Query psy6602
Match_columns 367
No_of_seqs 293 out of 1529
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 22:19:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e2r_A Estrogen-related recept 100.0 5.7E-39 2E-43 292.7 20.1 213 65-280 30-242 (244)
2 3k6p_A Steroid hormone recepto 100.0 5.5E-39 1.9E-43 293.5 17.5 212 65-279 30-245 (248)
3 3ltx_A Estrogen receptor; cons 100.0 1.7E-38 5.9E-43 289.4 19.9 211 69-282 22-233 (243)
4 3v3e_B Nuclear receptor subfam 100.0 2.5E-39 8.7E-44 296.7 12.9 190 87-278 53-244 (257)
5 1g2n_A Ultraspiracle protein; 100.0 3.9E-38 1.3E-42 290.6 19.2 217 67-283 22-258 (264)
6 1fcy_A RAR-gamma-1, retinoic a 100.0 2.1E-38 7.2E-43 287.7 17.0 193 86-278 44-236 (236)
7 2iz2_A FTZ-F1 alpha, nuclear h 100.0 3.1E-37 1.1E-41 281.0 20.7 195 86-280 46-242 (243)
8 1xpc_A Estrogen receptor; nucl 100.0 1.6E-37 5.4E-42 284.0 16.8 213 66-281 18-242 (248)
9 3ilz_A Thyroid hormone recepto 100.0 1.4E-37 4.8E-42 287.1 16.6 201 80-280 64-265 (267)
10 3oll_A Estrogen receptor beta; 100.0 5E-37 1.7E-41 279.4 19.7 204 74-280 24-238 (240)
11 3p0u_A Nuclear receptor subfam 100.0 1.8E-37 6.1E-42 283.7 16.8 196 87-282 35-238 (249)
12 3f5c_B Nuclear receptor subfam 100.0 2.4E-37 8.2E-42 285.2 17.5 197 83-279 44-266 (268)
13 3plz_A FTZ-F1 related protein; 100.0 2.6E-37 8.8E-42 283.7 17.1 200 81-280 51-255 (257)
14 3cjw_A COUP transcription fact 100.0 4.1E-37 1.4E-41 280.6 18.4 199 86-284 37-237 (244)
15 3kmr_A Retinoic acid receptor 100.0 2.1E-37 7.2E-42 285.6 16.4 195 87-281 69-263 (266)
16 1yye_A ER-beta, estrogen recep 100.0 5.2E-37 1.8E-41 283.4 18.7 209 71-282 19-238 (268)
17 2nxx_A Ultraspiracle (USP, NR2 100.0 4.6E-37 1.6E-41 278.7 18.0 196 86-281 37-233 (235)
18 3ipq_A Oxysterols receptor LXR 100.0 3E-37 1E-41 287.3 16.8 201 79-280 81-282 (283)
19 3vi8_A Peroxisome proliferator 100.0 5.1E-37 1.7E-41 283.7 17.3 191 87-278 77-270 (273)
20 1ymt_A Steroidogenic factor 1; 100.0 7.9E-37 2.7E-41 279.0 18.1 196 85-280 44-244 (246)
21 2ocf_A Estrogen receptor; estr 100.0 8E-37 2.8E-41 285.7 18.2 213 66-281 27-251 (298)
22 1nq7_A Nuclear receptor ROR-be 100.0 7.8E-37 2.7E-41 278.6 17.6 192 85-278 49-244 (244)
23 1xdk_B RAR-beta, retinoic acid 100.0 7E-37 2.4E-41 287.4 17.6 196 87-282 72-267 (303)
24 3b0t_A Vitamin D3 receptor; nu 100.0 6.6E-37 2.3E-41 280.9 16.8 196 83-278 53-254 (254)
25 2r40_D Ecdysone receptor, 20-h 100.0 7.7E-37 2.6E-41 282.0 16.7 195 84-280 66-263 (266)
26 3vhv_A Mineralocorticoid recep 100.0 7.9E-37 2.7E-41 281.0 16.0 215 64-281 21-244 (260)
27 3mnp_A Glucocorticoid receptor 100.0 1.5E-36 5.3E-41 279.1 17.6 214 64-280 23-244 (261)
28 1hg4_A Ultraspiracle; nuclear 100.0 4.1E-36 1.4E-40 279.3 19.6 199 85-283 46-272 (279)
29 1l2j_A Estrogen receptor beta; 100.0 2.5E-36 8.4E-41 279.3 17.5 209 71-282 47-266 (271)
30 1n83_A Nuclear receptor ROR-al 100.0 5.8E-36 2E-40 276.6 19.7 194 85-280 64-261 (270)
31 1xvp_B Orphan nuclear receptor 100.0 1.8E-36 6.2E-41 276.7 15.5 191 85-278 53-246 (246)
32 1nrl_A Orphan nuclear receptor 100.0 3.6E-36 1.2E-40 283.0 17.8 195 84-281 118-315 (316)
33 2hc4_A Vitamin D receptor; alp 100.0 5.1E-36 1.7E-40 281.0 18.4 198 83-281 99-301 (302)
34 2o4j_A Vitamin D3 receptor; nu 100.0 2.8E-36 9.6E-41 281.7 16.1 198 84-281 57-260 (292)
35 3tx7_B Nuclear receptor subfam 100.0 2.5E-36 8.6E-41 287.7 16.0 199 82-280 147-350 (352)
36 1sqn_A PR, progesterone recept 100.0 5.6E-36 1.9E-40 275.5 16.9 211 65-280 23-244 (261)
37 3n00_A REV-ERBA-alpha; reverba 100.0 5.1E-36 1.7E-40 273.0 16.4 200 64-263 39-242 (245)
38 1pdu_A DHR38, nuclear hormone 100.0 3E-36 1E-40 274.5 14.6 193 86-280 47-241 (244)
39 3vhu_A Mineralocorticoid recep 100.0 4.9E-36 1.7E-40 279.7 16.4 215 64-281 55-278 (294)
40 3cqv_A Nuclear receptor subfam 100.0 8.6E-36 2.9E-40 263.6 15.6 178 87-264 21-198 (199)
41 1t7r_A Androgen receptor; nucl 100.0 6.2E-36 2.1E-40 276.4 15.0 214 65-281 31-253 (269)
42 2p1t_A Retinoic acid receptor 100.0 1.6E-35 5.6E-40 269.4 17.5 195 87-281 42-237 (240)
43 2nxx_E Ecdysone receptor (ECR, 100.0 1.4E-35 4.9E-40 270.9 17.1 195 84-280 50-245 (248)
44 1z5x_E Ecdysone receptor ligan 100.0 1.6E-35 5.5E-40 278.2 17.4 196 83-280 113-309 (310)
45 3l0l_A Nuclear receptor ROR-ga 100.0 1.2E-35 4E-40 271.3 15.7 191 84-278 54-248 (248)
46 1lbd_A RXR_LBD, retinoid X rec 100.0 1.4E-35 4.9E-40 276.0 15.7 196 86-281 83-279 (282)
47 1osh_A BIle acid receptor; nuc 100.0 2.7E-35 9.3E-40 266.5 13.4 189 86-279 42-231 (232)
48 1ovl_A Orphan nuclear receptor 100.0 1.3E-34 4.5E-39 268.0 18.2 191 86-278 74-266 (271)
49 3u9q_A Peroxisome proliferator 100.0 1.8E-34 6E-39 266.3 15.5 187 90-278 76-267 (269)
50 1pzl_A Hepatocyte nuclear fact 100.0 1.1E-33 3.9E-38 256.6 19.6 199 82-280 37-236 (237)
51 3up3_A Acedaf-12; ligand bindi 100.0 5.7E-35 1.9E-39 265.7 10.8 189 88-279 43-242 (243)
52 3dzy_A Retinoic acid receptor 100.0 9.4E-34 3.2E-38 279.9 17.0 192 89-280 271-463 (467)
53 3dzy_D Peroxisome proliferator 100.0 6.9E-33 2.4E-37 270.7 18.8 189 88-278 224-416 (419)
54 3gyt_A Nuclear hormone recepto 100.0 1.6E-32 5.3E-37 248.9 13.9 188 87-279 42-242 (244)
55 3f5c_B Nuclear receptor subfam 99.7 8.5E-18 2.9E-22 154.5 8.9 113 236-363 155-267 (268)
56 3plz_A FTZ-F1 related protein; 99.7 1.9E-17 6.4E-22 151.5 9.4 110 240-364 147-256 (257)
57 3ltx_A Estrogen receptor; cons 99.7 2.5E-17 8.7E-22 149.4 9.0 113 238-365 121-233 (243)
58 3p0u_A Nuclear receptor subfam 99.7 1.9E-17 6.5E-22 150.8 7.8 114 236-364 124-237 (249)
59 3tx7_B Nuclear receptor subfam 99.7 8.2E-17 2.8E-21 153.1 9.7 110 240-364 242-351 (352)
60 2iz2_A FTZ-F1 alpha, nuclear h 99.7 1E-16 3.5E-21 145.4 9.5 111 239-364 133-243 (243)
61 3k6p_A Steroid hormone recepto 99.7 7.1E-17 2.4E-21 146.9 8.1 112 237-363 131-246 (248)
62 2e2r_A Estrogen-related recept 99.7 1.1E-16 3.9E-21 145.2 9.2 113 237-364 131-243 (244)
63 1fcy_A RAR-gamma-1, retinoic a 99.7 1.4E-16 4.7E-21 144.0 9.6 109 238-361 128-236 (236)
64 3vi8_A Peroxisome proliferator 99.7 2.7E-16 9.4E-21 144.8 11.2 109 238-361 161-270 (273)
65 1ymt_A Steroidogenic factor 1; 99.7 1.7E-16 5.9E-21 144.2 8.9 111 239-364 135-245 (246)
66 3v3e_B Nuclear receptor subfam 99.7 1.7E-16 5.8E-21 145.0 8.8 109 237-361 134-244 (257)
67 3kmr_A Retinoic acid receptor 99.6 2.7E-16 9.2E-21 144.5 9.4 110 239-363 153-262 (266)
68 3cjw_A COUP transcription fact 99.6 4.7E-16 1.6E-20 141.2 9.9 111 239-364 124-234 (244)
69 3dzy_A Retinoic acid receptor 99.6 2.8E-16 9.6E-21 155.0 7.0 150 200-364 292-464 (467)
70 1g2n_A Ultraspiracle protein; 99.6 8.3E-16 2.8E-20 141.2 9.7 109 240-363 147-255 (264)
71 1hg4_A Ultraspiracle; nuclear 99.6 1.4E-15 4.7E-20 140.8 10.6 108 242-364 163-270 (279)
72 3ilz_A Thyroid hormone recepto 99.6 6.9E-16 2.4E-20 141.9 8.3 110 239-363 155-265 (267)
73 1xdk_B RAR-beta, retinoic acid 99.6 9.4E-16 3.2E-20 143.5 9.2 113 237-364 154-266 (303)
74 2nxx_A Ultraspiracle (USP, NR2 99.6 5E-16 1.7E-20 140.2 6.8 108 242-364 126-233 (235)
75 1osh_A BIle acid receptor; nuc 99.6 1.8E-15 6.1E-20 136.3 9.9 111 237-363 122-232 (232)
76 3u9q_A Peroxisome proliferator 99.6 1.5E-15 5E-20 139.7 9.2 109 239-362 159-268 (269)
77 2p1t_A Retinoic acid receptor 99.6 1.4E-15 4.7E-20 137.7 8.7 109 242-365 130-238 (240)
78 3dzy_D Peroxisome proliferator 99.6 1.4E-15 4.7E-20 148.4 9.2 148 200-362 246-417 (419)
79 3oll_A Estrogen receptor beta; 99.6 1.1E-15 3.6E-20 138.4 6.5 111 239-364 119-239 (240)
80 3ipq_A Oxysterols receptor LXR 99.6 3.8E-15 1.3E-19 138.0 9.6 111 237-363 172-282 (283)
81 3b0t_A Vitamin D3 receptor; nu 99.6 1.9E-15 6.7E-20 137.9 7.1 110 237-361 141-254 (254)
82 1pdu_A DHR38, nuclear hormone 99.6 2.9E-15 1E-19 135.8 7.5 110 238-363 130-241 (244)
83 2hc4_A Vitamin D receptor; alp 99.6 4.1E-15 1.4E-19 139.0 7.9 112 237-363 187-300 (302)
84 1nrl_A Orphan nuclear receptor 99.6 5E-15 1.7E-19 139.0 8.2 108 240-363 205-314 (316)
85 1lbd_A RXR_LBD, retinoid X rec 99.5 2.9E-15 1E-19 138.8 6.2 109 242-365 172-280 (282)
86 1nq7_A Nuclear receptor ROR-be 99.5 6.1E-15 2.1E-19 133.8 8.0 108 238-361 133-244 (244)
87 2o4j_A Vitamin D3 receptor; nu 99.5 7.2E-15 2.5E-19 136.7 8.1 113 237-364 144-260 (292)
88 2ocf_A Estrogen receptor; estr 99.5 2.9E-15 9.8E-20 139.7 5.1 114 237-365 128-252 (298)
89 2r40_D Ecdysone receptor, 20-h 99.5 8.2E-15 2.8E-19 134.6 7.9 111 237-364 151-264 (266)
90 1xpc_A Estrogen receptor; nucl 99.5 1.8E-15 6.1E-20 137.6 2.7 114 238-366 120-244 (248)
91 1xvp_B Orphan nuclear receptor 99.5 1E-14 3.5E-19 132.5 7.4 106 239-361 139-246 (246)
92 1yye_A ER-beta, estrogen recep 99.5 4.1E-15 1.4E-19 136.8 4.8 113 238-365 116-238 (268)
93 1n83_A Nuclear receptor ROR-al 99.5 9.2E-15 3.1E-19 134.5 7.1 110 238-363 148-261 (270)
94 1l2j_A Estrogen receptor beta; 99.5 7.7E-15 2.6E-19 135.1 4.5 113 239-366 145-267 (271)
95 1ovl_A Orphan nuclear receptor 99.5 1.1E-13 3.7E-18 127.5 9.8 110 236-361 155-266 (271)
96 2nxx_E Ecdysone receptor (ECR, 99.5 6.6E-14 2.3E-18 127.2 8.0 111 237-364 135-246 (248)
97 1pzl_A Hepatocyte nuclear fact 99.5 1.4E-13 4.8E-18 124.0 9.6 107 242-363 130-236 (237)
98 3l0l_A Nuclear receptor ROR-ga 99.5 2.5E-14 8.6E-19 130.0 4.6 107 237-361 138-248 (248)
99 1z5x_E Ecdysone receptor ligan 99.5 1E-13 3.5E-18 129.8 8.4 110 237-363 199-309 (310)
100 3vhv_A Mineralocorticoid recep 99.4 1E-13 3.6E-18 126.8 6.5 110 239-363 127-243 (260)
101 3up3_A Acedaf-12; ligand bindi 99.4 2.2E-14 7.6E-19 129.9 1.7 106 240-363 133-243 (243)
102 3gyt_A Nuclear hormone recepto 99.4 1E-13 3.5E-18 125.3 3.2 80 282-363 160-243 (244)
103 3vhu_A Mineralocorticoid recep 99.4 5.7E-13 1.9E-17 123.8 6.2 110 239-363 161-277 (294)
104 3cqv_A Nuclear receptor subfam 99.4 8.1E-13 2.8E-17 116.0 6.9 96 237-347 103-198 (199)
105 1t7r_A Androgen receptor; nucl 99.3 7.6E-13 2.6E-17 121.6 5.1 110 239-363 136-252 (269)
106 3mnp_A Glucocorticoid receptor 99.3 1.3E-12 4.3E-17 119.6 6.5 111 238-363 128-244 (261)
107 3n00_A REV-ERBA-alpha; reverba 99.3 1.2E-12 4.1E-17 118.6 5.0 94 238-346 149-242 (245)
108 1sqn_A PR, progesterone recept 99.3 1.1E-12 3.7E-17 120.1 4.5 107 240-363 129-244 (261)
109 1v9x_A Poly (ADP-ribose) polym 23.6 38 0.0013 25.9 2.1 23 104-126 67-89 (114)
110 1uw0_A DNA ligase III; DNA rep 22.3 48 0.0016 25.4 2.4 21 106-126 73-93 (117)
111 3odc_A Poly [ADP-ribose] polym 21.9 32 0.0011 26.2 1.2 21 106-126 75-95 (111)
112 2v79_A DNA replication protein 20.5 1.6E+02 0.0054 22.9 5.2 27 174-200 20-46 (135)
No 1
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=100.00 E-value=5.7e-39 Score=292.75 Aligned_cols=213 Identities=22% Similarity=0.386 Sum_probs=188.6
Q ss_pred CCcccccCCCCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy6602 65 HPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144 (367)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~ 144 (367)
+|..+++.+++..|++.. ..++++++++.+.++.+|+|||++|||.+|+.+||++|||++|+|+++++.|||++..+
T Consensus 30 ep~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~ 106 (244)
T 2e2r_A 30 EPEKIYAMPDPTVPDSDI---KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFE 106 (244)
T ss_dssp CCCCCCCCCCTTSCCCHH---HHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCcccCCCCCCCCcchh---HHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccC
Confidence 445566666666665443 45889999999999999999999999999999999999999999999999999999887
Q ss_pred CceEecCCccccCCCCCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHH
Q psy6602 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGD 224 (367)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~ 224 (367)
+..++.++..+.+......+..+.++.+.+++.+|++|++|++||+|||||+||+||++|+++..+|+++|++|..+|.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~ 186 (244)
T 2e2r_A 107 DELVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQD 186 (244)
T ss_dssp SCEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCCTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCEeecHHHhhhccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 77777666554433222234567778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcchHHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 225 YVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 225 y~~~~~~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
||..+|++++.||++|+++++.||+++..+.|.+++.+.++..++++++.||++..
T Consensus 187 y~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~ 242 (244)
T 2e2r_A 187 YEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK 242 (244)
T ss_dssp HHHHHCTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCCSCCCHHHHHHHTSC
T ss_pred HHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999864
No 2
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=100.00 E-value=5.5e-39 Score=293.52 Aligned_cols=212 Identities=24% Similarity=0.387 Sum_probs=177.6
Q ss_pred CCcccccCCCCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy6602 65 HPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144 (367)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~ 144 (367)
+|..+++++++..|++. ...++++++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++++.||+++..+
T Consensus 30 ep~~~~~~~~~~~~~~~---~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~~s~~~~ 106 (248)
T 3k6p_A 30 EPEKLYAMPDPAGPDGH---LPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQ 106 (248)
T ss_dssp SCCCCCCCC-------C---CCHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CCcccccCCCCCCCCch---hhHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 45556666665555433 455889999999999999999999999999999999999999999999999999999877
Q ss_pred CceEecCCccccCCCCCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHH
Q psy6602 145 LSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGD 224 (367)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~ 224 (367)
+..++.++....+......+..+.++.+.+++.+|++|++|++||+|||||+||+||++|+++..+|+++|++|..+|.+
T Consensus 107 ~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~ 186 (248)
T 3k6p_A 107 DELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLE 186 (248)
T ss_dssp SCEEEETTEEECHHHHHHTTTTTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTCCCTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CeEEeCCCcccChhhhhhccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 55555554333322211123445678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC----CcchHHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcc
Q psy6602 225 YVRGRYS----RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTM 279 (367)
Q Consensus 225 y~~~~~~----~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~ 279 (367)
||..+|+ +++.||++|+++++.||+++..+.|.+++.+.++..++++++.||++.
T Consensus 187 y~~~~~~~~~~~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~k~~g~~~i~~Ll~Eml~~ 245 (248)
T 3k6p_A 187 YEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEA 245 (248)
T ss_dssp HHHTC----CCCCCH-HHHHHTTHHHHHHHHHHHHHHHHCC-CCCSSCHHHHHHHHHHH
T ss_pred HHHHhCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHhc
Confidence 9999998 899999999999999999999999999999999999999999999975
No 3
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=100.00 E-value=1.7e-38 Score=289.43 Aligned_cols=211 Identities=18% Similarity=0.200 Sum_probs=182.7
Q ss_pred cccCCCCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceE
Q psy6602 69 FLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148 (367)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l 148 (367)
++.++++..+++ ....++++++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.||+++..+...+
T Consensus 22 ~~~~~~~~~~~~---~~~~~~~~~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~l 98 (243)
T 3ltx_A 22 LESHHNHGQPPT---KVHLLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIEHGGKSL 98 (243)
T ss_dssp CCCCCCTTSCCC---HHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSEE
T ss_pred hhccccCCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeE
Confidence 334444334443 34458899999999999999999999999999999999999999999999999999988777656
Q ss_pred ecCCcc-ccCCCCCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q psy6602 149 INCEKA-RERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVR 227 (367)
Q Consensus 149 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~ 227 (367)
+++++. +........+..+.++.+.+++.+|++|++|++||+|||||+||+||++|+++..+|+++|++|..+|.+||.
T Consensus 99 ~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~ 178 (243)
T 3ltx_A 99 AFAPDLVLDRSSWSTVEMTEIFEQVAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNMQQSLLDAIVDTAQ 178 (243)
T ss_dssp EEETTEEEEHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCCSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCcccchhhhcccCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 555543 2222111224567778889999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcchHHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCC
Q psy6602 228 GRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282 (367)
Q Consensus 228 ~~~~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s 282 (367)
.+|++++.||++||++++.||+++..+.|++++.+.++..++++++.|||+....
T Consensus 179 ~~~p~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~~ 233 (243)
T 3ltx_A 179 KYHPDNVRHVPAVLLLLTHIRQAGERGIAFFQRLKSEGVVTFCDLLKEMLDAQDF 233 (243)
T ss_dssp HHSTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHC--
T ss_pred HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHhCccc
Confidence 9999999999999999999999999999999999999999999999999997664
No 4
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=100.00 E-value=2.5e-39 Score=296.74 Aligned_cols=190 Identities=25% Similarity=0.365 Sum_probs=172.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccchH
Q psy6602 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVN 166 (367)
Q Consensus 87 ~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 166 (367)
.+..+++++++.++.+|+|||++|||.+|+.+||++|||+||+|++++++||++++..+..++.++....+... ..+..
T Consensus 53 ~~~~~~~l~~~~i~~iV~wAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~~~l~~~~~~~~~~~~~-~~~~~ 131 (257)
T 3v3e_B 53 DVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQC-ARGFG 131 (257)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBGGGTEEECTTSBEEEHHHH-HHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEeCCCccccHHHH-HhhhH
Confidence 47889999999999999999999999999999999999999999999999999998777777777665554332 23455
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhh--CCCcchHHHHHHHhh
Q psy6602 167 NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGR--YSRQPTRFGRLLLML 244 (367)
Q Consensus 167 ~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~--~~~~~~Rf~~LL~~l 244 (367)
+.++.+.+|+.+|++|++|++||+|||||+||+ |++|+.+..+|+++|+++..+|++|+..+ +++++.||++||++|
T Consensus 132 ~~~~~l~~~~~~l~~L~ld~~E~a~LkAivLfs-d~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf~kLL~~L 210 (257)
T 3v3e_B 132 DWIDSILAFSRSLHSLLVDVPAFACLSALVLIT-DRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKL 210 (257)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSS-CCTTCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHHHHHHHHH
Confidence 677899999999999999999999999999998 99999999999999999999999999754 578999999999999
Q ss_pred hHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHc
Q psy6602 245 PSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 278 (367)
Q Consensus 245 ~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~ 278 (367)
+.||+++..+.|.+++.+..+..++++|+.|||.
T Consensus 211 p~LR~l~~~~~e~l~~~k~~~~~~~~~Ll~Emf~ 244 (257)
T 3v3e_B 211 PELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFM 244 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHH
Confidence 9999999999999999999999999999999995
No 5
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=100.00 E-value=3.9e-38 Score=290.61 Aligned_cols=217 Identities=26% Similarity=0.402 Sum_probs=182.2
Q ss_pred cccccCCCCCCCCChh-hhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccC--
Q psy6602 67 SMFLATHQPPPHPGLL-QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPW-- 143 (367)
Q Consensus 67 ~~~~~~~~~~~~~~~~-~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~-- 143 (367)
..+++++++..+++.. .....++++++++.+.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.||+++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~w~el~lL~~a~~s~~~~~ 101 (264)
T 1g2n_A 22 SEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLT 101 (264)
T ss_dssp CCCCCSBCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred CccccccccCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCChhcCCHHHHHHHHHHhhHHHHHHHHHHHcccccc
Confidence 3445555555555443 2235689999999999999999999999999999999999999999999999999999876
Q ss_pred --CCc--------------eEecCCccccCCCCCccchHHHH-HHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCC
Q psy6602 144 --DLS--------------LLINCEKARERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV 206 (367)
Q Consensus 144 --~~~--------------~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~ 206 (367)
.+. .++.++..+.+......+..+.+ +.+.+++.+|++|++|++||+|||||+||+||++|++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~ 181 (264)
T 1g2n_A 102 EERDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLK 181 (264)
T ss_dssp CC----------CCCCCCEEEEETTEEEEHHHHHHHTCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTCS
T ss_pred ccccccccccccccccccceeecCCcccCchhhhhccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCc
Confidence 443 33333333332222222445555 6788999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCC
Q psy6602 207 DAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSY 283 (367)
Q Consensus 207 ~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~ 283 (367)
+...|+++|++|..+|.+||..+|++++.||++|+++++.||+++..+.|.+++.+.++..++++++.||++....+
T Consensus 182 ~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~~~ 258 (264)
T 1g2n_A 182 NRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVADTSIAGYIRDALRNHAPP 258 (264)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHTHHHHHHHHHHHHHHHHHHTTCBCTTTHHHHHHHHHTCCC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876643
No 6
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=100.00 E-value=2.1e-38 Score=287.69 Aligned_cols=193 Identities=21% Similarity=0.283 Sum_probs=172.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccch
Q psy6602 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRV 165 (367)
Q Consensus 86 ~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 165 (367)
..++++++++++.++.+|+|||++|||.+|+.+||++|||++|+|+++++.||+++..++..++.++..+.+......|.
