Query psy6603
Match_columns 724
No_of_seqs 1212 out of 3508
Neff 11.9
Searched_HMMs 46136
Date Fri Aug 16 22:21:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1156|consensus 100.0 2.6E-57 5.6E-62 426.6 52.7 551 1-712 16-569 (700)
2 TIGR02917 PEP_TPR_lipo putativ 100.0 5.2E-49 1.1E-53 445.8 71.5 658 5-710 138-819 (899)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 4.7E-49 1E-53 446.2 70.6 641 25-712 122-787 (899)
4 KOG4626|consensus 100.0 5E-52 1.1E-56 387.7 34.4 459 2-617 58-517 (966)
5 KOG4626|consensus 100.0 4E-48 8.6E-53 361.8 36.5 469 27-652 47-517 (966)
6 PRK11447 cellulose synthase su 100.0 2.7E-44 5.9E-49 402.9 64.5 614 4-654 40-740 (1157)
7 PRK11447 cellulose synthase su 100.0 1.3E-41 2.8E-46 381.4 65.5 582 25-690 25-733 (1157)
8 KOG2002|consensus 100.0 2.7E-42 5.9E-47 340.3 52.0 582 8-654 146-745 (1018)
9 PF12569 NARP1: NMDA receptor- 100.0 3.8E-42 8.1E-47 338.2 45.5 392 169-719 2-399 (517)
10 KOG2002|consensus 100.0 2.2E-38 4.7E-43 312.9 50.4 576 9-688 111-736 (1018)
11 PRK09782 bacteriophage N4 rece 100.0 5.6E-38 1.2E-42 334.1 57.3 566 4-623 56-710 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.3E-35 2.7E-40 316.2 56.7 581 28-654 44-706 (987)
13 TIGR00990 3a0801s09 mitochondr 100.0 3.7E-36 8.1E-41 317.1 51.7 260 359-658 335-601 (615)
14 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-35 2.6E-40 313.2 49.9 415 28-592 127-578 (615)
15 PRK10049 pgaA outer membrane p 100.0 1.1E-31 2.3E-36 287.8 45.9 180 12-203 2-181 (765)
16 KOG2076|consensus 100.0 5E-29 1.1E-33 245.5 54.9 574 28-660 139-855 (895)
17 PRK15174 Vi polysaccharide exp 100.0 3E-31 6.4E-36 277.9 41.8 346 2-451 52-402 (656)
18 PRK10049 pgaA outer membrane p 100.0 2E-30 4.4E-35 278.0 48.8 440 48-626 2-463 (765)
19 PRK15174 Vi polysaccharide exp 100.0 2.3E-30 5E-35 271.2 47.3 361 26-587 40-405 (656)
20 KOG0547|consensus 100.0 2.9E-30 6.3E-35 235.9 39.3 430 29-623 116-570 (606)
21 PLN03077 Protein ECB2; Provisi 100.0 7.2E-29 1.6E-33 272.8 53.6 605 3-654 62-720 (857)
22 PLN03077 Protein ECB2; Provisi 100.0 3.3E-29 7.2E-34 275.4 50.8 564 5-620 99-721 (857)
23 PRK14574 hmsH outer membrane p 100.0 2.7E-27 5.9E-32 247.4 53.2 487 21-626 27-520 (822)
24 KOG0547|consensus 100.0 1.2E-28 2.7E-33 225.4 36.0 414 1-591 124-572 (606)
25 KOG0495|consensus 100.0 4.1E-26 8.8E-31 216.2 50.9 534 6-597 265-892 (913)
26 KOG2076|consensus 100.0 7.3E-26 1.6E-30 223.5 52.3 570 2-652 149-893 (895)
27 PLN03081 pentatricopeptide (PP 100.0 6.4E-26 1.4E-30 243.3 48.9 194 357-585 362-557 (697)
28 PLN03081 pentatricopeptide (PP 100.0 1.1E-25 2.3E-30 241.6 45.9 464 30-620 89-558 (697)
29 PLN03218 maturation of RBCL 1; 100.0 2.6E-24 5.7E-29 231.7 55.5 528 31-662 373-915 (1060)
30 KOG1173|consensus 100.0 5.7E-26 1.2E-30 212.4 36.8 478 3-598 27-531 (611)
31 KOG0548|consensus 100.0 1.1E-25 2.4E-30 209.8 38.0 434 32-615 6-485 (539)
32 PRK14574 hmsH outer membrane p 100.0 2.9E-24 6.4E-29 224.8 50.5 464 56-657 28-516 (822)
33 KOG0495|consensus 100.0 7.5E-23 1.6E-27 194.3 54.3 546 41-657 264-849 (913)
34 PLN03218 maturation of RBCL 1; 100.0 2E-23 4.4E-28 225.0 55.8 507 43-651 352-873 (1060)
35 KOG1127|consensus 100.0 2.3E-24 4.9E-29 214.0 43.0 378 218-650 471-909 (1238)
36 KOG2003|consensus 100.0 1.4E-24 2.9E-29 197.2 33.2 450 6-604 215-708 (840)
37 KOG2003|consensus 100.0 1.6E-24 3.5E-29 196.7 33.7 489 131-672 202-703 (840)
38 KOG1155|consensus 99.9 2E-23 4.3E-28 190.4 39.9 420 30-611 80-528 (559)
39 KOG1127|consensus 99.9 3.5E-23 7.6E-28 205.7 44.2 649 7-716 383-1130(1238)
40 PRK11788 tetratricopeptide rep 99.9 2.6E-24 5.7E-29 216.6 37.2 306 28-451 35-346 (389)
41 KOG1126|consensus 99.9 2.6E-25 5.7E-30 212.8 25.3 305 30-457 319-625 (638)
42 KOG0548|consensus 99.9 1.2E-23 2.5E-28 196.4 34.9 252 358-650 227-485 (539)
43 KOG0624|consensus 99.9 2E-23 4.3E-28 182.8 33.4 221 23-272 33-257 (504)
44 KOG1126|consensus 99.9 3.6E-25 7.8E-30 211.9 24.3 293 7-424 334-626 (638)
45 KOG1155|consensus 99.9 8.2E-23 1.8E-27 186.4 36.9 375 60-595 162-546 (559)
46 PRK11788 tetratricopeptide rep 99.9 1.9E-23 4.1E-28 210.4 35.5 305 100-584 39-346 (389)
47 KOG0624|consensus 99.9 2.6E-22 5.7E-27 175.8 36.6 346 168-598 35-383 (504)
48 KOG1173|consensus 99.9 7.9E-22 1.7E-26 184.9 39.9 464 32-623 20-522 (611)
49 KOG1915|consensus 99.9 2.3E-19 5E-24 164.4 48.3 494 49-661 60-592 (677)
50 KOG4162|consensus 99.9 7.4E-21 1.6E-25 185.1 40.0 445 24-590 319-788 (799)
51 KOG4162|consensus 99.9 7.8E-20 1.7E-24 178.1 39.5 462 38-623 294-787 (799)
52 KOG1915|consensus 99.9 1.4E-17 3.1E-22 152.9 50.5 472 13-601 60-551 (677)
53 KOG1156|consensus 99.9 2.3E-18 5.1E-23 164.5 42.6 416 25-593 4-442 (700)
54 TIGR00540 hemY_coli hemY prote 99.9 1.2E-19 2.7E-24 180.8 35.6 209 29-240 85-298 (409)
55 KOG1174|consensus 99.9 2.1E-18 4.5E-23 155.5 37.4 449 28-598 39-513 (564)
56 KOG1174|consensus 99.9 8.6E-19 1.9E-23 157.9 34.1 416 25-564 94-513 (564)
57 PRK11189 lipoprotein NlpI; Pro 99.9 4.9E-20 1.1E-24 174.2 27.3 232 6-248 40-280 (296)
58 PF13429 TPR_15: Tetratricopep 99.9 1.1E-21 2.3E-26 186.1 15.6 263 32-417 12-276 (280)
59 KOG3785|consensus 99.9 2.5E-17 5.4E-22 145.6 40.2 464 38-628 32-499 (557)
60 PRK10747 putative protoheme IX 99.9 1.4E-18 3E-23 172.2 36.8 240 29-271 85-327 (398)
61 KOG2376|consensus 99.9 5.1E-17 1.1E-21 153.8 44.0 470 2-578 22-513 (652)
62 KOG1129|consensus 99.9 1.3E-19 2.8E-24 158.0 24.2 201 358-623 259-462 (478)
63 PF13429 TPR_15: Tetratricopep 99.9 3E-21 6.5E-26 183.1 14.7 257 2-267 18-277 (280)
64 PRK12370 invasion protein regu 99.9 1.1E-19 2.4E-24 188.2 27.1 229 30-267 260-502 (553)
65 COG3063 PilF Tfp pilus assembl 99.9 3E-19 6.5E-24 148.7 23.6 212 352-626 32-243 (250)
66 TIGR00540 hemY_coli hemY prote 99.9 3.8E-18 8.3E-23 170.1 34.0 230 361-654 159-399 (409)
67 KOG1125|consensus 99.8 1.2E-19 2.6E-24 171.4 21.0 239 360-621 290-529 (579)
68 PRK12370 invasion protein regu 99.8 2.2E-18 4.8E-23 178.5 31.2 206 57-269 251-472 (553)
69 KOG1129|consensus 99.8 2.9E-19 6.2E-24 155.9 19.4 263 3-273 190-464 (478)
70 KOG0550|consensus 99.8 1.6E-18 3.4E-23 156.5 23.5 299 29-454 50-352 (486)
71 COG3063 PilF Tfp pilus assembl 99.8 3.7E-18 8.1E-23 142.2 22.8 206 63-273 36-242 (250)
72 PRK10747 putative protoheme IX 99.8 3.6E-17 7.8E-22 162.1 32.4 256 3-271 95-361 (398)
73 KOG1125|consensus 99.8 1.4E-18 3E-23 164.3 20.9 237 32-273 289-533 (579)
74 KOG0550|consensus 99.8 4E-18 8.6E-23 153.9 22.4 357 170-656 48-425 (486)
75 PRK11189 lipoprotein NlpI; Pro 99.8 4.4E-18 9.6E-23 161.0 23.7 237 323-604 42-285 (296)
76 TIGR02521 type_IV_pilW type IV 99.8 1.4E-17 3E-22 155.5 26.2 198 28-232 31-230 (234)
77 COG2956 Predicted N-acetylgluc 99.8 3.2E-16 7E-21 137.1 32.1 235 31-268 38-279 (389)
78 KOG3785|consensus 99.8 2.1E-15 4.6E-20 133.5 37.1 458 2-520 32-495 (557)
79 TIGR02521 type_IV_pilW type IV 99.8 3.4E-17 7.4E-22 152.9 26.3 204 61-269 30-234 (234)
80 PLN02789 farnesyltranstransfer 99.8 1.1E-16 2.3E-21 150.2 26.0 216 29-251 38-267 (320)
81 KOG2047|consensus 99.8 1.9E-13 4.1E-18 131.0 47.0 536 52-653 17-614 (835)
82 KOG1840|consensus 99.8 5.1E-15 1.1E-19 144.9 35.2 258 168-550 196-478 (508)
83 PLN02789 farnesyltranstransfer 99.8 3.3E-16 7.2E-21 146.9 25.8 231 4-243 49-311 (320)
84 COG2956 Predicted N-acetylgluc 99.8 4.9E-15 1.1E-19 129.8 30.6 234 103-451 42-277 (389)
85 KOG2376|consensus 99.8 1.1E-13 2.3E-18 131.6 41.6 432 104-656 20-489 (652)
86 PF12569 NARP1: NMDA receptor- 99.8 4.6E-14 9.9E-19 140.4 41.1 304 4-386 16-336 (517)
87 KOG1840|consensus 99.7 1.6E-15 3.5E-20 148.4 26.8 245 23-267 194-479 (508)
88 KOG2047|consensus 99.7 3.4E-11 7.4E-16 115.9 53.8 377 47-452 45-454 (835)
89 TIGR03302 OM_YfiO outer membra 99.7 1.6E-15 3.5E-20 140.2 22.0 192 22-237 27-235 (235)
90 cd05804 StaR_like StaR_like; a 99.7 8.4E-14 1.8E-18 138.3 35.3 175 58-237 2-180 (355)
91 cd05804 StaR_like StaR_like; a 99.7 4.4E-14 9.5E-19 140.3 32.6 205 24-236 2-217 (355)
92 COG3071 HemY Uncharacterized e 99.7 6.9E-13 1.5E-17 120.6 35.1 299 31-417 87-389 (400)
93 KOG4340|consensus 99.6 1.7E-12 3.6E-17 112.7 30.0 431 73-597 21-455 (459)
94 PRK15359 type III secretion sy 99.6 5.8E-15 1.3E-19 122.4 14.3 127 11-142 12-138 (144)
95 TIGR03302 OM_YfiO outer membra 99.6 4.2E-14 9.1E-19 130.7 21.2 190 57-270 28-235 (235)
96 KOG3060|consensus 99.6 2.9E-12 6.4E-17 108.8 26.1 184 357-605 54-240 (289)
97 KOG2053|consensus 99.6 2.1E-09 4.6E-14 108.2 50.1 232 3-238 20-259 (932)
98 PRK15359 type III secretion sy 99.6 1.1E-13 2.4E-18 114.7 15.3 126 47-182 12-137 (144)
99 KOG4340|consensus 99.5 5.3E-12 1.1E-16 109.7 24.2 254 3-269 21-307 (459)
100 COG5010 TadD Flp pilus assembl 99.5 7.9E-13 1.7E-17 113.7 19.0 183 369-617 47-229 (257)
101 PRK14720 transcript cleavage f 99.5 7.6E-13 1.6E-17 137.6 22.0 226 23-272 26-311 (906)
102 PRK10370 formate-dependent nit 99.5 3.9E-13 8.5E-18 117.8 15.9 124 41-164 52-178 (198)
103 PRK10370 formate-dependent nit 99.5 4.6E-13 1E-17 117.4 16.2 126 5-132 52-180 (198)
104 PRK14720 transcript cleavage f 99.5 8.3E-12 1.8E-16 130.1 27.1 267 56-423 25-311 (906)
105 COG3071 HemY Uncharacterized e 99.5 9.9E-11 2.2E-15 106.8 29.3 279 362-656 91-392 (400)
106 KOG3060|consensus 99.5 2E-11 4.3E-16 103.9 23.0 200 42-248 26-234 (289)
107 KOG1130|consensus 99.5 1.3E-12 2.8E-17 118.6 16.9 277 31-418 20-344 (639)
108 KOG1130|consensus 99.5 1.8E-12 3.9E-17 117.7 17.2 290 360-712 22-352 (639)
109 PRK04841 transcriptional regul 99.5 8.4E-10 1.8E-14 124.4 41.8 393 65-590 344-765 (903)
110 TIGR02552 LcrH_SycD type III s 99.5 1.4E-12 3E-17 108.7 14.7 119 13-133 4-122 (135)
111 COG5010 TadD Flp pilus assembl 99.5 9.4E-12 2E-16 107.2 19.5 175 47-229 52-226 (257)
112 PRK15179 Vi polysaccharide bio 99.5 3E-12 6.5E-17 132.7 19.7 148 11-160 71-218 (694)
113 PRK04841 transcriptional regul 99.5 5.1E-10 1.1E-14 126.2 39.4 87 366-452 664-760 (903)
114 KOG0553|consensus 99.4 1.6E-12 3.5E-17 114.1 13.0 119 28-146 81-199 (304)
115 PRK15363 pathogenicity island 99.4 4.6E-12 9.9E-17 101.7 14.4 103 25-127 32-134 (157)
116 KOG1128|consensus 99.4 9.1E-12 2E-16 122.0 18.4 131 524-656 487-618 (777)
117 PRK15179 Vi polysaccharide bio 99.4 1.1E-11 2.5E-16 128.5 20.4 190 517-711 81-271 (694)
118 COG4783 Putative Zn-dependent 99.4 5E-11 1.1E-15 111.9 20.6 153 59-235 303-455 (484)
119 TIGR02552 LcrH_SycD type III s 99.4 9.6E-12 2.1E-16 103.6 14.4 115 49-163 4-118 (135)
120 PRK15363 pathogenicity island 99.4 2E-11 4.4E-16 98.0 15.0 111 55-165 27-138 (157)
121 PF04733 Coatomer_E: Coatomer 99.4 3.3E-11 7.1E-16 112.1 17.4 249 363-624 9-270 (290)
122 KOG1128|consensus 99.4 3E-11 6.5E-16 118.5 17.4 227 22-270 392-619 (777)
123 KOG3617|consensus 99.4 1E-07 2.2E-12 95.2 41.4 397 4-493 740-1172(1416)
124 PF04733 Coatomer_E: Coatomer 99.3 1.3E-11 2.8E-16 114.7 13.2 255 2-273 11-271 (290)
