbjct: 214 NATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG 273
Query: 153 KARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R V +++ E++++ R++ D +E GC++++ILF PE GL Q V
Sbjct: 274 ITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEV 333
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
+L+++ L Y R + RF +LLL LP++R++ +E LFF + IGD+PI
Sbjct: 334 TLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIGDVPIDD 393
Query: 272 LLGDM 276
L +M
Sbjct: 394 FLVEM 398
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q V +L+++ L Y R + RF +LLL LP++R++ +E LFF
Sbjct: 323 EVRGLKSIQEVTLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFF 382
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD+PI L +M
Sbjct: 383 FKMIGDVPIDDFLVEM 398
>gi|427777855|gb|JAA54379.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 407
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 100/187 (53%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V+W R + F+ L D+ LL+ W EL + + S+ +++
Sbjct: 215 CQ-AADRQLHELVQWARRIPHFEELPVEDRTALLKAGWNELLIAAFSHRSMNARDGIVLA 273
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+R V + +++ E++A+ R + D +E GC++AV+LF P+ GL +
Sbjct: 274 TGLVVQRHSAHSAGVGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLKSTE 333
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VEML+++ L ++ + + QP RFG+LLL LP+LR++ +E LFF + IGD PI
Sbjct: 334 RVEMLREKVYAALEEHCKRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 393
Query: 270 QRLLGDM 276
L ++
Sbjct: 394 DVFLQNV 400
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VEML+++ L ++ + + QP RFG+LLL LP+LR++ +E LFF
Sbjct: 325 DAKGLKSTERVEMLREKVYAALEEHCKRHHPDQPGRFGKLLLRLPALRSIGLKCLEHLFF 384
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L ++
Sbjct: 385 FKLIGDTPIDVFLQNV 400
>gi|47223192|emb|CAG11327.1| unnamed protein product [Tetraodon nigroviridis]
Length = 577
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + F L + L++ W ELF+L LAQ + +LS ++
Sbjct: 374 ESASRLLFLSMHWARSIPAFSALGQEANTSLMRSCWNELFILGLAQCAHVMNLSTILTAI 433
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L + V+ V + QE +L D E +KA++LF+P+ PG
Sbjct: 434 INHLQSSFQDDKLSGEKVKQVTEHVWKFQEFCNSMTRLETDSYEYAYLKAIVLFSPDHPG 493
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + +E Q++A L DYV+ Y R R+L LP+LR + S E LFF I
Sbjct: 494 VDGSGQIEKFQEKALMELQDYVQKAYPDDTYRLTRILTRLPALRLMNSSITEELFFTGLI 553
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 554 GNVSIDSIIPYILKMETA 571
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PG+ + +E Q++A L DYV+ Y R R+L LP+LR + S E LFF
Sbjct: 492 PGVDGSGQIEKFQEKALMELQDYVQKAYPDDTYRLTRILTRLPALRLMNSSITEELFFTG 551
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 552 LIGNVSIDSIIPYILKMETA 571
>gi|340719093|ref|XP_003397991.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus terrestris]
gi|350396161|ref|XP_003484462.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus impatiens]
Length = 427
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
T + LF V W + + F +L DQ+LLL+ W EL + + SI +++
Sbjct: 236 NATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG 295
Query: 153 KARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R V +++ E++++ R++ D +E GC++++ILF PE GL Q V
Sbjct: 296 ITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEV 355
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
+L+++ L Y R + RF +LLL LP++R++ +E LFF + IGD+PI
Sbjct: 356 TLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIGDVPIDD 415
Query: 272 LLGDM 276
L +M
Sbjct: 416 FLVEM 420
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q V +L+++ L Y R + RF +LLL LP++R++ +E LFF
Sbjct: 345 EVRGLKSIQEVTLLREKIYAALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFF 404
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD+PI L +M
Sbjct: 405 FKMIGDVPIDDFLVEM 420
>gi|380012603|ref|XP_003690369.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Apis florea]
Length = 440
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
T + LF V W + + F +L DQ+LLL+ W EL + + SI +++
Sbjct: 249 NATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG 308
Query: 153 KARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R V +++ E++++ R++ D +E GC++++ILF PE GL Q V
Sbjct: 309 ITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEV 368
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
+L+++ L Y R + RF +LLL LP++R++ +E LFF + IGD+PI
Sbjct: 369 TLLREKIYGALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIGDVPIDD 428
Query: 272 LLGDM 276
L +M
Sbjct: 429 FLVEM 433
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q V +L+++ L Y R + RF +LLL LP++R++ +E LFF
Sbjct: 358 EVRGLKSIQEVTLLREKIYGALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFF 417
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD+PI L +M
Sbjct: 418 FKMIGDVPIDDFLVEM 433
>gi|355748459|gb|EHH52942.1| hypothetical protein EGM_13484, partial [Macaca fascicularis]
Length = 475
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 278 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 336
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 337 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 396
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 397 SNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 456
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 457 DTPIDTFLMEM 467
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 392 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 451
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 452 FKLIGDTPIDTFLMEM 467
>gi|35311|emb|CAA46456.1| MHC class I promoter binding protein [Homo sapiens]
Length = 231
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 34 CQAADKQL-FTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 92
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 93 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 152
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 153 SNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 212
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 213 DTPIDTFLMEM 223
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 148 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 207
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 208 FKLIGDTPIDTFLMEM 223
>gi|281338473|gb|EFB14057.1| hypothetical protein PANDA_002281 [Ailuropoda melanoleuca]
Length = 536
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 339 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 397
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 398 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 457
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 458 SNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 517
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 518 DTPIDTFLMEM 528
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 453 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 512
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 513 FKLIGDTPIDTFLMEM 528
>gi|147223296|emb|CAN13298.1| retinoid X receptor, beta [Sus scrofa]
Length = 414
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 217 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 275
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 276 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 335
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 336 SNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 395
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 396 DTPIDTFLMEM 406
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 331 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 390
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 391 FKLIGDTPIDTFLMEM 406
>gi|410926023|ref|XP_003976478.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Takifugu rubripes]
Length = 463
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 14/199 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 258 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLA 316
Query: 151 CEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQLSPDGSECGCMKAVIL 197
R V N E+ +++ E++++ R + D +E GC++A+IL
Sbjct: 317 TGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIIL 376
Query: 198 FTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
F P+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E
Sbjct: 377 FNPDAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEH 436
Query: 258 LFFKETIGDIPIQRLLGDM 276
LFF + IGD PI L +M
Sbjct: 437 LFFFKLIGDTPIDTFLMEM 455
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta variant [Homo sapiens]
Length = 577
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 380 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 438
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 439 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 498
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 499 SNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 558
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 559 DTPIDTFLMEM 569
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 494 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 553
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 554 FKLIGDTPIDTFLMEM 569
>gi|148678300|gb|EDL10247.1| retinoid X receptor beta, isoform CRA_b [Mus musculus]
Length = 455
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 258 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 316
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 317 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 376
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 377 SNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 436
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 437 DTPIDTFLMEM 447
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 372 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 431
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 432 FKLIGDTPIDTFLMEM 447
>gi|118343980|ref|NP_001071809.1| nuclear receptor [Ciona intestinalis]
gi|70571095|dbj|BAE06678.1| nuclear receptor [Ciona intestinalis]
Length = 507
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 1/178 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F TL DQ+ LL+ W EL + + SI +++ R
Sbjct: 299 LFTLVEWAKRVPMFGTLPLDDQVTLLRAGWNELLIASFSHRSIEIPDGIILASGLRVYRQ 358
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V +++ E++A+ R +S D +E GC++A++LF P+ L D +E L+++
Sbjct: 359 SAHSAGVGAIFDRVLTELIAKMRDMSMDRTELGCLRAIVLFNPDAKDLTDPAYIETLREK 418
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG+ PI + L D
Sbjct: 419 VYASLEVYCKSKYPDQAGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGNTPIDQFLMD 476
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 288 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 347
L D +E L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + I
Sbjct: 406 LTDPAYIETLREKVYASLEVYCKSKYPDQAGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 465
Query: 348 GDIPIQRLLGD 358
G+ PI + L D
Sbjct: 466 GNTPIDQFLMD 476
>gi|58585210|ref|NP_001011634.1| ultraspiracle [Apis mellifera]
gi|8118613|gb|AAF73057.1|AF263459_1 ultraspiracle protein [Apis mellifera]
gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis mellifera]
Length = 427
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
T + LF V W + + F +L DQ+LLL+ W EL + + SI +++
Sbjct: 236 NATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG 295
Query: 153 KARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R V +++ E++++ R++ D +E GC++++ILF PE GL Q V
Sbjct: 296 ITVHRNSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNPEVRGLKSIQEV 355
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
+L+++ L Y R + RF +LLL LP++R++ +E LFF + IGD+PI
Sbjct: 356 TLLREKIYGALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFFFKMIGDVPIDD 415
Query: 272 LLGDM 276
L +M
Sbjct: 416 FLVEM 420
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q V +L+++ L Y R + RF +LLL LP++R++ +E LFF
Sbjct: 345 EVRGLKSIQEVTLLREKIYGALEGYCRVAWPDDAGRFAKLLLRLPAIRSIGLKCLEYLFF 404
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD+PI L +M
Sbjct: 405 FKMIGDVPIDDFLVEM 420
>gi|393715097|ref|NP_001257330.1| retinoic acid receptor RXR-beta isoform 1 [Homo sapiens]
gi|168277536|dbj|BAG10746.1| retinoic acid receptor RXR-beta [synthetic construct]
gi|325495561|gb|ADZ17386.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222102|gb|JAA08270.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263018|gb|JAA19475.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295526|gb|JAA26363.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330371|gb|JAA34132.1| retinoid X receptor, beta [Pan troglodytes]
Length = 537
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 340 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 398
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 399 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 458
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 459 SNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 518
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 519 DTPIDTFLMEM 529
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 454 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 513
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 514 FKLIGDTPIDTFLMEM 529
>gi|327315358|ref|NP_001192144.1| retinoic acid receptor RXR-beta isoform 3 [Mus musculus]
gi|18044456|gb|AAH19432.1| Rxrb protein [Mus musculus]
gi|74150089|dbj|BAE24359.1| unnamed protein product [Mus musculus]
Length = 414
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 217 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 275
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 276 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 335
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 336 SNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 395
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 396 DTPIDTFLMEM 406
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 331 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 390
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 391 FKLIGDTPIDTFLMEM 406
>gi|148234156|ref|NP_001081830.1| retinoid X receptor, beta [Xenopus laevis]
gi|685085|gb|AAC60748.1| xRXR beta [Xenopus laevis]
Length = 452
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 99/190 (52%), Gaps = 5/190 (2%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSK---RDQLLLLQESWKELFLLHLAQWSIPWDLSL 147
CQ+ + LF V W + + F L + DQ++LL+ W EL + + SI +
Sbjct: 256 CQDAD-KQLFTLVEWAKRIPHFSELPELPLDDQVILLRAGWNELLIASFSHRSISEKDGI 314
Query: 148 LINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
L+ R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 315 LLATGLHVHRNSAHSAGVGAIFERVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLS 374
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD
Sbjct: 375 NPGDVEVLREKVYACLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 434
Query: 267 IPIQRLLGDM 276
PI L +M
Sbjct: 435 TPIDTFLMEM 444
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 369 DAKGLSNPGDVEVLREKVYACLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 428
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 429 FKLIGDTPIDTFLMEM 444
>gi|327315356|ref|NP_001192143.1| retinoic acid receptor RXR-beta isoform 1 [Mus musculus]
gi|74198206|dbj|BAE35275.1| unnamed protein product [Mus musculus]
Length = 524
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 327 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 385
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 386 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 445
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 446 SNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 505
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 506 DTPIDTFLMEM 516
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 441 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 500
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 501 FKLIGDTPIDTFLMEM 516
>gi|20663783|pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663784|pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663785|pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663786|pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 2/184 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 42 CQAADKQL-FTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 100
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 101 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 160
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 161 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 220
Query: 270 QRLL 273
L
Sbjct: 221 DTFL 224
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 152 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 211
Query: 344 KETIGDIPIQRLL 356
+ IGD PI L
Sbjct: 212 FKLIGDTPIDTFL 224
>gi|156378253|ref|XP_001631058.1| predicted protein [Nematostella vectensis]
gi|156218091|gb|EDO38995.1| predicted protein [Nematostella vectensis]
Length = 378
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 127/253 (50%), Gaps = 17/253 (6%)
Query: 38 GISSVKIPPTVLYPPSGLKSPPPPSHHHPS--MFLATHQPPPHPGLLQI-LMSAEKCQET 94
G +S L PP+ +P H + + L T P L + + S + E
Sbjct: 114 GYASESNSEQSLSPPAVRNNPRQEHREHVAEILVLQTEFKVNVPSLAGVQVFSMDYVYEF 173
Query: 95 TARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL------ 148
RLLF+++ W + ++ F+ L K DQ+ LL ++W ++FLL +AQ + LS L
Sbjct: 174 ATRLLFVSIDWTQSISAFRALHKCDQIALLCKTWADIFLLGVAQSISNFPLSPLLSLAAK 233
Query: 149 -INCEKARERLPPDDV----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
I +A++ PP ++ +I I++++ F +L+ D +E +KAV+LF P
Sbjct: 234 DIQQSEAQDPKPPKNIPGQKNTFEKIIAIKDVMFSFEKLNLDATEFAYLKAVVLFNSSDP 293
Query: 204 --GLVDAQPVEMLQDQAQCILGDYVRGRY-SRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
+ D + V+ LQ+Q+ C L Y+ +Y RF ++LL LPSL + + +E LFF
Sbjct: 294 YTCVQDQKQVDKLQEQSHCGLKSYIDSKYPIGNSGRFAKILLRLPSLHLIDRFDVEELFF 353
Query: 261 KETIGDIPIQRLL 273
+G + I+ ++
Sbjct: 354 APLLGGVKIESIM 366
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRY-SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 348
D + V+ LQ+Q+ C L Y+ +Y RF ++LL LPSL + + +E LFF +G
Sbjct: 299 DQKQVDKLQEQSHCGLKSYIDSKYPIGNSGRFAKILLRLPSLHLIDRFDVEELFFAPLLG 358
Query: 349 DIPIQRLL 356
+ I+ ++
Sbjct: 359 GVKIESIM 366
>gi|16580817|dbj|BAB71759.1| retinoid X receptor gamma [Paralichthys olivaceus]
Length = 293
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 94/180 (52%), Gaps = 2/180 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 113 CQ-AADKQLFTLVEWAKRIPHFSELQLDDQVILLRAGWNELLIASFSHRSISVKDGILLA 171
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D SE GC++A+ILF P+ GL +
Sbjct: 172 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKSELGCLRAIILFNPDAKGLSNPS 231
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 232 EVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 291
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 223 DAKGLSNPSEVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 282
Query: 344 KETIGDIPI 352
+ IGD PI
Sbjct: 283 FKLIGDTPI 291
>gi|440909606|gb|ELR59495.1| Retinoic acid receptor RXR-beta [Bos grunniens mutus]
Length = 518
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 321 CQAAD-KQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 379
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 380 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 439
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 440 SNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 499
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 500 DTPIDTFLMEM 510
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 435 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 494
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 495 FKLIGDTPIDTFLMEM 510
>gi|351703545|gb|EHB06464.1| Retinoic acid receptor RXR-beta [Heterocephalus glaber]
Length = 520
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 323 CQAAD-KQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 381
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 382 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 441
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 442 SNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 501
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 502 DTPIDTFLMEM 512
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 437 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 496
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 497 FKLIGDTPIDTFLMEM 512
>gi|4107119|dbj|BAA36340.1| FTZ-F1 beta2 [Rattus norvegicus]
gi|149058495|gb|EDM09652.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_c
[Rattus norvegicus]
Length = 539
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + +I L+
Sbjct: 351 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTI-----FLVT 405
Query: 151 CEKA--RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E + +V NN + L QE++ R R L D E C+K ++LF+ + L +
Sbjct: 406 GEHVDYSSIISNTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENF 465
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L++K GD+P
Sbjct: 466 QLVEGVQEQVNAALLDYTLCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVP 525
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 526 YNNLLIEM 533
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L
Sbjct: 456 SSDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQQTEKFGQLLLRLPEIRAISKQAEDYL 515
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 516 YYKHVNGDVPYNNLLIEM 533
>gi|149058494|gb|EDM09651.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_b
[Rattus norvegicus]
Length = 499
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + +I L+
Sbjct: 311 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTI-----FLVT 365
Query: 151 CEKA--RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E + +V NN + L QE++ R R L D E C+K ++LF+ + L +
Sbjct: 366 GEHVDYSSIISNTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENF 425
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L++K GD+P
Sbjct: 426 QLVEGVQEQVNAALLDYTLCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVP 485
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 486 YNNLLIEM 493
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L
Sbjct: 416 SSDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQQTEKFGQLLLRLPEIRAISKQAEDYL 475
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 476 YYKHVNGDVPYNNLLIEM 493
>gi|13492975|ref|NP_068510.1| nuclear receptor subfamily 5 group A member 2 [Rattus norvegicus]
gi|81907060|sp|Q9QWM1.1|NR5A2_RAT RecName: Full=Nuclear receptor subfamily 5 group A member 2;
AltName: Full=FTZ-F1 beta; AltName: Full=Liver receptor
homolog 1; Short=LRH-1
gi|4107117|dbj|BAA36339.1| FTZ-F1 beta1 [Rattus norvegicus]
Length = 560
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + +I L+
Sbjct: 372 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTI-----FLVT 426
Query: 151 CEKA--RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E + +V NN + L QE++ R R L D E C+K ++LF+ + L +
Sbjct: 427 GEHVDYSSIISNTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENF 486
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L++K GD+P
Sbjct: 487 QLVEGVQEQVNAALLDYTLCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVP 546
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 547 YNNLLIEM 554
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L
Sbjct: 477 SSDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQQTEKFGQLLLRLPEIRAISKQAEDYL 536
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 537 YYKHVNGDVPYNNLLIEM 554
>gi|313230320|emb|CBY08024.1| unnamed protein product [Oikopleura dioica]
Length = 420
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 98/176 (55%), Gaps = 1/176 (0%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F+TL D++ L+Q +W E+ + +A S+ ++ LLI + R
Sbjct: 245 IEWTKMIPQFETLKTDDRVYLVQSAWNEITIADIAHRSMEFEDKLLIGKNEILTRGQATS 304
Query: 163 VRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
V+ ++I E++ + +++ D +E GC+KA+IL+ P+ L D VE L+++
Sbjct: 305 TNVDIIFGRVITELVYKMKEMKLDRTELGCLKAIILYNPDVKQLQDPILVEDLREKVYAT 364
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
L Y + +Y QP RF +LLL LP+LR++ +E +F +T+GD P L+ D +
Sbjct: 365 LEAYSKQKYPEQPGRFAKLLLRLPALRSIGLKCLESMFLFKTVGDTPQIELVRDCF 420
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 353
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E +F +T+GD P
Sbjct: 354 VEDLREKVYATLEAYSKQKYPEQPGRFAKLLLRLPALRSIGLKCLESMFLFKTVGDTPQI 413
Query: 354 RLLGDMY 360
L+ D +
Sbjct: 414 ELVRDCF 420
>gi|62738907|pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L+ + W + + F L DQ++LL+ W EL + + S+ +++
Sbjct: 70 CQ-AADRQLYQLIEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGIMLA 128
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC+++++LF PE GL Q
Sbjct: 129 TGLVVHRNCAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIVLFNPEAKGLKSTQ 188
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ IL +Y R Y Q RF +LLL LP+LR++ +E LFF + +G+ I
Sbjct: 189 QVENLREKVYAILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFFFKLVGNTSI 248
Query: 270 QRLLGDM 276
L M
Sbjct: 249 DSFLLSM 255
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q VE L+++ IL +Y R Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 180 EAKGLKSTQQVENLREKVYAILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFF 239
Query: 344 KETIGDIPIQRLLGDM 359
+ +G+ I L M
Sbjct: 240 FKLVGNTSIDSFLLSM 255
>gi|149058493|gb|EDM09650.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 293
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + +I L+
Sbjct: 105 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTI-----FLVT 159
Query: 151 CEKA--RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E + +V NN + L QE++ R R L D E C+K ++LF+ + L +
Sbjct: 160 GEHVDYSSIISNTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENF 219
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L++K GD+P
Sbjct: 220 QLVEGVQEQVNAALLDYTLCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVP 279
