BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6602
(367 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q64104|NR2E1_MOUSE Nuclear receptor subfamily 2 group E member 1 OS=Mus musculus
GN=Nr2e1 PE=1 SV=1
Length = 385
Score = 181 bits (459), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +D+ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEDNGAAAHFP--STALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNTDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>sp|Q91379|NR2E1_CHICK Nuclear receptor subfamily 2 group E member 1 OS=Gallus gallus
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 167/307 (54%), Gaps = 44/307 (14%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNP---------HHSPDLLPPNGISSVKI 44
VQHERGPR I H ++S PH P + L P+G+ +
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEESSGAPHFPATALPAPAFFTAVSQLEPHGLELAAV 147
Query: 45 PPT-VLYPPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAV 103
T GL P P +P H+ P L + + C E+ ARLLFM++
Sbjct: 148 AGTPERQALVGLAQPTP---KYP------HEVNGTPMYLYEVATESVC-ESAARLLFMSI 197
Query: 104 RWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV 163
+W + + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 198 KWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNT 253
Query: 164 ------RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQP 210
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A
Sbjct: 254 DSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAA 313
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
+ LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI
Sbjct: 314 IAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPIT 373
Query: 271 RLLGDMY 277
RLL DMY
Sbjct: 374 RLLSDMY 380
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>sp|Q9Y466|NR2E1_HUMAN Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 166/305 (54%), Gaps = 40/305 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPS 53
VQHERGPR I H +++ H P S L P ++V P
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEENGAAAHFP--SAALPAPAFFTAV-----TQLEPH 140
Query: 54 GLKSPPPPSHHHPSMFLATHQPPPH--------PGLLQILMSAEKCQETTARLLFMAVRW 105
GL+ + ++ QP P P L + + C E+ ARLLFM+++W
Sbjct: 141 GLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVC-ESAARLLFMSIKW 199
Query: 106 VRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV-- 163
+ + F TLS +DQL+LL+++W+ELF+L +AQW+IP D + L+ A + D+
Sbjct: 200 AKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLL----AVSGMNGDNTDS 255
Query: 164 ----RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-------ETPGLVDAQPVE 212
++ +EI+ +QE++ARFRQL D +E C+K ++ F E +A +
Sbjct: 256 QKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIA 315
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI RL
Sbjct: 316 ALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRL 375
Query: 273 LGDMY 277
L DMY
Sbjct: 376 LSDMY 380
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 310 NAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGN 369
Query: 350 IPIQRLLGDMY 360
+PI RLL DMY
Sbjct: 370 VPITRLLSDMY 380
>sp|P70052|NR2E1_XENLA Nuclear receptor subfamily 2 group E member 1 OS=Xenopus laevis
GN=nr2e1 PE=2 SV=1
Length = 386
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 161/304 (52%), Gaps = 37/304 (12%)
Query: 1 VQHERGPRKPKIHNA----HHQDSKLEPHNPHHSPDLLP-PNGISSVK--------IPPT 47
VQHERGPR I ++ H S LP P ++V+ +
Sbjct: 88 VQHERGPRTSTIRKQVALYFRGHKEVNGSTQHFSSTALPTPTFFTTVRQLEAHNLELAAI 147
Query: 48 VLYPPS----GLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAV 103
P GL P P +P H+ P L + C E+ ARLLFM++
Sbjct: 148 STVPERQTLVGLAQPTP---KYP------HEVNGAPLYLYEFATESVC-ESAARLLFMSI 197
Query: 104 RWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE--KARERLPPD 161
+W + + F TLS +DQL+LL+++W+ELF+L +AQW+IP D S L+ P
Sbjct: 198 KWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDASTLLAVSGMNNENTESPK 257
Query: 162 DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP--------ETPGLVDAQPVEM 213
++ +EI+ +Q++++RFRQL D +E C+K ++ F E +A +
Sbjct: 258 LNKIISEIQALQDVVSRFRQLRLDATEFACLKCIVTFKAGVSTHSGSELRNFRNAAAISA 317
Query: 214 LQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLL 273
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG++PI R+L
Sbjct: 318 LQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIGNVPITRVL 377
Query: 274 GDMY 277
DMY
Sbjct: 378 SDMY 381
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 290 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 349
+A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR++ STIE +FFK+TIG+
Sbjct: 311 NAAAISALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSINPSTIEEVFFKKTIGN 370
Query: 350 IPIQRLLGDMY 360
+PI R+L DMY
Sbjct: 371 VPITRVLSDMY 381
>sp|Q9YGL3|NR2E1_ORYLA Nuclear receptor subfamily 2 group E member 1 OS=Oryzias latipes
GN=nr2e1 PE=2 SV=1
Length = 396
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 165/306 (53%), Gaps = 42/306 (13%)
Query: 1 VQHERGPRKPKIHN-------AHHQDSKLEPHNPHHS-PDLLPPNGISSVKIPPTVLYPP 52
VQHERGPR I H + + H P S P PP + ++ P L
Sbjct: 99 VQHERGPRTSTIRKQVALYFRGHKEVNGSSTHFPGSSLPG--PPFFTTVTQLEPHNLEMS 156
Query: 53 SGLKSP--------PPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVR 104
S +P P+ +P H+ P L + + C E+ ARLLFM+++
