BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6602
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 36 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 95
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 96 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 155
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 156 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 215
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 216 LVGKTPIETLIRDMLLSGSSFNWP 239
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 157 GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRL 216
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 217 VGKTPIETLIRDMLLSGSSFN 237
>pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 107/216 (49%), Gaps = 12/216 (5%)
Query: 75 PPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL 134
P P P L + E+ +RLLF+++ W R + FQ L + L++ W ELF L
Sbjct: 27 PSPMPEYLNV----HYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTL 82
Query: 135 HLAQWSIPWDLSLLINC-------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDG 186
LAQ + LS ++ ++L D ++ V I +QE +L DG
Sbjct: 83 GLAQCAQVMSLSTILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDG 142
Query: 187 SECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246
E +KA++LF+P+ PGL +E Q+ AQ L DYV+ YS R R+L+ LP+
Sbjct: 143 YEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPA 202
Query: 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282
LR + + E LFF IG++ I ++ + ME +
Sbjct: 203 LRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETA 238
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q+ AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 159 PGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLARILVRLPALRLMSSNITEELFFTG 218
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 219 LIGNVSIDSIIPYILKMETA 238
>pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 37 CQAADKQL-FTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLA 95
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R + D +E GC++AV+LF P+ GL Q
Sbjct: 96 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTAVQ 155
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 156 EVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPI 215
Query: 270 QRLLGDM 276
L +M
Sbjct: 216 DTFLMEM 222
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 147 DAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFF 206
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 207 FKLIGDQPIDTFLMEM 222
>pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 55 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 114
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 115 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 174
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 175 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 233
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 158 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 217
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 218 FKLIGDTPIDTFLMEM 233
>pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 105/187 (56%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T + LF V+W + + F +L DQ+ LL+ W EL + + S+ ++++
Sbjct: 43 CQ-ATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLA 101
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ V V N +++ E++ + +++ D +E GC++A+IL+ P+ G+ Q
Sbjct: 102 TGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQ 161
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF + IGD+PI
Sbjct: 162 EVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPI 221
Query: 270 QRLLGDM 276
L +M
Sbjct: 222 DTFLMEM 228
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
G+ Q VEML+++ +L +Y R + +P RF +LLL LP+LR++ +E LFF +
Sbjct: 156 GIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKL 215
Query: 347 IGDIPIQRLLGDM 359
IGD+PI L +M
Sbjct: 216 IGDVPIDTFLMEM 228
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 274 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 333 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 452
Query: 270 QRLLGDM 276
L +M
Sbjct: 453 DTFLMEM 459
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 51 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 109
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 110 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 169
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 170 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 229
Query: 270 QRLLGDM 276
L +M
Sbjct: 230 DTFLMEM 236
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 161 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 220
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 221 FKLIGDTPIDTFLMEM 236
>pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L+ + V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 33 CQAADKQLVTL-VEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGILLA 91
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R + D +E GC++A++LF P+ GL D
Sbjct: 92 SGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGLTDPS 151
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 152 LVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 211
Query: 270 QRLLGDM 276
L +M
Sbjct: 212 DTFLMEM 218
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE L+++ L +Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 143 DAKGLTDPSLVESLREKVYASLEEYCKQQYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 202
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 203 FKLIGDTPIDTFLMEM 218
>pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 89 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 147
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 148 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 207
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 208 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 267
Query: 270 QRLLGDM 276
L +M
Sbjct: 268 DTFLMEM 274
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 199 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 258
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 259 FKLIGDTPIDTFLMEM 274
>pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 49 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 107
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 108 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 167
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 168 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 227
Query: 270 QRLLGDM 276
L +M
Sbjct: 228 DTFLMEM 234
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 159 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 218
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 219 FKLIGDTPIDTFLMEM 234
>pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 49 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 107
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 108 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 167
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 168 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 227
Query: 270 QRLLGDM 276
L +M
Sbjct: 228 DTFLMEM 234
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 159 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 218
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 219 FKLIGDTPIDTFLMEM 234
>pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 45 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 103
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 104 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 163
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 164 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 223
Query: 270 QRLLGDM 276
L +M
Sbjct: 224 DTFLMEM 230
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 155 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 214
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 215 FKLIGDTPIDTFLMEM 230
>pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 47 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 105
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 106 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 165
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 166 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 225
Query: 270 QRLLGDM 276
L +M
Sbjct: 226 DTFLMEM 232
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 157 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 216
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 217 FKLIGDTPIDTFLMEM 232
>pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 45 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 103
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 104 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 163
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 164 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 223
Query: 270 QRLLGDM 276
L +M
Sbjct: 224 DTFLMEM 230
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 155 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 214
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 215 FKLIGDTPIDTFLMEM 230
>pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 43 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 101
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 102 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 161
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 162 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 221
Query: 270 QRLLGDM 276
L +M
Sbjct: 222 DTFLMEM 228
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 153 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 212
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 213 FKLIGDTPIDTFLMEM 228
>pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 47 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 105
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 106 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 165
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 166 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 225
Query: 270 QRLLGDM 276
L +M
Sbjct: 226 DTFLMEM 232
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 157 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 216
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 217 FKLIGDTPIDTFLMEM 232
>pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 46 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 104
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 105 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 164
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 165 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 224
Query: 270 QRLLGDM 276
L +M
Sbjct: 225 DTFLMEM 231
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 156 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 215
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 216 FKLIGDTPIDTFLMEM 231
>pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 41 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 99
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 100 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 159
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 160 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 219
Query: 270 QRLLGDM 276
L +M
Sbjct: 220 DTFLMEM 226
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 151 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 210
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 211 FKLIGDTPIDTFLMEM 226
>pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 43 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 101
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 102 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 161
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 162 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 221
Query: 270 QRLLGDM 276
L +M
Sbjct: 222 DTFLMEM 228
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 153 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 212
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 213 FKLIGDTPIDTFLMEM 228
>pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 42 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 100
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 101 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 160
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 161 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 220
Query: 270 QRLLGDM 276
L +M
Sbjct: 221 DTFLMEM 227
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 152 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 211
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 212 FKLIGDTPIDTFLMEM 227
>pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 42 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 100
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 101 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 160
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 161 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 220
Query: 270 QRLLGDM 276
L +M
Sbjct: 221 DTFLMEM 227
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 152 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 211
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 212 FKLIGDTPIDTFLMEM 227
>pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 45 CQAADKQL-FTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASASHRSIAVKDGILLA 103
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 104 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 163
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 164 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 223
Query: 270 QRLLGDM 276
L +M
Sbjct: 224 DTFLMEM 230
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 155 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 214
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 215 FKLIGDTPIDTFLMEM 230
>pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 98/192 (51%), Gaps = 1/192 (0%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
+ R L V W + + F +L DQ++LL+ W EL + + SI S+L+
Sbjct: 65 KAADRQLVTLVEWAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDVKDSILLASG 124
Query: 153 KARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
R V +++ E++++ R + D +E GC++AV+LF P+ D+ +
Sbjct: 125 LHVHRHSAHQAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAVVLFNPDVKNPSDSAHI 184
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
E L+++ L Y R +Y QP RF +LLL LP+LR++ +E LFF + IGD PI +
Sbjct: 185 ESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDK 244
Query: 272 LLGDMYTMEKSY 283
L +M +
Sbjct: 245 FLMNMLETTSDF 256
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
D+ +E L+++ L Y R +Y QP RF +LLL LP+LR++ +E LFF + IGD
Sbjct: 180 DSAHIESLREKVYASLEAYCRSKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD 239
Query: 350 IPIQRLLGDMYTMEKSY 366
PI + L +M +
Sbjct: 240 TPIDKFLMNMLETTSDF 256
>pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 43 CQAADKQL-FTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 101
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 102 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 161
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 162 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 221
Query: 270 QRLLGDM 276
L +M
Sbjct: 222 DTFLMEM 228
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 153 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 212
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 213 FKLIGDTPIDTFLMEM 228
>pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 2/184 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ +L F V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 42 CQAADKQL-FTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 100
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 101 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 160
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 161 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 220
Query: 270 QRLL 273
L
Sbjct: 221 DTFL 224
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 152 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 211
Query: 344 KETIGDIPIQRLL 356
+ IGD PI L
Sbjct: 212 FKLIGDTPIDTFL 224
>pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 96/187 (51%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ R L+ + W + + F L DQ++LL+ W EL + + S+ +++
Sbjct: 70 CQ-AADRQLYQLIEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGIMLA 128
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC+++++LF PE GL Q
Sbjct: 129 TGLVVHRNCAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIVLFNPEAKGLKSTQ 188
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ IL +Y R Y Q RF +LLL LP+LR++ +E LFF + +G+ I
Sbjct: 189 QVENLREKVYAILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFFFKLVGNTSI 248
Query: 270 QRLLGDM 276
L M
Sbjct: 249 DSFLLSM 255
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
E GL Q VE L+++ IL +Y R Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 180 EAKGLKSTQQVENLREKVYAILEEYCRQTYPDQSGRFAKLLLRLPALRSIGLKCLEHLFF 239
Query: 344 KETIGDIPIQRLLGDM 359
+ +G+ I L M
Sbjct: 240 FKLVGNTSIDSFLLSM 255
>pdb|1PK5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|1PK5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|3F5C|A Chain A, Structure Of Dax-1:lrh-1 Complex
Length = 248
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + +I L+
Sbjct: 60 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTI-----FLVT 114
Query: 151 CEKARER--LPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E + +V NN + L QE++ R R L D E C+K ++LF+ + L +
Sbjct: 115 GEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENL 174
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP LRA+ + + L++K GD+P
Sbjct: 175 QLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVNGDVP 234
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 235 YNNLLIEM 242
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP LRA+ + + L
Sbjct: 165 SSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPELRAISKQAEDYL 224
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 225 YYKHVNGDVPYNNLLIEM 242
>pdb|1ZH7|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|1ZH7|B Chain B, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
Length = 243
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + +I L+
Sbjct: 55 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTI-----FLVT 109
Query: 151 CEKARER--LPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
E + +V NN + L QE++ R R L D E C+K ++LF+ + L +
Sbjct: 110 GEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENL 169
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L++K GD+P
Sbjct: 170 QLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVP 229
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 230 YNNLLIEM 237
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ + + L
Sbjct: 160 SSDVKNLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYL 219
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 220 YYKHVNGDVPYNNLLIEM 237
>pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 352
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 164 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 218
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 219 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 278
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 279 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 338
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 339 YNNLLIEM 346
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 269 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 328
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 329 YYKHLNGDVPYNNLLIEM 346
>pdb|1YUC|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|1YUC|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|4DOR|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
pdb|4DOR|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
Length = 255
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 67 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 121
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 122 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 181
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 182 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 241
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 242 YNNLLIEM 249
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 172 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 231
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 232 YYKHLNGDVPYNNLLIEM 249
>pdb|4DOS|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Dlpc And A Fragment Of Tif-2
Length = 242
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 57 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 111
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 112 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 171
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 172 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 231
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 232 YNNLLIEM 239
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 162 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 221
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 222 YYKHLNGDVPYNNLLIEM 239
>pdb|1ZDU|A Chain A, The Crystal Structure Of Human Liver Receptor Homologue-1
Length = 245
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 57 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 111
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 112 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 171
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 172 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 231
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 232 YNNLLIEM 239
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 162 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 221
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 222 YYKHLNGDVPYNNLLIEM 239
>pdb|3PLZ|A Chain A, Human Lrh1 Lbd Bound To Gr470
pdb|3PLZ|B Chain B, Human Lrh1 Lbd Bound To Gr470
Length = 257
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 69 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 123
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 124 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 183
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 184 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 243
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 244 YNNLLIEM 251
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 174 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 233
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 234 YYKHLNGDVPYNNLLIEM 251
>pdb|1YOK|A Chain A, Crystal Structure Of Human Lrh-1 Bound With Tif-2 Peptide
And Phosphatidylglycerol
Length = 256
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLLIN 150
LF V W R F+ L DQ+ LLQ W EL +L H + SI L+
Sbjct: 68 LFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSI-----FLVT 122
Query: 151 CEKARERLPPDDV--RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
++ + +NN + QE++A+ R L D E C+K ++LF+ + L +
Sbjct: 123 GQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENF 182
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIP 268
Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L++K GD+P
Sbjct: 183 QLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVP 242
Query: 269 IQRLLGDM 276
LL +M
Sbjct: 243 YNNLLIEM 250
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + Q VE +Q+Q L DY Y +Q +FG+LLL LP +RA+ E L
Sbjct: 173 SLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYL 232
Query: 342 FFKETIGDIPIQRLLGDM 359
++K GD+P LL +M
Sbjct: 233 YYKHLNGDVPYNNLLIEM 250
>pdb|1M7W|A Chain A, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|B Chain B, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|C Chain C, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|D Chain D, Hnf4a Ligand Binding Domain With Bound Fatty Acid
Length = 250
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 2/197 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
C+ +LL + V W + + F L DQ+ LL+ E LL + S+ + LL+
Sbjct: 47 CESMKEQLLVL-VEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLG 105
Query: 151 CEKARERLPPDDVRVNN-EIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ R P+ ++ I+++ E++ F++L D +E C+KA+I F P+ GL D
Sbjct: 106 NDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPG 165
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
++ L+ Q Q L DY+ R RFG LLL+LP+L+++ IE++ F + G I
Sbjct: 166 KIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKI 225
Query: 270 QRLLGDMYTMEKSYETP 286
LL +M + + P
Sbjct: 226 DNLLQEMLLGGSASDAP 242
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D ++ L+ Q Q L DY+ R RFG LLL+LP+L+++ IE++ F
Sbjct: 157 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 216
Query: 344 KETIGDIPIQRLLGDM 359
+ G I LL +M
Sbjct: 217 IKLFGMAKIDNLLQEM 232
>pdb|1PZL|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Src-1 Peptide
Length = 237
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Query: 88 AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSL 147
A+ C+ +LL + V W + + F L DQ+ LL+ E LL + S+ + L
Sbjct: 44 ADVCESMKEQLLVL-VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVL 102
Query: 148 LINCEKARERLPPDDVRVNN-EIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
L+ + R P+ ++ I+++ E++ F++L D +E +KA+I F P+ GL
Sbjct: 103 LLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLS 162
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D ++ L+ Q Q L DY+ R RFG LLL+LP+L+++ IE++ F + G
Sbjct: 163 DPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGM 222
Query: 267 IPIQRLLGDM 276
I LL +M
Sbjct: 223 AKIDNLLQEM 232
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D ++ L+ Q Q L DY+ R RFG LLL+LP+L+++ IE++ F
Sbjct: 157 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 216
Query: 344 KETIGDIPIQRLLGDM 359
+ G I LL +M
Sbjct: 217 IKLFGMAKIDNLLQEM 232
>pdb|3FS1|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Pgc-1a Fragment
Length = 230
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Query: 88 AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSL 147
A+ C+ +LL + V W + + F L DQ+ LL+ E LL + S+ + L
Sbjct: 38 ADVCESMKEQLLVL-VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVL 96
Query: 148 LINCEKARERLPPDDVRVNN-EIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
L+ + R P+ ++ I+++ E++ F++L D +E +KA+I F P+ GL
Sbjct: 97 LLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLS 156
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D ++ L+ Q Q L DY+ R RFG LLL+LP+L+++ IE++ F + G
Sbjct: 157 DPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGM 216
Query: 267 IPIQRLLGDM 276
I LL +M
Sbjct: 217 AKIDNLLQEM 226
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D ++ L+ Q Q L DY+ R RFG LLL+LP+L+++ IE++ F
Sbjct: 151 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 210
Query: 344 KETIGDIPIQRLLGDM 359
+ G I LL +M
Sbjct: 211 IKLFGMAKIDNLLQEM 226
>pdb|1VJB|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1VJB|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1TFC|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|1TFC|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|2P7A|A Chain A, Crystal Structure Of Estrogen Related Receptor G In
Complex With 3-Methyl Phenol
pdb|2P7G|A Chain A, X-Ray Structure Of Estrogen Related Receptor G In Complex
With Bisphenol A.
pdb|2P7Z|A Chain A, Estrogen Related Receptor Gamma In Complex With 4-Hydroxy-
Tamoxifen
Length = 251
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 14/187 (7%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + + W + + F TLS DQ+ LLQ +W E+ +L + S+ ++ L+ A +
Sbjct: 67 RELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVY----ADD 122
Query: 157 RLPPDD-------VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ +D + +NN I +++ +++ + + E +KA+ L ++ + D +
Sbjct: 123 YIMDEDQSKLAGLLDLNNAI---LQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVE 179
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
V+ LQD L DY G++ P R G++L+ LP LR ++ + + G +P+
Sbjct: 180 AVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPM 239
Query: 270 QRLLGDM 276
+L +M
Sbjct: 240 HKLFLEM 246
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
D + V+ LQD L DY G++ P R G++L+ LP LR ++ + + G
Sbjct: 177 DVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGK 236
Query: 350 IPIQRLLGDM 359
+P+ +L +M
Sbjct: 237 VPMHKLFLEM 246
>pdb|1S9Q|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
pdb|1S9Q|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
Length = 251
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 14/187 (7%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + + W + + F TLS DQ+ LLQ +W E+ +L + S+ ++ L+ A +
Sbjct: 67 RELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVY----ADD 122
Query: 157 RLPPDD-------VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ +D + +NN I +++ +++ + + E +KA+ L ++ + D +
Sbjct: 123 YIMDEDQSKLAGLLDLNNAI---LQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVE 179
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
V+ LQD L DY G++ P R G++L+ LP LR ++ + + G +P+
Sbjct: 180 AVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPM 239
Query: 270 QRLLGDM 276
+L +M
Sbjct: 240 HKLFLEM 246
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
D + V+ LQD L DY G++ P R G++L+ LP LR ++ + + G
Sbjct: 177 DVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGK 236
Query: 350 IPIQRLLGDM 359
+P+ +L +M
Sbjct: 237 VPMHKLFLEM 246
>pdb|1KV6|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|1KV6|B Chain B, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|2GP7|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|C Chain C, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|D Chain D, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GPO|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Synthetic Peptide From Rip140
pdb|2GPP|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPP|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPU|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen
pdb|2GPV|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|B Chain B, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|C Chain C, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|D Chain D, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|E Chain E, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|F Chain F, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
Length = 230
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 14/187 (7%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + + W + + F TLS DQ+ LLQ +W E+ +L + S+ ++ L+ A +
Sbjct: 46 RELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVY----ADD 101
Query: 157 RLPPDD-------VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ +D + +NN I +++ +++ + + E +KA+ L ++ + D +
Sbjct: 102 YIMDEDQSKLAGLLDLNNAI---LQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVE 158
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
V+ LQD L DY G++ P R G++L+ LP LR ++ + + G +P+
Sbjct: 159 AVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPM 218
Query: 270 QRLLGDM 276
+L +M
Sbjct: 219 HKLFLEM 225
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
D + V+ LQD L DY G++ P R G++L+ LP LR ++ + + G
Sbjct: 156 DVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGK 215
Query: 350 IPIQRLLGDM 359
+P+ +L +M
Sbjct: 216 VPMHKLFLEM 225
>pdb|1LV2|A Chain A, Hepatocyte Nuclear Factor 4 Is A Transcription Factor That
Constitutively Binds Fatty Acids
Length = 229
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 5/191 (2%)
Query: 88 AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSL 147
+ C+ +LL + V W + + F L DQ+ LL+ E LL + S+ + L
Sbjct: 38 GDVCESMKQQLLVL-VEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYKDIL 96
Query: 148 LI--NCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGL 205
L+ N R + RV N +++ E++ F+++ D +E C+KA++ F P+ GL
Sbjct: 97 LLGNNYVIHRNSCEVEISRVAN--RVLDELVRPFQEIQIDDNEYACLKAIVFFDPDAKGL 154
Query: 206 VDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIG 265
D ++ ++ Q Q L DY+ R RFG LLL+LP+L+++ IE++ F + G
Sbjct: 155 SDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFVKLFG 214
Query: 266 DIPIQRLLGDM 276
+ I LL +M
Sbjct: 215 MVKIDNLLQEM 225
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D ++ ++ Q Q L DY+ R RFG LLL+LP+L+++ IE++ F
Sbjct: 150 DAKGLSDPVKIKNMRFQVQIGLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 209
Query: 344 KETIGDIPIQRLLGDM 359
+ G + I LL +M
Sbjct: 210 VKLFGMVKIDNLLQEM 225
>pdb|1S9P|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|C Chain C, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|D Chain D, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
Length = 227
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 14/187 (7%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + + W + + F TLS DQ+ LLQ +W E+ +L + S+ ++ L+ A +
Sbjct: 43 RELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVY----ADD 98
Query: 157 RLPPDD-------VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ +D + +NN I +++ +++ + + E +KA+ L ++ + D +
Sbjct: 99 YIMDEDQSKLAGLLDLNNAI---LQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVE 155
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
V+ LQD L DY G++ P R G++L+ LP LR ++ + + G +P+
Sbjct: 156 AVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPM 215
Query: 270 QRLLGDM 276
+L +M
Sbjct: 216 HKLFLEM 222
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
D + V+ LQD L DY G++ P R G++L+ LP LR ++ + + G
Sbjct: 153 DVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGK 212
Query: 350 IPIQRLLGDM 359
+P+ +L +M
Sbjct: 213 VPMHKLFLEM 222
>pdb|2EWP|A Chain A, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|B Chain B, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|C Chain C, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|D Chain D, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|E Chain E, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
Length = 226
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 14/187 (7%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + + W + + F TLS DQ+ LLQ +W E+ +L + S+ ++ L+ A +
Sbjct: 42 RELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVY----ADD 97
Query: 157 RLPPDD-------VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ +D + +NN I +++ +++ + + E +KA+ L ++ + D +
Sbjct: 98 YIMDEDQSKLAGLLDLNNAI---LQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVE 154
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
V+ LQD L DY G++ P R G++L+ LP LR ++ + + G +P+
Sbjct: 155 AVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPM 214
Query: 270 QRLLGDM 276
+L +M
Sbjct: 215 HKLFLEM 221
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
D + V+ LQD L DY G++ P R G++L+ LP LR ++ + + G
Sbjct: 152 DVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGK 211
Query: 350 IPIQRLLGDM 359
+P+ +L +M
Sbjct: 212 VPMHKLFLEM 221
>pdb|2E2R|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol A
pdb|2ZAS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With 4-Alpha-Cumylphenol,
A Bisphenol A Derivative
pdb|2ZBS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Apo Form
pdb|2ZKC|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol Z
Length = 244
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 14/187 (7%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + + W + + F TLS DQ+ LLQ +W E+ +L + S+ ++ L+ A +
Sbjct: 59 RELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVY----ADD 114
Query: 157 RLPPDD-------VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ +D + +NN I +++ +++ + + E +KA+ L ++ + D +
Sbjct: 115 YIMDEDQSKLAGLLDLNNAI---LQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVE 171
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
V+ LQD L DY G++ P R G++L+ LP LR ++ + + G +P+
Sbjct: 172 AVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPM 231
Query: 270 QRLLGDM 276
+L +M
Sbjct: 232 HKLFLEM 238
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
D + V+ LQD L DY G++ P R G++L+ LP LR ++ + + G
Sbjct: 169 DVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGK 228
Query: 350 IPIQRLLGDM 359
+P+ +L +M
Sbjct: 229 VPMHKLFLEM 238
>pdb|1HG4|A Chain A, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|B Chain B, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|C Chain C, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|D Chain D, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|E Chain E, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|F Chain F, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
Length = 279
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 29/206 (14%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSI--------- 141
CQ + LF V + R + F + DQ++LL+ +W EL + ++A SI
Sbjct: 53 CQ-VVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAG 111
Query: 142 --PWDLSLLINCEKARERLPPDDVRVNNEI-----------------KLIQEILARFRQL 182
L + E+ L P + +N +++ E+ + ++L
Sbjct: 112 GGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRL 171
Query: 183 SPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLL 242
+ D E C+KA+IL+ P+ G+ +EM +++ L ++ R + RF +LLL
Sbjct: 172 NLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLL 231
Query: 243 MLPSLRAVRQSTIERLFFKETIGDIP 268
LP+LR++ + LF D P
Sbjct: 232 RLPALRSISLKCQDHLFLFRITSDRP 257
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
G+ +EM +++ L ++ R + RF +LLL LP+LR++ + LF
Sbjct: 193 GIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRI 252
Query: 347 IGDIP 351
D P
Sbjct: 253 TSDRP 257
>pdb|3F7D|A Chain A, Sf-1 Lbd Bound By Phosphatidylcholine
Length = 244
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPW---DLSLLINCEKARERLP 159
V W R F+ L DQ+ LLQ SW EL +L + + D LL+ ++ L
Sbjct: 60 VDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVE--LS 117
Query: 160 PDDVRVNNEIKLI----QEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQ 215
V+ + + + QE++ + L D E C+K +ILF+ + L + V+ Q
Sbjct: 118 TVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQ 177
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
++A L DY Y +F +LLL L +RA+ E L+ K ++P LL +
Sbjct: 178 EKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIE 237
Query: 276 M 276
M
Sbjct: 238 M 238
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + V+ Q++A L DY Y +F +LLL L +RA+ E L
Sbjct: 161 SLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYL 220
Query: 342 FFKETIGDIPIQRLLGDM 359
+ K ++P LL +M
Sbjct: 221 YHKHLGNEMPRNNLLIEM 238
>pdb|1YMT|A Chain A, Mouse Sf-1 Lbd
Length = 246
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPW---DLSLLINCEKARERLP 159
V W R F+ L DQ+ LLQ SW EL +L + + D LL+ ++ L
Sbjct: 62 VDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVE--LS 119
Query: 160 PDDVRVNNEIKLI----QEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQ 215
V+ + + + QE++ + L D E C+K +ILF+ + L + V+ Q
Sbjct: 120 TVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQ 179
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
++A L DY Y +F +LLL L +RA+ E L+ K ++P LL +
Sbjct: 180 EKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIE 239
Query: 276 M 276
M
Sbjct: 240 M 240
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + V+ Q++A L DY Y +F +LLL L +RA+ E L
Sbjct: 163 SLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQLLLSLVEVRALSMQAKEYL 222
Query: 342 FFKETIGDIPIQRLLGDM 359
+ K ++P LL +M
Sbjct: 223 YHKHLGNEMPRNNLLIEM 240
>pdb|1R1K|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO PONASTERONE A
pdb|1R20|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
BYI06830
pdb|2R40|A Chain A, Crystal Structure Of 20e Bound Ecr/usp
pdb|3IXP|A Chain A, Crystal Structure Of The Ecdysone Receptor Bound To
Byi08346
Length = 263
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 20/204 (9%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ ++ + V W R + F L DQ+LL++ SW EL L +A S+ +
Sbjct: 47 CQIGNKQIAALVV-WARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDG 105
Query: 151 CEKARER----------LPPDDVRVNNEI---------KLIQEILARFRQLSPDGSECGC 191
+ R +P + N+ + +++ E+ + R L D +E
Sbjct: 106 VDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVA 165
Query: 192 MKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVR 251
+KA+IL P+ GL + Q VE+L+++ L +Y R S + RF LLL LP+LR++
Sbjct: 166 LKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSIS 225
Query: 252 QSTIERLFFKETIGDIPIQRLLGD 275
+ E LFF + D I + D
Sbjct: 226 LKSFEHLFFFHLVADTSIAGYIRD 249
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + Q VE+L+++ L +Y R S + RF LLL LP+LR++ + E LFF
Sbjct: 175 DVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFF 234
Query: 344 KETIGDIPIQRLLGD 358
+ D I + D
Sbjct: 235 FHLVADTSIAGYIRD 249
>pdb|1G2N|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Ultraspiracle Protein Usp, The Ortholog Of Rxrs In
Insects
Length = 264
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 20/204 (9%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ ++ + V W R + F L DQ+LL++ SW EL L +A S+ +
Sbjct: 48 CQIGNKQIAALVV-WARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDG 106
Query: 151 CEKARER----------LPPDDVRVNNEI---------KLIQEILARFRQLSPDGSECGC 191
+ R +P + N+ + +++ E+ + R L D +E
Sbjct: 107 VDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVA 166
Query: 192 MKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVR 251
+KA+IL P+ GL + Q VE+L+++ L +Y R S + RF LLL LP+LR++
Sbjct: 167 LKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSIS 226
Query: 252 QSTIERLFFKETIGDIPIQRLLGD 275
+ E LFF + D I + D
Sbjct: 227 LKSFEHLFFFHLVADTSIAGYIRD 250
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + Q VE+L+++ L +Y R S + RF LLL LP+LR++ + E LFF
Sbjct: 176 DVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFF 235
Query: 344 KETIGDIPIQRLLGD 358
+ D I + D
Sbjct: 236 FHLVADTSIAGYIRD 250
>pdb|2XHS|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Fushi
Tarazu Factor 1 Of Drosophila Melanogaster
Length = 245
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 73/191 (38%), Gaps = 30/191 (15%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W R F+ L DQ LLQ SW + +L I L
Sbjct: 59 LFSQVDWARNTVFFKDLKVDDQXKLLQHSWSDXLVLDHLHHRIHNGL------------- 105
Query: 159 PPDDVRVNN-------EIKLI---------QEILARFRQLSPDGSECGCMKAVILFTPET 202
PD+ ++NN + L+ E+ + + L D + C K +IL P
Sbjct: 106 -PDETQLNNGQVFNLXSLGLLGVPQLGDYFNELQNKLQDLKFDXGDYVCXKFLILLNPSV 164
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
G+V+ + V D Q L DY Y +F L+ +LP + A + L+ K
Sbjct: 165 RGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILPEIHAXAVRGEDHLYTKH 224
Query: 263 TIGDIPIQRLL 273
G P Q LL
Sbjct: 225 CAGSAPTQTLL 235
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
G+V+ + V D Q L DY Y +F L+ +LP + A + L+ K
Sbjct: 166 GIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNILPEIHAXAVRGEDHLYTKHC 225
Query: 347 IGDIPIQRLL 356
G P Q LL
Sbjct: 226 AGSAPTQTLL 235
>pdb|1YP0|A Chain A, Structure Of The Steroidogenic Factor-1 Ligand Binding
Domain Bound To Phospholipid And A Shp Peptide Motif
Length = 239
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPW---DLSLLINCEKARERLP 159
V W R F+ L DQ+ LLQ W EL +L + + D LL+ ++ L
Sbjct: 56 VDWARRCMVFKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVE--LS 113
Query: 160 PDDVRVNNEIKLI----QEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQ 215
V+ + + + QE++ + L D E C+K +ILF+ + L + V+ Q
Sbjct: 114 TVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQ 173
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
++A L DY Y +F +LLL L +RA+ E L+ K ++P LL +
Sbjct: 174 EKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIE 233
Query: 276 M 276
M
Sbjct: 234 M 234
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + V+ Q++A L DY Y +F +LLL L +RA+ E L
Sbjct: 157 SLDVKFLNNHSLVKDAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYL 216
Query: 342 FFKETIGDIPIQRLLGDM 359
+ K ++P LL +M
Sbjct: 217 YHKHLGNEMPRNNLLIEM 234
>pdb|3F5C|B Chain B, Structure Of Dax-1:lrh-1 Complex
pdb|3F5C|C Chain C, Structure Of Dax-1:lrh-1 Complex
Length = 268
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 27/212 (12%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
C+ +A LL +R+V+ L FQ L QL+L++ W L +L LAQ + +++ +
Sbjct: 53 CEAASAGLL-KTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPE 111
Query: 151 CEKARERLP----------PDDVRVNNE----------------IKLIQEILARFRQLSP 184
+E L P + + + ++ I+ + L+
Sbjct: 112 TNTTQEMLTTRRQETEGPEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKSFFFKCWSLNI 171
Query: 185 DGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLML 244
D E +K +LF P+ PGL + +E LQ + Q IL +++R R L L
Sbjct: 172 DTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMMQREYQIRSAELNSAL 231
Query: 245 PSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
LR + + LFF+ IG + + ++ +M
Sbjct: 232 FLLRFINSDVVTELFFRPIIGAVSMDDMMLEM 263
>pdb|1OVL|B Chain B, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|C Chain C, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|E Chain E, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|F Chain F, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 105 WVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVR 164
W + F L K DQ LL + ++ ELF+L LA S P + L+ RL VR
Sbjct: 93 WAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQC--VR 150
Query: 165 VNNE-IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILG 223
E I I E + + + D S C+ A+ T E GL + + VE LQ++ L
Sbjct: 151 GFGEWIDSIVEFSSNLQNXNIDISAFSCIAALAXVT-ERHGLKEPKRVEELQNKIVNCLK 209
Query: 224 DYV---RGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
D+V G +R P +LL LP LR + ++R+F+
Sbjct: 210 DHVTFNNGGLNR-PNYLSKLLGKLPELRTLCTQGLQRIFY 248
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYV---RGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 340
E GL + + VE LQ++ L D+V G +R P +LL LP LR + ++R
Sbjct: 187 ERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNR-PNYLSKLLGKLPELRTLCTQGLQR 245
Query: 341 LFF 343
+F+
Sbjct: 246 IFY 248
>pdb|1OVL|A Chain A, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|D Chain D, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 105 WVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVR 164
W + F L K DQ LL + ++ ELF+L LA S P + L+ RL VR
Sbjct: 93 WAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQC--VR 150
Query: 165 VNNE-IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILG 223
E I I E + + + D S C+ A+ T E GL + + VE LQ++ L
Sbjct: 151 GFGEWIDSIVEFSSNLQNXNIDISAFSCIAALAXVT-ERHGLKEPKRVEELQNKIVNCLK 209
Query: 224 DYV---RGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
D+V G +R P +LL LP LR + ++R+F+
Sbjct: 210 DHVTFNNGGLNR-PNYLSKLLGKLPELRTLCTQGLQRIFY 248
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYV---RGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 340
E GL + + VE LQ++ L D+V G +R P +LL LP LR + ++R
Sbjct: 187 ERHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNR-PNYLSKLLGKLPELRTLCTQGLQR 245
Query: 341 LFF 343
+F+
Sbjct: 246 IFY 248
>pdb|2QW4|A Chain A, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|B Chain B, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|C Chain C, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|D Chain D, Human Nr4a1 Ligand-Binding Domain
Length = 273
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 104 RWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV 163
+W + F LS DQ LLL+ ++ ELF+L LA S P + L+ RL
Sbjct: 94 KWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQ---- 149
Query: 164 RVNNEIKLIQEILARFRQLSP---DGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
I ILA R L D C+ A++L T + GL + + VE LQ++
Sbjct: 150 CARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQNRIAS 208
Query: 221 ILGDYVRGRYSR-QPTR-FGRLLLMLPSLRAVRQSTIERLFF 260
L ++V QP RLL LP LR + ++R+F+
Sbjct: 209 CLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFY 250
>pdb|3V3E|B Chain B, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3E|A Chain A, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3Q|A Chain A, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
pdb|3V3Q|B Chain B, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
Length = 257
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
Query: 104 RWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV 163
+W + F LS DQ LLL+ ++ ELF+L LA S P + L+ RL
Sbjct: 70 KWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQC--- 126
Query: 164 RVNNEIKLIQEILARFRQLSP---DGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
I ILA R L D C+ A++L T + GL + + VE LQ++
Sbjct: 127 -ARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQNRIAS 184
Query: 221 ILGDYVRGRYSR-QPTR-FGRLLLMLPSLRAVRQSTIERLFF 260
L ++V QP RLL LP LR + ++R+F+
Sbjct: 185 CLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRIFY 226
>pdb|1YJE|A Chain A, Crystal Structure Of The Rngfi-B Ligand-Binding Domain
Length = 264
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 104 RWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV 163
+W + F LS DQ LLL+ ++ ELF+L LA S P + L+ RL
Sbjct: 85 KWAEKIPGFIELSPGDQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQC--- 141
Query: 164 RVNNEIKLIQEILARFRQLSPDGSEC---GCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
I ILA R L G + C+ A++L T + GL D + VE LQ++
Sbjct: 142 -ARGFGDWIDNILAFSRSLHSLGVDVPAFACLSALVLIT-DRHGLQDPRRVEELQNRIAS 199
Query: 221 ILGDYVRGRYSR-QPTR-FGRLLLMLPSLRAVRQSTIERLF 259
L +++ QP RLL LP LR + ++R+F
Sbjct: 200 CLKEHMAAVAGDPQPASCLSRLLGKLPELRTLCTQGLQRIF 240
>pdb|3FC6|B Chain B, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|D Chain D, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|B Chain B, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|D Chain D, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 266
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD--LSLLINCEKARERLPP 160
V + + L F LS+ DQ+ LL+ S E+ LL ++ P ++ L + RE
Sbjct: 88 VDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAK 147
Query: 161 DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
++V I I E +L + +E + A+ +F+ + P + D VE LQ
Sbjct: 148 AGLQVEF-INPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVE 206
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
L YV + P F R+L+ L SLR + E++F
Sbjct: 207 ALHAYVSINHPHDPLMFPRMLMKLVSLRTLSSVHSEQVF 245
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + P + D VE LQ L YV + P F R+L+ L SLR + E++
Sbjct: 185 SADRPNVQDQLQVERLQHTYVEALHAYVSINHPHDPLMFPRMLMKLVSLRTLSSVHSEQV 244
Query: 342 F 342
F
Sbjct: 245 F 245
>pdb|2ZL9|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZLA|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZLC|A Chain A, 2-Substituted-16-Ene-22-Thia-1alpha,25-Dihydroxy-26,27-
Dimethyl-19-Norvitamin D3 Analogs: Synthesis, Biological
Evaluation And Crystal Structure
pdb|2ZMH|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZMI|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZMJ|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Bound To
Adamantyl Vitamin D Analogs: Structural Basis For
Vitamin D Receptor Antagonism AndOR PARTIAL AGONISM
pdb|2ZXM|A Chain A, A New Class Of Vitamin D Receptor Ligands That Induce
Structural Rearrangement Of The Ligand-Binding Pocket
pdb|2ZXN|A Chain A, A New Class Of Vitamin D Receptor Ligands That Induce
Structural Rearrangement Of The Ligand-Binding Pocket
pdb|3AFR|A Chain A, Crystal Structure Of
Vdr-Lbd22S-Butyl-1a,24r-Dihydroxyvitamin D3 Complex
pdb|3VJS|A Chain A, Vitamin D Receptor Complex With A Carborane Compound
pdb|3VJT|A Chain A, Vitamin D Receptor Complex With A Carborane Compound
pdb|3VRT|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Mehylidene-19,25,26,27-
Tetranor-1alpha,24-Dihydroxyvitamind3
pdb|3VRU|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Methylidene-19,24-Dinor- 1alpha,25-Dihydroxy Vitamind3
pdb|3VRV|A Chain A, Vdr Ligand Binding Domain In Complex With
2-Methylidene-26,27-
Dimethyl-19,24-Dinor-1alpha,25-Dihydroxyvitamin D3
pdb|3VRW|A Chain A, Vdr Ligand Binding Domain In Complex With
22s-Butyl-2-Methylidene-26,
27-Dimethyl-19,24-Dinor-1alpha,25-Dihydroxyvitamin D3
Length = 271
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 80/159 (50%), Gaps = 12/159 (7%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ++LL+ S E+ +L Q D+S +C +
Sbjct: 85 VIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSW--DCGSQDYKYDVT 142
Query: 162 DV-RVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
DV + + ++LI+ ++ ++L+ E + A+ + +P+ PG+ DA+ VE +QD+
Sbjct: 143 DVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDR 202
Query: 218 AQCILGDYVRGRY----SRQPTRFGRLLLMLPSLRAVRQ 252
L Y+R R+ S Q + +++ L LR++ +
Sbjct: 203 LSNTLQTYIRCRHPPPGSHQ--LYAKMIQKLADLRSLNE 239
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRY----SRQPTRFGRLLLMLPSLRAVRQ 335
+ PG+ DA+ VE +QD+ L Y+R R+ S Q + +++ L LR++ +
Sbjct: 186 DRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQ--LYAKMIQKLADLRSLNE 239
>pdb|2ZFX|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Yr301 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|3A2H|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Tei-9647 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|3AUN|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With Yr335 And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
Length = 265
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 80/159 (50%), Gaps = 12/159 (7%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ++LL+ S E+ +L Q D+S +C +
Sbjct: 79 VIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSW--DCGSQDYKYDVT 136
Query: 162 DV-RVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
DV + + ++LI+ ++ ++L+ E + A+ + +P+ PG+ DA+ VE +QD+
Sbjct: 137 DVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDR 196
Query: 218 AQCILGDYVRGRY----SRQPTRFGRLLLMLPSLRAVRQ 252
L Y+R R+ S Q + +++ L LR++ +
Sbjct: 197 LSNTLQTYIRCRHPPPGSHQ--LYAKMIQKLADLRSLNE 233
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRY----SRQPTRFGRLLLMLPSLRAVRQ 335
+ PG+ DA+ VE +QD+ L Y+R R+ S Q + +++ L LR++ +
Sbjct: 180 DRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQ--LYAKMIQKLADLRSLNE 233
>pdb|2ACL|B Chain B, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|D Chain D, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|F Chain F, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|H Chain H, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
Length = 244
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD--LSLLINCEKARERLPP 160
V + + L F LS+ DQ+ LL+ S E+ LL ++ P ++ L + RE
Sbjct: 66 VDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAK 125
Query: 161 DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
++V I I E +L + +E + A+ +F+ + P + D VE LQ
Sbjct: 126 AGLQVEF-INPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVE 184
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
L YV + P F R+L+ L SLR + E++F
Sbjct: 185 ALHAYVSINHPHDPLMFPRMLMKLVSLRTLSSVHSEQVF 223
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + P + D VE LQ L YV + P F R+L+ L SLR + E++
Sbjct: 163 SADRPNVQDQLQVERLQHTYVEALHAYVSINHPHDPLMFPRMLMKLVSLRTLSSVHSEQV 222
Query: 342 F 342
F
Sbjct: 223 F 223
>pdb|1RJK|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2md And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|1RK3|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 1,25-Dihydroxyvitamin D3
And A Synthetic Peptide Containing The Nr2 Box Of Drip
205
pdb|1RKG|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2mbisp And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|1RKH|A Chain A, Crystal Structure Of The Rat Vitamin D Receptor Ligand
Binding Domain Complexed With 2am20r And A Synthetic
Peptide Containing The Nr2 Box Of Drip 205
pdb|2O4J|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Ligand Binding
Domain Complexed With Vitiii 17-20z And The Nr2 Box Of
Drip 205
pdb|2O4R|A Chain A, Crystal Structure Of Rat Vitamin D Receptor Ligand Binding
Domain Complexed With Vitiii 17-20e And The Nr2 Box Of
Drip 205
Length = 292
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 80/159 (50%), Gaps = 12/159 (7%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ++LL+ S E+ +L Q D+S +C +
Sbjct: 75 VIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSW--DCGSQDYKYDVT 132
Query: 162 DV-RVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
DV + + ++LI+ ++ ++L+ E + A+ + +P+ PG+ DA+ VE +QD+
Sbjct: 133 DVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDR 192
Query: 218 AQCILGDYVRGRY----SRQPTRFGRLLLMLPSLRAVRQ 252
L Y+R R+ S Q + +++ L LR++ +
Sbjct: 193 LSNTLQTYIRCRHPPPGSHQ--LYAKMIQKLADLRSLNE 229
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRY----SRQPTRFGRLLLMLPSLRAVRQ 335
+ PG+ DA+ VE +QD+ L Y+R R+ S Q + +++ L LR++ +
Sbjct: 176 DRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQ--LYAKMIQKLADLRSLNE 229
>pdb|3P8X|A Chain A, Synthesis, Structure, And Biological Activity Of Des-Side
Chain Analogues Of 1alpha,25-Dihydroxyvitamin D3 With
Substituents At C-18
Length = 280
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ++LL+ S E+ +L + D+S + + R+ D
Sbjct: 94 VIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVS-D 152
Query: 162 DVRVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQA 218
+ + ++LI+ ++ ++L+ E + A+ + +P+ PG+ DA +E +QD+
Sbjct: 153 VTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRL 212
Query: 219 QCILGDYVRGRYSRQPTR--FGRLLLMLPSLRAVRQ 252
L Y+R R+ + + +++ L LR++ +
Sbjct: 213 SNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNE 248
>pdb|3KMR|A Chain A, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With An Agonist Ligand (Am580) And A Coactivator
Fragment
pdb|3KMZ|B Chain B, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With The Inverse Agonist Bms493 And A
Corepressor Fragment
pdb|3KMZ|A Chain A, Crystal Structure Of Raralpha Ligand Binding Domain In
Complex With The Inverse Agonist Bms493 And A
Corepressor Fragment
Length = 266
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 72/171 (42%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
+K E + + + V + + L F TL+ DQ+ LL+ + ++ +L + P ++
Sbjct: 71 DKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMT 130
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+ R + L+ + L D +E G + A+ L + L
Sbjct: 131 FSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQP 190
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
V+MLQ+ L YVR R +P F ++L+ + LR++ ER+
Sbjct: 191 DRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVI 241
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 342
V+MLQ+ L YVR R +P F ++L+ + LR++ ER+
Sbjct: 193 VDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVI 241
>pdb|2FSZ|A Chain A, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
pdb|2FSZ|B Chain B, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
Length = 246
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 29/194 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ SW E+ ++ L SI + PD
Sbjct: 54 ISWAKKIPGFVELSLFDQVRLLESSWMEVLMMGLMWRSID---------HPGKLIFAPDL 104
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 105 VLDRDEGKSVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDA 164
Query: 209 ----QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 165 DSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMK 224
Query: 263 TIGDIPIQRLLGDM 276
+ +P+ LL +M
Sbjct: 225 SKNVVPVYDLLLEM 238
>pdb|1XV9|B Chain B, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XV9|D Chain D, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XVP|B Chain B, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
pdb|1XVP|D Chain D, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 246
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 10/183 (5%)
Query: 77 PHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHL 136
P P L +L + ++ +++ + L F++L DQ+ LL+ + E+ + L
Sbjct: 45 PLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVL 104
Query: 137 AQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARF----RQLSPDGSECGCM 192
+ L C R + D RV +++ + E+L F R+L E +
Sbjct: 105 NTTFCLQTQNFL--CGPLRYTIE-DGARVGFQVEFL-ELLFHFHGTLRKLQLQEPEYVLL 160
Query: 193 KAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRF--GRLLLMLPSLRAV 250
A+ LF+P+ PG+ ++ LQ++ L Y++G+ R RF +LL +L LR++
Sbjct: 161 AAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSI 220
Query: 251 RQS 253
++
Sbjct: 221 NEA 223
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRF--GRLLLMLPSLRAVRQS 336
PG+ ++ LQ++ L Y++G+ R RF +LL +L LR++ ++
Sbjct: 171 PGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEA 223
>pdb|1S0Z|A Chain A, Crystal Structure Of The Vdr Lbd Complexed To Seocalcitol.
pdb|1S19|A Chain A, Crystal Structure Of Vdr Ligand Binding Domain Complexed
To Calcipotriol.
