RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6602
(367 letters)
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 153 bits (388), Expect = 2e-45
Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 1/186 (0%)
Query: 92 QETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINC 151
E+ L + V W + + F L DQ+ LL+ E LL + S+ + LL+
Sbjct: 43 CESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVLLLGN 102
Query: 152 EKARERLPPDDVRVNNE-IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP 210
+ R P+ ++ I+++ E++ F++L D +E +KA+I F P+ GL D
Sbjct: 103 DYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGK 162
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
++ L+ Q Q L DY+ R RFG LLL+LP+L+++ IE++ F + G I
Sbjct: 163 IKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKID 222
Query: 271 RLLGDM 276
LL +M
Sbjct: 223 NLLQEM 228
Score = 74.7 bits (183), Expect = 4e-16
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 343
+ GL D ++ L+ Q Q L DY+ R RFG LLL+LP+L+++ IE++ F
Sbjct: 153 DAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQF 212
Query: 344 KETIGDIPIQRLLGDM 359
+ G I LL +M
Sbjct: 213 IKLFGMAKIDNLLQEM 228
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 152 bits (385), Expect = 7e-45
Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 5/227 (2%)
Query: 55 LKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQT 114
LK P + Q + + L + + + LF V W R F+
Sbjct: 11 LKCEPDEPQVQAKIMAYLQQEQSNRNRQEKLSAFGLLCKMADQTLFSIVEWARSSIFFRE 70
Query: 115 LSKRDQLLLLQESWKELFLLHLAQWSIPWD----LSLLINCEKARERLPPDDVRVNNE-I 169
L DQ+ LLQ W EL +L + + L+ + N +
Sbjct: 71 LKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFNNLL 130
Query: 170 KLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGR 229
L QE++ R R L D E C+K ++LF+ + L + Q VE +Q+Q L DY
Sbjct: 131 SLAQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYTVCN 190
Query: 230 YSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDM 276
Y +Q +FG+LLL LP LRA+ + + L++K GD+P LL +M
Sbjct: 191 YPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVNGDVPYNNLLIEM 237
Score = 79.7 bits (196), Expect = 8e-18
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
L + Q VE +Q+Q L DY Y +Q +FG+LLL LP LRA+ + + L++K
Sbjct: 164 KNLENLQLVEGVQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPELRAISKQAEDYLYYKH 223
Query: 346 TIGDIPIQRLLGDM 359
GD+P LL +M
Sbjct: 224 VNGDVPYNNLLIEM 237
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 151 bits (382), Expect = 2e-44
Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 1/205 (0%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
T+ H L + + +K E + + V + + L F LS DQ+ LL+ + ++
Sbjct: 31 TNSSADHRVQLDLGLW-DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDI 89
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGC 191
+L + P ++ + R + L+ + L D +E G
Sbjct: 90 LMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGL 149
Query: 192 MKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVR 251
+ A+ L + L + + V+ LQ+ L Y R R QP F R+L+ + LR +
Sbjct: 150 LSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGIS 209
Query: 252 QSTIERLFFKETIGDIPIQRLLGDM 276
ER + P+ L+ +M
Sbjct: 210 TKGAERAITLKMEIPGPMPPLIREM 234
Score = 73.9 bits (181), Expect = 8e-16
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
+ L + + V+ LQ+ L Y R R QP F R+L+ + LR + ER
Sbjct: 157 CGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERA 216
Query: 342 FFKETIGDIPIQRLLGDM 359
+ P+ L+ +M
Sbjct: 217 ITLKMEIPGPMPPLIREM 234
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 147 bits (372), Expect = 7e-43
Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 25/242 (10%)
Query: 55 LKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQT 114
L + P + ++ PP + L + + + V W R + F
Sbjct: 17 LVADPSEEFQFLRVGPDSNVPPKFRAPVSSLC------QIGNKQIAALVVWARDIPHFSQ 70
Query: 115 LSKRDQLLLLQESWKELFLLHLAQWSIPW--DLSLLINCEKARERLPPDDVRVNNEIKL- 171
L DQ+LL++ SW EL L +A S+ + + ++ R PP + + + L
Sbjct: 71 LEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMCLMPGMTLH 130
Query: 172 ----------------IQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQ 215
+ E+ + R L D +E +KA+IL P+ GL + Q VE+L+
Sbjct: 131 RNSALQAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLR 190
Query: 216 DQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGD 275
++ L +Y R S + RF LLL LP+LR++ + E LFF + D I + D
Sbjct: 191 EKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVADTSIAGYIRD 250