Sbjct: 157 SVATTPERQAIVGLAQPTPKYP------HEVSGTPMYLYEVATESVC-ESAARLLFMSIK 209
Query: 105 WVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV- 163
W + + F TL DQL+LL+++W+ELF+L +AQW+IP D + L+ A L +++
Sbjct: 210 WAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDSTTLL----AVSGLNSENME 265
Query: 164 --RVNN---EIKLIQEILARFRQLSPDGSECGCMKAVILF-------TPETPGLVDAQPV 211
R+N EI+ +QE++ RFRQ+ D +E C+K ++ F + E +A +
Sbjct: 266 AQRMNKIMAEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAVPTQGSAELRAFRNASAI 325
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
LQD+AQ L Y+ RY QP RFG+LLL+LP+LR+V STIE +FFK+ IG++PI R
Sbjct: 326 AALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIEEVFFKKNIGNVPITR 385
Query: 272 LLGDMY 277
LL DMY
Sbjct: 386 LLSDMY 391
Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 55/81 (67%)
Query: 280 EKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIE 339
+ S E +A + LQD+AQ L Y+ RY QP RFG+LLL+LP+LR+V STIE
Sbjct: 311 QGSAELRAFRNASAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSVSPSTIE 370
Query: 340 RLFFKETIGDIPIQRLLGDMY 360
+FFK+ IG++PI RLL DMY
Sbjct: 371 EVFFKKNIGNVPITRLLSDMY 391
>sp|Q9Y5X4|NR2E3_HUMAN Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3
PE=1 SV=1
Length = 410
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/191 (47%), Positives = 127/191 (66%), Gaps = 10/191 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN-- 150
ET+ARLLFMAV+W + L F +L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 222 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP 281
Query: 151 ----CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A+ RL + E +++QE ++RFR L+ D +E CMKA++LF PET GL
Sbjct: 282 EASAAGGAQGRL----TLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLK 337
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+
Sbjct: 338 DPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGN 397
Query: 267 IPIQRLLGDMY 277
P+++LL DM+
Sbjct: 398 TPMEKLLCDMF 408
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 332 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFF 391
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 392 RKTIGNTPMEKLLCDMF 408
>sp|Q9TTF0|NR2E3_BOVIN Photoreceptor-specific nuclear receptor OS=Bos taurus GN=NR2E3 PE=1
SV=2
Length = 411
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 161/302 (53%), Gaps = 27/302 (8%)
Query: 1 VQHERGPRKPKIHNAHHQDSKLEPH-NPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPP 59
VQ+ER PR +S+ EP P +P L G SS P G ++
Sbjct: 110 VQNERQPRSTAQVRMDSVESETEPRLQPLATPPALA--GPSSRGPTPVSAARALGPQALM 167
Query: 60 PPSHHHPSMFLATHQP----PPHPGLLQILMSA------------------EKCQETTAR 97
PP HHH L T + P I +++ + ET+AR
Sbjct: 168 PPGHHHFMASLITAETCTKLEPEDADENIDVTSNDPEFPSSPYSSSSPCALDSIHETSAR 227
Query: 98 LLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARER 157
LLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+ +A
Sbjct: 228 LLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDNCPLLALPEASAG 287
Query: 158 LPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQ 215
V + E +++QE ++RFR L+ D +E CMKA++LF PET GL D + VE LQ
Sbjct: 288 GSSQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQ 347
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
DQ+Q +L + + + Q RFG+LLL+LPSLR + +E LFF++TIG+ P+++LL D
Sbjct: 348 DQSQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLCD 407
Query: 276 MY 277
M+
Sbjct: 408 MF 409
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEML 297
GRL+L R + Q TI R F+ D P + + K ET GL D + VE L
Sbjct: 292 GRLVLASAETR-ILQETISR--FRALAVD-PTEFACMKALVLFKP-ETRGLKDPEHVEAL 346
Query: 298 QDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLG 357
QDQ+Q +L + + + Q RFG+LLL+LPSLR + +E LFF++TIG+ P+++LL
Sbjct: 347 QDQSQVMLSQHSKAHHPSQLVRFGKLLLLLPSLRFISSERVELLFFRKTIGNTPMEKLLC 406
Query: 358 DMY 360
DM+
Sbjct: 407 DMF 409
>sp|Q9QXZ7|NR2E3_MOUSE Photoreceptor-specific nuclear receptor OS=Mus musculus GN=Nr2e3
PE=1 SV=1
Length = 395
Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/185 (47%), Positives = 123/185 (66%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
ET+ARLLFMAV+W + L F L RDQ++LL+E+W ELFLL QWS+P D L+
Sbjct: 209 ETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCPLLAPP 268
Query: 153 KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
+A + E + +QE ++RFR L+ D +E C+KA++LF PET GL D + VE
Sbjct: 269 EASGSSQGRLALASAETRFLQETISRFRALAVDPTEFACLKALVLFKPETRGLKDPEHVE 328
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF++TIG+ P+++L
Sbjct: 329 ALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFFRKTIGNTPMEKL 388
Query: 273 LGDMY 277
L DM+
Sbjct: 389 LCDMF 393
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
ET GL D + VE LQDQ+Q +L + + + QP RFG+LLL+LPSLR + IE LFF
Sbjct: 317 ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFLTAERIELLFF 376
Query: 344 KETIGDIPIQRLLGDMY 360
++TIG+ P+++LL DM+
Sbjct: 377 RKTIGNTPMEKLLCDMF 393
>sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 OS=Bos taurus GN=NR2F1 PE=2 SV=1
Length = 424
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 214 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 273
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 274 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 333
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 334 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 393