125 KOG0553|consensus 99.3 5.7E-12 1.2E-16 110.7 10.0 110 2-113 91-200 (304)
126 PRK10866 outer membrane biogen 99.3 1.2E-09 2.6E-14 99.1 24.2 181 27-231 31-238 (243)
127 PF13525 YfiO: Outer membrane 99.3 1.1E-09 2.3E-14 97.3 22.4 175 27-225 4-198 (203)
128 COG4783 Putative Zn-dependent 99.3 1.1E-09 2.4E-14 103.1 22.8 152 26-201 304-455 (484)
129 PLN03088 SGT1, suppressor of 99.3 1E-10 2.2E-15 113.5 15.2 114 30-143 4-117 (356)
130 KOG2300|consensus 99.2 2.3E-06 5E-11 80.6 43.0 180 357-554 325-517 (629)
131 PRK10866 outer membrane biogen 99.2 4.1E-09 9E-14 95.7 22.5 180 170-415 31-238 (243)
132 PF13525 YfiO: Outer membrane 99.2 6.3E-09 1.4E-13 92.4 22.1 174 170-409 4-198 (203)
133 KOG3616|consensus 99.2 5.2E-06 1.1E-10 82.4 43.1 573 3-653 455-1133(1636)
134 PLN03088 SGT1, suppressor of 99.2 2.2E-10 4.7E-15 111.2 12.0 106 2-109 12-117 (356)
135 TIGR02795 tol_pal_ybgF tol-pal 99.2 8.2E-10 1.8E-14 89.8 13.4 106 28-133 2-113 (119)
136 PF13414 TPR_11: TPR repeat; P 99.2 8.5E-11 1.8E-15 84.0 6.3 67 521-587 2-69 (69)
137 CHL00033 ycf3 photosystem I as 99.2 1.3E-09 2.9E-14 94.1 15.0 128 2-129 9-153 (168)
138 COG4235 Cytochrome c biogenesi 99.2 3.7E-09 7.9E-14 94.2 17.7 118 44-161 138-258 (287)
139 PRK02603 photosystem I assembl 99.1 1.7E-09 3.6E-14 93.7 15.4 114 16-129 23-153 (172)
140 KOG2053|consensus 99.1 4.1E-06 9E-11 85.3 40.8 445 2-458 53-542 (932)
141 COG3898 Uncharacterized membra 99.1 9.7E-07 2.1E-11 80.7 32.6 300 32-418 88-392 (531)
142 PF13414 TPR_11: TPR repeat; P 99.1 2E-10 4.2E-15 82.1 7.5 67 27-93 2-69 (69)
143 COG4235 Cytochrome c biogenesi 99.1 2.1E-09 4.5E-14 95.8 15.2 123 7-131 137-262 (287)
144 KOG2300|consensus 99.1 8.1E-06 1.8E-10 77.1 45.2 329 99-451 10-395 (629)
145 KOG3617|consensus 99.1 6.1E-06 1.3E-10 83.0 39.9 327 13-381 790-1171(1416)
146 PF12895 Apc3: Anaphase-promot 99.1 1E-10 2.2E-15 87.1 5.2 81 5-87 2-83 (84)
147 KOG1941|consensus 99.1 1.3E-07 2.9E-12 85.2 25.3 248 357-620 85-361 (518)
148 CHL00033 ycf3 photosystem I as 99.1 2.6E-09 5.7E-14 92.2 14.3 129 502-658 15-146 (168)
149 PRK02603 photosystem I assembl 99.1 7.2E-09 1.6E-13 89.8 15.4 119 59-204 32-153 (172)
150 PF13432 TPR_16: Tetratricopep 99.1 4.3E-10 9.4E-15 79.0 6.3 65 526-590 1-65 (65)
151 COG4785 NlpI Lipoprotein NlpI, 99.1 8.6E-08 1.9E-12 79.9 20.3 103 62-164 65-167 (297)
152 cd00189 TPR Tetratricopeptide 99.1 2.4E-09 5.2E-14 83.7 11.3 98 30-127 2-99 (100)
153 PRK15331 chaperone protein Sic 99.0 3.9E-09 8.5E-14 85.3 12.2 105 25-130 34-138 (165)
154 PF13432 TPR_16: Tetratricopep 99.0 8.2E-10 1.8E-14 77.6 7.5 64 33-96 2-65 (65)
155 KOG0543|consensus 99.0 5.2E-09 1.1E-13 96.7 14.3 141 471-619 213-355 (397)
156 PF09976 TPR_21: Tetratricopep 99.0 3.8E-09 8.3E-14 88.3 12.2 124 32-156 15-144 (145)
157 PF14938 SNAP: Soluble NSF att 99.0 2.5E-08 5.5E-13 94.0 19.0 98 524-621 116-227 (282)
158 PF09976 TPR_21: Tetratricopep 99.0 1.8E-08 4E-13 84.2 15.7 119 4-123 23-145 (145)
159 PF12895 Apc3: Anaphase-promot 99.0 1.1E-09 2.4E-14 81.5 7.4 80 41-121 2-83 (84)
160 COG4785 NlpI Lipoprotein NlpI, 99.0 8.4E-08 1.8E-12 79.9 18.5 197 25-236 62-268 (297)
161 KOG1070|consensus 99.0 3.4E-07 7.3E-12 97.1 27.2 215 13-235 1445-1664(1710)
162 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.3E-08 2.9E-13 82.6 13.9 108 131-242 3-113 (119)
163 KOG1941|consensus 99.0 1.7E-07 3.6E-12 84.6 21.1 232 1-234 15-275 (518)
164 KOG1070|consensus 99.0 1.3E-07 2.8E-12 100.1 23.6 218 43-268 1439-1664(1710)
165 KOG3081|consensus 99.0 3.6E-07 7.8E-12 79.2 22.1 252 2-273 18-277 (299)
166 PRK10803 tol-pal system protei 99.0 2.1E-08 4.5E-13 91.6 15.7 105 28-132 142-253 (263)
167 cd00189 TPR Tetratricopeptide 99.0 4.8E-09 1E-13 82.0 10.2 97 524-620 2-98 (100)
168 PF14938 SNAP: Soluble NSF att 99.0 2.8E-08 6E-13 93.7 16.1 209 28-237 35-269 (282)
169 COG4105 ComL DNA uptake lipopr 98.9 2E-07 4.3E-12 81.4 19.2 188 27-239 33-238 (254)
170 PRK11906 transcriptional regul 98.9 3.8E-08 8.1E-13 93.7 16.0 147 7-153 273-430 (458)
171 KOG0543|consensus 98.9 3.3E-08 7.1E-13 91.5 14.8 131 30-160 210-356 (397)
172 KOG4648|consensus 98.9 8.7E-10 1.9E-14 98.1 4.4 229 31-271 100-334 (536)
173 COG4105 ComL DNA uptake lipopr 98.9 7.6E-07 1.6E-11 77.8 22.2 189 170-424 33-239 (254)
174 PRK15331 chaperone protein Sic 98.9 4.7E-08 1E-12 79.2 13.4 103 56-158 31-133 (165)
175 PRK10803 tol-pal system protei 98.9 3E-08 6.5E-13 90.6 13.1 94 500-593 157-254 (263)
176 PRK11906 transcriptional regul 98.8 3.2E-07 7E-12 87.5 18.9 163 30-198 257-434 (458)
177 KOG3081|consensus 98.8 1.5E-06 3.3E-11 75.4 21.0 266 363-655 16-295 (299)
178 KOG2471|consensus 98.8 1.8E-05 4E-10 74.8 29.4 306 30-401 19-381 (696)
179 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 1.1E-07 2.4E-12 91.5 15.6 119 34-155 175-293 (395)
180 PF12688 TPR_5: Tetratrico pep 98.8 1E-07 2.2E-12 74.6 12.3 89 523-611 2-96 (120)
181 PRK10153 DNA-binding transcrip 98.8 1.8E-07 3.9E-12 94.7 17.5 136 28-164 339-487 (517)
182 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 7E-08 1.5E-12 92.8 13.2 113 5-122 182-294 (395)
183 PRK10153 DNA-binding transcrip 98.8 3.3E-07 7.1E-12 92.9 18.2 153 57-241 332-489 (517)
184 COG0457 NrfG FOG: TPR repeat [ 98.8 4.6E-06 1E-10 79.0 25.9 226 41-270 36-268 (291)
185 PF14559 TPR_19: Tetratricopep 98.8 1.9E-08 4.2E-13 71.5 6.5 61 41-101 4-64 (68)
186 PF13371 TPR_9: Tetratricopept 98.8 3E-08 6.6E-13 71.7 7.6 71 528-598 1-71 (73)
187 PF14559 TPR_19: Tetratricopep 98.8 1.7E-08 3.6E-13 71.8 6.1 66 533-598 2-67 (68)
188 COG1729 Uncharacterized protei 98.8 2.5E-07 5.3E-12 81.8 14.1 108 29-136 142-255 (262)
189 KOG4234|consensus 98.8 2.3E-07 5E-12 76.3 12.7 115 28-142 95-214 (271)
190 COG3898 Uncharacterized membra 98.7 1.6E-05 3.5E-10 73.1 25.3 249 5-268 133-393 (531)
191 KOG1914|consensus 98.7 0.00029 6.3E-09 68.1 41.8 214 376-618 266-500 (656)
192 COG0457 NrfG FOG: TPR repeat [ 98.7 3.2E-05 6.9E-10 73.2 29.7 224 6-237 37-268 (291)
193 PF13371 TPR_9: Tetratricopept 98.7 7.7E-08 1.7E-12 69.5 8.2 68 35-102 2-69 (73)
194 KOG3616|consensus 98.7 0.00045 9.8E-09 69.2 39.0 159 365-549 742-909 (1636)
195 PF12688 TPR_5: Tetratrico pep 98.7 5.5E-07 1.2E-11 70.5 13.1 92 64-155 3-100 (120)
196 PF13512 TPR_18: Tetratricopep 98.7 4.2E-07 9.2E-12 72.1 12.2 105 27-131 9-134 (142)
197 COG1729 Uncharacterized protei 98.7 3.1E-07 6.6E-12 81.2 12.0 97 500-596 155-255 (262)
198 PF10345 Cohesin_load: Cohesin 98.7 0.0011 2.3E-08 70.5 45.8 318 78-447 37-428 (608)
199 PF13512 TPR_18: Tetratricopep 98.7 9E-07 1.9E-11 70.2 12.9 87 130-220 10-99 (142)
200 KOG4648|consensus 98.6 2.5E-08 5.5E-13 89.0 4.4 98 360-457 102-199 (536)
201 KOG2471|consensus 98.6 1.5E-05 3.1E-10 75.5 22.0 117 26-142 238-381 (696)
202 KOG4234|consensus 98.6 6.6E-07 1.4E-11 73.7 11.7 113 134-248 99-211 (271)
203 COG4700 Uncharacterized protei 98.6 1.2E-05 2.7E-10 65.6 18.0 146 43-197 71-219 (251)
204 COG4700 Uncharacterized protei 98.6 1.5E-05 3.3E-10 65.1 18.1 155 73-234 67-222 (251)
205 KOG0985|consensus 98.5 0.0021 4.5E-08 67.2 46.9 215 421-651 982-1246(1666)
206 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 3.8E-07 8.2E-12 86.9 9.1 70 517-586 70-142 (453)
207 KOG1586|consensus 98.5 6.6E-05 1.4E-09 64.0 20.9 97 525-621 116-226 (288)
208 KOG2796|consensus 98.5 7.4E-05 1.6E-09 64.9 21.4 201 34-248 128-332 (366)
209 KOG4555|consensus 98.5 7.7E-06 1.7E-10 62.3 13.3 100 29-128 44-147 (175)
210 PF13424 TPR_12: Tetratricopep 98.5 1.5E-07 3.3E-12 69.0 4.3 68 519-586 2-76 (78)
211 KOG0985|consensus 98.5 0.0029 6.3E-08 66.2 46.3 97 389-487 1279-1375(1666)
212 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 8.3E-07 1.8E-11 84.7 9.3 69 23-91 70-141 (453)
213 KOG1585|consensus 98.4 0.00012 2.7E-09 62.9 20.7 209 24-262 27-251 (308)
214 KOG4555|consensus 98.4 5.3E-06 1.2E-10 63.1 10.0 97 524-620 45-145 (175)
215 PF06552 TOM20_plant: Plant sp 98.3 7.6E-06 1.7E-10 67.2 11.0 93 44-136 7-120 (186)
216 KOG1258|consensus 98.3 0.0044 9.4E-08 61.5 42.5 103 349-453 293-396 (577)
217 PF06552 TOM20_plant: Plant sp 98.3 2.2E-06 4.9E-11 70.2 7.7 94 8-103 7-121 (186)
218 PF10300 DUF3808: Protein of u 98.3 0.0014 3.1E-08 66.4 29.4 173 500-673 202-395 (468)
219 KOG1586|consensus 98.3 0.00035 7.5E-09 59.8 20.5 185 40-240 26-230 (288)
220 PF13424 TPR_12: Tetratricopep 98.3 2.2E-06 4.8E-11 62.7 6.9 75 127-201 2-76 (78)
221 KOG4507|consensus 98.3 0.00019 4.1E-09 69.9 20.9 104 355-458 606-711 (886)
222 KOG2796|consensus 98.3 6E-05 1.3E-09 65.5 15.0 132 29-160 178-316 (366)
223 KOG4642|consensus 98.2 8.3E-06 1.8E-10 69.6 9.4 90 33-122 15-104 (284)
224 PF07079 DUF1347: Protein of u 98.2 0.0054 1.2E-07 58.4 42.0 52 564-616 470-521 (549)
225 PF10345 Cohesin_load: Cohesin 98.2 0.013 2.8E-07 62.4 47.7 188 9-197 38-251 (608)
226 KOG2610|consensus 98.2 3.4E-05 7.3E-10 69.5 12.7 151 3-155 114-272 (491)
227 PF13428 TPR_14: Tetratricopep 98.2 3E-06 6.4E-11 53.3 4.5 40 558-597 3-42 (44)
228 KOG1914|consensus 98.2 0.0087 1.9E-07 58.4 41.8 186 371-587 309-503 (656)
229 PF04184 ST7: ST7 protein; In 98.2 0.00033 7E-09 67.5 19.2 124 33-158 173-323 (539)
230 PF07079 DUF1347: Protein of u 98.1 0.0082 1.8E-07 57.3 41.9 131 29-160 7-158 (549)
231 PF13428 TPR_14: Tetratricopep 98.1 6.3E-06 1.4E-10 51.8 5.3 39 65-103 4-42 (44)
232 KOG4642|consensus 98.1 1.3E-05 2.9E-10 68.4 8.5 98 68-165 16-113 (284)
233 KOG2610|consensus 98.1 0.00011 2.3E-09 66.4 14.3 161 34-197 109-273 (491)
234 KOG0545|consensus 98.1 0.00016 3.5E-09 62.1 14.0 116 466-594 178-302 (329)
235 PF13431 TPR_17: Tetratricopep 98.1 2.2E-06 4.7E-11 49.8 1.7 32 545-576 2-33 (34)
236 PF13431 TPR_17: Tetratricopep 98.0 4.3E-06 9.2E-11 48.6 2.6 33 578-610 1-33 (34)
237 KOG0545|consensus 98.0 0.0001 2.2E-09 63.3 11.6 105 28-132 178-300 (329)
238 PF05843 Suf: Suppressor of fo 98.0 0.00011 2.4E-09 69.1 13.1 92 65-156 4-96 (280)
239 PF05843 Suf: Suppressor of fo 98.0 0.00019 4E-09 67.5 14.4 132 30-161 3-138 (280)
240 KOG0376|consensus 97.9 2.4E-05 5.3E-10 74.6 7.4 111 30-140 6-116 (476)
241 KOG1585|consensus 97.9 0.0034 7.4E-08 54.4 18.6 95 357-451 33-138 (308)
242 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.024 5.2E-07 54.1 38.3 72 377-451 290-361 (660)
243 PF00515 TPR_1: Tetratricopept 97.9 2E-05 4.4E-10 46.3 3.5 31 558-588 3-33 (34)
244 PF13281 DUF4071: Domain of un 97.8 0.005 1.1E-07 58.8 20.7 200 10-240 124-340 (374)
245 COG3118 Thioredoxin domain-con 97.8 0.0043 9.4E-08 55.9 18.5 133 27-160 133-266 (304)
246 PF04184 ST7: ST7 protein; In 97.8 0.0031 6.7E-08 61.1 18.7 188 67-272 173-380 (539)
247 KOG1550|consensus 97.8 0.022 4.8E-07 59.5 26.9 175 44-233 228-425 (552)
248 PF10300 DUF3808: Protein of u 97.8 0.0034 7.4E-08 63.8 20.3 155 5-160 201-377 (468)
249 PF00515 TPR_1: Tetratricopept 97.8 4.7E-05 1E-09 44.7 4.3 31 64-94 3-33 (34)