Query: 276 MY 277
Sbjct: 251 AL 252
Score = 82.4 bits (203), Expect = 1e-18
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
+ + GL + Q VE+L+++ L +Y R S + RF LLL LP+LR++ + E L
Sbjct: 174 NPDVKGLKNRQEVEVLREKMFLCLDEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHL 233
Query: 342 FFKETIGDIPIQRLLGDMY 360
FF + D I + D
Sbjct: 234 FFFHLVADTSIAGYIRDAL 252
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 144 bits (365), Expect = 4e-42
Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 15/224 (6%)
Query: 58 PPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSK 117
P P H + L + R + + + W + + F +LS
Sbjct: 13 PEKLYAMPDPA-----GPDGHLPAVATLC------DLFDREIVVTISWAKSIPGFSSLSL 61
Query: 118 RDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILA 177
DQ+ +LQ W E+ +L +AQ S+P L + + + + +++
Sbjct: 62 SDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVR 121
Query: 178 RFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR----Q 233
R + L + E +KA+ L ++ + DA+ VE L++ L +Y GR +
Sbjct: 122 RLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAE 181
Query: 234 PTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
R GRLLL LP LR + + + G +P+ +L +M
Sbjct: 182 RRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEML 225
Score = 70.9 bits (173), Expect = 7e-15
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR----QPTRFGRLLLMLPSLRAVRQST 337
+ ++ + DA+ VE L++ L +Y GR + R GRLLL LP LR
Sbjct: 143 NSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKV 202
Query: 338 IERLFFKETIGDIPIQRLLGDMY 360
+ + + G +P+ +L +M
Sbjct: 203 LAHFYGVKLEGKVPMHKLFLEML 225
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 145 bits (366), Expect = 7e-42
Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 30/246 (12%)
Query: 60 PPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRD 119
FL + +SA + + LF V + R + F + D
Sbjct: 15 TQCGDRALTFLRVGPYSTVQPDYKGAVSA--LCQVVNKQLFQMVEYARMMPHFAQVPLDD 72
Query: 120 QLLLLQESWKELFLLHLAQWSIPWDLSLLINC-----------EKARERLPPDDVRVNNE 168
Q++LL+ +W EL + ++A SI E+ L P + +N
Sbjct: 73 QVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQS 132
Query: 169 IKL-----------------IQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
+ E+ + ++L+ D E C+KA+IL+ P+ G+ +
Sbjct: 133 FSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEI 192
Query: 212 EMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQR 271
EM +++ L ++ R + RF +LLL LP+LR++ + LF D P++
Sbjct: 193 EMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEE 252
Query: 272 LLGDMY 277
L +
Sbjct: 253 LFLEQL 258
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 143 bits (362), Expect = 1e-41
Identities = 43/185 (23%), Positives = 89/185 (48%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
+ R L + + W + + F TLS DQ+ LLQ +W E+ +L + S+ ++ L+ +
Sbjct: 37 DLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADD 96
Query: 153 KARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVE 212
+ + + I +++ +++ + + E +KA+ L ++ + D + V+
Sbjct: 97 YIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQ 156
Query: 213 MLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRL 272
LQD L DY G++ P R G++L+ LP LR ++ + + G +P+ +L
Sbjct: 157 KLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKL 216
Query: 273 LGDMY 277
+M
Sbjct: 217 FLEML 221
Score = 76.6 bits (188), Expect = 6e-17
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
+ ++ + D + V+ LQD L DY G++ P R G++L+ LP LR ++
Sbjct: 143 NSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHF 202
Query: 342 FFKETIGDIPIQRLLGDMY 360
+ + G +P+ +L +M
Sbjct: 203 YNIKLEGKVPMHKLFLEML 221
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 143 bits (361), Expect = 5e-41
Identities = 40/206 (19%), Positives = 79/206 (38%), Gaps = 2/206 (0%)
Query: 74 QPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFL 133
P + + CQ + + + + + F L DQ+ LL+ E+
Sbjct: 62 TPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIY 121
Query: 134 LHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNE-IKLIQEILARFRQLSPDGSECGCM 192
LA + + + + ++ E +F L D S+
Sbjct: 122 TMLASLMNKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIF 181
Query: 193 KAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQ 252
AVI+ + + PGL++ +P+E +QD L ++ + F +LL + LR +
Sbjct: 182 IAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVT 241
Query: 253 STIERLF-FKETIGDIPIQRLLGDMY 277
++ L K+T D+ + LL ++Y