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 280 YNNLLIEM 287
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L
Sbjct: 210 SSDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQQTEKFGQLLLRLPEIRAISKQAEDYL 269
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 270 YYKHVNGDVPYNNLLIEM 287
>gi|229335598|ref|NP_001153241.1| nuclear receptor subfamily 5 group A member 2 isoform 2 [Mus
musculus]
gi|74100341|gb|AAZ99450.1| liver receptor-like protein 1 variant 2 [Mus musculus]
Length = 499
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + +I L+
Sbjct: 311 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTI-----FLVT 365
Query: 151 CEKARER--LPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E + +V NN + L QE++ R R L D E C+K ++LF+ + L +
Sbjct: 366 GEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENL 425
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L++K GD+P
Sbjct: 426 QLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVP 485
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 486 YNNLLIEM 493
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L
Sbjct: 416 SSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYL 475
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 476 YYKHVNGDVPYNNLLIEM 493
>gi|14010847|ref|NP_109601.1| nuclear receptor subfamily 5 group A member 2 isoform 1 [Mus
musculus]
gi|7676159|sp|P45448.3|NR5A2_MOUSE RecName: Full=Nuclear receptor subfamily 5 group A member 2;
AltName: Full=Liver receptor homolog 1; Short=LRH-1
gi|198875|gb|AAA39447.1| liver receptor homologue [Mus musculus]
gi|223460988|gb|AAI37846.1| Nuclear receptor subfamily 5, group A, member 2 [Mus musculus]
Length = 560
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + +I L+
Sbjct: 372 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTI-----FLVT 426
Query: 151 CEKARER--LPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E + +V NN + L QE++ R R L D E C+K ++LF+ + L +
Sbjct: 427 GEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENL 486
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L++K GD+P
Sbjct: 487 QLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVP 546
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 547 YNNLLIEM 554
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L
Sbjct: 477 SSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYL 536
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 537 YYKHVNGDVPYNNLLIEM 554
>gi|124431273|gb|ABN11285.1| ultraspiracle protein [Bemisia tabaci]
Length = 251
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L+ + W + + F L DQ++LL+ W EL + + S+ +++
Sbjct: 59 CQ-AADRQLYQLIEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGIMLA 117
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC+++++LF PE GL Q
Sbjct: 118 TGLVVHRNCAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIVLFNPEAKGLKSTQ 177
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ IL +Y R Y Q RF +LLL LP+LR++ +E LFF + +G+ I
Sbjct: 178 QVENLREKVYAILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFFFKLVGNTSI 237
Query: 270 QRLLGDM 276
L M
Sbjct: 238 DSFLLSM 244
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q VE L+++ IL +Y R Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 169 EAKGLKSTQQVENLREKVYAILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFF 228
Query: 344 KETIGDIPIQRLLGDM 359
+ +G+ I L M
Sbjct: 229 FKLVGNTSIDSFLLSM 244
>gi|68132040|gb|AAY85286.1| TR2, partial [Danio rerio]
Length = 580
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 7/197 (3%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQ---WSIPWDLSLLI 149
E+ +RLLF+++ W R + FQ L + + L++ W ELF L L ++ L+ +I
Sbjct: 377 ESASRLLFLSMHWARSIPAFQALGSENGITLMKACWNELFALGLXCSHIMNVETILTAII 436
Query: 150 N---CEKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
N E+L P+ V+ V I +QE ++SPD E +KAV+LF+P+ +
Sbjct: 437 NHLQTSLDEEKLSPERVKQVMEHIWRMQEFCNSMSRMSPDAYEYAYLKAVVLFSPDHSAV 496
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+E Q++A L DYV Y R +LL+ LP+LR + + E LFF IG
Sbjct: 497 DGTLQIERFQEKAYMELQDYVSKVYPEDTYRLSKLLVRLPALRLMSAAVTEELFFAGLIG 556
Query: 266 DIPIQRLLGDMYTMEKS 282
++ I ++ + ME +
Sbjct: 557 NVQIDSIIPYILKMEST 573
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 353
+E Q++A L DYV Y R +LL+ LP+LR + + E LFF IG++ I
Sbjct: 502 IERFQEKAYMELQDYVSKVYPEDTYRLSKLLVRLPALRLMSAAVTEELFFAGLIGNVQID 561
Query: 354 RLLGDMYTMEKS 365
++ + ME +
Sbjct: 562 SIIPYILKMEST 573
>gi|47216397|emb|CAG01948.1| unnamed protein product [Tetraodon nigroviridis]
Length = 426
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 132/280 (47%), Gaps = 42/280 (15%)
Query: 37 NGISSVKIPPTVLYPPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTA 96
NG+S P + L L++ P P + + P G+ I E A
Sbjct: 156 NGVSGGSQPVSELISQL-LRAEPYPGSRYGHQYSQQSGPDNAMGIDNIC-------ELAA 207
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK--- 153
RLLF V W R + F L DQ+ LL+ SW ELF+L+ AQ ++P ++ L+
Sbjct: 208 RLLFSIVEWARNIPYFPELPVSDQVALLRLSWSELFILNAAQSALPLHMAPLLAAAGFHS 267
Query: 154 ---ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP---------- 200
+ ER+ V +++++ Q+ + + +L D +E C+KA+ LF+P
Sbjct: 268 SPMSAERV----VSFMDQVRVFQDQVDKLTRLQVDSAEYSCLKAIALFSPAHHDSLRKLP 323
Query: 201 --------------ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+
Sbjct: 324 TLAQLNNGATLPPSDACGLTDPVHVESLQEKAQVALTEYERMQYPSQPQRFGRLLLRLPA 383
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
LRAV S I +LFF +G PI+ L+ DM S P
Sbjct: 384 LRAVPASLISQLFFMRLVGKTPIETLIRDMQLSGSSISWP 423
>gi|154936862|dbj|BAF75376.1| retinoid X receptor [Marsupenaeus japonicus]
Length = 442
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 100/197 (50%), Gaps = 7/197 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V W + + F L DQ++LL+ W EL + + S+ +++
Sbjct: 245 CQ-AADRHLVQLVEWAKHIPHFTDLPVDDQVILLKAGWNELLIASFSHRSMGVKDGIVLA 303
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++A+ +++ D +E GC+++++LF P+ GL
Sbjct: 304 TGLVVHRSSAHHAGVGDIFDRVLSELVAKMKEMKMDKTELGCLRSIVLFNPDVKGLSACD 363
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
+E+L+++ L +Y R Y QP RF +LLL LP+LR++ +E LF + +GD P+
Sbjct: 364 TIEVLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFLFKLLGDTPL 423
Query: 270 QRLLGDMYTMEKSYETP 286
D Y M+ E P
Sbjct: 424 -----DNYLMKMLVENP 435
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL +E+L+++ L +Y R Y QP RF +LLL LP+LR++ +E LF
Sbjct: 355 DVKGLSACDTIEVLREKVYATLEEYTRTSYPDQPGRFAKLLLRLPALRSIGLKCLEYLFL 414
Query: 344 KETIGDIPIQRLLGDM 359
+ +GD P+ L M
Sbjct: 415 FKLLGDTPLDNYLMKM 430
>gi|33358129|pdb|1PK5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
gi|33358130|pdb|1PK5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
gi|218766891|pdb|3F5C|A Chain A, Structure Of Dax-1:lrh-1 Complex
Length = 248
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + +I L+
Sbjct: 60 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTI-----FLVT 114
Query: 151 CEKARER--LPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E + +V NN + L QE++ R R L D E C+K ++LF+ + L +
Sbjct: 115 GEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENL 174
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP LRA+ + + L++K GD+P
Sbjct: 175 QLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVNGDVP 234
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 235 YNNLLIEM 242
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP LRA+ + + L
Sbjct: 165 SSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPELRAISKQAEDYL 224
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 225 YYKHVNGDVPYNNLLIEM 242
>gi|417410882|gb|JAA51906.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 459
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 262 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 320
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 321 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 380
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
VE L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 381 SSPSEVEALRERVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 440
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 441 DTPIDTFLMEM 451
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 376 DAKGLSSPSEVEALRERVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 435
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 436 FKLIGDTPIDTFLMEM 451
>gi|197941310|gb|ACH78359.1| retinoid X receptor beta, partial [Sebastiscus marmoratus]
Length = 450
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 97/192 (50%), Gaps = 14/192 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L+ DQ++LL+ W EL + + SI +L+
Sbjct: 258 CQ-AADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGILLA 316
Query: 151 CEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQLSPDGSECGCMKAVIL 197
R V N E+ +++ E++++ R + D +E GC+ A+IL
Sbjct: 317 TGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLPAIIL 376
Query: 198 FTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
F P+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E
Sbjct: 377 FNPDAKGLSNPSEVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEH 436
Query: 258 LFFKETIGDIPI 269
LFF + IGD PI
Sbjct: 437 LFFFKLIGDTPI 448
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPI 352
+ IGD PI
Sbjct: 440 FKLIGDTPI 448
>gi|148707596|gb|EDL39543.1| nuclear receptor subfamily 5, group A, member 2 [Mus musculus]
Length = 451
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + +I L+
Sbjct: 263 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTI-----FLVT 317
Query: 151 CEKARER--LPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E + +V NN + L QE++ R R L D E C+K ++LF+ + L +
Sbjct: 318 GEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENL 377
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L++K GD+P
Sbjct: 378 QLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVP 437
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 438 YNNLLIEM 445
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L
Sbjct: 368 SSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYL 427
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 428 YYKHVNGDVPYNNLLIEM 445
>gi|417410382|gb|JAA51665.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 398
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 201 CQAADKQL-FTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 259
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 260 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 319
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
VE L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 320 SSPSEVEALRERVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 379
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 380 DTPIDTFLMEM 390
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 315 DAKGLSSPSEVEALRERVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 374
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 375 FKLIGDTPIDTFLMEM 390
>gi|338718022|ref|XP_001493349.2| PREDICTED: retinoic acid receptor RXR-beta-like [Equus caballus]
Length = 347
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 150 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 208
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 209 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 268
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 269 SNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 328
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 329 DTPIDTFLMEM 339
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 264 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 323
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 324 FKLIGDTPIDTFLMEM 339
>gi|312371094|gb|EFR19357.1| hypothetical protein AND_22643 [Anopheles darlingi]
Length = 486
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 104/185 (56%), Gaps = 22/185 (11%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E+ A+LLF+AV+W + + F L DQ +LL+E+W ELF++ AQW +P D +
Sbjct: 320 ESAAKLLFLAVKWAKTVPSFLQLPASDQKILLEEAWAELFVITAAQWGLPIDNEFI---- 375
Query: 153 KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
AR P +R+ I+ Q +AR D E C+KA++LF P+ P L A V
Sbjct: 376 -ARN---PLAIRLQGAIQ--QFAVARV-----DYREAACLKALVLFRPDHPRLYAAHEVL 424
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQ-STIERLFFKETIGDIPIQR 271
+LQDQ +L + G R G LLL+LP+++A ++ + F++T+G++ I+R
Sbjct: 425 LLQDQTVALLHEKCGG------VRLGHLLLLLPAIKAAANPKVLQEMLFRKTVGEVAIER 478
Query: 272 LLGDM 276
LL D+
Sbjct: 479 LLLDL 483
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQ-STIERLFFK 344
P L A V +LQDQ +L + G R G LLL+LP+++A ++ + F+
Sbjct: 415 PRLYAAHEVLLLQDQTVALLHEKCGG------VRLGHLLLLLPAIKAAANPKVLQEMLFR 468
Query: 345 ETIGDIPIQRLLGDM 359
+T+G++ I+RLL D+
Sbjct: 469 KTVGEVAIERLLLDL 483
>gi|348502671|ref|XP_003438891.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Oreochromis niloticus]
Length = 630
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 108/216 (50%), Gaps = 12/216 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E + +RLLF+++ W R + F L + L++ W ELF L
Sbjct: 408 PSPMPEYLNVHYICE----SASRLLFLSMHWARSIPAFSALGQEANTSLVRACWNELFTL 463
Query: 135 HLAQWSIPWDLSLLINCEKARERLPPDDVRVNNE-IKLIQEILARFRQ-------LSPDG 186
LAQ + +LS ++ + D +++ E +K + E + +F++ L D
Sbjct: 464 GLAQCAHVMNLSTILAAIINHLQSSIQDDKLSGERVKQVMEHIWKFQEFCNSMTRLETDS 523
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+ PG+ + +E Q++A L DYV+ Y R R+L LP+
Sbjct: 524 YEYAYLKAIVLFSPDHPGVDSSGQIEKFQEKALMELQDYVQKTYPDDTYRLTRILTRLPA 583
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
LR + S E LFF IG++ I ++ + ME +
Sbjct: 584 LRLMNSSITEELFFTGLIGNVSIDSIIPYILKMETA 619
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PG+ + +E Q++A L DYV+ Y R R+L LP+LR + S E LFF
Sbjct: 540 PGVDSSGQIEKFQEKALMELQDYVQKTYPDDTYRLTRILTRLPALRLMNSSITEELFFTG 599
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 600 LIGNVSIDSIIPYILKMETA 619
>gi|327176811|gb|AEA29832.1| retinoid X receptor splice variant [Homarus americanus]
Length = 410
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V W + + F L DQ++LL+ W EL + + S+ + +++
Sbjct: 213 CQ-AADRHLVQLVEWAKHIPHFTDLPVEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLA 271
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ +++ D +E GC+++++L+ P+ GL
Sbjct: 272 TGLVVHRSSAHQAGVGTIFDRVLSELVAKMKEMKMDKTELGCLRSIVLYNPDAKGLTCCN 331
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF + IGD P+
Sbjct: 332 DVEILREKVYAALEEYTRTSYPEEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPL 391
Query: 270 QRLLGDM 276
L M
Sbjct: 392 DNYLMKM 398
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF
Sbjct: 323 DAKGLTCCNDVEILREKVYAALEEYTRTSYPEEPGRFAKLLLRLPALRSIGLKCLEYLFL 382
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD P+ L M
Sbjct: 383 FKLIGDTPLDNYLMKM 398
>gi|226316413|gb|ACO44670.1| retinoid X receptor isoform 3 [Crangon crangon]
Length = 399
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 3/197 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V W + + F L +DQ++LL+ W EL + + SI +++
Sbjct: 203 CQ-AADRHLVQLVEWAKHIPHFTDLPVQDQVVLLKAGWNELLIAAFSHRSIGVKDGIVL- 260
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ +++ D +E GC+++++LF P+ GL
Sbjct: 261 ATGLVHRSSAHQAGVGTIFDRVLSELVAKMKEMKMDKTELGCLRSIVLFNPDARGLTSCN 320
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF + IGD P+
Sbjct: 321 DVEILREKVYAALEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPL 380
Query: 270 QRLLGDMYTMEKSYETP 286
L M + +P
Sbjct: 381 DNYLMKMLVDSPNNSSP 397
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF +
Sbjct: 315 GLTSCNDVEILREKVYAALEEYTRTSYPHEPGRFAKLLLRLPALRSIGLKCLEYLFLFKL 374
Query: 347 IGDIPIQRLLGDM 359
IGD P+ L M
Sbjct: 375 IGDTPLDNYLMKM 387
>gi|62122587|dbj|BAD93255.1| RXRB [Oryzias latipes]
Length = 427
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 16/199 (8%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 224 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLR--WNELLIASFSHRSISVKDGILLA 280
Query: 151 CEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQLSPDGSECGCMKAVIL 197
R V N E+ +++ E++++ R + D +E GC++A+IL
Sbjct: 281 TGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFERVLTELVSKMRDMQMDKTELGCLRAIIL 340
Query: 198 FTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
F P+ GL ++ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E
Sbjct: 341 FNPDAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEH 400
Query: 258 LFFKETIGDIPIQRLLGDM 276
LFF + IGD PI L +M
Sbjct: 401 LFFFKLIGDTPIDTFLMEM 419
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL ++ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 344 DAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 403
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 404 FKLIGDTPIDTFLMEM 419
>gi|18157523|dbj|BAB83838.1| RXRB [Oryzias latipes]
Length = 427
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 15/191 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L DQ++LL+ W EL + + SI +L+ R
Sbjct: 231 LFTLVEWAKRIPHFSELPLDDQVILLR--WNELLIASFSHRSISVKDGILLATGLHVHRN 288
Query: 159 PPDDVRV--------NNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
V N E+ +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 289 SAHSAGVGAIFDRAHNAEVGAIFERVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGL 348
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
++ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IG
Sbjct: 349 SNSSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 408
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 409 DTPIDTFLMEM 419
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL ++ VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 344 DAKGLSNSSEVELLRERVYASLETYCKHKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 403
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 404 FKLIGDTPIDTFLMEM 419
>gi|73535941|pdb|1ZH7|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
gi|73535942|pdb|1ZH7|B Chain B, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
Length = 243
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + +I L+
Sbjct: 55 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTI-----FLVT 109
Query: 151 CEKARER--LPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E + +V NN + L QE++ R R L D E C+K ++LF+ + L +
Sbjct: 110 GEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENL 169
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L++K GD+P
Sbjct: 170 QLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVP 229
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 230 YNNLLIEM 237
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L
Sbjct: 160 SSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYL 219
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 220 YYKHVNGDVPYNNLLIEM 237
>gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor [Gecarcinus lateralis]
Length = 431
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 14/240 (5%)
Query: 60 PPSHHHPSMFL----ATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTL 115
PP S L A+ P +P LQ ++S CQ R L V W + + F L
Sbjct: 200 PPDSEKCSFTLPFHPASEVPCANP--LQDVVS-NICQ-AADRHLVQLVEWAKHIPHFTDL 255
Query: 116 SKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQE 174
DQ++LL+ W EL + + S+ + +++ R V +++ E
Sbjct: 256 PIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAGVGAIFDRVLSE 315
Query: 175 ILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP 234
++A+ +++ D +E GC+++++LF P+ GL VE+L+++ L +Y R Y +P
Sbjct: 316 LVAKMKEMKIDKTELGCLRSIVLFNPDAKGLNCCNDVEILREKVYAALEEYTRTTYPDEP 375
Query: 235 TRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPV 294
RF +LLL LP+LR++ +E LF + IGD P+ D Y M+ + P + P
Sbjct: 376 GRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPL-----DSYLMKMLVDNPNSSNTPPT 430
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF
Sbjct: 342 DAKGLNCCNDVEILREKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFL 401
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD P+ L M
Sbjct: 402 FKLIGDTPLDSYLMKM 417
>gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor [Gecarcinus lateralis]
Length = 432
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 14/240 (5%)
Query: 60 PPSHHHPSMFL----ATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTL 115
PP S L A+ P +P LQ ++S CQ R L V W + + F L
Sbjct: 201 PPDSEKCSFTLPFHPASEVPCANP--LQDVVS-NICQAAD-RHLVQLVEWAKHIPHFTDL 256
Query: 116 SKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQE 174
DQ++LL+ W EL + + S+ + +++ R V +++ E
Sbjct: 257 PIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAGVGAIFDRVLSE 316
Query: 175 ILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP 234
++A+ +++ D +E GC+++++LF P+ GL VE+L+++ L +Y R Y +P
Sbjct: 317 LVAKMKEMKIDKTELGCLRSIVLFNPDAKGLNCCNDVEILREKVYAALEEYTRTTYPDEP 376
Query: 235 TRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPV 294
RF +LLL LP+LR++ +E LF + IGD P+ D Y M+ + P + P
Sbjct: 377 GRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPL-----DSYLMKMLVDNPNSSNTPPT 431
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF
Sbjct: 343 DAKGLNCCNDVEILREKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFL 402
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD P+ L M
Sbjct: 403 FKLIGDTPLDSYLMKM 418
>gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor [Gecarcinus lateralis]
Length = 436
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 14/240 (5%)
Query: 60 PPSHHHPSMFL----ATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTL 115
PP S L A+ P +P LQ ++S CQ R L V W + + F L
Sbjct: 205 PPDSEKCSFTLPFHPASEVPCANP--LQDVVS-NICQ-AADRHLVQLVEWAKHIPHFTDL 260
Query: 116 SKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQE 174
DQ++LL+ W EL + + S+ + +++ R V +++ E
Sbjct: 261 PIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLATGLVIHRSSAHQAGVGAIFDRVLSE 320
Query: 175 ILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP 234
++A+ +++ D +E GC+++++LF P+ GL VE+L+++ L +Y R Y +P
Sbjct: 321 LVAKMKEMKIDKTELGCLRSIVLFNPDAKGLNCCNDVEILREKVYAALEEYTRTTYPDEP 380
Query: 235 TRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPV 294
RF +LLL LP+LR++ +E LF + IGD P+ D Y M+ + P + P
Sbjct: 381 GRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPL-----DSYLMKMLVDNPNSSNTPPT 435
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF
Sbjct: 347 DAKGLNCCNDVEILREKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFL 406
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD P+ L M
Sbjct: 407 FKLIGDTPLDSYLMKM 422
>gi|307189123|gb|EFN73579.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 380
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 105/198 (53%), Gaps = 37/198 (18%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L+ E E A+LLF AVR DQ +LL+ESW ELF+L AQWS P D
Sbjct: 207 LLPTENIYEFAAKLLFFAVR--------------DQTILLEESWSELFVLTAAQWSFPVD 252
Query: 145 LSLLINCEKARERLPPDDVRVN------NEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
S L+ P DV + ++ + ++E+LA+ L D SE C+KA++LF
Sbjct: 253 ESTLV----------PTDVPIERREVLLDKARRLRELLAKCVALRVDHSEYACLKAIVLF 302
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
E+ L + V LQ+Q + + R R GRLLL+LP RA+ ++T+ L
Sbjct: 303 KAESRNLCEPGRVSALQEQTVAVFCE-------RDARRVGRLLLLLPPARALCRATLHEL 355
Query: 259 FFKETIGDIPIQRLLGDM 276
FK T+GD+ ++RLLGDM
Sbjct: 356 LFKPTVGDVSVERLLGDM 373
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E+ L + V LQ+Q + + R R GRLLL+LP RA+ ++T+ L F
Sbjct: 305 ESRNLCEPGRVSALQEQTVAVFCE-------RDARRVGRLLLLLPPARALCRATLHELLF 357
Query: 344 KETIGDIPIQRLLGDM 359
K T+GD+ ++RLLGDM
Sbjct: 358 KPTVGDVSVERLLGDM 373
>gi|410899971|ref|XP_003963470.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2-like [Takifugu rubripes]
Length = 629
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E+ +RLLF+++ W R + F L + L++ W ELF+L LAQ + +LS ++
Sbjct: 421 ESASRLLFLSMHWARSIPAFSALGQEANTSLMRSCWNELFILGLAQCAHVMNLSTILTAI 480
Query: 153 KARERLPPDDVRVNNE-IKLIQEILARFRQ-------LSPDGSECGCMKAVILFTPETPG 204
+ D +++ E +K + E + +F++ L D E +KA+ +F+P+ PG
Sbjct: 481 INHLQSSIQDDKLSGEKVKQVMEHVWKFQEFCNSMTRLETDSYEYAYLKAIXVFSPDHPG 540
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + +E Q++A L DYV+ Y R R+L LP+LR + S E LFF I
Sbjct: 541 LDGSGQIEKFQEKALMELQDYVQKTYPDDMYRLTRILTRLPALRLMNSSITEELFFTGLI 600
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 601 GNVSIDSIIPYILKMETA 618
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL + +E Q++A L DYV+ Y R R+L LP+LR + S E LFF
Sbjct: 539 PGLDGSGQIEKFQEKALMELQDYVQKTYPDDMYRLTRILTRLPALRLMNSSITEELFFTG 598
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 599 LIGNVSIDSIIPYILKMETA 618
>gi|432861275|ref|XP_004069587.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oryzias latipes]
Length = 610
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 9/199 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQ-LLLLQESWKELFLLHLAQWS----IPWDLSL 147
E+ +RLLF+++ W R + FQTL+ +D + L++ W ELF L LAQ S + L
Sbjct: 402 ESASRLLFLSMHWARSIPAFQTLAGQDNDINLIKACWNELFALGLAQCSNVMNVGTILGA 461
Query: 148 LIN---CEKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+IN E+L P+ + V I +QE +L+PD E +KA++LF+P+ P
Sbjct: 462 IINHLQTSLQEEKLSPERGKLVMEHIWRMQEFCNSMTKLAPDAYEYAYLKAIVLFSPDHP 521
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 263
G+ D +EM Q++A L DY+ Y R +LLL LP+LR + + E LFF
Sbjct: 522 GIDDIPQIEMFQEKAYTELQDYITRTYPEDSYRLSKLLLRLPALRLISAAVTEELFFAGL 581
Query: 264 IGDIPIQRLLGDMYTMEKS 282
IG++ I ++ + ME +
Sbjct: 582 IGNVQIDSIIPYILKMEST 600
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PG+ D +EM Q++A L DY+ Y R +LLL LP+LR + + E LFF
Sbjct: 521 PGIDDIPQIEMFQEKAYTELQDYITRTYPEDSYRLSKLLLRLPALRLISAAVTEELFFAG 580
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 581 LIGNVQIDSIIPYILKMEST 600
>gi|16580815|dbj|BAB71758.1| retinoid X receptor alpha [Paralichthys olivaceus]
Length = 292
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 2/180 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + S+ +L+
Sbjct: 112 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGILLV 170
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++++ + + D +E GC++A++LF P+ GL +
Sbjct: 171 TGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNPP 230