T Consensus 44 ~~~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~l~~~~g~~~~~~~~~~~g~ 123 (236)
T 1fcy_A 44 GLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGF 123 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEECTTCBEEEHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhccCCCeEEeCCCceecHHHHHHcCc
Confidence 34889999999999999999999999999999999999999999999999999999865554444443333322112234
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhhh
Q psy6602 166 NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLP 245 (367)
Q Consensus 166 ~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~ 245 (367)
.+.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+||+++.||++|+++++
T Consensus 124 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~ 203 (236)
T 1fcy_A 124 GPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKIT 203 (236)
T ss_dssp GGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHhH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhhhhHHHHHHhhhccCCchhHhHHHHHHc
Q psy6602 246 SLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 278 (367)
Q Consensus 246 ~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~ 278 (367)
.||+++..+.|.+++.+..+..++++++.||++
T Consensus 204 ~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~ 236 (236)
T 1fcy_A 204 DLRGISTKGAERAITLKMEIPGPMPPLIREMLE 236 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccCCCCccHHHHHHhC
Confidence 999999999999999999999999999999985
No 7
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=100.00 E-value=3.1e-37 Score=281.02 Aligned_cols=195 Identities=26% Similarity=0.358 Sum_probs=173.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccC--CCceEecCCccccCCCCCcc
Q psy6602 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPW--DLSLLINCEKARERLPPDDV 163 (367)
Q Consensus 86 ~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~--~~~~l~~~~~~~~~~~~~~~ 163 (367)
..++++++++++.++.+|+|||++|||.+|+.+||++|||++|+|+++|+.||+++.. .+..++.++..+........
T Consensus 46 ~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~ 125 (243)
T 2iz2_A 46 DLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLGLL 125 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhHhhCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeecCCcccChhhHhhc
Confidence 4588999999999999999999999999999999999999999999999999999753 33334444433444333333
Q ss_pred chHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHh
Q psy6602 164 RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLM 243 (367)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~ 243 (367)
+..+..+.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+|++++.||++|+++
T Consensus 126 ~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~ 205 (243)
T 2iz2_A 126 GVPQLGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRGLVNI 205 (243)
T ss_dssp STTSSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHTH
T ss_pred chHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH
Confidence 34455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 244 LPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 244 l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
++.+|+++..+.|.+++.+.++..++++++.||++..
T Consensus 206 L~~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~ 242 (243)
T 2iz2_A 206 LPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHAK 242 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999864
No 8
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=100.00 E-value=1.6e-37 Score=283.98 Aligned_cols=213 Identities=20% Similarity=0.307 Sum_probs=181.4
Q ss_pred CcccccCCCCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy6602 66 PSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDL 145 (367)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~ 145 (367)
|..+++++++..|++.. ..++.+++++++.++.+|+|||++|||.+|+.+||++|||++|+|+++|+.||+++...+
T Consensus 18 p~~~~~~~~~~~~~~~~---~~~~~l~~~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~ 94 (248)
T 1xpc_A 18 PPILYSEYDPTRPFSEA---SMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPG 94 (248)
T ss_dssp CCCCCCCSCTTSCSTTS---CHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred CCccccCCCCCCCCchh---HHHHHHHHHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHhHHHHHHHHHHHhccccC
Confidence 34455666655555432 347889999999999999999999999999999999999999999999999999998765
Q ss_pred ceEecCCccccCCC-CCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCC--------CCChhHHHHHHH
Q psy6602 146 SLLINCEKARERLP-PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPG--------LVDAQPVEMLQD 216 (367)
Q Consensus 146 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~--------L~~~~~v~~~q~ 216 (367)
..++.++..+.+.. ....+..+.++.+.+++.+|++|++|++||+|||||+||+||++| +.++..|+++|+
T Consensus 95 ~l~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~~ls~~~~~gl~~~~~v~~lq~ 174 (248)
T 1xpc_A 95 KLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLD 174 (248)
T ss_dssp EEEEETTEEEEHHHHTTSTTHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred ceeecCCceeCccchhhhccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCcccccccccccccccHHHHHHHHH
Confidence 55555554444322 122346677788999999999999999999999999999999954 555789999999
Q ss_pred HHHHHHHHHHHhhC---CCcchHHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccC
Q psy6602 217 QAQCILGDYVRGRY---SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281 (367)
Q Consensus 217 ~~~~~L~~y~~~~~---~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~ 281 (367)
+|..+|.+||..++ ++++.||++|+++++.||+++..+.|.+++.+.++..++++++.||++...
T Consensus 175 ~~~~aL~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~ 242 (248)
T 1xpc_A 175 KITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHR 242 (248)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCc
Confidence 99999999999875 477899999999999999999999999999999999999999999998654
No 9
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=100.00 E-value=1.4e-37 Score=287.11 Aligned_cols=201 Identities=19% Similarity=0.248 Sum_probs=176.7
Q ss_pred ChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCC
Q psy6602 80 GLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLP 159 (367)
Q Consensus 80 ~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~ 159 (367)
........|.++++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.||+++..++..++.++..+.+..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~l~~~~g~~~~~~~ 143 (267)
T 3ilz_A 64 GDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQ 143 (267)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCBTTTTBEEETTTEEECHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhCCHhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCCeeecHHH
Confidence 33344556899999999999999999999999999999999999999999999999999998766655555544333322
Q ss_pred CCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHH
Q psy6602 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGR 239 (367)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~ 239 (367)
....+....++.+.+++.+|++|++|++||+|||||+||+||++|+++..+|+++|++|..+|.+||..+|++++.||++
T Consensus 144 ~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~ 223 (267)
T 3ilz_A 144 LKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPK 223 (267)
T ss_dssp HHHTTTTHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCCCSSSCSCHHHHHHHHHHHHHHHHHHHHHHTCSSTTHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 11223456678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHhHhhhhhHHHHHHhhhccCCchh-HhHHHHHHccc
Q psy6602 240 LLLMLPSLRAVRQSTIERLFFKETIGDIPI-QRLLGDMYTME 280 (367)
Q Consensus 240 LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~-~~Ll~eml~~~ 280 (367)
||++++.||+++..+.|.+++.+..+..++ ++|+.|||+..
T Consensus 224 LL~~Lp~Lr~l~~~~~e~l~~~k~~~~~~~~~~Ll~Em~~~~ 265 (267)
T 3ilz_A 224 LLMKVTDLRMIGAXHASRFLHMKVEXPTELFPPLFLEVFEDQ 265 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCSSCGGGSCHHHHHHTCCS
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhcCCccCCCcHHHHHhcCC
Confidence 999999999999999999999999998887 99999999853
No 10
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=100.00 E-value=5e-37 Score=279.36 Aligned_cols=204 Identities=21% Similarity=0.282 Sum_probs=177.1
Q ss_pred CCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCc
Q psy6602 74 QPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK 153 (367)
Q Consensus 74 ~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~ 153 (367)
++..|++... .+.++++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.||+++..++..++.++.
T Consensus 24 ~~~~~~~~~~---~~~~~~~~a~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~ 100 (240)
T 3oll_A 24 RPSAPFTEAS---MMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFAPDL 100 (240)
T ss_dssp CCSSCCCHHH---HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEETBE
T ss_pred CCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCeeEecCCc
Confidence 4455665443 3788999999999999999999999999999999999999999999999999999876555555544
Q ss_pred cccCCCCC-ccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCC-------hhHHHHHHHHHHHHHHHH
Q psy6602 154 ARERLPPD-DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD-------AQPVEMLQDQAQCILGDY 225 (367)
Q Consensus 154 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~-------~~~v~~~q~~~~~~L~~y 225 (367)
...+.... ..+..+.++.+.+++.+|++|++|++||+|||||+||+||++|+++ +.+|+.+|++|.++|.+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y 180 (240)
T 3oll_A 101 VLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWV 180 (240)
T ss_dssp EEEGGGGGGSTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCSCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 44433221 2346677788999999999999999999999999999999999865 568899999999999999
Q ss_pred HHhhC---CCcchHHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 226 VRGRY---SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 226 ~~~~~---~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
|..++ ++++.||++|+++++.||+++..+.|.+++.+.++..++++++.|||+..
T Consensus 181 ~~~~~~~~~~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~eml~~~ 238 (240)
T 3oll_A 181 IAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAH 238 (240)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHC
T ss_pred HhccCCCCcchhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcc
Confidence 98764 57899999999999999999999999999999999999999999999854
No 11
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=283.65 Aligned_cols=196 Identities=32% Similarity=0.552 Sum_probs=172.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccc-----cCCC--
Q psy6602 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKAR-----ERLP-- 159 (367)
Q Consensus 87 ~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~-----~~~~-- 159 (367)
+++++|+++.+.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.||++...+...++.+++.. .+..
T Consensus 35 ~~~~~~e~a~~~L~~~VewaK~iP~F~~L~~~DQ~~LLk~~w~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (249)
T 3p0u_A 35 NVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLS 114 (249)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHTCTTTGGGCHHHHHHHHHTTHHHHHHHHHHHTTTSCCCCCCCCC-CC---CC-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCcchhhcccccccccccccccch
Confidence 466699999999999999999999999999999999999999999999999999877766666554322 1111
Q ss_pred -CCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHH
Q psy6602 160 -PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFG 238 (367)
Q Consensus 160 -~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~ 238 (367)
....+..+.++.+.+++.+|++|++|++||+|||||+||+||++|+++..+|+++|++|..+|.+||..+|++++.||+
T Consensus 115 ~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~ 194 (249)
T 3p0u_A 115 GDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSEDTYRLA 194 (249)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCSTTCCCSHHHHHHHHHHHHHHHHHHHHHTTTCSTHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 1122345667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCC
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s 282 (367)
+|+++++.||+++..+.|.+++.+.+|..++++++.+||++...
T Consensus 195 ~LL~~L~~Lr~i~~~~~e~l~f~~~~g~~~i~~Ll~eml~~~~~ 238 (249)
T 3p0u_A 195 RILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETA 238 (249)
T ss_dssp HHHTTHHHHHTSCHHHHHHHHCCSSHHHHCHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHeeeecccCCCCHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999997664
No 12
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=100.00 E-value=2.4e-37 Score=285.17 Aligned_cols=197 Identities=25% Similarity=0.372 Sum_probs=169.5
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecC----CccccCC
Q psy6602 83 QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC----EKARERL 158 (367)
Q Consensus 83 ~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~----~~~~~~~ 158 (367)
..+.+++++++++++.++.+|+|||++|||.+|+.+||++|||++|+|+++|++||+++..+...+..+ +...+..
T Consensus 44 v~l~~~~~l~e~a~~~L~~~V~wAK~iP~F~~L~~~DQv~LLk~~w~ElllL~~A~rs~~~~~~~~~~~~~~~~il~~~~ 123 (268)
T 3f5c_B 44 ITLKDPQVVCEAASAGLLKTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRR 123 (268)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC--------------
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHhccccccccchhhhhhhhhcccc
Confidence 345678999999999999999999999999999999999999999999999999999987665432211 1111110
Q ss_pred C----------------------CCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHH
Q psy6602 159 P----------------------PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQD 216 (367)
Q Consensus 159 ~----------------------~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~ 216 (367)
. .......+.++.+.+++.+|++|++|++||+|||||+||+||++|+++..+|+++|+
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~ 203 (268)
T 3f5c_B 124 QETEGPEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQW 203 (268)
T ss_dssp -------------------------CCCCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhccccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH
Confidence 0 000112356788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcc
Q psy6602 217 QAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTM 279 (367)
Q Consensus 217 ~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~ 279 (367)
+|..+|.+||..+|++++.||++|+++++.||+++..+.|.+++.+.++..++++++.||++.
T Consensus 204 ~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~LR~i~~~~~e~l~~~k~~g~~~i~~Ll~Eml~a 266 (268)
T 3f5c_B 204 RTQQILTEHIRMMQREYQIRSAELNSALFLLRFINSDVVTELFFRPIIGAVSMDDMMLEMLCA 266 (268)
T ss_dssp HHHHHHHHHHHHHSSCSSHHHHHHHHHHHHHTTSCSSHHHHHHTHHHHCSCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999975
No 13
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=100.00 E-value=2.6e-37 Score=283.75 Aligned_cols=200 Identities=30% Similarity=0.435 Sum_probs=174.5
Q ss_pred hhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCC-CceEecCCcc-ccCC
Q psy6602 81 LLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD-LSLLINCEKA-RERL 158 (367)
Q Consensus 81 ~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~-~~~l~~~~~~-~~~~ 158 (367)
...+..++..+++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.||++.... .+.+++.++. +...
T Consensus 51 ~~~~~~~~~~l~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~rs~~~~~~~~l~~~~g~~~~~~ 130 (257)
T 3plz_A 51 KHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYS 130 (257)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCBTTEEECTTSCEEEHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCccChH
Confidence 3455677999999999999999999999999999999999999999999999999999987543 3444444443 2221
Q ss_pred CC-Cccch--HHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcch
Q psy6602 159 PP-DDVRV--NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 235 (367)
Q Consensus 159 ~~-~~~~~--~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~ 235 (367)
.. ...+. .+.++.+.+++.+|++|++|++||+|||||+||+||++|+++..+|+++|++|..+|.+||..+|++++.
T Consensus 131 ~~~~~~g~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~ 210 (257)
T 3plz_A 131 IIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTE 210 (257)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTCCSCTTHHHHHHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 10 01122 5667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 236 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 236 Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
||++|+++++.||+++..+.|.+++.+.++..++++++.||++..
T Consensus 211 Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~i~~Ll~Eml~~k 255 (257)
T 3plz_A 211 KFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAK 255 (257)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSCCCSHHHHHHTC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999864
No 14
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=280.58 Aligned_cols=199 Identities=41% Similarity=0.713 Sum_probs=171.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccC-C-CCCcc
Q psy6602 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARER-L-PPDDV 163 (367)
Q Consensus 86 ~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~-~-~~~~~ 163 (367)
.+++++++++.+.++.+|+|||++|||.+|+.+||++|||++|+|+++|+.||+++..+...++.+++.... . .....
T Consensus 37 ~~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~g~~~~~~~~~~~~ 116 (244)
T 3cjw_A 37 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVV 116 (244)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCC-----------------C
T ss_pred ccHHHHHHHHHHHHHHHHhHHHhCCChhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccchhhhH
Confidence 346679999999999999999999999999999999999999999999999999998777766666554321 1 11112
Q ss_pred chHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHh
Q psy6602 164 RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLM 243 (367)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~ 243 (367)
++.+.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+|++++.||++||++
T Consensus 117 ~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~LLl~ 196 (244)
T 3cjw_A 117 AFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLR 196 (244)
T ss_dssp CCSHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH
Confidence 23455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCC
Q psy6602 244 LPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYE 284 (367)
Q Consensus 244 l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d 284 (367)
|+.||+++..+.|.+++.+.++..++++++.||++...+.+
T Consensus 197 L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~~~~ 237 (244)
T 3cjw_A 197 LPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFN 237 (244)
T ss_dssp HHHHHHSCHHHHHHHHTHHHHTTCCGGGTHHHHHTCCCCCC
T ss_pred hHHHHhhhHHHHHHHHhhcccCCCcHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999766543
No 15
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=100.00 E-value=2.1e-37 Score=285.60 Aligned_cols=195 Identities=21% Similarity=0.297 Sum_probs=172.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccchH
Q psy6602 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVN 166 (367)
Q Consensus 87 ~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 166 (367)
.|.++++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.||+++..++..++.++..+.+......+..
T Consensus 69 ~~~~~~e~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~~g~~ 148 (266)
T 3kmr_A 69 LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFG 148 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEECTTSBEEEHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEecCCcccchHHHhhcchH
Confidence 48899999999999999999999999999999999999999999999999999987655444444433332221112344
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhhhH
Q psy6602 167 NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246 (367)
Q Consensus 167 ~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~ 246 (367)
+..+.+.+++.+|++|++|++||+|||||+||+||++|+++..+|+++|++|..+|.+||..+|++++.||++||.+++.
T Consensus 149 ~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~ 228 (266)
T 3kmr_A 149 PLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITD 228 (266)
T ss_dssp GGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHhHH
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccC
Q psy6602 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281 (367)
Q Consensus 247 Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~ 281 (367)
||+++..+.|.+++.+.++..++++++.|||+...
T Consensus 229 Lr~i~~~~~e~l~~~k~~~~~~~~~Ll~Eml~~~~ 263 (266)
T 3kmr_A 229 LRSISAKGAERVITLKMEIPGSMPPLIQEMLENSE 263 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCC
Confidence 99999999999999999999999999999998643
No 16
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=100.00 E-value=5.2e-37 Score=283.39 Aligned_cols=209 Identities=21% Similarity=0.272 Sum_probs=177.3
Q ss_pred cCCCCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEec
Q psy6602 71 ATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150 (367)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~ 150 (367)
+++++..|++.... +.++++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.|||++...+..++.
T Consensus 19 ~~~~~~~~~~~~~~---~~~l~e~a~~~l~~~VewAK~lp~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~ 95 (268)
T 1yye_A 19 LISRPSAPFTEASM---MMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFA 95 (268)
T ss_dssp CCCCCSCCCCHHHH---HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEE
T ss_pred ccCCCCCCCchhHH---HHHHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEec
Confidence 44555566654332 778999999999999999999999999999999999999999999999999999877555555
Q ss_pred CCccccCCCCC-ccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCC-------hhHHHHHHHHHHHHH
Q psy6602 151 CEKARERLPPD-DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD-------AQPVEMLQDQAQCIL 222 (367)
Q Consensus 151 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~-------~~~v~~~q~~~~~~L 222 (367)
++..+.+.... ..+..+.++.+.+++.+|++|++|.+||+|||||+||+||++|+++ +.+|+++|++|..+|
T Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL 175 (268)
T 1yye_A 96 PDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDAL 175 (268)
T ss_dssp TTEEEEGGGGGGSTTHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCC----------CCHHHHHHHHHHHHHHH
T ss_pred CCcccChhhHhhhccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 55444443211 2346677788999999999999999999999999999999999864 789999999999999
Q ss_pred HHHHHhhC---CCcchHHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCC
Q psy6602 223 GDYVRGRY---SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282 (367)
Q Consensus 223 ~~y~~~~~---~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s 282 (367)
.+||..++ ++++.||++||++++.||+++..+.|.+++.+.++..++++++.|||+....
T Consensus 176 ~~y~~~~~~~~~~~~~Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~~ 238 (268)
T 1yye_A 176 VWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHVL 238 (268)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCccc
Confidence 99999874 5788999999999999999999999999999999999999999999987664
No 17
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=100.00 E-value=4.6e-37 Score=278.74 Aligned_cols=196 Identities=29% Similarity=0.586 Sum_probs=173.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccch
Q psy6602 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRV 165 (367)
Q Consensus 86 ~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 165 (367)
..+.++++++.+.++.+|+|||++|||.+|+.+||++|||++|+|+++++.|||++...+..++.++..+.+......+.
T Consensus 37 ~~~~~~~~~~~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~ 116 (235)
T 2nxx_A 37 TTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVNKSTAHAVGV 116 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSSSEECSSSCEECSSSCSSSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHhcccCCCceEecCCcccccchhhhhch
Confidence 45889999999999999999999999999999999999999999999999999999876665555554444443222223
Q ss_pred HHHH-HHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhh
Q psy6602 166 NNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLML 244 (367)
Q Consensus 166 ~~~~-~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l 244 (367)
.+.+ +.+.+++.+|++|++|++||+|||||+||+||++|++++..|+++|++|..+|.+||..+|++++.||++|+.++
T Consensus 117 ~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L 196 (235)
T 2nxx_A 117 GNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRL 196 (235)
T ss_dssp SSSHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHh
Confidence 3333 346789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccC
Q psy6602 245 PSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281 (367)
Q Consensus 245 ~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~ 281 (367)
+.||+++..+.|.+++.+.++..++++++.||++...
T Consensus 197 ~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~eml~~~~ 233 (235)
T 2nxx_A 197 PALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEGTT 233 (235)
T ss_dssp HHHHHHHHTCCSCTTTTSSSSCCCHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999998654
No 18
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=100.00 E-value=3e-37 Score=287.26 Aligned_cols=201 Identities=22% Similarity=0.226 Sum_probs=174.2
Q ss_pred CChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCC
Q psy6602 79 PGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL 158 (367)
Q Consensus 79 ~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~ 158 (367)
+........+.++++++.+.++.+|+|||+||||.+|+.+||++|||++|+|+++|+.|+++....+...+.++..+.+.
T Consensus 81 ~~~~~~~~~~~~l~e~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~~~~~g~~~~~~ 160 (283)
T 3ipq_A 81 HSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNRE 160 (283)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEEETTTEEECHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEeCCCceecHH
Confidence 33444566789999999999999999999999999999999999999999999999999998765555555554444332
Q ss_pred CCCccch-HHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHH
Q psy6602 159 PPDDVRV-NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRF 237 (367)
Q Consensus 159 ~~~~~~~-~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf 237 (367)
.....+. .+.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+|++++.||
T Consensus 161 ~~~~~g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf 240 (283)
T 3ipq_A 161 DFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMF 240 (283)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCChhhHH
Confidence 2111122 356788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 238 ~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
++||++|+.||+++..+.|.+++.+..+ .++++|+.|||+..
T Consensus 241 ~~LL~~Lp~Lr~l~~~~~e~l~~~k~~~-~~~~~Ll~Em~~~~ 282 (283)
T 3ipq_A 241 PRMLMKLVSLRTLSSVHSEQVFALRLQD-KKLPPLLSEIWDVH 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCChHHHHHhcCC
Confidence 9999999999999999999999999886 48999999999864
No 19
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=100.00 E-value=5.1e-37 Score=283.73 Aligned_cols=191 Identities=19% Similarity=0.210 Sum_probs=168.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCC--CCCccc
Q psy6602 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERL--PPDDVR 164 (367)
Q Consensus 87 ~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~--~~~~~~ 164 (367)
-|.++...++..++.+|+|||++|||.+|+.+||++|||++|+|++++++|++++.. +..+.++++..... .....+
T Consensus 77 ~~~~~~~~~~~~v~~iVewAK~iPgF~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 155 (273)
T 3vi8_A 77 IFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKD-GMLVAYGNGFITREFLKSLRKP 155 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGEETT-EEEETTTTEEEEHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeeeeCCCccchHHHHHhhhh
Confidence 388999999999999999999999999999999999999999999999999988753 33344443332211 112234
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhh
Q psy6602 165 VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLML 244 (367)
Q Consensus 165 ~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l 244 (367)
..+.++.+.+|+.+|++|++|++||+|||||+||+||++|+.++..|+++|++|..+|.+|+..+||+++.||++|+.+|
T Consensus 156 ~~~~~~~l~~~~~~~~~L~ld~~E~alLkAivLf~pd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~~rF~kLL~~L 235 (273)
T 3vi8_A 156 FCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKM 235 (273)
T ss_dssp THHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhhhhhHHHHHHh-hhccCCchhHhHHHHHHc
Q psy6602 245 PSLRAVRQSTIERLFF-KETIGDIPIQRLLGDMYT 278 (367)
Q Consensus 245 ~~Lr~l~~~~~e~l~~-~~~~~~~~~~~Ll~eml~ 278 (367)
+.||+++..+.|.++. +...+..++++|+.|||.