250 PF07719 TPR_2: Tetratricopept 97.8 3.4E-05 7.4E-10 45.4 3.6 32 558-589 3-34 (34)
251 KOG0530|consensus 97.8 0.019 4.2E-07 50.5 21.1 187 39-232 54-251 (318)
252 KOG4507|consensus 97.8 0.0084 1.8E-07 58.9 20.8 77 358-434 645-721 (886)
253 PF02259 FAT: FAT domain; Int 97.7 0.025 5.4E-07 56.2 25.3 170 386-588 143-341 (352)
254 PF07719 TPR_2: Tetratricopept 97.7 8E-05 1.7E-09 43.8 4.6 31 64-94 3-33 (34)
255 PF08424 NRDE-2: NRDE-2, neces 97.6 0.0064 1.4E-07 58.5 18.9 164 49-235 6-184 (321)
256 KOG2396|consensus 97.6 0.07 1.5E-06 52.0 35.7 93 46-138 89-182 (568)
257 PF08631 SPO22: Meiosis protei 97.6 0.062 1.3E-06 50.7 26.0 168 73-267 4-186 (278)
258 COG3118 Thioredoxin domain-con 97.6 0.0016 3.5E-08 58.5 13.0 145 2-149 144-291 (304)
259 PF02259 FAT: FAT domain; Int 97.6 0.09 2E-06 52.2 28.5 46 357-402 254-305 (352)
260 KOG0376|consensus 97.6 8.5E-05 1.8E-09 71.0 5.2 104 2-107 14-117 (476)
261 KOG2396|consensus 97.6 0.082 1.8E-06 51.5 34.4 89 11-101 90-179 (568)
262 KOG1550|consensus 97.6 0.012 2.5E-07 61.6 20.7 253 5-271 262-542 (552)
263 PRK15180 Vi polysaccharide bio 97.5 0.1 2.2E-06 50.4 25.7 127 107-240 300-426 (831)
264 KOG0551|consensus 97.5 0.00069 1.5E-08 61.4 9.1 111 479-589 74-186 (390)
265 KOG0551|consensus 97.5 0.0034 7.4E-08 57.1 13.3 94 65-158 84-181 (390)
266 KOG0890|consensus 97.5 0.42 9.1E-06 56.2 39.7 322 101-453 1388-1732(2382)
267 KOG1258|consensus 97.4 0.17 3.6E-06 50.9 37.7 96 361-456 372-474 (577)
268 COG2976 Uncharacterized protei 97.4 0.017 3.6E-07 48.7 15.4 103 132-239 91-193 (207)
269 KOG2041|consensus 97.4 0.19 4E-06 51.1 25.1 50 495-548 887-936 (1189)
270 PF03704 BTAD: Bacterial trans 97.4 0.0068 1.5E-07 50.9 13.7 116 32-160 10-126 (146)
271 PF13281 DUF4071: Domain of un 97.4 0.09 2E-06 50.6 21.9 102 170-271 140-259 (374)
272 COG2976 Uncharacterized protei 97.3 0.022 4.9E-07 47.9 15.4 113 84-204 74-192 (207)
273 PF03704 BTAD: Bacterial trans 97.3 0.0065 1.4E-07 51.0 13.0 62 62-123 62-123 (146)
274 KOG0530|consensus 97.3 0.031 6.8E-07 49.3 16.8 200 10-215 61-269 (318)
275 PF13181 TPR_8: Tetratricopept 97.3 0.00035 7.7E-09 40.9 3.6 30 558-587 3-32 (34)
276 KOG2041|consensus 97.3 0.28 6E-06 50.0 27.2 216 14-261 643-875 (1189)
277 PF04910 Tcf25: Transcriptiona 97.2 0.022 4.7E-07 55.5 16.9 145 517-661 35-229 (360)
278 KOG1308|consensus 97.2 0.00019 4E-09 65.4 2.2 90 71-160 123-212 (377)
279 PF13181 TPR_8: Tetratricopept 97.2 0.00047 1E-08 40.4 3.1 33 523-555 2-34 (34)
280 KOG1308|consensus 97.1 0.00023 5.1E-09 64.7 2.1 97 32-128 118-214 (377)
281 PF08631 SPO22: Meiosis protei 97.1 0.26 5.6E-06 46.6 26.3 129 141-269 4-152 (278)
282 PF13176 TPR_7: Tetratricopept 97.1 0.00051 1.1E-08 40.7 2.6 28 558-585 1-28 (36)
283 COG0790 FOG: TPR repeat, SEL1 97.0 0.26 5.6E-06 47.3 22.1 166 38-219 51-236 (292)
284 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.37 8E-06 46.5 34.8 231 411-656 290-533 (660)
285 PF04910 Tcf25: Transcriptiona 96.9 0.042 9E-07 53.5 15.5 188 6-203 8-225 (360)
286 COG0790 FOG: TPR repeat, SEL1 96.9 0.43 9.2E-06 45.8 22.4 165 3-185 52-236 (292)
287 PF13174 TPR_6: Tetratricopept 96.9 0.0012 2.6E-08 38.3 3.0 31 558-588 2-32 (33)
288 PF13174 TPR_6: Tetratricopept 96.9 0.0016 3.4E-08 37.8 3.3 31 30-60 2-32 (33)
289 KOG0890|consensus 96.8 1 2.2E-05 53.3 27.0 120 135-263 1388-1508(2382)
290 PF09613 HrpB1_HrpK: Bacterial 96.8 0.11 2.4E-06 42.8 14.6 85 29-113 11-95 (160)
291 PF08424 NRDE-2: NRDE-2, neces 96.7 0.22 4.8E-06 48.1 18.5 164 83-269 6-185 (321)
292 PRK13184 pknD serine/threonine 96.7 1.4 3.1E-05 48.6 32.8 95 3-100 486-590 (932)
293 PF09613 HrpB1_HrpK: Bacterial 96.7 0.05 1.1E-06 44.8 11.7 86 355-440 10-95 (160)
294 PF04781 DUF627: Protein of un 96.6 0.029 6.3E-07 42.5 9.3 90 35-124 3-106 (111)
295 KOG3824|consensus 96.6 0.0046 9.9E-08 55.5 6.0 72 528-599 122-193 (472)
296 KOG1538|consensus 96.6 0.53 1.1E-05 47.6 20.3 206 393-653 636-845 (1081)
297 KOG3824|consensus 96.6 0.0059 1.3E-07 54.8 6.6 67 73-139 127-193 (472)
298 PRK15180 Vi polysaccharide bio 96.6 0.79 1.7E-05 44.6 26.7 129 3-133 300-428 (831)
299 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.013 2.9E-07 37.9 6.1 40 558-597 3-42 (53)
300 PF14853 Fis1_TPR_C: Fis1 C-te 96.5 0.017 3.6E-07 37.4 6.2 35 65-99 4-38 (53)
301 PF14561 TPR_20: Tetratricopep 96.4 0.051 1.1E-06 40.3 9.6 48 48-95 8-55 (90)
302 PF10602 RPN7: 26S proteasome 96.4 0.18 3.9E-06 43.4 14.1 98 355-452 36-142 (177)
303 PF13176 TPR_7: Tetratricopept 96.4 0.011 2.4E-07 34.9 4.7 25 208-232 2-26 (36)
304 PF10602 RPN7: 26S proteasome 96.3 0.058 1.3E-06 46.4 10.9 103 523-656 37-144 (177)
305 KOG0128|consensus 96.3 1.8 3.9E-05 45.6 34.2 422 12-447 99-558 (881)
306 TIGR02561 HrpB1_HrpK type III 96.3 0.25 5.5E-06 39.9 13.2 109 30-157 12-120 (153)
307 PF04053 Coatomer_WDAD: Coatom 96.3 0.14 3.1E-06 51.3 14.9 81 555-649 346-426 (443)
308 PF04781 DUF627: Protein of un 96.3 0.016 3.5E-07 43.8 6.2 90 2-91 6-107 (111)
309 KOG1464|consensus 96.3 0.79 1.7E-05 40.9 18.0 204 184-418 40-260 (440)
310 KOG3783|consensus 96.3 0.88 1.9E-05 45.3 19.3 81 23-103 262-344 (546)
311 COG4649 Uncharacterized protei 96.2 0.59 1.3E-05 38.7 14.9 34 517-550 162-195 (221)
312 PF12968 DUF3856: Domain of Un 96.2 0.32 6.9E-06 37.2 12.3 98 532-656 19-131 (144)
313 TIGR02561 HrpB1_HrpK type III 96.1 0.22 4.7E-06 40.3 12.0 83 524-606 12-94 (153)
314 PF14561 TPR_20: Tetratricopep 96.1 0.089 1.9E-06 39.1 9.3 68 81-148 7-76 (90)
315 PF04190 DUF410: Protein of un 96.1 1.2 2.6E-05 41.4 19.2 212 478-710 2-243 (260)
316 PRK10941 hypothetical protein; 96.1 0.11 2.3E-06 48.0 11.7 80 348-427 174-253 (269)
317 PF12968 DUF3856: Domain of Un 96.1 0.29 6.4E-06 37.4 11.6 69 131-199 56-128 (144)
318 PRK10941 hypothetical protein; 96.0 0.077 1.7E-06 48.9 10.7 64 101-164 186-249 (269)
319 smart00028 TPR Tetratricopepti 96.0 0.011 2.3E-07 33.9 3.4 31 558-588 3-33 (34)
320 COG4649 Uncharacterized protei 96.0 0.78 1.7E-05 38.1 16.0 121 110-233 72-195 (221)
321 KOG1538|consensus 95.9 2.3 5E-05 43.3 20.5 68 360-451 778-845 (1081)
322 PF09986 DUF2225: Uncharacteri 95.9 0.11 2.3E-06 46.3 10.8 79 519-597 115-207 (214)
323 KOG1464|consensus 95.9 1.2 2.6E-05 39.8 23.5 101 174-274 148-267 (440)
324 KOG3807|consensus 95.9 0.53 1.1E-05 43.4 14.8 116 529-656 191-306 (556)
325 COG4976 Predicted methyltransf 95.8 0.014 3E-07 50.3 4.5 61 530-590 3-63 (287)
326 KOG0128|consensus 95.8 3.3 7.2E-05 43.8 37.2 443 74-614 91-558 (881)
327 PRK13184 pknD serine/threonine 95.7 4.4 9.5E-05 45.0 28.3 132 136-272 481-625 (932)
328 smart00028 TPR Tetratricopepti 95.7 0.021 4.5E-07 32.7 3.8 29 65-93 4-32 (34)
329 KOG3364|consensus 95.6 0.1 2.2E-06 41.0 8.0 76 520-595 30-110 (149)
330 COG2909 MalT ATP-dependent tra 95.6 4.2 9.1E-05 43.6 35.5 275 315-618 426-725 (894)
331 COG2909 MalT ATP-dependent tra 95.5 4.4 9.5E-05 43.4 38.0 167 62-234 347-526 (894)
332 COG4976 Predicted methyltransf 95.4 0.03 6.4E-07 48.3 5.1 58 38-95 5-62 (287)
333 KOG2422|consensus 95.3 0.89 1.9E-05 45.5 15.0 142 517-658 279-452 (665)
334 PF09986 DUF2225: Uncharacteri 95.3 0.26 5.6E-06 43.9 10.7 92 144-235 91-195 (214)
335 COG3914 Spy Predicted O-linked 95.2 0.81 1.7E-05 46.1 14.5 102 35-136 74-182 (620)
336 KOG3807|consensus 95.1 2.7 5.9E-05 38.9 17.2 57 360-418 189-245 (556)
337 PF13374 TPR_10: Tetratricopep 94.9 0.04 8.7E-07 33.9 3.5 26 559-584 5-30 (42)
338 KOG3364|consensus 94.7 1.1 2.4E-05 35.5 11.2 38 170-207 70-107 (149)
339 KOG1310|consensus 94.4 0.17 3.7E-06 49.6 7.8 95 34-128 380-477 (758)
340 COG5191 Uncharacterized conser 94.4 0.12 2.7E-06 46.8 6.5 77 24-100 103-180 (435)
341 KOG0276|consensus 94.4 0.27 5.9E-06 49.2 9.2 101 530-649 645-745 (794)
342 COG5191 Uncharacterized conser 94.2 0.097 2.1E-06 47.5 5.2 85 54-138 99-184 (435)
343 PF04097 Nic96: Nup93/Nic96; 94.1 9.6 0.00021 40.8 20.7 18 179-196 266-283 (613)
344 KOG2422|consensus 94.0 5.9 0.00013 40.1 17.1 115 42-156 252-404 (665)
345 PF15015 NYD-SP12_N: Spermatog 93.9 1.6 3.5E-05 41.9 12.6 118 472-602 182-311 (569)
346 COG3914 Spy Predicted O-linked 93.8 4.1 8.9E-05 41.3 15.8 140 81-221 50-192 (620)
347 COG2912 Uncharacterized conser 93.7 0.86 1.9E-05 41.4 10.3 69 68-136 187-255 (269)
348 PF04053 Coatomer_WDAD: Coatom 93.7 5.9 0.00013 40.1 17.3 99 40-155 273-372 (443)
349 KOG2581|consensus 93.6 6.9 0.00015 37.7 16.1 130 108-238 138-280 (493)
350 KOG2581|consensus 93.4 7.9 0.00017 37.3 17.7 190 72-267 136-346 (493)
351 KOG1839|consensus 93.4 1.2 2.5E-05 49.7 12.5 169 359-584 936-1127(1236)
352 PF13374 TPR_10: Tetratricopep 93.3 0.13 2.8E-06 31.5 3.4 29 523-551 3-31 (42)
353 PF10579 Rapsyn_N: Rapsyn N-te 93.2 0.99 2.1E-05 31.9 7.6 36 563-598 13-48 (80)
354 COG3629 DnrI DNA-binding trans 93.0 3.3 7.3E-05 38.3 13.1 91 170-270 152-242 (280)
355 KOG1839|consensus 93.0 2 4.4E-05 47.9 13.5 172 27-198 931-1126(1236)
356 KOG0529|consensus 92.8 6 0.00013 38.3 14.7 130 10-141 47-194 (421)
357 KOG2062|consensus 92.7 15 0.00032 38.7 35.7 46 9-54 40-85 (929)
358 KOG1463|consensus 92.5 9.3 0.0002 35.9 25.6 189 393-602 132-330 (411)
359 COG1747 Uncharacterized N-term 92.4 13 0.00028 37.2 23.2 74 48-124 86-159 (711)
360 PF07720 TPR_3: Tetratricopept 92.4 0.46 1E-05 27.8 4.5 20 65-84 4-23 (36)
361 PF10516 SHNi-TPR: SHNi-TPR; 92.3 0.26 5.7E-06 29.2 3.5 30 557-586 2-31 (38)
362 COG5159 RPN6 26S proteasome re 92.2 9 0.00019 35.0 20.8 216 428-661 8-242 (421)
363 PF10579 Rapsyn_N: Rapsyn N-te 92.2 0.21 4.6E-06 35.0 3.4 61 30-90 8-71 (80)
364 KOG1310|consensus 92.1 0.9 2E-05 44.9 8.6 91 533-623 385-478 (758)
365 COG3629 DnrI DNA-binding trans 92.0 1.8 3.8E-05 40.1 10.0 68 96-163 153-220 (280)
366 KOG3783|consensus 91.9 15 0.00033 37.1 30.2 72 350-421 444-523 (546)
367 PF11207 DUF2989: Protein of u 91.8 1.5 3.3E-05 37.8 8.7 73 43-116 121-198 (203)
368 PF11817 Foie-gras_1: Foie gra 91.7 11 0.00024 34.9 17.5 60 355-414 178-243 (247)
369 KOG1920|consensus 91.7 15 0.00033 41.0 17.7 17 477-493 891-907 (1265)
370 COG1747 Uncharacterized N-term 91.6 16 0.00035 36.6 23.3 62 361-422 211-292 (711)
371 PF12862 Apc5: Anaphase-promot 91.4 0.96 2.1E-05 34.1 6.7 54 38-91 8-70 (94)
372 PF12854 PPR_1: PPR repeat 91.3 0.41 8.9E-06 27.7 3.6 29 520-548 5-33 (34)
373 PF07720 TPR_3: Tetratricopept 91.2 0.67 1.5E-05 27.2 4.3 33 29-61 2-36 (36)
374 PF07721 TPR_4: Tetratricopept 90.9 0.31 6.8E-06 26.0 2.6 23 524-546 3-25 (26)
375 PF10373 EST1_DNA_bind: Est1 D 90.9 4.8 0.0001 38.2 12.7 62 541-602 1-62 (278)
376 COG2912 Uncharacterized conser 90.9 1 2.3E-05 40.9 7.3 72 524-595 183-254 (269)
377 PF07721 TPR_4: Tetratricopept 90.8 0.39 8.5E-06 25.7 2.9 21 392-412 4-24 (26)
378 PF11207 DUF2989: Protein of u 90.8 5.8 0.00013 34.5 11.2 76 74-150 118-198 (203)
379 PF12862 Apc5: Anaphase-promot 90.8 2.5 5.3E-05 31.9 8.3 63 140-202 8-72 (94)
