BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6603
(724 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%)
Query: 42 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 101
G +EA EY ++ L D +S W+ G YDEAI+ Y+ AL+ + + + +
Sbjct: 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 74
Query: 102 LSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMAC 150
L + D + E + L P +W AY+ D+D A
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 123
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 485 TLKKCHEVDRKCYEHKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKEEAYE 543
+ + + + Y+ Y +++ ++ L +P+ AE L G G +EA E
Sbjct: 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL---GNAYYKQGDYDEAIE 90
Query: 544 YVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
Y ++ L D +S W+ G YDEAI+ Y+ AL+
Sbjct: 91 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 497 YEHKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555
Y+ Y +++ ++ L +P+ AE L G G +EA EY ++ L D +S
Sbjct: 12 YKQGDYDEAIEYYQKALELDPRSAEAWYNL---GNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 556 HVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
W+ G YDEAI+ Y+ AL+
Sbjct: 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALE 97
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 7/133 (5%)
Query: 64 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLF 123
W+ G YDEAI+ Y+ AL+ + + + +L + D + E +
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 124 MLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD 183
L P +W AY+ D+D A +E ++K ++ D +E
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEA---IEYYQKALEL----DPRSAEAWYNLGNAYYK 115
Query: 184 SGDLEEAVKHLDR 196
GD +EA+++ +
Sbjct: 116 QGDYDEAIEYYQK 128
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 125 LRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS 184
L P +W AY+ D+D A +E ++K ++ D +E
Sbjct: 30 LDPRSAEAWYNLGNAYYKQGDYDEA---IEYYQKALEL----DPRSAEAWYNLGNAYYKQ 82
Query: 185 GDLEEAVKHLDRFKEQIHDKLTVEETY--GALKLKLGQYNEAMKHYESLIE 233
GD +EA+++ + E D + E Y G K G Y+EA+++Y+ +E
Sbjct: 83 GDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 39/97 (40%)
Query: 54 GLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 113
G + S W+ G YDEAI+ Y+ AL+ + +N + +L + D +
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 114 GYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMAC 150
E + L P +W AY+ D+D A
Sbjct: 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 97
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 483 GDTLKKCHEVDRKCYEHKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKEEA 541
G++ + + + Y+ Y +++ ++ L +P AE L G G +EA
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL---GNAYYKQGDYDEA 62
Query: 542 YEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 597
EY ++ L D + W+ G YDEAI+ Y+ AL+ + +N + ++L
Sbjct: 63 IEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 42 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 101
G +EA EY ++ L D + W+ G YDEAI+ Y+ AL+ + +N + ++
Sbjct: 57 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Query: 102 LS 103
L
Sbjct: 117 LG 118
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 124 MLRPTQRA-SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQ 182
+ P A +W AY+ D+D A +E ++K ++ D ++E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEA---IEYYQKALEL----DPNNAEAWYNLGNAYY 54
Query: 183 DSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYY 242
GD +EA+++ + E + G K G Y+EA+++Y+ +E + N
Sbjct: 55 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114
Query: 243 NKLVEAKQ 250
L AKQ
Sbjct: 115 QNLGNAKQ 122
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 54 GLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 113
G + S W+ G YDEAI+ Y+ AL+ +N + +L + D +
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYD 60
Query: 114 GYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKT 159
E + L P +W AY+ D+D A +E ++K
Sbjct: 61 EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA---IEYYQKA 103
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 483 GDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAY 542
G++ + + + Y+ Y +++ ++ L Y + E G G +EA
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LYPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 543 EYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 597
EY ++ L + W+ G YDEAI+ Y+ AL+ +N + ++L
Sbjct: 64 EYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 124 MLRPTQRA-SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQ 182
+ P A +W AY+ D+D A +E ++K ++ + ++E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEA---IEYYQKALELYPN----NAEAWYNLGNAYY 54