T Consensus 236 p~LR~l~~~~~e~l~~~k~~~~~~~~~~Ll~Emf~ 270 (273)
T 3vi8_A 236 ADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIYR 270 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCccHHHHHHHH
Confidence 9999999999999985 445788999999999996
No 20
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=100.00 E-value=7.9e-37 Score=279.03 Aligned_cols=196 Identities=24% Similarity=0.342 Sum_probs=172.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccC-CCceEecCCc-cccCCC---
Q psy6602 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPW-DLSLLINCEK-ARERLP--- 159 (367)
Q Consensus 85 ~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~-~~~~l~~~~~-~~~~~~--- 159 (367)
..+++++++++.+.++.+|+|||++|||.+|+.+||++|||++|+|+++|+.|||++.. ..+.++..++ .+....
T Consensus 44 ~~~~~~l~~~a~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~ 123 (246)
T 1ymt_A 44 PAPFSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAV 123 (246)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTEEECTTSCEEEHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEecCCCccchhhhhh
Confidence 35689999999999999999999999999999999999999999999999999999865 2344444333 332211
Q ss_pred CCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHH
Q psy6602 160 PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGR 239 (367)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~ 239 (367)
.......+.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+|++++.||++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~ 203 (246)
T 1ymt_A 124 QAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGDKFQQ 203 (246)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCGGGSSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 01111235668889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 240 LLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 240 LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
|+++++.||+++..+.|.+++.+.++..++++++.|||+..
T Consensus 204 LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~ 244 (246)
T 1ymt_A 204 LLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAK 244 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSCTTCHHHHHHHC-
T ss_pred HHHHhHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999854
No 21
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=100.00 E-value=8e-37 Score=285.69 Aligned_cols=213 Identities=20% Similarity=0.318 Sum_probs=179.5
Q ss_pred CcccccCCCCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy6602 66 PSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDL 145 (367)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~ 145 (367)
|..++.++++..+++... .+..+++++.+.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.||+++...+
T Consensus 27 p~~~~~~~~~~~~~~~~~---~~~~l~e~a~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~ 103 (298)
T 2ocf_A 27 PPILYSEYDPTRPFSEAS---MMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPG 103 (298)
T ss_dssp CCCBCCCCCSSSCCCHHH---HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred CCcccccCCCCCCCchHH---HHHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHHhhHHHHHHHHHHHhcccCC
Confidence 344566666656655433 36789999999999999999999999999999999999999999999999999998765
Q ss_pred ceEecCCccccCCC-CCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCC--------CCCCChhHHHHHHH
Q psy6602 146 SLLINCEKARERLP-PDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPET--------PGLVDAQPVEMLQD 216 (367)
Q Consensus 146 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~--------~~L~~~~~v~~~q~ 216 (367)
..++.++..+.+.. ....++.+.++.+.+++.+|++|++|.+||+|||||+||+||+ +|+.++.+|+++|+
T Consensus 104 ~l~~~~g~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ld~~Ey~lLkAIvLfnpd~~~LS~~~~~gL~~~~~ve~lqe 183 (298)
T 2ocf_A 104 KLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLD 183 (298)
T ss_dssp EEEEETTEEEEHHHHTTSTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCC-----------CHHHHHHHH
T ss_pred ceeecCCceechhhhhhhhhHHHHHHHHHHHHHhHhhhCcCHHHHHHHHHHHHcCCCccccccccccccccHHHHHHHHH
Confidence 55555554443322 1223466777888999999999999999999999999999999 77888999999999
Q ss_pred HHHHHHHHHHHhhC---CCcchHHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccC
Q psy6602 217 QAQCILGDYVRGRY---SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281 (367)
Q Consensus 217 ~~~~~L~~y~~~~~---~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~ 281 (367)
+|..+|.+||..++ ++++.||++||++++.||+++..+.|.+++.+.++..++++|+.|||+...
T Consensus 184 ~~~~aL~~y~~~~~~~~~~~~~RF~~LLl~Lp~Lr~i~~~~~e~l~~~kl~g~~~i~~Ll~Eml~~~~ 251 (298)
T 2ocf_A 184 KITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHR 251 (298)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHcCCC
Confidence 99999999999874 477899999999999999999999999999999999999999999999765
No 22
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=100.00 E-value=7.8e-37 Score=278.62 Aligned_cols=192 Identities=16% Similarity=0.226 Sum_probs=173.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccc
Q psy6602 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVR 164 (367)
Q Consensus 85 ~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~ 164 (367)
...+.++++.+++.++.+|+|||++|||.+|+.+||++|||++|+|+++++.||+++..++..++ ++..+.+......+
T Consensus 49 ~~~~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~~~~-~g~~~~~~~~~~~~ 127 (244)
T 1nq7_A 49 EALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLF-EGKYGGMQMFKALG 127 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHGGGEETTTTEEEE-TTEEEEGGGGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEeE-CCEEecHHHHhhcC
Confidence 34488899999999999999999999999999999999999999999999999999876666666 55444444333345
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhh
Q psy6602 165 VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLML 244 (367)
Q Consensus 165 ~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l 244 (367)
..+.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+|++++ ||++|++++
T Consensus 128 ~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~-Rf~~LL~~L 206 (244)
T 1nq7_A 128 SDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDE-TLAKLIAKI 206 (244)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCSCTT-HHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-HHHHHHHHH
Confidence 6778889999999999999999999999999999999999999999999999999999999999999888 999999999
Q ss_pred hHhHhhhhhHHHHHHhhhccCCc----hhHhHHHHHHc
Q psy6602 245 PSLRAVRQSTIERLFFKETIGDI----PIQRLLGDMYT 278 (367)
Q Consensus 245 ~~Lr~l~~~~~e~l~~~~~~~~~----~~~~Ll~eml~ 278 (367)
+.||+++..+.|.+++.+..+.. ++++|+.|||+
T Consensus 207 ~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~~~Ll~Em~~ 244 (244)
T 1nq7_A 207 PTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFN 244 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHTSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccccCCCChHHHHhhC
Confidence 99999999999999999988765 78999999984
No 23
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=100.00 E-value=7e-37 Score=287.40 Aligned_cols=196 Identities=19% Similarity=0.278 Sum_probs=174.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccchH
Q psy6602 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVN 166 (367)
Q Consensus 87 ~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 166 (367)
.++++++++.+.++.+|+|||+||+|.+|+.+||++|||++|+|+++|+.||+++...+..++.++..+.+......++.
T Consensus 72 ~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~~~l~~~~g~~~~~~~~~~~g~~ 151 (303)
T 1xdk_B 72 LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFG 151 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTCBEEEHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccccCCHHHHHHHHHhhHHHHHHHHHHHHhcccCCeEEecCCceecHHHHhhcCcH
Confidence 47899999999999999999999999999999999999999999999999999998655444444433332221112344
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhhhH
Q psy6602 167 NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246 (367)
Q Consensus 167 ~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~ 246 (367)
+.++.+.+|+.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+|++++.||++||++|+.
T Consensus 152 ~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~ 231 (303)
T 1xdk_B 152 PLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITD 231 (303)
T ss_dssp GGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCSCSSSCSSHHHHHHHTHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCC
Q psy6602 247 LRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282 (367)
Q Consensus 247 Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s 282 (367)
||+++..+.|.+++.+..+..++++|+.|||+....
T Consensus 232 Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~~ 267 (303)
T 1xdk_B 232 LRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG 267 (303)
T ss_dssp HHHHHHHHHHHHHHHTTTCSSCCCHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCC
Confidence 999999999999999999999999999999987663
No 24
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=100.00 E-value=6.6e-37 Score=280.86 Aligned_cols=196 Identities=16% Similarity=0.238 Sum_probs=171.3
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCc-cccCCCCC
Q psy6602 83 QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEK-ARERLPPD 161 (367)
Q Consensus 83 ~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~-~~~~~~~~ 161 (367)
.....+.++++++++.++.+|+|||++|||.+|+.+||++|||++|+|+++|+.||++...++..++.+++ .+......
T Consensus 53 ~~~~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (254)
T 3b0t_A 53 SQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCGNQDYKYRVSDVT 132 (254)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEECSSGGGEECHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHhccCCCeEEecCCCeeeeHHHHH
Confidence 34556999999999999999999999999999999999999999999999999999987755554444323 23322111
Q ss_pred ccchH-HHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC--CcchHHH
Q psy6602 162 DVRVN-NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYS--RQPTRFG 238 (367)
Q Consensus 162 ~~~~~-~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~--~~~~Rf~ 238 (367)
..++. +.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+|+ +++.||+
T Consensus 133 ~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~ 212 (254)
T 3b0t_A 133 KAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYA 212 (254)
T ss_dssp TTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCTTTTTTHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHH
Confidence 12333 67788999999999999999999999999999999999999999999999999999999999998 8899999
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhc--cCCchhHhHHHHHHc
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKET--IGDIPIQRLLGDMYT 278 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~--~~~~~~~~Ll~eml~ 278 (367)
+|+++++.||+++..+.|.+++.+. .+..++++|+.|||+
T Consensus 213 ~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Em~~ 254 (254)
T 3b0t_A 213 KMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEVFG 254 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCCChHHHHhcC
Confidence 9999999999999999999999998 556778999999985
No 25
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=100.00 E-value=7.7e-37 Score=282.03 Aligned_cols=195 Identities=19% Similarity=0.241 Sum_probs=173.0
Q ss_pred hccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCcc
Q psy6602 84 ILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV 163 (367)
Q Consensus 84 ~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~ 163 (367)
....++++++++.+.++.+|+|||++|||.+|+.+||++|||++|+|+++|+.||+++..++..++.++..+.+......
T Consensus 66 ~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQi~LLk~~~~el~~L~~a~~~~~~~~~l~~~~g~~~~~~~~~~~ 145 (266)
T 2r40_D 66 SDMPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLFANNQAYTRDNYRKA 145 (266)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCceecHHHHhhc
Confidence 34568999999999999999999999999999999999999999999999999999887665555544444433222223
Q ss_pred chHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC---CCcchHHHHH
Q psy6602 164 RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRY---SRQPTRFGRL 240 (367)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~---~~~~~Rf~~L 240 (367)
+..+.++.+.+++.+|++|++|++||+|||||+||+ |++|+++...|+++|++|..+|.+||..+| ++++.||++|
T Consensus 146 g~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~n-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~~L 224 (266)
T 2r40_D 146 GMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVIFS-DRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKI 224 (266)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCHHHHHHHhhheeec-CCCCCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHH
Confidence 456778889999999999999999999999999999 999999999999999999999999999998 7889999999
Q ss_pred HHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 241 LLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 241 L~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
+++++.||+++..+.|.+++.+..+ .++++|+.|||+..
T Consensus 225 L~~L~~Lr~l~~~~~e~l~~~~~~~-~~~~~Ll~Em~~~~ 263 (266)
T 2r40_D 225 LGILTEIRTLGMQNSNMCISLKLKN-RKLPPFLEEIWDVA 263 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHhCCC
Confidence 9999999999999999999999887 58999999999854
No 26
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=100.00 E-value=7.9e-37 Score=280.96 Aligned_cols=215 Identities=17% Similarity=0.208 Sum_probs=179.7
Q ss_pred CCCcccccCCCCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy6602 64 HHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPW 143 (367)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~ 143 (367)
.+|..+++++++..|++.... ++++++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.||+++..
T Consensus 21 ~ep~~~~~~~~~~~~~~~~~~---~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~ 97 (260)
T 3vhv_A 21 IEPEIVYAGYDSSKPDTAENL---LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKH 97 (260)
T ss_dssp HCCCCCCCCCCTTSCCCHHHH---HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccCCCCCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhChHHhcCCHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 467778888888888776544 78899999999999999999999999999999999999999999999999998765
Q ss_pred CC--ceEecCCccccCCCCCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCC-CCCCCCChhHHHHHHHHHHH
Q psy6602 144 DL--SLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-ETPGLVDAQPVEMLQDQAQC 220 (367)
Q Consensus 144 ~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~p-d~~~L~~~~~v~~~q~~~~~ 220 (367)
.. ..++.++..+.+......+..+.++.+.+++.+|++|++|++||+|||||+||+| |++|+++...|+++|++|..
T Consensus 98 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnp~d~~gL~~~~~ve~lqe~~~~ 177 (260)
T 3vhv_A 98 TNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIK 177 (260)
T ss_dssp HTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHH
T ss_pred CCCCeEEecCCccccHHHhhcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCcCCCCCcCHHHHHHHHHHHHH
Confidence 33 3344444433332222234567788899999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhhCCCc---chHHHHHHHhhhHhHhhhhhHHHHHHhhhc---cCCchhHhHHHHHHcccC
Q psy6602 221 ILGDYVRGRYSRQ---PTRFGRLLLMLPSLRAVRQSTIERLFFKET---IGDIPIQRLLGDMYTMEK 281 (367)
Q Consensus 221 ~L~~y~~~~~~~~---~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~---~~~~~~~~Ll~eml~~~~ 281 (367)
+|.+||..++++. +.||++|+.+++.||+++..+.|.+++... .....+++++.|||+...
T Consensus 178 aL~~y~~~~~~~~~~~~~RF~~LL~~Lp~Lr~l~~~~~e~lff~~~~~~~~~~~~p~Ll~Ei~~~~~ 244 (260)
T 3vhv_A 178 ELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQL 244 (260)
T ss_dssp HHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHhccC
Confidence 9999999998755 799999999999999999999999986543 345679999999998653
No 27
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=100.00 E-value=1.5e-36 Score=279.08 Aligned_cols=214 Identities=21% Similarity=0.241 Sum_probs=184.3
Q ss_pred CCCcccccCCCCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy6602 64 HHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPW 143 (367)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~ 143 (367)
.+|..+++++++..|++.... +.++++++.+.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.|||++..
T Consensus 23 ~ep~~~~~~~~~~~~~~~~~~---~~~l~~~a~~~l~~~VewaK~iP~F~~L~~~DQ~~LLk~~~~el~iL~~a~rs~~~ 99 (261)
T 3mnp_A 23 IEPEVLYAGYDSSVPDSAWRI---MTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQ 99 (261)
T ss_dssp HSCCCCCCCCCTTSCCCHHHH---HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccccCCCCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 577788899888888876544 67899999999999999999999999999999999999999999999999998765
Q ss_pred CCc-eE-ecCCccccCCCCCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCC-CCCCCCChhHHHHHHHHHHH
Q psy6602 144 DLS-LL-INCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-ETPGLVDAQPVEMLQDQAQC 220 (367)
Q Consensus 144 ~~~-~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~p-d~~~L~~~~~v~~~q~~~~~ 220 (367)
.++ .+ +.++....+......++.+.++.+.+++.+|++|++|++||+|||||+||+| |++|+++..+|+++|++|..
T Consensus 100 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~np~d~~gL~~~~~ve~lq~~~~~ 179 (261)
T 3mnp_A 100 ASGNLLCFAPDLIINEQRMTLPCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQELFDEIRMTYIK 179 (261)
T ss_dssp HTTSSEEEETTEEECHHHHTSTTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHH
T ss_pred CCCCEEEecCCcccchhhhhhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCcCCCccHHHHHHHHHHHHH
Confidence 443 34 4444334333323345667788899999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhhCCC---cchHHHHHHHhhhHhHhhhhhHHHHHHhhhcc--CCchhHhHHHHHHccc
Q psy6602 221 ILGDYVRGRYSR---QPTRFGRLLLMLPSLRAVRQSTIERLFFKETI--GDIPIQRLLGDMYTME 280 (367)
Q Consensus 221 ~L~~y~~~~~~~---~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~--~~~~~~~Ll~eml~~~ 280 (367)
+|.+||..++++ ++.||++|+.+++.||+++..+.|.+++.... ....+++++.|+|+..
T Consensus 180 aL~~y~~~~~~~~~~~~~Rf~~LL~lL~~Lr~l~~~~~e~~f~~~~~~~~~~~~p~Ll~Ei~~~~ 244 (261)
T 3mnp_A 180 ELGKAIAKRGGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQTFLDKSMSIEFPEMLAEIITNQ 244 (261)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCCCCHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHhcc
Confidence 999999999884 58999999999999999999999998776554 4567899999999854
No 28
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=100.00 E-value=4.1e-36 Score=279.32 Aligned_cols=199 Identities=23% Similarity=0.381 Sum_probs=168.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCce-------EecCCccc--
Q psy6602 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSL-------LINCEKAR-- 155 (367)
Q Consensus 85 ~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~-------l~~~~~~~-- 155 (367)
.++++++++++.+.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.|||++...+.. +..+||.+
T Consensus 46 ~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~dGs~~~ 125 (279)
T 1hg4_A 46 KGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFER 125 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTC--------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccccCccccc
Confidence 346899999999999999999999999999999999999999999999999999988654431 23333321
Q ss_pred ------------------cCCCCCccchHHHH-HHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHH
Q psy6602 156 ------------------ERLPPDDVRVNNEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQD 216 (367)
Q Consensus 156 ------------------~~~~~~~~~~~~~~-~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~ 216 (367)
.+......+..... +.+.+++.+|++|++|++||+|||||+||+||++|++++..|+++|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~ 205 (279)
T 1hg4_A 126 RSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCRE 205 (279)
T ss_dssp -----CCCEEESSSSCEEEHHHHHHHTCHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHH
T ss_pred cccccccceeeecCCcccchhhHhhcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 11100011233343 34568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCC
Q psy6602 217 QAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSY 283 (367)
Q Consensus 217 ~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~ 283 (367)
+|..+|.+||..+|++++.||++||++++.||+++..+.|.+++.+.++..++++++.||++...++
T Consensus 206 ~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~~~ 272 (279)
T 1hg4_A 206 KVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEAPPPP 272 (279)
T ss_dssp HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCSSCHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999977653
No 29
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=100.00 E-value=2.5e-36 Score=279.31 Aligned_cols=209 Identities=21% Similarity=0.267 Sum_probs=171.4
Q ss_pred cCCCCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEec
Q psy6602 71 ATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150 (367)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~ 150 (367)
..+++..|++.. ..+.++++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.|||++...+..++.
T Consensus 47 ~~~~~~~~~~~~---~~~~~l~~~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~iL~~a~rs~~~~~~l~~~ 123 (271)
T 1l2j_A 47 LISRPSAPFTEA---SMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHPGKLIFA 123 (271)
T ss_dssp CCCC-----CHH---HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHTTHHHHHHHHHHHHTSSSTTEECSS
T ss_pred cccCCCCCCcch---hHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCeeeec
Confidence 444444554443 23788999999999999999999999999999999999999999999999999999876544444
Q ss_pred CCccccCCCCC-ccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCC-------hhHHHHHHHHHHHHH
Q psy6602 151 CEKARERLPPD-DVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD-------AQPVEMLQDQAQCIL 222 (367)
Q Consensus 151 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~-------~~~v~~~q~~~~~~L 222 (367)
++..+.+.... ..+..+.++.+.+++.+|++|++|++||+|||||+||+||++|+++ +.+|+.+|+.|.++|
T Consensus 124 ~g~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL 203 (271)
T 1l2j_A 124 PDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDAL 203 (271)
T ss_dssp SSCCEETGGGGGSTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----CCCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchhhhhhccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 44444433211 2356677788999999999999999999999999999999999976 357889999999999
Q ss_pred HHHHHhh---CCCcchHHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCC
Q psy6602 223 GDYVRGR---YSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 282 (367)
Q Consensus 223 ~~y~~~~---~~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s 282 (367)
..||..+ +++++.||++||++++.||+++..+.|.+++.+.++..++++|+.|||+....
T Consensus 204 ~~y~~~~~~~~~~~~~Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~~ 266 (271)
T 1l2j_A 204 VWVIAKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHVL 266 (271)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHcCCcc
Confidence 9999986 35788999999999999999999999999999999999999999999987653
No 30
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=100.00 E-value=5.8e-36 Score=276.59 Aligned_cols=194 Identities=16% Similarity=0.203 Sum_probs=170.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccc
Q psy6602 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVR 164 (367)
Q Consensus 85 ~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~ 164 (367)
...+..+++.+++.++.+|+|||++|||.+|+.+||++|||++|+|+++++.||++...++..++ ++...........+
T Consensus 64 ~~~~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~l~-~g~~~~~~~~~~~~ 142 (270)
T 1n83_A 64 EVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF-DGKYASPDVFKSLG 142 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGGEETTTTEEEE-TTEEECGGGGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEe-CCccccHHHHHhcC
Confidence 34588899999999999999999999999999999999999999999999999998876555554 44333332222335
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhh
Q psy6602 165 VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLML 244 (367)
Q Consensus 165 ~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l 244 (367)
..+.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+|+ ++.||++|++++
T Consensus 143 ~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~-~~~Rf~~LL~~L 221 (270)
T 1n83_A 143 CEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHR-EDGILTKLICKV 221 (270)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHHHHH
Confidence 6778899999999999999999999999999999999999999999999999999999999999987 689999999999
Q ss_pred hHhHhhhhhHHHHHHhhhccCC----chhHhHHHHHHccc
Q psy6602 245 PSLRAVRQSTIERLFFKETIGD----IPIQRLLGDMYTME 280 (367)
Q Consensus 245 ~~Lr~l~~~~~e~l~~~~~~~~----~~~~~Ll~eml~~~ 280 (367)
+.||+++..+.|.+++.+..+. .++++|+.|||+..
T Consensus 222 ~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~~~Ll~Em~~~~ 261 (270)
T 1n83_A 222 STLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSE 261 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCCcCHHHHHHhCCC
Confidence 9999999999999999998765 47899999999866
No 31
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=100.00 E-value=1.8e-36 Score=276.66 Aligned_cols=191 Identities=18% Similarity=0.284 Sum_probs=166.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccc
Q psy6602 85 LMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVR 164 (367)
Q Consensus 85 ~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~ 164 (367)
...++++++++++.++.+|+|||++|||.+|+.+||++|||++|+|+++++.||+++...+. ++.++..+........+
T Consensus 53 ~~~~~~~~e~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~ 131 (246)
T 1xvp_B 53 LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQN-FLCGPLRYTIEDGARVG 131 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGEETTTTE-EECSSCEECHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHHHHHhhHHHHHHHHHHHHhccccCe-EeeCCeeecHHHHHHcc
Confidence 34588999999999999999999999999999999999999999999999999998875443 45444333322111123
Q ss_pred hH-HHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhh--CCCcchHHHHHH
Q psy6602 165 VN-NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGR--YSRQPTRFGRLL 241 (367)
Q Consensus 165 ~~-~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~--~~~~~~Rf~~LL 241 (367)
.. +.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+ +++++.||++|+
T Consensus 132 ~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~rf~~LL 211 (246)
T 1xvp_B 132 FQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLL 211 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCSSSTTCSCHHHHHHHHHHHHHHHHHHHHTCSSCCSCSSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHH
Confidence 33 566888999999999999999999999999999999999999999999999999999999954 578899999999
Q ss_pred HhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHc
Q psy6602 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 278 (367)
Q Consensus 242 ~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~ 278 (367)
++++.||+++..+.|.+++. .+..++++|+.|||+
T Consensus 212 ~~L~~Lr~i~~~~~e~l~~~--~~~~~~~~Ll~Em~~ 246 (246)
T 1xvp_B 212 GLLAELRSINEAYGYQIQHI--QGLSAMMPLLQEICS 246 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--TTHHHHCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHH--hCCCCccHHHHHhcC
Confidence 99999999999999999985 577899999999985
No 32
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=100.00 E-value=3.6e-36 Score=282.98 Aligned_cols=195 Identities=17% Similarity=0.222 Sum_probs=174.6
Q ss_pred hccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCcc
Q psy6602 84 ILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV 163 (367)
Q Consensus 84 ~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~ 163 (367)
....+.++++++++.++.+|+|||+||+|.+|+.+||++|||++|+|+++|+.||+++..++..++ ++..+..... ..
T Consensus 118 ~~~~~~~l~e~~~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~~~~~l~-~~~~~~~~~~-~~ 195 (316)
T 1nrl_A 118 IFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC-GRLSYCLEDT-AG 195 (316)
T ss_dssp GGTTHHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEEEE-TTEEEEECCC-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEE-CCEeecHHHH-hc
Confidence 355699999999999999999999999999999999999999999999999999999876555544 4444444433 34
Q ss_pred chH-HHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC--CcchHHHHH
Q psy6602 164 RVN-NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRL 240 (367)
Q Consensus 164 ~~~-~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~--~~~~Rf~~L 240 (367)
++. +.++.+.+|+.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+|+ +++.||++|
T Consensus 196 g~~~~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~~~RF~kL 275 (316)
T 1nrl_A 196 GFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKI 275 (316)
T ss_dssp CHHHHTTSHHHHHHHHHHHTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCSGGGTTHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 455 56688899999999999999999999999999999999999999999999999999999999998 789999999
Q ss_pred HHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccC
Q psy6602 241 LLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281 (367)
Q Consensus 241 L~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~ 281 (367)
|++|+.||+++..+.|.+++.+..+. ++++|+.|||+...