Sbjct: 242 EHVQLLQVIKKTETDMSLHPLLQEIY 267
Score = 75.4 bits (185), Expect = 3e-16
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 283 YETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 342
+ PGL++ +P+E +QD L ++ + F +LL + LR + ++ L
Sbjct: 189 GDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQ 248
Query: 343 -FKETIGDIPIQRLLGDMY 360
K+T D+ + LL ++Y
Sbjct: 249 VIKKTETDMSLHPLLQEIY 267
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 142 bits (358), Expect = 1e-40
Identities = 45/237 (18%), Positives = 82/237 (34%), Gaps = 11/237 (4%)
Query: 52 PSGLKSPPPPSHHH---------PSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMA 102
+G S P H + P + +CQ TT +
Sbjct: 27 LTGKASHTAPFVIHDIETLWQAEKGLVWKQLVNGLPPYKEISVHVFYRCQCTTVETVREL 86
Query: 103 VRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDD 162
+ + + F +L DQ+ LL+ E LA L +
Sbjct: 87 TEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNKDGLLVANGSGFVTREFLRSL 146
Query: 163 VRVNNE-IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCI 221
+ ++ I+ E +F L D S+ A I+ + PGL++ VE +QD
Sbjct: 147 RKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQDTILRA 206
Query: 222 LGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF-FKETIGDIPIQRLLGDMY 277
L +++ + F +LL + LR + + + K+T + + LL ++Y
Sbjct: 207 LEFHLQANHPDAQQLFPKLLQKMADLRQLVTEHAQMMQRIKKTETETSLHPLLQEIY 263
Score = 70.0 bits (171), Expect = 3e-14
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
+ PGL++ VE +QD L +++ + F +LL + LR + + +
Sbjct: 184 CGDRPGLMNVPRVEAIQDTILRALEFHLQANHPDAQQLFPKLLQKMADLRQLVTEHAQMM 243
Query: 342 F-FKETIGDIPIQRLLGDMY 360
K+T + + LL ++Y
Sbjct: 244 QRIKKTETETSLHPLLQEIY 263
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 138 bits (349), Expect = 9e-40
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 1/189 (0%)
Query: 89 EKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLL 148
+ + LF V W + + F L DQ++LL+ W EL + + SI +L
Sbjct: 38 TNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGIL 97
Query: 149 INCEKARERLPPDDVRVNNE-IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVD 207
+ R V +++ E++++ R + D +E GC++A++LF P++ GL +
Sbjct: 98 LATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSN 157
Query: 208 AQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDI 267
VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF + IGD
Sbjct: 158 PAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDT 217
Query: 268 PIQRLLGDM 276
PI L +M
Sbjct: 218 PIDTFLMEM 226
Score = 72.8 bits (178), Expect = 1e-15
Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKE 345
GL + VE L+++ L Y + +Y QP RF +LLL LP+LR++ +E LFF +
Sbjct: 153 KGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFK 212
Query: 346 TIGDIPIQRLLGDM 359
IGD PI L +M
Sbjct: 213 LIGDTPIDTFLMEM 226
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 137 bits (345), Expect = 4e-39
Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 4/208 (1%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
+ + ++ + + L + +W + F LS DQ LLL+ ++ EL
Sbjct: 25 FQELVLPHFGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLEL 84
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGC 191
F+L LA S P + L+ RL + I I L D C
Sbjct: 85 FILRLAYRSKPGEGKLIFCSGLVLHRLQCAR-GFGDWIDSILAFSRSLHSLLVDVPAFAC 143
Query: 192 MKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGR--YSRQPTRFGRLLLMLPSLRA 249
+ A ++ + GL + + VE LQ++ L ++V + + RLL LP LR
Sbjct: 144 LSA-LVLITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRT 202
Query: 250 VRQSTIERLFFKETIGDIPIQRLLGDMY 277
+ ++R+F+ + +P ++ ++
Sbjct: 203 LCTQGLQRIFYLKLEDLVPPPPIIDKIF 230
Score = 69.7 bits (170), Expect = 2e-14
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGR--YSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
+ GL + + VE LQ++ L ++V + + RLL LP LR + ++R+
Sbjct: 152 DRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGKLPELRTLCTQGLQRI 211
Query: 342 FFKETIGDIPIQRLLGDMY 360
F+ + +P ++ ++
Sbjct: 212 FYLKLEDLVPPPPIIDKIF 230
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 135 bits (341), Expect = 4e-38
Identities = 34/189 (17%), Positives = 72/189 (38%), Gaps = 2/189 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
CQ T+ + + + + F L DQ+ LL+ E L+ + +
Sbjct: 75 CQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYG 134
Query: 151 CEKARERLPPDDVRVNNE-IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ + ++ + +F L D S+ A I+ + PGL++