380 PF10516 SHNi-TPR: SHNi-TPR; 90.7 0.58 1.3E-05 27.8 3.8 28 64-91 3-30 (38)
381 COG4941 Predicted RNA polymera 90.7 8.7 0.00019 36.0 12.8 193 370-597 211-406 (415)
382 PF15015 NYD-SP12_N: Spermatog 89.7 5.4 0.00012 38.6 11.0 84 69-152 183-284 (569)
383 KOG4814|consensus 89.4 29 0.00063 36.0 30.6 93 68-160 360-458 (872)
384 PF00244 14-3-3: 14-3-3 protei 89.2 18 0.00038 33.1 15.1 59 359-417 5-65 (236)
385 PF12854 PPR_1: PPR repeat 88.0 1.4 3E-05 25.4 4.0 28 26-53 5-32 (34)
386 COG3947 Response regulator con 87.2 4 8.6E-05 37.4 8.1 56 360-415 284-339 (361)
387 KOG0546|consensus 87.1 0.95 2.1E-05 42.5 4.5 129 472-605 228-358 (372)
388 PF13041 PPR_2: PPR repeat fam 86.7 2.5 5.4E-05 27.1 5.2 28 524-551 5-32 (50)
389 KOG2114|consensus 86.2 54 0.0012 35.4 19.0 56 178-234 341-397 (933)
390 COG3947 Response regulator con 85.9 15 0.00032 33.9 10.9 61 173-233 281-341 (361)
391 PF13041 PPR_2: PPR repeat fam 85.8 4.2 9.2E-05 26.0 5.9 25 65-89 6-30 (50)
392 smart00386 HAT HAT (Half-A-TPR 85.7 2.1 4.6E-05 24.0 4.1 27 43-69 2-28 (33)
393 PF09797 NatB_MDM20: N-acetylt 85.6 20 0.00042 35.7 13.3 96 569-665 196-292 (365)
394 COG4455 ImpE Protein of avirul 85.5 8.7 0.00019 33.7 8.9 62 35-96 8-69 (273)
395 KOG0529|consensus 85.3 13 0.00028 36.2 10.9 127 8-136 91-235 (421)
396 COG4455 ImpE Protein of avirul 85.2 13 0.00028 32.7 9.8 70 529-598 8-80 (273)
397 PF10373 EST1_DNA_bind: Est1 D 85.0 4 8.7E-05 38.7 8.0 62 47-108 1-62 (278)
398 PF10255 Paf67: RNA polymerase 84.7 30 0.00065 34.3 13.4 76 461-550 117-192 (404)
399 TIGR03504 FimV_Cterm FimV C-te 84.6 1.9 4.1E-05 26.7 3.5 26 629-654 3-28 (44)
400 smart00386 HAT HAT (Half-A-TPR 84.2 2.7 5.9E-05 23.6 4.1 30 369-398 1-30 (33)
401 PF11817 Foie-gras_1: Foie gra 83.4 38 0.00082 31.4 15.8 26 31-56 13-38 (247)
402 KOG0276|consensus 83.4 16 0.00034 37.5 10.9 29 61-89 665-693 (794)
403 PF04190 DUF410: Protein of un 82.6 42 0.00092 31.3 19.1 66 94-159 88-170 (260)
404 KOG1463|consensus 82.3 46 0.001 31.6 27.3 61 174-234 131-197 (411)
405 KOG2062|consensus 82.2 74 0.0016 33.9 32.6 247 367-652 369-633 (929)
406 PF00244 14-3-3: 14-3-3 protei 82.1 41 0.00089 30.8 13.1 60 174-233 4-65 (236)
407 KOG0546|consensus 81.8 2.4 5.1E-05 40.0 4.6 102 2-103 232-350 (372)
408 PF04097 Nic96: Nup93/Nic96; 81.5 83 0.0018 34.0 26.2 20 395-414 264-283 (613)
409 PF01535 PPR: PPR repeat; Int 81.3 2.6 5.7E-05 23.3 3.2 25 559-583 3-27 (31)
410 PF09670 Cas_Cas02710: CRISPR- 81.2 40 0.00086 33.6 13.2 62 30-91 133-198 (379)
411 PRK11619 lytic murein transgly 81.0 87 0.0019 33.9 33.6 114 3-127 44-160 (644)
412 PF01535 PPR: PPR repeat; Int 80.9 2.3 5E-05 23.5 2.9 28 524-551 2-29 (31)
413 PF09670 Cas_Cas02710: CRISPR- 80.6 9.8 0.00021 37.8 8.8 54 2-57 141-198 (379)
414 TIGR03504 FimV_Cterm FimV C-te 80.3 4.2 9.1E-05 25.2 3.9 24 360-383 4-27 (44)
415 KOG2063|consensus 80.2 1E+02 0.0022 34.3 17.6 102 357-458 506-626 (877)
416 PF08311 Mad3_BUB1_I: Mad3/BUB 79.3 5.8 0.00013 31.9 5.6 44 540-583 81-126 (126)
417 KOG4318|consensus 79.2 1.1E+02 0.0023 33.8 33.2 27 629-655 1022-1048(1088)
418 smart00299 CLH Clathrin heavy 79.2 34 0.00074 28.1 14.4 51 362-413 14-64 (140)
419 KOG0889|consensus 79.1 76 0.0016 40.7 16.3 46 388-433 2811-2856(3550)
420 KOG2114|consensus 78.3 1.1E+02 0.0023 33.4 29.6 240 4-273 346-596 (933)
421 COG5159 RPN6 26S proteasome re 77.7 59 0.0013 30.0 26.4 97 174-270 128-238 (421)
422 COG5536 BET4 Protein prenyltra 77.2 61 0.0013 29.9 14.6 127 10-138 92-235 (328)
423 KOG4279|consensus 76.9 41 0.0009 35.6 11.7 169 526-720 244-427 (1226)
424 KOG4014|consensus 76.5 48 0.001 28.3 13.5 97 500-603 49-157 (248)
425 PF00637 Clathrin: Region in C 75.8 0.79 1.7E-05 38.1 -0.3 80 363-448 15-95 (143)
426 TIGR00756 PPR pentatricopeptid 75.6 5.5 0.00012 22.6 3.5 24 560-583 4-27 (35)
427 COG4941 Predicted RNA polymera 75.6 76 0.0016 30.2 17.4 161 79-247 213-407 (415)
428 PF08311 Mad3_BUB1_I: Mad3/BUB 75.4 41 0.00089 27.1 11.7 83 144-232 40-126 (126)
429 PF13226 DUF4034: Domain of un 75.2 21 0.00045 33.3 8.5 135 3-150 11-153 (277)
430 KOG0292|consensus 75.1 1.4E+02 0.0029 32.9 17.4 49 548-596 1075-1124(1202)
431 KOG1920|consensus 75.0 1.6E+02 0.0035 33.7 25.1 94 473-582 959-1052(1265)
432 cd02682 MIT_AAA_Arch MIT: doma 74.8 20 0.00043 25.4 6.4 19 574-592 31-49 (75)
433 KOG0686|consensus 74.5 81 0.0018 31.0 12.2 96 356-451 151-257 (466)
434 KOG0889|consensus 73.6 3E+02 0.0064 36.1 33.4 83 520-603 2810-2900(3550)
435 KOG4279|consensus 73.1 50 0.0011 35.1 11.2 55 41-95 256-320 (1226)
436 PF13812 PPR_3: Pentatricopept 72.9 12 0.00026 21.1 4.5 27 132-158 3-29 (34)
437 PF10255 Paf67: RNA polymerase 72.5 1.1E+02 0.0024 30.6 19.9 68 132-199 124-192 (404)
438 PF14863 Alkyl_sulf_dimr: Alky 72.4 10 0.00022 31.1 5.3 50 64-113 72-121 (141)
439 cd02680 MIT_calpain7_2 MIT: do 72.0 6.7 0.00014 27.8 3.6 33 538-585 3-35 (75)
440 TIGR00756 PPR pentatricopeptid 71.6 6.8 0.00015 22.2 3.2 28 524-551 2-29 (35)
441 PF04212 MIT: MIT (microtubule 70.4 33 0.00072 23.8 7.1 17 568-584 17-33 (69)
442 PRK11619 lytic murein transgly 70.3 1.7E+02 0.0036 31.9 41.3 125 29-164 34-163 (644)
443 cd02682 MIT_AAA_Arch MIT: doma 68.7 26 0.00056 24.9 5.9 32 631-662 12-43 (75)
444 cd02681 MIT_calpain7_1 MIT: do 68.3 8.2 0.00018 27.5 3.4 17 568-584 18-34 (76)
445 KOG0686|consensus 67.5 55 0.0012 32.1 9.5 95 558-652 152-256 (466)
446 PF14863 Alkyl_sulf_dimr: Alky 67.0 20 0.00044 29.4 5.9 49 172-220 71-119 (141)
447 COG3014 Uncharacterized protei 66.1 1.3E+02 0.0027 28.9 14.0 89 136-235 64-155 (449)
448 PF13226 DUF4034: Domain of un 65.8 63 0.0014 30.2 9.5 68 540-607 61-150 (277)
449 cd02679 MIT_spastin MIT: domai 65.7 5.5 0.00012 28.6 2.2 32 538-584 5-36 (79)
450 PHA02537 M terminase endonucle 65.5 95 0.0021 28.1 10.2 19 2-20 93-111 (230)
451 PF13812 PPR_3: Pentatricopept 65.5 11 0.00025 21.2 3.3 27 524-550 3-29 (34)
452 KOG3024|consensus 64.6 1.2E+02 0.0026 28.2 17.2 35 681-715 256-290 (312)
453 PF12739 TRAPPC-Trs85: ER-Golg 62.8 1.8E+02 0.0039 29.6 14.1 158 470-657 212-402 (414)
454 smart00101 14_3_3 14-3-3 homol 62.5 1.3E+02 0.0028 27.7 17.2 57 174-230 4-64 (244)
455 smart00299 CLH Clathrin heavy 62.4 86 0.0019 25.7 15.3 33 41-73 20-52 (140)
456 PF12739 TRAPPC-Trs85: ER-Golg 62.3 1.9E+02 0.004 29.5 15.4 28 30-57 210-237 (414)
457 PF04840 Vps16_C: Vps16, C-ter 62.2 1.6E+02 0.0034 28.6 25.5 77 359-449 212-288 (319)
458 smart00777 Mad3_BUB1_I Mad3/BU 61.6 33 0.00071 27.5 6.0 74 502-581 49-124 (125)
459 KOG4014|consensus 61.5 1.1E+02 0.0023 26.4 14.7 186 26-235 32-234 (248)
460 PHA02537 M terminase endonucle 61.4 40 0.00087 30.4 7.2 19 570-588 192-210 (230)
461 PF11846 DUF3366: Domain of un 61.0 28 0.00061 30.7 6.4 53 370-423 126-178 (193)
462 cd02680 MIT_calpain7_2 MIT: do 60.5 18 0.00038 25.7 3.8 16 75-90 19-34 (75)
463 PF05053 Menin: Menin; InterP 59.6 2.1E+02 0.0046 29.7 12.3 69 368-451 273-346 (618)
464 PF14929 TAF1_subA: TAF RNA Po 58.6 2.5E+02 0.0053 29.7 13.6 99 76-183 323-423 (547)
465 PRK12798 chemotaxis protein; R 58.4 2E+02 0.0044 28.7 23.2 177 54-235 103-287 (421)
466 smart00101 14_3_3 14-3-3 homol 58.4 1.5E+02 0.0033 27.2 17.9 56 360-415 6-65 (244)
467 PF04212 MIT: MIT (microtubule 56.6 63 0.0014 22.5 6.3 32 630-661 10-41 (69)
468 PF06957 COPI_C: Coatomer (COP 55.0 78 0.0017 31.8 8.6 109 470-592 208-336 (422)
469 cd02683 MIT_1 MIT: domain cont 53.9 72 0.0016 22.9 6.2 31 631-661 12-42 (77)
470 KOG2063|consensus 53.8 3.7E+02 0.008 30.3 17.9 170 30-199 506-712 (877)
471 cd02684 MIT_2 MIT: domain cont 52.7 22 0.00048 25.3 3.4 32 538-584 3-34 (75)
472 cd00280 TRFH Telomeric Repeat 51.9 1.2E+02 0.0026 26.2 7.9 32 180-212 120-151 (200)
473 PF07163 Pex26: Pex26 protein; 51.6 2.1E+02 0.0045 26.8 12.1 119 103-228 42-181 (309)
474 cd02683 MIT_1 MIT: domain cont 50.8 91 0.002 22.4 7.3 16 569-584 19-34 (77)
475 PF07219 HemY_N: HemY protein 50.8 74 0.0016 24.7 6.4 43 68-110 65-107 (108)
476 COG5187 RPN7 26S proteasome re 49.6 2.3E+02 0.0049 26.6 15.9 29 96-124 115-143 (412)
477 cd00280 TRFH Telomeric Repeat 49.0 1.2E+02 0.0025 26.3 7.4 47 564-611 119-165 (200)
478 PF04348 LppC: LppC putative l 48.1 6 0.00013 41.4 0.0 20 69-88 31-50 (536)
479 KOG4521|consensus 47.8 5E+02 0.011 30.0 18.4 29 357-385 922-950 (1480)
480 PF11846 DUF3366: Domain of un 47.2 64 0.0014 28.4 6.4 43 50-93 133-175 (193)
481 PF04348 LppC: LppC putative l 46.8 6.4 0.00014 41.2 0.0 114 6-119 2-121 (536)
482 TIGR02710 CRISPR-associated pr 46.7 3.1E+02 0.0067 27.3 13.3 54 34-87 136-196 (380)
483 PRK12798 chemotaxis protein; R 46.5 3.2E+02 0.0069 27.4 21.7 199 27-231 111-321 (421)
484 cd02679 MIT_spastin MIT: domai 46.4 43 0.00094 24.1 4.0 15 76-90 22-36 (79)
485 cd02678 MIT_VPS4 MIT: domain c 46.3 1.1E+02 0.0023 21.9 7.1 64 536-614 1-71 (75)
486 PRK15490 Vi polysaccharide bio 46.2 1.7E+02 0.0036 30.9 9.7 62 23-86 37-98 (578)
487 cd02677 MIT_SNX15 MIT: domain 46.1 26 0.00057 24.9 2.9 31 539-584 4-34 (75)
488 smart00671 SEL1 Sel1-like repe 44.6 49 0.0011 18.8 3.7 14 571-584 20-33 (36)
489 PF04840 Vps16_C: Vps16, C-ter 44.2 3.1E+02 0.0067 26.6 24.5 77 521-611 207-283 (319)
490 KOG0292|consensus 44.1 56 0.0012 35.5 6.0 45 534-583 655-699 (1202)
491 COG5536 BET4 Protein prenyltra 43.2 2.8E+02 0.0061 25.9 15.5 135 10-146 50-203 (328)
492 TIGR03362 VI_chp_7 type VI sec 43.1 3.1E+02 0.0067 26.3 17.7 36 75-110 112-147 (301)
493 PRK15490 Vi polysaccharide bio 43.1 1.4E+02 0.0031 31.4 8.7 81 38-120 18-98 (578)
494 PF02064 MAS20: MAS20 protein 42.3 61 0.0013 25.8 4.7 32 561-592 68-99 (121)
495 KOG1497|consensus 42.3 3.1E+02 0.0068 26.2 17.2 95 558-652 105-211 (399)
496 PF02184 HAT: HAT (Half-A-TPR) 41.6 68 0.0015 18.3 3.7 25 44-69 3-27 (32)
497 KOG2280|consensus 41.3 5.1E+02 0.011 28.3 26.0 100 365-489 694-793 (829)
498 KOG4151|consensus 41.1 93 0.002 33.5 7.1 105 32-136 57-167 (748)
499 cd02677 MIT_SNX15 MIT: domain 40.9 1.3E+02 0.0029 21.4 6.2 35 631-665 12-46 (75)
500 PF14689 SPOB_a: Sensor_kinase 40.8 1.1E+02 0.0025 20.7 6.5 28 629-656 27-54 (62)
No 1
>KOG1156|consensus
Probab=100.00 E-value=2.6e-57 Score=426.62 Aligned_cols=551 Identities=62% Similarity=0.979 Sum_probs=510.9
Q ss_pred CcccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHH
Q psy6603 1 KCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 80 (724)
Q Consensus 1 k~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 80 (724)
|+|+.|+|.+.++.++++++ ++|.+++++..+|..+...|+.++|....+.+++.++.+..+|+.+|.++...++|++
T Consensus 16 k~yE~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 16 KCYETKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence 57999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 81 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
|+++|+.|+.++|+|..++..++.+..++++++.....-.+.++..|.....|...+.++...|++..|..+++.+.+..