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 231 EVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 290
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 222 DAKGLSNPPEVEGLREKVYASLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 281
Query: 344 KETIGDIPI 352
+ IGD PI
Sbjct: 282 FKLIGDTPI 290
>gi|291239171|ref|XP_002739506.1| PREDICTED: nuclear orphan receptor TR2/4-like [Saccoglossus
kowalevskii]
Length = 595
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 111/202 (54%), Gaps = 9/202 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + ++Q+ W ELF L LA+ S LS ++
Sbjct: 387 ESASRLLFLSMHWARSIPAFQALGQESHTTIVQKCWSELFTLGLAECSQAMALSAILTAI 446
Query: 152 ------EKARERLPPDDVRVNNE-IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
+++L D V+V E I +QE++ +L D SE +KA+ LF+ + PG
Sbjct: 447 VNHLQTSVQQDKLSADRVKVVMEHIWKLQELVNSISKLQVDSSEFAYLKAITLFSTDHPG 506
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
LV+ + +E Q++A L +YV Y P RF +LLL LP+LR + S +E LFF I
Sbjct: 507 LVNPRQLEKFQEKAVQELQEYVTRAYPASPDRFAKLLLRLPALRLLTPSIMEELFFAGLI 566
Query: 265 GDIPIQRLLGDMYTMEKS-YET 285
G++ I ++ + ME + Y T
Sbjct: 567 GNVQIDSIIPYILRMETADYNT 588
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGLV+ + +E Q++A L +YV Y P RF +LLL LP+LR + S +E L
Sbjct: 501 STDHPGLVNPRQLEKFQEKAVQELQEYVTRAYPASPDRFAKLLLRLPALRLLTPSIMEEL 560
Query: 342 FFKETIGDIPIQRLLGDMYTMEKS 365
FF IG++ I ++ + ME +
Sbjct: 561 FFAGLIGNVQIDSIIPYILRMETA 584
>gi|332023659|gb|EGI63885.1| Retinoic acid receptor RXR-alpha-A [Acromyrmex echinatior]
Length = 403
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 1/185 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
T + L+ V W + + F +L DQ+ LL W EL + + SI S+++
Sbjct: 212 NATKQQLYQLVAWAKHIPHFTSLPVADQVHLLNAGWNELLIAAFSHRSIDTKDSIILTTG 271
Query: 153 KARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
A R V ++I E++++ R++ D +E GC++++ILF P+ G+ Q V
Sbjct: 272 AAVHRHSALQAGVVTIFDRVISELVSKMREMKVDKTELGCLRSIILFNPDVRGIKSIQEV 331
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
+L+++ L +Y R P RF +LLL LPS+R++ + E FF + IG++ ++
Sbjct: 332 SLLREKIYAALEEYTRVNCPDDPGRFAKLLLRLPSIRSIGLKSAEHQFFYKLIGEVCVEN 391
Query: 272 LLGDM 276
+M
Sbjct: 392 FFAEM 396
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
G+ Q V +L+++ L +Y R P RF +LLL LPS+R++ + E FF +
Sbjct: 324 GIKSIQEVSLLREKIYAALEEYTRVNCPDDPGRFAKLLLRLPSIRSIGLKSAEHQFFYKL 383
Query: 347 IGDIPIQRLLGDM 359
IG++ ++ +M
Sbjct: 384 IGEVCVENFFAEM 396
>gi|16565495|gb|AAL26246.1| retinoid X receptor [Petromyzon marinus]
Length = 237
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 2/177 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 61 CQAADKQL-FTLVEWSKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIGVSDGILLT 119
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V + +++ E++++ R ++ D +E GC++A++LF P+ GL
Sbjct: 120 TGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRAIVLFNPDAKGLSSPS 179
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
VE LQ++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD
Sbjct: 180 DVEALQEKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 236
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE LQ++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 171 DAKGLSSPSDVEALQEKVYASLESYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 230
Query: 344 KETIGD 349
+ IGD
Sbjct: 231 FKLIGD 236
>gi|340712958|ref|XP_003395019.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 405
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 145/312 (46%), Gaps = 53/312 (16%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGIS---SVKIPPTVLYPPSGLKS 57
VQHERGPR + + L P ++PP + ++ PPT S +
Sbjct: 109 VQHERGPRNSTLR----RQMALYFKEPEMMASMVPPPTTALDLALPKPPT----ESRVSV 160
Query: 58 PPPPSHH---HPSMF--LATHQPPPHPGLLQIL-----MSAEKCQETTARLLFMAVRWVR 107
P HH HP LA + P + L L ++AE E ARLLF+ V W +
Sbjct: 161 ATPTPHHLLSHPVYCNSLAVSKIPVNMAGLPSLPLIPAVTAESICEQAARLLFLNVHWAK 220
Query: 108 CLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPP--DDVRV 165
LA TL DQL LL+ SW+ELFLL AQ D + L LPP + +
Sbjct: 221 ELAAGTTLVLEDQLTLLEFSWRELFLLAAAQILPTLDPTTL---------LPPAPHGLSL 271
Query: 166 NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP--------------------ETPGL 205
E+ +E LA F ++ D E C++A++LF L
Sbjct: 272 AVEVNRFRETLAGFHAMNLDQHEFACIRAIVLFKAGLDSEPTPSSRSSSGSASPSVGSRL 331
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
DA V L+D AQ LG + G S RFG+LLL+LPSLR+V IE LFF+ TIG
Sbjct: 332 RDAAAVARLRDGAQLALGQRLSG-ASLGALRFGKLLLLLPSLRSVSTHAIEELFFRRTIG 390
Query: 266 DIPIQRLLGDMY 277
IPI+R++ DMY
Sbjct: 391 IIPIERIICDMY 402
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 288 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 347
L DA V L+D AQ LG + G S RFG+LLL+LPSLR+V IE LFF+ TI
Sbjct: 331 LRDAAAVARLRDGAQLALGQRLSG-ASLGALRFGKLLLLLPSLRSVSTHAIEELFFRRTI 389
Query: 348 GDIPIQRLLGDMY 360
G IPI+R++ DMY
Sbjct: 390 GIIPIERIICDMY 402
>gi|190336859|gb|AAI62302.1| Retinoid x receptor, beta b [Danio rerio]
gi|190337908|gb|AAI62301.1| Retinoid x receptor, beta b [Danio rerio]
Length = 422
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 16/201 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSI--------- 141
CQ + LF V W + + F L DQ++LL+ W EL + + SI
Sbjct: 218 CQ-AADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIAAFSHRSISVKDEILLA 276
Query: 142 -----PWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAV 195
P + + + E +R V +++ E++ + R + D +E GC++A+
Sbjct: 277 TGLHVPKESTHNLGVEAFFDRESSHSAEVGALFDRVLTELVCKMRDMQMDKTELGCLRAI 336
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
+LF P+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +
Sbjct: 337 VLFNPDAKGLTSSSEVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCL 396
Query: 256 ERLFFKETIGDIPIQRLLGDM 276
E LFF + IG+ PI L +M
Sbjct: 397 EHLFFFKLIGNTPIDTFLMEM 417
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 342 DAKGLTSSSEVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 401
Query: 344 KETIGDIPIQRLLGDM 359
+ IG+ PI L +M
Sbjct: 402 FKLIGNTPIDTFLMEM 417
>gi|345489439|ref|XP_003426139.1| PREDICTED: retinoic acid receptor RXR [Nasonia vitripennis]
Length = 400
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 1/175 (0%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
V W + L F +L DQ LL+ W EL + + SI + +++ +
Sbjct: 219 VEWAKRLPQFTSLPLEDQARLLRAGWNELQIAAFSHRSIDIEDGIILMTGFTLHKNSAQQ 278
Query: 163 VRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
V +++ E++ + + + D +E GC++A+ILF PE GL Q V+ML+++
Sbjct: 279 AGVGAIFERVLTELVHKMKSMKMDKTELGCLRAIILFNPEVRGLKAHQEVDMLREKVYVA 338
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L +Y R +P RF +LLL LP+LR++ E LFF +GD+P+ LL DM
Sbjct: 339 LDEYTRLHRPDEPGRFAKLLLRLPALRSIGLKCTEHLFFFRLLGDLPLNELLTDM 393
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q V+ML+++ L +Y R +P RF +LLL LP+LR++ E LFF
Sbjct: 318 EVRGLKAHQEVDMLREKVYVALDEYTRLHRPDEPGRFAKLLLRLPALRSIGLKCTEHLFF 377
Query: 344 KETIGDIPIQRLLGDM 359
+GD+P+ LL DM
Sbjct: 378 FRLLGDLPLNELLTDM 393
>gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [Uca pugilator]
Length = 465
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V W + + F L DQ++LL+ W EL + + S+ + +++
Sbjct: 266 CQ-AADRHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGIVLA 324
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ +++ D +E GC+++++LF P+ GL
Sbjct: 325 TGLVIHRSSAHQAGVGAIFDRVLSELVAKMKEMKIDKTELGCLRSIVLFNPDAKGLNCVN 384
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF + IGD P+
Sbjct: 385 DVEILREKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFLFKLIGDTPL 444
Query: 270 QRLLGDM 276
L M
Sbjct: 445 DSYLMKM 451
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE+L+++ L +Y R Y +P RF +LLL LP+LR++ +E LF
Sbjct: 376 DAKGLNCVNDVEILREKVYAALEEYTRTTYPDEPGRFAKLLLRLPALRSIGLKCLEYLFL 435
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD P+ L M
Sbjct: 436 FKLIGDTPLDSYLMKM 451
>gi|156551053|ref|XP_001605819.1| PREDICTED: retinoic acid receptor RXR isoform 1 [Nasonia
vitripennis]
Length = 414
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 1/175 (0%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
V W + L F +L DQ LL+ W EL + + SI + +++ +
Sbjct: 233 VEWAKRLPQFTSLPLEDQARLLRAGWNELQIAAFSHRSIDIEDGIILMTGFTLHKNSAQQ 292
Query: 163 VRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
V +++ E++ + + + D +E GC++A+ILF PE GL Q V+ML+++
Sbjct: 293 AGVGAIFERVLTELVHKMKSMKMDKTELGCLRAIILFNPEVRGLKAHQEVDMLREKVYVA 352
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L +Y R +P RF +LLL LP+LR++ E LFF +GD+P+ LL DM
Sbjct: 353 LDEYTRLHRPDEPGRFAKLLLRLPALRSIGLKCTEHLFFFRLLGDLPLNELLTDM 407
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q V+ML+++ L +Y R +P RF +LLL LP+LR++ E LFF
Sbjct: 332 EVRGLKAHQEVDMLREKVYVALDEYTRLHRPDEPGRFAKLLLRLPALRSIGLKCTEHLFF 391
Query: 344 KETIGDIPIQRLLGDM 359
+GD+P+ LL DM
Sbjct: 392 FRLLGDLPLNELLTDM 407
>gi|391342683|ref|XP_003745645.1| PREDICTED: COUP transcription factor 1-like [Metaseiulus
occidentalis]
Length = 465
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 8/188 (4%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E QET A+LLF ++RW+R FQ L+ DQ++L++ SW ++FL AQ +
Sbjct: 281 ENPQETAAKLLFCSMRWIRSTPAFQQLTCADQMILVEYSWSDIFLCTAAQSRFALPTEGI 340
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
N P + +++ L L+ D +E +KA+ LF PE PGL D
Sbjct: 341 FN--------EPASTFSRKHLHILRRALQELMALNVDNTEYSYLKALALFRPELPGLFDP 392
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+E +Q+Q+ L + + S+ +R RL+L+L LR+ R S +E ++F+ TIG +P
Sbjct: 393 SHIERVQEQSLEALEQHQVAQESKSSSRSNRLILLLGILRSARTSVLEDVYFRSTIGPVP 452
Query: 269 IQRLLGDM 276
I+R+L D+
Sbjct: 453 IERILCDV 460
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E PGL D +E +Q+Q+ L + + S+ +R RL+L+L LR+ R S +E ++F
Sbjct: 385 ELPGLFDPSHIERVQEQSLEALEQHQVAQESKSSSRSNRLILLLGILRSARTSVLEDVYF 444
Query: 344 KETIGDIPIQRLLGDM 359
+ TIG +PI+R+L D+
Sbjct: 445 RSTIGPVPIERILCDV 460
>gi|71559109|gb|AAZ38141.1| USP/RXR [Chimarra marginata]
Length = 330
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 36/210 (17%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L V W RCL F L DQ+LLL+ SW EL ++ +A SI + E RE
Sbjct: 124 RQLRALVDWARCLPHFNRLQLSDQVLLLKSSWNELLIIAIAWRSIEY-------LENERE 176
Query: 157 RLPPDDVRVNNEI-----------------------------KLIQEILARFRQLSPDGS 187
+D N I +++ E+ + RQ+ D +
Sbjct: 177 NDNGNDKTNNKTIPTPQLMCLMPGMTLHRNSALLAGVGVMFDRILSELSLKMRQMRVDQA 236
Query: 188 ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSL 247
E C+KAVILF P+ G+ Q ++ ++D+ +L D+ R R + + RF LLL LP+L
Sbjct: 237 ELACLKAVILFNPDLRGVKGRQEIDAIRDKVYALLEDHCRTRRAGEEGRFASLLLRLPAL 296
Query: 248 RAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
R++ E LFF GD+ I+ L +++
Sbjct: 297 RSISLKCFEHLFFFRLFGDVSIETCLLEVW 326
>gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella germanica]
Length = 413
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L F V W + + F TL DQ+LLL+ W EL + + S+ +++
Sbjct: 220 CQATNKQL-FQLVEWAKHIPHFTTLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLA 278
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC+++VILF P+ GL +Q
Sbjct: 279 TGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSSQ 338
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L +Y R Y +P RF +LLL LPSLR++ +E LFF IG++PI
Sbjct: 339 EVELLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIGNVPI 398
Query: 270 QRLLGDM 276
L +M
Sbjct: 399 DEFLMEM 405
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL +Q VE+L+++ L +Y R Y +P RF +LLL LPSLR++ +E LFF
Sbjct: 333 GLKSSQEVELLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRL 392
Query: 347 IGDIPIQRLLGDM 359
IG++PI L +M
Sbjct: 393 IGNVPIDEFLMEM 405
>gi|361131805|pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 352
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 164 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 218
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 219 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 278
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 279 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 338
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 339 YNNLLIEM 346
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 269 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 328
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 329 YYKHLNGDVPYNNLLIEM 346
>gi|83835516|gb|ABC47791.1| nuclear receptor subfamily 2 group F member 2, partial [Phodopus
sungorus]
Length = 100
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 63/95 (66%)
Query: 192 MKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVR 251
+KA++LFT + GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V
Sbjct: 1 LKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVS 60
Query: 252 QSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
S IE+LFF +G PI+ L+ DM S+ P
Sbjct: 61 SSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWP 95
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 13 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 72
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 73 VGKTPIETLIRDMLLSGSSFN 93
>gi|18859343|ref|NP_571313.1| retinoic acid receptor RXR-beta-B [Danio rerio]
gi|52783418|sp|Q90417.1|RXRBB_DANRE RecName: Full=Retinoic acid receptor RXR-beta-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-B;
AltName: Full=Retinoic acid receptor RXR-delta; AltName:
Full=Retinoid X receptor beta-B; AltName: Full=Retinoid
X receptor delta
gi|1046297|gb|AAC59721.1| retinoid X receptor delta [Danio rerio]
gi|1583306|prf||2120366A retinoid X receptor:ISOTYPE=delta
Length = 422
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 16/201 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSI--------- 141
CQ + LF V W + + F + DQ++LL+ W EL + + SI
Sbjct: 218 CQ-AADKQLFTLVEWAKRVPHFSDVPLDDQVILLRAGWNELLIAAFSHRSISVKDEILLA 276
Query: 142 -----PWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAV 195
P + + + E +R V +++ E++ + R + D +E GC++A+
Sbjct: 277 TGLHVPKESTHNLGVEAFFDRESSHSAEVGALFDRVLTELVCKMRDMQMDKTELGCLRAI 336
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
+LF P+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +
Sbjct: 337 VLFNPDAKGLTSSSEVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCL 396
Query: 256 ERLFFKETIGDIPIQRLLGDM 276
E LFF + IG+ PI L +M
Sbjct: 397 EHLFFFKLIGNTPIDTFLMEM 417
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 342 DAKGLTSSSEVELLREKVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 401
Query: 344 KETIGDIPIQRLLGDM 359
+ IG+ PI L +M
Sbjct: 402 FKLIGNTPIDTFLMEM 417
>gi|224587886|gb|ACN58733.1| Nuclear receptor subfamily 2 group F member 5 [Salmo salar]
Length = 178
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 10/163 (6%)
Query: 130 ELFLLHLAQWSIPWDLSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLS 183
ELF+L+ AQ S+P ++ L+ + ER+ V + I++ QE + + + L
Sbjct: 1 ELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERV----VAFMDHIRVFQEQVEKLKVLQ 56
Query: 184 PDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLM 243
D +E C+K+++LFT + GL D VE +Q+++QC L +YVR +Y QP RFGRLLL
Sbjct: 57 VDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYPSQPNRFGRLLLR 116
Query: 244 LPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
LPSLR V IE+LFF +G PI+ LL DM SY P
Sbjct: 117 LPSLRIVSSPVIEQLFFVRLVGKTPIETLLRDMLLSGSSYNWP 159
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 260 FKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGDYVRGRYS 314
F+E + + + ++ Y+ KS + GL D VE +Q+++QC L +YVR +Y
Sbjct: 45 FQEQVEKLKVLQVDTAEYSCLKSIVLFTSDAMGLSDVAHVESIQEKSQCALEEYVRNQYP 104
Query: 315 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYG 367
QP RFGRLLL LPSLR V IE+LFF +G PI+ LL DM SY
Sbjct: 105 SQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRLVGKTPIETLLRDMLLSGSSYN 157
>gi|24158439|ref|NP_571538.1| nuclear receptor subfamily 5 group A member 2 [Danio rerio]
gi|2429328|gb|AAC60274.1| FTZ-F1 homolog [Danio rerio]
Length = 516
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ+ W+EL +L H + SI LL+
Sbjct: 328 LFSIVEWARSSIFFRELKVDDQMKLLQKCWRELLILDHVFRQVMHAKEGSI-----LLVT 382
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ L +NN + QE++++ R L D E C+K ++LF+ + L +
Sbjct: 383 GQQVDYALIASQAGATLNNLLSHAQELVSKLRSLQLDQREFVCLKFLVLFSLDVKNLENF 442
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 443 HLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 502
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 503 CNNLLIEM 510
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L
Sbjct: 433 SLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 492
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 493 YYKHLNGDVPCNNLLIEM 510
>gi|45686253|gb|AAS75791.1| FTZ-F1 [Acanthopagrus schlegelii]
Length = 520
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 335 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSI-----LLVT 389
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 390 GQQVDYAVIASQAGATLNNLLSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENF 449
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 450 HLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 509
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 510 CNNLLIEM 517
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L
Sbjct: 440 SLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 499
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 500 YYKHLNGDVPCNNLLIEM 517
>gi|392583958|ref|NP_001254822.1| nuclear receptor subfamily 5 group A member 2 [Sus scrofa]
gi|380710168|gb|AFD98843.1| nuclear receptor subfamily 5 group A member 2 isoform 2 [Sus
scrofa]
Length = 443
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 255 LFSIVEWARSSVFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 309
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 310 GQQVDYSIIASQAGTTLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 369
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 370 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 429
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 430 YNNLLIEM 437
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 360 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 419
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 420 YYKHLNGDVPYNNLLIEM 437
>gi|283488474|gb|ADB24760.1| retinoid x receptor [Agelena silvatica]
Length = 406
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
L+ V W + + F L D+ +LL+ W EL + S+ +++ R
Sbjct: 221 LYQLVEWAKHIPHFNDLPLEDRTILLKSGWNELLIASFCHKSVSVKDGIVLASGTIVHRN 280
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
+ V +L+ E++ + R++ D +E GC+KA+ILF PE L Q V L+D+
Sbjct: 281 SAHNAGVGTIFDRLLSELVNKMREMKMDKTELGCLKAIILFNPEAKHLKSTQEVTNLRDK 340
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L +Y + Y +Q RF +LLL LP+LR++ +E LFF + IG+ PI L M
Sbjct: 341 VYTALEEYCKQMYPQQNGRFPKLLLRLPALRSIGLKCLEHLFFFKLIGNTPIDAFLISM 399
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E L Q V L+D+ L +Y + Y +Q RF +LLL LP+LR++ +E LFF
Sbjct: 324 EAKHLKSTQEVTNLRDKVYTALEEYCKQMYPQQNGRFPKLLLRLPALRSIGLKCLEHLFF 383
Query: 344 KETIGDIPIQRLLGDM 359
+ IG+ PI L M
Sbjct: 384 FKLIGNTPIDAFLISM 399
>gi|348523091|ref|XP_003449057.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Oreochromis niloticus]
Length = 521
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 333 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSI-----LLVT 387
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 388 GQQVDYAVIASQAGATLNNLLSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENF 447
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 448 HLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 507
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 508 CNNLLIEM 515
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L
Sbjct: 438 SLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 497
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 498 YYKHLNGDVPCNNLLIEM 515
>gi|221043908|dbj|BAH13631.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 150 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 208
Query: 151 CEKARERLPPDDVRVNNEI-----KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
R V +++ E++++ R + D +E GC++A+ILF P+ GL
Sbjct: 209 TGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGL 268
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE+L+++ L Y + +Y Q RF +LLL LP+ R++ +E LFF + IG
Sbjct: 269 SNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPAPRSIGLKCLEHLFFFKLIG 328
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 329 DTPIDTFLMEM 339
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+ R++ +E LFF
Sbjct: 264 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPAPRSIGLKCLEHLFF 323
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 324 FKLIGDTPIDTFLMEM 339
>gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella germanica]
Length = 436
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L F V W + + F TL DQ+LLL+ W EL + + S+ +++
Sbjct: 243 CQATNKQL-FQLVEWAKHIPHFTTLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLA 301
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC+++VILF P+ GL +Q
Sbjct: 302 TGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSVILFNPDVRGLKSSQ 361
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L +Y R Y +P RF +LLL LPSLR++ +E LFF IG++PI
Sbjct: 362 EVELLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIGNVPI 421
Query: 270 QRLLGDM 276
L +M
Sbjct: 422 DEFLMEM 428
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL +Q VE+L+++ L +Y R Y +P RF +LLL LPSLR++ +E LFF
Sbjct: 356 GLKSSQEVELLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRL 415
Query: 347 IGDIPIQRLLGDM 359
IG++PI L +M
Sbjct: 416 IGNVPIDEFLMEM 428
>gi|218683821|gb|ACL00865.1| steroidogenic factor 1 [Kryptolebias marmoratus]
Length = 524
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 336 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSI-----LLVT 390
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 391 GQQVDYAVIASQAGATLNNLLSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENF 450
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 451 HLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 510
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 511 CNNLLIEM 518
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L
Sbjct: 441 SLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 500
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 501 YYKHLNGDVPCNNLLIEM 518
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQ----LLLLQESWKELFLLHLAQWSIPWDLS 146
CQ + LF V W + + F L DQ L W EL + + SI
Sbjct: 288 CQAAD-KQLFTLVEWAKRIPHFSELPLDDQTTVTLCPALAGWNELLIASFSHRSIAVKDG 346
Query: 147 LLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
+L+ R V +++ E++++ R + D +E GC++A++LF P++ GL
Sbjct: 347 ILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL 406
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
+ VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IG
Sbjct: 407 SNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG 466
Query: 266 DIPIQRLLGDM 276
D PI L +M
Sbjct: 467 DTPIDTFLMEM 477
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 402 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 461
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 462 FKLIGDTPIDTFLMEM 477
>gi|15145791|gb|AAK54449.1| nuclear receptor FF1aE [Danio rerio]
gi|190340123|gb|AAI63522.1| Nr5a2 protein [Danio rerio]
Length = 517
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 329 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHVFRQVMHAKEGSI-----LLVT 383
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ L +NN + QE++++ R L D E C+K ++LF+ + L +
Sbjct: 384 GQQVDYALIASQAGATLNNLLSHAQELVSKLRSLQLDQREFVCLKFLVLFSLDVKNLENF 443
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 444 HLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 503
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 504 CNNLLIEM 511
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L
Sbjct: 434 SLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 493
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 494 YYKHLNGDVPCNNLLIEM 511
>gi|332230768|ref|XP_003264567.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 5 group
A member 2 [Nomascus leucogenys]
Length = 541
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 353 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 407
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 408 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 467
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 468 QXVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 528 YNNLLIEM 535
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 458 SLDVKNLENFQXVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 518 YYKHLNGDVPYNNLLIEM 535
>gi|94959279|gb|ABF47516.1| steroidogenic factor 1 [Odontesthes hatcheri]
Length = 492
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 304 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSI-----LLVT 358
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++ R R L D E C+K ++LF+ + L +
Sbjct: 359 GQQVDYAMIASQAGATLNNLLSHAQELVTRLRSLQLDQREFVCLKFLVLFSLDVKNLENF 418
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 419 HLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 478
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 479 CNNLLIEM 486
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L
Sbjct: 409 SLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 468
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 469 YYKHLNGDVPCNNLLIEM 486
>gi|348513001|ref|XP_003444031.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oreochromis niloticus]
Length = 610
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 110/208 (52%), Gaps = 9/208 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQ-LLLLQESWKELFLLHLAQWS----IPWDLSL 147
E+ +RLLF+++ W R + FQTL +D + L++ W ELF L LAQ S + LS
Sbjct: 402 ESASRLLFLSMHWARSIPAFQTLGGQDNDINLMKFCWNELFALGLAQCSNVMNVGTILSA 461
Query: 148 LIN---CEKARERLPPDDVRVNNE-IKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+IN E+L P+ ++ E I +QE +LSPD E +KA++LF+P+ P