Sbjct: 135 NGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVG 194
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF-FKETIGDIP 268
+E +Q+ +L +++ + F +LL + LR + + + K+T D
Sbjct: 195 HIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLVQIIKKTESDAA 254
Query: 269 IQRLLGDMY 277
+ LL ++Y
Sbjct: 255 LHPLLQEIY 263
Score = 74.3 bits (182), Expect = 1e-15
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
+ PGL++ +E +Q+ +L +++ + F +LL + LR + + +
Sbjct: 184 CGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLLQKMADLRQLVTEHAQLV 243
Query: 342 F-FKETIGDIPIQRLLGDMY 360
K+T D + LL ++Y
Sbjct: 244 QIIKKTESDAALHPLLQEIY 263
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 132 bits (332), Expect = 3e-37
Identities = 43/195 (22%), Positives = 74/195 (37%), Gaps = 11/195 (5%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
+ + L + W + + F LS DQ+ LL+ W E+ ++ L SI L+ +
Sbjct: 39 KLADKELVHMIGWAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSIDHPGKLIFAPD 98
Query: 153 KARERLPPDDVRVNNE-IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPV 211
+R V E ++ +RFR+L E C+KA+IL L A
Sbjct: 99 LVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLASANQE 158
Query: 212 EMLQDQAQCILGDYV----------RGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFK 261
+ +L +Q R LL++L +R + +E L
Sbjct: 159 AESSRKLTHLLNAVTDALVWVIAKSGISSQQQSVRLANLLMLLSHVRHISNKGMEHLLSM 218
Query: 262 ETIGDIPIQRLLGDM 276
+ +P+ LL +M
Sbjct: 219 KCKNVVPVYDLLLEM 233
Score = 64.0 bits (155), Expect = 2e-12
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 10/88 (11%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYV----------RGRYSRQPTRFGRLLLMLPSLR 331
+ L A + +L +Q R LL++L +R
Sbjct: 146 NSSMYPLASANQEAESSRKLTHLLNAVTDALVWVIAKSGISSQQQSVRLANLLMLLSHVR 205
Query: 332 AVRQSTIERLFFKETIGDIPIQRLLGDM 359
+ +E L + +P+ LL +M
Sbjct: 206 HISNKGMEHLLSMKCKNVVPVYDLLLEM 233
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 132 bits (333), Expect = 3e-37
Identities = 42/196 (21%), Positives = 79/196 (40%), Gaps = 12/196 (6%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCE 152
R L + W + + F L+ DQ+ LL+ +W E+ ++ L S+ LL
Sbjct: 42 NLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHPGKLLFAPN 101
Query: 153 KARERLPPDDVRVNNE-IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP- 210
+R V E ++ +RFR ++ G E C+K++IL + +
Sbjct: 102 LLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLK 161
Query: 211 -------VEMLQDQAQCILGDYVR---GRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFF 260
+ + D+ L + +Q R +LLL+L +R + +E L+
Sbjct: 162 SLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYS 221
Query: 261 KETIGDIPIQRLLGDM 276
+ +P+ LL +M
Sbjct: 222 MKCKNVVPLYDLLLEM 237
Score = 70.5 bits (172), Expect = 1e-14
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVR---GRYSRQPTRFGRLLLMLPSLRAVRQSTI 338
S L + + + D+ L + +Q R +LLL+L +R + +
Sbjct: 157 SSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGM 216
Query: 339 ERLFFKETIGDIPIQRLLGDM 359
E L+ + +P+ LL +M
Sbjct: 217 EHLYSMKCKNVVPLYDLLLEM 237
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 131 bits (330), Expect = 7e-37
Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 4/212 (1%)
Query: 68 MFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQES 127
+ P + ++ + + + W + F L K DQ LL + +
Sbjct: 21 DYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESA 80
Query: 128 WKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGS 187
+ ELF+L LA S P + L+ RL I I E + + ++ D S
Sbjct: 81 FLELFVLRLAYRSNPVEGKLIFCNGVVLHRLQCVR-GFGEWIDSIVEFSSNLQNMNIDIS 139
Query: 188 ECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR--QPTRFGRLLLMLP 245
C+ A+ + T GL + + VE LQ++ L D+V +P +LL LP
Sbjct: 140 AFSCIAALAMVTE-RHGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLP 198
Query: 246 SLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
LR + ++R+F+ + +P ++ ++
Sbjct: 199 ELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLF 230
Score = 69.3 bits (169), Expect = 3e-14
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYSR--QPTRFGRLLLMLPSLRAVRQSTIERLFF 343
GL + + VE LQ++ L D+V +P +LL LP LR + ++R+F+
Sbjct: 154 HGLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSKLLGKLPELRTLCTQGLQRIFY 213
Query: 344 KETIGDIPIQRLLGDMY 360
+ +P ++ ++
Sbjct: 214 LKLEDLVPPPAIIDKLF 230
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 131 bits (331), Expect = 9e-37
Identities = 41/213 (19%), Positives = 74/213 (34%), Gaps = 1/213 (0%)