Query: 183 DSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYY 242
GD +EA+++ + E + G K G Y+EA+++Y+ +E LY
Sbjct: 55 KQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE------LYP 108
Query: 243 NKLVEAKQLTNN 254
N EAKQ N
Sbjct: 109 NN-AEAKQNLGN 119
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 42 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 101
G +EA EY ++ L D + W+ G YDEAI+ Y+ AL+ + +N + ++
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82
Query: 102 LS 103
L
Sbjct: 83 LG 84
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 536 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 595
G +EA EY ++ L D + W+ G YDEAI+ Y+ AL+ + +N + ++
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82
Query: 596 LS 597
L
Sbjct: 83 LG 84
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 201 IHDKLTVEE-TYGALKLKLGQYNEAMKHYESLIERNQENTLYYN-------KLVE-AKQL 251
I+ +L EE G K G Y AM+HY ++R+ EN + Y+ KL+E + L
Sbjct: 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRAL 67
Query: 252 TNNDDIFQLLTHYISKY 268
+ D +L + +I Y
Sbjct: 68 DDCDTCIRLDSKFIKGY 84
>pdb|4DQU|A Chain A, Mycobacterium Tuberculosis Inha-D148g Mutant In Complex
With Nadh
Length = 269
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 387 TLIELFVTKGRIYKHAGD---VLEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLIKEA 442
L+ + G I D + AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 133 ALLPIMNPGGSIVGMGFDPSRAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAG 192
Query: 443 E 443
Sbjct: 193 P 193
>pdb|2AQH|A Chain A, Crystal Structure Of Isoniazid-Resistant I21v
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh
Length = 269
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 406 LEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLIKEAE 443
+ AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 155 MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGP 193
>pdb|2AQI|A Chain A, Crystal Structure Of Isoniazid-Resistant I47t
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh
Length = 269
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 406 LEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLIKEAE 443
+ AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 155 MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGP 193
>pdb|2IE0|A Chain A, Crystal Structure Of Isoniazid-Resistant I21v
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh- Inh
Length = 268
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 406 LEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLIKEAE 443
+ AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 154 MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGP 192
>pdb|1BVR|A Chain A, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|B Chain B, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|C Chain C, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|D Chain D, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|E Chain E, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|1BVR|F Chain F, M.Tb. Enoyl-Acp Reductase (Inha) In Complex With Nad+ And
C16-Fatty- Acyl-Substrate
pdb|2IDZ|A Chain A, Crystal Structure Of Wild Type Enoyl-Acp(Coa) Reductase
From Mycobacterium Tuberculosis In Complex With Nadh-Inh
Length = 268
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 406 LEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLIKEAE 443
+ AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 154 MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGP 192
>pdb|1P44|A Chain A, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|B Chain B, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|C Chain C, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|D Chain D, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|E Chain E, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P44|F Chain F, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P45|A Chain A, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|1P45|B Chain B, Targeting Tuberculosis And Malaria Through Inhibition Of
Enoyl Reductase: Compound Activity And Structural Data
pdb|2B35|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B35|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By Triclosan
pdb|2B36|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B36|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Pentyl-2-Phenoxyphenol
pdb|2B37|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2B37|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Inhibited By 5-Octyl-2-Phenoxyphenol
pdb|2AQ8|A Chain A, Crystal Structure Of Wild-type Of Enoyl-acp(coa) Reductase
From Mycobacterium Tuberculosis In Complex With Nadh.