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 394 LVGKTPIETLIRDMLLSGSSFNWP 417
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 335 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 394
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 395 VGKTPIETLIRDMLLSGSSF 414
>sp|P10589|COT1_HUMAN COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1
Length = 423
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 213 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 272
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 273 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 332
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 333 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 392
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 393 LVGKTPIETLIRDMLLSGSSFNWP 416
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 334 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 393
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 394 VGKTPIETLIRDMLLSGSSF 413
>sp|Q06725|N2F1A_DANRE Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio
GN=nr2f1a PE=2 SV=1
Length = 411
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 203 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 262
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 263 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTSDA 322
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 323 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 382
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 383 LVGKTPIETLIRDMLLSGSSFNWP 406
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 54/81 (66%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 324 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 383
Query: 347 IGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VGKTPIETLIRDMLLSGSSFN 404
>sp|Q60632|COT1_MOUSE COUP transcription factor 1 OS=Mus musculus GN=Nr2f1 PE=2 SV=2
Length = 422
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 212 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLH 271
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 272 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 331
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 332 CGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVR 391
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 392 LVGKTPIETLIRDMLLSGSSFNWP 415
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 54/80 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL DA +E LQ+++QC L +YVR +Y QP+RFG+LLL LPSLR V S IE+LFF
Sbjct: 333 GLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRL 392
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 393 VGKTPIETLIRDMLLSGSSF 412
>sp|Q90733|COT2_CHICK COUP transcription factor 2 OS=Gallus gallus GN=NR2F2 PE=2 SV=1
Length = 410
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 202 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 261
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 262 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 321
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 322 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 381
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 382 LVGKTPIETLIRDMLLSGSSFNWP 405
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 320 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 379
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 380 VRLVGKTPIETLIRDMLLSGSSFN 403
>sp|P43135|COT2_MOUSE COUP transcription factor 2 OS=Mus musculus GN=Nr2f2 PE=1 SV=2
Length = 414
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFN 407
>sp|P24468|COT2_HUMAN COUP transcription factor 2 OS=Homo sapiens GN=NR2F2 PE=1 SV=1
Length = 414
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFN 407
>sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 OS=Bos taurus GN=NR2F2 PE=2 SV=1
Length = 414
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFN 407
>sp|O09018|COT2_RAT COUP transcription factor 2 OS=Rattus norvegicus GN=Nr2f2 PE=1 SV=1
Length = 414
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E AR+LF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 206 IMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLH 265
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 266 VAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDA 325
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 326 CGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVR 385
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 386 LVGKTPIETLIRDMLLSGSSFNWP 409
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D VE LQ+++QC L +YVR +Y QPTRFG+LLL LPSLR V S IE+LFF
Sbjct: 324 DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFF 383
Query: 344 KETIGDIPIQRLLGDMYTMEKSYG 367
+G PI+ L+ DM S+
Sbjct: 384 VRLVGKTPIETLIRDMLLSGSSFN 407
>sp|Q6PH18|N2F1B_DANRE Nuclear receptor subfamily 2 group F member 1-B OS=Danio rerio
GN=nr2f1b PE=2 SV=1
Length = 389
Score = 148 bits (373), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 116/204 (56%), Gaps = 2/204 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M E E ARLLF AV W R + F L DQ+ LL+ +W ELF+L+ AQ S+P
Sbjct: 181 IMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQSSMPLH 240