pdb|1TXI|A Chain A, Crystal Structure Of The Vdr Ligand Binding Domain
Complexed To Tx522
pdb|2HAM|A Chain A, Crystal Structure Of Vdr Lbd Complexed To 2alpha-Propyl-
Calcitriol
pdb|2HAR|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2 Alpha-(3-
Hydroxy-1-Propoxy) Calcitriol
pdb|2HAS|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha-(1-
Propoxy) Calcitriol
pdb|2HB7|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha(3-
Hydroxy-1-Propyl) Calcitriol
pdb|2HB8|A Chain A, Crystal Structure Of Vdr Lbd In Complex With 2alpha-Methyl
Calcitriol
pdb|3CS4|A Chain A, Structure-Based Design Of A Superagonist Ligand For The
Vitamin D Nuclear Receptor
pdb|3CS6|A Chain A, Structure-Based Design Of A Superagonist Ligand For The
Vitamin D Nuclear Receptor
pdb|3A3Z|X Chain X, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Synthetic Agonist Compound 2alpha-Methyl-
Amcr277a(C23s)
pdb|3A40|X Chain X, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Synthetic Agonist Compound 2alpha-Methyl-
Amcr277b(C23r)
pdb|3A78|A Chain A, Crystal Structure Of The Human Vdr Ligand Binding Domain
Bound To The Natural Metabolite
1alpha,25-Dihydroxy-3-Epi-Vitamin D3
pdb|3AUQ|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With Yne-Diene Type Analog Of
Active 14-Epi-2alpha- Methyl-19-Norvitamin D3
pdb|3AUR|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With Yne-Diene Type Analog Of
Active 14-Epi-2beta- Methyl-19-Norvitamin D3
pdb|3AX8|A Chain A, Crystal Structure Of The Human Vitamin D Receptor Ligand
Binding Domain Complexed With
15alpha-Methoxy-1alpha,25-Dihydroxyvitamin D3
Length = 263
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ++LL+ S E+ +L + D+S + + R+ D
Sbjct: 77 VIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVS-D 135
Query: 162 DVRVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQA 218
+ + ++LI+ ++ ++L+ E + A+ + +P+ PG+ DA +E +QD+
Sbjct: 136 VTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRL 195
Query: 219 QCILGDYVRGRYSRQPTR--FGRLLLMLPSLRAVRQ 252
L Y+R R+ + + +++ L LR++ +
Sbjct: 196 SNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNE 231
>pdb|3B0T|A Chain A, Human Vdr Ligand Binding Domain In Complex With
Maxacalcitol
Length = 254
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ++LL+ S E+ +L + D+S + + R+ D
Sbjct: 72 VIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVS-D 130
Query: 162 DVRVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQA 218
+ + ++LI+ ++ ++L+ E + A+ + +P+ PG+ DA +E +QD+
Sbjct: 131 VTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRL 190
Query: 219 QCILGDYVRGRYSRQPTR--FGRLLLMLPSLRAVRQ 252
L Y+R R+ + + +++ L LR++ +
Sbjct: 191 SNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNE 226
>pdb|1DB1|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Complexed To Vitamin D
pdb|1IE8|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Kh1060
pdb|1IE9|A Chain A, Crystal Structure Of The Nuclear Receptor For Vitamin D
Ligand Binding Domain Bound To Mc1288
pdb|3OGT|A Chain A, Design, Chemical Synthesis, Functional Characterization
And Crystal Structure Of The Sidechain Analogue Of
1,25-Dihydroxyvitamin D3.
pdb|3KPZ|A Chain A, Crystal Structure Of A Novel Vitamin D3 Analogue, Zk203278
Showing Dissociated Profile
pdb|3TKC|A Chain A, Design, Synthesis, Evaluation And Structure Of Vitamin D
Analogues With Furan Side Chains
pdb|4G2I|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 259
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ++LL+ S E+ +L + D+S + + R+ D
Sbjct: 73 VIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVS-D 131
Query: 162 DVRVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQA 218
+ + ++LI+ ++ ++L+ E + A+ + +P+ PG+ DA +E +QD+
Sbjct: 132 VTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRL 191
Query: 219 QCILGDYVRGRYSRQPTR--FGRLLLMLPSLRAVRQ 252
L Y+R R+ + + +++ L LR++ +
Sbjct: 192 SNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNE 227
>pdb|3AZ1|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
pdb|3AZ2|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
pdb|3AZ3|A Chain A, Crystal Structure Analysis Of Vitamin D Receptor
Length = 253
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ++LL+ S E+ +L + D+S + + R+ D
Sbjct: 71 VIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVS-D 129
Query: 162 DVRVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQA 218
+ + ++LI+ ++ ++L+ E + A+ + +P+ PG+ DA +E +QD+
Sbjct: 130 VTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRL 189
Query: 219 QCILGDYVRGRYSRQPTR--FGRLLLMLPSLRAVRQ 252
L Y+R R+ + + +++ L LR++ +
Sbjct: 190 SNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNE 225
>pdb|4DQM|A Chain A, Revealing A Marine Natural Product As A Novel Agonist For
Retinoic Acid Receptors With A Unique Binding Mode And
Antitumor Activity
pdb|4DQM|C Chain C, Revealing A Marine Natural Product As A Novel Agonist For
Retinoic Acid Receptors With A Unique Binding Mode And
Antitumor Activity
Length = 234
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 72/171 (42%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
+K E + + + V + + L F TL+ DQ+ LL+ + ++ +L + P ++
Sbjct: 45 DKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMT 104
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+ R + L+ + L D +E G + A+ L + L
Sbjct: 105 FSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQP 164
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
V+MLQ+ L YVR R +P F ++L+ + LR++ ER+
Sbjct: 165 DRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVI 215
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 342
V+MLQ+ L YVR R +P F ++L+ + LR++ ER+
Sbjct: 167 VDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVI 215
>pdb|1DKF|B Chain B, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 235
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 72/171 (42%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
+K E + + + V + + L F TL+ DQ+ LL+ + ++ +L + P ++
Sbjct: 45 DKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMT 104
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+ R + L+ + L D +E G + A+ L + L
Sbjct: 105 FSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQP 164
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
V+MLQ+ L YVR R +P F ++L+ + LR++ ER+
Sbjct: 165 DRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVI 215
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 342
V+MLQ+ L YVR R +P F ++L+ + LR++ ER+
Sbjct: 167 VDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVI 215
>pdb|3M7R|A Chain A, Crystal Structure Of Vdr H305q Mutant
Length = 253
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 77/156 (49%), Gaps = 6/156 (3%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ++LL+ S E+ +L + D+S + + R+ D
Sbjct: 71 VIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVS-D 129
Query: 162 DVRVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQA 218
+ ++LI+ ++ ++L+ E + A+ + +P+ PG+ DA +E +QD+
Sbjct: 130 VTKAGQSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRL 189
Query: 219 QCILGDYVRGRYSRQPTR--FGRLLLMLPSLRAVRQ 252
L Y+R R+ + + +++ L LR++ +
Sbjct: 190 SNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNE 225
>pdb|3A9E|B Chain B, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 269
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 72/171 (42%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
+K E + + + V + + L F TL+ DQ+ LL+ + ++ +L + P ++
Sbjct: 74 DKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMT 133
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+ R + L+ + L D +E G + A+ L + L
Sbjct: 134 FSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQP 193
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
V+MLQ+ L YVR R +P F ++L+ + LR++ ER+
Sbjct: 194 DRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVI 244
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 294 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 342
V+MLQ+ L YVR R +P F ++L+ + LR++ ER+
Sbjct: 196 VDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVI 244
>pdb|1ZDT|A Chain A, The Crystal Structure Of Human Steroidogenic Factor-1
pdb|1ZDT|B Chain B, The Crystal Structure Of Human Steroidogenic Factor-1
Length = 241
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 5/179 (2%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLL-HL---AQWSIPWDLSLLINCEKARERL 158
V W R F+ L DQ+ LLQ W EL + H+ Q + L+ E +
Sbjct: 57 VDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTV 116
Query: 159 PPDDVRVNNEIKL-IQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
+ + + L QE++ + L D E C+K +ILF+ + L + V+ Q++
Sbjct: 117 ATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEK 176
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
A L DY Y +F +LLL L +RA+ E L+ K ++P LL +M
Sbjct: 177 ANAALLDYTLCHYPHSGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEM 235
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 298 QDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLG 357
Q++A L DY Y +F +LLL L +RA+ E L+ K ++P LL
Sbjct: 174 QEKANAALLDYTLCHYPHSGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLI 233
Query: 358 DM 359
+M
Sbjct: 234 EM 235
>pdb|3D24|A Chain A, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
pdb|3D24|C Chain C, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
Length = 253
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 4/184 (2%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R + + + W + + F +LS DQ+ +LQ W E+ +L +AQ S+P L + +
Sbjct: 64 REIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLD 123
Query: 157 RLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQD 216
+ + +++ R + L + E +KA+ L ++ + DA+ VE L++
Sbjct: 124 EEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLRE 183
Query: 217 QAQCILGDY----VRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
L +Y + R GRLLL LP LR + + + G +P+ +L
Sbjct: 184 ALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKL 243
Query: 273 LGDM 276
+M
Sbjct: 244 FLEM 247
>pdb|3A2I|A Chain A, Crystal Structure Of The Human Vitamin D Receptor (H305f)
Ligand Binding Domain Complexed With Tei-9647
Length = 263
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 77/156 (49%), Gaps = 6/156 (3%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ++LL+ S E+ +L + D+S + + R+ D
Sbjct: 77 VIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVS-D 135
Query: 162 DVRVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQA 218
+ ++LI+ ++ ++L+ E + A+ + +P+ PG+ DA +E +QD+
Sbjct: 136 VTKAGFSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRL 195
Query: 219 QCILGDYVRGRYSRQPTR--FGRLLLMLPSLRAVRQ 252
L Y+R R+ + + +++ L LR++ +
Sbjct: 196 SNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNE 231
>pdb|1PDU|A Chain A, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
pdb|1PDU|B Chain B, Ligand-Binding Domain Of Drosophila Orphan Nuclear
Receptor Dhr38
Length = 244
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
Query: 119 DQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILAR 178
DQ LL Q + ELF+L LA + D + LI C + I E
Sbjct: 80 DQELLFQSASLELFVLRLA-YRARIDDTKLIFCNGTVLHRTQCLRSFGEWLNDIMEFSRS 138
Query: 179 FRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR-- 236
L D S C+ A+ L T E GL + + VE LQ + L D+V Q +
Sbjct: 139 LHNLEIDISAFACLCALTLIT-ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHY 197
Query: 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 278
F RLL LP LR++ ++R+F+ + +P L+ +M+
Sbjct: 198 FSRLLGKLPELRSLSVQGLQRIFYLKLEDLVPAPALIENMFV 239
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR--FGRLLLMLPSLRAVRQSTIERL 341
E GL + + VE LQ + L D+V Q + F RLL LP LR++ ++R+
Sbjct: 160 ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRI 219
Query: 342 FFKETIGDIPIQRLLGDMYT 361
F+ + +P L+ +M+
Sbjct: 220 FYLKLEDLVPAPALIENMFV 239
>pdb|3A2J|A Chain A, Crystal Structure Of The Human Vitamin D Receptor
(H305fH397F) LIGAND Binding Domain Complexed With
Tei-9647
Length = 263
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 77/156 (49%), Gaps = 6/156 (3%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ++LL+ S E+ +L + D+S + + R+ D
Sbjct: 77 VIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVS-D 135
Query: 162 DVRVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQA 218
+ ++LI+ ++ ++L+ E + A+ + +P+ PG+ DA +E +QD+
Sbjct: 136 VTKAGFSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRL 195
Query: 219 QCILGDYVRGRYSRQPTR--FGRLLLMLPSLRAVRQ 252
L Y+R R+ + + +++ L LR++ +
Sbjct: 196 SNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNE 231
>pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
pdb|1L2J|B Chain B, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
Length = 271
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 29/196 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 76 ISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID---------HPGKLIFAPDL 126
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 127 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDA 186
Query: 209 ----QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 187 DSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMK 246
Query: 263 TIGDIPIQRLLGDMYT 278
+P+ LL +M
Sbjct: 247 CKNVVPVYDLLLEMLN 262
>pdb|3IPQ|A Chain A, X-Ray Structure Of Gw3965 Synthetic Agonist Bound To The
Lxr
pdb|3IPS|A Chain A, X-Ray Structure Of Benzisoxazole Synthetic Agonist Bound
To Alpha
pdb|3IPS|B Chain B, X-Ray Structure Of Benzisoxazole Synthetic Agonist Bound
To Alpha
pdb|3IPU|A Chain A, X-Ray Structure Of Benzisoxazole Urea Synthetic Agonist
Boun Lxr-Alpha
pdb|3IPU|B Chain B, X-Ray Structure Of Benzisoxazole Urea Synthetic Agonist
Boun Lxr-Alpha
Length = 283
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 3/159 (1%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD--LSLLINCEKARERLPP 160
V + + L F LS+ DQ+ LL+ S E+ LL ++ P ++ L + RE
Sbjct: 105 VDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAK 164
Query: 161 DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
++V I I E +L + +E + A+ +F+ + P + D VE LQ
Sbjct: 165 AGLQVEF-INPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVE 223
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
L YV + F R+L+ L SLR + E++F
Sbjct: 224 ALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVF 262
>pdb|2YLY|A Chain A, Sulfonamides As Selective Estrogen Receptor Beta Agonists.
pdb|2YLY|B Chain B, Sulfonamides As Selective Estrogen Receptor Beta Agonists
Length = 240
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 28/193 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 51 ISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID---------HPGKLIFAPDL 101
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 102 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDD 161
Query: 209 ---QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 263
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 162 SSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKC 221
Query: 264 IGDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 222 KNVVPVYDLLLEM 234
>pdb|2PJL|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
pdb|2PJL|B Chain B, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
Length = 247
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 16/190 (8%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIP------WDLSLLIN 150
R + + + W + + F +LS DQ+ +LQ W E+ +L +AQ S+P + L+++
Sbjct: 58 REIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLD 117
Query: 151 CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP 210
E AR + + +++ R + L + E +KA+ L ++ + DA+
Sbjct: 118 EEGARA------AGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEA 171
Query: 211 VEMLQDQAQCILGDY----VRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
VE L++ L +Y + R GRLLL LP LR + + + G
Sbjct: 172 VEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGK 231
Query: 267 IPIQRLLGDM 276
+P+ +L +M
Sbjct: 232 VPMHKLFLEM 241
>pdb|1XLS|E Chain E, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|F Chain F, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|G Chain G, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|H Chain H, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 242
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN--CEKARERLPP 160
+++ + L F++L+ DQ+ LL+ + E+ + L + C K
Sbjct: 67 IKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTENFFCGPLCYKME----- 121
Query: 161 DDVRVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
D V + + ++ IL + L E M A LF+P+ PG+ + ++ LQ++
Sbjct: 122 DAVHAGFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSPDRPGVTQREEIDQLQEE 181
Query: 218 AQCILGDYVRGRYSRQPTRF--GRLLLMLPSLRAVRQS 253
IL +++ + SR +RF +L+ +L LR++ +
Sbjct: 182 MALILNNHIMEQQSRLQSRFLYAKLMGLLADLRSINNA 219
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRF--GRLLLMLPSLRAVRQS 336
PG+ + ++ LQ++ IL +++ + SR +RF +L+ +L LR++ +
Sbjct: 167 PGVTQREEIDQLQEEMALILNNHIMEQQSRLQSRFLYAKLMGLLADLRSINNA 219
>pdb|1XNX|A Chain A, Crystal Structure Of Constitutive Androstane Receptor
pdb|1XNX|B Chain B, Crystal Structure Of Constitutive Androstane Receptor
Length = 256
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN--CEKARERLPP 160
+++ + L F++L+ DQ+ LL+ + E+ + L + C K
Sbjct: 81 IKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQTENFFCGPLCYKME----- 135
Query: 161 DDVRVNNEIKLIQEIL---ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
D V + + ++ IL + L E M A LF+P+ PG+ + ++ LQ++
Sbjct: 136 DAVHAGFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFSPDRPGVTQREEIDQLQEE 195
Query: 218 AQCILGDYVRGRYSRQPTRF--GRLLLMLPSLRAVRQS 253
IL +++ + SR +RF +L+ +L LR++ +
Sbjct: 196 MALILNNHIMEQQSRLQSRFLYAKLMGLLADLRSINNA 233
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRF--GRLLLMLPSLRAVRQS 336
PG+ + ++ LQ++ IL +++ + SR +RF +L+ +L LR++ +
Sbjct: 181 PGVTQREEIDQLQEEMALILNNHIMEQQSRLQSRFLYAKLMGLLADLRSINNA 233
>pdb|3ET0|A Chain A, Structure Of Ppargamma With 3-(5-Methoxy-1h-Indol-3-Yl)-
Propionic Acid
pdb|3ET0|B Chain B, Structure Of Ppargamma With 3-(5-Methoxy-1h-Indol-3-Yl)-
Propionic Acid
Length = 292
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 104 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 153
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 154 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 213
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 214 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 273
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 274 TETDMSLHPLLQEIY 288
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 209 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 268
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 269 QVIKKTETDMSLHPLLQEIY 288
>pdb|3BC5|A Chain A, X-Ray Crystal Structure Of Human Ppar Gamma With
2-(5-(3-(2-
(5-Methyl-2-Phenyloxazol-4-Yl)ethoxy)benzyl)-2-Phenyl-
2h-1, 2,3-Triazol-4-Yl)acetic Acid
Length = 296
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 108 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 157
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 158 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 217
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 218 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 277
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 278 TETDMSLHPLLQEIY 292
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 213 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 272
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 273 QVIKKTETDMSLHPLLQEIY 292
>pdb|3K6P|A Chain A, Estrogen Related Receptor Alpha In Complex With An Ether
Based Ligand
Length = 248
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 4/184 (2%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R + + + W + + F +LS DQ+ +LQ W E+ +L +AQ S+P L + +
Sbjct: 59 REIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLD 118
Query: 157 RLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQD 216
+ + +++ R + L + E +KA+ L ++ + DA+ VE L++
Sbjct: 119 EEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLRE 178
Query: 217 QAQCILGDY----VRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
L +Y + R GRLLL LP LR + + + G +P+ +L
Sbjct: 179 ALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKL 238
Query: 273 LGDM 276
+M
Sbjct: 239 FLEM 242
>pdb|2NV7|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
pdb|2NV7|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
Length = 238
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 48 ISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID---------HPGKLIFAPDL 98
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 99 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDA 158
Query: 209 ----QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 159 DSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMK 218
Query: 263 TIGDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 219 CKNVVPVYDLLLEM 232
>pdb|3OLL|A Chain A, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
pdb|3OLL|B Chain B, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
Length = 240
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 29/196 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 50 ISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID---------HPGKLIFAPDL 100
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 101 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDA 160
Query: 209 ----QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 161 DSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMK 220
Query: 263 TIGDIPIQRLLGDMYT 278
+P+ LL +M
Sbjct: 221 CKNVVPVXDLLLEMLN 236
>pdb|1XB7|A Chain A, X-Ray Structure Of Erralpha Lbd In Complex With A Pgc-
1alpha Peptide At 2.5a Resolution
Length = 247
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 4/184 (2%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R + + + W + + F +LS DQ+ +LQ W E+ +L +AQ S+P L + +
Sbjct: 58 REIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLD 117
Query: 157 RLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQD 216
+ + +++ R + L + E +KA+ L ++ + DA+ VE L++
Sbjct: 118 EEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLRE 177
Query: 217 QAQCILGDY----VRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
L +Y + R GRLLL LP LR + + + G +P+ +L
Sbjct: 178 ALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKL 237
Query: 273 LGDM 276
+M
Sbjct: 238 FLEM 241
>pdb|1X76|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X76|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X78|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X78|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X7B|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7B|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7J|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1X7J|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1U3Q|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|C Chain C, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|D Chain D, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3S|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|1U3S|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|3OLS|A Chain A, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OLS|B Chain B, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OMO|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMO|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|2YJD|A Chain A, Stapled Peptide Bound To Estrogen Receptor Beta
pdb|2YJD|B Chain B, Stapled Peptide Bound To Estrogen Receptor Beta
Length = 240
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 50 ISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID---------HPGKLIFAPDL 100
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 101 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDA 160
Query: 209 ----QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 161 DSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMK 220
Query: 263 TIGDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 221 CKNVVPVYDLLLEM 234
>pdb|3N00|A Chain A, Crystal Structure Of A Deletion Mutant Of Human Reverba
Ligand Binding Domain Bound With An Ncor Id1 Peptide
Determined To 2.60a
Length = 245
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
V + + + F+ LS+ DQ+ LL+ E+ ++ A D +++
Sbjct: 82 VEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGA 141
Query: 163 VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCIL 222
+ + + + + + + L+ E G AV+L + + G+ ++ VE LQ+ L
Sbjct: 142 MGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRAL 201
Query: 223 GDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
V + +RF +LLL LP LR + E+L
Sbjct: 202 RALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKL 237
>pdb|1YY4|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YY4|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YYE|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
pdb|1YYE|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
Length = 268
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 29/194 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI L+ PD
Sbjct: 48 ISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLI---------FAPDL 98
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 99 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDA 158
Query: 209 ----QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 159 DSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMK 218
Query: 263 TIGDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 219 CKNVVPVYDLLLEM 232
>pdb|3ET3|A Chain A, Structure Of Ppargamma With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 292
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 104 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 153
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 154 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 213
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 214 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 273
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 274 TETDMSLHPLLQEIY 288
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 209 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 268
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 269 QVIKKTETDMSLHPLLQEIY 288
>pdb|1ZAF|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
pdb|1ZAF|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
Length = 238
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 48 ISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID---------HPGKLIFAPDL 98
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 99 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSAMYPLVTATQDA 158
Query: 209 ----QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 159 DSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMK 218
Query: 263 TIGDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 219 CKNVVPVYDLLLEM 232
>pdb|2GIU|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With Compound 45
Length = 241
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 51 ISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID---------HPGKLIFAPDL 101
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 102 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDA 161
Query: 209 ----QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 162 DSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMK 221
Query: 263 TIGDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 222 CKNVVPVYDLLLEM 235
>pdb|1U9E|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U9E|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U3R|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
pdb|1U3R|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
Length = 241
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 50 ISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID---------HPGKLIFAPDL 100
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 101 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDA 160
Query: 209 ----QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 161 DSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMK 220
Query: 263 TIGDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 221 CKNVVPVYDLLLEM 234
>pdb|2OM9|A Chain A, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|B Chain B, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|C Chain C, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|2OM9|D Chain D, Ajulemic Acid, A Synthetic Cannabinoid Bound To Ppar Gamma
pdb|3SZ1|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Luteolin And Myristic Acid
pdb|3SZ1|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Luteolin And Myristic Acid
Length = 278
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 90 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 139
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 140 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 199
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 200 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 259
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 260 TETDMSLHPLLQEIY 274
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 195 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 254
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 255 QVIKKTETDMSLHPLLQEIY 274
>pdb|1QKM|A Chain A, Human Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Partial Agonist Genistein
Length = 255
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 56 ISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID---------HPGKLIFAPDL 106
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 107 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDA 166
Query: 209 ----QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 167 DSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMK 226
Query: 263 TIGDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 227 CKNVVPVYDLLLEM 240
>pdb|1K74|D Chain D, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides
Length = 283
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 95 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 144
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 145 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 204
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 205 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 264
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 265 TETDMSLHPLLQEIY 279
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 200 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 259
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 260 QVIKKTETDMSLHPLLQEIY 279
>pdb|1UHL|B Chain B, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 242
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 3/159 (1%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD--LSLLINCEKARERLPP 160
V + + L F LS+ DQ+ LL+ S E+ LL ++ P ++ L + RE
Sbjct: 64 VDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAK 123
Query: 161 DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
++V I I E +L + +E + A+ +F+ + P + D VE LQ
Sbjct: 124 AGLQVEF-INPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVE 182
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
L YV + F R+L+ L SLR + E++F
Sbjct: 183 ALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVF 221
>pdb|2I0G|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0G|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2JJ3|A Chain A, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2JJ3|B Chain B, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2Z4B|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2Z4B|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
Length = 257
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 62 ISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID---------HPGKLIFAPDL 112
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 113 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDA 172
Query: 209 ----QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 173 DSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMK 232
Query: 263 TIGDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 233 CKNVVPVYDLLLEM 246
>pdb|1YOW|A Chain A, Human Steroidogenic Factor 1 Lbd With Bound Co-Factor
Peptide
Length = 242
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 5/179 (2%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLL-HL---AQWSIPWDLSLLINCEKARERL 158
V W R F+ L DQ+ LLQ W EL + H+ Q + L+ E +
Sbjct: 58 VDWARRCMVFKELEVADQMTLLQNCWSELLVFDHIYRQVQHGKEGSILLVTGQEVELTTV 117
Query: 159 PPDDVRVNNEIKL-IQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
+ + + L QE++ + L D E C+K +ILF+ + L + V+ Q++
Sbjct: 118 ATQAGSLLHSLVLRAQELVLQLLALQLDRQEFVCLKFIILFSLDLKFLNNHILVKDAQEK 177
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
A L DY Y +F +LLL L +RA+ E L+ K ++P LL +M
Sbjct: 178 ANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEM 236
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 298 QDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLG 357
Q++A L DY Y +F +LLL L +RA+ E L+ K ++P LL
Sbjct: 175 QEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRNNLLI 234
Query: 358 DM 359
+M
Sbjct: 235 EM 236
>pdb|3PRG|A Chain A, Ligand Binding Domain Of Human Peroxisome Proliferator
Activated Receptor
Length = 278
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 90 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 139
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 140 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 199
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 200 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 259
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 260 TETDMSLHPLLQEIY 274
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 195 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 254
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 255 QVIKKTETDMSLHPLLQEIY 274
>pdb|3S9S|A Chain A, Ligand Binding Domain Of Ppargamma Complexed With A
Benzimidazole Partial Agonist
Length = 284
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 96 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 145
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 146 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 205
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 206 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 265
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 266 TETDMSLHPLLQEIY 280
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 201 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 260
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 261 QVIKKTETDMSLHPLLQEIY 280
>pdb|2Q59|A Chain A, Crystal Structure Of Ppargamma Lbd Bound To Full Agonist
Mrl20
Length = 274
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 86 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 135
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 136 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 195
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 196 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 255
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 256 TETDMSLHPLLQEIY 270
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 191 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 250
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 251 QVIKKTETDMSLHPLLQEIY 270
>pdb|1I7I|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With The Agonist Az 242
pdb|1I7I|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With The Agonist Az 242
Length = 292
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 104 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 153
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 154 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 213
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 214 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 273
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 274 TETDMSLHPLLQEIY 288
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 209 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 268
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 269 QVIKKTETDMSLHPLLQEIY 288
>pdb|3B0Q|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Mcc555
pdb|3B0Q|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Mcc555
pdb|3B0R|A Chain A, Human Ppar Gamma Ligand Binding Dmain Complexed With
Gw9662 In A Covalent Bonded Form