T Consensus 276 Ll~Lp~LR~l~~~~~e~l~~~k~~~~-~i~~Ll~Eml~~~~ 315 (316)
T 1nrl_A 276 MAMLTELRSINAQHTQRLLRIQDIHP-FATPLMQELFGITG 315 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHcCCC
Confidence 99999999999999999999998876 89999999998643
No 33
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=100.00 E-value=5.1e-36 Score=281.04 Aligned_cols=198 Identities=16% Similarity=0.172 Sum_probs=171.1
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecC--CccccCCCC
Q psy6602 83 QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC--EKARERLPP 160 (367)
Q Consensus 83 ~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~--~~~~~~~~~ 160 (367)
.....+.++++++++.++.+|+|||+||||.+|+.+||++|||++|+|+++|+.|+++... +..++++ +..+.....
T Consensus 99 ~~~~~~~~l~e~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~-~~~~l~~~~~~~~~~~~~ 177 (302)
T 2hc4_A 99 SRLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQSFSLE-DMSWSCGGPDFKYCINDV 177 (302)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGTEETT-TTEEECSSSTTEECHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccC-CCeEEecCCCeeecHHHH
Confidence 3456689999999999999999999999999999999999999999999999999876554 4444444 233322211
Q ss_pred Cccch-HHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHH
Q psy6602 161 DDVRV-NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGR 239 (367)
Q Consensus 161 ~~~~~-~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~ 239 (367)
...+. .+.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+|++++.||++
T Consensus 178 ~~~g~~~~~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~RF~~ 257 (302)
T 2hc4_A 178 TKAGHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYAK 257 (302)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhHHHHH
Confidence 11223 56778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHhHhhhhhHHHHHHhhhccCC--chhHhHHHHHHcccC
Q psy6602 240 LLLMLPSLRAVRQSTIERLFFKETIGD--IPIQRLLGDMYTMEK 281 (367)
Q Consensus 240 LL~~l~~Lr~l~~~~~e~l~~~~~~~~--~~~~~Ll~eml~~~~ 281 (367)
||++++.||+++..+.|.+++.+..+. .++++|+.|||+...
T Consensus 258 LLl~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Em~~~~~ 301 (302)
T 2hc4_A 258 MIQKLADLRSLNEEHSKQYRSLSFQPEHSMQLTPLVLEVFGSEV 301 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccHHHHHHHcCCC
Confidence 999999999999999999999887643 678999999998653
No 34
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=100.00 E-value=2.8e-36 Score=281.75 Aligned_cols=198 Identities=18% Similarity=0.243 Sum_probs=172.5
Q ss_pred hccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecC-CccccCCCCCc
Q psy6602 84 ILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC-EKARERLPPDD 162 (367)
Q Consensus 84 ~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~-~~~~~~~~~~~ 162 (367)
....+.++++++++.++.+|+|||++|||.+|+.+||++|||++|+|+++|+.||++...++..++.+ +..+.......
T Consensus 57 ~~~~~~~l~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~ 136 (292)
T 2o4j_A 57 PLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDMSWDCGSQDYKYDVTDVSK 136 (292)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEETTTTEEECSSGGGEECHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcchhhccHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEecCCCeEEcHHHHHh
Confidence 34569999999999999999999999999999999999999999999999999998876555544443 33333221111
Q ss_pred cchH-HHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC--CcchHHHH
Q psy6602 163 VRVN-NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYS--RQPTRFGR 239 (367)
Q Consensus 163 ~~~~-~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~--~~~~Rf~~ 239 (367)
.++. +.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+|+ +++.||++
T Consensus 137 ~g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lq~~~~~aL~~y~~~~~p~~~~~~Rf~~ 216 (292)
T 2o4j_A 137 AGHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAK 216 (292)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSCTTTTTTHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHH
Confidence 2333 67788999999999999999999999999999999999999999999999999999999999998 88999999
Q ss_pred HHHhhhHhHhhhhhHHHHHHhhhcc--CCchhHhHHHHHHcccC
Q psy6602 240 LLLMLPSLRAVRQSTIERLFFKETI--GDIPIQRLLGDMYTMEK 281 (367)
Q Consensus 240 LL~~l~~Lr~l~~~~~e~l~~~~~~--~~~~~~~Ll~eml~~~~ 281 (367)
||++++.||+++..+.|.+++.+.+ +..++++|+.|||+...
T Consensus 217 LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Eml~~~~ 260 (292)
T 2o4j_A 217 MIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNEI 260 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSHHHHTTSCHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHcCCc
Confidence 9999999999999999999999884 46789999999998765
No 35
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=287.67 Aligned_cols=199 Identities=30% Similarity=0.442 Sum_probs=157.8
Q ss_pred hhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCC-CceEecCCc-cccCCC
Q psy6602 82 LQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD-LSLLINCEK-ARERLP 159 (367)
Q Consensus 82 ~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~-~~~l~~~~~-~~~~~~ 159 (367)
..+...+..+++++++.++.+|+|||+||+|.+|+.+||++|||++|+|+++|+.|||+.... .+.+++.++ .+....
T Consensus 147 ~~r~~~~~~l~e~a~~~L~~~VewAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~rs~~~~~~~~ll~~~G~~i~~~~ 226 (352)
T 3tx7_B 147 HEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSI 226 (352)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCBCTTCCBCCHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHcChhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCcccHHH
Confidence 345678999999999999999999999999999999999999999999999999999987543 234433433 322211
Q ss_pred CC-ccc--hHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchH
Q psy6602 160 PD-DVR--VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 236 (367)
Q Consensus 160 ~~-~~~--~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~R 236 (367)
.. ..+ ..+.++.+.+++.+|++|++|++||+|||||+||+||++|+++..+|+++|++|..+|.+||..+|++++.|
T Consensus 227 ~~~~~g~~~~~l~~~l~~l~~~l~~L~ld~~EyalLkAIvLfnpd~~gLs~~~~Ve~lQe~~~~aL~~y~~~~~p~~~~R 306 (352)
T 3tx7_B 227 IASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEK 306 (352)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSCC------CHHHHHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 00 111 256678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
|++||++|+.||+++..+.|.+++++.++..++++++.|||+..
T Consensus 307 F~kLLllLp~LR~ls~~~~e~L~~~kl~g~~~i~~LL~EMl~ak 350 (352)
T 3tx7_B 307 FGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAK 350 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCSSCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999864
No 36
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=100.00 E-value=5.6e-36 Score=275.54 Aligned_cols=211 Identities=19% Similarity=0.263 Sum_probs=176.8
Q ss_pred CCcccccCCCCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy6602 65 HPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144 (367)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~ 144 (367)
+|..+++++++..|++.... ++++++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++++.||+++...
T Consensus 23 ep~~~~~~~~~~~~~~~~~~---~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~ 99 (261)
T 1sqn_A 23 EPDVIYAGHDNTKPDTSSSL---LTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHV 99 (261)
T ss_dssp SCCCCCCCCCC--CCCHHHH---HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCCchhhH---HHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHhhHHHHHHHHHHHHhhhcC
Confidence 34456777776777765443 678999999999999999999999999999999999999999999999999998654
Q ss_pred Cc--eEecCCccccCCCCCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCC-CCCCCCChhHHHHHHHHHHHH
Q psy6602 145 LS--LLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-ETPGLVDAQPVEMLQDQAQCI 221 (367)
Q Consensus 145 ~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~p-d~~~L~~~~~v~~~q~~~~~~ 221 (367)
++ .++.++....+......++.+.++.+.+++.+|++|++|++||+|||||+||+| |++|+++..+|+++|++|..+
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~a 179 (261)
T 1sqn_A 100 SGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRE 179 (261)
T ss_dssp TTSSEEEETTEEECGGGCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEECTTCCTTHHHHHHHHHHHHHH
T ss_pred CCCeEEeCCCcccchHhhhhhhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHH
Confidence 43 345555555544433445667778899999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHhh---CCCcchHHHHHHHhhhHhHhhhhhHHHHHHhhhcc-----CCchhHhHHHHHHccc
Q psy6602 222 LGDYVRGR---YSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI-----GDIPIQRLLGDMYTME 280 (367)
Q Consensus 222 L~~y~~~~---~~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~-----~~~~~~~Ll~eml~~~ 280 (367)
|.+||..+ +++++.||++|+++++.+|+++... ..++.+.+ +..++++++.||+...
T Consensus 180 L~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~--~~~~~~~~~q~~~~~~~~~~Ll~Ei~~~~ 244 (261)
T 1sqn_A 180 LIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQL--HLYCLNTFIQSRALSVEFPEMMSEVIAAQ 244 (261)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCchHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHhcCCCCChHHHHHHHHhcC
Confidence 99999875 3578999999999999999999876 33344555 7889999999999854
No 37
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.1e-36 Score=273.01 Aligned_cols=200 Identities=20% Similarity=0.257 Sum_probs=153.4
Q ss_pred CCCcccccCCCCCCCCChh----hhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy6602 64 HHPSMFLATHQPPPHPGLL----QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQW 139 (367)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~ 139 (367)
.++..++++|+...|++.. .....|+.+++.+++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.|++
T Consensus 39 ~~~~~~~~~~~~~~p~~~~~~~~s~~~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~ 118 (245)
T 3n00_A 39 SSPGNFNANHASGSPYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASL 118 (245)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777877766665443 223558899999999999999999999999999999999999999999999999998
Q ss_pred hccCCCceEecCCccccCCCCCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHH
Q psy6602 140 SIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQ 219 (367)
Q Consensus 140 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~ 219 (367)
+....+..++.++..+........+..+.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|.
T Consensus 119 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~ 198 (245)
T 3n00_A 119 FNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLL 198 (245)
T ss_dssp CCSCC--------------CCGGGTTHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCTTCSSHHHHHHHHHHHH
T ss_pred hcCCCCeEEecCCCeecHHHHhhccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHH
Confidence 66544444444444444433334457788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcchHHHHHHHhhhHhHhhhhhHHHHHHhhhc
Q psy6602 220 CILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKET 263 (367)
Q Consensus 220 ~~L~~y~~~~~~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~ 263 (367)
.+|.+||..+|++++.||++||++|+.||+++..+.|.+++.+.
T Consensus 199 ~aL~~y~~~~~p~~~~RF~~LLl~Lp~LR~l~~~~~E~L~~~k~ 242 (245)
T 3n00_A 199 RALRALVLKNRPLETSRFTKLLLKLPDLRTLNNMHSEKLLSFRV 242 (245)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988764
No 38
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=100.00 E-value=3e-36 Score=274.50 Aligned_cols=193 Identities=24% Similarity=0.277 Sum_probs=170.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccch
Q psy6602 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRV 165 (367)
Q Consensus 86 ~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 165 (367)
..+.++++++++.++.+|+|||++|||.+|+.+||++|||++|+|+++++.||+++...+..++.++..+.+... ..+.
T Consensus 47 ~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~-~~~~ 125 (244)
T 1pdu_A 47 DKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHRTQC-LRSF 125 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHCCSSCSEEECTTSBEEEHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEeeCCeeecHHHH-HhHH
Confidence 448889999999999999999999999999999999999999999999999999986545444444433332211 1134
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC--CcchHHHHHHHh
Q psy6602 166 NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLM 243 (367)
Q Consensus 166 ~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~--~~~~Rf~~LL~~ 243 (367)
.+.++.+.+++.+|++|++|++||+|||||+||+ |++|+++...|+++|++|..+|.+||..+|+ +++.||++|+++
T Consensus 126 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfn-d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~ 204 (244)
T 1pdu_A 126 GEWLNDIMEFSRSLHNLEIDISAFACLCALTLIT-ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGK 204 (244)
T ss_dssp TTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHCHHHHTSTTHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHH
Confidence 4567788999999999999999999999999998 9999999999999999999999999998875 689999999999
Q ss_pred hhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 244 LPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 244 l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
++.||+++..+.|.+++.+.++..++++++.||+...
T Consensus 205 L~~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~ 241 (244)
T 1pdu_A 205 LPELRSLSVQGLQRIFYLKLEDLVPAPALIENMFVTT 241 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHhCC
Confidence 9999999999999999999999999999999999753
No 39
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=100.00 E-value=4.9e-36 Score=279.68 Aligned_cols=215 Identities=17% Similarity=0.208 Sum_probs=178.2
Q ss_pred CCCcccccCCCCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy6602 64 HHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPW 143 (367)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~ 143 (367)
.+|..+++++++..|++.... ++++++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.||+++..
T Consensus 55 ~eP~~~~~~~~~~~p~~~~~~---~~~l~e~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rS~~~ 131 (294)
T 3vhu_A 55 IEPEIVYAGYDSSKPDTAENL---LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKH 131 (294)
T ss_dssp HCCCCCCCCCCTTSCCCHHHH---HHHHHHHHHHHHHHHHHHHHTCTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCccccCCCCCCCCChHHH---HHHHHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 468888999888888776544 78899999999999999999999999999999999999999999999999998764
Q ss_pred CC--ceEecCCccccCCCCCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCC-CCCCCCChhHHHHHHHHHHH
Q psy6602 144 DL--SLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-ETPGLVDAQPVEMLQDQAQC 220 (367)
Q Consensus 144 ~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~p-d~~~L~~~~~v~~~q~~~~~ 220 (367)
.+ ..++.++..+.+......+..+.++.+.+++.+|++|++|++||+|||||+||+| |++|+++...|+++|++|..
T Consensus 132 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~~EyalLkAIvLfnp~d~~gL~~~~~Ve~lQe~~~~ 211 (294)
T 3vhu_A 132 TNSQFLYFAPDLVFNEEKMHQSAMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIK 211 (294)
T ss_dssp HTTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHH
T ss_pred CCCCeEEeCCCccccHHHhhcccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHH
Confidence 33 3344444433332211224567778899999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHhhCCCc---chHHHHHHHhhhHhHhhhhhHHHHHHhhhc---cCCchhHhHHHHHHcccC
Q psy6602 221 ILGDYVRGRYSRQ---PTRFGRLLLMLPSLRAVRQSTIERLFFKET---IGDIPIQRLLGDMYTMEK 281 (367)
Q Consensus 221 ~L~~y~~~~~~~~---~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~---~~~~~~~~Ll~eml~~~~ 281 (367)
+|.+||..++++. +.||++||.+++.||+++..+.|.+++... .....+++|+.|||+...
T Consensus 212 aL~~y~~~~~~~~~~~~~RF~~LL~lLp~Lr~l~~~~~e~lff~~~q~~~~~~~~p~Ll~Ei~~~~~ 278 (294)
T 3vhu_A 212 ELRKMVTKCPNNSGQSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQL 278 (294)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCHHHHHHHcCCC
Confidence 9999999887654 789999999999999999999999886443 345668999999998543
No 40
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=100.00 E-value=8.6e-36 Score=263.58 Aligned_cols=178 Identities=19% Similarity=0.239 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccchH
Q psy6602 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVN 166 (367)
Q Consensus 87 ~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 166 (367)
.+..+++.+++.++.+|+|||++|||.+|+.+||++|||++|+|+++++.|+++....+...+.++..+........+..
T Consensus 21 ~~~~~~~~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 100 (199)
T 3cqv_A 21 IWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAG 100 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHHHHHHHHHHHTGGGEETTTTEEECTTSCEEEHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCCCCeEEecCCCeecHHHHHhcCcH
Confidence 38889999999999999999999999999999999999999999999999998765444444433333332211112344
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhhhH
Q psy6602 167 NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPS 246 (367)
Q Consensus 167 ~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~ 246 (367)
+.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+|++++.||++|+.+++.
T Consensus 101 ~~~~~i~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L~~ 180 (199)
T 3cqv_A 101 DLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPD 180 (199)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTSCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhHHHHHHhhhcc
Q psy6602 247 LRAVRQSTIERLFFKETI 264 (367)
Q Consensus 247 Lr~l~~~~~e~l~~~~~~ 264 (367)
||+++..+.|.+++.++.
T Consensus 181 Lr~l~~~~~E~l~~~k~~ 198 (199)
T 3cqv_A 181 LRSLNNMHSEELLAFKVH 198 (199)
T ss_dssp HHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999988754
No 41
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=100.00 E-value=6.2e-36 Score=276.41 Aligned_cols=214 Identities=19% Similarity=0.274 Sum_probs=178.7
Q ss_pred CCcccccCCCCCCCCChhhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy6602 65 HPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWD 144 (367)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~ 144 (367)
+|..+++++++..|++.... ++++++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.|||++...
T Consensus 31 ep~~~~~~~~~~~p~~~~~~---~~~l~e~a~~~l~~~VewAK~ip~F~~L~~~DQv~LLk~~w~el~iL~~a~rs~~~~ 107 (269)
T 1t7r_A 31 EPGVVCAGHDNNQPDSFAAL---LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNV 107 (269)
T ss_dssp CCCCCCCCCCTTSCCCHHHH---HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCCCCchhHH---HHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccC
Confidence 45667778777777765443 778999999999999999999999999999999999999999999999999987653
Q ss_pred Cc-eEec-CCccccCCCCCccchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCC-CCCCCCChhHHHHHHHHHHHH
Q psy6602 145 LS-LLIN-CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-ETPGLVDAQPVEMLQDQAQCI 221 (367)
Q Consensus 145 ~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~p-d~~~L~~~~~v~~~q~~~~~~ 221 (367)
++ .+++ ++....+......+..+.++.+.+++.+|++|++|++||+|||||+||+| |++|+++...|+++|++|..+
T Consensus 108 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~a 187 (269)
T 1t7r_A 108 NSRMLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKE 187 (269)
T ss_dssp TTSSEEEETTEEECHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHH
T ss_pred CCCeEEeCCCceecHHhhhhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccCCCccHHHHHHHHHHHHHH
Confidence 33 4444 44333322111223446678889999999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHhhC---CCcchHHHHHHHhhhHhHhhhhhHHHHHHhh--h-ccCCchhHhHHHHHHcccC
Q psy6602 222 LGDYVRGRY---SRQPTRFGRLLLMLPSLRAVRQSTIERLFFK--E-TIGDIPIQRLLGDMYTMEK 281 (367)
Q Consensus 222 L~~y~~~~~---~~~~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~--~-~~~~~~~~~Ll~eml~~~~ 281 (367)
|.+||..++ ++++.||++||++++.||+++..+.|.++.. + ..+..++++++.|||+...
T Consensus 188 L~~y~~~~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~lf~~~~~~~~~~~~~~~Ll~E~~~~~~ 253 (269)
T 1t7r_A 188 LDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQV 253 (269)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHTH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcChHHHHHHHHhCcC
Confidence 999998875 3678999999999999999999999998843 2 2367789999999998544
No 42
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=100.00 E-value=1.6e-35 Score=269.36 Aligned_cols=195 Identities=30% Similarity=0.600 Sum_probs=171.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccchH
Q psy6602 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVN 166 (367)
Q Consensus 87 ~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 166 (367)
.++++++++.+.++.+|+|||++|+|..|+.+||++|||++|+++++++.|||++..++..++.++....+......+..
T Consensus 42 ~~~~l~~~~~~~l~~~vewak~ip~F~~L~~~DQ~~LLk~~w~e~~il~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~~ 121 (240)
T 2p1t_A 42 PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVG 121 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSSEEECTTSCEEEHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCcccccchhhhhchH
Confidence 47889999999999999999999999999999999999999999999999999988776666544433322211112233
Q ss_pred HHH-HHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhhh
Q psy6602 167 NEI-KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLP 245 (367)
Q Consensus 167 ~~~-~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~ 245 (367)
..+ +.+.+++.+|++|++|++||+|||||+||+||++|+++..+|+++|+++..+|++||..++++++.||++|+.+++
T Consensus 122 ~~~~~~~~~~~~~l~~L~ld~~E~~~Lkai~l~~pd~~gl~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~ 201 (240)
T 2p1t_A 122 AIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLP 201 (240)
T ss_dssp HHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 444 3457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccC
Q psy6602 246 SLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281 (367)
Q Consensus 246 ~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~ 281 (367)
.||+++..+.|.+++.+.++..++++++.||++...
T Consensus 202 ~Lr~~~~~~~e~l~~~~~~~~~~~~~ll~eml~~~~ 237 (240)
T 2p1t_A 202 ALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPH 237 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCCCHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHHhCcCCCCchHHHHHHHHcCCC
Confidence 999999999999999999999999999999998654
No 43
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=100.00 E-value=1.4e-35 Score=270.89 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=170.8
Q ss_pred hccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCcc
Q psy6602 84 ILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV 163 (367)
Q Consensus 84 ~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~ 163 (367)
....+.++++++.+.++.+|+|||++|||.+|+.+||++|||++|+|+++|+.||++....+..++.++..+.+......
T Consensus 50 ~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~~~~~~~~~~~~~g~~~~~~~~~~~ 129 (248)
T 2nxx_E 50 CDVRFRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSILFVNNQPYSRDSYNLA 129 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEecCCceecHHHHHhc
Confidence 44558999999999999999999999999999999999999999999999999999886555544444433333221123
Q ss_pred chHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCcchHHHHHHH
Q psy6602 164 RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRY-SRQPTRFGRLLL 242 (367)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~-~~~~~Rf~~LL~ 242 (367)
+..+.++.+.+++.+|++|++|++||+|||||+||+ |++|+++...|+++|++|..+|.+||..+| ++++.||++|++
T Consensus 130 ~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~Rf~~LL~ 208 (248)
T 2nxx_E 130 GMGETIEDLLHFCRTMYSMRVDNAEYALLTAIVIFS-ERPALIEGWKVEKIQEIYLEALRAYVDNRRKPKPGTIFAKLLS 208 (248)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTC-CCSSCTTHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 455778889999999999999999999999999997 999999999999999999999999999998 468999999999
Q ss_pred hhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 243 MLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 243 ~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
+++.||+++..+.|.+++.+..+ .++++|+.|||+..
T Consensus 209 ~L~~Lr~l~~~~~e~l~~~~~~~-~~~~~Ll~Em~~~~ 245 (248)
T 2nxx_E 209 VLTELRTLGNQNSEMCFSLKLKN-KKLPPFLAEIWDVD 245 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-CCccHHHHHHhcCc
Confidence 99999999999999999988875 58999999999854
No 44
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=100.00 E-value=1.6e-35 Score=278.20 Aligned_cols=196 Identities=20% Similarity=0.270 Sum_probs=171.8
Q ss_pred hhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCc
Q psy6602 83 QILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162 (367)
Q Consensus 83 ~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~ 162 (367)
.....+.++++++.+.++.+|+|||+||||.+|+.+||++|||++|+|+++|+.||+++...+..++.++..+.+.....
T Consensus 113 ~~~~~~~~l~el~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~~~l~~~~g~~~~~~~~~~ 192 (310)
T 1z5x_E 113 VAEERFRHITEITILTVQLIVEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDAETDSILFATNQPYTRESYTV 192 (310)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETTTTEEECTTSCEECHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeCCCccccHHHHHh
Confidence 34455899999999999999999999999999999999999999999999999999998755554444443333322122
Q ss_pred cchHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC-CCcchHHHHHH
Q psy6602 163 VRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRY-SRQPTRFGRLL 241 (367)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~-~~~~~Rf~~LL 241 (367)
.++.+.++.+.+++.+|++|++|++||+|||||+||+ |++|+++...|+++|++|..+|.+||..+| ++++.||++||
T Consensus 193 ~g~~~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLf~-d~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~~~~~~~RF~kLL 271 (310)
T 1z5x_E 193 AGMGDTVEDLLRFCRHMCAMKVDNAEYALLTAIVIFS-ERPSLSEGWKVEKIQEIYIEALKAYVENRRKPYATTIFAKLL 271 (310)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTC-CCTTCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 3456778889999999999999999999999999997 999999999999999999999999999998 57899999999
Q ss_pred HhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 242 ~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
++|+.||+++..+.|.+++.+..+ .++++|+.|||+..
T Consensus 272 l~Lp~LR~l~~~~~e~l~~~~~~~-~~~~~Ll~Eml~~~ 309 (310)
T 1z5x_E 272 SVLTELRTLGNMNSETCFSLKLKN-RKVPSFLEEIWDVV 309 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHcCC
Confidence 999999999999999999988875 58999999999853
No 45
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=100.00 E-value=1.2e-35 Score=271.34 Aligned_cols=191 Identities=17% Similarity=0.222 Sum_probs=169.6
Q ss_pred hccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCcc
Q psy6602 84 ILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDV 163 (367)
Q Consensus 84 ~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~ 163 (367)
+...|.++++.+++.++.+|+|||++|||.+|+.+||++|||++|+|+++++.||++...++..++ ++...........