Sbjct: 462 IINHLQTSLQEEKLSPERGKIVMEHIWRMQEFCNSMSKLSPDSYEYAYLKAIVLFSPDHP 521
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 263
G+ + +E Q++A L DYV Y R +LLL LP+LR + + E LFF
Sbjct: 522 GIDNIPQIERFQEKAYMELQDYVTRTYPEDSYRLSKLLLRLPALRLISAAVTEELFFAGL 581
Query: 264 IGDIPIQRLLGDMYTMEKSYETPGLVDA 291
IG++ I ++ + ME + V A
Sbjct: 582 IGNVQIDSIIPYILKMESTDYNSQAVSA 609
>gi|326924950|ref|XP_003208685.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Meleagris gallopavo]
Length = 495
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 307 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----LLVT 361
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 362 GQQVDYSVIASQAGATLNNLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENF 421
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 422 QLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 481
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 482 CNNLLIEM 489
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 412 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYL 471
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 472 YYKHLNGDVPCNNLLIEM 489
>gi|380710166|gb|AFD98842.1| nuclear receptor subfamily 5 group A member 2 isoform 1 [Sus
scrofa]
Length = 495
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 307 LFSIVEWARSSVFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 361
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 362 GQQVDYSIIASQAGTTLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 421
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 422 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 481
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 482 YNNLLIEM 489
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 412 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 471
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 472 YYKHLNGDVPYNNLLIEM 489
>gi|296230345|ref|XP_002760663.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Callithrix jacchus]
Length = 495
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 307 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 361
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 362 GQQVDYSMIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 421
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 422 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 481
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 482 YNNLLIEM 489
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 412 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 471
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 472 YYKHLNGDVPYNNLLIEM 489
>gi|410986212|ref|XP_004001611.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 5 group
A member 2 [Felis catus]
Length = 495
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 307 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 361
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 362 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 421
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 422 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 481
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 482 YNNLLIEM 489
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 412 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 471
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 472 YYKHLNGDVPYNNLLIEM 489
>gi|449268136|gb|EMC79006.1| Nuclear receptor subfamily 5 group A member 2 [Columba livia]
Length = 501
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 313 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----LLVT 367
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENF 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 428 QLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 CNNLLIEM 495
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPCNNLLIEM 495
>gi|410130138|dbj|BAM63276.2| retinoid X receptor [Periplaneta americana]
Length = 416
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 3/185 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L F V W + + F +L DQ+LLL+ W EL + + S+ +++
Sbjct: 220 CQATNKQL-FQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLA 278
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETP-GLVDA 208
R V +++ E++A+ R++ D +E C+++VILF P+ GL
Sbjct: 279 TGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELVCLRSVILFNPDVVRGLKSR 338
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE+L+++ L +Y R + +P RF +LL LPSLR++ +E LFF IG++P
Sbjct: 339 QEVELLREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSLIGNVP 398
Query: 269 IQRLL 273
I
Sbjct: 399 IDEFF 403
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL Q VE+L+++ L +Y R + +P RF +LL LPSLR++ +E LFF
Sbjct: 334 GLKSRQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSL 393
Query: 347 IGDIPIQRLL 356
IG++PI
Sbjct: 394 IGNVPIDEFF 403
>gi|390477376|ref|XP_003735285.1| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Callithrix jacchus]
Length = 501
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 313 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 367
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSMIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 428 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 YNNLLIEM 495
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPYNNLLIEM 495
>gi|4504343|ref|NP_003813.1| nuclear receptor subfamily 5 group A member 2 isoform 2 [Homo
sapiens]
gi|114571712|ref|XP_525014.2| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Pan troglodytes]
gi|397505096|ref|XP_003823110.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Pan paniscus]
gi|402857721|ref|XP_003893394.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Papio anubis]
gi|426333172|ref|XP_004028158.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Gorilla gorilla gorilla]
gi|5002242|gb|AAD37378.1|AF146343_1 CYP7A promoter binding factor [Homo sapiens]
gi|10441619|gb|AAG17124.1|AF190464_1 hepatocytic transcription factor B1F [Homo sapiens]
gi|3916048|gb|AAC78727.1| hepatocytic transcription factor [Homo sapiens]
gi|110002573|gb|AAI18653.1| Nuclear receptor subfamily 5, group A, member 2 [Homo sapiens]
gi|110002615|gb|AAI18572.1| Nuclear receptor subfamily 5, group A, member 2 [Homo sapiens]
gi|119611712|gb|EAW91306.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_b
[Homo sapiens]
gi|307685609|dbj|BAJ20735.1| nuclear receptor subfamily 5, group A, member 2 [synthetic
construct]
gi|325495525|gb|ADZ17368.1| liver nuclear receptor homolog-1 variant 2 [Homo sapiens]
Length = 495
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 307 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 361
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 362 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 421
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 422 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 481
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 482 YNNLLIEM 489
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 412 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 471
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 472 YYKHLNGDVPYNNLLIEM 489
>gi|355746061|gb|EHH50686.1| hypothetical protein EGM_01552 [Macaca fascicularis]
Length = 513
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 325 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 379
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 380 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 439
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 440 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 499
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 500 YNNLLIEM 507
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 430 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 489
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 490 YYKHLNGDVPYNNLLIEM 507
>gi|216409746|dbj|BAH02310.1| nuclear receptor subfamily 5, group A [Homo sapiens]
Length = 501
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 313 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 367
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 428 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 YNNLLIEM 495
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPYNNLLIEM 495
>gi|31376304|dbj|BAC77243.1| retinoid X receptor [Oreochromis niloticus]
Length = 267
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 78 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGILLA 136
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 137 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNPS 196
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD
Sbjct: 197 EVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTRH 256
Query: 270 QRLLGDM 276
L +M
Sbjct: 257 DTFLMEM 263
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 188 DAKGLSNPSEVELLRERVYASLEAYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 247
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD L +M
Sbjct: 248 FKLIGDTRHDTFLMEM 263
>gi|397505098|ref|XP_003823111.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 3
[Pan paniscus]
Length = 501
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 313 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 367
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 428 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 YNNLLIEM 495
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPYNNLLIEM 495
>gi|86620853|gb|AAP84609.2| steroidogenic factor 1 [Odontesthes bonariensis]
Length = 503
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 315 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSI-----LLVT 369
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++ R R L D E C+K ++LF+ + L +
Sbjct: 370 GQQVDYAMIASQAGATLNNLLSHAQELVTRLRSLQLDQREFVCLKFLVLFSLDVKNLENF 429
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 430 HLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 489
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 490 CNNLLIEM 497
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L
Sbjct: 420 SLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 479
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 480 YYKHLNGDVPCNNLLIEM 497
>gi|194385626|dbj|BAG65188.1| unnamed protein product [Homo sapiens]
Length = 501
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 313 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 367
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 428 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 YNNLLIEM 495
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPYNNLLIEM 495
>gi|395838915|ref|XP_003792351.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Otolemur garnettii]
Length = 541
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 353 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 407
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 408 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 467
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 468 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 528 YNNLLIEM 535
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 458 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 518 YYKHLNGDVPYNNLLIEM 535
>gi|395838917|ref|XP_003792352.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Otolemur garnettii]
Length = 495
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 307 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 361
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 362 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 421
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 422 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 481
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 482 YNNLLIEM 489
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 412 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 471
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 472 YYKHLNGDVPYNNLLIEM 489
>gi|3810967|dbj|BAA34092.1| FTZ-F1 related protein [Homo sapiens]
Length = 541
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 353 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 407
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 408 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 467
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 468 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 528 YNNLLIEM 535
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 458 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 518 YYKHLNGDVPYNNLLIEM 535
>gi|126352552|ref|NP_001075264.1| nuclear receptor subfamily 5 group A member 2 [Equus caballus]
gi|11493783|gb|AAG35649.1|AF203913_1 steroidogenic factor 2 [Equus caballus]
Length = 495
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 307 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 361
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 362 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 421
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 422 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 481
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 482 YNNLLIEM 489
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 412 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 471
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 472 YYKHLNGDVPYNNLLIEM 489
>gi|296230343|ref|XP_002760662.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Callithrix jacchus]
Length = 541
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 353 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 407
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 408 GQQVDYSMIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 467
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 468 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 528 YNNLLIEM 535
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 458 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 518 YYKHLNGDVPYNNLLIEM 535
>gi|449507916|ref|XP_002193005.2| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Taeniopygia guttata]
Length = 501
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 313 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----LLVT 367
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSVIASQAGATLNNLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENF 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 428 QLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 CNNLLIEM 495
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPCNNLLIEM 495
>gi|350420018|ref|XP_003492371.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 405
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 146/310 (47%), Gaps = 49/310 (15%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGIS-SVKIPPTVLYPPSGLKSPP 59
VQHERGPR + + L P ++PP + ++ +P + +P
Sbjct: 109 VQHERGPRNSTLR----RQMALYFKEPEVMASMVPPPTTALNLALPKPATESRVSVATPT 164
Query: 60 PPSHH---HP---SMFLATHQPPPHPGLLQI----LMSAEKCQETTARLLFMAVRWVRCL 109
P HH HP + + P GL + ++AE E ARLLF+ V W + L
Sbjct: 165 P--HHLLSHPVYCNSLAMSKIPLNMAGLPSVPLIPAVTAESICEQAARLLFLNVHWAKEL 222
Query: 110 APFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPP--DDVRVNN 167
A L DQL LL+ SW+ELFLL AQ D + L LPP + +
Sbjct: 223 AAGTGLVLEDQLTLLEFSWRELFLLAAAQILPTLDPTTL---------LPPAPHGLSLAV 273
Query: 168 EIKLIQEILARFRQLSPDGSECGCMKAVILF-----TPETPG---------------LVD 207
E+ +E LA F ++ D E C++A++LF + TP L D
Sbjct: 274 EVNRFRETLAGFHAMNLDQHEFACIRAIVLFKAGLDSEPTPSSRSSTGSASPSVGSRLRD 333
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDI 267
A V L+D AQ LG + G S RFG+LLL+LPSLR+V IE LFF+ TIG I
Sbjct: 334 AAAVARLRDGAQLALGQRLSG-ASLGALRFGKLLLLLPSLRSVSTHAIEELFFRRTIGII 392
Query: 268 PIQRLLGDMY 277
PI+R++ DMY
Sbjct: 393 PIERIICDMY 402
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 288 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 347
L DA V L+D AQ LG + G S RFG+LLL+LPSLR+V IE LFF+ TI
Sbjct: 331 LRDAAAVARLRDGAQLALGQRLSG-ASLGALRFGKLLLLLPSLRSVSTHAIEELFFRRTI 389
Query: 348 GDIPIQRLLGDMY 360
G IPI+R++ DMY
Sbjct: 390 GIIPIERIICDMY 402
>gi|157278393|ref|NP_001098298.1| LRH-1 [Oryzias latipes]
gi|74273322|gb|ABA01329.1| LRH-1 [Oryzias latipes]
Length = 523
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 335 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSI-----LLVT 389
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 390 GQQVDFGVIASQAGATLNNLLSHAQELVAKLRSLQLDQREFVCLKFLVLFSLDVKNLENF 449
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 450 HLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 509
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 510 CNNLLIEM 517
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L
Sbjct: 440 SLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 499
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 500 YYKHLNGDVPCNNLLIEM 517
>gi|184186086|ref|NP_001116968.1| orphan steroid hormone receptor 2 [Strongylocentrotus purpuratus]
gi|68566021|sp|Q26622.1|SHR2_STRPU RecName: Full=Orphan steroid hormone receptor 2; AltName:
Full=SpSHR2
gi|1054912|gb|AAB19174.1| orphan steroid hormone receptor 2 [Strongylocentrotus purpuratus]
gi|167859078|gb|ACA04474.1| Shr2 [Strongylocentrotus purpuratus]
Length = 583
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 14/232 (6%)
Query: 59 PPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKR 118
P S HH L T P P P L + E+ +RLLF+++ W R L FQ LS
Sbjct: 340 PMLSDHHMQFKLTT--PSPMPQFLNV----HYICESASRLLFLSMHWARSLPAFQVLSAD 393
Query: 119 DQLLLLQESWKELFLLHLAQWSIPWDLSLLINC-------EKARERLPPDDVR-VNNEIK 170
++Q+ W ELF L LAQ + LS ++ +++L D V+ V I
Sbjct: 394 THTSMVQKCWSELFTLGLAQCAQAMALSTILTAIVNHLQTSLQQDKLSADRVKAVMEHIW 453
Query: 171 LIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRY 230
+QE + +L D +E +K ++LF+P+ PGL + + +E Q+ A L DY Y
Sbjct: 454 KLQEFVTTTSKLDVDQTEFAYLKTIVLFSPDHPGLSNVRQIEKFQEMAISELHDYEAQTY 513
Query: 231 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
+ RF +LLL LP+LR + + +E LFF IG++ I ++ + ME +
Sbjct: 514 PSKLNRFSKLLLRLPTLRLLSPAIMEELFFAGLIGNVQIDSIIPYILRMETA 565
>gi|402857719|ref|XP_003893393.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Papio anubis]
Length = 541
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 353 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 407
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 408 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 467
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 468 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 528 YNNLLIEM 535
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 458 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 518 YYKHLNGDVPYNNLLIEM 535
>gi|451172094|ref|NP_001263393.1| nuclear receptor subfamily 5 group A member 2 isoform 3 [Homo
sapiens]
gi|194385660|dbj|BAG65205.1| unnamed protein product [Homo sapiens]
gi|221040206|dbj|BAH14884.1| unnamed protein product [Homo sapiens]
Length = 469
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 281 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 335
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 336 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 395
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 396 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 455
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 456 YNNLLIEM 463
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 386 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 445
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 446 YYKHLNGDVPYNNLLIEM 463
>gi|45545405|ref|NP_995582.1| nuclear receptor subfamily 5 group A member 2 isoform 1 [Homo
sapiens]
gi|114571710|ref|XP_001142695.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Pan troglodytes]
gi|397505094|ref|XP_003823109.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Pan paniscus]
gi|426333170|ref|XP_004028157.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Gorilla gorilla gorilla]
gi|7676156|sp|O00482.2|NR5A2_HUMAN RecName: Full=Nuclear receptor subfamily 5 group A member 2;
AltName: Full=Alpha-1-fetoprotein transcription factor;
AltName: Full=B1-binding factor; Short=hB1F; AltName:
Full=CYP7A promoter-binding factor; AltName:
Full=Hepatocytic transcription factor; AltName:
Full=Liver receptor homolog 1; Short=LRH-1
gi|4590402|gb|AAD26565.1|AF124247_1 hepatocytic transcription factor hB1F-2 [Homo sapiens]
gi|10441620|gb|AAG17125.1|AF190464_2 hepatocytic transcription factor isoform B1F-2 [Homo sapiens]
gi|119611714|gb|EAW91308.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_d
[Homo sapiens]
Length = 541
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 353 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 407
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 408 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 467
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 468 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 528 YNNLLIEM 535
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 458 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 518 YYKHLNGDVPYNNLLIEM 535
>gi|345803057|ref|XP_547371.3| PREDICTED: nuclear receptor subfamily 5 group A member 2 [Canis
lupus familiaris]
Length = 469
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 281 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 335
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 336 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 395
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 396 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 455
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 456 YNNLLIEM 463
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 386 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 445
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 446 YYKHLNGDVPYNNLLIEM 463
>gi|301757645|ref|XP_002914659.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Ailuropoda melanoleuca]
Length = 541
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 353 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 407
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 408 GQQVDYSVIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 467
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 468 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 528 YNNLLIEM 535
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 458 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 518 YYKHLNGDVPYNNLLIEM 535
>gi|374711679|gb|AEZ64360.1| retinoid X receptor isoform A long [Diploptera punctata]
Length = 449
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L F V W + + F +L DQ+LLL+ W EL + + S+ +++
Sbjct: 255 CQATNKQL-FQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLA 313
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++++ILF P+ GL +Q
Sbjct: 314 TGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIILFNPDVRGLKSSQ 373
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L +Y R Y +P RF +LLL LPSLR++ +E LFF IG++PI
Sbjct: 374 DVEVLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIGNVPI 433
Query: 270 QRLLGDM 276
L +M
Sbjct: 434 DEFLMEM 440
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL +Q VE+L+++ L +Y R Y +P RF +LLL LPSLR++ +E LFF
Sbjct: 368 GLKSSQDVEVLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRL 427
Query: 347 IGDIPIQRLLGDM 359
IG++PI L +M
Sbjct: 428 IGNVPIDEFLMEM 440
>gi|374711683|gb|AEZ64362.1| retinoid X receptor isoform B long [Diploptera punctata]
Length = 427
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L F V W + + F +L DQ+LLL+ W EL + + S+ +++
Sbjct: 233 CQATNKQL-FQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLA 291
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++++ILF P+ GL +Q
Sbjct: 292 TGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIILFNPDVRGLKSSQ 351
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L +Y R Y +P RF +LLL LPSLR++ +E LFF IG++PI
Sbjct: 352 DVEVLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIGNVPI 411
Query: 270 QRLLGDM 276
L +M
Sbjct: 412 DEFLMEM 418
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL +Q VE+L+++ L +Y R Y +P RF +LLL LPSLR++ +E LFF
Sbjct: 346 GLKSSQDVEVLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRL 405
Query: 347 IGDIPIQRLLGDM 359
IG++PI L +M
Sbjct: 406 IGNVPIDEFLMEM 418
>gi|281351212|gb|EFB26796.1| hypothetical protein PANDA_002579 [Ailuropoda melanoleuca]
Length = 520
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 332 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 386
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 387 GQQVDYSVIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 446
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 447 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 506
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 507 YNNLLIEM 514
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 437 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 496
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 497 YYKHLNGDVPYNNLLIEM 514
>gi|349804913|gb|AEQ17929.1| putative nuclear receptor subfamily 2 group f number 1
[Hymenochirus curtipes]
Length = 168
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF A+ W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 18 IMGIENICELAARLLFSAIEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 77
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 78 VAPLLAAAGLHAAPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 137
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ 233
GL D VE LQ+++QC L +YVR +Y Q
Sbjct: 138 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQ 168
>gi|185132297|ref|NP_001117708.1| FTZ-F1 related protein [Oncorhynchus mykiss]
gi|84469418|dbj|BAE71417.1| FTZ-F1 related protein [Oncorhynchus mykiss]
Length = 512