pdb|3B0R|B Chain B, Human Ppar Gamma Ligand Binding Dmain Complexed With
Gw9662 In A Covalent Bonded Form
Length = 274
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 87 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 136
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 137 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 196
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 197 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 256
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 257 TETDMSLHPLLQEIY 271
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 192 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 251
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 252 QVIKKTETDMSLHPLLQEIY 271
>pdb|3CS8|A Chain A, Structural And Biochemical Basis For The Binding
Selectivity Of Pparg To Pgc-1a
Length = 275
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 88 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 137
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 138 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 197
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 198 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 257
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 258 TETDMSLHPLLQEIY 272
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 193 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 252
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 253 QVIKKTETDMSLHPLLQEIY 272
>pdb|2Q59|B Chain B, Crystal Structure Of Ppargamma Lbd Bound To Full Agonist
Mrl20
pdb|2Q5P|A Chain A, Crystal Structure Of Ppargamma Bound To Partial Agonist
Mrl24
pdb|2Q5P|B Chain B, Crystal Structure Of Ppargamma Bound To Partial Agonist
Mrl24
pdb|2Q5S|A Chain A, Crystal Structure Of Ppargamma Bound To Partial Agonist
Ntzdpa
pdb|2Q5S|B Chain B, Crystal Structure Of Ppargamma Bound To Partial Agonist
Ntzdpa
pdb|2Q61|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain Bound
To Partial Agonist Sr145
pdb|2Q61|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain Bound
To Partial Agonist Sr145
pdb|2Q6R|A Chain A, Crystal Structure Of Ppar Gamma Complexed With Partial
Agonist Sf147
pdb|2Q6R|B Chain B, Crystal Structure Of Ppar Gamma Complexed With Partial
Agonist Sf147
pdb|2Q6S|A Chain A, 2.4 Angstrom Crystal Structure Of Ppar Gamma Complexed To
Bvt.13 Without Co-Activator Peptides
pdb|2Q6S|B Chain B, 2.4 Angstrom Crystal Structure Of Ppar Gamma Complexed To
Bvt.13 Without Co-Activator Peptides
Length = 274
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 86 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 135
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 136 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 195
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 196 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 255
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 256 TETDMSLHPLLQEIY 270
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 191 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 250
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 251 QVIKKTETDMSLHPLLQEIY 270
>pdb|3VN2|A Chain A, Crystal Structure Of Ppargamma Complexed With Telmisartan
Length = 285
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 97 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 146
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 147 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 206
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 207 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 266
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 267 TETDMSLHPLLQEIY 281
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 202 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 261
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 262 QVIKKTETDMSLHPLLQEIY 281
>pdb|3LMP|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3B1M|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator Cerco-A
pdb|3V9T|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3V9V|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|3V9Y|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
pdb|4F9M|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
Cercosporamide Derivative Modulator
Length = 283
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 95 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 144
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 145 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 204
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 205 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 264
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 265 TETDMSLHPLLQEIY 279
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 200 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 259
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 260 QVIKKTETDMSLHPLLQEIY 279
>pdb|2VV4|B Chain B, Hppargamma Ligand Binding Domain In Complex With 6-Oxoote
Length = 276
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 88 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 137
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 138 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 197
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 198 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 257
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 258 TETDMSLHPLLQEIY 272
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 193 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 252
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 253 QVIKKTETDMSLHPLLQEIY 272
>pdb|1NDE|A Chain A, Estrogen Receptor Beta With Selective Triazine Modulator
Length = 255
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 64 ISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID---------HPGKLIFAPDL 114
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDA---- 208
V +E K ++ IL +RFR+L E C+KA+IL LV A
Sbjct: 115 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDA 174
Query: 209 ----QPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+ +L ++ + S +Q R LL++L +R +E L +
Sbjct: 175 DSSRKLAHLLNAVTDALVWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMK 234
Query: 263 TIGDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 235 CKNVVPVYDLLLEM 248
>pdb|3OSI|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrachloro-Bisphenol A (Tcbpa)
pdb|3OSI|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrachloro-Bisphenol A (Tcbpa)
pdb|3OSW|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrabromo-Bisphenol A (Tbbpa)
pdb|3OSW|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tetrabromo-Bisphenol A (Tbbpa)
Length = 285
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 98 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 147
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 148 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 207
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 208 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 267
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 268 TETDMSLHPLLQEIY 282
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 203 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 262
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 263 QVIKKTETDMSLHPLLQEIY 282
>pdb|3ADS|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin
pdb|3ADS|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin
pdb|3ADT|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Hydroxy-Indole Acetate
pdb|3ADT|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Hydroxy-Indole Acetate
pdb|3ADU|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate
pdb|3ADU|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate
pdb|3ADV|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Serotonin
pdb|3ADV|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Serotonin
pdb|3ADW|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate And 15-Oxo-Eicosatetraenoic
Acid
pdb|3ADW|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
5-Methoxy-Indole Acetate And 15-Oxo-Eicosatetraenoic
Acid
pdb|3ADX|A Chain A, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin And Nitro-233
pdb|3ADX|B Chain B, Human Ppargamma Ligand-Binding Domain In Complex With
Indomethacin And Nitro-233
pdb|3R8I|A Chain A, Crystal Structure Of Ppargamma With An Achiral
Ureidofibrate Derivative (Rt86)
pdb|3R8I|B Chain B, Crystal Structure Of Ppargamma With An Achiral
Ureidofibrate Derivative (Rt86)
pdb|2YFE|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 1
pdb|2YFE|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 1
pdb|4A4V|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4V|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4W|A Chain A, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4A4W|B Chain B, Ligand Binding Domain Of Human Ppar Gamma In Complex With
Amorfrutin 2
pdb|4E4K|A Chain A, Crystal Structure Of Ppargamma With The Ligand Jo21
pdb|4E4K|B Chain B, Crystal Structure Of Ppargamma With The Ligand Jo21
pdb|4E4Q|A Chain A, Crystal Structure Of Ppargamma With The Ligand Fs214
pdb|4E4Q|B Chain B, Crystal Structure Of Ppargamma With The Ligand Fs214
Length = 287
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 99 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 148
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 149 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 208
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 209 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 268
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 269 TETDMSLHPLLQEIY 283
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 204 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 263
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 264 QVIKKTETDMSLHPLLQEIY 283
>pdb|2ZVT|A Chain A, Cys285ser Mutant Ppargamma Ligand-Binding Domain Complexed
With 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZVT|B Chain B, Cys285ser Mutant Ppargamma Ligand-Binding Domain Complexed
With 15-Deoxy-Delta12,14-Prostaglandin J2
Length = 286
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 99 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 148
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 149 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 208
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 209 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 268
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 269 TETDMSLHPLLQEIY 283
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 204 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 263
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 264 QVIKKTETDMSLHPLLQEIY 283
>pdb|1KNU|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With A Synthetic
Agonist
pdb|1KNU|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With A Synthetic
Agonist
pdb|2XKW|A Chain A, Ligand Binding Domain Of Human Ppar-Gamma In Complex With
The Agonist Pioglitazone
pdb|2XKW|B Chain B, Ligand Binding Domain Of Human Ppar-Gamma In Complex With
The Agonist Pioglitazone
pdb|3R5N|A Chain A, Crystal Structure Of Ppargammalbd Complexed With The
Agonist Magnolol
Length = 274
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 86 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 135
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 136 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 195
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 196 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 255
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 256 TETDMSLHPLLQEIY 270
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 191 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 250
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 251 QVIKKTETDMSLHPLLQEIY 270
>pdb|2HFP|A Chain A, Crystal Structure Of Ppar Gamma With N-Sulfonyl-2-Indole
Carboxamide Ligands
Length = 282
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 94 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 143
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 144 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 203
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 204 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 263
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 264 TETDMSLHPLLQEIY 278
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 199 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 258
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 259 QVIKKTETDMSLHPLLQEIY 278
>pdb|3PBA|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Monosulfate Tetrabromo-Bisphenol A
(Monotbbpa)
pdb|3PBA|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Monosulfate Tetrabromo-Bisphenol A
(Monotbbpa)
pdb|3PO9|A Chain A, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tripropyltin
pdb|3PO9|B Chain B, Crystal Structure Of Ppargamma Ligand Binding Domain In
Complex With Tripropyltin
Length = 286
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 98 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 147
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 148 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 207
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 208 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 267
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 268 TETDMSLHPLLQEIY 282
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 203 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 262
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 263 QVIKKTETDMSLHPLLQEIY 282
>pdb|3T03|A Chain A, Crystal Structure Of Ppar Gamma Ligand Binding Domain In
Complex With A Novel Partial Agonist Gq-16
pdb|3T03|B Chain B, Crystal Structure Of Ppar Gamma Ligand Binding Domain In
Complex With A Novel Partial Agonist Gq-16
Length = 284
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 96 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 145
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 146 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 205
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 206 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 265
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 266 TETDMSLHPLLQEIY 280
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 201 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 260
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 261 QVIKKTETDMSLHPLLQEIY 280
>pdb|2VSR|A Chain A, Hppargamma Ligand Binding Domain In Complex With
9-(S)-Hode
pdb|2VSR|B Chain B, Hppargamma Ligand Binding Domain In Complex With
9-(S)-Hode
pdb|2VST|A Chain A, Hppargamma Ligand Binding Domain In Complex With 13-(S)-
Hode
pdb|2VST|B Chain B, Hppargamma Ligand Binding Domain In Complex With 13-(S)-
Hode
pdb|2VV0|A Chain A, Hppargamma Ligand Binding Domain In Complex With Dha
pdb|2VV0|B Chain B, Hppargamma Ligand Binding Domain In Complex With Dha
pdb|2VV1|A Chain A, Hppargamma Ligand Binding Domain In Complex With 4-Hdha
pdb|2VV2|A Chain A, Hppargamma Ligand Binding Domain In Complex With 5-Hepa
pdb|2VV2|B Chain B, Hppargamma Ligand Binding Domain In Complex With 5-Hepa
pdb|2VV3|A Chain A, Hppargamma Ligand Binding Domain In Complex With 4-Oxodha
pdb|2VV3|B Chain B, Hppargamma Ligand Binding Domain In Complex With 4-Oxodha
pdb|2VV4|A Chain A, Hppargamma Ligand Binding Domain In Complex With 6-Oxoote
Length = 276
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 88 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 137
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 138 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 197
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 198 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 257
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 258 TETDMSLHPLLQEIY 272
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 193 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 252
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 253 QVIKKTETDMSLHPLLQEIY 272
>pdb|1NYX|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With An Agonist
pdb|1NYX|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma In Complex With An Agonist
Length = 276
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 88 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 137
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 138 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 197
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 198 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 257
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 258 TETDMSLHPLLQEIY 272
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 193 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 252
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 253 QVIKKTETDMSLHPLLQEIY 272
>pdb|2VV1|B Chain B, Hppargamma Ligand Binding Domain In Complex With 4-Hdha
Length = 276
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 88 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 137
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 138 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 197
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 198 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 257
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 258 TETDMSLHPLLQEIY 272
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 193 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 252
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 253 QVIKKTETDMSLHPLLQEIY 272
>pdb|2I4J|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Agonist Lt160 (Ureidofibrate Derivative)
pdb|2I4J|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Agonist Lt160 (Ureidofibrate Derivative)
pdb|2I4P|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative).
Structure Obtained From Crystals Of The Apo-Form Soaked
For 30 Days.
pdb|2I4P|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative).
Structure Obtained From Crystals Of The Apo-Form Soaked
For 30 Days.
pdb|2I4Z|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative). This
Structure Has Been Obtained From Crystals Soaked For 6
Hours.
pdb|2I4Z|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Partial Agonist Lt127 (Ureidofibrate Derivative). This
Structure Has Been Obtained From Crystals Soaked For 6
Hours.
pdb|3B3K|A Chain A, Crystal Structure Of The Complex Between Ppargamma And The
Full Agonist Lt175
pdb|3B3K|B Chain B, Crystal Structure Of The Complex Between Ppargamma And The
Full Agonist Lt175
pdb|3CDS|A Chain A, Crystal Structure Of The Complex Between Ppar-Gamma And
The Agonist Lt248 (Clofibric Acid Analogue)
pdb|3CDS|B Chain B, Crystal Structure Of The Complex Between Ppar-Gamma And
The Agonist Lt248 (Clofibric Acid Analogue)
pdb|3D6D|A Chain A, Crystal Structure Of The Complex Between Ppargamma Lbd And
The Lt175(R-Enantiomer)
pdb|3D6D|B Chain B, Crystal Structure Of The Complex Between Ppargamma Lbd And
The Lt175(R-Enantiomer)
pdb|3CDP|A Chain A, Crystal Structure Of Ppar-Gamma Lbd Complexed With A
Partial Agonist, Analogue Of Clofibric Acid
pdb|3CDP|B Chain B, Crystal Structure Of Ppar-Gamma Lbd Complexed With A
Partial Agonist, Analogue Of Clofibric Acid
pdb|2ZK0|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain
pdb|2ZK0|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain
pdb|2ZK1|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With
15-Deoxy-Delta12,14- Prostaglandin J2
pdb|2ZK1|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With
15-Deoxy-Delta12,14- Prostaglandin J2
pdb|2ZK2|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Glutathion
Conjugated 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZK2|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Glutathion
Conjugated 15-Deoxy-Delta12,14-Prostaglandin J2
pdb|2ZK3|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 8-Oxo-
Eicosatetraenoic Acid
pdb|2ZK3|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 8-Oxo-
Eicosatetraenoic Acid
pdb|2ZK4|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 15-Oxo-
Eicosatetraenoic Acid
pdb|2ZK4|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With 15-Oxo-
Eicosatetraenoic Acid
pdb|2ZK5|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Nitro-233
pdb|2ZK5|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With Nitro-233
pdb|2ZK6|A Chain A, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With C8-Bodipy
pdb|2ZK6|B Chain B, Human Peroxisome Proliferator-Activated Receptor Gamma
Ligand Binding Domain Complexed With C8-Bodipy
pdb|2ZNO|A Chain A, Human Pprr Gamma Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|2ZNO|B Chain B, Human Pprr Gamma Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp703
pdb|3HO0|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HO0|B Chain B, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HOD|A Chain A, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3HOD|B Chain B, Crystal Structure Of The Ppargamma-Lbd Complexed With A
New Aryloxy-3phenylpropanoic Acid
pdb|3AN3|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo3s
pdb|3AN3|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo3s
pdb|3AN4|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo4r
pdb|3AN4|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With A
Gamma Selective Agonist Mo4r
pdb|3VJH|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl35
pdb|3VJH|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl35
pdb|3VJI|A Chain A, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl53
pdb|3VJI|B Chain B, Human Ppar Gamma Ligand Binding Domain In Complex With
Jkpl53
Length = 286
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 99 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 148
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 149 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 208
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 209 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 268
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 269 TETDMSLHPLLQEIY 283
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 204 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 263
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 264 QVIKKTETDMSLHPLLQEIY 283
>pdb|1ZEO|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With An Alpha-Aryloxyphenylacetic Acid
Agonist
pdb|1ZEO|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With An Alpha-Aryloxyphenylacetic Acid
Agonist
pdb|2P4Y|A Chain A, Crystal Structure Of Human Ppar-Gamma-Ligand Binding
Domain Complexed With An Indole-Based Modulator
pdb|2P4Y|B Chain B, Crystal Structure Of Human Ppar-Gamma-Ligand Binding
Domain Complexed With An Indole-Based Modulator
pdb|3TY0|A Chain A, Structure Of Ppargamma Ligand Binding Domain In Complex
With (R)-5-(3-
((3-(6-Methoxybenzo[d]isoxazol-3-Yl)-2-Oxo-2,
3-Dihydro-1h-
Benzo[d]imidazol-1-Yl)methyl)phenyl)-5-
Methyloxazolidine-2,4-Dione
pdb|3TY0|B Chain B, Structure Of Ppargamma Ligand Binding Domain In Complex
With (R)-5-(3-
((3-(6-Methoxybenzo[d]isoxazol-3-Yl)-2-Oxo-2,
3-Dihydro-1h-
Benzo[d]imidazol-1-Yl)methyl)phenyl)-5-
Methyloxazolidine-2,4-Dione
Length = 277
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 89 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 138
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 139 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 198
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 199 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 258
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 259 TETDMSLHPLLQEIY 273
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 194 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 253
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 254 QVIKKTETDMSLHPLLQEIY 273
>pdb|1FM6|D Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|X Chain X, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|D Chain D, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1ZGY|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|2POB|A Chain A, Ppargamma Ligand Binding Domain Complexed With A
Farglitazar Analogue Gw4709
pdb|2POB|B Chain B, Ppargamma Ligand Binding Domain Complexed With A
Farglitazar Analogue Gw4709
pdb|3FUR|A Chain A, Crystal Structure Of Pparg In Complex With Int131
pdb|3H0A|D Chain D, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
pdb|3K8S|A Chain A, Crystal Structure Of Pparg In Complex With T2384
pdb|3K8S|B Chain B, Crystal Structure Of Pparg In Complex With T2384
pdb|3KMG|A Chain A, The X-Ray Crystal Structure Of Ppar-Gamma In Complex With
An Indole Derivative Modulator, Gsk538, And An Src-1
Peptide
pdb|3KMG|D Chain D, The X-Ray Crystal Structure Of Ppar-Gamma In Complex With
An Indole Derivative Modulator, Gsk538, And An Src-1
Peptide
Length = 272
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 84 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 133
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 134 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 193
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 194 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 253
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 254 TETDMSLHPLLQEIY 268
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 189 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 248
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 249 QVIKKTETDMSLHPLLQEIY 268
>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Antagonist Raloxifene
pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Pure Antioestrogen Ici164,384
Length = 255
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 29/194 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 56 IGWAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSID---------HPGKLIFAPDL 106
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP-- 210
V +E K ++ IL +RFR+L E C+KA+IL L A
Sbjct: 107 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLASANQEA 166
Query: 211 ------VEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+L ++ + S +Q R LL++L +R + +E L +
Sbjct: 167 ESSRKLTHLLNAVTDALVWVIAKSGISSQQQSVRLANLLMLLSHVRHISNKGMEHLLSMK 226
Query: 263 TIGDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 227 CKNVVPVYDLLLEM 240
>pdb|2J7X|A Chain A, Structure Of Estradiol-bound Estrogen Receptor Beta Lbd In
Complex With Lxxll Motif From Ncoa5
pdb|2J7Y|A Chain A, Structure Of 17-Epiestriol-Bound Estrogen Receptor Beta
Lbd In Complex With Lxxll Motif From Ncoa5
Length = 255
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 29/194 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ W + + F LS DQ+ LL+ W E+ ++ L SI + PD
Sbjct: 56 IGWAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSID---------HPGKLIFAPDL 106
Query: 163 VRVNNEIKLIQEIL----------ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP-- 210
V +E K ++ IL +RFR+L E C+KA+IL L A
Sbjct: 107 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLASANQEA 166
Query: 211 ------VEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
+L ++ + S +Q R LL++L +R + +E L +
Sbjct: 167 ESSRKLTHLLNAVTDALVWVIAKSGISSQQQSVRLANLLMLLSHVRHISNKGMEHLLSMK 226
Query: 263 TIGDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 227 CKNVVPVYDLLLEM 240
>pdb|3R8A|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Compound With Dual Ppar
Gamma Agonism And Angiotensin Ii Type I Receptor
Antagonism Activity
pdb|3R8A|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Compound With Dual Ppar
Gamma Agonism And Angiotensin Ii Type I Receptor
Antagonism Activity
Length = 282
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 94 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 143
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 144 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 203
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 204 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 263
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 264 TETDMSLHPLLQEIY 278
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 199 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 258
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 259 QVIKKTETDMSLHPLLQEIY 278
>pdb|1WM0|X Chain X, Ppargamma In Complex With A 2-Baba Compound
Length = 292
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 104 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 153
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 154 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 213
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 214 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 273
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 274 TETDMSLHPLLQEIY 288
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 209 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 268
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 269 QVIKKTETDMSLHPLLQEIY 288
>pdb|3U9Q|A Chain A, Ligand Binding Domain Of Ppargamma Complexed With Decanoic
Acid And Pgc-1a Peptide
Length = 269
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 174 EILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ 233
E +F L D S+ AVI+ + + PGL++ +P+E +QD L ++ +
Sbjct: 162 EFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPES 221
Query: 234 PTRFGRLLLMLPSLRAVRQSTIERL-FFKETIGDIPIQRLLGDMY 277
F +LL + LR + ++ L K+T D+ + LL ++Y
Sbjct: 222 SQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIY 266
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 187 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 246
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 247 QVIKKTETDMSLHPLLQEIY 266
>pdb|4PRG|A Chain A, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|B Chain B, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|C Chain C, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|4PRG|D Chain D, 0072 Partial Agonist Ppar Gamma Cocrystal
pdb|1PRG|A Chain A, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|1PRG|B Chain B, Ligand Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2QMV|A Chain A, High Resolution Structure Of Peroxisone
Proliferation-Activated Receptor Gamma And
Characterisation Of Its Interaction With The Co-
Activator Transcriptional Intermediary Factor 2
Length = 270
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 174 EILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ 233
E +F L D S+ AVI+ + + PGL++ +P+E +QD L ++ +
Sbjct: 163 EFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPES 222
Query: 234 PTRFGRLLLMLPSLRAVRQSTIERL-FFKETIGDIPIQRLLGDMY 277
F +LL + LR + ++ L K+T D+ + LL ++Y
Sbjct: 223 SQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIY 267
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 188 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 247
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 248 QVIKKTETDMSLHPLLQEIY 267
>pdb|3CWD|A Chain A, Molecular Recognition Of Nitro-Fatty Acids By Ppar Gamma
pdb|3CWD|B Chain B, Molecular Recognition Of Nitro-Fatty Acids By Ppar Gamma
Length = 270
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 82 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 131
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 132 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 191
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 192 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 251
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 252 TETDMSLHPLLQEIY 266
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 187 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 246
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 247 QVIKKTETDMSLHPLLQEIY 266
>pdb|1RDT|D Chain D, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
Length = 284
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 14/195 (7%)
Query: 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS 146
S E QE T + + + F L DQ+ LL+ E+ LA S+
Sbjct: 96 SVEAVQEIT--------EYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDG 145
Query: 147 LLINCEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETP 203
+LI+ + RE L + ++ E +F L D S+ AVI+ + + P
Sbjct: 146 VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP 205
Query: 204 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKE 262
GL++ +P+E +QD L ++ + F +LL + LR + ++ L K+
Sbjct: 206 GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKK 265
Query: 263 TIGDIPIQRLLGDMY 277
T D+ + LL ++Y
Sbjct: 266 TETDMSLHPLLQEIY 280
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 201 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 260
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 261 QVIKKTETDMSLHPLLQEIY 280
>pdb|2PRG|A Chain A, Ligand-Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2PRG|B Chain B, Ligand-Binding Domain Of The Human Peroxisome Proliferator
Activated Receptor Gamma
pdb|2F4B|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With An Agonist
pdb|2F4B|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma In Complex With An Agonist
pdb|2FVJ|A Chain A, A Novel Anti-adipogenic Partial Agonist Of Peroxisome
Proliferator- Activated Receptor-gamma (pparg) Recruits
Pparg-coactivator-1 Alpha (pgc1a) But Potentiates
Insulin Signaling In Vitro
pdb|2G0G|A Chain A, Structure-based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-ray
Crystallography And In Vitro/in Vivo Biological
Activities
pdb|2G0G|B Chain B, Structure-based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-ray
Crystallography And In Vitro/in Vivo Biological
Activities
pdb|2G0H|A Chain A, Structure-Based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-Ray
Crystallography And In VitroIN VIVO BIOLOGICAL
ACTIVITIES
pdb|2G0H|B Chain B, Structure-Based Drug Design Of A Novel Family Of Ppar
Partial Agonists: Virtual Screening, X-Ray
Crystallography And In VitroIN VIVO BIOLOGICAL
ACTIVITIES
pdb|2ATH|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma Im Complex With An Agonist
pdb|2ATH|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Ppar-Gamma Im Complex With An Agonist
pdb|2GTK|A Chain A, Structure-Based Design Of Indole Propionic Acids As Novel
Pparag Co-Agonists
pdb|2HWQ|A Chain A, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWQ|B Chain B, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWR|A Chain A, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2HWR|B Chain B, Structural Basis For The Structure-Activity Relationships
Of Peroxisome Proliferator-Activated Receptor Agonists
pdb|2Q8S|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
AGONIST
pdb|2Q8S|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
AGONIST
pdb|3G9E|A Chain A, Aleglitaar. A New. Potent, And Balanced Dual PparaG
AGONIST For The Treatment Of Type Ii Diabetes
pdb|3IA6|A Chain A, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
Agonist
pdb|3IA6|B Chain B, X-Ray Crystal Structure Of The Nuclear Hormone Receptor
Ppar-Gamma In A Complex With A Ppar GammaALPHA DUAL
Agonist
pdb|3FEJ|A Chain A, Design And Biological Evaluation Of Novel, Balanced Dual
PparaG AGONISTS
pdb|3GBK|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With A Potent And Selective Agonist
pdb|3GBK|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complexed With A Potent And Selective Agonist
pdb|3NOA|A Chain A, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complex With A Potency Improved Agonist
pdb|3NOA|B Chain B, Crystal Structure Of Human Ppar-Gamma Ligand Binding
Domain Complex With A Potency Improved Agonist
pdb|3QT0|A Chain A, Revealing A Steroid Receptor Ligand As A Unique Ppargamma
Agonist
Length = 271
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 174 EILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ 233
E +F L D S+ AVI+ + + PGL++ +P+E +QD L ++ +
Sbjct: 163 EFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPES 222
Query: 234 PTRFGRLLLMLPSLRAVRQSTIERL-FFKETIGDIPIQRLLGDMY 277
F +LL + LR + ++ L K+T D+ + LL ++Y
Sbjct: 223 SQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIY 267
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 188 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 247
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 248 QVIKKTETDMSLHPLLQEIY 267
>pdb|1UOM|A Chain A, The Structure Of Estrogen Receptor In Complex With A
Selective And Potent Tetrahydroisochiolin Ligand.