T Consensus 54 ~~~~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~~~~~~~-~g~~~~~~~~~~~ 132 (248)
T 3l0l_A 54 MWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFF-EGKYGGMELFRAL 132 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGGEETTTTEEEE-TTEEECGGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEe-CCCcccHHHHhhc
Confidence 445689999999999999999999999999999999999999999999999999998876655555 4433332222234
Q ss_pred chHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHh
Q psy6602 164 RVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLM 243 (367)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~ 243 (367)
+..+.++.+.+++.+|++|++|++||+|||||+||+||++|+++..+|+++|++|..+|.+||..+++ +.||++|+++
T Consensus 133 ~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~--~~rf~~LLl~ 210 (248)
T 3l0l_A 133 GCSELISSIFDFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHR--QSILAKLPPK 210 (248)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHTTC--GGGGGGSCCT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHhhcc
Confidence 56788899999999999999999999999999999999999999999999999999999999999874 5799999999
Q ss_pred hhHhHhhhhhHHHHHHhhhccCC----chhHhHHHHHHc
Q psy6602 244 LPSLRAVRQSTIERLFFKETIGD----IPIQRLLGDMYT 278 (367)
Q Consensus 244 l~~Lr~l~~~~~e~l~~~~~~~~----~~~~~Ll~eml~ 278 (367)
++||+++..+.|.+++.+..+. .++++|+.|||.
T Consensus 211 -p~LR~i~~~~~e~l~~~k~~~p~~~~~~~p~Ll~Emf~ 248 (248)
T 3l0l_A 211 -GKLRSLCSQHVERLQIFQHLHPIVVQAAFPPLYKELFS 248 (248)
T ss_dssp -THHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHhhCcccccCCCChHHHHhhC
Confidence 9999999999999999999873 578999999984
No 46
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=100.00 E-value=1.4e-35 Score=276.03 Aligned_cols=196 Identities=30% Similarity=0.588 Sum_probs=173.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccch
Q psy6602 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRV 165 (367)
Q Consensus 86 ~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 165 (367)
.+++++++++.+.++.+|+|||+||+|..|+.+||++|||++|+++++++.||+++...+..++.++..+.+......+.
T Consensus 83 ~~~~~~~~~a~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~il~~a~rs~~~~~~~~~~~g~~~~~~~~~~~~~ 162 (282)
T 1lbd_A 83 DPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGV 162 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHGGGGSSSEEECTTSCEEEHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCceEecCCcccccchhhhccc
Confidence 34788999999999999999999999999999999999999999999999999999877766664443333221111223
Q ss_pred HHHHH-HHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhh
Q psy6602 166 NNEIK-LIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLML 244 (367)
Q Consensus 166 ~~~~~-~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l 244 (367)
...++ .+.+++.+|++|++|.+||+|||||+||+||++|+++..+|+++|++|..+|.+||..+|++++.||++||.+|
T Consensus 163 ~~~~~~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gLs~~~~v~~lq~~~~~~L~~y~~~~~~~~~~Rf~~LL~~L 242 (282)
T 1lbd_A 163 GAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRL 242 (282)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSCCSTTTHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 44443 45689999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccC
Q psy6602 245 PSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 281 (367)
Q Consensus 245 ~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~ 281 (367)
+.||+++..+.|.+++.+.++..++++++.||++...
T Consensus 243 ~~Lr~~~~~~~e~l~~~~~~~~~~i~~ll~eml~~~~ 279 (282)
T 1lbd_A 243 PALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPH 279 (282)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999998654
No 47
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=100.00 E-value=2.7e-35 Score=266.53 Aligned_cols=189 Identities=21% Similarity=0.221 Sum_probs=163.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccch
Q psy6602 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRV 165 (367)
Q Consensus 86 ~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 165 (367)
..+.++++++.+.++.+|+|||++|||.+|+.+||++|||++|+|+++++.|+++...... ++...........+.
T Consensus 42 ~~~~~~~~~~~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~~~----~~~~~~~~~~~~~~~ 117 (232)
T 1osh_A 42 ENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLPS----GHSDLLEERIRNSGI 117 (232)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH----HHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCccCC----CCceecHHHHHHcCC
Confidence 4488999999999999999999999999999999999999999999999999987643111 111111000000112
Q ss_pred -HHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhh
Q psy6602 166 -NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLML 244 (367)
Q Consensus 166 -~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l 244 (367)
.+.++.+.+++.+|++|++|++||+|||||+||+||++|++++..|+++|++|..+|.+||..++++++.||++|++++
T Consensus 118 ~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL~~L 197 (232)
T 1osh_A 118 SDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRL 197 (232)
T ss_dssp CTTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence 2346788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcc
Q psy6602 245 PSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTM 279 (367)
Q Consensus 245 ~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~ 279 (367)
+.||+++..+.|.+++.+. +..++++++.|||+.
T Consensus 198 ~~Lr~l~~~~~e~l~~~k~-~~~~~~~Ll~Em~~~ 231 (232)
T 1osh_A 198 TELRTFNHHHAEMLMSWRV-NDHKFTPLLCEIWDV 231 (232)
T ss_dssp HHHHTHHHHHHHHHHHHHH-TTCCCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCCChHHHHHhcC
Confidence 9999999999999999887 688999999999975
No 48
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=100.00 E-value=1.3e-34 Score=268.01 Aligned_cols=191 Identities=24% Similarity=0.338 Sum_probs=168.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccch
Q psy6602 86 MSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRV 165 (367)
Q Consensus 86 ~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 165 (367)
..+.++++++++.++.+|+|||++|||.+|+.+||++|||++|+|+++|+.||+++..++..++.++..+..... ..+.
T Consensus 74 ~~~~~~~~~~~~~l~~~v~waK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~l~~~~g~~~~~~~~-~~~~ 152 (271)
T 1ovl_A 74 QHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQC-VRGF 152 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBTTTTEEECTTSBEEEHHHH-TTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHhHHHHHHHHHHHHhcCCCCeEEeeCCeeecHHHH-HhhH
Confidence 347889999999999999999999999999999999999999999999999999998766444444433332211 1234
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhC--CCcchHHHHHHHh
Q psy6602 166 NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRY--SRQPTRFGRLLLM 243 (367)
Q Consensus 166 ~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~--~~~~~Rf~~LL~~ 243 (367)
.+.++.+.+++.+|++|++|++||+|||||+||+| ++|+++...|+++|++|..+|.+||..++ ++++.||++||++
T Consensus 153 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~~-~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~LL~~ 231 (271)
T 1ovl_A 153 GEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVTE-RHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGK 231 (271)
T ss_dssp TTHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSSC-CTTCSCHHHHHHHHHHHHHHHHHHHHGGGTTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 56778889999999999999999999999999995 89999999999999999999999999874 6889999999999
Q ss_pred hhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHc
Q psy6602 244 LPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 278 (367)
Q Consensus 244 l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~ 278 (367)
++.||+++..+.|.+++.+.++..++++++.+||.
T Consensus 232 L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~el~~ 266 (271)
T 1ovl_A 232 LPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLFL 266 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 99999999999999999999999999888888875
No 49
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=100.00 E-value=1.8e-34 Score=266.28 Aligned_cols=187 Identities=21% Similarity=0.271 Sum_probs=159.5
Q ss_pred HHHHHHHH-HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccc-cCCC--CCccch
Q psy6602 90 KCQETTAR-LLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKAR-ERLP--PDDVRV 165 (367)
Q Consensus 90 ~l~e~~~~-~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~-~~~~--~~~~~~ 165 (367)
++|+.+.+ .++.+|+|||++|||.+|+.+||++|||++|+|+++|+.|+++.. +..++.++..+ .+.. ....++
T Consensus 76 ~~c~~~~~~~v~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~ 153 (269)
T 3u9q_A 76 QGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQGFMTREFLKSLRKPF 153 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEET--TEEEETTTTEEEEHHHHHHSCTTG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChhhcCHHHHHHHHHHhhHHHHHHHHHHhcCC--CCeEEeCCCccccHHHHHHhhhhH
Confidence 34555554 588999999999999999999999999999999999999987653 44555554432 2211 011234
Q ss_pred HHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhhh
Q psy6602 166 NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLP 245 (367)
Q Consensus 166 ~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~ 245 (367)
.+.++.+.+++.+|++|++|++||+|||||+||+||++|+++...|+++|++|..+|.+||..+||+++.||++||++++
T Consensus 154 ~~~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~Rf~kLL~~Lp 233 (269)
T 3u9q_A 154 GDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMT 233 (269)
T ss_dssp GGSSHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhhhhHHHHHHhhh-ccCCchhHhHHHHHHc
Q psy6602 246 SLRAVRQSTIERLFFKE-TIGDIPIQRLLGDMYT 278 (367)
Q Consensus 246 ~Lr~l~~~~~e~l~~~~-~~~~~~~~~Ll~eml~ 278 (367)
.||+++..+.+++++.+ ..+..++++|+.|||+
T Consensus 234 ~LR~i~~~~~~~l~~~k~~~~~~~~~~Ll~Em~~ 267 (269)
T 3u9q_A 234 DLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYK 267 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCcCHHHHHHHh
Confidence 99999999999996554 5778999999999997
No 50
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=100.00 E-value=1.1e-33 Score=256.59 Aligned_cols=199 Identities=28% Similarity=0.443 Sum_probs=174.0
Q ss_pred hhhccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCC
Q psy6602 82 LQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPD 161 (367)
Q Consensus 82 ~~~~~~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~ 161 (367)
..+..+++++++++.+.++.+|+|||++|+|..|+.+||++|||++|+++++|+.||++....+..++.++.........
T Consensus 37 ~~~~~~~~~~~~~~~~~l~~~v~wak~~p~F~~L~~~DQ~~LLk~~~~~~~~L~~a~~s~~~~~~~~~~~g~~~~~~~~~ 116 (237)
T 1pzl_A 37 AKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGNDYIVPRHCPE 116 (237)
T ss_dssp TSCBCCHHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHSHHHHHHHHHHHHHTTSSSEEECTTSCEEESSCGG
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeecCCcccCccchh
Confidence 35567799999999999999999999999999999999999999999999999999999875444444333333333222
Q ss_pred ccchHHHHHH-HHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHH
Q psy6602 162 DVRVNNEIKL-IQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRL 240 (367)
Q Consensus 162 ~~~~~~~~~~-~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~L 240 (367)
..+....... +.+++.+|++|++|++||+|||||+||+||++|+++...|+++|+.+.++|++|+..++++++.||++|
T Consensus 117 ~~~~~~~~~~~~~~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~~l~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~~L 196 (237)
T 1pzl_A 117 LAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGEL 196 (237)
T ss_dssp GGGGHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTCTTCSCHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHH
Confidence 2234444444 568999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 241 LLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 241 L~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
+.+++.+|++...+.|.+++.+.++..+++.++.|||..+
T Consensus 197 L~~l~~lr~~~~~~~e~l~~~~~~~~~~~~~l~~em~~~~ 236 (237)
T 1pzl_A 197 LLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGG 236 (237)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhCCCcHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999753
No 51
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=100.00 E-value=5.7e-35 Score=265.67 Aligned_cols=189 Identities=14% Similarity=0.191 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceE---ecCCccccCCCCC--c
Q psy6602 88 AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL---INCEKARERLPPD--D 162 (367)
Q Consensus 88 ~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l---~~~~~~~~~~~~~--~ 162 (367)
.+++++++++.++.+|+|||++|||.+|+.+||++|||++|+|+++++.||++++..+... +.++..+.+.... .
T Consensus 43 p~~l~~l~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (243)
T 3up3_A 43 PADIMNIMDVTMRRFVKMAKRLPAFNDLSQDGKFALLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINMFDQLN 122 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHEETTTTEECCTTSCTTCCEEGGGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCeeeecccCCCccccHHHHhhhc
Confidence 4579999999999999999999999999999999999999999999999999987666542 2233233322111 1
Q ss_pred cchHH-HHHHHHHHHHHHHh-cCCCcchhhhhHHHHhcCCCCCCCCCh---hHHHHHHHHHHHHHHHHHHhhC-CCcchH
Q psy6602 163 VRVNN-EIKLIQEILARFRQ-LSPDGSECGCMKAVILFTPETPGLVDA---QPVEMLQDQAQCILGDYVRGRY-SRQPTR 236 (367)
Q Consensus 163 ~~~~~-~~~~~~~~~~~l~~-L~ld~~E~alLkai~L~~pd~~~L~~~---~~v~~~q~~~~~~L~~y~~~~~-~~~~~R 236 (367)
.|+.+ .++.+.+++.+|+. |++|++||+|||||+||+|+ +|+++. ..|+++|++|..+|++||..+| |+++.|
T Consensus 123 ~g~~~~~~~~l~~~~~~~~~~L~ld~~E~alLkAivLfsp~-~gL~~~~~~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~r 201 (243)
T 3up3_A 123 ADVRSEQKMRFLQFFKIFHEDIRSNDLVISMIMLIVLFSPR-DSITDPEDRRIIARHHEQFSALLNRYLESLYGDDAHQL 201 (243)
T ss_dssp TTTHHHHHHHHHHHHHTSCHHHHTCHHHHHHHHHHHHSCCC-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcCCC-CCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCCChhHH
Confidence 34555 57889999999997 99999999999999999998 999875 8999999999999999999777 788999
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcc
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTM 279 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~ 279 (367)
|++||++++.||+++. +.|.+++.+. +..++++|+.|||+.
T Consensus 202 f~kLL~~Lp~LR~i~~-~~e~lf~~k~-~~~~~~pLl~E~f~~ 242 (243)
T 3up3_A 202 NEQLPTALRMLREISA-SSGMLFLGTV-NTSEAEPLPREFFKV 242 (243)
T ss_dssp HHHHHHHHHHHHHHHH-TCTTTTTTSC-CGGGSCHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhccc-CCCCCCcHHHHHhCC
Confidence 9999999999999999 8888887664 567899999999874
No 52
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=100.00 E-value=9.4e-34 Score=279.89 Aligned_cols=192 Identities=30% Similarity=0.595 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccCCCCCccchHHH
Q psy6602 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNE 168 (367)
Q Consensus 89 ~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 168 (367)
..+++++++.++.+|+|||+||+|.+|+.+||++|||++|+|+++++.|||++...+..++.++..+........+..+.
T Consensus 271 ~~l~e~a~~~L~~vVeWAK~iP~F~~L~~~DQi~LLK~~w~elliL~~a~rs~~~~~~~ll~~g~~i~~~~~~~~~~~~~ 350 (467)
T 3dzy_A 271 TNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAI 350 (467)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHHTSSSTTBCCCSSSCCCBTHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHhHHHHHHHHHHHHHhccCCCceEecCCceechhhhhhhcchHH
Confidence 34899999999999999999999999999999999999999999999999998877776665554443332222234455
Q ss_pred HHHHH-HHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhhhHh
Q psy6602 169 IKLIQ-EILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSL 247 (367)
Q Consensus 169 ~~~~~-~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l~~L 247 (367)
++.+. +++.+|++|++|++||+|||||+||+||++||++...|+++|+++..+|++|+..++++++.||++||++|+.|
T Consensus 351 ~~~il~~lv~~l~~L~ld~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~p~Rf~kLLl~Lp~L 430 (467)
T 3dzy_A 351 FDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPAL 430 (467)
T ss_dssp HHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 55444 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHhhhccCCchhHhHHHHHHccc
Q psy6602 248 RAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 280 (367)
Q Consensus 248 r~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 280 (367)
|+++..+.|.+++.++++.++++.|+.|||+..
T Consensus 431 Rsi~~~~~E~l~~~kl~g~v~i~~Ll~EMl~a~ 463 (467)
T 3dzy_A 431 RSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP 463 (467)
T ss_dssp HHHHHHHHHTTTTTSTTSCCCCCSHHHHCC---
T ss_pred HHHHHHHHHHHHHhhccCCccHHHHHHHHHcCC
Confidence 999999999999999999999999999999854
No 53
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=100.00 E-value=6.9e-33 Score=270.74 Aligned_cols=189 Identities=22% Similarity=0.297 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCcc-ccCCC--CCccc
Q psy6602 88 AEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKA-RERLP--PDDVR 164 (367)
Q Consensus 88 ~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~-~~~~~--~~~~~ 164 (367)
+..+...+...++.+|+|||+||||.+|+.+||++|||++|+|+++|++|+.++. +..++..+.. ..+.. ....+
T Consensus 224 ~~~~~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 301 (419)
T 3dzy_D 224 FQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGVLISEGQGFMTREFLKSLRKP 301 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGBCS--SEEEEGGGTEEEEHHHHHSSSGG
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcC--CCceeecCcccccHHHHHhhhhh
Confidence 4455666677899999999999999999999999999999999999999966643 4445544432 22111 11223
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHhh
Q psy6602 165 VNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLML 244 (367)
Q Consensus 165 ~~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~~~~~Rf~~LL~~l 244 (367)
+.+.++.+++|+.+|++|+||++||+|||||+||+||++||.+...|+++|+++..+|.+|+..+||+++.||++||++|
T Consensus 302 ~~~l~~~i~~f~~~l~~L~ld~~E~alLkAivLf~pD~~gL~~~~~Ve~lQe~~~~aL~~yi~~~~p~~~~rf~kLLl~L 381 (419)
T 3dzy_D 302 FGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKM 381 (419)
T ss_dssp GSGGGHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHhhhhhHHHHHHhhh-ccCCchhHhHHHHHHc
Q psy6602 245 PSLRAVRQSTIERLFFKE-TIGDIPIQRLLGDMYT 278 (367)
Q Consensus 245 ~~Lr~l~~~~~e~l~~~~-~~~~~~~~~Ll~eml~ 278 (367)
+.||+++..+.+.+++.+ ..+..++++|+.|||+
T Consensus 382 p~LR~i~~~~~~~l~~~k~~~~~~~l~~Ll~Em~~ 416 (419)
T 3dzy_D 382 TDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYK 416 (419)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSCCCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHH
Confidence 999999999999996654 5678899999999997
No 54
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=99.98 E-value=1.6e-32 Score=248.94 Aligned_cols=188 Identities=15% Similarity=0.206 Sum_probs=151.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEecCCccccC----CCCCc
Q psy6602 87 SAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARER----LPPDD 162 (367)
Q Consensus 87 ~~~~l~e~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~~~~~l~~~~~~~~~----~~~~~ 162 (367)
+.++++++++..++.+|+|||++|||.+|+.+||++|||++|+|+++++.|++++...+...+.++..+.. .....
T Consensus 42 ~p~~i~~l~~~~l~~iVefAK~iPgF~~L~~~DQi~LLK~~~~ElliLr~a~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 121 (244)
T 3gyt_A 42 NPTDILNVMDITMRRLVKMAKRLGAFNEISEAGKFSLLKGGMIEMLTIRGVTVFNADKGVWQTPVDGHSQISFNMFDKLR 121 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTTTEECCTTSTTCCEEGGGGGGSC
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEeecCCcccchhHHHHHHhh
Confidence 35579999999999999999999999999999999999999999999999999876555444433211100 00001
Q ss_pred cch-----HHHHHHHHHHHHHHHhcCCCcchhhhhHHHHhcCCCCCCCC---ChhHHHHHHHHHHHHHHHHHHhhC-CCc
Q psy6602 163 VRV-----NNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLV---DAQPVEMLQDQAQCILGDYVRGRY-SRQ 233 (367)
Q Consensus 163 ~~~-----~~~~~~~~~~~~~l~~L~ld~~E~alLkai~L~~pd~~~L~---~~~~v~~~q~~~~~~L~~y~~~~~-~~~ 233 (367)
.+. .+.++.+.+|...++. ++.||+|||||+||+||++|+. ++..|+++|+++..+|++|+..+| |++
T Consensus 122 ~~~~~~~~~~~~~~~~~f~~~l~~---~~~E~alLkAivLfspDr~gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~~~p~~ 198 (244)
T 3gyt_A 122 PDIKDTQKKGFLHFFNLLHSDVRK---NDLAIDIIVLMVLFDSKREGLVSQQDKETVEKLHRNYESLLHRYLYSIHKEEA 198 (244)
T ss_dssp TTTHHHHHHHHHHHHHHSCHHHHT---CHHHHHHHHHHHHSCTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSH
T ss_pred hcchhhHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 111 2334555666666665 5679999999999999999999 789999999999999999999888 788
Q ss_pred chHHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcc
Q psy6602 234 PTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTM 279 (367)
Q Consensus 234 ~~Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~ 279 (367)
+.||++||++++.||+++..+.+ +++ ...+..++++|+.|||+.
T Consensus 199 ~~rf~kLL~~Lp~LR~i~~~~~~-lf~-~~~~~~~~~pLl~Eif~~ 242 (244)
T 3gyt_A 199 EQRFASIPKALVALRKVAENAVT-LFL-GAGNTTEAASLPKEFFAT 242 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTT-TTT-TSCCCTTSCTTGGGTSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHH-hccCCccCCcHHHHHhCc
Confidence 99999999999999999999999 444 445566899999999874
No 55
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.72 E-value=8.5e-18 Score=154.53 Aligned_cols=113 Identities=22% Similarity=0.254 Sum_probs=104.2
Q ss_pred HHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCC
Q psy6602 236 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR 315 (367)
Q Consensus 236 Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~ 315 (367)
-...+..+...++.+..+..|+++++.+.- .++|++|+.+..+|+++|+++..||.+|+..+||+
T Consensus 155 ~i~~l~~~~~~l~~L~ld~~E~~lLkAivL---------------~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~ 219 (268)
T 3f5c_B 155 AVQAIKSFFFKCWSLNIDTKEYAYLKGTVL---------------FNPDLPGLQCVKYIEGLQWRTQQILTEHIRMMQRE 219 (268)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---------------SCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 345666788889999999999999987752 24789999999999999999999999999999999
Q ss_pred CcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcc
Q psy6602 316 QPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 363 (367)
Q Consensus 316 ~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~ 363 (367)
++.||++||++||+||+++.+++|++||++++|.+||++||.|||++|
T Consensus 220 ~~~Rf~~LL~~Lp~LR~i~~~~~e~l~~~k~~g~~~i~~Ll~Eml~a~ 267 (268)
T 3f5c_B 220 YQIRSAELNSALFLLRFINSDVVTELFFRPIIGAVSMDDMMLEMLCAK 267 (268)
T ss_dssp SSHHHHHHHHHHHHHTTSCSSHHHHHHTHHHHCSCCHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999986
No 56
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=99.71 E-value=1.9e-17 Score=151.50 Aligned_cols=110 Identities=31% Similarity=0.449 Sum_probs=99.9
Q ss_pred HHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcCh
Q psy6602 240 LLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 319 (367)
Q Consensus 240 LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~r 319 (367)
+..+...++.+..+..|+++++.+.- .+||++|+.+..+|+++|+++..||.+|+..+||+++.|
T Consensus 147 l~~~~~~l~~L~ld~~E~~lLkAivL---------------~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~R 211 (257)
T 3plz_A 147 AQELVAKLRSLQFDQREFVCLKFLVL---------------FSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEK 211 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH---------------SCTTCCSCTTHHHHHHHHHHHHHHHHHHHHHHCTTSTTH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH---------------hcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCchhH
Confidence 44566778888899999999887752 247899999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 320 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 320 ~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
|++||++||+||+++..++|++||++++|.+|+++||.|||++|+
T Consensus 212 f~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~i~~Ll~Eml~~k~ 256 (257)
T 3plz_A 212 FGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 256 (257)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSCCCSHHHHHHTC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999985
No 57
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=99.70 E-value=2.5e-17 Score=149.44 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=101.3
Q ss_pred HHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCc
Q psy6602 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP 317 (367)
Q Consensus 238 ~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~ 317 (367)
..+..+...++.+..+..|+++++.+.- .+||++|+.+..+|+++|+++..||.+|+..+||+++
T Consensus 121 ~~i~~~~~~l~~L~ld~~E~~lLkaivL---------------~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~ 185 (243)
T 3ltx_A 121 EQVAAVSEQMMQNHLHKDELLLLQAMVL---------------VNAEVRRLASYNQIFNMQQSLLDAIVDTAQKYHPDNV 185 (243)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH---------------HTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------hCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 3445567778888899999998887652 2479999999999999999999999999999999999
Q ss_pred ChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcccc
Q psy6602 318 TRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 365 (367)
Q Consensus 318 ~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~~ 365 (367)
.||++||++||+||+++..++|++|+.+++|.+|+++||.|||++++.