Query: 66 PSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQ 125
P G L + + + V + + L F L DQ++LL+
Sbjct: 37 PEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLK 96
Query: 126 ESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPD 185
E+ L A P +L +N E A R + + I ++ + D
Sbjct: 97 GCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLD 156
Query: 186 GSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLP 245
+E ++AV+L + + PGL + +E QD Y+ R + +LL+ +
Sbjct: 157 DTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVT 216
Query: 246 SLRAVRQSTIERLF-FKETIGDIPIQRLLGDMY 277
LR + R K L +++
Sbjct: 217 DLRMIGACHASRFLHMKVECPTELFPPLFLEVF 249
Score = 68.1 bits (166), Expect = 1e-13
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + PGL + +E QD Y+ R + +LL+ + LR + R
Sbjct: 170 SSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRF 229
Query: 342 F-FKETIGDIPIQRLLGDMY 360
K L +++
Sbjct: 230 LHMKVECPTELFPPLFLEVF 249
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 130 bits (327), Expect = 7e-36
Identities = 42/278 (15%), Positives = 95/278 (34%), Gaps = 14/278 (5%)
Query: 12 IHNAHHQ---DSKLEPHNPHHSPDLLPPNGISSVKIPPTVLYPPSGLKSPPPPSHHHPS- 67
+ +A + + N L + P+ + S
Sbjct: 13 LMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKVSL 72
Query: 68 ------MFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQL 121
+ ++PP G +I + + + + + + ++ F+ L DQ+
Sbjct: 73 QLRGEDGSVWNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQI 132
Query: 122 LLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQ 181
LL+ + EL L + + ++ + + ++
Sbjct: 133 SLLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLEDTAGGFQ-QLLLEPMLKFHYMLKK 191
Query: 182 LSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP--TRFGR 239
L E M+A+ LF+P+ PG++ + V+ LQ+Q L Y+ + F +
Sbjct: 192 LQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLK 251
Query: 240 LLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
++ ML LR++ +RL + I L+ +++
Sbjct: 252 IMAMLTELRSINAQHTQRLLRIQDI-HPFATPLMQELF 288
Score = 57.4 bits (138), Expect = 6e-10
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP--TRFGRLLLMLPSLRAVRQSTIE 339
S + PG++ + V+ LQ+Q L Y+ + F +++ ML LR++ +
Sbjct: 209 SPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQ 268
Query: 340 RLFFKETIGDIPIQRLLGDMY 360
RL + I L+ +++
Sbjct: 269 RLLRIQDI-HPFATPLMQELF 288
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 128 bits (322), Expect = 9e-36
Identities = 50/225 (22%), Positives = 87/225 (38%), Gaps = 12/225 (5%)
Query: 55 LKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQT 114
+ + P PS S + + ++ + + + ++ + +
Sbjct: 13 VDTTPDPSCLDYSHY---EEQSMSE-----ADKVQQFYQLLTSSVDVIKQFAEKIPGYFD 64
Query: 115 LSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQE 174
L DQ LL Q + ELF+L LA + D L+ R + I E
Sbjct: 65 LLPEDQELLFQSASLELFVLRLAYRARIDDTKLIFCNGTVLHR-TQCLRSFGEWLNDIME 123
Query: 175 ILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYS--R 232
L D S C+ A+ L T GL + + VE LQ + L D+V +
Sbjct: 124 FSRSLHNLEIDISAFACLCALTLITE-RHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQK 182
Query: 233 QPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
+ F RLL LP LR++ ++R+F+ + +P L+ +M+
Sbjct: 183 KQHYFSRLLGKLPELRSLSVQGLQRIFYLKLEDLVPAPALIENMF 227
Score = 68.5 bits (167), Expect = 5e-14
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYS--RQPTRFGRLLLMLPSLRAVRQSTIERL 341
E GL + + VE LQ + L D+V ++ F RLL LP LR++ ++R+
Sbjct: 149 ERHGLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFSRLLGKLPELRSLSVQGLQRI 208
Query: 342 FFKETIGDIPIQRLLGDMY 360
F+ + +P L+ +M+
Sbjct: 209 FYLKLEDLVPAPALIENMF 227
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 122 bits (306), Expect = 2e-33
Identities = 40/216 (18%), Positives = 88/216 (40%), Gaps = 6/216 (2%)
Query: 65 HPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLL 124
P+ HQP P +L + ++ +++ + L F++L DQ+ LL
Sbjct: 35 PPAHLFIHHQPLPTLA--PVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLL 92
Query: 125 QESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSP 184
+ + E+ + L + L + ++L+ R+L
Sbjct: 93 KGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQL 152
Query: 185 DGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR--QPTRFGRLLL 242
E + A+ LF+P+ PG+ ++ LQ++ L Y++G+ R + +LL
Sbjct: 153 QEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLG 212
Query: 243 MLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMYT 278