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I+ QE + + + L D +E C KA++LFT +
Sbjct: 241 VAPLLAAAGLHASPMSADRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKAIVLFTSDA 300
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +YVR +Y QPTRFG+LLL LP+LR V S IE+LFF
Sbjct: 301 CGLSDIPHIEGLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPALRMVSSSVIEQLFFVR 360
Query: 263 TIGDIPIQRLLGDMYTMEKSYETP 286
+G PI+ L+ DM S+ P
Sbjct: 361 LVGKTPIETLIRDMLLSGSSFNWP 384
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 5/114 (4%)
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSY-----ETPGLVDAQPVEMLQDQAQCILGDYVRGRY 313
FF+E + + ++ Y+ K+ + GL D +E LQ+++QC L +YVR +Y
Sbjct: 269 FFQEQVEKLKALQVDSAEYSCAKAIVLFTSDACGLSDIPHIEGLQEKSQCALEEYVRSQY 328
Query: 314 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYG 367
QPTRFG+LLL LP+LR V S IE+LFF +G PI+ L+ DM S+
Sbjct: 329 PNQPTRFGKLLLRLPALRMVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFN 382
>sp|P16375|7UP1_DROME Steroid receptor seven-up, isoforms B/C OS=Drosophila melanogaster
GN=svp PE=2 SV=1
Length = 543
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 2/206 (0%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
+M + E ARLLF AV W + + F L DQ+ LL+ W ELF+L+ +Q S+P
Sbjct: 335 IMGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLH 394
Query: 145 LSLLINCEKARERLPPDD--VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET 202
++ L+ D V + I++ QE + + + L D +E C+KA++LFT +
Sbjct: 395 VAPLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTDA 454
Query: 203 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 262
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 455 CGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVR 514
Query: 263 TIGDIPIQRLLGDMYTMEKSYETPGL 288
+G PI+ L+ DM S+ P L
Sbjct: 515 LVGKTPIETLIRDMLLSGNSFSWPYL 540
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D +E LQ+++QC L +Y R +Y QPTRFG+LLL LPSLR V IE+LFF
Sbjct: 456 GLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLRTVSSQVIEQLFFVRL 515
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ L+ DM S+
Sbjct: 516 VGKTPIETLIRDMLLSGNSF 535
>sp|O16845|TLL_DROVI Protein tailless OS=Drosophila virilis GN=tll PE=3 SV=1
Length = 450
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 157/360 (43%), Gaps = 95/360 (26%)
Query: 1 VQHERGPRKPKI--HNAHHQDSKLEPHNPHHSPDLLPPNGISSV-KIPPTVLYPPS---- 53
VQHERGPR + H A ++D+ + G + + +IPP +L +
Sbjct: 106 VQHERGPRNSTLRRHMAMYKDAMM---------------GAAEMPQIPPEILMNTAALTG 150
Query: 54 --GLKSPPPP---SHHHPSMFLATHQPPPHPGLLQI------------------------ 84
GL P P SHHH ++ A QPPP +L +
Sbjct: 151 FPGLPMPMPGVQRSHHHAAL-SAAFQPPPSAAVLDLSVPRVPHHPVHQGHHGFFSPTAAY 209
Query: 85 --------------LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKE 130
LM+AE +ET A LF V W++ + F L DQLLLL+ESWKE
Sbjct: 210 MNALATRALPPTPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKE 269
Query: 131 LFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECG 190
F+L +AQ+ +P + + L+ ++ V E+ Q + R L+ D +E
Sbjct: 270 FFILAMAQYLMPMNFAQLLFVYESENANREIVTIVAREVHAFQAVPNRLCHLNIDSTEYE 329
Query: 191 CMKAVILF-----------------------------TPETPGLVDAQPVEMLQDQAQCI 221
C++A+ LF + E+ GL+++ V + + A+
Sbjct: 330 CLRAISLFRKSPPAASSTEDLANSSILTGSGSPNSSASAESRGLLESSKVAAMHNDARNA 389
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
L +Y+ + QP RF LL ++ + V TIE LFF++TIGDI I RL+ DMY+ K
Sbjct: 390 LHNYISRTHPNQPLRFQTLLGVVTLMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQRK 449
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y+ + QP RF LL ++ + V TIE L
Sbjct: 367 SAESRGLLESSKVAAMHNDARNALHNYISRTHPNQPLRFQTLLGVVTLMHKVSSFTIEEL 426
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 427 FFRKTIGDITIVRLISDMYSQRK 449
>sp|Q06726|NR2F5_DANRE Nuclear receptor subfamily 2 group F member 5 OS=Danio rerio
GN=nr2f5 PE=2 SV=1
Length = 403
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 119/208 (57%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
LM E E ARLLF AV W + + F L DQ+ LL+ SW ELF+L+ AQ S+P
Sbjct: 181 LMGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLH 240
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
++ L+ + ER+ V + I++ QE + + + L D +E C+K+++LF
Sbjct: 241 VAPLLAAAGLHASPMSAERV----VAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLF 296
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
T + GL D VE +Q+++QC L +YVR +Y QP RFGRLLL LPSLR V IE+L
Sbjct: 297 TSDAMGLSDVAHVESIQEKSQCALEEYVRNQYPNQPNRFGRLLLRLPSLRIVSSPVIEQL 356
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ LL DM SY P
Sbjct: 357 FFVRLVGKTPIETLLRDMLLSGSSYNWP 384
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 51/80 (63%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE +Q+++QC L +YVR +Y QP RFGRLLL LPSLR V IE+LFF
Sbjct: 302 GLSDVAHVESIQEKSQCALEEYVRNQYPNQPNRFGRLLLRLPSLRIVSSPVIEQLFFVRL 361
Query: 347 IGDIPIQRLLGDMYTMEKSY 366
+G PI+ LL DM SY
Sbjct: 362 VGKTPIETLLRDMLLSGSSY 381
>sp|P18102|TLL_DROME Protein tailless OS=Drosophila melanogaster GN=tll PE=2 SV=1
Length = 452
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 155/351 (44%), Gaps = 75/351 (21%)
Query: 1 VQHERGPRKPKI--HNAHHQDSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSP 58
VQHERGPR + H A ++D+ + P + N + P V P GL