T Consensus 94 aiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 94 AIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccCCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcH
Q psy6603 161 QVTNS-YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENT 239 (724)
Q Consensus 161 ~~~p~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 239 (724)
...|+ ......+..+....++...|.+++|++.+..--...-+........+.++.+++++++|...|...+..+|++.
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 64444 45677888999999999999999999998876666666677888899999999999999999999999999999
Q ss_pred HHHHHHHHHhc-cCChHHHH-HHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhch
Q psy6603 240 LYYNKLVEAKQ-LTNNDDIF-QLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNT 317 (724)
Q Consensus 240 ~~~~~l~~~~~-~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (724)
.++..+-.++. ..+.-+++ ..|...-+.+|....+.++++.++.+.++...++.|++..+.+|+|.++.++.+++..+
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p 333 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDP 333 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhch
Confidence 99998888863 43444444 88999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q psy6603 318 EKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGR 397 (724)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 397 (724)
.+...+++.+..|...+...+.+...+....+|+.+.+|+++.++..+...|+++.|..+++.++...|+.++.+...|+
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaR 413 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKAR 413 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 99999999999999999999988888887889999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHH
Q psy6603 398 IYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQ 477 (724)
Q Consensus 398 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (724)
++...|++++|..++..+.++|..|..++...|...++.++.++|.+++.+..+.+......++.++|+||..+-
T Consensus 414 I~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~----- 488 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLED----- 488 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhh-----
Confidence 999999999999999999999999999999999999999999999999999888776667777777777766322
Q ss_pred hhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccc
Q psy6603 478 RLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV 557 (724)
Q Consensus 478 ~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 557 (724)
T Consensus 489 -------------------------------------------------------------------------------- 488 (700)
T KOG1156|consen 489 -------------------------------------------------------------------------------- 488 (700)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHH
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQR 637 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 637 (724)
|.+|.+
T Consensus 489 --------------------------------------------------------------------------g~ay~r 494 (700)
T KOG1156|consen 489 --------------------------------------------------------------------------GEAYLR 494 (700)
T ss_pred --------------------------------------------------------------------------hHHHHH
Confidence 224444
Q ss_pred hCChhHHHHHHHHHHHHHhhhhcccchhHHHHHhhhhHHHHHHHHhHHhhhcCChHHHHHHHHHHHHHHHhhcCC
Q psy6603 638 LGRWGDTLKKCHEVDRHFSEIIEDQFDFHTYCMRKMTLRSYVRLLRLEDVLRSHPFYYTAARCAIQVYLRLHDRP 712 (724)
Q Consensus 638 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 712 (724)
+|++.+|++-|..+-++|.++..|++|++.||+|++++|+|..+.+|+|.++++|+|.+|++.+++||++|+|.|
T Consensus 495 ~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p 569 (700)
T KOG1156|consen 495 QNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSP 569 (700)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCc
Confidence 455567888899999999999999999999999999999999999999999999999999999999999999999
No 2
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.2e-49 Score=445.85 Aligned_cols=658 Identities=15% Similarity=0.101 Sum_probs=377.7
Q ss_pred ccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHH
Q psy6603 5 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKC 84 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 84 (724)
.|++++|+..|++++. .+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..
T Consensus 138 ~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 215 (899)
T TIGR02917 138 LGQLELAQKSYEQALA--IDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215 (899)
T ss_pred cCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 4555555555555555 34444455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCC
Q psy6603 85 YRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 85 ~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p 164 (724)
|++++..+|.++.++..++.++...|++++|...++++++..|.++..++..+.++...|++++|+..++++.+.. |
T Consensus 216 ~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~ 292 (899)
T TIGR02917 216 YRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA---P 292 (899)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---C
Confidence 5555555555555555555555555555555555555555555555555555555555555555555554443332 2
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHH
Q psy6603 165 SYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNK 244 (724)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 244 (724)
+ ....+..+|.++...|++++|+..+.+++...|.+..++..++.++...|++++|+..+++++...|.++..+..
T Consensus 293 ~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 368 (899)
T TIGR02917 293 E----YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSL 368 (899)
T ss_pred C----chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 2 223444455555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHH-hccCChHHHHHHHHHHHHhCCCCCccc-cccccccCchhHHHHHHHHHHhhhh-cCCchhhhhhHHhhhchhhHH
Q psy6603 245 LVEA-KQLTNNDDIFQLLTHYISKYPKATVPK-RLSLNYVSGDQFRTEIDKYLRHGFH-KGVPPLFVNLRSLYSNTEKCK 321 (724)
Q Consensus 245 l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (724)
++.+ ...|++++|...|+++....|...... .+...+...+++.+++..+...... +..+.....+...+...++
T Consensus 369 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-- 446 (899)
T TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ-- 446 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC--
Confidence 5555 345566666666666555555432211 1112222233444444333222111 1112222223333333333
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy6603 322 IIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKH 401 (724)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 401 (724)
..+++..+.+.+.. .|.... ++..+|.++...|++++|+..|+++++.+|+++.++..++.++..
T Consensus 447 -~~~A~~~~~~~~~~------------~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 447 -FDKALAAAKKLEKK------------QPDNAS--LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred -HHHHHHHHHHHHHh------------CCCCcH--HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 22333333333321 122222 345667777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcc
Q psy6603 402 AGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGR 481 (724)
Q Consensus 402 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 481 (724)
.|++++|+..|++++..+|.+..++..++.++...|++++|...+.+++..+|.... ....++..+...|+
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE---------PALALAQYYLGKGQ 582 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh---------HHHHHHHHHHHCCC
Confidence 777777777777777777777777777777777777777777777777765554321 11235667777777
Q ss_pred hhhhhhhhhhhh--------------hHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHH
Q psy6603 482 WGDTLKKCHEVD--------------RKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRR 547 (724)
Q Consensus 482 ~~~A~~~~~~~~--------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 547 (724)
+++|+..+..+. ..+...|++++|+..++.+.. ..|.++.++..+|.++...|++++|+..|++
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA--LQPDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777666554 233444677777777766443 2234555677777777777777777777777
Q ss_pred hhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhh
Q psy6603 548 GLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWF 627 (724)
Q Consensus 548 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 627 (724)
+++.+|++..++..++.++...|++++|+..++.+.+..|+++.++..+|.++...|++++|.+.++.+....|....+
T Consensus 661 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 739 (899)
T TIGR02917 661 ALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA- 739 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHH-
Confidence 7777777777777777777777777777777777777777777777777777777777777777777766666555444
Q ss_pred hhhHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhHHHHHhhhhHHHHHHHHhHHhhh-------cCChHHHHHHHH
Q psy6603 628 QTECALAYQRLGRWGDTLKKCHEVDRHFSEIIEDQFDFHTYCMRKMTLRSYVRLLRLEDVL-------RSHPFYYTAARC 700 (724)
Q Consensus 628 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-------~~~~~~~~~~~~ 700 (724)
..++.++...|++++|++.++++++..+ + +...+.... ..|..+|++++|+ ...|....+..+
T Consensus 740 -~~l~~~~~~~g~~~~A~~~~~~~l~~~~----~--~~~~~~~la---~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 740 -IKLHRALLASGNTAEAVKTLEAWLKTHP----N--DAVLRTALA---ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred -HHHHHHHHHCCCHHHHHHHHHHHHHhCC----C--CHHHHHHHH---HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4466677777777777777766665532 2 111111111 2255566666654 344555555666
Q ss_pred HHHHHHHhhc
Q psy6603 701 AIQVYLRLHD 710 (724)
Q Consensus 701 ~~~~y~~~~~ 710 (724)
.+.+|...|+
T Consensus 810 l~~~~~~~~~ 819 (899)
T TIGR02917 810 LAWLYLELKD 819 (899)
T ss_pred HHHHHHhcCc
Confidence 6666666665
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.7e-49 Score=446.21 Aligned_cols=641 Identities=16% Similarity=0.133 Sum_probs=517.3
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 104 (724)
|..+..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|.+..++..+|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 34456777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc
Q psy6603 105 LQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS 184 (724)
Q Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 184 (724)
++...|++++|...|++++..+|.++.++..++.++...|++++|...++.+.+..+. ....++..|.++...
T Consensus 202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 274 (899)
T TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-------SPLAHYLKALVDFQK 274 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CchHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888777665532 334666778888888
Q ss_pred CCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHH
Q psy6603 185 GDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTH 263 (724)
Q Consensus 185 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~ 263 (724)
|++++|+..++++++..|+...++..+|.++...|++++|...+.+++...|.+...+..++.+ ...|++++|+..+.+
T Consensus 275 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSP 354 (899)
T ss_pred cCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888888888888877888888888888888888888888888888888877777777 567888888888888
Q ss_pred HHHhCCCCCccc-cccccccCchhHHHHHHHHHHhhh-hcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCC
Q psy6603 264 YISKYPKATVPK-RLSLNYVSGDQFRTEIDKYLRHGF-HKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFS 341 (724)
Q Consensus 264 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (724)
++...|...... .+...+...+++.++...+.+... .+..+..+..++..+...++ ...++..+.+++...
T Consensus 355 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~---- 427 (899)
T TIGR02917 355 ALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD---PSEAIADLETAAQLD---- 427 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHhhC----
Confidence 888777654322 223334445666666655443322 23445555666666655554 556666677666432
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q psy6603 342 LQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA 421 (724)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 421 (724)
|.... ....++..+...|++++|+..+++.+...|.++..+..+|.++...|++++|+.+|+++++.+|.
T Consensus 428 --------~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 428 --------PELGR--ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred --------Ccchh--hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 22222 34467888999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh--------
Q psy6603 422 DRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVD-------- 493 (724)
Q Consensus 422 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-------- 493 (724)
+...+..++.++...|++++|...+++++...|.... ....++.++...|++++|+..+.++.
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 568 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR---------AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE 568 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh
Confidence 9999999999999999999999999999987665322 23447999999999999999998774
Q ss_pred ------hHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHh
Q psy6603 494 ------RKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567 (724)
Q Consensus 494 ------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 567 (724)
..+...|++++|+..++.+.. ..|.++.+|..+|.++...|++++|+..|+++++.+|.++.++..+|.++.
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYA 646 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344556999999999998665 445677899999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHHHHhCChhHHHH
Q psy6603 568 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ-CMWFQTECALAYQRLGRWGDTLK 646 (724)
Q Consensus 568 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 646 (724)
..|++++|+..|+++++.+|++..++..++.++...|+++.|...++.+....|.. ..+ ..+|.++...|++++|++
T Consensus 647 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGF--ELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHH--HHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877665 444 568899999999999999
Q ss_pred HHHHHHHHHhhhhcccchhHHHHHhhhhHHHHHHHHhHHhhh-------cCChHHHHHHHHHHHHHHHhhcCC
Q psy6603 647 KCHEVDRHFSEIIEDQFDFHTYCMRKMTLRSYVRLLRLEDVL-------RSHPFYYTAARCAIQVYLRLHDRP 712 (724)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-------~~~~~~~~~~~~~~~~y~~~~~~~ 712 (724)
.|++++...++. .... . ....+.+.|++++++ +..|....+....+.+|..+|+..
T Consensus 725 ~~~~~~~~~~~~-------~~~~-~--l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 725 AYRKALKRAPSS-------QNAI-K--LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHHHHhhCCCc-------hHHH-H--HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 999999874322 1111 1 123367777777765 466777788888999999888754
No 4
>KOG4626|consensus
Probab=100.00 E-value=5e-52 Score=387.75 Aligned_cols=459 Identities=15% Similarity=0.141 Sum_probs=300.6
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
.|+.|+|++|++.+..+-. .+|.+.+.+..++.++++..+++.....-..+++.+|...+++.++|.++...|++++|
T Consensus 58 ~yq~gd~~~a~~h~nmv~~--~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~a 135 (966)
T KOG4626|consen 58 LYQGGDYKQAEKHCNMVGQ--EDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDA 135 (966)
T ss_pred HHhccCHHHHHHHHhHhhc--cCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHH
Confidence 3555666666666666555 45555556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQ 161 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 161 (724)
+..|+.++++.|++.++|.++|.++...|+.+.|..+|..+++++|....+...+|.++...|+..+|...|.++++..
T Consensus 136 l~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q- 214 (966)
T KOG4626|consen 136 LALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ- 214 (966)
T ss_pred HHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-
Confidence 6666666666666666666666666666666666666666666666666666666666666666666665555444433
Q ss_pred cCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHH
Q psy6603 162 VTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLY 241 (724)
Q Consensus 162 ~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 241 (724)
|. .+.+|..+|-++..+|+...|+..|+++++++|...+++.++|.+|...+.+++|+.+|.+++...|++..+
T Consensus 215 --p~----fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a 288 (966)
T KOG4626|consen 215 --PC----FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA 288 (966)
T ss_pred --Cc----eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh
Confidence 32 445556666666666666666666666666666666666666666666666666666666666666665555
Q ss_pred HHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhH
Q psy6603 242 YNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKC 320 (724)
Q Consensus 242 ~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (724)
+-+++.+ +.+|..+-|+..|+++++..|....
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~----------------------------------------------- 321 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPD----------------------------------------------- 321 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchH-----------------------------------------------
Confidence 5555554 3445555555554444444444311
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy6603 321 KIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYK 400 (724)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 400 (724)
++.++|.++...|+..+|..+|.+++...|+.+++..++|.++.
T Consensus 322 ------------------------------------Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 322 ------------------------------------AYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred ------------------------------------HHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 33345555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhc
Q psy6603 401 HAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLG 480 (724)
Q Consensus 401 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 480 (724)
.+|.+++|...|.++++..|.-......++.+|...|++++|+..|+.++.
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----------------------------- 416 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR----------------------------- 416 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-----------------------------
Confidence 555555555555555555555544444555555555555555444444433
Q ss_pred chhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHH
Q psy6603 481 RWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWH 560 (724)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 560 (724)
-.|..++++.++|.+|..+|+...|+.+|.+++..+|...+++.
T Consensus 417 ------------------------------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 417 ------------------------------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred ------------------------------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 33567779999999999999999999999999999999999999
Q ss_pred HHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHH
Q psy6603 561 VYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAME 617 (724)
Q Consensus 561 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 617 (724)
++|.+|...|+..+|+..|+.++++.|+.++++.+++.++.-..+|.+..+.+..+.
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~ 517 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLV 517 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988776666544
No 5
>KOG4626|consensus
Probab=100.00 E-value=4e-48 Score=361.77 Aligned_cols=469 Identities=14% Similarity=0.079 Sum_probs=410.3
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 106 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 106 (724)
.......++.-.++.|+|.+|.+....+-..+|.+......++.++++..+++.....-..+++.+|...+++.++|.++
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL 126 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 33457778888999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCC
Q psy6603 107 IQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD 186 (724)
Q Consensus 107 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 186 (724)
...|++++|+..|+.++++.|+..++|.++|.++...|+.+.|...|..+++.. |. ..-+...+|.++...|+
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln---P~----l~ca~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN---PD----LYCARSDLGNLLKAEGR 199 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---cc----hhhhhcchhHHHHhhcc
Confidence 999999999999999999999999999999999999999999998877765544 54 55677778889999999
Q ss_pred HHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhc-cCChHHHHHHHHHHH
Q psy6603 187 LEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQ-LTNNDDIFQLLTHYI 265 (724)
Q Consensus 187 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~ 265 (724)
..+|..+|.++++..|...-+|.++|.++..+|+.-.|+..|+++++++|+..+++.++|.+++ .+.++.|+..|.+++
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999999999988999999999999999999999999999999999999999998865 588888888888887
Q ss_pred HhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy6603 266 SKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDE 345 (724)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (724)
...|....