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 324 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIFRQVMHAKEGSI-----LLVT 378
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++ + R L D E C+K ++LF+ + L +
Sbjct: 379 GQQVDYVVIASQAGATLNNLMSHAQELVGKLRSLQLDQREFVCLKFLVLFSLDVKNLENF 438
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 439 HLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 498
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 499 CNNLLIEM 506
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L
Sbjct: 429 SLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 488
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 489 YYKHLNGDVPCNNLLIEM 506
>gi|195999876|ref|XP_002109806.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
gi|190587930|gb|EDV27972.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
Length = 352
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 99/186 (53%), Gaps = 5/186 (2%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTL-SKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
CQ ++ R+L+ V W L F + S DQ+ LL+ W ELF+L+ AQWS P ++
Sbjct: 163 CQ-SSMRILYSVVEWTVKLPYFSEMTSCTDQMTLLRSCWSELFILNAAQWSPPLNMFPYS 221
Query: 150 NCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
P + V + I L QE + + ++ D +E C+KA+ILF P+ GLV+
Sbjct: 222 TTSNFYLTHPQE---VMHHICLFQEAIVKLKKRFIDTTEFSCLKALILFNPDVRGLVNPN 278
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE +Q+ QC L +V+ +Y QP+RFG LLL L LR++ IE +FF + I
Sbjct: 279 YVEYIQENIQCALKQHVKSQYPDQPSRFGYLLLRLLMLRSISSKVIEEIFFTSVLCRRSI 338
Query: 270 QRLLGD 275
L +
Sbjct: 339 DIFLCE 344
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GLV+ VE +Q+ QC L +V+ +Y QP+RFG LLL L LR++ IE +FF
Sbjct: 273 GLVNPNYVEYIQENIQCALKQHVKSQYPDQPSRFGYLLLRLLMLRSISSKVIEEIFFTSV 332
Query: 347 IGDIPIQRLLGD 358
+ I L +
Sbjct: 333 LCRRSIDIFLCE 344
>gi|45384182|ref|NP_990409.1| nuclear receptor subfamily 5 group A member 2 [Gallus gallus]
gi|3334187|sp|O42101.1|NR5A2_CHICK RecName: Full=Nuclear receptor subfamily 5 group A member 2;
AltName: Full=FTF/LRH-1; AltName: Full=OR2.0
gi|2541858|dbj|BAA22838.1| FTF/LRH-1 [Gallus gallus]
Length = 501
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H+ + SI LL+
Sbjct: 313 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHVKEGSI-----LLVT 367
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSVIASQAGATLNNLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENF 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L+ K GD+P
Sbjct: 428 QLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYCKHLNGDVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 CNNLLIEM 495
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
+ K GD+P LL +M
Sbjct: 478 YCKHLNGDVPCNNLLIEM 495
>gi|47217403|emb|CAG00763.1| unnamed protein product [Tetraodon nigroviridis]
Length = 432
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 117/234 (50%), Gaps = 36/234 (15%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF + W R + F L +Q+ LL+ SW ELF+L+ AQ S+P
Sbjct: 198 VMGIDSICELAARLLFSTIEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSSLPIH 257
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
++ L+ + ER+ V +++++ Q+ + + +L D +E C+KA+ LF
Sbjct: 258 MAPLLAAAGFHSSPMSAERV----VSFMDQVRVFQDQVDKLNRLQVDTAEYSCLKAIALF 313
Query: 199 TP--------------------------ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR 232
+P + GL D VE LQ++AQ L +Y R +Y
Sbjct: 314 SPGVQSTACTRRLWERSRTTTSGLLSPTDACGLTDPAHVESLQEKAQVALTEYERMQYPG 373
Query: 233 QPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETP 286
QP RFGRLLL LP+LRAV + I +LFF +G PI+ L+ DM S P
Sbjct: 374 QPQRFGRLLLRLPALRAVPANLISQLFFMRLVGKTPIETLIRDMQLSGSSISWP 427
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ++AQ L +Y R +Y QP RFGRLLL LP+LRAV + I +LFF
Sbjct: 342 DACGLTDPAHVESLQEKAQVALTEYERMQYPGQPQRFGRLLLRLPALRAVPANLISQLFF 401
Query: 344 KETIGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 402 MRLVGKTPIETLIRDM 417
>gi|14994052|gb|AAK76400.1| retinoid X receptor beta [Scophthalmus maximus]
Length = 277
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 14/189 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L+ DQ++LL+ W EL + + SI +L+
Sbjct: 89 CQ-AADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGILLA 147
Query: 151 CEKARERLPPDDVRV--------NNEI-----KLIQEILARFRQLSPDGSECGCMKAVIL 197
R V N E+ +++ E++++ R + D +E GC++A+IL
Sbjct: 148 TGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIIL 207
Query: 198 FTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
F P+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E
Sbjct: 208 FNPDAKGLSNPSEVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEH 267
Query: 258 LFFKETIGD 266
LFF + IGD
Sbjct: 268 LFFFKLIGD 276
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 211 DAKGLSNPSEVELLRERVYASLESYCKQKYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 270
Query: 344 KETIGD 349
+ IGD
Sbjct: 271 FKLIGD 276
>gi|374711677|gb|AEZ64359.1| retinoid X receptor isoform A short [Diploptera punctata]
Length = 437
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L F V W + + F +L DQ+LLL+ W EL + + S+ +++
Sbjct: 243 CQATNKQL-FQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLA 301
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++++ILF P+ GL +Q
Sbjct: 302 TGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIILFNPDVRGLKSSQ 361
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L +Y R Y +P RF +LLL LPSLR++ +E LFF IG++PI
Sbjct: 362 DVEVLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIGNVPI 421
Query: 270 QRLLGDM 276
L +M
Sbjct: 422 DEFLMEM 428
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL +Q VE+L+++ L +Y R Y +P RF +LLL LPSLR++ +E LFF
Sbjct: 356 GLKSSQDVEVLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRL 415
Query: 347 IGDIPIQRLLGDM 359
IG++PI L +M
Sbjct: 416 IGNVPIDEFLMEM 428
>gi|6007621|gb|AAF00981.1|AF136372_1 RXR [Locusta migratoria]
Length = 389
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 108/198 (54%), Gaps = 3/198 (1%)
Query: 82 LQILMSAEKCQETTA--RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW 139
++ ++ AEK E A ++ + V W + + F +L DQ+LLL+ W EL + +
Sbjct: 185 VERILEAEKRVECKAENQVEYELVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHR 244
Query: 140 SIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF 198
S+ +++ R V +++ E++A+ R++ D +E GC+++VILF
Sbjct: 245 SVDVKDGIVLATGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRSVILF 304
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
PE GL AQ VE+L+++ L +Y R + +P RF +LLL LPSLR++ +E L
Sbjct: 305 NPEVRGLKSAQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPSLRSIGLKCLEHL 364
Query: 259 FFKETIGDIPIQRLLGDM 276
FF IGD+PI L +M
Sbjct: 365 FFFRLIGDVPIDTFLMEM 382
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL AQ VE+L+++ L +Y R + +P RF +LLL LPSLR++ +E LFF
Sbjct: 307 EVRGLKSAQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLLRLPSLRSIGLKCLEHLFF 366
Query: 344 KETIGDIPIQRLLGDM 359
IGD+PI L +M
Sbjct: 367 FRLIGDVPIDTFLMEM 382
>gi|194592436|gb|ACF76563.1| LRH-1 [Tachysurus fulvidraco]
Length = 500
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 312 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIFRQVIHTKEGSI-----LLVT 366
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ L +NN + QE++++ R L D E C+K ++LF+ + L +
Sbjct: 367 GQQMDYALIASQAGATLNNLLSRAQELVSKLRSLQLDQREFVCLKFLVLFSLDVKNLENF 426
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 427 HLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 486
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 487 CNNLLIEM 494
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L
Sbjct: 417 SLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 476
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 477 YYKHLNGDVPCNNLLIEM 494
>gi|449082861|dbj|BAM83567.1| ultraspiracle long isoform [Periplaneta americana]
Length = 441
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 3/185 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L F V W + + F +L DQ+LLL+ W EL + + S+ +++
Sbjct: 245 CQATNKQL-FQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLA 303
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETP-GLVDA 208
R V +++ E++A+ R++ D +E C+++VILF P+ GL
Sbjct: 304 TGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELVCLRSVILFNPDVVRGLKSR 363
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE+L+++ L +Y R + +P RF +LL LPSLR++ +E LFF IG++P
Sbjct: 364 QEVELLREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSLIGNVP 423
Query: 269 IQRLL 273
I
Sbjct: 424 IDEFF 428
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL Q VE+L+++ L +Y R + +P RF +LL LPSLR++ +E LFF
Sbjct: 359 GLKSRQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSL 418
Query: 347 IGDIPIQRLL 356
IG++PI
Sbjct: 419 IGNVPIDEFF 428
>gi|358251516|gb|AEU04707.1| retinoid X receptor alpha [Lateolabrax japonicus]
Length = 440
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 270 CQ-AADKQLFTLVEWAKRIPHFSELLLDDQVILLRAGWNELLIASFSHRSIAIKDGILLA 328
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 329 TGLHVHRNNAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPS 388
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 389 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DSKGLSNPSEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
>gi|344277228|ref|XP_003410405.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Loxodonta africana]
Length = 702
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 514 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 568
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 569 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 628
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 629 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 688
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 689 YNNLLIEM 696
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 619 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 678
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 679 YYKHLNGDVPYNNLLIEM 696
>gi|61680816|pdb|1YUC|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
gi|61680817|pdb|1YUC|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
gi|384482483|pdb|4DOR|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
gi|384482484|pdb|4DOR|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
Length = 255
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 67 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 121
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 122 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 181
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 182 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 241
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 242 YNNLLIEM 249
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 172 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 231
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 232 YYKHLNGDVPYNNLLIEM 249
>gi|296478912|tpg|DAA21027.1| TPA: nuclear receptor subfamily 5, group A, member 2 isoform 2 [Bos
taurus]
Length = 495
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 307 LFSIVEWARSSVFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 361
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 362 GQQVDYSVIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 421
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 422 QLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRALSMQAEEYLYYKHLNGDVP 481
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 482 YNNLLIEM 489
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 412 SLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRALSMQAEEYL 471
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 472 YYKHLNGDVPYNNLLIEM 489
>gi|403294674|ref|XP_003938294.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 3 [Saimiri boliviensis boliviensis]
Length = 501
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 13/187 (6%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI ++
Sbjct: 313 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVD 372
Query: 151 -CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
C A + +NN + QE++A+ R L D E C+K ++LF+ + L + Q
Sbjct: 373 YCMIASQA----GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQ 428
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 429 LVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPY 488
Query: 270 QRLLGDM 276
LL +M
Sbjct: 489 NNLLIEM 495
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPYNNLLIEM 495
>gi|374711681|gb|AEZ64361.1| retinoid X receptor isoform B short [Diploptera punctata]
Length = 415
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L F V W + + F +L DQ+LLL+ W EL + + S+ +++
Sbjct: 221 CQATNKQL-FQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLA 279
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++++ILF P+ GL +Q
Sbjct: 280 TGLTVHRNSAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIILFNPDVRGLKSSQ 339
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L +Y R Y +P RF +LLL LPSLR++ +E LFF IG++PI
Sbjct: 340 DVEVLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRLIGNVPI 399
Query: 270 QRLLGDM 276
L +M
Sbjct: 400 DEFLMEM 406
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL +Q VE+L+++ L +Y R Y +P RF +LLL LPSLR++ +E LFF
Sbjct: 334 GLKSSQDVEVLREKVYAALEEYTRTTYPDEPGRFAKLLLRLPSLRSISLKCLEYLFFFRL 393
Query: 347 IGDIPIQRLLGDM 359
IG++PI L +M
Sbjct: 394 IGNVPIDEFLMEM 406
>gi|332205882|ref|NP_001193745.1| nuclear receptor subfamily 5 group A member 2 [Bos taurus]
gi|296478911|tpg|DAA21026.1| TPA: nuclear receptor subfamily 5, group A, member 2 isoform 1 [Bos
taurus]
Length = 541
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 353 LFSIVEWARSSVFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 407
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 408 GQQVDYSVIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 467
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 468 QLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRALSMQAEEYLYYKHLNGDVP 527
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 528 YNNLLIEM 535
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 458 SLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRALSMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 518 YYKHLNGDVPYNNLLIEM 535
>gi|334321860|ref|XP_001377433.2| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Monodelphis domestica]
Length = 542
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 354 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 408
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 409 GQQVDYSVIASQAGATLNNLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENF 468
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 469 QLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 528
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 529 CNNLLIEM 536
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 459 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYL 518
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 519 YYKHLNGDVPCNNLLIEM 536
>gi|403294670|ref|XP_003938292.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 1 [Saimiri boliviensis boliviensis]
Length = 541
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 13/187 (6%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI ++
Sbjct: 353 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVD 412
Query: 151 -CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
C A + +NN + QE++A+ R L D E C+K ++LF+ + L + Q
Sbjct: 413 YCMIASQA----GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQ 468
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 469 LVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPY 528
Query: 270 QRLLGDM 276
LL +M
Sbjct: 529 NNLLIEM 535
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 458 SLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 518 YYKHLNGDVPYNNLLIEM 535
>gi|403294672|ref|XP_003938293.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 2 [Saimiri boliviensis boliviensis]
Length = 495
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 13/187 (6%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI ++
Sbjct: 307 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVD 366
Query: 151 -CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
C A + +NN + QE++A+ R L D E C+K ++LF+ + L + Q
Sbjct: 367 YCMIASQA----GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQ 422
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 423 LVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPY 482
Query: 270 QRLLGDM 276
LL +M
Sbjct: 483 NNLLIEM 489
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 412 SLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 471
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 472 YYKHLNGDVPYNNLLIEM 489
>gi|60892874|gb|AAX37292.1| nuclear receptor usp/RXR [Polistes fuscatus]
Length = 279
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F +L DQ+LLL+ W EL + + SI +++ R
Sbjct: 94 LFQLVTWAKHIPHFTSLPLEDQVLLLRGGWNELLIASFSHRSIGIKDGIVLATGITVYRS 153
Query: 159 PPDDVRVNNEIK-LIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V ++ E++ + R + D +E GC++++ILF P+ GL Q V +L+++
Sbjct: 154 SAQQAGVGTIFDHVLSELVTKMRDMKMDKTELGCLRSIILFNPDVRGLKSMQEVSLLREK 213
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L +Y R RF +LLL LPS+R++ +E LFF + IGD+PI + ++
Sbjct: 214 IYAALEEYTRVSCPNDSGRFAKLLLRLPSIRSIGLKCLEHLFFYKLIGDVPIDEFIMEL 272
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q V +L+++ L +Y R RF +LLL LPS+R++ +E LFF
Sbjct: 197 DVRGLKSMQEVSLLREKIYAALEEYTRVSCPNDSGRFAKLLLRLPSIRSIGLKCLEHLFF 256
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD+PI + ++
Sbjct: 257 YKLIGDVPIDEFIMEL 272
>gi|1947098|gb|AAD03155.1| alpha1-fetoprotein transcription factor [Homo sapiens]
Length = 500
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
+F V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 312 VFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 366
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 367 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 426
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 427 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 486
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 487 YNNLLIEM 494
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 417 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 476
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 477 YYKHLNGDVPYNNLLIEM 494
>gi|67463981|pdb|1ZDU|A Chain A, The Crystal Structure Of Human Liver Receptor Homologue-1
Length = 245
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 57 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 111
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 112 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 171
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 172 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 231
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 232 YNNLLIEM 239
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 162 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 221
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 222 YYKHLNGDVPYNNLLIEM 239
>gi|449082859|dbj|BAM83566.1| ultraspiracle, partial [Periplaneta americana]
Length = 414
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 3/185 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T + LF V W + + F +L DQ+LLL+ W EL + + S+ +++
Sbjct: 230 CQATN-KQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGIVLA 288
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETP-GLVDA 208
R V +++ E++A+ R++ D +E C+++VILF P+ GL
Sbjct: 289 TGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELVCLRSVILFNPDVVRGLKSR 348
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE+L+++ L +Y R + +P RF +LL LPSLR++ +E LFF IG++P
Sbjct: 349 QEVELLREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSLIGNVP 408
Query: 269 IQRLL 273
I
Sbjct: 409 IDEFF 413
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL Q VE+L+++ L +Y R + +P RF +LL LPSLR++ +E LFF
Sbjct: 344 GLKSRQEVELLREKVYAALEEYTRTTHPDEPGRFAKLLPSLPSLRSISLKCLEYLFFFSL 403
Query: 347 IGDIPIQRLL 356
IG++PI
Sbjct: 404 IGNVPIDEFF 413
>gi|73535702|pdb|1YOK|A Chain A, Crystal Structure Of Human Lrh-1 Bound With Tif-2 Peptide
And Phosphatidylglycerol
Length = 256
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 68 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 122
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 123 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 182
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 183 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 242
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 243 YNNLLIEM 250
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 173 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 232
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 233 YYKHLNGDVPYNNLLIEM 250
>gi|327200627|pdb|3PLZ|A Chain A, Human Lrh1 Lbd Bound To Gr470
gi|327200629|pdb|3PLZ|B Chain B, Human Lrh1 Lbd Bound To Gr470
Length = 257
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 69 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 123
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 124 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 183
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 184 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 243
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 244 YNNLLIEM 251
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 174 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 233
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 234 YYKHLNGDVPYNNLLIEM 251
>gi|384482487|pdb|4DOS|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Dlpc And A Fragment Of Tif-2
Length = 242
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 57 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 111
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 112 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 171
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 172 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 231
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 232 YNNLLIEM 239
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 162 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 221
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 222 YYKHLNGDVPYNNLLIEM 239
>gi|395531065|ref|XP_003767603.1| PREDICTED: nuclear receptor subfamily 5 group A member 2
[Sarcophilus harrisii]
Length = 502
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 314 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 368
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 369 GQQVDYSVIASQAGATLNNLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENF 428
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 429 QLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 488
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 489 CNNLLIEM 496
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 419 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYL 478
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 479 YYKHLNGDVPCNNLLIEM 496
>gi|440900736|gb|ELR51807.1| Nuclear receptor subfamily 5 group A member 2 [Bos grunniens mutus]
Length = 536
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 348 LFSIVEWARSSVFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 402
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 403 GQQVDYSVIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 462
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 463 QLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRALSMQAEEYLYYKHLNGDVP 522
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 523 YNNLLIEM 530
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 453 SLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRALSMQAEEYL 512
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 513 YYKHLNGDVPYNNLLIEM 530
>gi|3929579|gb|AAC80008.1| retinoic acid X receptor [Tripedalia cystophora]
Length = 435
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 100/182 (54%), Gaps = 3/182 (1%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC--EKARERLPP 160
W + L F+ LS DQ++LLQ SW EL + S +L++ R+ L
Sbjct: 255 AEWAKRLPHFRDLSIADQVVLLQWSWPELLIGGFCHRSCAVKDGILLSTGLHLTRDNLKK 314
Query: 161 DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
V + K+ E++ + +++ D +E GC++A++LF+P+ GL VE ++
Sbjct: 315 AGVGAIID-KIFSEVIEKMQEIQMDRAEWGCLRAIMLFSPDAKGLTAIDQVENYRELYTS 373
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
L D+V+ ++ QP RF +++L +P+L+++ +E L+F + IGD+P+ L DM ++
Sbjct: 374 TLEDHVKRKHPEQPDRFTKVILRIPALKSIGLQALEHLYFFKLIGDVPMDTFLLDMLEVD 433
Query: 281 KS 282
+S
Sbjct: 434 RS 435
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE ++ L D+V+ ++ QP RF +++L +P+L+++ +E L+F
Sbjct: 354 DAKGLTAIDQVENYRELYTSTLEDHVKRKHPEQPDRFTKVILRIPALKSIGLQALEHLYF 413
Query: 344 KETIGDIPIQRLLGDMYTMEKS 365
+ IGD+P+ L DM +++S
Sbjct: 414 FKLIGDVPMDTFLLDMLEVDRS 435
>gi|148694042|gb|EDL25989.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b [Mus
musculus]
Length = 303
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 71/116 (61%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S + ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D
Sbjct: 130 SLDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSC 189
Query: 147 LLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
L+ +A + E + +QE ++RFR L+ D +E C+KA++LF P T
Sbjct: 190 PLLAPPEASGSSQGRLALASAETRFLQETISRFRALAVDPTEFACLKALVLFKPGT 245
>gi|383856816|ref|XP_003703903.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 397
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 148/307 (48%), Gaps = 45/307 (14%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGIS-SVKIP---PTVLYPPSGLK 56
VQHERGPR + + L P +++PP + + +P P V
Sbjct: 103 VQHERGPRNSTLR----RQMALYFKEPEMMANMVPPPAAALDLVLPKPEPRVSVAAPAPH 158
Query: 57 SPPPPSHHHPSMFLATHQPPPHPGL--LQIL--MSAEKCQETTARLLFMAVRWVRCLAPF 112