pdb|1XQC|A Chain A, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|B Chain B, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|C Chain C, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|D Chain D, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
Length = 254
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 53 RELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 112
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 113 RNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 172
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ ++
Sbjct: 173 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKSK 232
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 233 NVVPLYDLLLEM 244
>pdb|1NUO|A Chain A, Two Rth Mutants With Impaired Hormone Binding
Length = 261
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 64/158 (40%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ LH A P +L +N E A R
Sbjct: 83 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLHAAVRYDPESETLTLNGEMAVTRGQLK 142
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 143 NGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLA 202
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
Y+ R + +LL+ + LR + R
Sbjct: 203 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 240
>pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|2AYR|A Chain A, A Serm Designed For The Treatment Of Uterine Leiomyoma
With Unique Tissue Specificity For Uterus And Ovaries In
Rats
pdb|2Q70|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2Q70|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2POG|A Chain A, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2POG|B Chain B, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2QE4|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2QE4|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2R6W|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6W|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6Y|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
pdb|2R6Y|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
Length = 248
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 49 RELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 108
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 109 RNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 168
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ ++
Sbjct: 169 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKSK 228
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 229 NVVPLYDLLLEM 240
>pdb|2YAT|A Chain A, Crystal Structure Of Estradiol Derived Metal Chelate And
Estrogen Receptor-Ligand Binding Domain Complex
Length = 252
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 53 RELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 112
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 113 RNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 172
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ ++
Sbjct: 173 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKSK 232
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 233 NVVPLYDLLLEM 244
>pdb|1PCG|A Chain A, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|1PCG|B Chain B, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|2I0J|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|C Chain C, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|D Chain D, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
Length = 244
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 49 RELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 108
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 109 RNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 168
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ ++
Sbjct: 169 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKSK 228
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 229 NVVPLYDLLLEM 240
>pdb|2OCF|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 298
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 55 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 114
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 115 RNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 174
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 175 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 234
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 235 NVVPLSDLLLEM 246
>pdb|3DZU|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 419
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 6/191 (3%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + + + + + F L DQ+ LL+ E+ LA S+ +LI+
Sbjct: 227 CQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLA--SLMNKDGVLIS 284
Query: 151 CEKA---RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
+ RE L + ++ E +F L D S+ AVI+ + + PGL++
Sbjct: 285 EGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLN 344
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKETIGD 266
+P+E +QD L ++ + F +LL + LR + ++ L K+T D
Sbjct: 345 VKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQVIKKTETD 404
Query: 267 IPIQRLLGDMY 277
+ + LL ++Y
Sbjct: 405 MSLHPLLQEIY 415
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 336 SGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLL 395
Query: 342 -FFKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 396 QVIKKTETDMSLHPLLQEIY 415
>pdb|3JZC|A Chain A, Crystal Structure Of Tr-Beta Bound To The Selective
Thyromimetic Triac
Length = 263
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L +N E A R
Sbjct: 85 VVDFAKKLPMFXELPXEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLK 144
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 145 NGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLAXVERIEKYQDSFLLA 204
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
Y+ R + +LL+ + LR + R
Sbjct: 205 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGAXHASRF 241
>pdb|1ZKY|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|1ZKY|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B23|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2B23|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G44|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G44|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G5O|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G5O|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
Length = 257
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 55 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 114
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 115 RNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 174
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 175 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKXK 234
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 235 NVVPLSDLLLEM 246
>pdb|1XAP|A Chain A, Structure Of The Ligand Binding Domain Of The Retinoic
Acid Receptor Beta
pdb|4DM6|A Chain A, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
pdb|4DM6|B Chain B, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
pdb|4DM8|A Chain A, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
pdb|4DM8|B Chain B, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
Length = 267
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 70/171 (40%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
+K E + + V + + L F L+ DQ+ LL+ + ++ +L + P ++
Sbjct: 72 DKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMT 131
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+ R + L+ + L D +E G + A+ L + L +
Sbjct: 132 FSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEP 191
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
V+ LQ+ L Y+R R +P F ++L+ + LR++ ER+
Sbjct: 192 TKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVI 242
>pdb|3UU7|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
Length = 251
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 51 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 110
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 111 RNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 170
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 171 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKXK 230
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 231 NVVPLSDLLLEM 242
>pdb|3Q97|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 58 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 117
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 118 RNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 177
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 178 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKXK 237
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 238 NVVPLSDLLLEM 249
>pdb|3UU7|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
pdb|3UUD|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 51 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 110
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 111 RNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 170
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 171 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 230
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 231 NVVPLSDLLLEM 242
>pdb|3Q95|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
pdb|3Q97|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 58 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 117
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 118 RNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 177
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 178 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 237
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 238 NVVPLSDLLLEM 249
>pdb|2HBH|A Chain A, Crystal Structure Of Vitamin D Nuclear Receptor Ligand
Binding Domain Bound To A Locked Side-Chain Analog Of
Calcitriol And Src-1 Peptide
pdb|2HC4|A Chain A, Crystal Structure Of The Lbd Of Vdr Of Danio Rerio In
Complex With Calcitriol
pdb|2HCD|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Vitamin D Nuclear Receptor In Complex With Gemini And A
Coactivator Peptide
pdb|3DR1|A Chain A, Side-Chain Fluorine Atoms Of Non-Steroidal Vitamin D3
Analogs Stabilize Helix 12 Of Vitamin D Receptor
pdb|3O1D|A Chain A, Structure-Function Study Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097.
pdb|3O1E|A Chain A, Structure-Function Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097
Length = 302
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ+ LL+ S E+ +L Q D+S +C + +
Sbjct: 118 VIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQSFSLEDMSW--SCGGPDFKYCIN 175
Query: 162 DVRVNNEIKLIQEILARF----RQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
DV + E L +F ++L E + A+ L +P+ PG+ D +E LQD+
Sbjct: 176 DVTKAGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDR 235
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQ 252
+L Y+R ++ + +++ L LR++ +
Sbjct: 236 LCDVLQAYIRIQHPGGRLLYAKMIQKLADLRSLNE 270
>pdb|4FHH|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4FHI|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4G1D|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Y|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Z|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G20|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G21|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G2H|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 300
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
+ + + + F+ L+ DQ+ LL+ S E+ +L Q D+S +C + +
Sbjct: 116 VIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQSFSLEDMSW--SCGGPDFKYCIN 173
Query: 162 DVRVNNEIKLIQEILARF----RQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
DV + E L +F ++L E + A+ L +P+ PG+ D +E LQD+
Sbjct: 174 DVTKAGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDR 233
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQ 252
+L Y+R ++ + +++ L LR++ +
Sbjct: 234 LCDVLQAYIRIQHPGGRLLYAKMIQKLADLRSLNE 268
>pdb|3HM1|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
pdb|3HM1|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
Length = 253
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 55 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 114
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 115 RNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 174
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 175 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKXK 234
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 235 NVVPLSDLLLEM 246
>pdb|1XDK|B Chain B, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|F Chain F, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 303
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 70/171 (40%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
+K E + + V + + L F L+ DQ+ LL+ + ++ +L + P ++
Sbjct: 74 DKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMT 133
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+ R + L+ + L D +E G + A+ L + L +
Sbjct: 134 FSDGLTLNRTQMHNAGFGPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEP 193
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
V+ LQ+ L Y+R R +P F ++L+ + LR++ ER+
Sbjct: 194 TKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVI 244
>pdb|3IMY|A Chain A, Structure Of Tr-Beta Bound To Selective Thyromimetic Gc-1
Length = 261
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L +N E A R
Sbjct: 83 VVDFAKKLPMFXELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLK 142
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 143 NGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLAXVERIEKYQDSFLLA 202
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
Y+ R + +LL+ + LR + R
Sbjct: 203 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGAXHASRF 239
>pdb|3GWS|X Chain X, Crystal Structure Of T3-Bound Thyroid Hormone Receptor
Length = 259
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L +N E A R
Sbjct: 82 VVDFAKKLPMFXELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLK 141
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 142 NGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLAXVERIEKYQDSFLLA 201
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
Y+ R + +LL+ + LR + R
Sbjct: 202 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGAXHASRF 238
>pdb|3UUA|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
pdb|3UUD|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 51 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 110
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 111 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 170
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 171 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKXK 230
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 231 NVVPLSDLLLEM 242
>pdb|2QZO|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 56 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 115
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 116 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 175
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 176 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKXK 235
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 236 NVVPLSDLLLEM 247
>pdb|3H52|A Chain A, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|B Chain B, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|C Chain C, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|D Chain D, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
Length = 254
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 96 ARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSL 147
R + AV+W + + F+ L DQ+ LLQ SW L L S + + L
Sbjct: 45 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDL 104
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------E 201
+IN + R LP + ++ K + + + +L E CMK ++L + +
Sbjct: 105 IIN--EQRMTLPD----MYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLK 158
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF-- 259
+ L DA + +++ + I+ G S+ RF +L +L S+ V ++ + F
Sbjct: 159 SQALFDAIRMTYIKELGKAIVKR--EGNSSQNSQRFYQLTKLLDSMHEVVENLLNYCFQT 216
Query: 260 FKETIGDIPIQRLLGDMYT 278
F + I +L ++ T
Sbjct: 217 FLDKTMSIEFPEMLAEIIT 235
>pdb|3UUA|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
Length = 251
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 51 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 110
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 111 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 170
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 171 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 230
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 231 NVVPLSDLLLEM 242
>pdb|2H79|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In
Orthorhombic Space Group
Length = 269
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 4/151 (2%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKA--RERLP 159
V + + L F L DQ++LL+ E+ L A P +L ++ E A RE+L
Sbjct: 88 VVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLK 147
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
+ V ++ I E+ + D +E ++AV+L + + GL+ +E Q+
Sbjct: 148 NGGLGVVSDA--IFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYL 205
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAV 250
YV R P + +LL+ + LR +
Sbjct: 206 LAFEHYVNHRKHNIPHFWPKLLMKVTDLRMI 236
>pdb|3JZB|A Chain A, Crystal Structure Of Tr-Alfa Bound To The Selective
Thyromimetic Triac
pdb|3ILZ|A Chain A, Structure Of Tr-Alfa Bound To Selective Thyromimetic Gc-1
In Space Group
Length = 267
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 4/151 (2%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKA--RERLP 159
V + + L F L DQ++LL+ E+ L A P +L ++ E A RE+L
Sbjct: 86 VVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLK 145
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
+ V ++ I E+ + D +E ++AV+L + + GL+ +E Q+
Sbjct: 146 NGGLGVVSDA--IFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYL 203
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAV 250
YV R P + +LL+ + LR +
Sbjct: 204 LAFEHYVNHRKHNIPHFWPKLLMKVTDLRMI 234
>pdb|3HZF|A Chain A, Structure Of Tr-alfa Bound To Selective Thyromimetic Gc-1
In C2 Space Group
Length = 269
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 4/151 (2%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKA--RERLP 159
V + + L F L DQ++LL+ E+ L A P +L ++ E A RE+L
Sbjct: 88 VVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLK 147
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
+ V ++ I E+ + D +E ++AV+L + + GL+ +E Q+
Sbjct: 148 NGGLGVVSDA--IFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYL 205
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAV 250
YV R P + +LL+ + LR +
Sbjct: 206 LAFEHYVNHRKHNIPHFWPKLLMKVTDLRMI 236
>pdb|2QA8|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
pdb|2QZO|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 56 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 115
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 116 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 175
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 176 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 235
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 236 NVVPLSDLLLEM 247
>pdb|3L0E|A Chain A, X-Ray Crystal Structure Of A Potent Liver X Receptor
Modulator
Length = 253
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW--SIPWDLSLLINCEKARERLPP 160
V + + + F L + DQ+ LL+ S E+ LL A+ ++ L + +++
Sbjct: 75 VDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETESITFLKDFTYSKD---- 130
Query: 161 DDVRVNNEIKLIQEILARFRQLSP---DGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
D R +++ I I R +S D +E + A+ +F+ + P + + VE LQ
Sbjct: 131 DFHRAGLQVEFINPIFEFSRAMSSLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQP 190
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
L Y R + + RF R+L+ L SLR + E++F
Sbjct: 191 YVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVF 232
>pdb|3Q95|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
Length = 260
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 58 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 117
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 118 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 177
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 178 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 237
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 238 NVVPLSDLLLEM 249
>pdb|1ERR|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
pdb|1ERR|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
Length = 253
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 52 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 111
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 112 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 171
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 172 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 231
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 232 NVVPLYDLLLEM 243
>pdb|1X7E|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7E|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7R|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Genistein
Length = 245
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ + LL +
Sbjct: 48 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPVKLLFAPNLLLD 107
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 108 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 167
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 168 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 227
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 228 NVVPLYDLLLEM 239
>pdb|3UUC|A Chain A, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|B Chain B, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|C Chain C, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|D Chain D, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
Length = 251
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 51 RELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 110
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 111 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 170
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 171 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 230
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 231 NVVPLYDLLLEM 242
>pdb|3OS8|A Chain A, Estrogen Receptor
pdb|3OS8|B Chain B, Estrogen Receptor
Length = 258
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L++ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 57 RELVHMINWAKRVPGFVDLTRHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 116
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVIL--------FTPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 117 RNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 176
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 177 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 236
Query: 265 GDIPIQRLLGDM 276
+P LL +M
Sbjct: 237 NVVPSYDLLLEM 248
>pdb|1PQ6|A Chain A, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|B Chain B, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|C Chain C, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|D Chain D, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ9|A Chain A, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|B Chain B, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|C Chain C, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|D Chain D, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQC|A Chain A, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|B Chain B, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|C Chain C, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|D Chain D, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|3KFC|A Chain A, Complex Structure Of Lxr With An Agonist
pdb|3KFC|B Chain B, Complex Structure Of Lxr With An Agonist
pdb|3KFC|C Chain C, Complex Structure Of Lxr With An Agonist
pdb|3KFC|D Chain D, Complex Structure Of Lxr With An Agonist
Length = 253
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQ-WSIPWD-LSLLINCEKARERLPP 160
V + + + F L + DQ+ LL+ S E+ LL A+ ++ + ++ L + +++
Sbjct: 75 VDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHR 134
Query: 161 DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
++V I I E R+L D +E + A+ +F+ + P + + VE LQ
Sbjct: 135 AGLQVEF-INPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVE 193
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
L Y R + + RF R+L+ L SLR + E++F
Sbjct: 194 ALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVF 232
>pdb|1L2I|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 59 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 118
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 119 RNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 178
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 179 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 238
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 239 NVVPLYDLLLEM 250
>pdb|1UPV|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta
Ligand Binding Domain In Complex With A Synthetic
Agonist
pdb|1UPW|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta
Ligand Binding Domain In Complex With A Synthetic
Agonist
Length = 257
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQ-WSIPWD-LSLLINCEKARERLPP 160
V + + + F L + DQ+ LL+ S E+ LL A+ ++ + ++ L + +++
Sbjct: 79 VDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHR 138
Query: 161 DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
++V I I E R+L D +E + A+ +F+ + P + + VE LQ
Sbjct: 139 AGLQVEF-INPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVE 197
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
L Y R + + RF R+L+ L SLR + E++F
Sbjct: 198 ALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVF 236
>pdb|2V0V|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|B Chain B, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|C Chain C, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|D Chain D, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 6/159 (3%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
V + + + F+ LS+ DQ+ LL+ E+ ++ A + ++ K + DD
Sbjct: 32 VEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLGSK---KYSVDD 88
Query: 163 VRVNNEIKLIQ---EILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
+ L+ E + L E AV+L + + G+ + VE LQ+
Sbjct: 89 LHSMGAGDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLI 148
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
L + + + + F +LLL LP LR++ E L
Sbjct: 149 RALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEEL 187
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + G+ + VE LQ+ L + + + + F +LLL LP LR++ E L
Sbjct: 128 SADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEEL 187
>pdb|1XZX|X Chain X, Thyroxine-Thyroid Hormone Receptor Interactions
pdb|1Y0X|X Chain X, Thyroxine-Thyroid Hormone Receptor Interactions
Length = 281
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L +N E A R
Sbjct: 103 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLK 162
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 163 NGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLA 222
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
Y+ R + +LL+ + LR + R
Sbjct: 223 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 260
>pdb|2V7C|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V7C|B Chain B, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 6/159 (3%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
V + + + F+ LS+ DQ+ LL+ E+ + A + ++ K + DD
Sbjct: 32 VEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFASLFDAKERTVTFLSGK---KYSVDD 88
Query: 163 VRVNNEIKLIQ---EILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
+ L+ E + L E AV+L + + G+ + VE LQ+
Sbjct: 89 LHSXGAGDLLNSXFEFSEKLNALQLSDEEXSLFTAVVLVSADRSGIENVNSVEALQETLI 148
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
L + + + + F +LLL LP LR++ E L
Sbjct: 149 RALRTLIXKNHPNEASIFTKLLLKLPDLRSLNNXHSEEL 187
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + G+ + VE LQ+ L + + + + F +LLL LP LR++ E L
Sbjct: 128 SADRSGIENVNSVEALQETLIRALRTLIXKNHPNEASIFTKLLLKLPDLRSLNNXHSEEL 187
>pdb|2H77|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In Monoclinic
Space Group
Length = 269
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 4/151 (2%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKA--RERLP 159
V + + L F L DQ++LL+ E+ L A P +L ++ E A RE+L
Sbjct: 88 VVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLK 147
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
+ V ++ I E+ + D +E ++AV+L + + GL+ +E Q+
Sbjct: 148 NGGLGVVSDA--IFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYL 205
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAV 250
YV R P + +LL+ + LR +
Sbjct: 206 LAFEHYVNHRKHNIPHFWPKLLMKVTDLRMI 236
>pdb|3CQV|A Chain A, Crystal Structure Of Reverb Beta In Complex With Heme
Length = 199
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 6/159 (3%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
V + + + F+ LS+ DQ+ LL+ E+ + A + ++ K + DD
Sbjct: 37 VEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFASLFDAKERTVTFLSGK---KYSVDD 93
Query: 163 VRVNNEIKLIQ---EILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
+ L+ E + L E AV+L + + G+ + VE LQ+
Sbjct: 94 LHSXGAGDLLNSXFEFSEKLNALQLSDEEXSLFTAVVLVSADRSGIENVNSVEALQETLI 153
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
L + + + + F +LLL LP LR++ E L
Sbjct: 154 RALRTLIXKNHPNEASIFTKLLLKLPDLRSLNNXHSEEL 192
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + G+ + VE LQ+ L + + + + F +LLL LP LR++ E L
Sbjct: 133 SADRSGIENVNSVEALQETLIRALRTLIXKNHPNEASIFTKLLLKLPDLRSLNNXHSEEL 192
>pdb|2QA8|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
Length = 258
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 56 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 115