T Consensus 280 ~lrpn~A~------------------------------------------------------------------------ 287 (966)
T KOG4626|consen 280 NLRPNHAV------------------------------------------------------------------------ 287 (966)
T ss_pred hcCCcchh------------------------------------------------------------------------
Confidence 77776522
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhh
Q psy6603 346 GEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYI 425 (724)
Q Consensus 346 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 425 (724)
++-++|.+|..+|..+-|+..|+++++..|+.++++.++|..+...|+..+|..+|.+++.+.|+.+..
T Consensus 288 -----------a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada 356 (966)
T KOG4626|consen 288 -----------AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA 356 (966)
T ss_pred -----------hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH
Confidence 334777788888999999999999999999999999999999999999999999999999999988888
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHH
Q psy6603 426 NSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNG 505 (724)
Q Consensus 426 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A 505 (724)
...+|.++...|++++|..+|.+++.
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~------------------------------------------------------ 382 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALE------------------------------------------------------ 382 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHh------------------------------------------------------
Confidence 88888888888888888888777765
Q ss_pred HHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhh
Q psy6603 506 LKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW 585 (724)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 585 (724)
-+|..+.++.++|.+|.++|++++|+.+|+.++.+.|....++.++|..|..+|+.+.|+.+|.+|+.+
T Consensus 383 -----------v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 383 -----------VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred -----------hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 334556689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHHHHhCChhHHHHHHHHHH
Q psy6603 586 EHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ-CMWFQTECALAYQRLGRWGDTLKKCHEVD 652 (724)
Q Consensus 586 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 652 (724)
+|...+++.+||.+|-..|+...|+..|+..+++.|+. +++ ..++.|+.-..+|.+=-+.+.++.
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~--cNllh~lq~vcdw~D~d~~~~kl~ 517 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY--CNLLHCLQIVCDWTDYDKRMKKLV 517 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh--hHHHHHHHHHhcccchHHHHHHHH
Confidence 99999999999999999999999999999999999876 666 456667766666655444444443
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.7e-44 Score=402.90 Aligned_cols=614 Identities=11% Similarity=0.010 Sum_probs=478.0
Q ss_pred cccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHH----------------HH
Q psy6603 4 EHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCW----------------HV 67 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~----------------~~ 67 (724)
.+++++.|.+.+++++. .+|++++++..++.++...|+.++|.+.++++++.+|+++.++ ..
T Consensus 40 ~~~~~d~a~~~l~kl~~--~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 40 ATHREDLVRQSLYRLEL--IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hhCChHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 35789999999999999 7788999999999999999999999999999999999998764 45
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy6603 68 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQI-MRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDF 146 (724)
Q Consensus 68 lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 146 (724)
+|.++...|++++|+..|++++..+|.+... ...+..+....|++++|+..++++++.+|+++.++..+|.++...|++
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 5778999999999999999999999888652 223333334569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc-----------------C--------------CCCC-hhhHH---------------HHHHHHH
Q psy6603 147 DMACNILEAFRKTQQV-----------------T--------------NSYD-FEHSE---------------LLLYQSM 179 (724)
Q Consensus 147 ~~A~~~~~~~~~~~~~-----------------~--------------p~~~-~~~~~---------------~~~~~~~ 179 (724)
++|+..++++...... . |... ..... ....+|.
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 9999999886542110 0 1100 00000 0113478
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHH------------H--HHH
Q psy6603 180 VIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLY------------Y--NKL 245 (724)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------------~--~~l 245 (724)
++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++... + ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999976431 1 122
Q ss_pred HHH-hccCChHHHHHHHHHHHHhCCCCCccc-cccccccCchhHHHHHHHHHHhhhh-cCCchhhhhhHHhhhchhhHHH
Q psy6603 246 VEA-KQLTNNDDIFQLLTHYISKYPKATVPK-RLSLNYVSGDQFRTEIDKYLRHGFH-KGVPPLFVNLRSLYSNTEKCKI 322 (724)
Q Consensus 246 ~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (724)
+.. +..|++++|+..|++++...|...... .+...+...+++.++...|.+.... +..+..+..++.++... +
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~-~--- 433 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQ-S--- 433 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C---
Confidence 333 578999999999999999999875443 2344455567888888666554332 44555666677766432 2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q psy6603 323 IQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHA 402 (724)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 402 (724)
.++++..+.........- ............+..+|..+...|++++|+..|+++++.+|+++.+++.+|.++...
T Consensus 434 ~~~A~~~l~~l~~~~~~~-----~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 434 PEKALAFIASLSASQRRS-----IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHHHHHHHHhCCHHHHHH-----HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 222322222111000000 000000111224567899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCc-cCChhHHHHHHHHHHHHHHHHhhcc
Q psy6603 403 GDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSA-MENLNEMQCMWFQTECALAYQRLGR 481 (724)
Q Consensus 403 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~ 481 (724)
|++++|+..++++++.+|.++.....++.++...|+.++|+..++++....... ...+...........++..+...|+
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999999999999999998889999999999999999999875422110 0000000000111234555555555
Q ss_pred hhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHH
Q psy6603 482 WGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHV 561 (724)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 561 (724)
+++|+.. ++ ..|.++.++..+|.++.+.|++++|+..|+++++.+|+++.++..
T Consensus 589 ~~eA~~~--------------------l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~ 642 (1157)
T PRK11447 589 EAEAEAL--------------------LR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLG 642 (1157)
T ss_pred HHHHHHH--------------------HH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5555544 33 345667789999999999999999999999999999999999999
Q ss_pred HHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh-----hhhhhhhHHHHHH
Q psy6603 562 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ-----CMWFQTECALAYQ 636 (724)
Q Consensus 562 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~la~~~~ 636 (724)
+|.++...|++++|++.|+++++..|+++.++..++.++...|++++|.+.++.+....+.. .+.+...+|.++.
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988765433 2233356789999
Q ss_pred HhCChhHHHHHHHHHHHH
Q psy6603 637 RLGRWGDTLKKCHEVDRH 654 (724)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~ 654 (724)
..|++++|+..|++++..
T Consensus 723 ~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 723 QTGQPQQALETYKDAMVA 740 (1157)
T ss_pred HcCCHHHHHHHHHHHHhh
Confidence 999999999999999864
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.3e-41 Score=381.39 Aligned_cols=582 Identities=13% Similarity=0.068 Sum_probs=446.4
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHH-----
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIM----- 99 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~----- 99 (724)
+.....++..+.+....++.+.|.+.+.+++.++|+++.++..++.++...|+.++|.+.++++++.+|+++.+.
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~ 104 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTT 104 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 445677999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred -----------HHHHHHHHHhcchHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCC
Q psy6603 100 -----------RDLSLLQIQMRDLEGYRETRYQLFMLRPTQRAS-WIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYD 167 (724)
Q Consensus 100 -----------~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 167 (724)
..+|.++...|++++|+..|+++++.+|.+... ...+..+....|++++|+..++++.+.. |+
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~---P~-- 179 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY---PG-- 179 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC---CC--
Confidence 556778899999999999999999999887642 2223333445699999999999877765 44
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhH----------------------------------------
Q psy6603 168 FEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTV---------------------------------------- 207 (724)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---------------------------------------- 207 (724)
+..++..+|.++...|++++|+..+++++...+....+
T Consensus 180 --~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 180 --NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHH
Confidence 56788999999999999999999999886543211100
Q ss_pred --------------HHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCC
Q psy6603 208 --------------EETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKAT 272 (724)
Q Consensus 208 --------------~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~ 272 (724)
...+|.++...|++++|+..|+++++.+|+++.++..++.+ +..|++++|+..|+++++..|+..
T Consensus 258 L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~ 337 (1157)
T PRK11447 258 LAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS 337 (1157)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 01235666667777777777777777777777777777776 456777777777777777766542
Q ss_pred ccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchh
Q psy6603 273 VPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPAS 352 (724)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 352 (724)
... .....+ ..
T Consensus 338 ~~~----------------------------------------------~~~~ll-----------------------~~ 348 (1157)
T PRK11447 338 NRD----------------------------------------------KWESLL-----------------------KV 348 (1157)
T ss_pred chh----------------------------------------------HHHHHH-----------------------Hh
Confidence 210 000000 00
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHH
Q psy6603 353 ALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKY 432 (724)
Q Consensus 353 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 432 (724)
...|....+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|++.|+++++++|.+..+...++.+
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 11234456788889999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh--------------hHhhh
Q psy6603 433 MLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVD--------------RKCYE 498 (724)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--------------~~~~~ 498 (724)
+. .++.++|+..++.+....+.................+|.++...|++++|+..|++++ ..+..
T Consensus 429 ~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 429 YR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 75 4678999998877654322211111111111223447888899999999999988877 24556
Q ss_pred hhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHh------------------------------
Q psy6603 499 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRG------------------------------ 548 (724)
Q Consensus 499 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------------ 548 (724)
.|++++|+..++.+.. ..|.++++++.+|..+...|+.++|+..++++
T Consensus 508 ~G~~~~A~~~l~~al~--~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 508 AGQRSQADALMRRLAQ--QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred cCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 6899999999988554 23455566666666666666666666555432
Q ss_pred ----------hhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHh
Q psy6603 549 ----------LRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMEN 618 (724)
Q Consensus 549 ----------l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 618 (724)
++..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|++.++.+..
T Consensus 586 ~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 586 SGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 2247888889999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhhh-hhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhHHHHHhhhhHHHHHHHHhHHhhhcC
Q psy6603 619 LNEMQ-CMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEIIEDQFDFHTYCMRKMTLRSYVRLLRLEDVLRS 690 (724)
Q Consensus 619 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 690 (724)
..|.. ..+ ..+|.++...|++++|++.|++++...++..+...+ ....+ ...+.+...|++++|+..
T Consensus 666 ~~p~~~~~~--~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~--a~~~~-~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 666 TANDSLNTQ--RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMES--ALVLR-DAARFEAQTGQPQQALET 733 (1157)
T ss_pred cCCCChHHH--HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhh--HHHHH-HHHHHHHHcCCHHHHHHH
Confidence 77655 333 668899999999999999999999875433332111 11111 122447788888888643
No 8
>KOG2002|consensus
Probab=100.00 E-value=2.7e-42 Score=340.34 Aligned_cols=582 Identities=14% Similarity=0.108 Sum_probs=436.3
Q ss_pred hhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHhhcCCHHHHHHHHH
Q psy6603 8 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS-HVCWHVYGLLQRSDKKYDEAIKCYR 86 (724)
Q Consensus 8 ~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~ 86 (724)
++.|...|..+++ ++|++...++..|.+.+..|+|..|+.+|++++.++|.. +.....+|.|+..+|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~--~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLK--QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHh--hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 5899999999999 889999999999999999999999999999999999975 4557888999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q psy6603 87 NALKWEHDNIQIMRDLSLLQIQMRD---LEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVT 163 (724)
Q Consensus 87 ~a~~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 163 (724)
++++++|.++.++..||.+-....+ +..+...+.++...+|.+|.+...++.-++-.|+|..+..+...+.......
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999998876654 6788999999999999999999999999999999999999988877665333
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH-hhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHH
Q psy6603 164 NSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK-LTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYY 242 (724)
Q Consensus 164 p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 242 (724)
+ ..++.++.+|.++..+|++++|..+|.++++.+|++ .-.++.+|+.++..|+++.|+.+|+++++..|++.+..
T Consensus 304 ~----~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 304 S----IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred H----HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 3 477889999999999999999999999999999998 77899999999999999999999999999999999999
Q ss_pred HHHHHHhccC-----ChHHHHHHHHHHHHhCCCCCccccccccccCchhH-------HHHHHHHHHhhhhcCCchhhhhh
Q psy6603 243 NKLVEAKQLT-----NNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQF-------RTEIDKYLRHGFHKGVPPLFVNL 310 (724)
Q Consensus 243 ~~l~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l 310 (724)
..+|.++... ..+.|..+..+++...|.+.........+...++. ..++..+..... .-.|...+++
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~-~ip~E~LNNv 458 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGK-QIPPEVLNNV 458 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCC-CCCHHHHHhH
Confidence 9999996542 67889999999999998876543322222222222 222222222222 3456677788
Q ss_pred HHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHH
Q psy6603 311 RSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIE 390 (724)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 390 (724)
+.+....+. +..+...+.+++.........+ +..+..+...|++|.++...++++.|.+.|..+++.+|...+
T Consensus 459 aslhf~~g~---~~~A~~~f~~A~~~~~~~~n~d----e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId 531 (1018)
T KOG2002|consen 459 ASLHFRLGN---IEKALEHFKSALGKLLEVANKD----EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYID 531 (1018)
T ss_pred HHHHHHhcC---hHHHHHHHHHHhhhhhhhcCcc----ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHH
Confidence 888877776 5566666666665522111111 112233556889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHH
Q psy6603 391 LFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQT 470 (724)
Q Consensus 391 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (724)
++..+|.+....++..+|...++.++..+..++.++..+|.+++....+..|.+-|..++........ .+...
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D-------~Ysli 604 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD-------AYSLI 604 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc-------hhHHH
Confidence 99999988888999999999999999999999999999999999999999999988777764322211 12223
Q ss_pred HHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhh
Q psy6603 471 ECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR 550 (724)
Q Consensus 471 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 550 (724)
.+|.++...-..... +| ....+.+++|++.|.++|+
T Consensus 605 aLGN~~~~~l~~~~r--------------------------------n~------------ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 605 ALGNVYIQALHNPSR--------------------------------NP------------EKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred HhhHHHHHHhccccc--------------------------------Ch------------HHHHHHHHHHHHHHHHHHh
Confidence 345544332111100 00 1223445556666666666
Q ss_pred cCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhh-hhhhhhhhh
Q psy6603 551 NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLN-EMQCMWFQT 629 (724)
Q Consensus 551 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 629 (724)
.+|.|..+-+.+|.++...|++.+|+.+|.++.+...+++++|.++|+||..+|+|..|+++|+...+.. +.+..-+..
T Consensus 641 ~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 641 NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 6666666666666666666666666666666655555555566666666666666666666665543322 333333335
Q ss_pred hHHHHHHHhCChhHHHHHHHHHHHH
Q psy6603 630 ECALAYQRLGRWGDTLKKCHEVDRH 654 (724)
Q Consensus 630 ~la~~~~~~g~~~~A~~~~~~~~~~ 654 (724)
.||+++...|.+.+|.+....++..
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 5566666666666666655555544
No 9
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=100.00 E-value=3.8e-42 Score=338.17 Aligned_cols=392 Identities=55% Similarity=0.927 Sum_probs=362.3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy6603 169 EHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA 248 (724)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 248 (724)
++++++++.+.++...|++++|++.+++.....++...+....|.++.++|++++|...|..+++.+|++..++..+..+
T Consensus 2 E~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 2 EHSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEA 81 (517)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 36788999999999999999999999999988899999999999999999999999999999999999999999999988
Q ss_pred h----cc--CChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHH
Q psy6603 249 K----QL--TNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKI 322 (724)
Q Consensus 249 ~----~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (724)
+ .. ...+....+|++....+|.+..++++++.+..++.|...+..|+...+.+|+|+++..+..+|.+..+...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 6 21 35688899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q psy6603 323 IQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHA 402 (724)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 402 (724)
+..++..|...+...+.+........+++...+|+++.++++|...|++++|+.+++++|+..|+.++.++..|.++...
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence 99999999999998888777666677889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcch
Q psy6603 403 GDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRW 482 (724)
Q Consensus 403 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 482 (724)
|++.+|..+++.+..+|+.|.+++...+..+++.|++++|.+.+....+.+.++...+.+++++|+..
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~------------ 309 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET------------ 309 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH------------
Confidence 99999999999999999999999999999999999999999999888876666666666676666653
Q ss_pred hhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHH
Q psy6603 483 GDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVY 562 (724)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 562 (724)
T Consensus 310 -------------------------------------------------------------------------------- 309 (517)
T PF12569_consen 310 -------------------------------------------------------------------------------- 309 (517)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChh
Q psy6603 563 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWG 642 (724)
Q Consensus 563 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 642 (724)
..|.+|.+.|++.