+L LR++ ++ ++ + G + LL ++ +
Sbjct: 213 LLAELRSINEAYGYQIQHIQ--GLSAMMPLLQEICS 246
Score = 64.3 bits (156), Expect = 2e-12
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR--QPTRFGRLLLMLPSLRAVRQSTIE 339
S + PG+ ++ LQ++ L Y++G+ R + +LL +L LR++ ++
Sbjct: 167 SPDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGY 226
Query: 340 RLFFKETIGDIPIQRLLGDMYT 361
++ + G + LL ++ +
Sbjct: 227 QIQHIQ--GLSAMMPLLQEICS 246
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 122 bits (306), Expect = 3e-33
Identities = 40/212 (18%), Positives = 70/212 (33%), Gaps = 15/212 (7%)
Query: 74 QPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFL 133
+P LL L + R L V+W + L F+ L DQ+ L+Q SW L +
Sbjct: 26 KPDTSSSLLTSL------NQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMV 79
Query: 134 LHLAQWSIPWDLS--LLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGC 191
L S L + + + + +I F +L E C
Sbjct: 80 FGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLC 139
Query: 192 MKAVILFTPETP-GLVDAQPVEMLQDQAQCILGDYVRGR---YSRQPTRFGRLLLMLPSL 247
MK ++L GL E ++ L + R RF +L +L +L
Sbjct: 140 MKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNL 199
Query: 248 RAVRQSTIER---LFFKETIGDIPIQRLLGDM 276
+ + F + + ++ ++
Sbjct: 200 HDLVKQLHLYCLNTFIQSRALSVEFPEMMSEV 231
Score = 55.8 bits (134), Expect = 1e-09
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 6/84 (7%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGR---YSRQPTRFGRLLLMLPSLRAVRQSTI 338
+ GL E ++ L + R RF +L +L +L + +
Sbjct: 148 TIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLH 207
Query: 339 ER---LFFKETIGDIPIQRLLGDM 359
F + + ++ ++
Sbjct: 208 LYCLNTFIQSRALSVEFPEMMSEV 231
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 120 bits (303), Expect = 6e-33
Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 4/187 (2%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
E + + V + + L FQTL DQ+ LL+ S E L A+ ++ L
Sbjct: 47 LTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEI---FNKKLPSG 103
Query: 151 CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQP 210
E + + I + +L E + A+++ +P+ + D +
Sbjct: 104 HSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREA 163
Query: 211 VEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQ 270
VE LQ+ +L + P F LL L LR E L + D
Sbjct: 164 VEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSW-RVNDHKFT 222
Query: 271 RLLGDMY 277
LL +++
Sbjct: 223 PLLCEIW 229
Score = 66.6 bits (162), Expect = 2e-13
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 283 YETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLF 342
+ + D + VE LQ+ +L + P F LL L LR E L
Sbjct: 153 PDRQYIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLM 212
Query: 343 FKETIGDIPIQRLLGDMY 360
+ D LL +++
Sbjct: 213 SW-RVNDHKFTPLLCEIW 229
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 121 bits (304), Expect = 6e-33
Identities = 37/193 (19%), Positives = 76/193 (39%), Gaps = 9/193 (4%)
Query: 93 ETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLI--N 150
E R L V+W + L F+ L DQ+ ++Q SW L + + S S ++
Sbjct: 38 ELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFA 97
Query: 151 CEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGCMKAVILFTP-ETPGLVDAQ 209
+ R+ ++ ++ + F L E CMKA++LF+ GL + +
Sbjct: 98 PDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQK 157
Query: 210 PVEMLQDQAQCILGDYVRGRYSR---QPTRFGRLLLMLPSLRAVRQSTIER---LFFKET 263
+ L+ L + + RF +L +L S++ + + + L K
Sbjct: 158 FFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQFTFDLLIKSH 217
Query: 264 IGDIPIQRLLGDM 276
+ + ++ ++
Sbjct: 218 MVSVDFPEMMAEI 230
Score = 58.6 bits (141), Expect = 2e-10
Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR---QPTRFGRLLLMLPSLRAVRQSTIER 340
GL + + + L+ L + + RF +L +L S++ + + +
Sbjct: 149 PVDGLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRRFYQLTKLLDSVQPIARELHQF 208
Query: 341 ---LFFKETIGDIPIQRLLGDM 359
L K + + ++ ++
Sbjct: 209 TFDLLIKSHMVSVDFPEMMAEI 230
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 120 bits (301), Expect = 1e-32
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 2/188 (1%)
Query: 91 CQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLIN 150
E + V + + + F L + DQ+ LL+ S E+ LL A+ +
Sbjct: 52 FTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFL 111
Query: 151 CEKARERLPPDDVRVNNE-IKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQ 209
+ + + E I I E R+L D +E + A+ +F+ + P + +