P P + SM + + P G+ +Q++ ++AE E ARLLF+ V W R LA
Sbjct: 159 HPLPHPVYCNSMAM-SKIPVSMAGIPSVQVIPAITAESICEQAARLLFLNVHWARDLAAG 217
Query: 113 QTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD--DVRVNNEIK 170
L+ DQL LL+ SW+ELFLL AQ D + L LPP + + E+
Sbjct: 218 TNLALEDQLTLLESSWRELFLLAAAQILPTLDPTAL---------LPPGPQGLGLAVEVN 268
Query: 171 LIQEILARFRQLSPDGSECGCMKAVILF-------------------TPETPG-LVDAQP 210
+E LA F +S D E C++A++LF +P T L D
Sbjct: 269 RFKETLAGFHAMSLDQHEFACIRAIVLFKAGLDSEPLPSSRSSNGSASPSTGSRLRDPAA 328
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
V L+D AQ LG + G S RFG+LLL+LPSLR+V IE LFF+ TIG IPI+
Sbjct: 329 VARLRDGAQLALGQRLSG-ASFGALRFGKLLLLLPSLRSVSTHAIEELFFRRTIGIIPIE 387
Query: 271 RLLGDMY 277
R++ DMY
Sbjct: 388 RIICDMY 394
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 288 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 347
L D V L+D AQ LG + G S RFG+LLL+LPSLR+V IE LFF+ TI
Sbjct: 323 LRDPAAVARLRDGAQLALGQRLSG-ASFGALRFGKLLLLLPSLRSVSTHAIEELFFRRTI 381
Query: 348 GDIPIQRLLGDMY 360
G IPI+R++ DMY
Sbjct: 382 GIIPIERIICDMY 394
>gi|347360572|emb|CCA61269.1| retinoid X receptor, isoform L [Lithobius peregrinus]
Length = 326
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 3/179 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L+ + V W + + F L DQ+ LL+ W EL + + S+ S+++
Sbjct: 150 CQAANQQLIQL-VEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHRSVNVKDSIVLA 208
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A+ILF P GL +Q
Sbjct: 209 TGLQIHRTDAHSAGVGTIFDRVLTELVAKMREMKMDRTELGCLRAIILFNP-VKGLRSSQ 267
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+E L+++ L +Y + +Y +P RF +LLL LP+LR++ +E LFF + IGD P
Sbjct: 268 VIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTP 326
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 285 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 344
GL +Q +E L+++ L +Y + +Y +P RF +LLL LP+LR++ +E LFF
Sbjct: 260 VKGLRSSQVIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFF 319
Query: 345 ETIGDIP 351
+ IGD P
Sbjct: 320 KLIGDTP 326
>gi|451663|gb|AAA18357.1| Ftz-F1-related orphan receptor B, partial [Xenopus laevis]
Length = 468
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 280 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSI-----LLVT 334
Query: 151 CEKARERL--PPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + Q+++A+ R L D E C+K ++LF+ + L +
Sbjct: 335 GQQVDYSVIVTQAGATLNNLMSHAQDLVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENY 394
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY+ Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 395 QLVEGVQEQVNAALLDYIMCHYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 454
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 455 CNNLLIEM 462
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY+ Y +Q +FG+LLL LP +RA+ E L
Sbjct: 385 SLDVKNLENYQLVEGVQEQVNAALLDYIMCHYPQQTDKFGQLLLRLPEIRAISLQAEEYL 444
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 445 YYKHLNGDVPCNNLLIEM 462
>gi|347360574|emb|CCA61270.1| retinoid X receptor, isoform M [Lithobius peregrinus]
Length = 320
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 3/179 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L+ + V W + + F L DQ+ LL+ W EL + + S+ S+++
Sbjct: 144 CQAANQQLIQL-VEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHRSVNVKDSIVLA 202
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A+ILF P GL +Q
Sbjct: 203 TGLQIHRTDAHSAGVGTIFDRVLTELVAKMREMKMDRTELGCLRAIILFNP-VKGLRSSQ 261
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+E L+++ L +Y + +Y +P RF +LLL LP+LR++ +E LFF + IGD P
Sbjct: 262 VIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTP 320
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 285 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 344
GL +Q +E L+++ L +Y + +Y +P RF +LLL LP+LR++ +E LFF
Sbjct: 254 VKGLRSSQVIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFF 313
Query: 345 ETIGDIP 351
+ IGD P
Sbjct: 314 KLIGDTP 320
>gi|109018950|ref|XP_001110202.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 2 [Macaca mulatta]
Length = 495
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 307 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 361
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++ + R L D E C+K ++LF+ + L +
Sbjct: 362 GQQVDYSIIASQAGATLNNLMSHAQELVVKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 421
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 422 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 481
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 482 YNNLLIEM 489
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 412 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 471
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 472 YYKHLNGDVPYNNLLIEM 489
>gi|355558912|gb|EHH15692.1| hypothetical protein EGK_01814 [Macaca mulatta]
Length = 540
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 352 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 406
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++ + R L D E C+K ++LF+ + L +
Sbjct: 407 GQQVDYSIIASQAGATLNNLMSHAQELVVKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 466
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 467 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 526
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 527 YNNLLIEM 534
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 457 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 516
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 517 YYKHLNGDVPYNNLLIEM 534
>gi|410921720|ref|XP_003974331.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 2 [Takifugu rubripes]
Length = 525
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 337 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSI-----LLVT 391
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++ + R L D E C+K ++LF+ + L +
Sbjct: 392 GQQVDFGVIASQAGATLNNLLSHAQELVGKLRSLQLDQREFVCLKFLVLFSLDVKNLENF 451
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 452 HLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 511
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 512 CNNLLIEM 519
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L
Sbjct: 442 SLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 501
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 502 YYKHLNGDVPCNNLLIEM 519
>gi|451774918|gb|AGF50212.1| ultraspiracle protein [Polyrhachis vicina]
Length = 424
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
T + LF V W + + F +L DQ+LLL+ W EL + + SI S+++
Sbjct: 231 NATNKQLFQLVTWAKHIPHFTSLPVADQILLLKAGWNELLIAAFSYRSIEVKDSIVLATG 290
Query: 153 KARERLPPDDVRVNN--EIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP 210
R + + +++ E++++ R++ D +E GC++++ILF P+ GL Q
Sbjct: 291 TTVHRNSAQQAGLITIFDDRVLSELVSKMREMKMDRTELGCLRSIILFNPDVRGLKSIQE 350
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
V ML+++ L +Y R P RF +LLL LPS+R++ +E LFF + +G+
Sbjct: 351 VSMLREKIYAALEEYTRVSCPDDPGRFAKLLLRLPSIRSIGLKCLEHLFFFKLLGE 406
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL Q V ML+++ L +Y R P RF +LLL LPS+R++ +E LFF +
Sbjct: 344 GLKSIQEVSMLREKIYAALEEYTRVSCPDDPGRFAKLLLRLPSIRSIGLKCLEHLFFFKL 403
Query: 347 IGD 349
+G+
Sbjct: 404 LGE 406
>gi|410921718|ref|XP_003974330.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 1 [Takifugu rubripes]
Length = 525
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 337 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSI-----LLVT 391
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++ + R L D E C+K ++LF+ + L +
Sbjct: 392 GQQVDFGVIASQAGATLNNLLSHAQELVGKLRSLQLDQREFVCLKFLVLFSLDVKNLENF 451
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 452 HLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 511
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 512 CNNLLIEM 519
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + VE +Q+Q L DYV Y +Q +FG+LLL LP +RA+ E L
Sbjct: 442 SLDVKNLENFHLVESVQEQVNAALLDYVMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 501
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 502 YYKHLNGDVPCNNLLIEM 519
>gi|400270832|gb|AFP75245.1| nuclear receptor subfamily 5 group A member 2 [Tupaia belangeri]
Length = 541
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 353 LFSIVEWARSSVFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 407
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +N+ + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 408 GQQVDYSIIASQAGATLNSLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 467
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 468 QLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 528 YNNLLIEM 535
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 458 SLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 518 YYKHLNGDVPYNNLLIEM 535
>gi|109018948|ref|XP_001110281.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
isoform 3 [Macaca mulatta]
Length = 541
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 353 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 407
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++ + R L D E C+K ++LF+ + L +
Sbjct: 408 GQQVDYSIIASQAGATLNNLMSHAQELVVKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 467
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 468 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 528 YNNLLIEM 535
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 458 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 518 YYKHLNGDVPYNNLLIEM 535
>gi|389620951|gb|AFK93862.1| nuclear receptor subfamily 5 group A member 2 [Sus scrofa]
Length = 501
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 313 LFSIVEWARSSVFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 367
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSIIASQAGTTLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K D+P
Sbjct: 428 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNADVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 YNNLLIEM 495
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K D+P LL +M
Sbjct: 478 YYKHLNADVPYNNLLIEM 495
>gi|297281162|ref|XP_002802036.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Macaca mulatta]
Length = 469
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 281 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 335
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++ + R L D E C+K ++LF+ + L +
Sbjct: 336 GQQVDYSIIASQAGATLNNLMSHAQELVVKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 395
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 396 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 455
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 456 YNNLLIEM 463
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 386 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 445
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 446 YYKHLNGDVPYNNLLIEM 463
>gi|7416831|dbj|BAA94077.1| FTZ-F1 alpha [Glandirana rugosa]
Length = 501
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSI------PWD 144
LF V W R F+ L DQ+ LLQ W EL +L H + SI D
Sbjct: 313 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSILLVTGQQVD 372
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
S++++ +NN + QE++A+ R L D E C+K ++LF+ +
Sbjct: 373 FSVIVS---------QAGTTLNNLMSHAQELVAKLRSLQFDMREFVCLKFLVLFSLDVKN 423
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K
Sbjct: 424 LENFQLVEGVQEQINAALLDYTLCYYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLN 483
Query: 265 GDIPIQRLLGDM 276
GD+P LL +M
Sbjct: 484 GDVPCNNLLIEM 495
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKNLENFQLVEGVQEQINAALLDYTLCYYPQQTDKFGQLLLRLPEIRAISLQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPCNNLLIEM 495
>gi|538262|gb|AAA21479.1| ovalbumin upstream promoter transcription factor II, partial [Homo
sapiens]
Length = 351
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVR 227
GL D VE LQ+++QC L +YVR
Sbjct: 326 CGLSDVAHVESLQEKSQCALEEYVR 350
>gi|291402684|ref|XP_002717722.1| PREDICTED: nuclear receptor subfamily 5, group A, member 2
[Oryctolagus cuniculus]
Length = 541
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 353 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----YLVT 407
Query: 151 CEKARERL--PPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++ + R L D E C+K ++LF+ + L +
Sbjct: 408 GQQVDHSIIAAQAGATLNNLMSHAQELVVKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 467
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 468 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 527
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 528 YNNLLIEM 535
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 458 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 518 YYKHLNGDVPYNNLLIEM 535
>gi|7416833|dbj|BAA94078.1| FTZ-F1 beta [Glandirana rugosa]
Length = 469
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSI------PWD 144
LF V W R F+ L DQ+ LLQ W EL +L H + SI D
Sbjct: 281 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSILLVTGQQVD 340
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
S++++ +NN + QE++A+ R L D E C+K ++LF+ +
Sbjct: 341 FSVIVS---------QAGTTLNNLMSHAQELVAKLRSLQFDMREFVCLKFLVLFSLDVKN 391
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K
Sbjct: 392 LENFQLVEGVQEQINAALLDYTLCYYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLN 451
Query: 265 GDIPIQRLLGDM 276
GD+P LL +M
Sbjct: 452 GDVPCNNLLIEM 463
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 386 SLDVKNLENFQLVEGVQEQINAALLDYTLCYYPQQTDKFGQLLLRLPEIRAISLQAEEYL 445
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 446 YYKHLNGDVPCNNLLIEM 463
>gi|328782478|ref|XP_001121187.2| PREDICTED: protein tailless [Apis mellifera]
Length = 400
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 144/321 (44%), Gaps = 70/321 (21%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPP 60
VQHERGPR + + L P +++PP P L L P P
Sbjct: 103 VQHERGPRNSTLR----RQMALYFKEPEMMANMVPP--------PAAAL----DLALPKP 146
Query: 61 PSHHHPSMF----------------LATHQPP------PHPGLLQILMSAEKCQETTARL 98
P+ S+ +A + P P L+ ++AE E ARL
Sbjct: 147 PNEPRVSVPAPAPHHPLPHPVYCNNMAMSKIPVNVAGLPTLPLIPAAITAESICEQAARL 206
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF+ V W R LA L DQL LL+ SW+ELFLL AQ D + L L
Sbjct: 207 LFLNVHWARDLAVGTNLVIEDQLTLLESSWRELFLLAAAQILPTLDPTPL---------L 257
Query: 159 PPD--DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF------------------ 198
PP + + E+ +E LA F +S D E C++A++LF
Sbjct: 258 PPGPQGLGLAVEVTRFRETLAGFHAMSLDQHEYACIRAIVLFKAGLDSEPLPSSRSSNGS 317
Query: 199 -TPETPG-LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIE 256
+P T L DA V L+D AQ LG + G S RFG+LLL+LPSLR+V IE
Sbjct: 318 TSPNTGSRLRDAAAVARLRDGAQLALGQRLSG-ASFGALRFGKLLLLLPSLRSVSAHAIE 376
Query: 257 RLFFKETIGDIPIQRLLGDMY 277
LFF+ TIG IPI+R++ DMY
Sbjct: 377 ELFFRRTIGIIPIERIICDMY 397
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 288 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 347
L DA V L+D AQ LG + G S RFG+LLL+LPSLR+V IE LFF+ TI
Sbjct: 326 LRDAAAVARLRDGAQLALGQRLSG-ASFGALRFGKLLLLLPSLRSVSAHAIEELFFRRTI 384
Query: 348 GDIPIQRLLGDMY 360
G IPI+R++ DMY
Sbjct: 385 GIIPIERIICDMY 397
>gi|347360576|emb|CCA61271.1| retinoid X receptor, isoform S [Lithobius peregrinus]
Length = 305
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 3/179 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L+ + V W + + F L DQ+ LL+ W EL + + S+ S+++
Sbjct: 129 CQAANQQLIQL-VEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHRSVNVKDSIVLA 187
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A+ILF P GL +Q
Sbjct: 188 TGLQIHRTDAHSAGVGTIFDRVLTELVAKMREMKMDRTELGCLRAIILFNP-VKGLRSSQ 246
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
+E L+++ L +Y + +Y +P RF +LLL LP+LR++ +E LFF + IGD P
Sbjct: 247 VIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTP 305
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 285 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 344
GL +Q +E L+++ L +Y + +Y +P RF +LLL LP+LR++ +E LFF
Sbjct: 239 VKGLRSSQVIESLRERVYAALEEYCKQQYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFF 298
Query: 345 ETIGDIP 351
+ IGD P
Sbjct: 299 KLIGDTP 305
>gi|58331857|ref|NP_001011100.1| nuclear receptor subfamily 5, group A, member 2 [Xenopus (Silurana)
tropicalis]
gi|54038250|gb|AAH84495.1| nuclear receptor subfamily 5, group A, member 2 [Xenopus (Silurana)
tropicalis]
Length = 501
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 313 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSI-----LLVT 367
Query: 151 CEKARERL--PPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + Q+++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSVIVTQAGATLNNLMSHAQDLVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENY 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 428 QLVEGVQEQINAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 CNNLLIEM 495
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKNLENYQLVEGVQEQINAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPCNNLLIEM 495
>gi|444717055|gb|ELW57891.1| Nuclear receptor subfamily 5 group A member 2 [Tupaia chinensis]
Length = 583
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 313 LFSIVEWARSSVFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 367
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +N+ + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSIIASQAGATLNSLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 428 QLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 YNNLLIEM 495
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKNLENFQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPYNNLLIEM 495
>gi|345306365|ref|XP_001505652.2| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Ornithorhynchus anatinus]
Length = 659
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 471 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 525
Query: 151 CEKARERL--PPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +N+ + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 526 GQQVDYAVIAAQAGATLNSLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENF 585
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY+ Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 586 QLVEGVQEQVNAALLDYIMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 645
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 646 CNNLLIEM 653
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY+ Y +Q +FG+LLL LP +RA+ E L
Sbjct: 576 SLDVKNLENFQLVEGVQEQVNAALLDYIMCNYPQQTDKFGQLLLRLPEIRAISMQAEEYL 635
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 636 YYKHLNGDVPCNNLLIEM 653
>gi|327277808|ref|XP_003223655.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Anolis carolinensis]
Length = 855
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 667 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----LLVT 721
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 722 GQQVDYSVIASQAGATLNNLMSHAQELVAKLRSLQFDLREFVCLKFLVLFSLDVKNLENF 781
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +R + E L++K GD+P
Sbjct: 782 QLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRGISMQAEEYLYYKHLNGDVP 841
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 842 CNNLLIEM 849
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +R + E L
Sbjct: 772 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRGISMQAEEYL 831
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 832 YYKHLNGDVPCNNLLIEM 849
>gi|148229587|ref|NP_001081185.1| nuclear receptor subfamily 5, group A, member 2 [Xenopus laevis]
gi|451661|gb|AAA18356.1| Ftz-F1-related orphan receptor A [Xenopus laevis]
Length = 501
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 313 LFSIVEWARSSIFFRDLKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSI-----LLVT 367
Query: 151 CEKARERL--PPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + Q+++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSVIVTQAGATLNNLMSHAQDLVAKLRSLQFDLREFVCLKFLVLFSLDVKTLENY 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 428 QLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 CNNLLIEM 495
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKTLENYQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPCNNLLIEM 495
>gi|213626636|gb|AAI69770.1| Xff1rashort protein [Xenopus laevis]
Length = 501
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 313 LFSIVEWARSSIFFRDLKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSI-----LLVT 367
Query: 151 CEKARERL--PPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + Q+++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSVIVTQAGATLNNLMSHAQDLVAKLRSLQFDLREFVCLKFLVLFSLDVKTLENY 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 428 QLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 CNNLLIEM 495
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKTLENYQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPCNNLLIEM 495
>gi|213623458|gb|AAI69772.1| FTZ-F1-related nuclear orphan receptor variant [Xenopus laevis]
Length = 501
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI LL+
Sbjct: 313 LFSIVEWARSSIFFRDLKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSI-----LLVT 367
Query: 151 CEKARERL--PPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + Q+++A+ R L D E C+K ++LF+ + L +
Sbjct: 368 GQQVDYSVIVTQAGATLNNLMSHAQDLVAKLRSLQFDLREFVCLKFLVLFSLDVKTLENY 427
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 428 QLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLNGDVP 487
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 488 CNNLLIEM 495
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 418 SLDVKTLENYQLVEGVQEQVNAALLDYTMCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 478 YYKHLNGDVPCNNLLIEM 495
>gi|357575250|gb|AET85184.1| nuclear receptor subfamily 5 group A member 2 variant 2 [Cricetulus
barabensis]
Length = 501
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 92/183 (50%), Gaps = 5/183 (2%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS---LLINCEKA- 154
LF V W R F+ L DQ+ LLQ SW EL +L + + LLI +
Sbjct: 313 LFSIVEWARSSIFFRELKVDDQMKLLQNSWSELLILDHIYRQVVYGKEGSPLLITGQHVD 372
Query: 155 -RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEM 213
+ V ++N + QE++ RFR L D E C+K ++LF+ + + + Q VE
Sbjct: 373 YASIVSEAGVTLSNLVSHSQELVLRFRSLQFDHREFVCLKFLVLFSLDVKNIENFQLVEG 432
Query: 214 LQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLL 273
+Q+Q L +Y Y +Q ++G+LLL LP +RA+ E L+++ GD+P LL
Sbjct: 433 VQEQVNTALLEYTVCNYPQQTEKYGQLLLRLPEIRAISVQAEEYLYYRHLNGDVPYNNLL 492
Query: 274 GDM 276
+M
Sbjct: 493 IEM 495
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + + + Q VE +Q+Q L +Y Y +Q ++G+LLL LP +RA+ E L
Sbjct: 418 SLDVKNIENFQLVEGVQEQVNTALLEYTVCNYPQQTEKYGQLLLRLPEIRAISVQAEEYL 477
Query: 342 FFKETIGDIPIQRLLGDM 359
+++ GD+P LL +M
Sbjct: 478 YYRHLNGDVPYNNLLIEM 495
>gi|112820307|gb|ABI24015.1| Rxr2 [Oikopleura dioica]
Length = 300
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 92/164 (56%), Gaps = 1/164 (0%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F+TL D++ L+Q +W E+ + +A S+ ++ LLI + R
Sbjct: 137 IEWTKMIPQFETLKTDDRVYLVQSAWNEITIADIAHRSMEFEDKLLIGKNEILTRGQATS 196
Query: 163 VRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
V+ ++I E++ + +++ D +E GC+KA+IL+ P+ L D VE L+++
Sbjct: 197 TNVDIIFGRVITELVYKMKEMKLDRTELGCLKAIILYNPDVKQLQDPILVEDLREKVYAS 256
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
L Y + +Y QP RF +LLL LP+LR++ +E +F +T+G
Sbjct: 257 LEAYSKQKYPEQPGRFAKLLLRLPALRSIGLKCLESMFLFKTVG 300
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 348
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E +F +T+G
Sbjct: 246 VEDLREKVYASLEAYSKQKYPEQPGRFAKLLLRLPALRSIGLKCLESMFLFKTVG 300
>gi|350537337|ref|NP_001233209.1| nuclear receptor subfamily 5 group A member 2 [Ovis aries]
gi|339958758|gb|AEK25127.1| nuclear receptor subfamily 5 group A member 2 [Ovis aries]
gi|353025422|gb|AEQ61833.1| liver receptor-like protein [Ovis aries]
Length = 495
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 307 LFSIVEWARSSVFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 361
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +++ + QE++A+ R L D E C+K ++LF+ + L ++
Sbjct: 362 GQQVDYSVIASQAGATLSSLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENS 421
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 422 QLVEGVQEQVNAALLDYTVCNYPQQAEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 481
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 482 YNNLLIEM 489
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L ++Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 412 SLDVKNLENSQLVEGVQEQVNAALLDYTVCNYPQQAEKFGQLLLRLPEIRAISMQAEEYL 471
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 472 YYKHLNGDVPYNNLLIEM 489
>gi|57965690|ref|XP_561285.1| Anopheles gambiae str. PEST AGAP012921-PA [Anopheles gambiae str.
PEST]
gi|55247184|gb|EAL42340.1| AGAP012921-PA [Anopheles gambiae str. PEST]
Length = 96
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 58/69 (84%)
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
MLQDQAQC+L ++VR RY RQPTRFGRLLL+LP LR +R +TIE LFFKETIG +PI RL
Sbjct: 1 MLQDQAQCVLSEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETIGTVPISRL 60
Query: 273 LGDMYTMEK 281
L DMY MEK
Sbjct: 61 LIDMYQMEK 69
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 58/69 (84%)
Query: 296 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 355
MLQDQAQC+L ++VR RY RQPTRFGRLLL+LP LR +R +TIE LFFKETIG +PI RL
Sbjct: 1 MLQDQAQCVLSEHVRVRYPRQPTRFGRLLLLLPLLRTIRSTTIETLFFKETIGTVPISRL 60
Query: 356 LGDMYTMEK 364
L DMY MEK
Sbjct: 61 LIDMYQMEK 69
>gi|297522148|gb|ADI44343.1| tailless protein [Clogmia albipunctata]
Length = 437
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 141/331 (42%), Gaps = 51/331 (15%)
Query: 1 VQHERGPRKPKI--------HNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPP 52
VQHERGPR + N + L+ + P I+ IPP P
Sbjct: 106 VQHERGPRNSTMLRKRISLMMNPDPMVANLQSMEQEYQMSRSLPVSINPTYIPP----PH 161
Query: 53 SGLKSPPP---PSHHHPSMFLATHQPPPHPGLLQ-----ILMSAEKCQETTARLLFMAVR 104