T Consensus 310 -------------------------------------------------------------------e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 310 -------------------------------------------------------------------ECAEAYLRQGDYG 322 (517)
T ss_pred -------------------------------------------------------------------HHHHHHHHHhhHH
Confidence 3344667777888
Q ss_pred HHHHHHHHHHHHHhhhhcccchhHHHHHhhhhHHHHHHHHhHHhhhcCChHHHHHHHHHHHHHHHhhcCCCCCCchh
Q psy6603 643 DTLKKCHEVDRHFSEIIEDQFDFHTYCMRKMTLRSYVRLLRLEDVLRSHPFYYTAARCAIQVYLRLHDRPCTLDSEQ 719 (724)
Q Consensus 643 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 719 (724)
.|++.|..+.++|.++..|++||+.||+|++++|+|..+.+|+|.+++||+|.+|++.+++||+.++|.|......+
T Consensus 323 ~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~ 399 (517)
T PF12569_consen 323 LALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEE 399 (517)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998765443
No 10
>KOG2002|consensus
Probab=100.00 E-value=2.2e-38 Score=312.91 Aligned_cols=576 Identities=13% Similarity=0.108 Sum_probs=456.8
Q ss_pred hhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCC--HHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHH
Q psy6603 9 KNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGR--KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYR 86 (724)
Q Consensus 9 ~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 86 (724)
..|..+|+.+-+ ........+...+.-+...|. .+.|...|..+++..|++..++...|.+.+..|+|..|+.+|+
T Consensus 111 ~~at~~~~~A~k--i~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk 188 (1018)
T KOG2002|consen 111 DKATLLFDLADK--IDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYK 188 (1018)
T ss_pred HHHHHHhhHHHH--hhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHH
Confidence 445555555433 122222344445555555554 4999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCc-HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhcc
Q psy6603 87 NALKWEHDN-IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDF---DMACNILEAFRKTQQV 162 (724)
Q Consensus 87 ~a~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~ 162 (724)
+++.++|.. ++....+|.|+.++|+.+.|+..|.++++++|.++.++..||.+-....+. ..++..+.++-. .
T Consensus 189 ~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~---~ 265 (1018)
T KOG2002|consen 189 KALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYK---E 265 (1018)
T ss_pred HHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh---h
Confidence 999999986 557888999999999999999999999999999999999999888776654 455555555444 4
Q ss_pred CCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc---HhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCc-
Q psy6603 163 TNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHD---KLTVEETYGALKLKLGQYNEAMKHYESLIERNQEN- 238 (724)
Q Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~- 238 (724)
+|. ++.++..++.-++..|+|..+..+...++..... -...++.+|.++..+|++++|..+|.++++.+|++
T Consensus 266 n~~----nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~ 341 (1018)
T KOG2002|consen 266 NNE----NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF 341 (1018)
T ss_pred cCC----CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc
Confidence 443 5669999999999999999999999999876533 35579999999999999999999999999999998
Q ss_pred HHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhch
Q psy6603 239 TLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNT 317 (724)
Q Consensus 239 ~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (724)
.-.+.++|.. +..|+++.+...|+++....|+...
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e-------------------------------------------- 377 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE-------------------------------------------- 377 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH--------------------------------------------
Confidence 6778889988 6789999999999999999888632
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCChHHHHH
Q psy6603 318 EKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLG----DTMKALNYINAAIDHTPTLIELFV 393 (724)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~ 393 (724)
+...||.+|...+ ..+.|..++.++++..|.+.++|.
T Consensus 378 ---------------------------------------tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 378 ---------------------------------------TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred ---------------------------------------HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 2224455554443 568899999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHcc-----CccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcc-cCccCChhHHHHHH
Q psy6603 394 TKGRIYKHAGDVLEAYKWLDEAQSL-----DTADRYINSKCAKYMLRANLIKEAEETCSKFTREG-VSAMENLNEMQCMW 467 (724)
Q Consensus 394 ~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 467 (724)
.++.++... +...++..|.+|+.+ .+-.+.+...+|..++..|++++|...|..+.... +....+......+.
T Consensus 419 ~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 419 ELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLT 497 (1018)
T ss_pred HHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhH
Confidence 999998765 445559999988854 33346788899999999999999999999998751 11111111111244
Q ss_pred HHHHHHHHHHhhcchhhhhhhhhhhhh-----------H-hhh--hhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhh
Q psy6603 468 FQTECALAYQRLGRWGDTLKKCHEVDR-----------K-CYE--HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLN 533 (724)
Q Consensus 468 ~~~~~~~~~~~~g~~~~A~~~~~~~~~-----------~-~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (724)
..++++.++..+++++.|.+.|..++. . |.. .++..+|...++.+.. .+..++.++..+|.++.
T Consensus 498 ~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 498 LKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHL 575 (1018)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHH
Confidence 567799999999999999999998882 1 222 2677888888887555 33456679999999999
Q ss_pred hcCChHHHHHHHHHhhhcCC--CccchHHHHHHHHhc------------cccHHHHHHHHHHHhhhccccHHHHHHHHHH
Q psy6603 534 CLGRKEEAYEYVRRGLRNDL--KSHVCWHVYGLLQRS------------DKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 599 (724)
Q Consensus 534 ~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 599 (724)
...++..|.+-|+..++.-. +++.+...||.++.. .+.+++|+..|.++|..+|.|..+-..+|.+
T Consensus 576 ~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiV 655 (1018)
T KOG2002|consen 576 KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIV 655 (1018)
T ss_pred hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhh
Confidence 99999999998887776533 345577778887764 4678999999999999999999999999999
Q ss_pred HHHhhhHhhHHHHHHHHHhhhh-hhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhHHHHHhhhhHHHH
Q psy6603 600 QIQMRDLEGYREGVSAMENLNE-MQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEIIEDQFDFHTYCMRKMTLRSY 678 (724)
Q Consensus 600 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 678 (724)
+...|++..|+.+|.++..... ..+.| ..+|.||..+|+|..|++.|+.++++|. ..+......++.| ++
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~~~dv~--lNlah~~~e~~qy~~AIqmYe~~lkkf~--~~~~~~vl~~Lar-----a~ 726 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSDFEDVW--LNLAHCYVEQGQYRLAIQMYENCLKKFY--KKNRSEVLHYLAR-----AW 726 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhhCCcee--eeHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHHHHHH-----HH
Confidence 9999999999999999988776 66999 5599999999999999999999999876 3333344444444 47
Q ss_pred HHHHhHHhhh
Q psy6603 679 VRLLRLEDVL 688 (724)
Q Consensus 679 ~~~~~~~~~~ 688 (724)
+.-+.|.++.
T Consensus 727 y~~~~~~eak 736 (1018)
T KOG2002|consen 727 YEAGKLQEAK 736 (1018)
T ss_pred HHhhhHHHHH
Confidence 7777777765
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=5.6e-38 Score=334.08 Aligned_cols=566 Identities=9% Similarity=-0.006 Sum_probs=363.7
Q ss_pred cccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHH
Q psy6603 4 EHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIK 83 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 83 (724)
..|++++|+..|+++++ .+|+++.+++.++.++...|++++|+..++++++.+|++...+..++.+ +++.+|+.
T Consensus 56 ~~Gd~~~A~~~l~~Al~--~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQ--QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHH
Confidence 35899999999999999 7778888999999999999999999999999999999888887777666 88889999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHH--------HHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6603 84 CYRNALKWEHDNIQIMRDLSLL--------QIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEA 155 (724)
Q Consensus 84 ~~~~a~~~~p~~~~~~~~la~~--------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 155 (724)
.|++++..+|++.+++..++.. |.+.++..+++. .+.+..+|........+..+|..+|+|++|+..+.+
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999999999999999888887 666655555555 344444444555666668999999999999988888
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy6603 156 FRKTQQVTNSYDFEHSELLLYQSMVIQD-SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIER 234 (724)
Q Consensus 156 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (724)
+.+..+. .......++.+|.. .++ +++..+++..++ .++.++..++..+...|+.++|...+++.-..
T Consensus 208 L~k~~pl-------~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 208 ARQQNTL-------SAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHhcCCC-------CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 7776532 34567777778887 466 777777664333 67788888999999999999998887775444
Q ss_pred ---cCCcHHHHHHHHHHhcc------------------------------CChHHHHHHHHHHHHhCCCCCccccccccc
Q psy6603 235 ---NQENTLYYNKLVEAKQL------------------------------TNNDDIFQLLTHYISKYPKATVPKRLSLNY 281 (724)
Q Consensus 235 ---~p~~~~~~~~l~~~~~~------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 281 (724)
.|.+....+.++..... +.++.+ ++++...|.... .......
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~r~~~ 351 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA----QKLLATLPANEM-LEERYAV 351 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH----HHHhcCCCcchH-HHHHHhh
Confidence 35555555555544211 111111 122223333322 1111111
Q ss_pred c-CchhHHHHHHHHHHhhhh-cCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHH
Q psy6603 282 V-SGDQFRTEIDKYLRHGFH-KGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYH 359 (724)
Q Consensus 282 ~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (724)
. ..+...++...+...... ++.+.....+..+....++.+ ++-..+..+....+ ....+.. +..
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~---~a~~~~~~~~~~~~--------~~~~~~~---l~~ 417 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSR---EAADLLLQRYPFQG--------DARLSQT---LMA 417 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHH---HHHHHHHHhcCCCc--------ccccCHH---HHH
Confidence 1 123333333333322222 445555555555544444432 33333333332100 0000000 111
Q ss_pred HHHHHHHhc-------------------------CCH---HHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCHHHHH
Q psy6603 360 YLAQHYDHL-------------------------GDT---MKALNYINAAIDHTPT--LIELFVTKGRIYKHAGDVLEAY 409 (724)
Q Consensus 360 ~la~~~~~~-------------------------~~~---~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~ 409 (724)
.++.+|... |++ ..+...+.+++...|. ++.+++.+|.++.. +++.+|+
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 344444333 223 3345556666777787 89999999999987 8999999
Q ss_pred HHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhh
Q psy6603 410 KWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKC 489 (724)
Q Consensus 410 ~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 489 (724)
..+.+++...|++. ....++..+...|++++|+..++++....+... .+ ..+|.++...|++++|+..+
T Consensus 497 ~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~--------a~--~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 497 YAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNE--------DL--LAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred HHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH--------HH--HHHHHHHHHCCCHHHHHHHH
Confidence 99999999999754 355677777899999999999999876433321 12 33688888899998888887
Q ss_pred hhhhh--------------HhhhhhchHHHHHHHHH-HhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCC
Q psy6603 490 HEVDR--------------KCYEHKQYKNGLKFAKQ-ILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK 554 (724)
Q Consensus 490 ~~~~~--------------~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 554 (724)
.++.. .....|++++|+..++. +...| . +.++.++|.++.+.|++++|+..|++++.++|+
T Consensus 566 ~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P---~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd 641 (987)
T PRK09782 566 QQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP---S-ANAYVARATIYRQRHNVPAAVSDLRAALELEPN 641 (987)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 76541 11112566666666655 33332 2 445666666666666666666666666666666
Q ss_pred ccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh
Q psy6603 555 SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ 623 (724)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 623 (724)
++.++.++|.++...|++++|+..|+++++.+|+++.++.++|.++...|+++.|...++.+....|..
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 666666666666666666666666666666666666666666666666666666666666666555543
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=316.19 Aligned_cols=581 Identities=11% Similarity=-0.008 Sum_probs=401.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy6603 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 107 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 107 (724)
...++..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|+|...+..++.+
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-- 121 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-- 121 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh--
Confidence 356778888888899999999999999999999999999999999999999999999999999999999988888776
Q ss_pred HhcchHHHHHHHHHHHHhCCCchhHHHHHHHH--------HHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q psy6603 108 QMRDLEGYRETRYQLFMLRPTQRASWIGFAMA--------YHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM 179 (724)
Q Consensus 108 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~--------~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 179 (724)
+++++|+..|+++++.+|++..++..++.. |.+. ++|.+.++ .+.....|. .....+.+..
T Consensus 122 --~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~--lr~~~~~~~----~~vL~L~~~r 190 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN--DATFAASPE----GKTLRTDLLQ 190 (987)
T ss_pred --ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH--HhhhCCCCC----cHHHHHHHHH
Confidence 999999999999999999999999999998 5555 55555554 444433332 3345666699
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHH-cCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHH
Q psy6603 180 VIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLK-LGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDI 257 (724)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a 257 (724)
+|..+|++++|+..+.++++..|.+......++.+|.. +++ +++..+++..++ +++.++..++.. ...|+.++|
T Consensus 191 lY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 191 RAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999998 577 888888665333 677888888887 678999999
Q ss_pred HHHHHHHHHhCCCCCccccccccccCchhH-HHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhh
Q psy6603 258 FQLLTHYISKYPKATVPKRLSLNYVSGDQF-RTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSK 336 (724)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 336 (724)
...+++.....+..+........+...+.. ..+...+.+ .+..........+...+...+... +.+ .+.
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~- 336 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV-QFADNRQYVVGATLPVLLKEGQYD----AAQ----KLL- 336 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh-hhHHHHHHHHHHHHHHHHhccHHH----HHH----HHh-
Confidence 999998776666543321111110000000 000000000 000000111111122222222211 111 111
Q ss_pred cCCCCCCCCCCCCchhHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6603 337 TGHFSLQDEGEVEPASALLWVYHYLAQ-HYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA 415 (724)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 415 (724)
...|..... .+.. .....+.+.+|...........|.+...+..++......|++++|...|+.+
T Consensus 337 ----------~~~~~~~~~----~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~ 402 (987)
T PRK09782 337 ----------ATLPANEML----EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQR 402 (987)
T ss_pred ----------cCCCcchHH----HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 111111110 1111 1224588888999999999999999999999999999999999999999999
Q ss_pred HccCccc---hhhhhhHHHHHHHcCC-------------------------HHH---HHHHHHHhhhcccC--ccCChh-
Q psy6603 416 QSLDTAD---RYINSKCAKYMLRANL-------------------------IKE---AEETCSKFTREGVS--AMENLN- 461 (724)
Q Consensus 416 ~~~~~~~---~~~~~~~~~~~~~~g~-------------------------~~~---A~~~~~~~~~~~~~--~~~~~~- 461 (724)
....++. ..+...++.++.+.+. ..+ +...+.+++...|. ......
T Consensus 403 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~ 482 (987)
T PRK09782 403 YPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNR 482 (987)
T ss_pred cCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHH
Confidence 9973322 2233356666665544 222 22233333333222 100000
Q ss_pred -----------H-H----------HHHHHHHHHHHHHHhhcchhhhhhhhhhhhh-------------HhhhhhchHHHH
Q psy6603 462 -----------E-M----------QCMWFQTECALAYQRLGRWGDTLKKCHEVDR-------------KCYEHKQYKNGL 506 (724)
Q Consensus 462 -----------~-~----------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~~~A~ 506 (724)
. + ...|....+|.++...|++++|+..|+++.. .+...|++++|+
T Consensus 483 LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~ 562 (987)
T PRK09782 483 LAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARD 562 (987)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHH
Confidence 0 0 0012333345555677777777777765542 234457777777
Q ss_pred HHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhc
Q psy6603 507 KFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE 586 (724)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 586 (724)
..++.... ..|.....+..++......|++++|+..|+++++.+|+ +.++..+|.++.+.|++++|+..|++++.++
T Consensus 563 ~~l~qAL~--l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 563 RWLQQAEQ--RGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHHHHHHh--cCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77766443 22444445555555666668888888888888888885 7788888888888888888888888888888
Q ss_pred cccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHHHHhCChhHHHHHHHHHHHH
Q psy6603 587 HDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ-CMWFQTECALAYQRLGRWGDTLKKCHEVDRH 654 (724)
Q Consensus 587 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 654 (724)
|+++.++.++|.++...|++++|++.++.+.+..|.. ..+ ..+|.++...|++++|+..|+++++.