pdb|2H7I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
1-Cyclohexyl-5-Oxo-N-Phenylpyrrolidine-3-Carboxamide
pdb|2H7L|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
N-(3-Bromophenyl)-1-Cyclohexyl-5-Oxopyrrolidine-3-
Carboxamide
pdb|2H7M|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
1-Cyclohexyl-N-(3,5-Dichlorophenyl)-5-Oxopyrrolidine-
3-Carboxamide
pdb|2H7N|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
N-(5-Chloro-2-Methylphenyl)-1-Cyclohexyl-5-
Oxopyrrolidine-3-Carboxamide
pdb|2H7P|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Enoyl
Reductase (Inha) Complexed With
N-(3-Chloro-2-Methylphenyl)-1-Cyclohexyl- 5-
Oxopyrrolidine-3-Carboxamide
pdb|2NSD|A Chain A, Enoyl Acyl Carrier Protein Reductase Inha In Complex With
N- (4-Methylbenzoyl)-4-Benzylpiperidine
pdb|2NSD|B Chain B, Enoyl Acyl Carrier Protein Reductase Inha In Complex With
N- (4-Methylbenzoyl)-4-Benzylpiperidine
pdb|2PR2|A Chain A, Structure Of Mycobacterium Tuberculosis Enoyl-Acp
Reductase With Bound Inh-Nadp.
pdb|3FNE|A Chain A, Crystal Structure Of Inha Bound To Triclosan Derivative 17
pdb|3FNE|B Chain B, Crystal Structure Of Inha Bound To Triclosan Derivative 17
pdb|3FNE|C Chain C, Crystal Structure Of Inha Bound To Triclosan Derivative 17
pdb|3FNE|D Chain D, Crystal Structure Of Inha Bound To Triclosan Derivative 17
pdb|3FNF|A Chain A, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNF|B Chain B, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNF|C Chain C, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNF|D Chain D, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNG|A Chain A, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|3FNH|A Chain A, Crystal Structure Of Inha Bound To Triclosan Derivative
pdb|2X22|A Chain A, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X22|B Chain B, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X23|A Chain A, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X23|B Chain B, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X23|E Chain E, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|2X23|G Chain G, Crystal Structure Of M. Tuberculosis Inha Inhibited By
Pt70
pdb|3OEW|A Chain A, Crystal Structure Of Wild-Type Inha:nadh Complex
pdb|4DRE|A Chain A, Mycobacterium Tuberculosis Inha In Complex With Nadh
Length = 269
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 406 LEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLIKEAE 443
+ AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 155 MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGP 193
>pdb|2AQK|A Chain A, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh
pdb|4DTI|A Chain A, Mycobacterium Tuberculosis Inha-S94a Mutant In Complex
With Nadh
Length = 269
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 406 LEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLIKEAE 443
+ AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 155 MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGP 193
>pdb|2IEB|A Chain A, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis In Complex With Nadh- Inh
pdb|2IED|A Chain A, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis Uncomplexed
pdb|2IED|B Chain B, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis Uncomplexed
pdb|2IED|C Chain C, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis Uncomplexed
pdb|2IED|D Chain D, Crystal Structure Of Isoniazid-Resistant S94a
Enoyl-Acp(Coa) Reductase Mutant Enzyme From
Mycobacterium Tuberculosis Uncomplexed
Length = 268
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 406 LEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLIKEAE 443
+ AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 154 MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGP 192
>pdb|2NV6|A Chain A, Mycobacterium Tuberculosis Inha (S94a) Bound With Inh-Nad
Adduct
pdb|1ENZ|A Chain A, Crystal Structure And Function Of The Isoniazid Target Of
Mycobacterium Tuberculosis
Length = 268
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 406 LEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLIKEAE 443
+ AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 154 MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGP 192
>pdb|2H9I|A Chain A, Mycobacterium Tuberculosis Inha Bound With Eth-Nad Adduct
pdb|2NTJ|A Chain A, Mycobacterium Tuberculosis Inha Bound With Pth-Nad Adduct
pdb|2NTJ|B Chain B, Mycobacterium Tuberculosis Inha Bound With Pth-Nad Adduct
pdb|1ENY|A Chain A, Crystal Structure And Function Of The Isoniazid Target Of
Mycobacterium Tuberculosis
pdb|1ZID|A Chain A, Long Fatty Acid Chain Enoyl-Acp Reductase (Inha) In
Complex With An Isonicotinic-Acyl-Nadh Inhibitor
Length = 268
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 406 LEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLIKEAE 443
+ AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 154 MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGP 192
>pdb|3OEY|A Chain A, Crystal Structure Of Inha_t266e:nadh Complex
Length = 269
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 406 LEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLIKEAE 443
+ AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 155 MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGP 193
>pdb|3OF2|A Chain A, Crystal Structure Of Inha_t266d:nadh Complex
Length = 269
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 406 LEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLIKEAE 443
+ AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 155 MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGP 193
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 42 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 90
G +EA EY ++ L D +S W+ G YDEAI+ Y+ AL+
Sbjct: 17 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 536 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
G +EA EY ++ L D +S W+ G YDEAI+ Y+ AL+
Sbjct: 17 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
>pdb|2NTV|A Chain A, Mycobacterium Leprae Inha Bound With Pth-Nad Adduct
pdb|2NTV|B Chain B, Mycobacterium Leprae Inha Bound With Pth-Nad Adduct
Length = 268
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 406 LEAYKWLDEAQS-LDTADRYINSKCAKYMLRANLI 439
+ AY W+ A+S L++ +R++ + KY +R+NL+
Sbjct: 154 MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLV 188
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 347 EVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVL 406
E++P +A W + L Y GD KA+ Y A++ P + + +G Y GD
Sbjct: 37 ELDPNNASAW--YNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQ 94
Query: 407 EA 408
+A
Sbjct: 95 KA 96
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 28/228 (12%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
+ K I T P +A L G N G A + + + D + G + +
Sbjct: 158 YLKAIETQPNFAVAWSNL---GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133
+ +D A+ Y AL ++ + +L+ + + ++ +T + L+P
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP------ 268
Query: 134 IGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDF---------EHSELLLYQSMVIQDS 184
H D CN+ A ++ V + D H++ L + + ++
Sbjct: 269 ----------HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318
Query: 185 GDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLI 232
G++EEAV+ + E + ++ + G+ EA+ HY+ I
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
>pdb|3TMG|A Chain A, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|B Chain B, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|C Chain C, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
pdb|3TMG|D Chain D, Crystal Structure Of Glycine Betaine, L-Proline Abc
Transporter, GlycineBETAINEL-Proline-Binding Protein
(Prox) From Borrelia Burgdorferi
Length = 280
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 40 CLGRKEEAYEYVRRGLRND------LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 93
+G E + VR GL ND + H W +L DK E K YRNA+++
Sbjct: 202 IMGGIESVHTLVRLGLENDDFDAYYVFDHFYWSDDLILPLMDKNDKEPGKEYRNAVEFVE 261
Query: 94 DNIQIMR 100
N +I++
Sbjct: 262 KNKEIVK 268
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 534 CLGRKEEAYEYVRRGLRND------LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 587
+G E + VR GL ND + H W +L DK E K YRNA+++
Sbjct: 202 IMGGIESVHTLVRLGLENDDFDAYYVFDHFYWSDDLILPLMDKNDKEPGKEYRNAVEFVE 261
Query: 588 DNIQIMR 594
N +I++
Sbjct: 262 KNKEIVK 268
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 219 GQYNEAMKHYESLIERNQENT-LY------YNKLVEAK-QLTNNDDIFQLLTHYISKY 268
G Y +AMKHY I+RN ++ LY Y KL+E + L + ++ QL +I Y
Sbjct: 30 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY 87
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
Ananatis
Length = 501
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 578 CYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQR 637
C+ + + +DN Q + + Q RD+EGYR+ + + + + T L+++
Sbjct: 90 CWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRD 149
Query: 638 LGRWGDTLKKCHEVDRHFSEI---IEDQ-----FDFHT 667
+ R L K +S++ IED+ F FH+
Sbjct: 150 MLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHS 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,573,113
Number of Sequences: 62578
Number of extensions: 895619
Number of successful extensions: 2372
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2297
Number of HSP's gapped (non-prelim): 91
length of query: 724
length of database: 14,973,337
effective HSP length: 106
effective length of query: 618
effective length of database: 8,340,069
effective search space: 5154162642
effective search space used: 5154162642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)