L P P S+ +T PPP+ + + S K +E+ A + +
Sbjct: 162 VALDLSIPRISPGAMASSILNST--PPPYMPIPTMPPTPLFASVIKIRESAANAVLQNLD 219
Query: 105 WVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK----------A 154
W++ + F L + DQ +L++ESW+ELF+L AQ+ P + L++
Sbjct: 220 WLKNIRAFTELPRSDQYILVEESWRELFILSSAQYMAPINFHQLLHAYALLDSYNINLVG 279
Query: 155 RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ----- 209
R R+ P + +E++ Q+IL + QL D E ++ +ILF VD
Sbjct: 280 RTRVSP--LNFFSEVENFQKILNKMSQLRIDYDEFEYLREIILFKTNPDKNVDTSDFSTD 337
Query: 210 ----------PVEMLQDQAQCILGDYVRGRYSRQPT-RFGRLLLMLPSLRAVRQSTIERL 258
+ LQ+ A+ L +++ +Y +P RF L L+LP L V +TI L
Sbjct: 338 DGRSTVQELDKIRKLQENARNKLANHISEKYPIEPQLRFRSLELILPELNFVSNNTIGEL 397
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETPGLV 289
FF + I + + DMY+ E+ Y P ++
Sbjct: 398 FFNSDVRIAGIGKTIADMYS-ERKYFNPRVI 427
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPT-RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 352
+ LQ+ A+ L +++ +Y +P RF L L+LP L V +TI LFF + I
Sbjct: 349 IRKLQENARNKLANHISEKYPIEPQLRFRSLELILPELNFVSNNTIGELFFNSDVRIAGI 408
Query: 353 QRLLGDMYTMEKSYG 367
+ + DMY+ K +
Sbjct: 409 GKTIADMYSERKYFN 423
>gi|3098334|gb|AAC15588.1| retinoid X receptor [Amblyomma americanum]
Length = 400
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 3/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L V+W + + F+ L D+++LL+ W EL + + S+ +++
Sbjct: 209 CQ-AADRQLHQLVQWAKHIPHFEELPLEDRMVLLKAGWNELLIAAFSHRSVDVRDGIVLA 267
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+R V +++ E++A+ R++ D +E GC+ AV+LF PE GL
Sbjct: 268 TGLVVQRHSAHGAGVGAIFDRVLTELVAKMREMKMDRTELGCLLAVVLFNPEAKGLRTC- 326
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
P + ++ L ++ R +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 327 PSGGPEGESVSALEEHCRQQYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 386
Query: 270 QRLLGDM 276
L M
Sbjct: 387 DNFLLSM 393
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 305 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 359
L ++ R +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L M
Sbjct: 339 LEEHCRQQYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDNFLLSM 393
>gi|28628006|gb|AAO18151.1| USP-RXR [Lithobius forficatus]
Length = 305
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 3/177 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L+ + V W + + F L DQ+ LL+ W EL + + S+ S+++
Sbjct: 130 CQAANQQLIQL-VEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHRSVNVKDSIVLA 188
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A+ILF P GL +Q
Sbjct: 189 TGLQIHRTDAHSAGVGTIFDRVLTELVAKMREMKMDRTELGCLRAIILFNP-VKGLRSSQ 247
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
+E L+++ L +Y + Y +P RF +LLL LP+LR++ +E LFF + IGD
Sbjct: 248 VIESLRERVYATLEEYCKQHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 304
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 285 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 344
GL +Q +E L+++ L +Y + Y +P RF +LLL LP+LR++ +E LFF
Sbjct: 240 VKGLRSSQVIESLRERVYATLEEYCKQHYPDEPGRFAKLLLRLPALRSIGLKCLEHLFFF 299
Query: 345 ETIGD 349
+ IGD
Sbjct: 300 KLIGD 304
>gi|4337458|gb|AAD18132.1| retinoid X receptor beta [Sus scrofa domesticus]
Length = 187
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 2/175 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 14 CQAADKQL-FTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 72
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 73 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 132
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + I
Sbjct: 133 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLI 187
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 124 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 183
Query: 344 KETI 347
+ I
Sbjct: 184 FKLI 187
>gi|70799020|gb|AAZ09200.1| retinoid X receptor alpha protein [Bos taurus]
Length = 152
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 69/107 (64%)
Query: 170 KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGR 229
+++ E++++ R + D +E GC++A++LF P++ GL + VE L+++ LG Y + +
Sbjct: 38 RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLGAYCKHK 97
Query: 230 YSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
Y QP RF +LLL LP+LR+V +E LFF + IGD PI L +M
Sbjct: 98 YPEQPGRFAKLLLRLPALRSVGLKCLEHLFFFKLIGDTPIDTFLMEM 144
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ LG Y + +Y QP RF +LLL LP+LR+V +E LFF
Sbjct: 69 DSKGLSNPAEVEALREKVYASLGAYCKHKYPEQPGRFAKLLLRLPALRSVGLKCLEHLFF 128
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 129 FKLIGDTPIDTFLMEM 144
>gi|403276111|ref|XP_003929757.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Saimiri
boliviensis boliviensis]
Length = 470
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 115/235 (48%), Gaps = 18/235 (7%)
Query: 56 KSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTL 115
K P S H + L P P P L + E+ +RLLF+++ W + FQ L
Sbjct: 231 KEGPLLSDSHVAFRLT--MPSPMPEYLNV----HYIGESASRLLFLSMHWALSIPSFQAL 284
Query: 116 SKRDQLLLLQESWKELFLLHLAQ-W---SIPWDLSLLINCEKARERLPPDDVRVN----- 166
+ + +LL++ W ELF L LAQ W ++ L+ +NC L D + +
Sbjct: 285 GQENSILLVKAYWNELFTLGLAQCWQVMNVATILATFVNC--LHNSLQQDKMSIERRKLL 342
Query: 167 -NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDY 225
+ I +QE +L DG E +KA++LF+P+ PGL + + +E Q++A DY
Sbjct: 343 MDHIFRLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPGLENMEQIEKFQEKAYVEFQDY 402
Query: 226 VRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
+ Y R RLLL LP+LR + + E LFFK IG+I I ++ + ME
Sbjct: 403 ITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKME 457
>gi|147899545|ref|NP_001084198.1| nuclear receptor subfamily 2 group C member 1-A [Xenopus laevis]
gi|82201033|sp|Q6GN21.1|N2C1A_XENLA RecName: Full=Nuclear receptor subfamily 2 group C member 1-A;
AltName: Full=Developmental orphan receptor 2-A;
Short=DOR2-A; Short=xDOR2-A; AltName: Full=Orphan
nuclear receptor TR2-A; AltName: Full=Testicular
receptor 2-A
gi|49118996|gb|AAH73700.1| DOR2 protein [Xenopus laevis]
Length = 637
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E + +RLLF+++ W R + FQ+L + + + L++ W ELF L
Sbjct: 415 PSPMPEYLNVHYICE----SASRLLFLSMHWARSIPSFQSLGQENSISLVKACWNELFSL 470
Query: 135 HLAQWS----IPWDLSLLIN---CEKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDG 186
LAQ S + L+ +N ++L D V+ V + I +QE +L DG
Sbjct: 471 GLAQCSQVMNVETILAAFVNHLQNSMQHDKLSSDKVKLVTDHIFKLQEFCNSMVKLCVDG 530
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA+ LF+P+ PGL + +E LQ++A DYV Y R RLLL LP+
Sbjct: 531 YEYAYLKAIALFSPDHPGLENVSHIEKLQEKAYMEFQDYVTKTYPEDTYRLSRLLLRLPA 590
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
LR + + E LFF IG++ I ++ + ME S
Sbjct: 591 LRLMNAAITEELFFAGLIGNVQIDSIIPYILRMETS 626
>gi|391333770|ref|XP_003741283.1| PREDICTED: protein tailless-like [Metaseiulus occidentalis]
Length = 411
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 140/311 (45%), Gaps = 54/311 (17%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPHNPHHSPDLLPPN----GISSV--------KIPPTV 48
VQHERGPR + K + + +PPN +SS+ + P V
Sbjct: 117 VQHERGPRNSTLRRQAAMYLK-----EVMAAEYMPPNRNDGAVSSLPLSLPMQEHLSPDV 171
Query: 49 --LYPPS------GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLF 100
YP + L P P + L PPP +++ + E A +LF
Sbjct: 172 KQAYPTTPFPLIMQLARLPAP------ISLPVMTPPPVTLSRPPVLTGQALCELAAHILF 225
Query: 101 MAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPP 160
+ V +++ L +L DQL LL+ SW ELFL+ Q + ++++ + +++ P
Sbjct: 226 LNVSYLKTLTQLSSLPLSDQLFLLESSWSELFLITATQMGLCLRSAMMLLPDTTKDKWTP 285
Query: 161 DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEM------- 213
++ NE+ +Q + RQ + D +EC +K V LF+P P + A P+ +
Sbjct: 286 QEI---NEMISVQ---TQLRQQALDDTECLLLKTVTLFSP--PSTLRASPLSVSTRRLHE 337
Query: 214 -------LQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
L+D + + +R Y Q R L M+P LR V + I+ LFF++TIGD
Sbjct: 338 VQAVQRHLEDVKRTLQSHDIRT-YPNQIRRADSALDMVPLLRTVSREFIQDLFFRKTIGD 396
Query: 267 IPIQRLLGDMY 277
I+RLL DMY
Sbjct: 397 AAIERLLCDMY 407
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 282 SYETPGLVDAQPVEM-LQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 340
S T L + Q V+ L+D + + +R Y Q R L M+P LR V + I+
Sbjct: 329 SVSTRRLHEVQAVQRHLEDVKRTLQSHDIRT-YPNQIRRADSALDMVPLLRTVSREFIQD 387
Query: 341 LFFKETIGDIPIQRLLGDMY 360
LFF++TIGD I+RLL DMY
Sbjct: 388 LFFRKTIGDAAIERLLCDMY 407
>gi|60892853|gb|AAX37291.1| nuclear receptor usp/RXR [Xenos pecki]
Length = 405
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 97/187 (51%), Gaps = 4/187 (2%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L F + W + + F +L DQ++LL+ SW EL + + + SI ++++
Sbjct: 213 CQATNTQL-FQIIDWAKHIPYFTSLPVADQVVLLKASWNELLITNFSYRSIDARDAIVLA 271
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
A + + +++ E++ + R++ D +E GC+K + LF E GL AQ
Sbjct: 272 TGYAVNKNSAHQAGLEAIFDRVLTEVVYKMREIRMDKTEIGCLKCITLFNSEIKGLKSAQ 331
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ C+ ++ R Y + RF +LLL LP +R++ + LFF + +PI
Sbjct: 332 EVESLREKVFCVPDEHTRINYPNEQGRFAKLLLRLPPVRSIALKCTDYLFFCRLV--LPI 389
Query: 270 QRLLGDM 276
L +M
Sbjct: 390 DAFLREM 396
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL AQ VE L+++ C+ ++ R Y + RF +LLL LP +R++ + LFF
Sbjct: 323 EIKGLKSAQEVESLREKVFCVPDEHTRINYPNEQGRFAKLLLRLPPVRSIALKCTDYLFF 382
Query: 344 KETIGDIPIQRLLGDM 359
+ +PI L +M
Sbjct: 383 CRLV--LPIDAFLREM 396
>gi|357575248|gb|AET85183.1| nuclear receptor subfamily 5 group A member 2 [Cricetulus
barabensis]
Length = 541
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 5/183 (2%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS---LLINCEKA- 154
LF V W R F+ L DQ+ LLQ SW EL +L + + LLI +
Sbjct: 353 LFSIVEWARSSIFFRELKVDDQMKLLQNSWSELLILDHIYRQVVYGKEGSLLLITGQHVD 412
Query: 155 -RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEM 213
+ V ++N + QE++ RFR L D E C+K ++ F+ + + + Q VE
Sbjct: 413 YASIVSEAGVTLSNLVSHSQELVLRFRSLQFDHREFVCLKFLVRFSLDVKNIENFQLVEG 472
Query: 214 LQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLL 273
+Q+Q L +Y Y +Q ++G+LLL LP +RA+ E L+++ GD+P LL
Sbjct: 473 VQEQVNTALLEYTVCNYPQQTEKYGQLLLRLPEIRAISMQAEEYLYYRHLNGDVPYNNLL 532
Query: 274 GDM 276
+M
Sbjct: 533 IEM 535
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + + + Q VE +Q+Q L +Y Y +Q ++G+LLL LP +RA+ E L
Sbjct: 458 SLDVKNIENFQLVEGVQEQVNTALLEYTVCNYPQQTEKYGQLLLRLPEIRAISMQAEEYL 517
Query: 342 FFKETIGDIPIQRLLGDM 359
+++ GD+P LL +M
Sbjct: 518 YYRHLNGDVPYNNLLIEM 535
>gi|443702947|gb|ELU00770.1| hypothetical protein CAPTEDRAFT_224222 [Capitella teleta]
Length = 747
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 30/234 (12%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E+ +RLLF+++ W R ++ FQ L + Q+ L++ W ELF L
Sbjct: 445 PSPMPAYLNV----HYICESASRLLFLSMHWARAISAFQLLGQDTQIELVRRCWSELFTL 500
Query: 135 HLAQWSIPWDLSLLI-------------------NCEKARERLPPDDVRVNNEIKLI--- 172
LAQ + +LS ++ + E+A + D ++ IK++
Sbjct: 501 GLAQCANVMNLSTILAAILNHLQTSQQDGGQTEGSSERAGLTMSSTDKSLSPRIKMVTDT 560
Query: 173 ----QEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRG 228
QE ++ +L D +E +KA++LF+P+ + +E Q+++ L DYV
Sbjct: 561 ILQLQEFISTLNRLQVDETEFAYLKAIVLFSPDHANQQTVRQIEKFQEKSHHDLQDYVIH 620
Query: 229 RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
Y+ Q R G+LLL LP+LR + + +E LFF IG++ I ++ + ME +
Sbjct: 621 SYTSQADRLGKLLLRLPALRLLPPAVMEELFFAGLIGNVQIDSIIPYILRMETA 674
>gi|239735516|ref|NP_001155140.1| ultraspiracle [Acyrthosiphon pisum]
Length = 433
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 4/193 (2%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L+ + V W + + F+ L DQ+LLL+ W EL + + SI +++
Sbjct: 236 CQATDKQLIQL-VEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFSHRSISVKDGIVLA 294
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+R V +++ E++A+ R + D +E GC++ +ILF P + GL
Sbjct: 295 TGLTVDRDSAHQAGVEAIFDRVLTELVAKMRDMGMDRTELGCLRTIILFNPGSKGLQSVN 354
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+D+ L +Y R + +P RF +LLL LPSLR++ +E LFF + IGD PI
Sbjct: 355 EVEVLRDKVYVALEEYCRTTHPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFYKLIGDSPI 414
Query: 270 QRLLGDMYTMEKS 282
L M +E S
Sbjct: 415 DTFL--MEVLESS 425
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 285 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 344
+ GL VE+L+D+ L +Y R + +P RF +LLL LPSLR++ +E LFF
Sbjct: 347 SKGLQSVNEVEVLRDKVYVALEEYCRTTHPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFY 406
Query: 345 ETIGDIPIQRLLGDMYTMEKS 365
+ IGD PI L M +E S
Sbjct: 407 KLIGDSPIDTFL--MEVLESS 425
>gi|238558272|gb|ACR45970.1| ultraspiracle, partial [Acyrthosiphon pisum]
Length = 428
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 4/193 (2%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L+ + V W + + F+ L DQ+LLL+ W EL + + SI +++
Sbjct: 236 CQATDKQLIQL-VEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFSHRSISVKDGIVLA 294
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+R V +++ E++A+ R + D +E GC++ +ILF P + GL
Sbjct: 295 TGLTVDRDSAHQAGVEAIFDRVLTELVAKMRDMGMDRTELGCLRTIILFNPGSKGLQSVN 354
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+D+ L +Y R + +P RF +LLL LPSLR++ +E LFF + IGD PI
Sbjct: 355 EVEVLRDKVYVALEEYCRTTHPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFYKLIGDSPI 414
Query: 270 QRLLGDMYTMEKS 282
L M +E S
Sbjct: 415 DTFL--MEVLESS 425
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 285 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 344
+ GL VE+L+D+ L +Y R + +P RF +LLL LPSLR++ +E LFF
Sbjct: 347 SKGLQSVNEVEVLRDKVYVALEEYCRTTHPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFY 406
Query: 345 ETIGDIPIQRLLGDMYTMEKS 365
+ IGD PI L M +E S
Sbjct: 407 KLIGDSPIDTFL--MEVLESS 425
>gi|405972025|gb|EKC36822.1| Nuclear receptor subfamily 5 group A member 2 [Crassostrea gigas]
Length = 540
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 11/277 (3%)
Query: 12 IHNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPPPSHHHPSMFLA 71
+ N + S + H HHSP + P + I P V +K+ + +
Sbjct: 267 MRNQYSSSSHVNHHYNHHSPTQMSPLSPVAPPIVPIVPQLILDVKASMADENEIKQKLTS 326
Query: 72 THQPP-PHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKE 130
Q H +LQ + + + +LLF+ V W R F+ L DQ+ LLQ W E
Sbjct: 327 FVQNEFGHEDILQPSVLINMLCKLSDQLLFLMVEWARTSFFFKDLKVEDQMKLLQNCWSE 386
Query: 131 LFLLHLAQ------WSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSP 184
+ +L L WS +++LL + + L D + ++ + I +++ + ++L
Sbjct: 387 ILILDLVHRLVRETWS--GEVTLLNGKKLTLDCL--DKLGLSAAKESIFDLVRKMKELKI 442
Query: 185 DGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLML 244
D +E C+K +IL P+ PGL + Q VE Q++ L +Y Y +FG++LL L
Sbjct: 443 DVNEYLCLKFLILLNPDVPGLENRQAVENSQEKVNSALMEYCVNFYPHLKDKFGQVLLRL 502
Query: 245 PSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
P +R + E L++K G+IP Q LL +M +K
Sbjct: 503 PEVRLISMHAEEFLYYKHLNGEIPDQTLLIEMLHSKK 539
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ PGL + Q VE Q++ L +Y Y +FG++LL LP +R + E L++
Sbjct: 459 DVPGLENRQAVENSQEKVNSALMEYCVNFYPHLKDKFGQVLLRLPEVRLISMHAEEFLYY 518
Query: 344 KETIGDIPIQRLLGDMYTMEK 364
K G+IP Q LL +M +K
Sbjct: 519 KHLNGEIPDQTLLIEMLHSKK 539
>gi|395538223|ref|XP_003771084.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Sarcophilus harrisii]
Length = 605
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 12/216 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E+ +RLLF+++ W + FQ L + + + L++ W ELF L
Sbjct: 383 PSPMPEYLNV----HYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTL 438
Query: 135 HLAQWSIPWDLSLLINCEKAR-------ERLPPDDVRVNNE-IKLIQEILARFRQLSPDG 186
LAQ S ++++++ R ++L + +V E I +QE +L DG
Sbjct: 439 GLAQCSQVMNVAMILAAFVNRLHNSLQQDKLSTERGKVMMEHIFKLQEFCNSMVKLCLDG 498
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+ PGL + +E Q++A DY+ Y R +LLL LP+
Sbjct: 499 YEYAYLKAIVLFSPDHPGLENMGQIEKFQEKAYMEFQDYLTKTYPDDTYRLSKLLLRLPA 558
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
LR + + E LFFK IG++ I ++ ++ ME +
Sbjct: 559 LRLMSATITEELFFKGLIGNVRIDSVIPYIFKMETA 594
>gi|62859085|ref|NP_001016207.1| nuclear receptor subfamily 2 group C member 1 [Xenopus (Silurana)
tropicalis]
gi|123892381|sp|Q28CK1.1|NR2C1_XENTR RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Developmental orphan receptor 2;
Short=DOR2; AltName: Full=Orphan nuclear receptor TR2;
AltName: Full=Testicular receptor 2
gi|89268137|emb|CAJ83740.1| nuclear receptor subfamily 2, group C, member 1; orphan receptor,
TR2-11; nuclear receptor subfamily 2, group H, member 1;
developmental orphan receptor 2 [Xenopus (Silurana)
tropicalis]
gi|114108029|gb|AAI23035.1| nr2c1 protein [Xenopus (Silurana) tropicalis]
Length = 636
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 111/216 (51%), Gaps = 12/216 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E + +RLLF+++ W R + FQ+L + + + L++ W ELF L
Sbjct: 414 PSPMPEYLNVHYICE----SASRLLFLSMHWARSIPSFQSLGQENSISLVKACWNELFSL 469
Query: 135 HLAQW----SIPWDLSLLIN---CEKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDG 186
LAQ ++ L+ +N ++L D V+ V + I +QE +LS DG
Sbjct: 470 GLAQCCQVMNVETILAAFVNHLHNSMQHDKLSADKVKLVMDHIFKLQEFCNSMVKLSVDG 529
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA+ LF+P+ PGL + +E LQ++A DYV Y R RLLL LP+
Sbjct: 530 YEYAYLKAIALFSPDHPGLENVSHIEKLQEKAYMEFQDYVTKTYPEDTYRLSRLLLRLPA 589
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
LR + + E LFF IG++ I ++ + ME S
Sbjct: 590 LRLLNAAITEELFFAGLIGNVQIDSIIPYILRMETS 625
>gi|170065994|ref|XP_001868087.1| nuclear receptor [Culex quinquefasciatus]
gi|167862693|gb|EDS26076.1| nuclear receptor [Culex quinquefasciatus]
Length = 377
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 83 QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIP 142
++ E ET A+LLF+AV+W + + F L DQ +LL+ESW ELF++ AQW +P
Sbjct: 201 EVKTETEMLFETAAKLLFLAVKWAKSVPSFLQLPTADQKILLEESWAELFVITAAQWGLP 260
Query: 143 WDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
I+C D + N K + I+ +F D E C+KA+ILF +
Sbjct: 261 ------IDC---------DFIARNPSAKKLHAIIQQFTLARVDYREAACLKALILFRSDH 305
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
L + +LQDQ +L + G + A ++ + F++
Sbjct: 306 ASLFSGHEILLLQDQTINLLHEKCGGVRLGHLLLLLPGIKA-----AANGKVLQEMLFRK 360
Query: 263 TIGDIPIQRLLGDM 276
TIG++ I+RLL D+
Sbjct: 361 TIGEVAIERLLVDL 374
>gi|348577961|ref|XP_003474752.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Cavia porcellus]
Length = 863
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 15/194 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 675 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 729
Query: 151 CEKARERLPPD--DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R + D E C+K ++LF+ + L +
Sbjct: 730 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSIQLDQREFVCLKFLVLFSVDVKNLENF 789
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LL LP +RA+ E L++K GD+P
Sbjct: 790 QLVEGVQEQVNSALLDYTLCNYPQQAEKFGQLLCGLPEIRAISMQAEEYLYYKHLNGDVP 849
Query: 269 IQRLLGDMYTMEKS 282
LL +M +++
Sbjct: 850 YNNLLIEMLHAKRA 863
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LL LP +RA+ E L
Sbjct: 780 SVDVKNLENFQLVEGVQEQVNSALLDYTLCNYPQQAEKFGQLLCGLPEIRAISMQAEEYL 839
Query: 342 FFKETIGDIPIQRLLGDMYTMEKS 365
++K GD+P LL +M +++
Sbjct: 840 YYKHLNGDVPYNNLLIEMLHAKRA 863
>gi|296212600|ref|XP_002752912.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Callithrix jacchus]
Length = 604
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 18/235 (7%)
Query: 56 KSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTL 115
K P S H + L P P P L + E+ +RLLF+++ W + FQ L
Sbjct: 365 KEGPLLSDSHVAFRLT--MPSPMPEYLNV----HYIGESASRLLFLSMHWALSIPSFQAL 418
Query: 116 SKRDQLLLLQESWKELFLLHLAQ-W---SIPWDLSLLINCEKARERLPPDDVRVN----- 166
+ + +LL++ W ELF L LAQ W ++ L+ +NC L D +
Sbjct: 419 GQENSILLVKAYWNELFTLGLAQCWQVMNVATILATFVNC--LHNSLQQDKMSTERRKLL 476
Query: 167 -NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDY 225
+ I +QE +L DG E +KA++LF+P+ PGL + + +E Q++A DY
Sbjct: 477 MDHIFRLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPGLENMEQIEKFQEKAYVEFQDY 536
Query: 226 VRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
+ Y R RLLL LP+LR + + E LFFK IG+I I ++ + ME
Sbjct: 537 ITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKME 591
>gi|211907079|gb|ACJ12074.1| FTZ-F1 [Bombina orientalis]
Length = 380
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPW------D 144
LF V W R F+ L DQ+ LLQ W EL +L H + S+ D
Sbjct: 192 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIFRQVLHGKEGSVLLVTGQHVD 251
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
S+++ A +N + Q+++++ R L D E C+K ++LF+ +
Sbjct: 252 YSVIVTQAGAT---------LNTLMSHAQDLVSKLRSLQFDLREFVCLKFLVLFSLDVKN 302
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K
Sbjct: 303 LENFQLVEGVQEQVNAALLDYTLCNYPQQTDKFGQLLLRLPEIRAISLQAEEYLYYKHLN 362
Query: 265 GDIPIQRLLGDM 276
GD+P LL +M
Sbjct: 363 GDVPCNNLLIEM 374
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 297 SLDVKNLENFQLVEGVQEQVNAALLDYTLCNYPQQTDKFGQLLLRLPEIRAISLQAEEYL 356
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 357 YYKHLNGDVPCNNLLIEM 374
>gi|426224304|ref|XP_004006312.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Ovis
aries]
Length = 608
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 14/233 (6%)
Query: 56 KSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTL 115
K P S H + L P P P L + E+ +RLLF+++ W + FQ L
Sbjct: 369 KEGPLLSDSHVAFRLT--MPSPMPEYLNV----HYIGESASRLLFLSMHWALSIPSFQAL 422
Query: 116 SKRDQLLLLQESWKELFLLHLAQ-W---SIPWDLSLLINCEKA---RERLPPDDVRVNNE 168
+ + + L++ W ELF L LAQ W ++ L+ +NC + ++++P + ++ E
Sbjct: 423 GQENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKIPAERRKLLME 482
Query: 169 -IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVR 227
I +QE +L DG E +KA++LF+P+ PGL + + +E Q++A DY+
Sbjct: 483 HIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPGLENMEQIEKFQEKAYVEFQDYIT 542
Query: 228 GRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
Y R RLLL LP+LR + + E LFFK IG++ I ++ + ME
Sbjct: 543 KTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNVRIDSVIPHILKME 595
>gi|162416915|emb|CAJ53825.2| putative hepatocyte nuclear factor 4 [Mytilus galloprovincialis]
Length = 312
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 99/194 (51%)
Query: 83 QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIP 142
+++ +A+ E+ + L + V W + + F L DQ+ LL+ E +L +A+ S+
Sbjct: 119 KVIATADDVCESIKQQLLVLVEWAKYIPCFCELPLDDQVALLRAHAGEHLVLGVARRSMA 178
Query: 143 WDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
LL+ + R D +++ E++A FR + D +E C+KA++ F PE
Sbjct: 179 VKDVLLLGNDGIIPRNATDMEMGTIAARVLDELVAAFRDIQIDDTEFACIKAIVFFDPEA 238
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D Q ++ + Q Q L DY+ R RFG +LL+LP+L+++ IE++ F +
Sbjct: 239 KGLTDPQKIKSFRYQVQVNLEDYINDRQYDSRGRFGEILLLLPALQSITWQMIEQIQFAK 298
Query: 263 TIGDIPIQRLLGDM 276
G I LL +M
Sbjct: 299 LFGMAKIDNLLQEM 312
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL D Q ++ + Q Q L DY+ R RFG +LL+LP+L+++ IE++ F
Sbjct: 237 EAKGLTDPQKIKSFRYQVQVNLEDYINDRQYDSRGRFGEILLLLPALQSITWQMIEQIQF 296
Query: 344 KETIGDIPIQRLLGDM 359
+ G I LL +M
Sbjct: 297 AKLFGMAKIDNLLQEM 312
>gi|242046702|ref|XP_002399654.1| zinc finger, C4 type, putative [Ixodes scapularis]
gi|215501722|gb|EEC11216.1| zinc finger, C4 type, putative [Ixodes scapularis]
Length = 317
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 98/189 (51%), Gaps = 1/189 (0%)
Query: 88 AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSL 147
++ C+ +LL + V W + + F LS DQ+ LL+ E LL LA+ S+ L
Sbjct: 24 SDVCESMKQQLLIL-VDWAKSVPSFTELSIEDQVALLRAHAGEHLLLGLARRSMHIKNVL 82
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
L+ + R+ + +++ E++ R++ D +E C++A++ F P T GL +
Sbjct: 83 LLGNDFIIPRVSSEVEISRVGARIMDELVTTLREVHIDDTEFACLRAIVFFDPHTKGLSE 142
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDI 267
Q ++ L+ Q Q L DY+ R RFG ++L+LP+L+++ IE++ F + G
Sbjct: 143 PQKIKALRYQVQTNLEDYINDRQYDSRGRFGEIMLLLPTLQSITWQMIEQIQFAKLFGMT 202
Query: 268 PIQRLLGDM 276
+ LL +M
Sbjct: 203 KVDNLLQEM 211
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 285 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 344
T GL + Q ++ L+ Q Q L DY+ R RFG ++L+LP+L+++ IE++ F
Sbjct: 137 TKGLSEPQKIKALRYQVQTNLEDYINDRQYDSRGRFGEIMLLLPTLQSITWQMIEQIQFA 196
Query: 345 ETIGDIPIQRLLGDM 359
+ G + LL +M
Sbjct: 197 KLFGMTKVDNLLQEM 211
>gi|351702679|gb|EHB05598.1| Retinoic acid receptor RXR-gamma-A [Heterocephalus glaber]
Length = 616
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Query: 127 SWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPD 185
W EL + + SI +L+ R V +++ E++++ R + D
Sbjct: 458 GWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMD 517
Query: 186 GSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLP 245
+E GC++A++LF P++ GL + VE L+++ L Y + +Y QP RF +LLL LP
Sbjct: 518 KTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLP 577
Query: 246 SLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
+LR++ +E LFF + IGD PI L +M
Sbjct: 578 ALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 608
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 533 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 592
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 593 FKLIGDTPIDTFLMEM 608
>gi|260829327|ref|XP_002609613.1| hypothetical protein BRAFLDRAFT_87834 [Branchiostoma floridae]
gi|229294975|gb|EEN65623.1| hypothetical protein BRAFLDRAFT_87834 [Branchiostoma floridae]
Length = 414
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 14/196 (7%)
Query: 94 TTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL----I 149
+++L + ++R L F L DQ+LLL SW E+ + +AQ +P D +
Sbjct: 217 AASQVLIQTIDFMRKLPAFTYLPPNDQMLLLMRSWHEIVAIGVAQEKVPIDTVSVPAPPC 276
Query: 150 NCEKARER----LPPDDVR-----VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP 200
C E PP + +++++ IQ+ + +++ L D E +KA +LFTP
Sbjct: 277 ECCTGAEMHWGGTPPPTLTMPGCILSSDLDDIQQFVMKYQSLDLDCKEAAYLKAAVLFTP 336
Query: 201 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
PGL +E LQ +AQ L +Y + RF R+LLM+P LR ++Q I LFF
Sbjct: 337 -VPGLAHPHYIEALQKEAQQALNEYTMMTRPLETLRFARILLMVPLLRGIKQEPITELFF 395
Query: 261 KETIGDIPIQRLLGDM 276
+ I ++ ++ +L M
Sbjct: 396 RPLIANVRMEDVLRQM 411
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 285 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 344