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 116 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 175
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 176 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKXK 235
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 236 NVVPLSDLLLEM 247
>pdb|1P8D|A Chain A, X-Ray Crystal Structure Of Lxr Ligand Binding Domain With
24(S),25- Epoxycholesterol
pdb|1P8D|B Chain B, X-Ray Crystal Structure Of Lxr Ligand Binding Domain With
24(S),25- Epoxycholesterol
Length = 250
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQ-WSIPWD-LSLLINCEKARERLPP 160
V + + + F L + DQ+ LL+ S E+ LL A+ ++ + ++ L + +++
Sbjct: 72 VDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHR 131
Query: 161 DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
++V I I E R+L D +E + A+ +F+ + P + + VE LQ
Sbjct: 132 AGLQVEF-INPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVE 190
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
L Y R + + RF R+L+ L SLR + E++F
Sbjct: 191 ALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVF 229
>pdb|4DK8|A Chain A, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Partial Agonist 5
pdb|4DK8|C Chain C, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Partial Agonist 5
Length = 247
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQ-WSIPWD-LSLLINCEKARERLPP 160
V + + + F L + DQ+ LL+ S E+ LL A+ ++ + ++ L + +++
Sbjct: 69 VDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHR 128
Query: 161 DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
++V I I E R+L D +E + A+ +F+ + P + + VE LQ
Sbjct: 129 AGLQVEF-INPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVE 187
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
L Y R + + RF R+L+ L SLR + E++F
Sbjct: 188 ALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVF 226
>pdb|2P15|A Chain A, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2P15|B Chain B, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2Q6J|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2Q6J|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2QA6|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QA6|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QAB|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QAB|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QGT|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGT|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGW|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QGW|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QH6|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QH6|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QR9|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QR9|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QSE|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QSE|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QXM|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
pdb|2QXM|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
Length = 258
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 56 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 115
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 116 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 175
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 176 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 235
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 236 NVVPLSDLLLEM 247
>pdb|1NAX|A Chain A, Thyroid Receptor Beta1 In Complex With A Beta-Selective
Ligand
Length = 252
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L +N E A R
Sbjct: 75 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLK 134
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 135 NGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLA 194
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
Y+ R + +LL+ + LR + R
Sbjct: 195 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRF 231
>pdb|1Q4X|A Chain A, Crystal Structure Of Human Thyroid Hormone Receptor Beta
Lbd In Complex With Specific Agonist Gc-24
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L +N E A R
Sbjct: 75 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLK 134
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 135 NGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLA 194
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
Y+ R + +LL+ + LR + R
Sbjct: 195 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRF 231
>pdb|2IOG|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 11f
Length = 246
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 44 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 103
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 104 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 163
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 164 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 223
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 224 NVVPLYDLLLEM 235
>pdb|1N46|A Chain A, Crystal Structure Of Human Tr Beta Ligand-Binding Domain
Complexed With A Potent Subtype-Selective Thyromimetic
pdb|1N46|B Chain B, Crystal Structure Of Human Tr Beta Ligand-Binding Domain
Complexed With A Potent Subtype-Selective Thyromimetic
Length = 258
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L +N E A R
Sbjct: 80 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLK 139
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 140 NGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLA 199
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
Y+ R + +LL+ + LR + R
Sbjct: 200 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 237
>pdb|1SJ0|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With The Antagonist Ligand 4-d
pdb|1XP1|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 15
pdb|1XP6|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 16
pdb|1XP9|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 18
pdb|1XPC|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 19
pdb|1YIM|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 4
pdb|1YIN|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 3f
Length = 248
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 46 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 105
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 106 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 165
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 166 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 225
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 226 NVVPLYDLLLEM 237
>pdb|3OS8|C Chain C, Estrogen Receptor
pdb|3OS8|D Chain D, Estrogen Receptor
pdb|3OS9|A Chain A, Estrogen Receptor
pdb|3OS9|B Chain B, Estrogen Receptor
pdb|3OS9|C Chain C, Estrogen Receptor
pdb|3OS9|D Chain D, Estrogen Receptor
pdb|3OSA|A Chain A, Estrogen Receptor
pdb|3OSA|B Chain B, Estrogen Receptor
pdb|3OSA|C Chain C, Estrogen Receptor
pdb|3OSA|D Chain D, Estrogen Receptor
Length = 258
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L++ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 57 RELVHMINWAKRVPGFVDLTRHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 116
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVIL--------FTPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 117 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 176
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 177 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 236
Query: 265 GDIPIQRLLGDM 276
+P LL +M
Sbjct: 237 NVVPSYDLLLEM 248
>pdb|3L03|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
pdb|3L03|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 55 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 114
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 115 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 174
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 175 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKXK 234
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 235 NVVPLSDLLLEM 246
>pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|C Chain C, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|D Chain D, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|E Chain E, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|F Chain F, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|2OUZ|A Chain A, Crystal Structure Of Estrogen Receptor Alpha-Lasofoxifene
Complex
Length = 253
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 52 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 111
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 112 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 171
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 172 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 231
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 232 NVVPLYDLLLEM 243
>pdb|3HLV|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
pdb|3HLV|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
Length = 253
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 55 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 114
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 115 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 174
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 175 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 234
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 235 NVVPLSDLLLEM 246
>pdb|2IOK|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
pdb|2IOK|B Chain B, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
Length = 254
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 52 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 111
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 112 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 171
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 172 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 231
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 232 NVVPLYDLLLEM 243
>pdb|3ERD|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERD|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 4- Hydroxytamoxifen
pdb|1R5K|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|C Chain C, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
Length = 261
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 59 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 118
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 119 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 178
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 179 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 238
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 239 NVVPLYDLLLEM 250
>pdb|1BSX|A Chain A, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
pdb|1BSX|B Chain B, Structure And Specificity Of Nuclear Receptor-Coactivator
Interactions
Length = 260
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L +N E A R
Sbjct: 82 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLK 141
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 142 NGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLA 201
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
Y+ R + +LL+ + LR + R
Sbjct: 202 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 239
>pdb|1NQ1|A Chain A, Tr Receptor Mutations Conferring Hormone Resistance And
Reduced Corepressor Release Exhibit Decreased Stability
In The Nterminal Lbd
Length = 263
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
V + + L F L DQ++LL+ E+ L A P +L +N E A R +
Sbjct: 86 VDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKN 145
Query: 163 VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCIL 222
+ I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 146 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAF 205
Query: 223 GDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
Y+ R + +LL+ + LR + R
Sbjct: 206 EHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 242
>pdb|1NQ0|A Chain A, Tr Receptor Mutations Conferring Hormone Resistance And
Reduced Corepressor Release Exhibit Decreased Stability
In The Nterminal Lbd
Length = 263
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L +N E A R
Sbjct: 85 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLK 144
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 145 NGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLA 204
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
Y+ R + +LL+ + LR + R
Sbjct: 205 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 242
>pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|B Chain B, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|C Chain C, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 250
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 52 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 111
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 112 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 171
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 172 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 231
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 232 NVVPLYDLLLEM 243
>pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
pdb|1A52|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
Length = 258
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 56 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 115
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 116 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 175
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 176 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHERLAQLLLILSHIRHMSNKGMEHLYSMKCK 235
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 236 NVVPLYDLLLEM 247
>pdb|1R6G|A Chain A, Crystal Structure Of The Thyroid Hormone Receptor Beta
Ligand Binding Domain In Complex With A Beta Selective
Compound
Length = 259
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L +N E A R
Sbjct: 81 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLK 140
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 141 NGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLA 200
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
Y+ R + +LL+ + LR + R
Sbjct: 201 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 238
>pdb|3CTB|A Chain A, Tethered Pxr-LbdSRC-1p Apoprotein
pdb|3CTB|B Chain B, Tethered Pxr-LbdSRC-1p Apoprotein
pdb|3HVL|A Chain A, Tethered Pxr-LbdSRC-1p Complexed With Sr-12813
pdb|3HVL|B Chain B, Tethered Pxr-LbdSRC-1p Complexed With Sr-12813
Length = 344
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
++PP G +I + + + + + + ++ F+ L DQ+ LL+ + EL
Sbjct: 106 NYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFEL 165
Query: 132 ----FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILA---RFRQLSP 184
F + W+ L C +D + L++ +L ++L
Sbjct: 166 CQLRFNTVFNAETGTWECGRLSYC--------LEDTAGGFQQLLLEPMLKFHYMLKKLQL 217
Query: 185 DGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR--FGRLLL 242
E M+A+ LF+P+ PG++ + V+ LQ+Q L Y+ + R F +++
Sbjct: 218 HEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMA 277
Query: 243 MLPSLRAVRQSTIERL 258
ML LR++ +RL
Sbjct: 278 MLTELRSINAQHTQRL 293
>pdb|1NQ2|A Chain A, Two Rth Mutants With Impaired Hormone Binding
Length = 264
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
V + + L F L DQ++LL+ E+ L A P +L +N E A R +
Sbjct: 87 VDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRTAVRYEPESETLTLNGEMAVTRGQLKN 146
Query: 163 VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCIL 222
+ I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 147 GGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAF 206
Query: 223 GDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
Y+ R + +LL+ + LR + R
Sbjct: 207 EHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 243
>pdb|3DT3|A Chain A, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|3DT3|B Chain B, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|2YJA|B Chain B, Stapled Peptides Binding To Estrogen Receptor Alpha
Length = 255
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 56 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 115
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 116 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 175
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 176 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 235
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 236 NVVPLYDLLLEM 247
>pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|B Chain B, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|C Chain C, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
Length = 247
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 49 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 108
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 109 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 168
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 169 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 228
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 229 NVVPLYDLLLEM 240
>pdb|4DMA|A Chain A, Crystal Structure Of Era Lbd In Complex With Ru100132
pdb|4DMA|B Chain B, Crystal Structure Of Era Lbd In Complex With Ru100132
Length = 247
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 50 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 109
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 110 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 169
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 170 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKAK 229
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 230 NVVPLYDLLLEM 241
>pdb|3D57|A Chain A, Tr Variant D355r
pdb|3D57|B Chain B, Tr Variant D355r
Length = 266
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 62/158 (39%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L +N E A R
Sbjct: 89 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLK 148
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I + + D +E ++AV+L + + PGL + +E QD
Sbjct: 149 NGGLGVVSDAIFRLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLA 208
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
Y+ R + +LL+ + LR + R
Sbjct: 209 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFL 246
>pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
pdb|1GWQ|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
Length = 248
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 52 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 111
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 112 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 171
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 172 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 231
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 232 NVVPLYDLLLEM 243
>pdb|1ILG|A Chain A, Crystal Structure Of Apo Human Pregnane X Receptor Ligand
Binding Domain
pdb|1ILH|A Chain A, Crystal Structure Of Human Pregnane X Receptor Ligand
Binding Domain Bound To Sr12813
pdb|1M13|A Chain A, Crystal Structure Of The Human Pregane X Receptor Ligand
Binding Domain In Complex With Hyperforin, A Constituent
Of St. John's Wort
pdb|1NRL|A Chain A, Crystal Structure Of The Human Pxr-Lbd In Complex With An
Src-1 Coactivator Peptide And Sr12813
pdb|1NRL|B Chain B, Crystal Structure Of The Human Pxr-Lbd In Complex With An
Src-1 Coactivator Peptide And Sr12813
pdb|2QNV|A Chain A, Crystal Structure Of The Pregnane X Receptor Bound To
Colupulone
pdb|3R8D|A Chain A, Activation Of The Human Nuclear Xenobiotic Receptor Pxr By
The Reverse Transcriptase-Targeted Anti-Hiv Drug
Pnu-142721
Length = 316
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
++PP G +I + + + + + + ++ F+ L DQ+ LL+ + EL
Sbjct: 106 NYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFEL 165
Query: 132 ----FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILA---RFRQLSP 184
F + W+ L C +D + L++ +L ++L
Sbjct: 166 CQLRFNTVFNAETGTWECGRLSYC--------LEDTAGGFQQLLLEPMLKFHYMLKKLQL 217
Query: 185 DGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR--FGRLLL 242
E M+A+ LF+P+ PG++ + V+ LQ+Q L Y+ + R F +++
Sbjct: 218 HEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMA 277
Query: 243 MLPSLRAVRQSTIERL 258
ML LR++ +RL
Sbjct: 278 MLTELRSINAQHTQRL 293
>pdb|2O9I|A Chain A, Crystal Structure Of The Human Pregnane X Receptor Lbd In
Complex With An Src-1 Coactivator Peptide And T0901317
pdb|2O9I|B Chain B, Crystal Structure Of The Human Pregnane X Receptor Lbd In
Complex With An Src-1 Coactivator Peptide And T0901317
Length = 293
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
++PP G +I + + + + + + ++ F+ L DQ+ LL+ + EL
Sbjct: 83 NYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFEL 142
Query: 132 ----FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILA---RFRQLSP 184
F + W+ L C +D + L++ +L ++L
Sbjct: 143 SQLRFNTVFNAETGTWECGRLSYC--------LEDTAGGFQQLLLEPMLKFHYMLKKLQL 194
Query: 185 DGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR--FGRLLL 242
E M+A+ LF+P+ PG++ + V+ LQ+Q L Y+ + R F +++
Sbjct: 195 HEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMA 254
Query: 243 MLPSLRAVRQSTIERL 258
ML LR++ +RL
Sbjct: 255 MLTELRSINAQHTQRL 270
>pdb|1SKX|A Chain A, Structural Disorder In The Complex Of Human Pxr And The
Macrolide Antibiotic Rifampicin
Length = 313
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
++PP G +I + + + + + + ++ F+ L DQ+ LL+ + EL
Sbjct: 106 NYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFEL 165
Query: 132 ----FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILA---RFRQLSP 184
F + W+ L C +D + L++ +L ++L
Sbjct: 166 CQLRFNTVFNAETGTWECGRLSYC--------LEDTAGGFQQLLLEPMLKFHYMLKKLQL 217
Query: 185 DGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR--FGRLLL 242
E M+A+ LF+P+ PG++ + V+ LQ+Q L Y+ + R F +++
Sbjct: 218 HEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMA 277
Query: 243 MLPSLRAVRQSTIERL 258
ML LR++ +RL
Sbjct: 278 MLTELRSINAQHTQRL 293
>pdb|1NAV|A Chain A, Thyroid Receptor Alpha In Complex With An Agonist
Selective For Thyroid Receptor Beta1
Length = 263
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 4/160 (2%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKA--RERLP 159
V + + L F L DQ++LL+ E+ L A P +L ++ E A RE+L
Sbjct: 84 VVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLK 143
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
+ V ++ I E+ + D +E ++AV+L + + GL+ +E Q+
Sbjct: 144 NGGLGVVSDA--IFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYL 201
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
YV R P + +LL+ + LR + R
Sbjct: 202 LAFEHYVNHRKHNIPHFWPKLLMKVTDLRMIGACHASRFL 241
>pdb|2PIN|A Chain A, Thyroid Receptor Beta In Complex With Inhibitor
pdb|2PIN|B Chain B, Thyroid Receptor Beta In Complex With Inhibitor
Length = 253
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 62/157 (39%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L +N E A R
Sbjct: 75 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLK 134
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I + + D +E ++AV+L + + PGL + +E QD
Sbjct: 135 NGGLGVVSDAIFRLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLA 194
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
Y+ R + +LL+ + LR + R
Sbjct: 195 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRF 231
>pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
pdb|1GWR|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
Length = 245
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 81/192 (42%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 48 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 107
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILF--------TPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 108 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 167
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 168 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCK 227
Query: 265 GDIPIQRLLGDM 276
+P+ LL +M
Sbjct: 228 NVVPLYDLLLEM 239
>pdb|2QXS|A Chain A, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
pdb|2QXS|B Chain B, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
Length = 258
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 12/192 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 56 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 115
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVIL--------FTPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 116 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 175
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
+ + D+ L + +Q R +LLL+L +R + +E L+ +
Sbjct: 176 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKXK 235
Query: 265 GDIPIQRLLGDM 276
+P LL +M
Sbjct: 236 NVVPSYDLLLEM 247
>pdb|2ZNP|A Chain A, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp204
pdb|2ZNP|B Chain B, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp204
pdb|2ZNQ|A Chain A, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp401
pdb|2ZNQ|B Chain B, Human Pprr Delta Ligand Binding Domain In Complex With A
Synthetic Agonist Tipp401
Length = 276
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 83 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASI-VNKDGLLVA 141
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 142 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 201
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV---RQSTIERLFFKETI 264
VE +QD L +++ + F +LL + LR + ++R+ ET
Sbjct: 202 VPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETE 261
Query: 265 GDIP--IQRLLGDMY 277
+ +Q + DMY
Sbjct: 262 TSLHPLLQEIYKDMY 276
>pdb|2J4A|A Chain A, Human Thyroid Hormone Receptor Beta Ligand Binding Domain
In Complex With Kb131084
Length = 253
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 63/157 (40%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161
V + + L F L DQ++LL+ E+ L A P +L ++ E A R
Sbjct: 75 VVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVTRGQLK 134
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ + I ++ + D +E ++AV+L + + PGL + +E QD
Sbjct: 135 NGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLA 194
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
Y+ R + +LL+ + LR + R
Sbjct: 195 FEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRF 231
>pdb|3ET2|A Chain A, Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
pdb|3ET2|B Chain B, Structure Of Ppardelta With 3-[5-Methoxy-1-(4-Methoxy-
Benzenesulfonyl)-1h-Indol-3-Yl]-Propionic Acid
Length = 287
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 94 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASI-VNKDGLLVA 152
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 153 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 212
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV---RQSTIERLFFKETI 264
VE +QD L +++ + F +LL + LR + ++R+ ET
Sbjct: 213 VPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETE 272
Query: 265 GDIP--IQRLLGDMY 277
+ +Q + DMY
Sbjct: 273 TSLHPLLQEIYKDMY 287
>pdb|2J14|A Chain A, 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta
Agonists: Part2
pdb|2J14|B Chain B, 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta
Agonists: Part2
pdb|3OZ0|A Chain A, Ppar Delta In Complex With Azppard02
Length = 285
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 92 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASI-VNKDGLLVA 150
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 151 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 210
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV---RQSTIERLFFKETI 264
VE +QD L +++ + F +LL + LR + ++R+ ET
Sbjct: 211 VPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETE 270
Query: 265 GDIP--IQRLLGDMY 277
+ +Q + DMY
Sbjct: 271 TSLHPLLQEIYKDMY 285
>pdb|1Y0S|A Chain A, Crystal Structure Of Ppar Delta Complexed With Gw2331
pdb|1Y0S|B Chain B, Crystal Structure Of Ppar Delta Complexed With Gw2331
Length = 272
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 79 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASI-VNKDGLLVA 137
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 138 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 197
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV---RQSTIERLFFKETI 264
VE +QD L +++ + F +LL + LR + ++R+ ET
Sbjct: 198 VPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETE 257
Query: 265 GDIP--IQRLLGDMY 277
+ +Q + DMY
Sbjct: 258 TSLHPLLQEIYKDMY 272
>pdb|2XYJ|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYJ|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYW|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYW|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYX|A Chain A, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
pdb|2XYX|B Chain B, Novel Sulfonylthiadiazoles With An Unusual Binding Mode As
Partial Dual Peroxisome Proliferator-Activated Receptor
(Ppar) Gamma-Delta Agonists With High Potency And
In-Vivo Efficacy
Length = 288
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 95 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASI-VNKDGLLVA 153
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 154 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 213
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV---RQSTIERLFFKETI 264
VE +QD L +++ + F +LL + LR + ++R+ ET
Sbjct: 214 VPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETE 273
Query: 265 GDIP--IQRLLGDMY 277
+ +Q + DMY
Sbjct: 274 TSLHPLLQEIYKDMY 288
>pdb|2Q5G|A Chain A, Ligand Binding Domain Of Ppar Delta Receptor In Complex
With A Partial Agonist
pdb|2Q5G|B Chain B, Ligand Binding Domain Of Ppar Delta Receptor In Complex
With A Partial Agonist
Length = 283
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 90 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASI-VNKDGLLVA 148
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 149 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 208
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV---RQSTIERLFFKETI 264