Sbjct: 106 VQHERGPRNSTLRRHMAMYKDAMMGAGEMPQIPAEILMNTAALTGFP-GVPMPMPGL--- 161
Query: 59 PPPSHHHPSMFLATHQPPP---------------------HPGLLQI------------- 84
P + HHP+ +A QPPP H G
Sbjct: 162 PQRAGHHPA-HMAAFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRAL 220
Query: 85 -----LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW 139
LM+AE +ET A LF V W++ + F L DQLLLL+ESWKE F+L +AQ+
Sbjct: 221 PPTPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQY 280
Query: 140 SIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF- 198
+P + + L+ ++ V E+ QE+L + L+ D +E C++A+ LF
Sbjct: 281 LMPMNFAQLLFVYESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFR 340
Query: 199 ----------------------------TPETPGLVDAQPVEMLQDQAQCILGDYVRGRY 230
+ E+ GL+++ V + + A+ L +Y++ +
Sbjct: 341 KSPPSASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTH 400
Query: 231 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281
QP RF LL ++ + V TIE LFF++TIGDI I RL+ DMY+ K
Sbjct: 401 PSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQRK 451
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S E+ GL+++ V + + A+ L +Y++ + QP RF LL ++ + V TIE L
Sbjct: 369 SAESRGLLESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSFTIEEL 428
Query: 342 FFKETIGDIPIQRLLGDMYTMEK 364
FF++TIGDI I RL+ DMY+ K
Sbjct: 429 FFRKTIGDITIVRLISDMYSQRK 451
>sp|O09017|NR2F6_RAT Nuclear receptor subfamily 2 group F member 6 OS=Rattus norvegicus
GN=Nr2f6 PE=2 SV=1
Length = 390
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 115/208 (55%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
++ + E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ +P
Sbjct: 183 VLGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVGLLRLSWSELFVLNAAQAPVPLH 242
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
+ L+ A ER V ++++ QE + + +L D +E GC+KA+ LF
Sbjct: 243 TAPLLAAAGLHAGPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALF 298
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
TP+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +L
Sbjct: 299 TPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQL 358
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ L+ DM ++ P
Sbjct: 359 FFMRLVGKTPIETLIRDMLLSGSTFNWP 386
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 304 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 363
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 364 VGKTPIETLIRDM 376
>sp|P43136|NR2F6_MOUSE Nuclear receptor subfamily 2 group F member 6 OS=Mus musculus
GN=Nr2f6 PE=1 SV=2
Length = 390
Score = 118 bits (296), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 116/208 (55%), Gaps = 10/208 (4%)
Query: 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144
++ + E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P
Sbjct: 183 VLGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLH 242
Query: 145 LSLLINCEK------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILF 198
+ L+ A ER V ++++ QE + + +L D +E GC+KA+ LF
Sbjct: 243 TAPLLAAAGLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALF 298
Query: 199 TPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 258
TP+ GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +L
Sbjct: 299 TPDACGLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQL 358
Query: 259 FFKETIGDIPIQRLLGDMYTMEKSYETP 286
FF +G PI+ L+ DM ++ P
Sbjct: 359 FFMRLVGKTPIETLIRDMLLSGSTFNWP 386
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 304 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 363
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 364 VGKTPIETLIRDM 376
>sp|P10588|NR2F6_HUMAN Nuclear receptor subfamily 2 group F member 6 OS=Homo sapiens
GN=NR2F6 PE=1 SV=2
Length = 404
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
E ARLLF V W R F L DQ+ LL+ SW ELF+L+ AQ ++P + L+
Sbjct: 204 ELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAA 263
Query: 153 K------ARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206
A ER V ++++ QE + + +L D +E GC+KA+ LFTP+ GL
Sbjct: 264 GLHAAPMAAERA----VAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLS 319
Query: 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD 266
D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF +G
Sbjct: 320 DPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGK 379
Query: 267 IPIQRLLGDMYTMEKSYETP 286
PI+ L+ DM ++ P
Sbjct: 380 TPIETLIRDMLLSGSTFNWP 399
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 49/73 (67%)
Query: 287 GLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 346
GL D VE LQ++AQ L +YVR +Y QP RFGRLLL LP+LRAV S I +LFF
Sbjct: 317 GLSDPAHVESLQEKAQVALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRL 376
Query: 347 IGDIPIQRLLGDM 359
+G PI+ L+ DM
Sbjct: 377 VGKTPIETLIRDM 389
>sp|Q5I7G2|RXR_LYMST Retinoic acid receptor RXR OS=Lymnaea stagnalis GN=RXR PE=1 SV=1
Length = 436
Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 99/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 243 CQ-AADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLA 301
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R++ D +E GC++AV+LF P+ GL Q
Sbjct: 302 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAVVLFNPDAKGLTAVQ 361
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 362 EVEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPI 421