Sbjct: 112 KDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPG 171
Query: 210 PVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPI 269
VE LQ L Y R + + RF R+L+ L SLR + E++F + D +
Sbjct: 172 RVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFAL-RLQDKKL 230
Query: 270 QRLLGDMY 277
LL +++
Sbjct: 231 PPLLSEIW 238
Score = 63.9 bits (155), Expect = 2e-12
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + P + + VE LQ L Y R + + RF R+L+ L SLR + E++
Sbjct: 161 SADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQV 220
Query: 342 FFKETIGDIPIQRLLGDMY 360
F + D + LL +++
Sbjct: 221 FAL-RLQDKKLPPLLSEIW 238
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 119 bits (300), Expect = 2e-32
Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 25/234 (10%)
Query: 51 PPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLA 110
P L + S P ++ L R + AV+W + +
Sbjct: 11 EPEVLYAGYDSS-----------VPDSTWRIMTTL------NMLGGRQVIAAVKWAKAIP 53
Query: 111 PFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLS--LLINCEKARERLPPDDVRVNNE 168
F+ L DQ+ LLQ SW L L S + L + + ++
Sbjct: 54 GFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAPDLIINEQRMTLPDMYDQ 113
Query: 169 IKLIQEILARFRQLSPDGSECGCMKAVILFTPET-PGLVDAQPVEMLQDQAQCILGDYVR 227
K + + + +L E CMK ++L + GL + + ++ LG +
Sbjct: 114 CKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAIV 173
Query: 228 GRYS---RQPTRFGRLLLMLPSLRAVRQSTIERLF--FKETIGDIPIQRLLGDM 276
R + RF +L +L S+ V ++ + F F + I +L ++
Sbjct: 174 KREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCFQTFLDKTMSIEFPEMLAEI 227
Score = 55.9 bits (134), Expect = 1e-09
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 286 PGLVDAQPVEMLQDQAQCILGDYVRGRYS---RQPTRFGRLLLMLPSLRAVRQSTIERLF 342
GL + + ++ LG + R + RF +L +L S+ V ++ + F
Sbjct: 149 DGLKSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHEVVENLLNYCF 208
Query: 343 --FKETIGDIPIQRLLGDM 359
F + I +L ++
Sbjct: 209 QTFLDKTMSIEFPEMLAEI 227
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 118 bits (296), Expect = 7e-32
Identities = 39/209 (18%), Positives = 78/209 (37%), Gaps = 5/209 (2%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
T M + E T + + V + + L F +S+ DQ+ LL+ E+
Sbjct: 34 TQTWQSDEDDEDSDMPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEV 93
Query: 132 FLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSECGC 191
+L +A+ S+L +A R + I+ + + D
Sbjct: 94 MMLRVARRYDAATDSVLFANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMMMDNVHYAL 153
Query: 192 MKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP---TRFGRLLLMLPSLR 248
+ A+++F+ PGL VE +Q L Y+ + S P FG++L +L +R
Sbjct: 154 LTAIVIFSDR-PGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIR 212
Query: 249 AVRQSTIERLFFKETIGDIPIQRLLGDMY 277
+ + + + + L +++
Sbjct: 213 TLGMQNSNMCISLK-LKNRKLPPFLEEIW 240
Score = 55.8 bits (134), Expect = 1e-09
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 284 ETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQP---TRFGRLLLMLPSLRAVRQSTIER 340
+ PGL VE +Q L Y+ + S P FG++L +L +R +
Sbjct: 162 DRPGLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFGKILGILTEIRTLGMQNSNM 221
Query: 341 LFFKETIGDIPIQRLLGDMY 360
+ + + + L +++
Sbjct: 222 CISLK-LKNRKLPPFLEEIW 240
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 117 bits (293), Expect = 2e-31
Identities = 34/231 (14%), Positives = 84/231 (36%), Gaps = 10/231 (4%)
Query: 47 TVLYPPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWV 106
T Y L +H + + + ++C + V +
Sbjct: 19 TCQYTMEELHQLAWQTHTYEE-----IKAYQSKSREALW---QQCAIQITHAIQYVVEFA 70
Query: 107 RCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVN 166
+ + F L + DQ+LLL+ E+ L+ + + P + ++L + ++ + +
Sbjct: 71 KRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKA-LGSD 129
Query: 167 NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYV 226
+ + + L E + +L +P+ L++ + V+ LQ++ L +
Sbjct: 130 DLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVI 189
Query: 227 RGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
+ + +L+ +P++ AV E+L + + L +Y
Sbjct: 190 QKNH-LDDETLAKLIAKIPTITAVCNLHGEKLQVFKQSHPDIVNTLFPPLY 239
Score = 59.0 bits (142), Expect = 9e-11
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L++ + V+ LQ++ L ++ + +L+ +P++ AV E+L
Sbjct: 162 SPDRAWLLEPRKVQKLQEKIYFALQHVIQKNH-LDDETLAKLIAKIPTITAVCNLHGEKL 220
Query: 342 FFKETIGDIPIQRLLGDMY 360
+ + L +Y
Sbjct: 221 QVFKQSHPDIVNTLFPPLY 239