T Consensus 186 ~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~~ 233 (243)
T 3ltx_A 186 RHVPAVLLLLTHIRQAGERGIAFFQRLKSEGVVTFCDLLKEMLDAQDF 233 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999999998754
No 58
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=150.79 Aligned_cols=114 Identities=30% Similarity=0.484 Sum_probs=102.4
Q ss_pred HHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCC
Q psy6602 236 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR 315 (367)
Q Consensus 236 Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~ 315 (367)
+...+..+...++.+..+..|+++++...- .+||++|+.+..+|+++|+++..||.+|+..+||+
T Consensus 124 ~i~~l~~~~~~l~~L~ld~~E~~lLkAivL---------------~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~ 188 (249)
T 3p0u_A 124 HIWKLQEFCNSMAKLDIDGYEYAYLKAIVL---------------FSPDHPGLTSTSQIEKFQEAAQMELQDYVQATYSE 188 (249)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---------------TCSCSTTCCCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHH---------------hcCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344455677888999999999999987752 24789999999999999999999999999999999
Q ss_pred CcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 316 QPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 316 ~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
++.||++||++||+||+++.+++|++||++++|.+|+++||.|||++++
T Consensus 189 ~~~Rf~~LL~~L~~Lr~i~~~~~e~l~f~~~~g~~~i~~Ll~eml~~~~ 237 (249)
T 3p0u_A 189 DTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMET 237 (249)
T ss_dssp CSTHHHHHHTTHHHHHTSCHHHHHHHHCCSSHHHHCHHHHHHHHTTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHeeeecccCCCCHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999874
No 59
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=99.67 E-value=8.2e-17 Score=153.13 Aligned_cols=110 Identities=31% Similarity=0.449 Sum_probs=94.0
Q ss_pred HHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcCh
Q psy6602 240 LLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 319 (367)
Q Consensus 240 LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~r 319 (367)
+..+...++.+..+..|+++++.++- .++|++||.+..+|+++|+++..||.+|+..+||+++.|
T Consensus 242 l~~l~~~l~~L~ld~~EyalLkAIvL---------------fnpd~~gLs~~~~Ve~lQe~~~~aL~~y~~~~~p~~~~R 306 (352)
T 3tx7_B 242 AQELVAKLRSLQFDQREFVCLKFLVL---------------FSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEK 306 (352)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH---------------SCSCC------CHHHHHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---------------hcCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 44566778888999999999887752 247899999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 320 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 320 ~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
|++||++||+||+++.+++|+|||++++|.+++++||.|||++|+
T Consensus 307 F~kLLllLp~LR~ls~~~~e~L~~~kl~g~~~i~~LL~EMl~akr 351 (352)
T 3tx7_B 307 FGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAKR 351 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCSSCHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999985
No 60
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=99.67 E-value=1e-16 Score=145.39 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=101.9
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcC
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 318 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~ 318 (367)
.+..+...++.+..+..|+++++...- .+||++|+.+...|+++|+++..||.+|+..+||+++.
T Consensus 133 ~~~~~~~~l~~L~ld~~E~~lLkAivL---------------~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~ 197 (243)
T 2iz2_A 133 YFNELQNKLQDLKFDMGDYVCMKFLIL---------------LNPSVRGIVNRKTVSEGHDNVQAALLDYTLTCYPSVND 197 (243)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH---------------CCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH---------------cCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 344566788999999999999987752 24789999999999999999999999999999999999
Q ss_pred hHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 319 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 319 r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
||++||++||+||+++.+++|++||++++|.+|+++|+.|||++++
T Consensus 198 Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~ 243 (243)
T 2iz2_A 198 KFRGLVNILPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHAKR 243 (243)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999884
No 61
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=99.67 E-value=7.1e-17 Score=146.91 Aligned_cols=112 Identities=27% Similarity=0.383 Sum_probs=97.9
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCC--
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYS-- 314 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p-- 314 (367)
+..+......++.+..+..|+++++.+.- .+||++|+.+..+|+++|+++..||.+|+..+||
T Consensus 131 ~~~l~~~~~~l~~L~ld~~E~~lLkAivL---------------~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~ 195 (248)
T 3k6p_A 131 GAALLQLVRRLQALRLEREEYVLLKALAL---------------ANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPG 195 (248)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHH---------------HTCCCTTCSCHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------hCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455667778899999999999887652 2478999999999999999999999999999999
Q ss_pred --CCcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcc
Q psy6602 315 --RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 363 (367)
Q Consensus 315 --~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~ 363 (367)
+++.||++||++||+||+++.+++|++||++++|.+|+++||.|||++|
T Consensus 196 ~~~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~k~~g~~~i~~Ll~Eml~~k 246 (248)
T 3k6p_A 196 GGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEAM 246 (248)
T ss_dssp CCCCCH-HHHHHTTHHHHHHHHHHHHHHHHCC-CCCSSCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999999986
No 62
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.67 E-value=1.1e-16 Score=145.21 Aligned_cols=113 Identities=21% Similarity=0.377 Sum_probs=103.2
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCC
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ 316 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~ 316 (367)
+..+......++.+..+..|+++++.+.- .++|++|+.+...|+++|+++..||.+|+..+||++
T Consensus 131 ~~~l~~~~~~l~~L~ld~~E~~lLkAivL---------------~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~ 195 (244)
T 2e2r_A 131 NNAILQLVKKYKSMKLEKEEFVTLKAIAL---------------ANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMED 195 (244)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHH---------------HTCCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hccCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34555677888999999999999987752 247899999999999999999999999999999999
Q ss_pred cChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 317 PTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 317 ~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
+.||++||++||+||+++.+++|++||.+++|.+|+++|+.|||+++.
T Consensus 196 ~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~ 243 (244)
T 2e2r_A 196 PRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAKV 243 (244)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCCSCCCHHHHHHHTSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999999999999874
No 63
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=99.67 E-value=1.4e-16 Score=143.99 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=98.8
Q ss_pred HHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCc
Q psy6602 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP 317 (367)
Q Consensus 238 ~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~ 317 (367)
..+......++.+..+..|+++++...- .+||++|+.+...|+++|+++..||.+|+..+||+++
T Consensus 128 ~~i~~~~~~l~~L~ld~~E~~lLkaivL---------------~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~ 192 (236)
T 1fcy_A 128 DLVFAFAGQLLPLEMDDTETGLLSAICL---------------ICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQP 192 (236)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHH---------------SCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh---------------cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCch
Confidence 3455566778888899999998877642 3478999999999999999999999999999999999
Q ss_pred ChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHh
Q psy6602 318 TRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 361 (367)
Q Consensus 318 ~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~ 361 (367)
.||++||++||+||+++.+++|++||.+++|.+|+++|+.||++
T Consensus 193 ~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~ 236 (236)
T 1fcy_A 193 YMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLE 236 (236)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCHHHHHHHC
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHhC
Confidence 99999999999999999999999999999999999999999985
No 64
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.66 E-value=2.7e-16 Score=144.84 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=97.8
Q ss_pred HHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCc
Q psy6602 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP 317 (367)
Q Consensus 238 ~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~ 317 (367)
..+..+...++.+..+..|+++++...- .++|++|+.+..+|+++|+++..||++|+..+||+++
T Consensus 161 ~~l~~~~~~~~~L~ld~~E~alLkAivL---------------f~pd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~ 225 (273)
T 3vi8_A 161 EPKFDFAMKFNALELDDSDISLFVAAII---------------CCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDI 225 (273)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHH---------------SCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------hCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 4455567778888899999998887642 2589999999999999999999999999999999999
Q ss_pred ChHHHHHhhchhhhhhchhhHHHHH-HhhhcCCCChHHHHHHHHh
Q psy6602 318 TRFGRLLLMLPSLRAVRQSTIERLF-FKETIGDIPIQRLLGDMYT 361 (367)
Q Consensus 318 ~r~~~lLl~Lp~lr~i~~~~~e~l~-~~~~~g~~~i~~ll~eml~ 361 (367)
.||+|||++||+||+|+..+.|.++ |++..|.+++++||.|||.
T Consensus 226 ~rF~kLL~~Lp~LR~l~~~~~e~l~~~k~~~~~~~~~~Ll~Emf~ 270 (273)
T 3vi8_A 226 FLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAALHPLLQEIYR 270 (273)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccHHHHHHHH
Confidence 9999999999999999999999998 5667899999999999996
No 65
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=99.65 E-value=1.7e-16 Score=144.20 Aligned_cols=111 Identities=26% Similarity=0.300 Sum_probs=100.5
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcC
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 318 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~ 318 (367)
.+..+...++.+..+..|+++++.+.- .++|++|+.+...|+++|+++..||.+|+..+||+++.
T Consensus 135 ~~~~~~~~~~~L~ld~~E~~lLkAivL---------------~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~ 199 (246)
T 1ymt_A 135 RAQELVLQLHALQLDRQEFVCLKFLIL---------------FSLDVKFLNNHSLVKDAQEKANAALLDYTLSHYPHSGD 199 (246)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH---------------TCSCGGGSSCHHHHHHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHh---------------cCCcccccccHHHHHHHHHHHHHHHHHHHHhcCCchhh
Confidence 344567788999999999999987752 24789999999999999999999999999999999999
Q ss_pred hHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 319 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 319 r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
||++||++||+||+++..+.|++||.+++|.+|+++|+.|||++++
T Consensus 200 Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~ 245 (246)
T 1ymt_A 200 KFQQLLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAKQ 245 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCTTCHHHHHHHC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhCcc
Confidence 9999999999999999999999999999999999999999999885
No 66
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=99.65 E-value=1.7e-16 Score=145.04 Aligned_cols=109 Identities=19% Similarity=0.298 Sum_probs=95.5
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHh--hCC
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRG--RYS 314 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~--~~p 314 (367)
+..+......++.+..+..|+++++.+.- | +|++||.+..+|+++|+++..||++|+.. .||
T Consensus 134 ~~~l~~~~~~l~~L~ld~~E~a~LkAivL-----------f-----sd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p 197 (257)
T 3v3e_B 134 IDSILAFSRSLHSLLVDVPAFACLSALVL-----------I-----TDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEP 197 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH-----------S-----SCCTTCSSHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----------h-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33455566678888999999999887652 1 38999999999999999999999999974 479
Q ss_pred CCcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHh
Q psy6602 315 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 361 (367)
Q Consensus 315 ~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~ 361 (367)
+++.||+|||++||+||+|+++++|+|||+|++|.+|+++|+.|||.
T Consensus 198 ~~~~rf~kLL~~Lp~LR~l~~~~~e~l~~~k~~~~~~~~~Ll~Emf~ 244 (257)
T 3v3e_B 198 QPASCLSRLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFM 244 (257)
T ss_dssp C-CHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999995
No 67
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.65 E-value=2.7e-16 Score=144.50 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=98.6
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcC
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 318 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~ 318 (367)
.+..+...++.+..+..|+++++.+.- .+||++|+.+..+|+++|+++..||.+|+..+||+++.
T Consensus 153 ~i~~~~~~l~~L~ld~~E~~lLkAIvL---------------~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~ 217 (266)
T 3kmr_A 153 LVFAFANQLLPLEMDDAETGLLSAICL---------------ICGDRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPH 217 (266)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHH---------------SCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH---------------hCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCccc
Confidence 344556778888899999998887642 34789999999999999999999999999999999999
Q ss_pred hHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcc
Q psy6602 319 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 363 (367)
Q Consensus 319 r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~ 363 (367)
||++||++||+||+++.+++|++||.+++|.+++++|+.|||+++
T Consensus 218 Rf~~LL~~Lp~Lr~i~~~~~e~l~~~k~~~~~~~~~Ll~Eml~~~ 262 (266)
T 3kmr_A 218 MFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENS 262 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCC
Confidence 999999999999999999999999999999999999999999875
No 68
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=141.17 Aligned_cols=111 Identities=41% Similarity=0.641 Sum_probs=101.5
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcC
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 318 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~ 318 (367)
.+..+...++.+..+..|+++++.+.- .++|++|+.+...|+++|+++..||.+|+..+||+++.
T Consensus 124 ~~~~~~~~~~~L~ld~~E~~lLkaivL---------------~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~ 188 (244)
T 3cjw_A 124 IFQEQVEKLKALHVDSAEYSCLKAIVL---------------FTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPT 188 (244)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH---------------SCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH---------------hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 344566788999999999999987752 24789999999999999999999999999999999999
Q ss_pred hHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 319 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 319 r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
||++||++||+||+++.+++|++|+.+++|.+|+++|+.||++++.
T Consensus 189 Rf~~LLl~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~ 234 (244)
T 3cjw_A 189 RFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGS 234 (244)
T ss_dssp HHHHHHTTHHHHHHSCHHHHHHHHTHHHHTTCCGGGTHHHHHTCCC
T ss_pred HHHHHHHHhHHHHhhhHHHHHHHHhhcccCCCcHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999864
No 69
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.62 E-value=2.8e-16 Score=155.05 Aligned_cols=150 Identities=27% Similarity=0.427 Sum_probs=117.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhC---------CCcc-------------hHHHHHH-HhhhHhHhhhhhHHH
Q psy6602 200 PETPGLVDAQPVEMLQDQAQCILGDYVRGRY---------SRQP-------------TRFGRLL-LMLPSLRAVRQSTIE 256 (367)
Q Consensus 200 pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~---------~~~~-------------~Rf~~LL-~~l~~Lr~l~~~~~e 256 (367)
|....|...+++.-++.-+.+.+.-....+. +++. .-+-.++ .++..++.+..+..|
T Consensus 292 P~F~~L~~~DQi~LLK~~w~elliL~~a~rs~~~~~~~ll~~g~~i~~~~~~~~~~~~~~~~il~~lv~~l~~L~ld~~E 371 (467)
T 3dzy_A 292 PHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTE 371 (467)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHHHHHHHHHHTSSSTTBCCCSSSCCCBTHHHHTTTCHHHHHHHHHHTHHHHHHHTCCHHH
T ss_pred cchhcCCHHHHHHHHHhHHHHHHHHHHHHHhccCCCceEecCCceechhhhhhhcchHHHHHHHHHHHHHHHHhcCCHHH
Confidence 4566677677777777776665543332221 1110 1122344 566778888888888
Q ss_pred HHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcChHHHHHhhchhhhhhchh
Q psy6602 257 RLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQS 336 (367)
Q Consensus 257 ~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~r~~~lLl~Lp~lr~i~~~ 336 (367)
+++++.++- .++|++||.+...|+++|++++.+|.+|+..+||+++.||++||++||+||+++.+
T Consensus 372 ~~lLkAIvL---------------fnpd~~gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~p~Rf~kLLl~Lp~LRsi~~~ 436 (467)
T 3dzy_A 372 LGCLRAIVL---------------FNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLK 436 (467)
T ss_dssp HHHHHHHHH---------------SCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------hCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 888877642 24789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 337 TIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 337 ~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
++|+|||++++|.+||+.||.|||++.+
T Consensus 437 ~~E~l~~~kl~g~v~i~~Ll~EMl~a~~ 464 (467)
T 3dzy_A 437 CLEHLFFFKLIGDTPIDTFLMEMLEAPH 464 (467)
T ss_dssp HHHTTTTTSTTSCCCCCSHHHHCC----
T ss_pred HHHHHHHhhccCCccHHHHHHHHHcCCC
Confidence 9999999999999999999999999864
No 70
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=99.62 E-value=8.3e-16 Score=141.15 Aligned_cols=109 Identities=29% Similarity=0.424 Sum_probs=100.8
Q ss_pred HHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcCh
Q psy6602 240 LLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR 319 (367)
Q Consensus 240 LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~r 319 (367)
+..+...++.+..+..|+++++.+.- .++|++|+.+...|+++|+++..+|.+|+..+||+++.|
T Consensus 147 ~~~~~~~~~~L~ld~~E~~lLkAivL---------------~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~R 211 (264)
T 1g2n_A 147 LSELSLKMRTLRVDQAEYVALKAIIL---------------LNPDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGR 211 (264)
T ss_dssp HHHTHHHHHHTTCCHHHHHHHHHHHH---------------SCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH---------------hCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCHhhH
Confidence 44577788999999999999987752 247899999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcc
Q psy6602 320 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 363 (367)
Q Consensus 320 ~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~ 363 (367)
|++||++||+||+++..++|++||.+++|.+++++|+.|||+++
T Consensus 212 f~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~ 255 (264)
T 1g2n_A 212 FAALLLRLPALRSISLKSFEHLFFFHLVADTSIAGYIRDALRNH 255 (264)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTTCBCTTTHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999876
No 71
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.62 E-value=1.4e-15 Score=140.83 Aligned_cols=108 Identities=20% Similarity=0.294 Sum_probs=100.4
Q ss_pred HhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcChHH
Q psy6602 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFG 321 (367)
Q Consensus 242 ~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~r~~ 321 (367)
.+...++.+..+..|+++++.+.- .+||++|+.+...|+++|+++..||.+|+..+||+++.||+
T Consensus 163 ~~~~~~~~L~ld~~E~~lLkAivL---------------~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~ 227 (279)
T 1hg4_A 163 ELSVKMKRLNLDRRELSCLKAIIL---------------YNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFA 227 (279)
T ss_dssp HTHHHHHHHTCCHHHHHHHHHHHH---------------SCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH---------------cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHH
Confidence 467788999999999999987752 24789999999999999999999999999999999999999
Q ss_pred HHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 322 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 322 ~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
+||++||+||+++..+.|++||.+++|.+++++|+.|||+++.
T Consensus 228 ~LL~~L~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~ 270 (279)
T 1hg4_A 228 QLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEAPP 270 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCBCSSCHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCcHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999874
No 72
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.61 E-value=6.9e-16 Score=141.88 Aligned_cols=110 Identities=17% Similarity=0.259 Sum_probs=98.7
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcC
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 318 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~ 318 (367)
.+..+...++.+..+..|+++++.+.- .+||++|+.+..+|+++|+++..||.+|+..+||+++.
T Consensus 155 ~i~~~~~~l~~L~ld~~E~~lLkAivL---------------~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~ 219 (267)
T 3ilz_A 155 AIFELGKSLSAFNLDDTEVALLQAVLL---------------MSTDRSGLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPH 219 (267)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHH---------------SCCCSSSCSCHHHHHHHHHHHHHHHHHHHHHHTCSSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh---------------cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 344566778888889999998887642 24789999999999999999999999999999999999
Q ss_pred hHHHHHhhchhhhhhchhhHHHHHHhhhcCCCCh-HHHHHHHHhcc
Q psy6602 319 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI-QRLLGDMYTME 363 (367)
Q Consensus 319 r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i-~~ll~eml~~~ 363 (367)
||++||++||+||+++..++|++||.+++|.+++ ++|+.|||++.
T Consensus 220 Rf~~LL~~Lp~Lr~l~~~~~e~l~~~k~~~~~~~~~~Ll~Em~~~~ 265 (267)
T 3ilz_A 220 FWPKLLMKVTDLRMIGAXHASRFLHMKVEXPTELFPPLFLEVFEDQ 265 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCSSCGGGSCHHHHHHTCCS
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCccCCCcHHHHHhcCC
Confidence 9999999999999999999999999999999998 99999999875
No 73
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=99.61 E-value=9.4e-16 Score=143.53 Aligned_cols=113 Identities=17% Similarity=0.206 Sum_probs=102.2
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCC
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ 316 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~ 316 (367)
+..+..+...++.+..+..|+++++.++- .++|++||.+...|+++|+++..||.+|+..+||++
T Consensus 154 ~~~i~~~~~~l~~L~ld~~E~~lLkAivL---------------~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~ 218 (303)
T 1xdk_B 154 TDLVFTFANQLLPLEMDDTETGLLSAICL---------------ICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSK 218 (303)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHH---------------SCSCSSSCSSHHHHHHHTHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---------------hCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34455567788899999999999887642 247899999999999999999999999999999999
Q ss_pred cChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 317 PTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 317 ~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
+.||++||++||+||+++..++|++||.+++|.+++++||.|||+++.
T Consensus 219 ~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~ 266 (303)
T 1xdk_B 219 PHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSE 266 (303)
T ss_dssp TTHHHHHHTHHHHHHHHHHHHHHHHHHHTTTCSSCCCHHHHHHHCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999764
No 74
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.61 E-value=5e-16 Score=140.19 Aligned_cols=108 Identities=30% Similarity=0.516 Sum_probs=99.1
Q ss_pred HhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcChHH
Q psy6602 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFG 321 (367)
Q Consensus 242 ~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~r~~ 321 (367)
.+...++.+..+..|+++++...- .+||++|+.+...|+++|+++..+|.+|+..+||+++.||+
T Consensus 126 ~~~~~l~~L~ld~~E~~lLkaivL---------------~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~ 190 (235)
T 2nxx_A 126 ELVNKMKEMKMDKTELGCLRAIIL---------------YNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFA 190 (235)
T ss_dssp HTHHHHHHHTCCHHHHHHHHHHHH---------------CCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH---------------hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHH
Confidence 467788999999999999987752 24789999999999999999999999999999999999999
Q ss_pred HHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 322 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 322 ~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
+||++||+||+++..++|++||.+++|.+|+++|+.|||+++.
T Consensus 191 ~LL~~L~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~eml~~~~ 233 (235)
T 2nxx_A 191 KLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEGTT 233 (235)
T ss_dssp HHHTHHHHHHHHHHTCCSCTTTTSSSSCCCHHHHHHHHTTC--
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999874
No 75
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.60 E-value=1.8e-15 Score=136.26 Aligned_cols=111 Identities=19% Similarity=0.242 Sum_probs=99.7
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCC
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ 316 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~ 316 (367)
...+..+...++.+..+..|+++++.+.- .+||++|+.+...|+++|+++..||.+|+..+||++
T Consensus 122 ~~~i~~~~~~l~~L~ld~~E~~lLkaivL---------------~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~ 186 (232)
T 1osh_A 122 ITPMFSFYKSIGELKMTQEEYALLTAIVI---------------LSPDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPEN 186 (232)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHH---------------TCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHH---------------hCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 44555567889999999999999887642 247899999999999999999999999999999999
Q ss_pred cChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcc
Q psy6602 317 PTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 363 (367)
Q Consensus 317 ~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~ 363 (367)
+.||++||++||+||+++..+.|.+||.++ |.+++++|+.|||+.+
T Consensus 187 ~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~k~-~~~~~~~Ll~Em~~~~ 232 (232)
T 1osh_A 187 PQHFACLLGRLTELRTFNHHHAEMLMSWRV-NDHKFTPLLCEIWDVQ 232 (232)
T ss_dssp TTHHHHHHHHHHHHHTHHHHHHHHHHHHHH-TTCCCCHHHHHHHTC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCChHHHHHhcCC
Confidence 999999999999999999999999999997 7999999999999864
No 76
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.60 E-value=1.5e-15 Score=139.74 Aligned_cols=109 Identities=22% Similarity=0.311 Sum_probs=97.4
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcC
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPT 318 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~ 318 (367)
.+..+...++.+..+..|+++++.+.- .+||++|+.+...|+++|+++..||.+|+..+||+++.
T Consensus 159 ~l~~~~~~l~~L~ld~~E~alLkAIvL---------------fnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~ 223 (269)
T 3u9q_A 159 PKFEFAVKFNALELDDSDLAIFIAVII---------------LSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQ 223 (269)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHH---------------TCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHH---------------hCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 345566788889999999999887752 24789999999999999999999999999999999999
Q ss_pred hHHHHHhhchhhhhhchhhHHHHH-HhhhcCCCChHHHHHHHHhc
Q psy6602 319 RFGRLLLMLPSLRAVRQSTIERLF-FKETIGDIPIQRLLGDMYTM 362 (367)
Q Consensus 319 r~~~lLl~Lp~lr~i~~~~~e~l~-~~~~~g~~~i~~ll~eml~~ 362 (367)
||++||++||+||+++..+++.++ |++..|++|+++||.|||+.
T Consensus 224 Rf~kLL~~Lp~LR~i~~~~~~~l~~~k~~~~~~~~~~Ll~Em~~~ 268 (269)
T 3u9q_A 224 LFAKLLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYKD 268 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHSC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCCCcCHHHHHHHhh
Confidence 999999999999999999999996 55678999999999999963
No 77
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=99.60 E-value=1.4e-15 Score=137.70 Aligned_cols=109 Identities=29% Similarity=0.524 Sum_probs=99.6
Q ss_pred HhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcChHH
Q psy6602 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFG 321 (367)
Q Consensus 242 ~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~r~~ 321 (367)
.+...++.+..+..|+++++..+- .++|++|+.+..+|+++|+++..+|.+|+..+||+++.||+
T Consensus 130 ~~~~~l~~L~ld~~E~~~Lkai~l---------------~~pd~~gl~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~ 194 (240)
T 2p1t_A 130 ELVSKMRDMQMDKTELGCLRAIVL---------------FNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFA 194 (240)
T ss_dssp HTHHHHHHTTCCHHHHHHHHHHHH---------------SCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHH---------------hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHH
Confidence 466788999999999999887752 24789999999999999999999999999999999999999
Q ss_pred HHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcccc
Q psy6602 322 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 365 (367)
Q Consensus 322 ~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~~ 365 (367)
+||++||+||+++.+++|++|+.+++|.+|+++|+.|||+++..