Query: 270 QRLLGDM 276
L +M
Sbjct: 422 DTFLMEM 428
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 353 DAKGLTAVQEVEQLREKVYASLEEYTKTRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFF 412
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 413 FKLIGDQPIDTFLMEM 428
>sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gamma OS=Xenopus laevis GN=rxrg PE=2
SV=1
Length = 470
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L DQ++LL+ W EL + + S+ +L+ R
Sbjct: 284 LFTLVEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 343
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
+ V + +++ E++++ + + D SE GC++A++LF P+ GL +A VE L+++
Sbjct: 344 SAHNAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLFNPDAKGLSNAAEVEALREK 403
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 404 VYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 462
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL +A VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 387 DAKGLSNAAEVEALREKVYATLESYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 446
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 447 FKLIGDTPIDTFLMEM 462
>sp|Q8T5C6|RXR_BIOGL Retinoic acid receptor RXR OS=Biomphalaria glabrata GN=RXR PE=1
SV=1
Length = 436
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 243 CQ-AADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIMAKDGILLA 301
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++A+ R + D +E GC++AV+LF P+ GL Q
Sbjct: 302 TGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGLTAVQ 361
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 362 EVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDQPI 421
Query: 270 QRLLGDM 276
L +M
Sbjct: 422 DTFLMEM 428
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL Q VE L+++ L +Y + RY +P RF +LLL LP+LR++ +E LFF
Sbjct: 353 DAKGLTAVQEVEQLREKVYASLEEYTKSRYPEEPGRFAKLLLRLPALRSIGLKCLEHLFF 412
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 413 FKLIGDQPIDTFLMEM 428
>sp|P49116|NR2C2_HUMAN Nuclear receptor subfamily 2 group C member 2 OS=Homo sapiens
GN=NR2C2 PE=1 SV=1
Length = 596
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTSTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>sp|P55094|NR2C2_RAT Nuclear receptor subfamily 2 group C member 2 OS=Rattus norvegicus
GN=Nr2c2 PE=2 SV=1
Length = 596
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGHEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>sp|P49117|NR2C2_MOUSE Nuclear receptor subfamily 2 group C member 2 OS=Mus musculus
GN=Nr2c2 PE=1 SV=1
Length = 596
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC- 151
E+ +RLLF+++ W R + FQ L + L++ W ELF L LAQ + LS ++
Sbjct: 388 ESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAI 447
Query: 152 ------EKARERLPPDDVR-VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG 204
++L D ++ V I +QE +L DG E +KA++LF+P+ PG
Sbjct: 448 VNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPG 507
Query: 205 LVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI 264
L +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF I
Sbjct: 508 LTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLI 567
Query: 265 GDIPIQRLLGDMYTMEKS 282
G++ I ++ + ME +
Sbjct: 568 GNVSIDSIIPYILKMETA 585
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
PGL +E Q++AQ L DYV+ YS R R+L+ LP+LR + + E LFF
Sbjct: 506 PGLTGTSQIEKFQEKAQMELQDYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTG 565
Query: 346 TIGDIPIQRLLGDMYTMEKS 365
IG++ I ++ + ME +
Sbjct: 566 LIGNVSIDSIIPYILKMETA 585
>sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gamma OS=Mus musculus GN=Rxrg PE=2 SV=2
Length = 463
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDSFLMEM 455
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDSFLMEM 455
>sp|Q0GFF6|RXRG_PIG Retinoic acid receptor RXR-gamma OS=Sus scrofa GN=RXRG PE=2 SV=2
Length = 463
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>sp|Q5REL6|RXRG_PONAB Retinoic acid receptor RXR-gamma OS=Pongo abelii GN=RXRG PE=2 SV=1
Length = 463
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos taurus GN=RXRG PE=2 SV=1
Length = 463
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>sp|P48443|RXRG_HUMAN Retinoic acid receptor RXR-gamma OS=Homo sapiens GN=RXRG PE=1 SV=1
Length = 463
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus norvegicus GN=Rxrg PE=2
SV=1
Length = 463
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 336
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL + VE L+++
Sbjct: 337 SAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREK 396
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 397 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 455
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 380 DAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 439
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 440 FKLIGDTPIDTFLMEM 455
>sp|P28701|RXRG_CHICK Retinoic acid receptor RXR-gamma OS=Gallus gallus GN=RXRG PE=2 SV=1
Length = 467
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L+ DQ++LL+ W EL + + S+ +L+ R
Sbjct: 281 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRS 340
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D SE GC++A++LF P+ GL VE L+++