VE +QD L +++ + F +LL + LR + ++R+ ET
Sbjct: 209 VPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETE 268
Query: 265 GDIP--IQRLLGDMY 277
+ +Q + DMY
Sbjct: 269 TSLHPLLQEIYKDMY 283
>pdb|3SP9|A Chain A, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
pdb|3SP9|B Chain B, Structural Basis For Iloprost As A Dual PparalphaDELTA
AGONIST
Length = 281
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 88 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASI-VNKDGLLVA 146
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 147 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 206
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV---RQSTIERLFFKETI 264
VE +QD L +++ + F +LL + LR + ++R+ ET
Sbjct: 207 VPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETE 266
Query: 265 GDIP--IQRLLGDMY 277
+ +Q + DMY
Sbjct: 267 TSLHPLLQEIYKDMY 281
>pdb|3TKM|A Chain A, Crystal Structure Ppar Delta Binding Gw0742
Length = 275
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 82 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASI-VNKDGLLVA 140
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 141 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 200
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV---RQSTIERLFFKETI 264
VE +QD L +++ + F +LL + LR + ++R+ ET
Sbjct: 201 VPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETE 260
Query: 265 GDIP--IQRLLGDMY 277
+ +Q + DMY
Sbjct: 261 TSLHPLLQEIYKDMY 275
>pdb|3GN8|A Chain A, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
pdb|3GN8|B Chain B, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
Length = 249
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 96 ARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSL 147
R + AV+W + L F+ L DQ+ LLQ SW L L S + + L
Sbjct: 40 GRQVVSAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYKQSNGNMLCFAPDL 99
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------E 201
+IN E R +LP + ++ + + +I + F +L E CMK ++L + +
Sbjct: 100 VINEE--RMQLP----YMYDQCQQMLKISSEFVRLQVSYDEYLCMKVLLLLSTVPKDGLK 153
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
+ + D + +++ + I+ G S+ RF +L +L S+ + ++ F+
Sbjct: 154 SQAVFDEIRMTYIKELGKAIVKR--EGNSSQNWQRFYQLTKLLDSMHEMVGGLLQFCFY 210
>pdb|2GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|2GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|2BAW|A Chain A, Human Nuclear Receptor-Ligand Complex 1
pdb|2BAW|B Chain B, Human Nuclear Receptor-Ligand Complex 1
pdb|3D5F|A Chain A, Crystal Structure Of Ppar-Delta Complex
pdb|3D5F|B Chain B, Crystal Structure Of Ppar-Delta Complex
Length = 267
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 74 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASI-VNKDGLLVA 132
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 133 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 192
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV---RQSTIERLFFKETI 264
VE +QD L +++ + F +LL + LR + ++R+ ET
Sbjct: 193 VPRVEAIQDTILRALEFHLQANHPDAQQLFPKLLQKMADLRQLVTEHAQMMQRIKKTETE 252
Query: 265 GDIP--IQRLLGDMY 277
+ +Q + DMY
Sbjct: 253 TSLHPLLQEIYKDMY 267
>pdb|4E2J|A Chain A, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
pdb|4E2J|B Chain B, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
Length = 250
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 96 ARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSL 147
R + AV+W + L F+ L DQ+ LLQ SW L L S + + L
Sbjct: 42 GRQVVSAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYKQSNGNMLCFAPDL 101
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------E 201
+IN E R +LP + ++ + + +I + F +L E CMK ++L + +
Sbjct: 102 VINEE--RMQLP----YMYDQCQQMLKISSEFVRLQVSYDEYLCMKVLLLLSTVPKDGLK 155
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
+ + D + +++ + I+ G S+ RF +L +L S+ + ++ F+
Sbjct: 156 SQAVFDEIRMTYIKELGKAIVKR--EGNSSQNWQRFYQLTKLLDSMHEMVGGLLQFCFY 212
>pdb|2AWH|A Chain A, Human Nuclear Receptor-Ligand Complex 1
pdb|2AWH|B Chain B, Human Nuclear Receptor-Ligand Complex 1
Length = 268
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 75 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASI-VNKDGLLVA 133
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 134 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 193
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV---RQSTIERLFFKETI 264
VE +QD L +++ + F +LL + LR + ++R+ ET
Sbjct: 194 VPRVEAIQDTILRALEFHLQANHPDAQQLFPKLLQKMADLRQLVTEHAQMMQRIKKTETE 253
Query: 265 GDIP--IQRLLGDMY 277
+ +Q + DMY
Sbjct: 254 TSLHPLLQEIYKDMY 268
>pdb|1GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|1GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-Activated Receptors
pdb|3GWX|A Chain A, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-activated Receptors
pdb|3GWX|B Chain B, Molecular Recognition Of Fatty Acids By Peroxisome
Proliferator-activated Receptors
pdb|3DY6|A Chain A, Ppardelta Complexed With An Anthranilic Acid Partial
Agonist
pdb|3DY6|B Chain B, Ppardelta Complexed With An Anthranilic Acid Partial
Agonist
pdb|3PEQ|A Chain A, Ppard Complexed With A Phenoxyacetic Acid Partial Agonist
pdb|3PEQ|B Chain B, Ppard Complexed With A Phenoxyacetic Acid Partial Agonist
Length = 271
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 8/195 (4%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 78 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASI-VNKDGLLVA 136
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 137 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 196
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAV---RQSTIERLFFKETI 264
VE +QD L +++ + F +LL + LR + ++R+ ET
Sbjct: 197 VPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLRQLVTEHAQMMQRIKKTETE 256
Query: 265 GDIP--IQRLLGDMY 277
+ +Q + DMY
Sbjct: 257 TSLHPLLQEIYKDMY 271
>pdb|1NHZ|A Chain A, Crystal Structure Of The Antagonist Form Of Glucocorticoid
Receptor
pdb|1P93|A Chain A, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|B Chain B, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|C Chain C, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|D Chain D, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
Length = 280
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 96 ARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSL 147
R + AV+W + + F+ L DQ+ LLQ SW L L S + + L
Sbjct: 71 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDL 130
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------E 201
+IN + R LP + ++ K + + + +L E CMK ++L + +
Sbjct: 131 IIN--EQRMTLPD----MYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLK 184
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF-- 259
+ L D + +++ + I+ G S+ RF +L +L S+ V ++ + F
Sbjct: 185 SQELFDEIRMTYIKELGKAIVKR--EGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQT 242
Query: 260 FKETIGDIPIQRLLGDMYT 278
F + I +L ++ T
Sbjct: 243 FLDKTMSIEFPEMLAEIIT 261
>pdb|2B50|A Chain A, Human Nuclear Receptor-Ligand Complex 2
pdb|2B50|B Chain B, Human Nuclear Receptor-Ligand Complex 2
Length = 272
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 3/161 (1%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 80 RCQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASI-VNKDGLLVA 138
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 139 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 198
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLR 248
VE +QD L +++ + F +LL + LR
Sbjct: 199 VPRVEAIQDTILRALEFHLQANHPDAQQLFPKLLQKMADLR 239
>pdb|2JFA|B Chain B, Estrogen Receptor Alpha Lbd In Complex With An Affinity-
Selected Corepressor Peptide
pdb|2BJ4|B Chain B, Estrogen Receptor Alpha Lbd In Complex With A
Phage-Display Derived Peptide Antagonist
Length = 252
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 12/175 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 71 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 130
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVIL--------FTPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 131 RNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 190
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
+ + D+ L + +Q R +LLL+L +R + +E L+
Sbjct: 191 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLY 245
>pdb|2LBD|A Chain A, Ligand-Binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To All-Trans Retinoic Acid
pdb|3LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To 9-cis Retinoic Acid
pdb|4LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To The Synthetic Agonist Bms961
Length = 267
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 68/169 (40%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
+K E + + V + + L F LS DQ+ LL+ + ++ +L + P ++
Sbjct: 72 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMT 131
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+ R + L+ + L D +E G + A+ L + L +
Sbjct: 132 FSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEP 191
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
+ V+ LQ+ L Y R R QP F R+L+ + LR + ER
Sbjct: 192 EKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAER 240
>pdb|4DK7|A Chain A, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Full Agonist 1
pdb|4DK7|C Chain C, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Full Agonist 1
Length = 247
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 3/159 (1%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQ-WSIPWD-LSLLINCEKARERLPP 160
V + + + F L + DQ+ LL+ S E+ LL A+ ++ + ++ L + +++
Sbjct: 69 VDFAKQVPGFLQLGREDQIALLKASTIEIXLLETARRYNHETECITFLKDFTYSKDDFHR 128
Query: 161 DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQC 220
++V I I E R+L D +E + A+ +F+ + P + + VE LQ
Sbjct: 129 AGLQVEF-INPIFEFSRAXRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVE 187
Query: 221 ILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
L Y R + + RF R L L SLR + E++F
Sbjct: 188 ALLSYTRIKRPQDQLRFPRXLXKLVSLRTLSSVHSEQVF 226
>pdb|1I37|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Dihydrotestosterone
pdb|2IHQ|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domian Complex With An N-Aryl-
Hydroxybicyclohydantoin
pdb|2NW4|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Bms-564929
pdb|3G0W|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With An N-Aryl-Oxazolidin 2-Imine
Inhibitor
Length = 260
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 32 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 85
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 86 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 136
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 137 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 181
>pdb|3RLJ|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-22
Length = 247
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 21 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 74
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 75 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 125
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 126 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 170
>pdb|1I38|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With
Dihydrotestosterone
pdb|1XNN|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With (3a-Alpha-,4-
Alpha
7-Alpha-,7a-Alpha-)-3a,4,7,7a-Tetrahydro-2-(4-Nitro-
1-Naphthalenyl)-4,7-Ethano-1h-Isoindole-1,3(2h)-Dione
Length = 260
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 32 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 85
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 86 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 136
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 137 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 181
>pdb|2Z4J|A Chain A, Crystal Structure Of Ar Lbd With Shp Peptide Nr Box 2
Length = 248
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 21 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 74
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 75 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 125
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 126 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 170
>pdb|3GZ9|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Delta (Ppard) In Complex With A Full Agonist
Length = 269
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 3/161 (1%)
Query: 90 KCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI 149
+CQ TT + + + + F +L DQ+ LL+ E LA + D L+
Sbjct: 78 RCQCTTVETVRELTEFAKSIPSFGSLFLNDQVTLLKYGVHEAIFAMLASL-VNKDGLLVA 136
Query: 150 NCEK--ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
N RE L ++ I+ E +F L D S+ A I+ + PGL++
Sbjct: 137 NGSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMN 196
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLR 248
VE +QD L +++ + F +LL + LR
Sbjct: 197 VPRVEAIQDTILRALEFHLQANHPDAQYLFPKLLQKMADLR 237
>pdb|1M2Z|A Chain A, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
pdb|1M2Z|D Chain D, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
Length = 257
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 96 ARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSL 147
R + AV+W + + F+ L DQ+ LLQ SW L L S + + L
Sbjct: 48 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDL 107
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------E 201
+IN + R LP + ++ K + + + +L E CMK ++L + +
Sbjct: 108 IIN--EQRMTLPC----MYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLK 161
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF-- 259
+ L D + +++ + I+ G S+ RF +L +L S+ V ++ + F
Sbjct: 162 SQELFDEIRMTYIKELGKAIVKR--EGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQT 219
Query: 260 FKETIGDIPIQRLLGDMYT 278
F + I +L ++ T
Sbjct: 220 FLDKTMSIEFPEMLAEIIT 238
>pdb|3RLL|A Chain A, Crystal Structure Of The T877a Androgen Receptor Ligand
Binding Domain In Complex With
(S)-N-(4-Cyano-3-(Trifluoromethyl)phenyl)-3-(4-
Cyanonaphthalen-1-Yloxy)-2-Hydroxy-2-Methylpropanamide
Length = 247
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 21 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 74
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 75 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 125
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 126 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 170
>pdb|2Q7K|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And An Ar 20-30
Peptide
pdb|2Q7L|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And A Tif2 Box3
Coactivator Peptide 740-753
Length = 257
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 29 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 82
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 83 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 133
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 134 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 178
>pdb|3L3X|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The First Motif Of Steroid Receptor
Coactivator 3
pdb|3L3Z|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The Third Motif Of Steroid Receptor
Coactivator 3
Length = 250
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 23 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 76
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 77 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 127
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 128 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 172
>pdb|1XJ7|A Chain A, Complex Androgen Receptor Lbd And Rac3 Peptide
pdb|2Q7I|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And An Ar 20-30 Peptide
pdb|2Q7J|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And A Tif2 Box 3 Coactivator
Peptide 740-753
Length = 257
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 29 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 82
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 83 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 133
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 134 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 178
>pdb|1T73|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxff Motif
pdb|1T74|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxlf Motif
pdb|1T76|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxvw Motif
pdb|1T79|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlw Motif
pdb|1T7F|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Lxxll Motif
pdb|1T7M|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxyf Motif
pdb|1T7R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlf Motif
pdb|1T7T|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With 5-Alpha Dihydrotestosterone
Length = 269
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 41 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 94
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 95 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 145
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 146 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 190
>pdb|2AX9|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With R-3
pdb|2AXA|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With S-1
pdb|2YLO|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLP|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLQ|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|3ZQT|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|4HLW|A Chain A, Targeting The Binding Function 3 (bf3) Site Of The Human
Androgen Receptor Through Virtual Screening. 2.
Development Of 2-((2- Phenoxyethyl)
Thio)-1h-benzoimidazole Derivatives
Length = 256
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 28 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 81
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 82 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 132
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 133 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 177
>pdb|1XOW|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With An Androgen Receptor Nh2-
Terminal Peptide, Ar20-30, And R1881
pdb|1XQ3|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With R1881
pdb|2AO6|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With Tif2(Iii) 740-753 Peptide And
R1881
pdb|3B5R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-31
pdb|3B65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-24
pdb|3B66|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-21
pdb|3B67|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-23
pdb|3B68|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-4
pdb|2YHD|A Chain A, Human Androgen Receptor In Complex With Af2 Small Molecule
Inhibitor
pdb|3V4A|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 2
Length = 249
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 21 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 74
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 75 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 125
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 126 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 170
>pdb|2AX6|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With Hydroxyflutamide
pdb|2AX7|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With S-1
Length = 256
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 28 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 81
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 82 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 132
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 133 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 177
>pdb|2OZ7|A Chain A, Crystal Structure Of The Human Androgen Receptor T877a
Mutant Ligand- Binding Domain With Cyproterone Acetate
Length = 249
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 21 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 74
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 75 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 125
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 126 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 170
>pdb|1E3G|A Chain A, Human Androgen Receptor Ligand Binding In Complex With The
Ligand Metribolone (R1881)
Length = 263
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 35 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 88
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 89 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 139
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 140 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 184
>pdb|3BQD|A Chain A, Doubling The Size Of The Glucocorticoid Receptor Ligand
Binding Pocket By Deacylcortivazol
Length = 255
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 96 ARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSL 147
R + AV+W + + F+ L DQ+ LLQ SW L L S + + L
Sbjct: 46 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDL 105
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------E 201
+IN + R LP + ++ K + + + +L E CMK ++L + +
Sbjct: 106 IIN--EQRMTLPC----MYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLK 159
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF-- 259
+ L D + +++ + I+ G S+ RF +L +L S+ V ++ + F
Sbjct: 160 SQELFDEIRMTYIKELGKAIVKR--EGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQT 217
Query: 260 FKETIGDIPIQRLLGDMYT 278
F + I +L ++ T
Sbjct: 218 FLDKTMSIEFPEMLAEIIT 236
>pdb|3CLD|A Chain A, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3CLD|B Chain B, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3K23|A Chain A, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|B Chain B, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|C Chain C, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K22|A Chain A, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
pdb|3K22|B Chain B, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
Length = 259
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 96 ARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSL 147
R + AV+W + + F+ L DQ+ LLQ SW L L S + + L
Sbjct: 50 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMYLMAFALGWRSYRQSSANLLCFAPDL 109
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------E 201
+IN + R LP + ++ K + + + +L E CMK ++L + +
Sbjct: 110 IIN--EQRMTLPG----MYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLK 163
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF-- 259
+ L D + +++ + I+ G S+ RF +L +L S+ V ++ + F
Sbjct: 164 SQELFDEIRMTYIKELGKAIVKR--EGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQT 221
Query: 260 FKETIGDIPIQRLLGDMYT 278
F + I +L ++ T
Sbjct: 222 FLDKTMSIEFPEMLAEIIT 240
>pdb|3E7C|A Chain A, Glucocorticoid Receptor Lbd Bound To Gsk866
pdb|3E7C|B Chain B, Glucocorticoid Receptor Lbd Bound To Gsk866
Length = 257
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 96 ARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSL 147
R + AV+W + + F+ L DQ+ LLQ SW L L S + + L
Sbjct: 48 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMYLMAFALGWRSYRQSSANLLCFAPDL 107
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------E 201
+IN + R LP + ++ K + + + +L E CMK ++L + +
Sbjct: 108 IIN--EQRMTLPG----MYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLK 161
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF-- 259
+ L D + +++ + I+ G S+ RF +L +L S+ V ++ + F
Sbjct: 162 SQELFDEIRMTYIKELGKAIVKR--EGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQT 219
Query: 260 FKETIGDIPIQRLLGDMYT 278
F + I +L ++ T
Sbjct: 220 FLDKTMSIEFPEMLAEIIT 238
>pdb|2AM9|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Testosterone
pdb|2AMA|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Dihydrotestosterone
pdb|2AMB|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Tetrahydrogestrinone
pdb|2PNU|A Chain A, Crystal Structure Of Human Androgen Receptor
Ligand-Binding Domain In Complex With Em-5744
pdb|3V49|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 1
Length = 266
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 38 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 91
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 92 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 142
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 143 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 187
>pdb|1EXA|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Active
R-Enantiomer Bms270394.
pdb|1EXX|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Inactive
S-Enantiomer Bms270395
Length = 246
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 68/169 (40%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
+K E + + V + + L F LS DQ+ LL+ + ++ +L + P ++
Sbjct: 51 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMT 110
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+ R + L+ + L D +E G + A+ L + L +
Sbjct: 111 FSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEP 170
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
+ V+ LQ+ L Y R R QP F R+L+ + LR + ER
Sbjct: 171 EKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAER 219
>pdb|2BJ4|A Chain A, Estrogen Receptor Alpha Lbd In Complex With A
Phage-Display Derived Peptide Antagonist
pdb|2JF9|A Chain A, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JF9|B Chain B, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JF9|C Chain C, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JFA|A Chain A, Estrogen Receptor Alpha Lbd In Complex With An Affinity-
Selected Corepressor Peptide
Length = 252
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 12/175 (6%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARE 156
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL +
Sbjct: 71 RELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPNLLLD 130
Query: 157 RLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVIL--------FTPETPGLVD 207
R V EI ++ +RFR ++ G E C+K++IL + L +
Sbjct: 131 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 190
Query: 208 AQPVEMLQDQAQCILGDYVRG---RYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 259
+ + D+ L + +Q R +LLL+L +R + +E L+
Sbjct: 191 KDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLY 245
>pdb|2HVC|A Chain A, The Crystal Structure Of Ligand-Binding Domain (Lbd) Of
Human Androgen Receptor In Complex With A Selective
Modulator Lgd2226
Length = 250
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 23 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 76
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 77 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 127
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 128 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 172
>pdb|3MNO|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, F608s)
Mutations At 1.55a
Length = 261
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 96 ARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSL 147
R + AV+W + + F+ L DQ+ LLQ SW L + L S + + L
Sbjct: 52 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMVFALGWRSYRQASGNLLCFAPDL 111
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------E 201
+IN + R LP + ++ K + I ++L E CMK ++L + +
Sbjct: 112 IIN--EQRMTLPC----MYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLK 165
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF-- 259
+ L D + +++ + I+ G S+ RF +L +L S+ V ++ + F
Sbjct: 166 SQELFDEIRMTYIKELGKAIVKR--EGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQT 223
Query: 260 FKETIGDIPIQRLLGDMYT 278
F + I +L ++ T
Sbjct: 224 FLDKSMSIEFPEMLAEIIT 242
>pdb|1FCY|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The RarbetaGAMMA-
Selective Retinoid Cd564
Length = 236
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 68/169 (40%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
+K E + + V + + L F LS DQ+ LL+ + ++ +L + P ++
Sbjct: 47 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMT 106
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+ R + L+ + L D +E G + A+ L + L +
Sbjct: 107 FSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEP 166
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
+ V+ LQ+ L Y R R QP F R+L+ + LR + ER
Sbjct: 167 EKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAER 215
>pdb|1T5Z|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain (Lbd) With Dht And A Peptide Derived From Its
Physiological Coactivator Ara70
pdb|1T63|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived From Its
Physiological Coactivator Grip1 Nr Box3
pdb|1T65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived Form Its
Physiological Coactivator Grip1 Nr Box 2 Bound In A Non-
Helical Conformation
pdb|2PIO|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIP|L Chain L, Androgen Receptor Lbd With Small Molecule
pdb|2PIQ|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIR|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIT|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIU|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIV|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIW|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIX|A Chain A, Ar Lbd With Small Molecule
pdb|2PKL|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2QPY|A Chain A, Ar Lbd With Small Molecule
Length = 251
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q SW L
Sbjct: 23 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGL 76
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
+ + S N PD V NE ++ + + R R LS +
Sbjct: 77 MVFAMGWRS-------FTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 127
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 128 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 172
>pdb|1FCX|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Bms184394
pdb|1FCZ|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Panagonist Retinoid
Bms181156
pdb|1FD0|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Sr11254
Length = 235
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 68/169 (40%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
+K E + + V + + L F LS DQ+ LL+ + ++ +L + P ++