T Consensus 195 ~LL~~l~~Lr~~~~~~~e~l~~~~~~~~~~~~~ll~eml~~~~~ 238 (240)
T 2p1t_A 195 KLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQ 238 (240)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHCCSCCCHHHHHHTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCCCCchHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999998753
No 78
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.60 E-value=1.4e-15 Score=148.36 Aligned_cols=148 Identities=20% Similarity=0.248 Sum_probs=113.0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhhCC-Cc------c---h-------------HHHHHHHhhhHhHhhhhhHHH
Q psy6602 200 PETPGLVDAQPVEMLQDQAQCILGDYVRGRYS-RQ------P---T-------------RFGRLLLMLPSLRAVRQSTIE 256 (367)
Q Consensus 200 pd~~~L~~~~~v~~~q~~~~~~L~~y~~~~~~-~~------~---~-------------Rf~~LL~~l~~Lr~l~~~~~e 256 (367)
|....|...++|.-++.-..+.+.-.+...+. ++ . . -+..+..+...++.+..+..|
T Consensus 246 P~F~~L~~~DQi~LLk~~w~Ell~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~~~l~~L~ld~~E 325 (419)
T 3dzy_D 246 PGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSD 325 (419)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHHHHHHHGGGBCSSEEEEGGGTEEEEHHHHHSSSGGGSGGGHHHHHHHHHHHHTCCCHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeecCcccccHHHHHhhhhhHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 44455555777777777666665543333221 11 0 0 112233455667777777777
Q ss_pred HHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcChHHHHHhhchhhhhhchh
Q psy6602 257 RLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQS 336 (367)
Q Consensus 257 ~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~r~~~lLl~Lp~lr~i~~~ 336 (367)
+.+++.+.- .++|++||++..+|+++|++++.||++|+..+||+++.||+|||++||+||+|+..
T Consensus 326 ~alLkAivL---------------f~pD~~gL~~~~~Ve~lQe~~~~aL~~yi~~~~p~~~~rf~kLLl~Lp~LR~i~~~ 390 (419)
T 3dzy_D 326 LAIFIAVII---------------LSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTE 390 (419)
T ss_dssp HHHHHHHHH---------------SCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------hCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHH
Confidence 777776542 25899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHH-HhhhcCCCChHHHHHHHHhc
Q psy6602 337 TIERLF-FKETIGDIPIQRLLGDMYTM 362 (367)
Q Consensus 337 ~~e~l~-~~~~~g~~~i~~ll~eml~~ 362 (367)
+++.++ |++..|++++++||.|||+.
T Consensus 391 ~~~~l~~~k~~~~~~~l~~Ll~Em~~d 417 (419)
T 3dzy_D 391 HVQLLQVIKKTETDMSLHPLLQEIYKD 417 (419)
T ss_dssp HHHHHHHHTTSCSCCCCCHHHHHHHTT
T ss_pred HHHHHHHhhccCCCCCccHHHHHHHHh
Confidence 999995 55678999999999999974
No 79
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.58 E-value=1.1e-15 Score=138.45 Aligned_cols=111 Identities=21% Similarity=0.224 Sum_probs=95.1
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCC-------CchhhhhHHHHHHHHHHHHHh
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVD-------AQPVEMLQDQAQCILGDYVRG 311 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~-------~~~ve~lq~~~~~aL~~~~~~ 311 (367)
.+......++.+..+..|+++++...- .+||++|+.+ ..+|+.+|+++..||.+|+..
T Consensus 119 ~l~~~~~~l~~L~ld~~E~~lLkAivL---------------~~pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~ 183 (240)
T 3oll_A 119 MLLATTSRFRELKLQHKEYLCVKAMIL---------------LNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAK 183 (240)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH---------------HCSCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH---------------cCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566778888999999999887642 2367777765 346889999999999999987
Q ss_pred h---CCCCcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 312 R---YSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 312 ~---~p~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
+ ||+++.||++||++||+||+++.+++|++||++++|.+|+++||.|||++|+
T Consensus 184 ~~~~~~~~~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~eml~~~~ 239 (240)
T 3oll_A 184 SGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHV 239 (240)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHC-
T ss_pred cCCCCcchhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccc
Confidence 6 4778999999999999999999999999999999999999999999999985
No 80
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=99.58 E-value=3.8e-15 Score=138.05 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=99.5
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCC
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ 316 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~ 316 (367)
...+..+...++.+..+..|+++++.++- .+||++||.+...|+++|+++..||.+|+..+||++
T Consensus 172 ~~~l~~~~~~l~~L~ld~~E~~lLkAIvL---------------~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~ 236 (283)
T 3ipq_A 172 INPIFEFSRAMNELQLNDAEFALLIAISI---------------FSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHD 236 (283)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHH---------------TCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 34455677788899999999999887752 247899999999999999999999999999999999
Q ss_pred cChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcc
Q psy6602 317 PTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 363 (367)
Q Consensus 317 ~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~ 363 (367)
+.||++||++||+||+++.+++|++||.+++|. ++++|+.|||+.+
T Consensus 237 ~~Rf~~LL~~Lp~Lr~l~~~~~e~l~~~k~~~~-~~~~Ll~Em~~~~ 282 (283)
T 3ipq_A 237 RLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDK-KLPPLLSEIWDVH 282 (283)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHCC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCChHHHHHhcCC
Confidence 999999999999999999999999999999975 9999999999865
No 81
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.57 E-value=1.9e-15 Score=137.88 Aligned_cols=110 Identities=17% Similarity=0.267 Sum_probs=99.1
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCC--
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYS-- 314 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p-- 314 (367)
+..+..+...++.+..+..|+++++.+.- .+||++|+.+...|+++|+++..||.+|+..+||
T Consensus 141 ~~~l~~~~~~l~~L~ld~~E~~lLkAivL---------------~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~ 205 (254)
T 3b0t_A 141 IEPLIKFQVGLKKLNLHEEEHVLLMAICI---------------VSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPP 205 (254)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHH---------------SCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCccCCcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455677888999999999999887752 3478999999999999999999999999999999
Q ss_pred CCcChHHHHHhhchhhhhhchhhHHHHHHhhh--cCCCChHHHHHHHHh
Q psy6602 315 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKET--IGDIPIQRLLGDMYT 361 (367)
Q Consensus 315 ~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~--~g~~~i~~ll~eml~ 361 (367)
+++.||++||++||+||+++..++|++||.++ .|.+++++|+.|||+
T Consensus 206 ~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Em~~ 254 (254)
T 3b0t_A 206 GSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLEVFG 254 (254)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCHHHHHHHC
T ss_pred CchhHHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCCChHHHHhcC
Confidence 78999999999999999999999999999999 778899999999984
No 82
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.57 E-value=2.9e-15 Score=135.83 Aligned_cols=110 Identities=23% Similarity=0.292 Sum_probs=98.3
Q ss_pred HHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCC--C
Q psy6602 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYS--R 315 (367)
Q Consensus 238 ~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p--~ 315 (367)
..+......++.+..+..|+++++...- | + |++|+.+...|+++|+++..||.+|+..+|| +
T Consensus 130 ~~l~~~~~~l~~L~ld~~E~~lLkAIvL-----------f----n-d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~ 193 (244)
T 1pdu_A 130 NDIMEFSRSLHNLEIDISAFACLCALTL-----------I----T-ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQK 193 (244)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------S----S-CCTTCSCHHHHHHHHHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------h----C-CCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3455677788899999999999887651 1 1 6899999999999999999999999999987 5
Q ss_pred CcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcc
Q psy6602 316 QPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 363 (367)
Q Consensus 316 ~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~ 363 (367)
++.||++||++||+||+++.+++|++||.+++|.+|+++|+.||+.+.
T Consensus 194 ~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~ 241 (244)
T 1pdu_A 194 KQHYFSRLLGKLPELRSLSVQGLQRIFYLKLEDLVPAPALIENMFVTT 241 (244)
T ss_dssp STTHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHTTTCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHhCC
Confidence 889999999999999999999999999999999999999999999763
No 83
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.56 E-value=4.1e-15 Score=139.02 Aligned_cols=112 Identities=17% Similarity=0.253 Sum_probs=101.5
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCC
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ 316 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~ 316 (367)
+..+..+...++.+..+..|+++++.++- .+||++||.+...|+++|+++..||.+|+..+||++
T Consensus 187 ~~~l~~~~~~l~~L~ld~~E~alLkAIvL---------------fnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~ 251 (302)
T 2hc4_A 187 LEPLVKFQVGLKKLKLHEEEHVLLMAICL---------------LSPDRPGVQDHVRIEALQDRLCDVLQAYIRIQHPGG 251 (302)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHH---------------TCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCCh
Confidence 34555677789999999999999987752 247899999999999999999999999999999999
Q ss_pred cChHHHHHhhchhhhhhchhhHHHHHHhhhcCC--CChHHHHHHHHhcc
Q psy6602 317 PTRFGRLLLMLPSLRAVRQSTIERLFFKETIGD--IPIQRLLGDMYTME 363 (367)
Q Consensus 317 ~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~--~~i~~ll~eml~~~ 363 (367)
+.||++||++||+||+++..++|++|+.+++|. +++++|+.|||+++
T Consensus 252 ~~RF~~LLl~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Em~~~~ 300 (302)
T 2hc4_A 252 RLLYAKMIQKLADLRSLNEEHSKQYRSLSFQPEHSMQLTPLVLEVFGSE 300 (302)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHSSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccHHHHHHHcCC
Confidence 999999999999999999999999999999875 89999999999876
No 84
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.55 E-value=5e-15 Score=138.96 Aligned_cols=108 Identities=19% Similarity=0.298 Sum_probs=97.8
Q ss_pred HHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCC--CCc
Q psy6602 240 LLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYS--RQP 317 (367)
Q Consensus 240 LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p--~~~ 317 (367)
+..+...++.+..+..|+++++.++- .+||++||.+...|+++|+++..||.+|+..+|| +++
T Consensus 205 i~~~~~~l~~L~ld~~E~alLkAIvL---------------fnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~~ 269 (316)
T 1nrl_A 205 MLKFHYMLKKLQLHEEEYVLMQAISL---------------FSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHR 269 (316)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHH---------------TCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCCSGGGT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH---------------hCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 34456778888899999998887652 3478999999999999999999999999999999 789
Q ss_pred ChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcc
Q psy6602 318 TRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 363 (367)
Q Consensus 318 ~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~ 363 (367)
.||++||++||+||+++..++|++||.+.+|. ++++||.|||+++
T Consensus 270 ~RF~kLLl~Lp~LR~l~~~~~e~l~~~k~~~~-~i~~Ll~Eml~~~ 314 (316)
T 1nrl_A 270 FLFLKIMAMLTELRSINAQHTQRLLRIQDIHP-FATPLMQELFGIT 314 (316)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHcCC
Confidence 99999999999999999999999999999988 9999999999876
No 85
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=99.55 E-value=2.9e-15 Score=138.80 Aligned_cols=109 Identities=29% Similarity=0.524 Sum_probs=99.8
Q ss_pred HhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcChHH
Q psy6602 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFG 321 (367)
Q Consensus 242 ~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~r~~ 321 (367)
.+...++.+..+..|+++++.++- .++|++|+.+..+|+.+|+++..+|.+|+..+||+++.||+
T Consensus 172 ~~~~~l~~L~ld~~E~~lLkaivL---------------~~pd~~gLs~~~~v~~lq~~~~~~L~~y~~~~~~~~~~Rf~ 236 (282)
T 1lbd_A 172 ELVSKMRDMQMDKTELGCLRAIVL---------------FNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFA 236 (282)
T ss_dssp HHHHHTTTTCCCHHHHHHHHHHHH---------------SCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHSCCSTTTHH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHH---------------cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHH
Confidence 366778888999999998887642 34789999999999999999999999999999999999999
Q ss_pred HHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcccc
Q psy6602 322 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 365 (367)
Q Consensus 322 ~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~~ 365 (367)
+||++||+||+++.+++|++||.+++|.+|+++||.|||+++..
T Consensus 237 ~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~i~~ll~eml~~~~~ 280 (282)
T 1lbd_A 237 KLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQ 280 (282)
T ss_dssp HHHTTHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999998753
No 86
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.55 E-value=6.1e-15 Score=133.79 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=97.3
Q ss_pred HHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCc
Q psy6602 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP 317 (367)
Q Consensus 238 ~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~ 317 (367)
..+..+...++.+..+..|+++++...- .+||++|+.+...|+++|+++..||.+|+..+||+++
T Consensus 133 ~~i~~~~~~l~~L~ld~~E~~lLkAivL---------------~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~ 197 (244)
T 1nq7_A 133 NEAFDFAKNLCSLQLTEEEIALFSSAVL---------------ISPDRAWLLEPRKVQKLQEKIYFALQHVIQKNHLDDE 197 (244)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHH---------------SCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCSCTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3445567788889999999999887752 3478999999999999999999999999999999998
Q ss_pred ChHHHHHhhchhhhhhchhhHHHHHHhhhcCCC----ChHHHHHHHHh
Q psy6602 318 TRFGRLLLMLPSLRAVRQSTIERLFFKETIGDI----PIQRLLGDMYT 361 (367)
Q Consensus 318 ~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~----~i~~ll~eml~ 361 (367)
||++||++||+||+++..+.|++||.+++|.. ++++|+.|||+
T Consensus 198 -Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~~~Ll~Em~~ 244 (244)
T 1nq7_A 198 -TLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLYKELFN 244 (244)
T ss_dssp -HHHHHHHTHHHHHHHHHHHHHHHHHHHHHCHHHHHHTSCHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCChHHHHhhC
Confidence 99999999999999999999999999999976 89999999984
No 87
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.54 E-value=7.2e-15 Score=136.75 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=100.7
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCC--
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYS-- 314 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p-- 314 (367)
+..+..+...++.+..+..|+++++.++- .+||++||.+...|+++|+++..||.+|+..+||
T Consensus 144 ~~~l~~~~~~l~~L~ld~~E~~lLkAIvL---------------fnpd~~gL~~~~~Ve~lq~~~~~aL~~y~~~~~p~~ 208 (292)
T 2o4j_A 144 IEPLIKFQVGLKKLNLHEEEHVLLMAICI---------------VSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPP 208 (292)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH---------------SCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455677788999999999999887752 2478999999999999999999999999999999
Q ss_pred CCcChHHHHHhhchhhhhhchhhHHHHHHhhhc--CCCChHHHHHHHHhccc
Q psy6602 315 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETI--GDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 315 ~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~--g~~~i~~ll~eml~~~~ 364 (367)
+++.||++||++||+||+++..++|++|+.+++ |.+++++|+.|||+++.
T Consensus 209 ~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Eml~~~~ 260 (292)
T 2o4j_A 209 GSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNEI 260 (292)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTTSCHHHHHHHCCC-
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHcCCc
Confidence 889999999999999999999999999999995 68899999999998763
No 88
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.54 E-value=2.9e-15 Score=139.69 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=94.6
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCC--------CCCCCCchhhhhHHHHHHHHHHH
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYET--------PGLVDAQPVEMLQDQAQCILGDY 308 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~--------~gl~~~~~ve~lq~~~~~aL~~~ 308 (367)
+..+..+...++.+..+..|+++++.++- | ++|+ +|+++...|+++|+++..||.+|
T Consensus 128 ~~~l~~~~~~l~~L~ld~~Ey~lLkAIvL-----------f----npd~~~LS~~~~~gL~~~~~ve~lqe~~~~aL~~y 192 (298)
T 2ocf_A 128 FDMLLATSSRFRMMNLQGEEFVCLKSIIL-----------L----NSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHL 192 (298)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH-----------H----HCSCCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhCcCHHHHHHHHHHHH-----------c----CCCccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 34455567789999999999999987752 1 1344 88999999999999999999999
Q ss_pred HHhhC---CCCcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcccc
Q psy6602 309 VRGRY---SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 365 (367)
Q Consensus 309 ~~~~~---p~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~~ 365 (367)
+..+| |+++.||++||++||+||+++.+++|++||++++|.+|+++||.|||++++.
T Consensus 193 ~~~~~~~~~~~~~RF~~LLl~Lp~Lr~i~~~~~e~l~~~kl~g~~~i~~Ll~Eml~~~~~ 252 (298)
T 2ocf_A 193 MAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHRL 252 (298)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTTC-
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHcCCCc
Confidence 99874 6788999999999999999999999999999999999999999999998753
No 89
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=99.54 E-value=8.2e-15 Score=134.63 Aligned_cols=111 Identities=16% Similarity=0.232 Sum_probs=98.3
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhC---
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRY--- 313 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~--- 313 (367)
+..+..+...++.+..+..|+++++.+.- .+ |++|+.+...|+++|+++..||.+|+..+|
T Consensus 151 ~~~l~~~~~~l~~L~ld~~E~~lLkAivL---------------~n-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~ 214 (266)
T 2r40_D 151 IEDLLHFCRCMYSMMMDNVHYALLTAIVI---------------FS-DRPGLEQPLLVEEIQRYYLNTLRVYILNQNSAS 214 (266)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHH---------------TS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHhhhee---------------ec-CCCCCcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455567788999999999998887651 12 789999999999999999999999999999
Q ss_pred CCCcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 314 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 314 p~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
|+++.||++||++||+||+++.+++|++|+.+++| +++++|+.|||+.+.
T Consensus 215 ~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~-~~~~~Ll~Em~~~~~ 264 (266)
T 2r40_D 215 PRCAVIFGKILGILTEIRTLGMQNSNMCISLKLKN-RKLPPFLEEIWDVAD 264 (266)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHTTCC-
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHhCCCC
Confidence 88899999999999999999999999999999999 699999999998764
No 90
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.53 E-value=1.8e-15 Score=137.63 Aligned_cols=114 Identities=19% Similarity=0.232 Sum_probs=98.3
Q ss_pred HHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCC--------CCCCCCchhhhhHHHHHHHHHHHH
Q psy6602 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYET--------PGLVDAQPVEMLQDQAQCILGDYV 309 (367)
Q Consensus 238 ~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~--------~gl~~~~~ve~lq~~~~~aL~~~~ 309 (367)
..+..+...++.+..+..|+++++.+.- | ++|+ +|+++...|+++|+++..||.+|+
T Consensus 120 ~~l~~~~~~l~~L~ld~~E~~lLkAivL-----------~----~pd~~~ls~~~~~gl~~~~~v~~lq~~~~~aL~~y~ 184 (248)
T 1xpc_A 120 DMLLATSSRFRMMNLQGEEFVCLKSIIL-----------L----NSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLM 184 (248)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH-----------H----HTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH-----------c----CCcccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 4455567788899999999999887752 1 1333 677788899999999999999999
Q ss_pred HhhC---CCCcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccccC
Q psy6602 310 RGRY---SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSY 366 (367)
Q Consensus 310 ~~~~---p~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~~~ 366 (367)
..+| |+++.||++||++||+||+++..++|++||.+++|.+|+++|+.|||++++.+
T Consensus 185 ~~~~~~~~~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~~~ 244 (248)
T 1xpc_A 185 AKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHRLH 244 (248)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSSCHHHHHHHHHSCCSTT
T ss_pred HccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCccC
Confidence 9875 57889999999999999999999999999999999999999999999998654
No 91
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.53 E-value=1e-14 Score=132.49 Aligned_cols=106 Identities=21% Similarity=0.329 Sum_probs=93.9
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHh--hCCCC
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRG--RYSRQ 316 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~--~~p~~ 316 (367)
.+..+...++.+..+..|+++++...- .+||++|+.+...|+++|+++..||.+|+.. .+|++
T Consensus 139 ~i~~~~~~l~~L~ld~~E~~lLkAivL---------------~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~ 203 (246)
T 1xvp_B 139 LLFHFHGTLRKLQLQEPEYVLLAAMAL---------------FSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRD 203 (246)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHH---------------SCSSSTTCSCHHHHHHHHHHHHHHHHHHHHTCSSCCSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---------------cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 344556778899999999999887752 2479999999999999999999999999994 47889
Q ss_pred cChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHh
Q psy6602 317 PTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 361 (367)
Q Consensus 317 ~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~ 361 (367)
+.||++||++||+||+++..++|++|+. +|.+|+++||.|||+
T Consensus 204 ~~rf~~LL~~L~~Lr~i~~~~~e~l~~~--~~~~~~~~Ll~Em~~ 246 (246)
T 1xvp_B 204 RFLYAKLLGLLAELRSINEAYGYQIQHI--QGLSAMMPLLQEICS 246 (246)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHS--TTHHHHCHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCccHHHHHhcC
Confidence 9999999999999999999999999995 699999999999984
No 92
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.53 E-value=4.1e-15 Score=136.78 Aligned_cols=113 Identities=20% Similarity=0.216 Sum_probs=94.6
Q ss_pred HHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCC-------CCchhhhhHHHHHHHHHHHHH
Q psy6602 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLV-------DAQPVEMLQDQAQCILGDYVR 310 (367)
Q Consensus 238 ~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~-------~~~~ve~lq~~~~~aL~~~~~ 310 (367)
..+..+...++.+..+..|+++++.++- .++|++|+. +...|+++|+++..||.+|+.
T Consensus 116 ~~l~~~~~~l~~L~ld~~E~~lLkAIvL---------------fnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~ 180 (268)
T 1yye_A 116 DMLLATTSRFRELKLQHKEYLCVKAMIL---------------LNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIA 180 (268)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH---------------HTCCC----------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------cCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566788899999999999987752 236677765 467899999999999999999
Q ss_pred hh---CCCCcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcccc
Q psy6602 311 GR---YSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKS 365 (367)
Q Consensus 311 ~~---~p~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~~ 365 (367)
.+ ||+++.||++||++||+||+++.+++|++||++++|.+|+++|+.|||+++..
T Consensus 181 ~~~~~~~~~~~Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~~ 238 (268)
T 1yye_A 181 KSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHVL 238 (268)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHC
T ss_pred hcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCccc
Confidence 87 47788999999999999999999999999999999999999999999998753
No 93
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.52 E-value=9.2e-15 Score=134.52 Aligned_cols=110 Identities=19% Similarity=0.198 Sum_probs=95.5
Q ss_pred HHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCc
Q psy6602 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP 317 (367)
Q Consensus 238 ~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~ 317 (367)
..+..+...++.+..+..|+++++.+.- .+||++|+.+...|+++|+++..||.+|+..+|| ++
T Consensus 148 ~~i~~~~~~l~~L~ld~~E~~lLkAivL---------------fnpd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~-~~ 211 (270)
T 1n83_A 148 SFVFEFGKSLCSMHLTEDEIALFSAFVL---------------MSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHR-ED 211 (270)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHH---------------SCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHCT-TS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------hCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-ch
Confidence 3444566778888889999998887642 3478999999999999999999999999999998 68
Q ss_pred ChHHHHHhhchhhhhhchhhHHHHHHhhhcCC----CChHHHHHHHHhcc
Q psy6602 318 TRFGRLLLMLPSLRAVRQSTIERLFFKETIGD----IPIQRLLGDMYTME 363 (367)
Q Consensus 318 ~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~----~~i~~ll~eml~~~ 363 (367)
.||++||++||+||+++.+++|++|+.+++|. +++++|+.|||+++
T Consensus 212 ~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~~~Ll~Em~~~~ 261 (270)
T 1n83_A 212 GILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSE 261 (270)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCcCHHHHHHhCCC
Confidence 99999999999999999999999999999986 58999999999876
No 94
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.50 E-value=7.7e-15 Score=135.13 Aligned_cols=113 Identities=21% Similarity=0.219 Sum_probs=94.3
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCC-------chhhhhHHHHHHHHHHHHHh
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDA-------QPVEMLQDQAQCILGDYVRG 311 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~-------~~ve~lq~~~~~aL~~~~~~ 311 (367)
.+..+...++.+..+..|+++++.++- | +||++|+.+. ..|+++|+++..||.+|+..
T Consensus 145 ~l~~~~~~l~~L~ld~~E~~lLkAIvL-----------f----npd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~ 209 (271)
T 1l2j_A 145 MLLATTSRFRELKLQHKEYLCVKAMIL-----------L----NSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAK 209 (271)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH-----------H----HC----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH-----------c----CCCcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566788999999999999987752 1 3567777663 46888999999999999988
Q ss_pred h---CCCCcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccccC
Q psy6602 312 R---YSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSY 366 (367)
Q Consensus 312 ~---~p~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~~~ 366 (367)
+ +|+++.||++||++||+||+++..++|++||.+++|.+|+++|+.|||++++.+
T Consensus 210 ~~~~~~~~~~Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~~~ 267 (271)
T 1l2j_A 210 SGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHVLR 267 (271)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSSCCHHHHHHHHHHHHTTC
T ss_pred cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHcCCccc
Confidence 6 477899999999999999999999999999999999999999999999988654
No 95
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.47 E-value=1.1e-13 Score=127.47 Aligned_cols=110 Identities=19% Similarity=0.267 Sum_probs=97.4
Q ss_pred HHHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhh--C
Q psy6602 236 RFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGR--Y 313 (367)
Q Consensus 236 Rf~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~--~ 313 (367)
-+..+..+...++.+..+..|+++++.+.- | + +++|+.+...|+++|+++..||.+|+..+ +
T Consensus 155 ~~~~l~~~~~~l~~L~ld~~E~~lLkAivL-----------~----~-~~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~ 218 (271)
T 1ovl_A 155 WIDSIVEFSSNLQNMNIDISAFSCIAALAM-----------V----T-ERHGLKEPKRVEELQNKIVNCLKDHVTFNNGG 218 (271)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-----------S----S-CCTTCSCHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------h----C-CCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344556678889999999999999987651 1 1 47899999999999999999999999987 4
Q ss_pred CCCcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHh
Q psy6602 314 SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 361 (367)
Q Consensus 314 p~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~ 361 (367)
|+++.||++||++||+||+++.+++|++||.+++|.+|+++|+.||+.