PGL +E LQ +AQ L +Y + RF R+LLM+P LR ++Q I LFF+
Sbjct: 337 VPGLAHPHYIEALQKEAQQALNEYTMMTRPLETLRFARILLMVPLLRGIKQEPITELFFR 396
Query: 345 ETIGDIPIQRLLGDM 359
I ++ ++ +L M
Sbjct: 397 PLIANVRMEDVLRQM 411
>gi|74147214|dbj|BAE27509.1| unnamed protein product [Mus musculus]
Length = 590
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 12/214 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E+ +RLLF+++ W + FQ L + + + L++ W ELF L
Sbjct: 368 PSPMPEYLNV----HYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTL 423
Query: 135 HLAQ-W---SIPWDLSLLINCEKA---RERLPPDDVR-VNNEIKLIQEILARFRQLSPDG 186
LAQ W ++ L+ +NC + ++++ P+ + + I +QE +L DG
Sbjct: 424 GLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQEFCNSMVKLCIDG 483
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+ PGL + + +E Q++A DY+ Y R RLLL LP+
Sbjct: 484 HEYAYLKAIVLFSPDHPGLENMELIERFQEKAYVEFQDYITRTYPNDTYRLSRLLLRLPA 543
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
LR + + E LFFK IG++ I ++ + ME
Sbjct: 544 LRLMNATITEELFFKGLIGNVRIDSVIPHILKME 577
>gi|260809813|ref|XP_002599699.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
gi|229284980|gb|EEN55711.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
Length = 632
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 14/226 (6%)
Query: 65 HPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLL 124
H + L T P P P L + E+ +RLLF+ + W R + FQ L + L+
Sbjct: 406 HTAFKLTT--PSPMPEFLNV----HYICESASRLLFLTMHWARSIPAFQALGQECHTGLV 459
Query: 125 QESWKELFLLHLAQ----WSIPWDLSLLIN---CEKARERLPPDDVRVNNE-IKLIQEIL 176
+ W ELF L L+Q S+P L+ ++N ++L D V+V E I +QE +
Sbjct: 460 RVCWSELFTLGLSQCSAVMSLPTILTAIVNHLQSSVQADKLSADRVKVVMEHIWKLQEFI 519
Query: 177 ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
+ L+ D +E MKA++LF+ + PGL++ + +E Q++A L +Y + R
Sbjct: 520 NKMAALTVDPTEYAYMKAIVLFSTDHPGLLNPRQIEKFQEKAHEELKEYEAQAHPDDTER 579
Query: 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
F +LLL LP+LR + S +E LFF IG++ I ++ + ME +
Sbjct: 580 FAKLLLRLPALRLLSPSIMEELFFAGLIGNVQIDSIIPYILRMETA 625
>gi|327272700|ref|XP_003221122.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Anolis carolinensis]
Length = 641
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 111/216 (51%), Gaps = 12/216 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E + +RLLF+++ W R ++ FQ L + + + L++ W ELF+L
Sbjct: 419 PSPMPEYLNVHYICE----SASRLLFLSMHWARSISSFQALGQDNSISLVKACWNELFIL 474
Query: 135 HLAQWS----IPWDLSLLIN---CEKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDG 186
LAQ S + L+ +N +++L D + V I +QE +L DG
Sbjct: 475 GLAQCSQVMNVATILAAFVNHLHNSLQQDKLSADRGKLVMEHIFKLQEFCNSMVKLCLDG 534
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+ PGL + Q +E Q++A DY+ Y R RLLL LP+
Sbjct: 535 YEYAYLKAIVLFSPDHPGLENVQQIEKFQEKAYMEFQDYITKVYPDDTYRLSRLLLRLPA 594
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
LR + + E LFF IG++ I ++ + ME +
Sbjct: 595 LRLMSAAITEELFFAGLIGNVQIDSIIPYILRMETA 630
>gi|76364252|gb|ABA41640.1| retinoic X receptor-like protein [Strongylocentrotus purpuratus]
Length = 307
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ+ LL+ W EL + + SI +L+
Sbjct: 128 CQ-AADKQLFTLVEWAKRIPHFTELPLDDQVTLLRAGWNELLIAAFSHRSIQVKDGILLA 186
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++A++LF P+ L Q
Sbjct: 187 TGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNLTSVQ 246
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIE 256
VE L+++ L +Y R +Y+ +P RF +LLL LP+LR++ +E
Sbjct: 247 KVEELREKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLE 293
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIE 339
+ L Q VE L+++ L +Y R +Y+ +P RF +LLL LP+LR++ +E
Sbjct: 238 DAKNLTSVQKVEELREKVYASLEEYCRNQYTDEPGRFAKLLLRLPALRSIGLKCLE 293
>gi|390357871|ref|XP_003729121.1| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 1
[Strongylocentrotus purpuratus]
Length = 493
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E+ + L + V W + + F L DQ+ LL+ E +L A+ S+P+ L++ +
Sbjct: 185 ESMKQHLLVLVEWAKYIPSFCDLPLDDQVALLRAHAGEHLVLGAARRSLPYKDILVLGPD 244
Query: 153 KARERLPPDDVRVNN-EIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R D + ++ +++ E++A R +S D E C+KA++ F P+ GL + +
Sbjct: 245 VILPRHSQDQMDIHRVASRVLDELIAPMRDVSLDDHEFACLKAIVFFDPDAKGLSEPNRI 304
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
+ML+ Q Q L DY+ R RFG +LLMLP L+++ IE++ F +G +
Sbjct: 305 KMLRYQVQIHLEDYINDRQYDSRGRFGEILLMLPPLQSITWQMIEQIQFARLMGVAKVDN 364
Query: 272 LLGDM 276
LL +M
Sbjct: 365 LLQEM 369
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + ++ML+ Q Q L DY+ R RFG +LLMLP L+++ IE++ F
Sbjct: 294 DAKGLSEPNRIKMLRYQVQIHLEDYINDRQYDSRGRFGEILLMLPPLQSITWQMIEQIQF 353
Query: 344 KETIGDIPIQRLLGDM 359
+G + LL +M
Sbjct: 354 ARLMGVAKVDNLLQEM 369
>gi|322791504|gb|EFZ15895.1| hypothetical protein SINV_00119 [Solenopsis invicta]
Length = 337
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 102/208 (49%), Gaps = 25/208 (12%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
E E ARLLF+ V W R L +L DQL LL+ SW+ELFLL AQ D + L
Sbjct: 133 EAICEQAARLLFLNVHWARDLVSGTSLVMEDQLTLLESSWRELFLLAAAQMIPTLDPTPL 192
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG---- 204
+ + P + + E+ +E LA F ++ D E C++A++LF
Sbjct: 193 LP-----PSMLPQSISLMIEVNRFRETLAGFHAMNLDQHEFACIRAIVLFKAGLDSEPVS 247
Query: 205 ---------------LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRA 249
L DA V L D AQ LG + G S R +LLL+LP+LR+
Sbjct: 248 SSRSTSSNSPSPGSRLRDAVGVARLMDSAQLALGQRLSGA-SYGTLRLNKLLLLLPTLRS 306
Query: 250 VRQSTIERLFFKETIGDIPIQRLLGDMY 277
V IE LFF+ TIG IPI+R++ D+Y
Sbjct: 307 VSAHAIEELFFRTTIGVIPIERIICDVY 334
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 288 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 347
L DA V L D AQ LG + G S R +LLL+LP+LR+V IE LFF+ TI
Sbjct: 263 LRDAVGVARLMDSAQLALGQRLSGA-SYGTLRLNKLLLLLPTLRSVSAHAIEELFFRTTI 321
Query: 348 GDIPIQRLLGDMY 360
G IPI+R++ D+Y
Sbjct: 322 GVIPIERIICDVY 334
>gi|71894981|ref|NP_001026026.1| hepatocyte nuclear factor 4-alpha [Gallus gallus]
gi|57116106|gb|AAW33562.1| hepatic nuclear factor 4alpha [Gallus gallus]
Length = 454
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 105/203 (51%), Gaps = 1/203 (0%)
Query: 83 QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIP 142
+I A+ C+ +LL + V W + + F L DQ+ LL+ E LL +A+ S+
Sbjct: 171 KIANIADVCESMKQQLLVL-VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGVAKRSMV 229
Query: 143 WDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
+ LL+ + R P+ V V I+++ E++ F++L D +E C+KA+I F P+
Sbjct: 230 FKDVLLLGNDHIVPRNCPELVEVRVAIRILDELVLPFQELQIDDNEYACLKAIIFFDPDA 289
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D ++ ++ Q Q L DY+ R RFG LLL+LP L+++ IE++ F +
Sbjct: 290 KGLSDPSKIKRMRYQVQVSLEDYINDRQYDSRGRFGELLLLLPVLQSITWQMIEQIQFVK 349
Query: 263 TIGDIPIQRLLGDMYTMEKSYET 285
G I LL +M S ET
Sbjct: 350 LFGMAKIDNLLQEMLLGGSSSET 372
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D ++ ++ Q Q L DY+ R RFG LLL+LP L+++ IE++ F
Sbjct: 288 DAKGLSDPSKIKRMRYQVQVSLEDYINDRQYDSRGRFGELLLLLPVLQSITWQMIEQIQF 347
Query: 344 KETIGDIPIQRLLGDM 359
+ G I LL +M
Sbjct: 348 VKLFGMAKIDNLLQEM 363
>gi|218156198|dbj|BAH03331.1| retinoid X receptor [Lethenteron camtschaticum]
Length = 306
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 22/207 (10%)
Query: 45 PPTVLYPPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVR 104
P T Y G SP S + P + I +A+K LF V
Sbjct: 116 PKTETYAELGAASPAGASPNDP--------------VTNICQAADK-------QLFTLVE 154
Query: 105 WVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVR 164
W + + F LS DQ++LL+ W EL + + SI +L+ R
Sbjct: 155 WAKRVPHFSELSLDDQVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRSSAHSAG 214
Query: 165 VNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILG 223
V + +++ E++++ R + D +E GC++A++LF P+ GL VE L+++ L
Sbjct: 215 VGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDAKGLSSPGEVEALREKVYASLE 274
Query: 224 DYVRGRYSRQPTRFGRLLLMLPSLRAV 250
Y + +Y QP RF +LLL LP+LR++
Sbjct: 275 AYCKQKYPDQPGRFAKLLLRLPALRSI 301
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV 333
+ GL VE L+++ L Y + +Y QP RF +LLL LP+LR++
Sbjct: 252 DAKGLSSPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSI 301
>gi|124431283|gb|ABN11290.1| ultraspiracle protein [Myzus persicae]
Length = 267
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 4/193 (2%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T +L+ + V W + + F+ L DQ+LLL+ W EL + + SI +++
Sbjct: 70 CQATDKQLIQL-VEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFSHRSISVKDGIVLA 128
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+R V +++ E++A+ R + D +E GC++ +ILF P + GL
Sbjct: 129 TGLTVDRDSAHQAGVEAIFDRVLTELVAKMRDMGMDRTELGCLRTIILFNPGSKGLQSVN 188
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
V++L+D+ L +Y R + +P RF +LLL LPSLR++ +E LFF + IGD PI
Sbjct: 189 EVQVLRDKVYVALEEYCRTTHPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFYKLIGDSPI 248
Query: 270 QRLLGDMYTMEKS 282
L M +E S
Sbjct: 249 DTFL--MEVLESS 259
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 285 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 344
+ GL V++L+D+ L +Y R + +P RF +LLL LPSLR++ +E LFF
Sbjct: 181 SKGLQSVNEVQVLRDKVYVALEEYCRTTHPEEPGRFAKLLLRLPSLRSIGLKCLEHLFFY 240
Query: 345 ETIGDIPIQRLLGDMYTMEKS 365
+ IGD PI L M +E S
Sbjct: 241 KLIGDSPIDTFL--MEVLESS 259
>gi|390357873|ref|XP_780389.2| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 2
[Strongylocentrotus purpuratus]
Length = 468
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 1/185 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E+ + L + V W + + F L DQ+ LL+ E +L A+ S+P+ L++ +
Sbjct: 160 ESMKQHLLVLVEWAKYIPSFCDLPLDDQVALLRAHAGEHLVLGAARRSLPYKDILVLGPD 219
Query: 153 KARERLPPDDVRVNN-EIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R D + ++ +++ E++A R +S D E C+KA++ F P+ GL + +
Sbjct: 220 VILPRHSQDQMDIHRVASRVLDELIAPMRDVSLDDHEFACLKAIVFFDPDAKGLSEPNRI 279
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
+ML+ Q Q L DY+ R RFG +LLMLP L+++ IE++ F +G +
Sbjct: 280 KMLRYQVQIHLEDYINDRQYDSRGRFGEILLMLPPLQSITWQMIEQIQFARLMGVAKVDN 339
Query: 272 LLGDM 276
LL +M
Sbjct: 340 LLQEM 344
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + ++ML+ Q Q L DY+ R RFG +LLMLP L+++ IE++ F
Sbjct: 269 DAKGLSEPNRIKMLRYQVQIHLEDYINDRQYDSRGRFGEILLMLPPLQSITWQMIEQIQF 328
Query: 344 KETIGDIPIQRLLGDM 359
+G + LL +M
Sbjct: 329 ARLMGVAKVDNLLQEM 344
>gi|21955144|ref|NP_665723.1| nuclear receptor subfamily 2 group C member 1 [Rattus norvegicus]
gi|81902145|sp|Q8VIJ4.1|NR2C1_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2
gi|16905400|gb|AAL31316.1|L26398_1 orphan receptor [Rattus norvegicus]
gi|38197570|gb|AAH61822.1| Nr2c1 protein [Rattus norvegicus]
gi|149067156|gb|EDM16889.1| pregnancy specific beta-1-glycoprotein 4, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 112/214 (52%), Gaps = 12/214 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E+ +RLLF+++ W + FQ L + + + L++ W ELF L
Sbjct: 368 PSPMPEYLNV----HYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTL 423
Query: 135 HLAQ-W---SIPWDLSLLINC---EKARERLPPDDVRVNNE-IKLIQEILARFRQLSPDG 186
LAQ W ++ L+ +NC ++++ P+ ++ E I +QE +L DG
Sbjct: 424 GLAQCWQVMNVATILATFVNCLHNSLQQDKMSPERRKLLMEHIFKLQEFCNSMVKLCIDG 483
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+ PGL + + +E Q++A DY+ Y R RLLL LP+
Sbjct: 484 HEYAYLKAIVLFSPDHPGLENMELIEKFQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPA 543
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
LR + + E LFFK IG++ I ++ + ME
Sbjct: 544 LRLMNATITEELFFKGLIGNVRIDSVIPHILKME 577
>gi|311256682|ref|XP_003126756.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like [Sus
scrofa]
Length = 605
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 118/233 (50%), Gaps = 14/233 (6%)
Query: 56 KSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTL 115
K P S H + L P P P L + E+ +RLLF+++ W + FQ L
Sbjct: 366 KEGPLLSDSHVAFRLT--MPSPMPEYLNV----HYIGESASRLLFLSMHWALSIPSFQAL 419
Query: 116 SKRDQLLLLQESWKELFLLHLAQ-W---SIPWDLSLLINCEKA---RERLPPDDVRVNNE 168
+ + + L++ W ELF L LAQ W ++ L+ +NC + ++++ + +V E
Sbjct: 420 GQENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKVLME 479
Query: 169 -IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVR 227
I +QE +L DG E +KA++LF+P+ PGL + + +E Q++A DY+
Sbjct: 480 HIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPGLENMEQIEKFQEKAYVEFQDYIT 539
Query: 228 GRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
Y R RLLL LP+LR + + E LFFK IG++ I ++ + ME
Sbjct: 540 KTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNVRIDSVIPHILKME 592
>gi|312382715|gb|EFR28076.1| hypothetical protein AND_04416 [Anopheles darlingi]
Length = 542
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 109/250 (43%), Gaps = 57/250 (22%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
L++ E +E+ A+LLFM V +++ LAPF L DQL+L +ESW+ELF+L +AQ+ P +
Sbjct: 290 LVAVEAIRESAAQLLFMNVNFLKSLAPFVQLPMVDQLVLFEESWRELFILAVAQYLAPVN 349
Query: 145 LS-LLINCE--------KARERLPPDDVRVN------NEIKLIQEILARFRQLSPDGSEC 189
LLI E A P E+++ QEIL++ L D +E
Sbjct: 350 FGQLLIAYEYLNGGHHRGATAATPSTQGTTALTDFLLKEVEIFQEILSQLAALRVDANEY 409
Query: 190 GCMKAVILFTPETPG------------------------------------------LVD 207
++A+ L+ E G + +
Sbjct: 410 VYLRAIALYKSEFDGETSISSVSSDGSDVTNSTGGTGSSTGSSSTTTTTSTGTGTRSITE 469
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDI 267
V L++ A+ L Y++ R+ LL +LP +R V TIE LFF+ IG
Sbjct: 470 LGTVRALEEAAREALATYIQQCRPGPTNRYRALLQLLPLMRNVSSYTIEELFFRRNIGPA 529
Query: 268 PIQRLLGDMY 277
P+ +LL D Y
Sbjct: 530 PLLKLLLDFY 539
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 353
V L++ A+ L Y++ R+ LL +LP +R V TIE LFF+ IG P+
Sbjct: 473 VRALEEAAREALATYIQQCRPGPTNRYRALLQLLPLMRNVSSYTIEELFFRRNIGPAPLL 532
Query: 354 RLLGDMY 360
+LL D Y
Sbjct: 533 KLLLDFY 539
>gi|118343826|ref|NP_001071735.1| nuclear receptor [Ciona intestinalis]
gi|70569867|dbj|BAE06492.1| nuclear receptor [Ciona intestinalis]
Length = 512
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 95/192 (49%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+ S ++ + L + V W + + F L DQ+ LL+ E L+ A+ S+P+
Sbjct: 232 IASVNDVCDSIRQQLLVLVEWAKYIPAFSELPLDDQVALLRAHAGENLLMGAAKRSLPYK 291
Query: 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
LL+ + R P+ ++++ E++ LS D +E C+KA++ F P+ G
Sbjct: 292 DVLLLGNDFIIPRHCPEVEITRVAVRVLDELVRPLADLSLDANEFACLKAIVFFDPDARG 351
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L + ++ ++ Q C L DY+ R RFG +LL+LP+L+++ IE++ F
Sbjct: 352 LNNPTKIKQMRSQVMCNLEDYINDRQYDSRGRFGEILLLLPTLQSITWQMIEQIQFVRIF 411
Query: 265 GDIPIQRLLGDM 276
G + LL +M
Sbjct: 412 GVARVDNLLQEM 423
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL + ++ ++ Q C L DY+ R RFG +LL+LP+L+++ IE++ F
Sbjct: 351 GLNNPTKIKQMRSQVMCNLEDYINDRQYDSRGRFGEILLLLPTLQSITWQMIEQIQFVRI 410
Query: 347 IGDIPIQRLLGDM 359
G + LL +M
Sbjct: 411 FGVARVDNLLQEM 423
>gi|296485043|tpg|DAA27158.1| TPA: COUP transcription factor 1 [Bos taurus]
Length = 352
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 214 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 273
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 274 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 333
Query: 203 PGLVDAQPVEMLQDQAQC 220
GL DA +E LQ+++QC
Sbjct: 334 CGLSDAAHIESLQEKSQC 351
>gi|1890579|emb|CAA72244.1| orphan receptor [Mus musculus]
Length = 590
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 12/214 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E+ +RLLF+++ W + FQ L + + + L++ W ELF L
Sbjct: 368 PSPMPEYLNV----HYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTL 423
Query: 135 HLAQ-W---SIPWDLSLLINCEKA---RERLPPDDVR-VNNEIKLIQEILARFRQLSPDG 186
LAQ W ++ L+ +NC + ++++ P+ + + I +QE +L DG
Sbjct: 424 GLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQEFCNSMVKLCIDG 483
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+ PGL + + +E Q++A DY+ Y R RLLL LP+
Sbjct: 484 HEYAYLKAIVLFSPDHPGLENMELIERFQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPA 543
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
LR + + E LFFK IG++ I ++ + ME
Sbjct: 544 LRLMNATITEELFFKGLIGNVRIDSVIPHILKME 577
>gi|171846245|ref|NP_035759.3| nuclear receptor subfamily 2 group C member 1 [Mus musculus]
gi|341942228|sp|Q505F1.3|NR2C1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2; Short=mTR2
gi|63101502|gb|AAH94580.1| Nr2c1 protein [Mus musculus]
gi|74143559|dbj|BAE28842.1| unnamed protein product [Mus musculus]
gi|111598870|gb|AAH90662.1| Nr2c1 protein [Mus musculus]
Length = 590
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 12/214 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E+ +RLLF+++ W + FQ L + + + L++ W ELF L
Sbjct: 368 PSPMPEYLNV----HYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTL 423
Query: 135 HLAQ-W---SIPWDLSLLINCEKA---RERLPPDDVR-VNNEIKLIQEILARFRQLSPDG 186
LAQ W ++ L+ +NC + ++++ P+ + + I +QE +L DG
Sbjct: 424 GLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQEFCNSMVKLCIDG 483
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+ PGL + + +E Q++A DY+ Y R RLLL LP+
Sbjct: 484 HEYAYLKAIVLFSPDHPGLENMELIERFQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPA 543
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
LR + + E LFFK IG++ I ++ + ME
Sbjct: 544 LRLMNATITEELFFKGLIGNVRIDSVIPHILKME 577
>gi|57231806|gb|AAW47616.1| tailless [Drosophila americana]
Length = 389
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 127/305 (41%), Gaps = 95/305 (31%)
Query: 1 VQHERGPRKPKI--HNAHHQDSKLEPHNPHHSPDLLPPNGISSV-KIPPTVLYPPS---- 53
VQHERGPR + H A ++D+ + G + + +IPP +L +
Sbjct: 99 VQHERGPRNSTLRRHMAMYKDAMM---------------GAAEMPQIPPEILMNTAALTG 143
Query: 54 --GLKSPPPP---SHHHPSMFLATHQPPPHPGLLQI------------------------ 84
GL P P SHHH ++ A QPPP +L +
Sbjct: 144 FPGLPMPMPGVQRSHHHAALS-AAFQPPPSAAVLDLSVPRVPHHPVHQGHHGFFSPTAAY 202
Query: 85 --------------LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKE 130
LM+AE +ET A LF V W++ + F L DQLLLL+ESWKE
Sbjct: 203 MNALATRALPPTPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKE 262
Query: 131 LFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECG 190
F+L +AQ+ +P + + L+ ++ V E+ Q++L + L+ D +E
Sbjct: 263 FFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQDVLNQLCHLNIDSTEYE 322
Query: 191 CMKAVILF-----------------------------TPETPGLVDAQPVEMLQDQAQCI 221
C++A+ LF + E+ GL+++ V +Q+ A+
Sbjct: 323 CLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVAAMQNDARNA 382
Query: 222 LGDYV 226
L +Y+
Sbjct: 383 LHNYI 387
>gi|16905398|gb|AAL31315.1|L26957_1 orphan receptor [Mus musculus]
gi|1049076|gb|AAC29502.1| TR2 [Mus musculus]
Length = 590
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 12/214 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E+ +RLLF+++ W + FQ L + + + L++ W ELF L
Sbjct: 368 PSPMPEYLNV----HYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTL 423
Query: 135 HLAQ-W---SIPWDLSLLINCEKA---RERLPPDDVR-VNNEIKLIQEILARFRQLSPDG 186
LAQ W ++ L+ +NC + ++++ P+ + + I +QE +L DG
Sbjct: 424 GLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQEFCNSMVKLCIDG 483
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+ PGL + + +E Q++A DY+ Y R RLLL LP+
Sbjct: 484 HEYAYLKAIVLFSPDHPGLENMELIERFQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPA 543
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
LR + + E LFFK IG++ I ++ + ME
Sbjct: 544 LRLMNATITEELFFKGLIGNVRIDSVIPHILKME 577
>gi|195999182|ref|XP_002109459.1| hypothetical protein TRIADDRAFT_49897 [Trichoplax adhaerens]
gi|190587583|gb|EDV27625.1| hypothetical protein TRIADDRAFT_49897 [Trichoplax adhaerens]
Length = 327
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 8/197 (4%)
Query: 81 LLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS 140
+L I +A+K LF V W + + F L DQ++LL+ W EL + + S
Sbjct: 132 VLNICQAADK-------QLFNLVEWAKKIPHFCDLCVDDQVILLRSGWNELLIAAFSFRS 184
Query: 141 IPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFT 199
I + LL++ R + + +++ E++ + R L D +E GC++A+ILF
Sbjct: 185 IAVEDGLLLSTGHYIHRTSAHNAGIGAIFDRILTELVNQMRYLKMDKTELGCLRAIILFN 244
Query: 200 PETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
P+ GL A VE ++ L YV+ R+ Q RF +LLL LP+LRA+ T+E LF
Sbjct: 245 PDVRGLTSADRVEKYRELVYGALEAYVKKRFPDQLCRFAKLLLRLPALRAISLKTLEHLF 304
Query: 260 FKETIGDIPIQRLLGDM 276
F + IGD PI L +M
Sbjct: 305 FYKLIGDPPIDTFLMEM 321
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL A VE ++ L YV+ R+ Q RF +LLL LP+LRA+ T+E LFF
Sbjct: 246 DVRGLTSADRVEKYRELVYGALEAYVKKRFPDQLCRFAKLLLRLPALRAISLKTLEHLFF 305
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 306 YKLIGDPPIDTFLMEM 321
>gi|391334318|ref|XP_003741552.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Metaseiulus
occidentalis]
Length = 574
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 86/172 (50%), Gaps = 1/172 (0%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
V W R + F TL DQ+ L+++ W EL + + SI +++ +R
Sbjct: 394 VAWARMIPHFLTLPVEDQVALIKQGWNELLIAGFSHRSINVKDGIVLATGLVVQRDSAHQ 453
Query: 163 VRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
V +++ E++ + R + D +E GC++A++L+ PE GL VE ++
Sbjct: 454 AGVGAIFDRVLAELVTKMRDIKMDKTELGCLRAIVLYNPEARGLRSVAEVEQFREGVYIA 513
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLL 273
L +Y R Y Q +RF +LLL LP+LR++ +E LFF + D I + L
Sbjct: 514 LEEYTRMSYPDQNSRFPKLLLRLPALRSIGLKCVENLFFLKLSADATIDQFL 565
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL VE ++ L +Y R Y Q +RF +LLL LP+LR++ +E LFF
Sbjct: 493 EARGLRSVAEVEQFREGVYIALEEYTRMSYPDQNSRFPKLLLRLPALRSIGLKCVENLFF 552
Query: 344 KETIGDIPIQRLL 356
+ D I + L
Sbjct: 553 LKLSADATIDQFL 565
>gi|21310109|gb|AAM46150.1|AF378828_1 nuclear orphan receptor TR2/4 [Branchiostoma floridae]
Length = 511
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 14/226 (6%)
Query: 65 HPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLL 124
H + L T P P P L + E + +RLLF+ + W R + FQ L + L+
Sbjct: 281 HTAFKLTT--PSPMPEFLNVHYICE----SASRLLFLTMHWARSIPAFQALGQECHTGLV 334
Query: 125 QESWKELFLLHLAQWS----IPWDLSLLINCEKAR---ERLPPDDVRVNNE-IKLIQEIL 176
+ W ELF L L+Q S +P L+ ++N ++ ++L D V+V E I +QE +
Sbjct: 335 RVCWSELFTLGLSQCSAVMSLPTILTAIVNHLQSSVQADKLSADRVKVVMEHIWKLQEFI 394
Query: 177 ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
+ L+ D +E MKA++LF+ + PGL++ + +E Q++A L +Y + R
Sbjct: 395 NKMAALTVDPTEYAYMKAIVLFSTDHPGLLNPRQIEKFQEKAHEELKEYEAQAHPDDTER 454
Query: 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
F +LLL LP+LR + S +E LFF IG++ I ++ + ME +
Sbjct: 455 FAKLLLRLPALRLLSPSIMEELFFAGLIGNVQIDSIIPYILRMETA 500
>gi|432111870|gb|ELK34912.1| Nuclear receptor subfamily 2 group C member 1 [Myotis davidii]
Length = 549
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 14/232 (6%)
Query: 57 SPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLS 116
S PP+ P+ L P P P L + E+ +RLLF+++ W + FQ L
Sbjct: 311 SCTPPTGDVPATKLT--MPSPMPEYLNV----HYIGESASRLLFLSMHWALSIPSFQALG 364
Query: 117 KRDQLLLLQESWKELFLLHLAQ-W---SIPWDLSLLINCEKA---RERLPPDDVRVNNE- 168
+ + + L++ W ELF L LAQ W ++ L+ +NC + ++++ + ++ E
Sbjct: 365 QENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKLLMEH 424
Query: 169 IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRG 228
I +QE +L DG E +KA++LF+P+ PGL + + +E Q++A DY+
Sbjct: 425 IFKLQEFCNSMVKLCVDGYEYAYLKAIVLFSPDHPGLENIEQIEKFQEKAYVEFQDYITR 484
Query: 229 RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
Y R RLLL LP+LR + + E LFFK IG + I ++ + ME
Sbjct: 485 TYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGSVRIDSVIPHILKME 536
>gi|259013275|ref|NP_001158442.1| FTZ-F1-related protein [Saccoglossus kowalevskii]
gi|197320551|gb|ACH68437.1| FTZ-F1-related protein [Saccoglossus kowalevskii]
Length = 475
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 5/181 (2%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W R F+ L DQ+ LLQ +W EL ++ + ++ +I E L
Sbjct: 291 LFAFVDWARNSMFFKDLKVEDQMKLLQNAWSELLVIDQCYRQVESNVEEMILV--TGEVL 348
Query: 159 PPDDVRV---NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQ 215
+R+ + + + EI+ R ++L D E C+K ++L P+ PGL D + Q
Sbjct: 349 DVAKLRMYGLGDIVDRMTEIIKRMKELKMDRKEFMCLKFLLLLNPDVPGLQDNHAIRQFQ 408
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
+Q L DY Y +FG+LLL LP +R + E L++K G++P LL +
Sbjct: 409 EQIHAALLDYTMSNYPEVTEKFGQLLLRLPEIRQISLQGEEYLYYKHLSGEVPYNSLLME 468
Query: 276 M 276
M
Sbjct: 469 M 469
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ PGL D + Q+Q L DY Y +FG+LLL LP +R + E L++
Sbjct: 394 DVPGLQDNHAIRQFQEQIHAALLDYTMSNYPEVTEKFGQLLLRLPEIRQISLQGEEYLYY 453
Query: 344 KETIGDIPIQRLLGDM 359
K G++P LL +M
Sbjct: 454 KHLSGEVPYNSLLMEM 469
>gi|354478543|ref|XP_003501474.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Cricetulus griseus]
gi|344252291|gb|EGW08395.1| Nuclear receptor subfamily 2 group C member 1 [Cricetulus griseus]
Length = 590
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 112/214 (52%), Gaps = 12/214 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E+ +RLLF+++ W + FQ L + + + L++ W ELF L
Sbjct: 368 PSPMPEYLNV----HYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTL 423
Query: 135 HLAQ-W---SIPWDLSLLINCEKA---RERLPPDDVR-VNNEIKLIQEILARFRQLSPDG 186
LAQ W ++ L+ +NC + ++++ P+ + + I +QE +L DG
Sbjct: 424 GLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQEFCNSMVKLCIDG 483
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+ PGL + + +E Q++A DY+ Y R RLLL LP+
Sbjct: 484 YEYAYLKAIVLFSPDHPGLENMELIEKFQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPA 543
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280
LR + + E LFFK IG++ I ++ + ME
Sbjct: 544 LRLMNATITEELFFKGLIGNVRIDSVIPHILKME 577
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,199,314,312
Number of Sequences: 23463169
Number of extensions: 266987704
Number of successful extensions: 905496
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2773
Number of HSP's successfully gapped in prelim test: 2649
Number of HSP's that attempted gapping in prelim test: 882563
Number of HSP's gapped (non-prelim): 19366
length of query: 367
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 223
effective length of database: 8,980,499,031
effective search space: 2002651283913
effective search space used: 2002651283913
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)