Sbjct: 341 SAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSSPSEVESLREK 400
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 401 VYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 459
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DAKGLSSPSEVESLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus norvegicus GN=Rxra PE=2
SV=1
Length = 467
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 274 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 333 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 452
Query: 270 QRLLGDM 276
L +M
Sbjct: 453 DTFLMEM 459
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus musculus GN=Rxra PE=1 SV=1
Length = 467
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 274 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 332
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 333 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 392
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 393 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 452
Query: 270 QRLLGDM 276
L +M
Sbjct: 453 DTFLMEM 459
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 384 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 443
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 444 FKLIGDTPIDTFLMEM 459
>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1
Length = 462
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 269 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 327
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 328 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA 387
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 388 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 447
Query: 270 QRLLGDM 276
L +M
Sbjct: 448 DTFLMEM 454
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 379 DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 438
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 439 FKLIGDTPIDTFLMEM 454
>sp|Q6DHP9|RXRGB_DANRE Retinoic acid receptor RXR-gamma-B OS=Danio rerio GN=rxrgb PE=2
SV=1
Length = 452
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 96/179 (53%), Gaps = 1/179 (0%)
Query: 99 LFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158
LF V W + + F L DQ++LL+ W EL + + SI +L+ R
Sbjct: 266 LFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSITVKDGILLGTGLHVHRS 325
Query: 159 PPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQ 217
V + +++ E++++ + + D +E GC++A++LF P+ GL ++ VE L+++
Sbjct: 326 SAHSAGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSNSLEVEALREK 385
Query: 218 AQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 386 VYASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 444
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL ++ VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 369 DAKGLSNSLEVEALREKVYASLETYTKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 428
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 429 FKLIGDTPIDTFLMEM 444
>sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Danio rerio GN=rxraa PE=2
SV=2
Length = 430
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 237 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 295
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 296 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPG 355
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 356 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 415
Query: 270 QRLLGDM 276
L +M
Sbjct: 416 DTFLMEM 422
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 347 DSKGLSNPGEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 406
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 407 FKLIGDTPIDTFLMEM 422
>sp|Q90416|RXRGA_DANRE Retinoic acid receptor RXR-gamma-A OS=Danio rerio GN=rxrga PE=2
SV=2
Length = 441
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 13/220 (5%)
Query: 58 PPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSK 117
P ++ SM +T+ P + I +A+K LF V W + + F L
Sbjct: 226 PKTEAYMESSMSNSTNDP-----VTNICQAADK-------QLFTLVEWAKRIPHFSDLPL 273
Query: 118 RDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEI-KLIQEIL 176
DQ++LL+ W EL + + S+ +L+ R V + +++ E++
Sbjct: 274 DDQVILLRAGWNELLIASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELV 333
Query: 177 ARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236
++ R + D +E GC++A++LF P+ GL + VE L+++ L Y + Y QP R
Sbjct: 334 SKMRDMQMDKTELGCLRAIVLFNPDAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGR 393
Query: 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
F +LLL LP+LR++ +E LFF + IGD PI L +M
Sbjct: 394 FAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 433
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE L+++ L Y + Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 358 DAKGLSNPSEVEALREKVYASLEGYTKHNYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 417
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 418 FKLIGDTPIDTFLMEM 433
>sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha OS=Xenopus laevis GN=rxra PE=1
SV=1
Length = 488
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 295 CQ-AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 353
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 354 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPL 413