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 114 bits (285), Expect = 4e-30
Identities = 35/212 (16%), Positives = 84/212 (39%), Gaps = 6/212 (2%)
Query: 72 THQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQESWKEL 131
L L + + + + + + + F+ L+ DQ++LL+ S E+
Sbjct: 43 NDGGGSVTLELSQLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEV 102
Query: 132 FLLHLAQWSIPWDLSLLI--NCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPDGSEC 189
+L + D+S K R I+ + + ++L+ E
Sbjct: 103 IMLRSNESFTMDDMSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEH 162
Query: 190 GCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR--QPTRFGRLLLMLPSL 247
+ A+ + +P+ PG+ DA +E +QD+ L Y+R R+ + +++ L L
Sbjct: 163 VLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADL 222
Query: 248 RAVRQSTIERLFFKETIGDIPIQ--RLLGDMY 277
R++ + ++ + ++ L+ +++
Sbjct: 223 RSLNEEHSKQYRCLSFQPECSMKLTPLVLEVF 254
Score = 52.8 bits (126), Expect = 1e-08
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSR--QPTRFGRLLLMLPSLRAVRQSTIE 339
S + PG+ DA +E +QD+ L Y+R R+ + +++ L LR++ + +
Sbjct: 172 SPDRPGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSK 231
Query: 340 RLFFKETIGDIPIQ--RLLGDMY 360
+ + ++ L+ +++
Sbjct: 232 QYRCLSFQPECSMKLTPLVLEVF 254
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 113 bits (283), Expect = 6e-30
Identities = 35/231 (15%), Positives = 83/231 (35%), Gaps = 10/231 (4%)
Query: 47 TVLYPPSGLKSPPPPSHHHPSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWV 106
T Y L+ + + +Q + Q+ C + V +
Sbjct: 27 TCQYLREELQQITWQTFLQEEI--ENYQNKQREVMWQL------CAIKITEAIQYVVEFA 78
Query: 107 RCLAPFQTLSKRDQLLLLQESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVN 166
+ + F L + DQ++LL+ E+ + + + + ++ + + A + +
Sbjct: 79 KRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKS-LGCE 137
Query: 167 NEIKLIQEILARFRQLSPDGSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYV 226
+ I + E + E A +L + + L + +E LQ + Q L +
Sbjct: 138 DFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVL 197
Query: 227 RGRYSRQPTRFGRLLLMLPSLRAVRQSTIERLFFKETIGDIPIQRLLGDMY 277
+ + R+ +L+ + +LRA+ E+L + I ++ +Y
Sbjct: 198 QKNH-REDGILTKLICKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLY 247
Score = 54.7 bits (131), Expect = 3e-09
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTRFGRLLLMLPSLRAVRQSTIERL 341
S + L + +E LQ + Q L ++ + R+ +L+ + +LRA+ E+L
Sbjct: 170 SADRSWLQEKVKIEKLQQKIQLALQHVLQKNH-REDGILTKLICKVSTLRALCGRHTEKL 228
Query: 342 FFKETIGDIPIQRLLGDMY 360
+ I ++ +Y
Sbjct: 229 MAFKAIYPDIVRLHFPPLY 247
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 108 bits (270), Expect = 3e-28
Identities = 36/195 (18%), Positives = 79/195 (40%), Gaps = 4/195 (2%)
Query: 66 PSMFLATHQPPPHPGLLQILMSAEKCQETTARLLFMAVRWVRCLAPFQTLSKRDQLLLLQ 125
P+ H+P G +L + ++ +++ + L F++L+ DQ+ LL+
Sbjct: 35 PAYLFMHHRPFQPRG--PVLPLLTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLK 92
Query: 126 ESWKELFLLHLAQWSIPWDLSLLINCEKARERLPPDDVRVNNEIKLIQEILARFRQLSPD 185
+ E+ + L + + ++ I + L
Sbjct: 93 GAAVEILHISLNTTFCLQTENFFCGPLCYKMEDAVHAGFQYEFLESILHFHKNLKGLHLQ 152
Query: 186 GSECGCMKAVILFTPETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR--FGRLLLM 243
E M A LF+P+ PG+ + ++ LQ++ IL +++ + SR +R + +L+ +
Sbjct: 153 EPEYVLMAATALFSPDRPGVTQREEIDQLQEEMALILNNHIMEQQSRLQSRFLYAKLMGL 212
Query: 244 LPSLRAVRQSTIERL 258
L LR++ + L
Sbjct: 213 LADLRSINNAYSYEL 227
Score = 50.8 bits (121), Expect = 5e-08
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 282 SYETPGLVDAQPVEMLQDQAQCILGDYVRGRYSRQPTR--FGRLLLMLPSLRAVRQSTIE 339
S + PG+ + ++ LQ++ IL +++ + SR +R + +L+ +L LR++ +
Sbjct: 166 SPDRPGVTQREEIDQLQEEMALILNNHIMEQQSRLQSRFLYAKLMGLLADLRSINNAYSY 225
Query: 340 RL 341
L
Sbjct: 226 EL 227
>d2a8ea1 d.296.1.1 (A:2-211) Hypothetical protein YktB {Bacillus
subtilis [TaxId: 1423]}
Length = 210
Score = 27.1 bits (60), Expect = 3.1
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 157 RLPPDDVRVNNEIKLIQEILARFRQLSP 184
+L ++V N + +Q I F+QL+
Sbjct: 173 QLQKEEVLNMNNQEFLQRIDDAFKQLAF 200
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.430
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,428,499
Number of extensions: 68794
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 62
Length of query: 367
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,213,086
Effective search space: 339664080
Effective search space used: 339664080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)