Sbjct: 46 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMT 105
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+ R + L+ + L D +E G + A+ L + L +
Sbjct: 106 FSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEP 165
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIER 257
+ V+ LQ+ L Y R R QP F R+L+ + LR + ER
Sbjct: 166 EKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAER 214
>pdb|3GD2|A Chain A, Isoxazole Ligand Bound To Farnesoid X Receptor (Fxr)
Length = 229
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLI-----NCEKA 154
V + + L FQTL DQ+ LL+ S E L A+ +P S L+ N +
Sbjct: 56 VEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGIS 115
Query: 155 RERLPP--DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
E + P + E+K+ QE E + A+++ +P+ + D + VE
Sbjct: 116 DEYITPMFSFYKSIGELKMTQE-------------EYALLTAIVILSPDRQYIKDREAVE 162
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
LQ+ +L + P F LL L LR E L
Sbjct: 163 KLQEPLLDVLQKLCKIHQPENPQHFAELLGRLTELRTFNHHHAEML 208
>pdb|3HC6|A Chain A, Fxr With Src1 And Gsk088
Length = 232
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLI-----NCEKA 154
V + + L FQTL DQ+ LL+ S E L A+ +P S L+ N +
Sbjct: 59 VEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGIS 118
Query: 155 RERLPP--DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
E + P + E+K+ QE E + A+++ +P+ + D + VE
Sbjct: 119 DEYITPMFSFYKSIGELKMTQE-------------EYALLTAIVILSPDRQYIKDREAVE 165
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
LQ+ +L + P F LL L LR E L
Sbjct: 166 KLQEPLLDVLQKLCKIHQPENPQHFAELLGRLTELRTFNHHHAEML 211
>pdb|3P88|A Chain A, Fxr Bound To Isoquinolinecarboxylic Acid
Length = 229
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLI-----NCEKA 154
V + + L FQTL DQ+ LL+ S E L A+ +P S L+ N +
Sbjct: 56 VEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGIS 115
Query: 155 RERLPP--DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
E + P + E+K+ QE E + A+++ +P+ + D + VE
Sbjct: 116 DEYITPMFSFYKSIGELKMTQE-------------EYALLTAIVILSPDRQYIKDREAVE 162
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
LQ+ +L + P F LL L LR E L
Sbjct: 163 KLQEPLLDVLQKLCKIHQPENPQHFAELLGRLTELRTFNHHHAEML 208
>pdb|1GS4|A Chain A, Structural Basis For The Glucocorticoid Response In A
Mutant Human Androgen Receptor (Arccr) Derived From An
Androgen-Independent Prostate Cancer
Length = 248
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 31/156 (19%)
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC 151
E R L V+W + L F+ L DQ+ ++Q SW L + + S N
Sbjct: 36 NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRS-------FTNV 88
Query: 152 EKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS-------ECGCMKAVILFTP 200
PD V NE ++ + + R R LS + E CMKA++LF+
Sbjct: 89 NSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFS- 145
Query: 201 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
PV+ L++Q D +R Y ++ R
Sbjct: 146 -------IIPVDGLKNQK---FFDELRMNYIKELDR 171
>pdb|3P89|A Chain A, Fxr Bound To A Quinolinecarboxylic Acid
Length = 229
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 23/166 (13%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLI-----NCEKA 154
V + + L FQTL DQ+ LL+ S E L A+ +P S L+ N +
Sbjct: 56 VEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGIS 115
Query: 155 RERLPP--DDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
E + P + E+K+ QE E + A+++ +P+ + D + VE
Sbjct: 116 DEYITPMFSFYKSIGELKMTQE-------------EYALLTAIVILSPDRQYIKDREAVE 162
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
LQ+ +L + P F LL L LR E L
Sbjct: 163 KLQEPLLDVLQKLCKIHQPENPQHFAELLGRLTELRTFNHHHAEML 208
>pdb|3MNE|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By F608s Mutation At
1.96a
Length = 261
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 96 ARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSL 147
R + AV+W + + F+ L DQ+ LLQ SW L L S + + L
Sbjct: 52 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQASGNLLCFAPDL 111
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------E 201
+IN + R LP + ++ K + I ++L E CMK ++L + +
Sbjct: 112 IIN--EQRMTLPC----MYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLK 165
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF-- 259
+ L D + +++ + I+ G S+ RF +L +L S+ V ++ + F
Sbjct: 166 SQELFDEIRMTYIKELGKAIVKR--EGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQT 223
Query: 260 FKETIGDIPIQRLLGDMYT 278
F + I +L ++ T
Sbjct: 224 FLDKSMSIEFPEMLAEIIT 242
>pdb|3RY9|A Chain A, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
pdb|3RY9|B Chain B, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
Length = 250
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 22/179 (12%)
Query: 96 ARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSL 147
R + AV+W + L F+ L DQ+ LLQ SW L L S + + L
Sbjct: 40 GRQMISAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYQHTNGNMLYFAPDL 99
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------E 201
+ N E+ ++ + + ++I L F +L E CMK ++L + +
Sbjct: 100 IFNEERMQQSSMYELCKGMHKISL------EFVRLQVSYEEYLCMKVLLLLSTVPKDGLK 153
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
+ D + +++ + I+ G S+ RF +L +L S+ + ++ F+
Sbjct: 154 SQAAFDEIRMSYIKELGKAIVKR--EGNSSQNWQRFYQLTKLLDSMHDLVGGLLQFCFY 210
>pdb|3FXV|A Chain A, Identification Of An N-Oxide Pyridine Gw4064 Analogue As A
Potent Fxr Agonist
pdb|3OKH|A Chain A, Crystal Structure Of Human Fxr In Complex With
2-(4-Chlorophenyl)-1-
[(1s)-1-Cyclohexyl-2-(Cyclohexylamino)-2-Oxoethyl]-1h-
Benzimidazole- 6-Carboxylic Acid
pdb|3OKI|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OKI|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-1h-Benzimidazol-1-Yl]-N,
2-Dicyclohexylethanamide
pdb|3OLF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OLF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Methylbenzoic Acid
pdb|3OMK|A Chain A, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMK|C Chain C, Crystal Structure Of Human Fxr In Complex With
(2s)-2-[2-(4-
Chlorophenyl)-5,
6-Difluoro-1h-Benzimidazol-1-Yl]-2-Cyclohexyl-N-(2-
Methylphenyl)ethanamide
pdb|3OMM|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OMM|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3-Fluorobenzoic Acid
pdb|3OOF|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOF|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)benzoic Acid
pdb|3OOK|A Chain A, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
pdb|3OOK|C Chain C, Crystal Structure Of Human Fxr In Complex With
4-({(2s)-2-[2-(4-
Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2-
Cyclohexylacetyl}amino)-3,5-Difluorobenzoic Acid
Length = 233
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 73/193 (37%), Gaps = 30/193 (15%)
Query: 83 QILMSAEKCQETTARLLFMAVRWVRCLAPF-------QTLSKRDQLLLLQESWKELFLLH 135
+IL A +E L MA V+ L F QTL DQ+ LL+ S E L
Sbjct: 33 KILKEAFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLR 92
Query: 136 LAQW---SIPWDLSLLI-----NCEKARERLPP--DDVRVNNEIKLIQEILARFRQLSPD 185
A+ +P S L+ N + E + P + E+K+ QE
Sbjct: 93 SAEIFNKKLPSGHSDLLEARIRNSGISDEYITPMFSFYKSIGELKMTQE----------- 141
Query: 186 GSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLP 245
E + A+++ +P+ + D + VE LQ+ +L + P F LL L
Sbjct: 142 --EYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLT 199
Query: 246 SLRAVRQSTIERL 258
LR E L
Sbjct: 200 ELRTFNHHHAEML 212
>pdb|3L1B|A Chain A, Complex Structure Of Fxr Ligand-Binding Domain With A
Tetrahydroazepinoindole Compound
Length = 233
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLINCEKARERLP 159
V + + L FQTL DQ+ LL+ S E L A+ +P S L+ E+ R
Sbjct: 60 VEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLE-ERIRNSGI 118
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
D+ I + +L E + A+++ +P+ + D + VE LQ+
Sbjct: 119 SDEY-----ITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLL 173
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
+L + P F LL L LR E L
Sbjct: 174 DVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEML 212
>pdb|1OSH|A Chain A, A Chemical, Genetic, And Structural Analysis Of The
Nuclear Bile Acid Receptor Fxr
Length = 232
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLINCEKARERLP 159
V + + L FQTL DQ+ LL+ S E L A+ +P S L+ E+ R
Sbjct: 59 VEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLE-ERIRNSGI 117
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
D+ I + +L E + A+++ +P+ + D + VE LQ+
Sbjct: 118 SDEY-----ITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLL 172
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
+L + P F LL L LR E L
Sbjct: 173 DVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEML 211
>pdb|3HC5|A Chain A, Fxr With Src1 And Gsk826
pdb|3RVF|A Chain A, Fxr With Src1 And Gsk2034
Length = 232
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLINCEKARERLP 159
V + + L FQTL DQ+ LL+ S E L A+ +P S L+ E+ R
Sbjct: 59 VEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLE-ERIRNSGI 117
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
D+ I + +L E + A+++ +P+ + D + VE LQ+
Sbjct: 118 SDEY-----ITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLL 172
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
+L + P F LL L LR E L
Sbjct: 173 DVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEML 211
>pdb|3FLI|A Chain A, Discovery Of Xl335, A Highly Potent, Selective And Orally-
Active Agonist Of The Farnesoid X Receptor (Fxr)
Length = 231
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLINCEKARERLP 159
V + + L FQTL DQ+ LL+ S E L A+ +P S L+ E+ R
Sbjct: 58 VEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLE-ERIRNSGI 116
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
D+ I + +L E + A+++ +P+ + D + VE LQ+
Sbjct: 117 SDEY-----ITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLL 171
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
+L + P F LL L LR E L
Sbjct: 172 DVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEML 210
>pdb|3RUT|A Chain A, Fxr With Src1 And Gsk359
pdb|3RUU|A Chain A, Fxr With Src1 And Gsk237
Length = 229
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLINCEKARERLP 159
V + + L FQTL DQ+ LL+ S E L A+ +P S L+ E+ R
Sbjct: 56 VEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLE-ERIRNSGI 114
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
D+ I + +L E + A+++ +P+ + D + VE LQ+
Sbjct: 115 SDEY-----ITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLL 169
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
+L + P F LL L LR E L
Sbjct: 170 DVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEML 208
>pdb|1K4W|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Ror Beta
Ligand-Binding Domain In The Active Conformation
Length = 252
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 85/184 (46%), Gaps = 11/184 (5%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
++C + V + + + F L + DQ+LLL+ E+ L+ + + P + ++L
Sbjct: 60 QQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL 119
Query: 149 INCE----KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
+ + + L DD+ VN + + + QL+ + E + +L +P+
Sbjct: 120 FEGKYGGMQMFKALGSDDL-VNEAFDFAKNLCS--LQLTEE--EIALFSSAVLISPDRAW 174
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKET 263
L++ + V+ LQ++ L ++ + T +L+ +P++ AV E+L FK++
Sbjct: 175 LLEPRKVQKLQEKIYFALQHVIQKNHLDDET-LAKLIAKIPTITAVCNLHGEKLQVFKQS 233
Query: 264 IGDI 267
DI
Sbjct: 234 HPDI 237
>pdb|3DCT|A Chain A, Fxr With Src1 And Gw4064
pdb|3DCU|A Chain A, Fxr With Src1 And Gsk8062
Length = 235
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLINCEKARERLP 159
V + + L FQTL DQ+ LL+ S E L A+ +P S L+ E+ R
Sbjct: 62 VEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLE-ERIRNSGI 120
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
D+ I + +L E + A+++ +P+ + D + VE LQ+
Sbjct: 121 SDEY-----ITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLL 175
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
+L + P F LL L LR E L
Sbjct: 176 DVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEML 214
>pdb|3BEJ|A Chain A, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
pdb|3BEJ|B Chain B, Structure Of Human Fxr In Complex With Mfa-1 And Co-
Activator Peptide
Length = 238
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLINCEKARERLP 159
V + + L FQTL DQ+ LL+ S E L A+ +P S L+ E+ R
Sbjct: 65 VEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPSGHSDLLE-ERIRNSGI 123
Query: 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219
D+ I + +L E + A+++ +P+ + D + VE LQ+
Sbjct: 124 SDEY-----ITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLL 178
Query: 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
+L + P F LL L LR E L
Sbjct: 179 DVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEML 217
>pdb|3MNP|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, V708a,
E711g) Mutations At 1.50a
Length = 261
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 96 ARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSL 147
R + AV+W + + F+ L DQ+ LLQ SW L + L S + + L
Sbjct: 52 GRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDL 111
Query: 148 LINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP------E 201
+IN + R LP + ++ K + I ++L E CMK ++L + +
Sbjct: 112 IIN--EQRMTLPC----MYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLK 165
Query: 202 TPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF-- 259
+ L D + +++ + I G S+ RF +L +L S+ V ++ + F
Sbjct: 166 SQELFDEIRMTYIKELGKAIAKR--GGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQT 223
Query: 260 FKETIGDIPIQRLLGDMYT 278
F + I +L ++ T
Sbjct: 224 FLDKSMSIEFPEMLAEIIT 242
>pdb|1N4H|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 259
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 85/184 (46%), Gaps = 11/184 (5%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
++C + V + + + F L + DQ+LLL+ E+ L+ + + P + ++L
Sbjct: 60 QQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVL 119
Query: 149 INCE----KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
+ + + L DD+ VN + + + QL+ + E + +L +P+
Sbjct: 120 FEGKYGGMQMFKALGSDDL-VNEAFDFAKNLCS--LQLTEE--EIALFSSAVLISPDRAW 174
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKET 263
L++ + V+ LQ++ L ++ + T +L+ +P++ AV E+L FK++
Sbjct: 175 LLEPRKVQKLQEKIYFALQHVIQKNHLDDET-LAKLIAKIPTITAVCNLHGEKLQVFKQS 233
Query: 264 IGDI 267
DI
Sbjct: 234 HPDI 237
>pdb|1Z95|A Chain A, Crystal Structure Of The Androgen Receptor Ligand-Binding
Domain W741l Mutant Complex With R-Bicalutamide
Length = 246
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q S
Sbjct: 20 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYS---- 69
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
L+ L +++ W N PD V NE ++ + + R R LS +
Sbjct: 70 -LMGLMVFAMGW--RSFTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 124
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 125 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 169
>pdb|2AX8|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain W741l Mutant In Complex With S-1
Length = 256
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 37/176 (21%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+QP LL L E R L V+W + L F+ L DQ+ ++Q S
Sbjct: 28 NNQPDSFAALLSSL------NELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYS---- 77
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEIL----ARFRQLSPDGS 187
L+ L +++ W N PD V NE ++ + + R R LS +
Sbjct: 78 -LMGLMVFAMGW--RSFTNVNSRMLYFAPD--LVFNEYRMHKSRMYSQCVRMRHLSQEFG 132
Query: 188 -------ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
E CMKA++LF+ PV+ L++Q D +R Y ++ R
Sbjct: 133 WLQITPQEFLCMKALLLFS--------IIPVDGLKNQK---FFDELRMNYIKELDR 177
>pdb|3G8O|A Chain A, Progesterone Receptor With Bound Pyrrolidine 1
pdb|3G8O|B Chain B, Progesterone Receptor With Bound Pyrrolidine 1
Length = 263
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLL 148
R L V+W + L F+ L DQ+ L+Q SW L + H++ + + L+
Sbjct: 54 RQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLI 113
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+N ++ +E + + +I F +L E CMK ++ L++
Sbjct: 114 LNEQRMKES------SFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLL--------LLNT 159
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQ 233
P+E L+ Q Q + +R Y R+
Sbjct: 160 IPLEGLRSQTQF---EEMRSSYIRE 181
>pdb|1NQ7|A Chain A, Characterization Of Ligands For The Orphan Nuclear
Receptor Rorbeta
Length = 244
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE----KARER 157
V + + + F L + DQ+LLL+ E+ L+ + + P + ++L + + +
Sbjct: 66 VVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKA 125
Query: 158 LPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
L DD+ VN + + + L E + +L +P+ L++ + V+ LQ++
Sbjct: 126 LGSDDL-VNEAFDFAKNLCS----LQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEK 180
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL-FFKETIGDI 267
L ++ + T +L+ +P++ AV E+L FK++ DI
Sbjct: 181 IYFALQHVIQKNHLDDET-LAKLIAKIPTITAVCNLHGEKLQVFKQSHPDI 230
>pdb|1SQN|A Chain A, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
pdb|1SQN|B Chain B, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
Length = 261
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLL 148
R L V+W + L F+ L DQ+ L+Q SW L + H++ + + L+
Sbjct: 52 RQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLI 111
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+N ++ +E + + +I F +L E CMK ++ L++
Sbjct: 112 LNEQRMKES------SFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLL--------LLNT 157
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQ 233
P+E L+ Q Q + +R Y R+
Sbjct: 158 IPLEGLRSQTQF---EEMRSSYIRE 179
>pdb|1SR7|A Chain A, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1SR7|B Chain B, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1ZUC|B Chain B, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
pdb|1ZUC|A Chain A, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
Length = 259
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLL 148
R L V+W + L F+ L DQ+ L+Q SW L + H++ + + L+
Sbjct: 50 RQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLI 109
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+N ++ +E + + +I F +L E CMK ++ L++
Sbjct: 110 LNEQRMKES------SFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLL--------LLNT 155
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQ 233
P+E L+ Q Q + +R Y R+
Sbjct: 156 IPLEGLRSQTQF---EEMRSSYIRE 177
>pdb|2W8Y|A Chain A, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|2W8Y|B Chain B, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|3ZR7|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZR7|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|4A2J|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4A2J|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4APU|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
pdb|4APU|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
Length = 260
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLL 148
R L V+W + L F+ L DQ+ L+Q SW L + H++ + + L+
Sbjct: 51 RQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLI 110
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+N ++ +E + + +I F +L E CMK ++ L++
Sbjct: 111 LNEQRMKES------SFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLL--------LLNT 156
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQ 233
P+E L+ Q Q + +R Y R+
Sbjct: 157 IPLEGLRSQTQF---EEMRSSYIRE 178
>pdb|1E3K|A Chain A, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|1E3K|B Chain B, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|3D90|A Chain A, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
pdb|3D90|B Chain B, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
Length = 258
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLL 148
R L V+W + L F+ L DQ+ L+Q SW L + H++ + + L+
Sbjct: 49 RQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLI 108
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+N ++ +E + + +I F +L E CMK ++ L++
Sbjct: 109 LNEQRMKES------SFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLL--------LLNT 154
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQ 233
P+E L+ Q Q + +R Y R+
Sbjct: 155 IPLEGLRSQTQF---EEMRSSYIRE 176
>pdb|1A28|A Chain A, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|1A28|B Chain B, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|2OVH|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Smrt
pdb|2OVM|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Ncor
pdb|3HQ5|A Chain A, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand.
pdb|3HQ5|B Chain B, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand
Length = 256
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLL 148
R L V+W + L F+ L DQ+ L+Q SW L + H++ + + L+
Sbjct: 47 RQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLI 106
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+N ++ +E + + +I F +L E CMK ++ L++
Sbjct: 107 LNEQRMKES------SFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLL--------LLNT 152
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQ 233
P+E L+ Q Q + +R Y R+
Sbjct: 153 IPLEGLRSQTQF---EEMRSSYIRE 174
>pdb|3KBA|A Chain A, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
pdb|3KBA|B Chain B, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
Length = 253
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 25/145 (17%)
Query: 97 RLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLL--------HLAQWSIPWDLSLL 148
R L V+W + L F+ L DQ+ L+Q SW L + H++ + + L+
Sbjct: 44 RQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLI 103
Query: 149 INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDA 208
+N ++ +E + + +I F +L E CMK ++ L++
Sbjct: 104 LNEQRMKES------SFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLL--------LLNT 149
Query: 209 QPVEMLQDQAQCILGDYVRGRYSRQ 233
P+E L+ Q Q + +R Y R+
Sbjct: 150 IPLEGLRSQTQF---EEMRSSYIRE 171
>pdb|4FNE|A Chain A, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Doc Complex
pdb|4FN9|A Chain A, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Progesterone Complex
pdb|4FN9|B Chain B, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Progesterone Complex
Length = 254
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 31/149 (20%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
L V+W + L F+ L DQ+ L+Q SW + L +++ W N +
Sbjct: 47 LVSVVKWAKALPGFRNLHLDDQMTLIQYSW-----MGLMAFAMGWRSYKHTNGQML--YF 99
Query: 159 PPDDVRVNNEIKL-----------IQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
PD + NE ++ +Q+I F +L E CMKA++L +
Sbjct: 100 APD--LIFNEQRMQQSAMYDLCQGMQQISQEFVRLQVTQEEFLCMKALLLLSTV------ 151
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
P E L+ QA D +R Y ++ R
Sbjct: 152 --PKEGLKSQASF---DEMRMNYIKELNR 175
>pdb|2AA2|A Chain A, Mineralocorticoid Receptor With Bound Aldosterone
pdb|2AA5|A Chain A, Mineralocorticoid Receptor With Bound Progesterone
pdb|2AA5|B Chain B, Mineralocorticoid Receptor With Bound Progesterone
pdb|2AA7|A Chain A, Mineralocorticoid Receptor With Bound Deoxycorticosterone
Length = 275
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 87 SAEKCQETTARL----LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIP 142
+AE T RL + V+W + L F+ L DQ+ L+Q SW + L+ +++
Sbjct: 52 TAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSW-----MSLSSFALS 106
Query: 143 W 143
W
Sbjct: 107 W 107
>pdb|1OT7|A Chain A, Structural Basis For 3-Deoxy-Cdca Binding And Activation
Of Fxr
pdb|1OT7|B Chain B, Structural Basis For 3-Deoxy-Cdca Binding And Activation
Of Fxr
Length = 229
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 25/167 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLINCEKARERLP 159
V + + L FQTL DQ+ LL+ S E L A+ +P + L+ E+ R+
Sbjct: 57 VEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPAGHADLLE-ERIRKSGI 115
Query: 160 PDD--------VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
D+ + E+K+ QE E + A+++ +P+ + D + V
Sbjct: 116 SDEYITPMFSFYKSVGELKMTQE-------------EYALLTAIVILSPDRQYIKDREAV 162
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
E LQ+ +L + P F LL L LR E L
Sbjct: 163 EKLQEPLLDVLQKLCKIYQPENPQHFACLLGRLTELRTFNHHHAEML 209
>pdb|2A3I|A Chain A, Structural And Biochemical Mechanisms For The Specificity
Of Hormone Binding And Coactivator Assembly By
Mineralocorticoid Receptor
Length = 253
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 87 SAEKCQETTARL----LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIP 142
+AE T RL + V+W + L F+ L DQ+ L+Q SW + L+ +++
Sbjct: 30 TAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSW-----MSLSSFALS 84
Query: 143 W 143
W
Sbjct: 85 W 85
>pdb|3VHU|A Chain A, Mineralocorticoid Receptor Ligand-Binding Domain With
Spironolactone
Length = 294
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 87 SAEKCQETTARL----LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLA 137
+AE T RL + V+W + L F+ L DQ+ L+Q SW L L+
Sbjct: 71 TAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALS 125
>pdb|1OSV|A Chain A, Structural Basis For Bile Acid Binding And Activation Of
The Nuclear Receptor Fxr
pdb|1OSV|B Chain B, Structural Basis For Bile Acid Binding And Activation Of
The Nuclear Receptor Fxr
Length = 230
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 25/167 (14%)
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW---SIPWDLSLLINCEKARERLP 159
V + + L FQTL DQ+ LL+ S E L A+ +P + L+ E+ R+
Sbjct: 57 VEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPAGHADLLE-ERIRKSGI 115
Query: 160 PDD--------VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
D+ + E+K+ QE E + A+++ +P+ + D + V
Sbjct: 116 SDEYITPMFSFYKSVGELKMTQE-------------EYALLTAIVILSPDRQYIKDREAV 162
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
E LQ+ +L + P F LL L LR E L
Sbjct: 163 EKLQEPLLDVLQKLCKIYQPENPQHFACLLGRLTELRTFNHHHAEML 209
>pdb|2AA6|A Chain A, Mineralocorticoid Receptor S810l Mutant With Bound
Progesterone
pdb|2AA6|B Chain B, Mineralocorticoid Receptor S810l Mutant With Bound
Progesterone
pdb|2AAX|A Chain A, Mineralocorticoid Receptor Double Mutant With Bound
Cortisone
pdb|2AAX|B Chain B, Mineralocorticoid Receptor Double Mutant With Bound
Cortisone
pdb|2AB2|A Chain A, Mineralocorticoid Receptor Double Mutant With Bound
Spironolactone
pdb|2AB2|B Chain B, Mineralocorticoid Receptor Double Mutant With Bound
Spironolactone
Length = 275
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 87 SAEKCQETTARL----LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLA 137
+AE T RL + V+W + L F+ L DQ+ L+Q SW L L+
Sbjct: 52 TAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALS 106
>pdb|3VHV|A Chain A, Mineralocorticoid Receptor Ligand-Binding Domain With
Non-Steroidal Antagonist
Length = 260
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 87 SAEKCQETTARL----LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLA 137
+AE T RL + V+W + L F+ L DQ+ L+Q SW L L+
Sbjct: 37 TAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALS 91
>pdb|2ABI|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
pdb|2ABI|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
pdb|2ABI|C Chain C, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
Length = 256
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 87 SAEKCQETTARL----LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIP 142
+AE T RL + V+W + L F+ L DQ+ L+Q SW + L+ +++
Sbjct: 33 TAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSW-----MCLSSFALS 87
Query: 143 W 143
W
Sbjct: 88 W 88
>pdb|3LTX|A Chain A, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|B Chain B, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|C Chain C, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|D Chain D, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
Length = 243
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 74 QPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFL 133
QPP LL L+ + R L + W + + + LS DQ+ L++ W EL L
Sbjct: 30 QPPTKVHLLNSLV------KLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWMELLL 83
Query: 134 LHLAQWSI 141
L+ A SI
Sbjct: 84 LNCAFRSI 91
>pdb|2OAX|A Chain A, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|B Chain B, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|C Chain C, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|D Chain D, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|E Chain E, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|F Chain F, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
Length = 256
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 87 SAEKCQETTARL----LFMAVRWVRCLAPFQTLSKRDQLLLLQESW 128
+AE T RL + V+W + L F+ L DQ+ L+Q SW
Sbjct: 33 TAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSW 78
>pdb|1Y9R|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1Y9R|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|C Chain C, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
Length = 255
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 87 SAEKCQETTARL----LFMAVRWVRCLAPFQTLSKRDQLLLLQESW 128
+AE T RL + V+W + L F+ L DQ+ L+Q SW
Sbjct: 32 TAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSW 77
>pdb|2Q1H|A Chain A, Ancestral Corticoid Receptor In Complex With Aldosterone
pdb|2Q1V|A Chain A, Ancestral Corticoid Receptor In Complex With Cortisol
Length = 250
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWS--------IPWDLSLLINCEK 153
V+W + L F+ L DQ+ L+Q SW L L S + + L+ N E+
Sbjct: 46 VVKWAKALPGFRNLHLDDQMTLIQYSWMSLMAFSLGWRSYKHTNGQMLYFAPDLIFNEER 105
Query: 154 ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFT 199
++ D + +++I F +L E CMK ++L +
Sbjct: 106 MQQSAMYDLCQG------MRQISQEFVRLQVTYEEFLCMKVLLLLS 145
>pdb|2Q3Y|A Chain A, Ancestral Corticiod Receptor In Complex With Doc
Length = 249
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 102 AVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLA 137
V+W + L F+ L DQ+ L+Q SW L L
Sbjct: 46 VVKWAKALPGFRNLHLDDQMTLIQYSWMSLMAFSLG 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,932,759
Number of Sequences: 62578
Number of extensions: 424558
Number of successful extensions: 1450
Number of sequences better than 100.0: 304
Number of HSP's better than 100.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 559
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)