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 414 EVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 473
Query: 270 QRLLGDM 276
L +M
Sbjct: 474 DTFLMEM 480
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 405 DSKGLSNPLEVEALREKVYASLEAYCKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFF 464
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 465 FKLIGDTPIDTFLMEM 480
>sp|Q90415|RXRAB_DANRE Retinoic acid receptor RXR-alpha-B OS=Danio rerio GN=rxrab PE=2
SV=1
Length = 379
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F L DQ++LL+ W EL + + SI +L+
Sbjct: 186 CQ-AADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLA 244
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 245 TGLHVHRNSAHTAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPS 304
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 305 EVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 364
Query: 270 QRLLGDM 276
L +M
Sbjct: 365 DTFLMEM 371
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
++ GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF
Sbjct: 296 DSKGLSNPSEVEALRERVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF 355
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 356 FKLIGDTPIDTFLMEM 371
>sp|Q7SYN5|RXRBA_DANRE Retinoic acid receptor RXR-beta-A OS=Danio rerio GN=rxrba PE=2 SV=1
Length = 471
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 16/201 (7%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F LS DQ++LL+ W EL + + SI +L+
Sbjct: 264 CQ-AADKQLFTLVEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGILLA 322
Query: 151 CEKARERLPPDDVRV----------NNEI-----KLIQEILARFRQLSPDGSECGCMKAV 195
R V N E+ +++ E++++ R + D +E GC++A+
Sbjct: 323 TGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGCLRAI 382
Query: 196 ILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTI 255
ILF P+ GL VE+L+++ L Y + RY Q RF +LLL LP+LR++ +
Sbjct: 383 ILFNPDAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCL 442
Query: 256 ERLFFKETIGDIPIQRLLGDM 276
E LFF + IGD PI L +M
Sbjct: 443 EHLFFFKLIGDTPIDTFLMEM 463
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL VE+L+++ L Y + RY Q RF +LLL LP+LR++ +E LFF
Sbjct: 388 DAKGLSSPSEVELLREKVYASLEAYCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFF 447
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 448 FKLIGDTPIDTFLMEM 463
>sp|Q5TJF7|RXRB_CANFA Retinoic acid receptor RXR-beta OS=Canis familiaris GN=RXRB PE=3
SV=1
Length = 533
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 340 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 398
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 399 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 458
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 459 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 518
Query: 270 QRLLGDM 276
L +M
Sbjct: 519 DTFLMEM 525
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 510 FKLIGDTPIDTFLMEM 525
>sp|P28702|RXRB_HUMAN Retinoic acid receptor RXR-beta OS=Homo sapiens GN=RXRB PE=1 SV=2
Length = 533
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 340 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 398
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 399 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPS 458
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 459 EVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 518
Query: 270 QRLLGDM 276
L +M
Sbjct: 519 DTFLMEM 525
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 450 DAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 509
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 510 FKLIGDTPIDTFLMEM 525
>sp|P49743|RXRB_RAT Retinoic acid receptor RXR-beta (Fragment) OS=Rattus norvegicus
GN=Rxrb PE=2 SV=1
Length = 458
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 2/187 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ + LF V W + + F +L DQ++LL+ W EL + + SI +L+
Sbjct: 265 CQ-AADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLA 323
Query: 151 CEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
R V +++ E++++ R + D +E GC++A+ILF P+ GL +
Sbjct: 324 TGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPG 383
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF + IGD PI
Sbjct: 384 EVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI 443
Query: 270 QRLLGDM 276
L +M
Sbjct: 444 DTFLMEM 450
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL + VE+L+++ L Y + +Y Q RF +LLL LP+LR++ +E LFF
Sbjct: 375 DAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFF 434
Query: 344 KETIGDIPIQRLLGDM 359
+ IGD PI L +M
Sbjct: 435 FKLIGDTPIDTFLMEM 450
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,778,520
Number of Sequences: 539616
Number of extensions: 6293230
Number of successful extensions: 24069
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 356
Number of HSP's that attempted gapping in prelim test: 20813
Number of HSP's gapped (non-prelim): 2640
length of query: 367
length of database: 191,569,459
effective HSP length: 119
effective length of query: 248
effective length of database: 127,355,155
effective search space: 31584078440
effective search space used: 31584078440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)