T Consensus 219 ~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~el~~ 266 (271)
T 1ovl_A 219 LNRPNYLSKLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLFL 266 (271)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 788999999999999999999999999999999999999999999885
No 96
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.47 E-value=6.6e-14 Score=127.25 Aligned_cols=111 Identities=23% Similarity=0.345 Sum_probs=97.4
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhC-CC
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRY-SR 315 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~-p~ 315 (367)
+..+......++.+..+..|+++++.+.- | + |++|+.+...|+++|+++..||.+|+..+| |+
T Consensus 135 ~~~i~~~~~~l~~L~ld~~E~~lLkAivL-----------~----~-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~ 198 (248)
T 2nxx_E 135 IEDLLHFCRTMYSMRVDNAEYALLTAIVI-----------F----S-ERPALIEGWKVEKIQEIYLEALRAYVDNRRKPK 198 (248)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH-----------T----C-CCSSCTTHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------c----C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34455667788999999999998886641 1 1 789999999999999999999999999999 45
Q ss_pred CcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhccc
Q psy6602 316 QPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEK 364 (367)
Q Consensus 316 ~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~~ 364 (367)
++.||++||++||+||+++.++.|++|+.++.| +++++|+.|||+.+.
T Consensus 199 ~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~-~~~~~Ll~Em~~~~~ 246 (248)
T 2nxx_E 199 PGTIFAKLLSVLTELRTLGNQNSEMCFSLKLKN-KKLPPFLAEIWDVDL 246 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHTTTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCccHHHHHHhcCcC
Confidence 789999999999999999999999999999987 599999999999873
No 97
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.46 E-value=1.4e-13 Score=124.04 Aligned_cols=107 Identities=28% Similarity=0.424 Sum_probs=98.1
Q ss_pred HhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCcChHH
Q psy6602 242 LMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFG 321 (367)
Q Consensus 242 ~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~~r~~ 321 (367)
.++..++.+..+..|+++++...- .+++++|+.+...|+++|+.+..+|.+|+..+||+.+.||+
T Consensus 130 ~l~~~l~~L~ld~~E~~~L~ai~l---------------~~~~~~~l~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~ 194 (237)
T 1pzl_A 130 ELVLPFQELQIDDNEYAYLKAIIF---------------FDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFG 194 (237)
T ss_dssp HTHHHHHHHTCCHHHHHHHHHHHH---------------CCTTCTTCSCHHHHHHHHHHHHHHHHHHHHSSSSCCTTHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHH---------------hCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCChhhHHH
Confidence 456678888999999999887652 24789999999999999999999999999999999999999
Q ss_pred HHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcc
Q psy6602 322 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 363 (367)
Q Consensus 322 ~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~ 363 (367)
+||++||+||+++..+.|++++.+++|.+++++|+.||+++.
T Consensus 195 ~LL~~l~~lr~~~~~~~e~l~~~~~~~~~~~~~l~~em~~~~ 236 (237)
T 1pzl_A 195 ELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGG 236 (237)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhCCCcHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999875
No 98
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.46 E-value=2.5e-14 Score=130.01 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=94.4
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCC
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ 316 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~ 316 (367)
+..+......++.+..+..|+++++...- .+||++||.+..+|+++|+++..||.+|+..+||
T Consensus 138 ~~~l~~~~~~l~~L~ld~~E~~lLkAivL---------------fnpd~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~-- 200 (248)
T 3l0l_A 138 ISSIFDFSHSLSALHFSEDEIALYTALVL---------------INAHRPGLQEKRKVEQLQYNLELAFHHHLCKTHR-- 200 (248)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHH---------------SCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------HCCCCCCCccHHHHHHHHHHHHHHHHHHHHhhCh--
Confidence 34455677788888899999998887742 2479999999999999999999999999999986
Q ss_pred cChHHHHHhhchhhhhhchhhHHHHHHhhhcC----CCChHHHHHHHHh
Q psy6602 317 PTRFGRLLLMLPSLRAVRQSTIERLFFKETIG----DIPIQRLLGDMYT 361 (367)
Q Consensus 317 ~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g----~~~i~~ll~eml~ 361 (367)
+.||++||++ |+||+++++++|+|||.+++| ++++++|+.||+.
T Consensus 201 ~~rf~~LLl~-p~LR~i~~~~~e~l~~~k~~~p~~~~~~~p~Ll~Emf~ 248 (248)
T 3l0l_A 201 QSILAKLPPK-GKLRSLCSQHVERLQIFQHLHPIVVQAAFPPLYKELFS 248 (248)
T ss_dssp GGGGGGSCCT-THHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHC
T ss_pred HHHHHHhhcc-HHHHHHHHHHHHHHHHHHhhCcccccCCCChHHHHhhC
Confidence 5799999999 999999999999999999999 4789999999983
No 99
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=99.45 E-value=1e-13 Score=129.85 Aligned_cols=110 Identities=23% Similarity=0.312 Sum_probs=96.8
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhC-CC
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRY-SR 315 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~-p~ 315 (367)
+..+..+...++.+..+..|+++++.++- | + |++||.+...|+.+|+++..||.+|+..+| |+
T Consensus 199 ~~~i~~~~~~l~~L~ld~~E~alLkAIvL-----------f----~-d~~gL~~~~~Ve~lqe~~~~aL~~y~~~~~~~~ 262 (310)
T 1z5x_E 199 VEDLLRFCRHMCAMKVDNAEYALLTAIVI-----------F----S-ERPSLSEGWKVEKIQEIYIEALKAYVENRRKPY 262 (310)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHH-----------T----C-CCTTCTTHHHHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------c----C-CCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 34455567788899999999998886651 1 2 789999999999999999999999999998 66
Q ss_pred CcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcc
Q psy6602 316 QPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 363 (367)
Q Consensus 316 ~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~ 363 (367)
++.||++||++||+||+++..++|++||.++.|. ++++|+.|||+.+
T Consensus 263 ~~~RF~kLLl~Lp~LR~l~~~~~e~l~~~~~~~~-~~~~Ll~Eml~~~ 309 (310)
T 1z5x_E 263 ATTIFAKLLSVLTELRTLGNMNSETCFSLKLKNR-KVPSFLEEIWDVV 309 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHcCC
Confidence 8899999999999999999999999999999875 9999999999875
No 100
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.43 E-value=1e-13 Score=126.78 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=91.8
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCC-CCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCC-
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSY-ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ- 316 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~-d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~- 316 (367)
.+......++.+..+..|+++++...- .++ |++|+.+...|+++|+++..||.+|+..+||++
T Consensus 127 ~l~~~~~~l~~L~ld~~E~~lLkAIvL---------------fnp~d~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~ 191 (260)
T 3vhv_A 127 GMHQISLQFVRLQLTFEEYTIMKVLLL---------------LSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSG 191 (260)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH---------------TSEEETTCCTTHHHHHHHHHHHHHHHHHHHHC-----C
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---------------cCCcCCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344566778888899999999887642 236 899999999999999999999999999999977
Q ss_pred --cChHHHHHhhchhhhhhchhhHHHHHHhhh---cCCCChHHHHHHHHhcc
Q psy6602 317 --PTRFGRLLLMLPSLRAVRQSTIERLFFKET---IGDIPIQRLLGDMYTME 363 (367)
Q Consensus 317 --~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~---~g~~~i~~ll~eml~~~ 363 (367)
+.||++||++||+||+++.+++|++||... .+.+++++|+.|||..+
T Consensus 192 ~~~~RF~~LL~~Lp~Lr~l~~~~~e~lff~~~~~~~~~~~~p~Ll~Ei~~~~ 243 (260)
T 3vhv_A 192 QSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQ 243 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHhcc
Confidence 689999999999999999999999997664 57899999999999864
No 101
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=99.43 E-value=2.2e-14 Score=129.86 Aligned_cols=106 Identities=15% Similarity=0.221 Sum_probs=87.0
Q ss_pred HHHhhhHhHh-hhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCC---chhhhhHHHHHHHHHHHHHhhC-C
Q psy6602 240 LLLMLPSLRA-VRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDA---QPVEMLQDQAQCILGDYVRGRY-S 314 (367)
Q Consensus 240 LL~~l~~Lr~-l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~---~~ve~lq~~~~~aL~~~~~~~~-p 314 (367)
+......++. +..+..|+++++...- .+|+ +|+.+. .+|+++|+++..||.+|+..+| |
T Consensus 133 l~~~~~~~~~~L~ld~~E~alLkAivL---------------fsp~-~gL~~~~~~~~Ve~lQe~~~~aL~~y~~~~~~p 196 (243)
T 3up3_A 133 FLQFFKIFHEDIRSNDLVISMIMLIVL---------------FSPR-DSITDPEDRRIIARHHEQFSALLNRYLESLYGD 196 (243)
T ss_dssp HHHHHHTSCHHHHTCHHHHHHHHHHHH---------------SCCC-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhh---------------cCCC-CCCCCcchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444555664 6677778877776541 1355 899876 7999999999999999998776 8
Q ss_pred CCcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHHHHHhcc
Q psy6602 315 RQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTME 363 (367)
Q Consensus 315 ~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~eml~~~ 363 (367)
+++.||++||++||+||+++. +.+++|+.++ ++.++++|+.|||+.+
T Consensus 197 ~~~~rf~kLL~~Lp~LR~i~~-~~e~lf~~k~-~~~~~~pLl~E~f~~~ 243 (243)
T 3up3_A 197 DAHQLNEQLPTALRMLREISA-SSGMLFLGTV-NTSEAEPLPREFFKVE 243 (243)
T ss_dssp GHHHHHHHHHHHHHHHHHHHH-TCTTTTTTSC-CGGGSCHHHHTTSCCC
T ss_pred ChhHHHHHHHHHHHHHHHHHH-HHHHHHhccc-CCCCCCcHHHHHhCCC
Confidence 899999999999999999999 9999999875 5679999999999753
No 102
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=99.38 E-value=1e-13 Score=125.29 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=72.2
Q ss_pred CCCCCCCC---CCchhhhhHHHHHHHHHHHHHhhC-CCCcChHHHHHhhchhhhhhchhhHHHHHHhhhcCCCChHHHHH
Q psy6602 282 SYETPGLV---DAQPVEMLQDQAQCILGDYVRGRY-SRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLG 357 (367)
Q Consensus 282 s~d~~gl~---~~~~ve~lq~~~~~aL~~~~~~~~-p~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~g~~~i~~ll~ 357 (367)
+||++||. +...|+++|++++.||++|+..+| |+++.||+|||++||+||+|+..+++ +|+. ..++.++++|+.
T Consensus 160 spDr~gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~~~p~~~~rf~kLL~~Lp~LR~i~~~~~~-lf~~-~~~~~~~~pLl~ 237 (244)
T 3gyt_A 160 DSKREGLVSQQDKETVEKLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAENAVT-LFLG-AGNTTEAASLPK 237 (244)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHTTTT-TTTT-SCCCTTSCTTGG
T ss_pred hccCCCCCccccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHh-ccCCccCCcHHH
Confidence 58999999 688999999999999999999888 78899999999999999999999999 7664 445778999999
Q ss_pred HHHhcc
Q psy6602 358 DMYTME 363 (367)
Q Consensus 358 eml~~~ 363 (367)
|||+..
T Consensus 238 Eif~~~ 243 (244)
T 3gyt_A 238 EFFATN 243 (244)
T ss_dssp GTSCCC
T ss_pred HHhCcC
Confidence 999754
No 103
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.35 E-value=5.7e-13 Score=123.84 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=90.6
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCC-CCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCC-
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSY-ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ- 316 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~-d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~- 316 (367)
.+..+...++.+..+..|+++++.+.- .++ |++||.+...|+++|+++..||.+|+..++|+.
T Consensus 161 ~l~~~~~~l~~L~ld~~EyalLkAIvL---------------fnp~d~~gL~~~~~Ve~lQe~~~~aL~~y~~~~~~~~~ 225 (294)
T 3vhu_A 161 GMHQISLQFVRLQLTFEEYTIMKVLLL---------------LSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKCPNNSG 225 (294)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH---------------TSEEETTCCTTHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH---------------hCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 344566778888999999999987752 236 899999999999999999999999999998876
Q ss_pred --cChHHHHHhhchhhhhhchhhHHHHHHhhh---cCCCChHHHHHHHHhcc
Q psy6602 317 --PTRFGRLLLMLPSLRAVRQSTIERLFFKET---IGDIPIQRLLGDMYTME 363 (367)
Q Consensus 317 --~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~---~g~~~i~~ll~eml~~~ 363 (367)
+.||++||++||+||+++.+++|++||... .+.+++++|+.|||..+
T Consensus 226 ~~~~RF~~LL~lLp~Lr~l~~~~~e~lff~~~q~~~~~~~~p~Ll~Ei~~~~ 277 (294)
T 3vhu_A 226 QSWQRFYQLTKLLDSMHDLVSDLLEFCFYTFRESHALKVEFPAMLVEIISDQ 277 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCCCHHHHHHHcCC
Confidence 789999999999999999999999997654 57889999999999864
No 104
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=99.35 E-value=8.1e-13 Score=116.00 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=85.2
Q ss_pred HHHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCC
Q psy6602 237 FGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQ 316 (367)
Q Consensus 237 f~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~ 316 (367)
+..+......++.+..+..|+++++...- .+||++|+.+...|+++|+++..+|.+|+..+||++
T Consensus 103 ~~~i~~~~~~~~~L~ld~~E~~lLkaivL---------------~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~ 167 (199)
T 3cqv_A 103 LNSMFEFSEKLNALQLSDEEMSLFTAVVL---------------VSADRSGIENVNSVEALQETLIRALRTLIMKNHPNE 167 (199)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHH---------------HTSCCTTCSCHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------hcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHCCCh
Confidence 44556677889999999999999887752 247899999999999999999999999999999999
Q ss_pred cChHHHHHhhchhhhhhchhhHHHHHHhhhc
Q psy6602 317 PTRFGRLLLMLPSLRAVRQSTIERLFFKETI 347 (367)
Q Consensus 317 ~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~ 347 (367)
+.||++||++||+||++++.++|++||.|++
T Consensus 168 ~~Rf~~LL~~L~~Lr~l~~~~~E~l~~~k~~ 198 (199)
T 3cqv_A 168 ASIFTKLLLKLPDLRSLNNMHSEELLAFKVH 198 (199)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999875
No 105
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.32 E-value=7.6e-13 Score=121.64 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=94.6
Q ss_pred HHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCC-CCCCCCCCchhhhhHHHHHHHHHHHHHhhC---C
Q psy6602 239 RLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSY-ETPGLVDAQPVEMLQDQAQCILGDYVRGRY---S 314 (367)
Q Consensus 239 ~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~-d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~---p 314 (367)
.+..+...++.+..+..|+++++.++- .++ +++||.+...|+++|+++..+|.+|+..++ |
T Consensus 136 ~i~~~~~~l~~L~ld~~E~~lLkAIvL---------------fnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~ 200 (269)
T 1t7r_A 136 RMRHLSQEFGWLQITPQEFLCMKALLL---------------FSIIPVDGLKNQKFFDELRMNYIKELDRIIACKRKNPT 200 (269)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH---------------TSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH---------------cCCCccCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 345567788999999999999987752 235 789999999999999999999999998875 5
Q ss_pred CCcChHHHHHhhchhhhhhchhhHHHHHHh--h-hcCCCChHHHHHHHHhcc
Q psy6602 315 RQPTRFGRLLLMLPSLRAVRQSTIERLFFK--E-TIGDIPIQRLLGDMYTME 363 (367)
Q Consensus 315 ~~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~--~-~~g~~~i~~ll~eml~~~ 363 (367)
+++.||++||++||+||+++..++|++|.. + ..|.+++++|+.|||...
T Consensus 201 ~~~~Rf~~LL~~L~~Lr~l~~~~~e~lf~~~~~~~~~~~~~~~Ll~E~~~~~ 252 (269)
T 1t7r_A 201 SCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSHMVSVDFPEMMAEIISVQ 252 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcChHHHHHHHHhCc
Confidence 678999999999999999999999999842 3 348999999999999854
No 106
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.32 E-value=1.3e-12 Score=119.60 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=97.1
Q ss_pred HHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCC-CCCCCCCCchhhhhHHHHHHHHHHHHHhhCCC-
Q psy6602 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSY-ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR- 315 (367)
Q Consensus 238 ~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~-d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~- 315 (367)
..+......++.+..+..|+++++.+.- .++ |++|+.+..+|+++|+++..||.+|+..+||+
T Consensus 128 ~~l~~~~~~l~~L~ld~~E~~lLkAIvL---------------~np~d~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~ 192 (261)
T 3mnp_A 128 KHMLFISTELQRLQVSYEEYLCMKTLLL---------------LSSVPKEGLKSQELFDEIRMTYIKELGKAIAKRGGNS 192 (261)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH---------------TSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------cCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3445667778999999999999987752 236 89999999999999999999999999999995
Q ss_pred --CcChHHHHHhhchhhhhhchhhHHHHHHhhhc--CCCChHHHHHHHHhcc
Q psy6602 316 --QPTRFGRLLLMLPSLRAVRQSTIERLFFKETI--GDIPIQRLLGDMYTME 363 (367)
Q Consensus 316 --~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~--g~~~i~~ll~eml~~~ 363 (367)
++.||++||++||+||+++..+.+++|+.++. +.+.+++|+.|||+.+
T Consensus 193 ~~~~~Rf~~LL~lL~~Lr~l~~~~~e~~f~~~~~~~~~~~~p~Ll~Ei~~~~ 244 (261)
T 3mnp_A 193 SQNWQRFYQLTKLLDSMHDVVENLLSYCFQTFLDKSMSIEFPEMLAEIITNQ 244 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCCCCCHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHhcc
Confidence 48999999999999999999999999988776 5778999999999853
No 107
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=118.60 Aligned_cols=94 Identities=23% Similarity=0.299 Sum_probs=83.3
Q ss_pred HHHHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCCCCCCCCCCchhhhhHHHHHHHHHHHHHhhCCCCc
Q psy6602 238 GRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP 317 (367)
Q Consensus 238 ~~LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~d~~gl~~~~~ve~lq~~~~~aL~~~~~~~~p~~~ 317 (367)
..+..+...++.+..+..|+++++.+.- .+||++|+.+...|+++|+++..||.+|+..+||+++
T Consensus 149 ~~i~~~~~~l~~L~ld~~E~~lLkAIvL---------------~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~ 213 (245)
T 3n00_A 149 SAMFDFSEKLNSLALTEEELGLFTAVVL---------------VSADRSGMENSASVEQLQETLLRALRALVLKNRPLET 213 (245)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHH---------------HTSCCTTCSSHHHHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------hCCCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 3445566778888888888888887642 2478999999999999999999999999999999999
Q ss_pred ChHHHHHhhchhhhhhchhhHHHHHHhhh
Q psy6602 318 TRFGRLLLMLPSLRAVRQSTIERLFFKET 346 (367)
Q Consensus 318 ~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~ 346 (367)
.||++||++||+||++++.++|+|||.|+
T Consensus 214 ~RF~~LLl~Lp~LR~l~~~~~E~L~~~k~ 242 (245)
T 3n00_A 214 SRFTKLLLKLPDLRTLNNMHSEKLLSFRV 242 (245)
T ss_dssp THHHHHHTHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999886
No 108
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.30 E-value=1.1e-12 Score=120.10 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=92.5
Q ss_pred HHHhhhHhHhhhhhHHHHHHhhhccCCchhHhHHHHHHcccCCC-CCCCCCCCchhhhhHHHHHHHHHHHHHhh---CCC
Q psy6602 240 LLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYTMEKSY-ETPGLVDAQPVEMLQDQAQCILGDYVRGR---YSR 315 (367)
Q Consensus 240 LL~~l~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~s~-d~~gl~~~~~ve~lq~~~~~aL~~~~~~~---~p~ 315 (367)
+..+...++.+..+..|+++++...- .++ |++|+++..+|+++|+++..||.+|+..+ +|+
T Consensus 129 i~~~~~~l~~L~ld~~E~~lLkAIvL---------------fnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~ 193 (261)
T 1sqn_A 129 MWQIPQEFVKLQVSQEEFLCMKVLLL---------------LNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVS 193 (261)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH---------------TSEECTTCCTTHHHHHHHHHHHHHHHHHHHHTTC-CHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH---------------cCCCcccccccHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 33456788889999999999987752 236 78999999999999999999999999874 577
Q ss_pred CcChHHHHHhhchhhhhhchhhHHHHHHhhhc-----CCCChHHHHHHHHhcc
Q psy6602 316 QPTRFGRLLLMLPSLRAVRQSTIERLFFKETI-----GDIPIQRLLGDMYTME 363 (367)
Q Consensus 316 ~~~r~~~lLl~Lp~lr~i~~~~~e~l~~~~~~-----g~~~i~~ll~eml~~~ 363 (367)
++.||++||++||+||+++..+ ++|+.+++ |.+++++|+.|||...
T Consensus 194 ~~~Rf~~LL~~L~~Lr~~~~~~--~~~~~~~~~q~~~~~~~~~~Ll~Ei~~~~ 244 (261)
T 1sqn_A 194 SSQRFYQLTKLLDNLHDLVKQL--HLYCLNTFIQSRALSVEFPEMMSEVIAAQ 244 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTHHHHTCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHhcCCCCChHHHHHHHHhcC
Confidence 8999999999999999999765 67778888 9999999999999854
No 109
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=23.61 E-value=38 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=19.1
Q ss_pred HHhhcCCCCCCCCHHHHHHHHHH
Q psy6602 104 RWVRCLAPFQTLSKRDQLLLLQE 126 (367)
Q Consensus 104 ~waK~lp~F~~L~~~DQ~~LLk~ 126 (367)
+-+..|+||..|..+||..+.+.
T Consensus 67 ~~~~~I~G~~~L~~eDQ~~I~~~ 89 (114)
T 1v9x_A 67 KSVDDVEGIESLRWEDQQKIRKY 89 (114)
T ss_dssp SCGGGEETTTTSCHHHHHHHHHH
T ss_pred CChHHCCChHHCCHHHHHHHHHH
Confidence 45678999999999999988553
No 110
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=22.26 E-value=48 Score=25.38 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=17.9
Q ss_pred hhcCCCCCCCCHHHHHHHHHH
Q psy6602 106 VRCLAPFQTLSKRDQLLLLQE 126 (367)
Q Consensus 106 aK~lp~F~~L~~~DQ~~LLk~ 126 (367)
...|+||..|..+||..+.+.
T Consensus 73 ~~~i~G~~~L~~eDQ~~I~~~ 93 (117)
T 1uw0_A 73 LTELEGWEELEDNEKEQITQH 93 (117)
T ss_dssp TSSSBSTTTSCHHHHHHHHHH
T ss_pred hHHCcChHHCCHHHHHHHHHH
Confidence 466899999999999988654
No 111
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=21.85 E-value=32 Score=26.20 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.0
Q ss_pred hhcCCCCCCCCHHHHHHHHHH
Q psy6602 106 VRCLAPFQTLSKRDQLLLLQE 126 (367)
Q Consensus 106 aK~lp~F~~L~~~DQ~~LLk~ 126 (367)
+..|+||..|..+||..+.+.
T Consensus 75 ~~~I~Gf~~L~~eDQe~Ikk~ 95 (111)
T 3odc_A 75 ASQLKGFSLLATEDKEALKKQ 95 (111)
T ss_dssp GGGEETGGGSCHHHHHHHHHH
T ss_pred HHhCCChHHCCHHHHHHHHHH
Confidence 467999999999999998763
No 112
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=20.49 E-value=1.6e+02 Score=22.91 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCcchhhhhHHHHhcCC
Q psy6602 174 EILARFRQLSPDGSECGCMKAVILFTP 200 (367)
Q Consensus 174 ~~~~~l~~L~ld~~E~alLkai~L~~p 200 (367)
-++..+++|++++.|+.++--|.-|+.
T Consensus 20 ~LL~~y~~LgLs~~E~~lLl~L~~~~~ 46 (135)
T 2v79_A 20 LLLTHYKQLGLNETELILLLKIKMHLE 46 (135)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 377788999999999999999999864
Done!