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~--~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALI--RQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888877765 444 56788888888888888888888866
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=3.7e-36 Score=317.08 Aligned_cols=260 Identities=13% Similarity=0.128 Sum_probs=163.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCC
Q psy6603 359 HYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANL 438 (724)
Q Consensus 359 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~ 438 (724)
..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34555555556666666666666666665555555666666666666666666666665555555555555666666666
Q ss_pred HHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCC
Q psy6603 439 IKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKY 518 (724)
Q Consensus 439 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 518 (724)
+++|+..|++++..+|... +....+|.++..+|++++|+..|.++ +. .+
T Consensus 415 ~~~A~~~~~kal~l~P~~~---------~~~~~la~~~~~~g~~~eA~~~~~~a-------------------l~---~~ 463 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFI---------FSHIQLGVTQYKEGSIASSMATFRRC-------------------KK---NF 463 (615)
T ss_pred HHHHHHHHHHHHHcCccCH---------HHHHHHHHHHHHCCCHHHHHHHHHHH-------------------HH---hC
Confidence 6666666666555444321 11223455555555555554443322 22 33
Q ss_pred CchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchH------HHHH-HHHhccccHHHHHHHHHHHhhhccccHH
Q psy6603 519 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCW------HVYG-LLQRSDKKYDEAIKCYRNALKWEHDNIQ 591 (724)
Q Consensus 519 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~l~-~~~~~~~~~~~A~~~~~~al~~~p~~~~ 591 (724)
|.++.++..+|.++...|++++|+..|++++.++|.+...+ ...+ .++...|++++|+..+++++.++|++..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 55667888889999999999999999999998888754422 2222 3334468899999999999999998888
Q ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q psy6603 592 IMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEI 658 (724)
Q Consensus 592 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 658 (724)
++..+|.++...|++++|++.++.+....+..... .....+.+|.....++.+.||.+
T Consensus 544 a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~---------~~a~~~~~a~~~~~~~~~~~~~~ 601 (615)
T TIGR00990 544 AVATMAQLLLQQGDVDEALKLFERAAELARTEGEL---------VQAISYAEATRTQIQVQEDYPVL 601 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH---------HHHHHHHHHHHHHHHHHHHhHHH
Confidence 88888888888888888888888877665432111 12223456666666666665543
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.2e-35 Score=313.24 Aligned_cols=415 Identities=13% Similarity=0.056 Sum_probs=298.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy6603 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 107 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 107 (724)
+..+..+|..++..|++++|+..|++++...|+ +..+..+|.++..+|++++|+..+.++++++|++..+++.+|.++.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456778999999999999999999999999996 6789999999999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCC----------------------
Q psy6603 108 QMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNS---------------------- 165 (724)
Q Consensus 108 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~---------------------- 165 (724)
.+|++++|+..|..+...++.+......+...... ..+........ ...|.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEIL---ETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHH---hcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 99999999999887777765443322211111111 11111111111 11111
Q ss_pred -------CChhhHHHHHHHHHHH---HHcCCHHHHHHHHHHHhhh---hccHhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6603 166 -------YDFEHSELLLYQSMVI---QDSGDLEEAVKHLDRFKEQ---IHDKLTVEETYGALKLKLGQYNEAMKHYESLI 232 (724)
Q Consensus 166 -------~~~~~~~~~~~~~~~~---~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 232 (724)
..+.....+..++... ...+.+++|++.|++++.. .|....++..+|.++...|++++|+..|++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0011112222333222 2236777888888887765 36666777778888888888888888888888
Q ss_pred HHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhH
Q psy6603 233 ERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLR 311 (724)
Q Consensus 233 ~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 311 (724)
+.+|++...+..++.+ ...|++++|+..|++++...|+...
T Consensus 359 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-------------------------------------- 400 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD-------------------------------------- 400 (615)
T ss_pred HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--------------------------------------
Confidence 8888777777777776 4567777777777777666555411
Q ss_pred HhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHH
Q psy6603 312 SLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIEL 391 (724)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 391 (724)
+++.+|.++...|++++|+.+|++++..+|++..+
T Consensus 401 ---------------------------------------------~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 401 ---------------------------------------------IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred ---------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 34466777777788888888888888877877777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHH
Q psy6603 392 FVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTE 471 (724)
Q Consensus 392 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (724)
+..+|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++...|......
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~----------- 504 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY----------- 504 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc-----------
Confidence 777788887788888888888887777777777777777777777777777777777776544321100
Q ss_pred HHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhh-hHhhhcCChHHHHHHHHHhhh
Q psy6603 472 CALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKG-LTLNCLGRKEEAYEYVRRGLR 550 (724)
Q Consensus 472 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~ 550 (724)
.+...+...+ ..+...|++++|+..++++++
T Consensus 505 ------------------------------------------------~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 505 ------------------------------------------------MNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred ------------------------------------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 0001122222 233446999999999999999
Q ss_pred cCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHH
Q psy6603 551 NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQI 592 (724)
Q Consensus 551 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 592 (724)
++|++..++..+|.++...|++++|+.+|++++++.+...+.
T Consensus 537 l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 537 IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999999999999999999998876553
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=1.1e-31 Score=287.83 Aligned_cols=180 Identities=13% Similarity=0.048 Sum_probs=159.6
Q ss_pred HHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q psy6603 12 LKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW 91 (724)
Q Consensus 12 ~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~ 91 (724)
+..+++ -. ..|.++....-...+....|+.++|+..+.++...+|....++..+|.++...|++++|+..|+++++.
T Consensus 2 ~~~~~~-~~--~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-AL--KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hh--ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455556 33 455666677777888889999999999999999888998889999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhH
Q psy6603 92 EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHS 171 (724)
Q Consensus 92 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 171 (724)
+|.++.++..++.++...|++++|+..++++++..|+++. +..+|.++...|++++|+..++++.+.. |+ +.
T Consensus 79 ~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~---P~----~~ 150 (765)
T PRK10049 79 EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA---PQ----TQ 150 (765)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC----CH
Confidence 9999999999999999999999999999999999999999 9999999999999999999999887765 43 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q psy6603 172 ELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHD 203 (724)
Q Consensus 172 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 203 (724)
.++..++.++...|..++|+..++++.. .|+
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~ 181 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDANL-TPA 181 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH
Confidence 6888889999999999999999998776 554
No 16
>KOG2076|consensus
Probab=100.00 E-value=5e-29 Score=245.52 Aligned_cols=574 Identities=14% Similarity=0.100 Sum_probs=387.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy6603 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 107 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 107 (724)
...+...|..++..|++++|..++.++++.+|.++.+|+.||.+|..+|+.+++...+-.|-.++|.+.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 56777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhH-HHHHHHHHHHHHcCC
Q psy6603 108 QMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHS-ELLLYQSMVIQDSGD 186 (724)
Q Consensus 108 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~g~ 186 (724)
++|++.+|.-+|.++++.+|.+.......+.+|.+.|+...|...+.++.... |..+.... ......+..+...++
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999998887766655 43233333 334445788888888
Q ss_pred HHHHHHHHHHHhhhh--ccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHH--cCCcHHHHHHHHHHhccCChHHHHHHHH
Q psy6603 187 LEEAVKHLDRFKEQI--HDKLTVEETYGALKLKLGQYNEAMKHYESLIER--NQENTLYYNKLVEAKQLTNNDDIFQLLT 262 (724)
Q Consensus 187 ~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~a~~~~~ 262 (724)
-+.|++.++.++... ....+.+..++.++.+..+++.|.......... .+++...-.. ..++. ..
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~~------~~ 364 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRRE------EP 364 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhccc------cc
Confidence 899999999998833 233456778999999999999998887766552 2222211000 00000 00
Q ss_pred HHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCC
Q psy6603 263 HYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSL 342 (724)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 342 (724)
..+-..|+.... .+ +-....++.+..+.. ...+++..+ +..
T Consensus 365 ~~~~~~~~~~s~-~l--------------------------~v~rl~icL~~L~~~---e~~e~ll~~---l~~------ 405 (895)
T KOG2076|consen 365 NALCEVGKELSY-DL--------------------------RVIRLMICLVHLKER---ELLEALLHF---LVE------ 405 (895)
T ss_pred cccccCCCCCCc-cc--------------------------hhHhHhhhhhccccc---chHHHHHHH---HHH------
Confidence 000000000000 00 000000000000000 011111111 111
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q psy6603 343 QDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPT-LIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA 421 (724)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 421 (724)
...++......++.++..+...|++.+|+.++..+....+. +...|..+|.||..+|.+++|+.+|++++.+.|.
T Consensus 406 ----~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~ 481 (895)
T KOG2076|consen 406 ----DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD 481 (895)
T ss_pred ----hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 22234444557889999999999999999999998887764 6779999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh--------
Q psy6603 422 DRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVD-------- 493 (724)
Q Consensus 422 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-------- 493 (724)
+..+...++.++.+.|+.++|.+.+..+...++...+.-.-....-+......++...|+.++=+.....++
T Consensus 482 ~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~ 561 (895)
T KOG2076|consen 482 NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRY 561 (895)
T ss_pred chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998775443221111111111122334555555555554333222222
Q ss_pred ------------------------------------------------------------------------hHhhhhhc
Q psy6603 494 ------------------------------------------------------------------------RKCYEHKQ 501 (724)
Q Consensus 494 ------------------------------------------------------------------------~~~~~~~~ 501 (724)
..+...+.
T Consensus 562 ~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r 641 (895)
T KOG2076|consen 562 IFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQR 641 (895)
T ss_pred hcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHh
Confidence 13344466
Q ss_pred hHHHHHHHHHHhcCCCCCchhH----HHHhhhhHhhhcCChHHHHHHHHHhhhc--------------------------
Q psy6603 502 YKNGLKFAKQILTNPKYAEHGE----TLAMKGLTLNCLGRKEEAYEYVRRGLRN-------------------------- 551 (724)
Q Consensus 502 ~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------- 551 (724)
+++|+.+.......+..-.+.+ .-+....+....+++..|.++++-++..
T Consensus 642 ~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~ 721 (895)
T KOG2076|consen 642 VQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQR 721 (895)
T ss_pred HHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6666666544322222111111 2222223444555666666555554443
Q ss_pred -------------CCCc-cchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHh--hhH-----h---
Q psy6603 552 -------------DLKS-HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM--RDL-----E--- 607 (724)
Q Consensus 552 -------------~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--~~~-----~--- 607 (724)
+|++ +......|..+...+.+.-|+..|-++...+|++|-+-..+|..+..+ +.. .
T Consensus 722 v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~ 801 (895)
T KOG2076|consen 722 VCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIA 801 (895)
T ss_pred HHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3334 333444566666778999999999999999999997777766665544 322 1
Q ss_pred hHHHHHHHHHhhh---hhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhhhc
Q psy6603 608 GYREGVSAMENLN---EMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEIIE 660 (724)
Q Consensus 608 ~a~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 660 (724)
.....+.+..++. ..+.++ +.+|++|+..|=..-|+.+|+++++..+....
T Consensus 802 qG~afL~RY~~lR~~~~~QEa~--YNigRayh~~gl~~LA~~YYekvL~~~p~~~~ 855 (895)
T KOG2076|consen 802 QGFAFLKRYKELRRCEEKQEAF--YNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVT 855 (895)
T ss_pred HHHHHHHHHHHhhccHHHHHHH--HHHHHHHHHcccHHHHHHHHHHHhCCCccccc
Confidence 2222222233332 244677 66999999999999999999999988654433
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=3e-31 Score=277.90 Aligned_cols=346 Identities=12% Similarity=0.042 Sum_probs=286.2
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
++.+|++.+|+..++.++. ..|.+++++..+|.+....|++++|+..|++++..+|+++.++..+|.++...|++++|
T Consensus 52 ~~~~g~~~~A~~l~~~~l~--~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVL--TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred HHhcCCcchhHHHhHHHHH--hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 3567899999999999998 77888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQ 161 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 161 (724)
+..|++++.++|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..++.+++..+
T Consensus 130 i~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 130 ADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999988888888888776654 47888999999888877655432
Q ss_pred cCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHH----HHHHHHHHHHHcCC
Q psy6603 162 VTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNE----AMKHYESLIERNQE 237 (724)
Q Consensus 162 ~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~~~~~~p~ 237 (724)
.. .......++.++...|++++|+..+++++...|+++.++..+|.++...|++++ |+..|++++..+|+
T Consensus 209 ~~------~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 209 LE------RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred Cc------chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 11 122335567788889999999999999999999988899999999999999885 78899999999999
Q ss_pred cHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhc
Q psy6603 238 NTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSN 316 (724)
Q Consensus 238 ~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (724)
+..++..++.+ ...|++++|+..+++++...|+...
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~------------------------------------------- 319 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY------------------------------------------- 319 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------------------------------------------
Confidence 88888888888 5678899998888888887776521
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q psy6603 317 TEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKG 396 (724)
Q Consensus 317 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 396 (724)
++..+|.++...|++++|+..|++++...|+++..+..+|
T Consensus 320 ----------------------------------------a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 320 ----------------------------------------VRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred ----------------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3346788888889999999999999998998887777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhh
Q psy6603 397 RIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTR 451 (724)
Q Consensus 397 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 451 (724)
.++...|++++|+..|+++++.+|++.. ..+++|...+..++.
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~~~------------~~~~ea~~~~~~~~~ 402 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASHLP------------QSFEEGLLALDGQIS 402 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhhch------------hhHHHHHHHHHHHHH
Confidence 8889999999999999999998887641 334455555555554
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=2e-30 Score=278.03 Aligned_cols=440 Identities=8% Similarity=-0.059 Sum_probs=335.0
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC
Q psy6603 48 YEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRP 127 (724)
Q Consensus 48 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 127 (724)
+.+++. -...|-++........+....|+.++|+..+.++...+|....++..+|.++...|++++|+..++++++.+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445555 4556666766667778888899999999999999998999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhH
Q psy6603 128 TQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTV 207 (724)
Q Consensus 128 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 207 (724)
.++.++..++.++...|++++|+..++++.+.. |+ ... +..+|.++...|++++|+..++++++..|+++.+
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~---P~----~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~ 152 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA---PD----KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQY 152 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC----CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999999887765 44 556 8889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHH-----HHHHHHH-hc-----cCCh---HHHHHHHHHHHHhCCCCCc
Q psy6603 208 EETYGALKLKLGQYNEAMKHYESLIERNQENTLY-----YNKLVEA-KQ-----LTNN---DDIFQLLTHYISKYPKATV 273 (724)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~-~~-----~~~~---~~a~~~~~~~~~~~~~~~~ 273 (724)
+..++.++...|..++|+..++++.. .|+.... ......+ +. .+++ ++|+..++.++...|..+.
T Consensus 153 ~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 153 PTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 99999999999999999999987775 5542110 0111111 00 0112 3344444444333222211
Q ss_pred cccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhH
Q psy6603 274 PKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASA 353 (724)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 353 (724)
..+ .
T Consensus 232 --------------------------------------------------------------------------~~~--~ 235 (765)
T PRK10049 232 --------------------------------------------------------------------------ATA--D 235 (765)
T ss_pred --------------------------------------------------------------------------cch--H
Confidence 000 1
Q ss_pred HHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc----hhhhh
Q psy6603 354 LLWVYHY-LAQHYDHLGDTMKALNYINAAIDHTPTLI-ELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTAD----RYINS 427 (724)
Q Consensus 354 ~~~~~~~-la~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~ 427 (724)
...+... ++.+ ...|++++|+..|+++++..|..| .+...+|.++...|++++|+..|++++..+|.+ .....
T Consensus 236 ~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 236 YQRARIDRLGAL-LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHH-HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 1111112 3433 466999999999999998864322 234446999999999999999999999988766 23455
Q ss_pred hHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHH
Q psy6603 428 KCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLK 507 (724)
Q Consensus 428 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~ 507 (724)
.++..+...|++++|+..++++....|.......
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~---------------------------------------------- 348 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYG---------------------------------------------- 348 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecC----------------------------------------------
Confidence 6677888999999999999998876654321110
Q ss_pred HHHHHhcCCCCCc--hhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhh
Q psy6603 508 FAKQILTNPKYAE--HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW 585 (724)
Q Consensus 508 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 585 (724)
+. ...|+ ...++..+|.++...|++++|++.+++++...|.++.++..+|.++...|++++|++.+++++.+
T Consensus 349 ----~~--~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 349 ----SP--TSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred ----CC--CCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 00 02233 24567788888888888888888888888888888888888888888888888888888888888
Q ss_pred ccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhh
Q psy6603 586 EHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMW 626 (724)
Q Consensus 586 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 626 (724)
+|++..++..++.++...|+++.|...++.+....|.....
T Consensus 423 ~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 423 EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 88888888888888888888888888888877777766443
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=2.3e-30 Score=271.20 Aligned_cols=361 Identities=9% Similarity=0.070 Sum_probs=267.7
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 105 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 105 (724)
.+..-+...+..+.+.|++++|+..++.++...|+++.+++.+|.+....|++++|+..|++++..+|+++.++..+|.+
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 33445566777788889999999999999999999999999998888889999999999999999999999999999999
Q ss_pred HHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcC
Q psy6603 106 QIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSG 185 (724)
Q Consensus 106 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g 185 (724)
+...|++++|+..++++++.+|+++.++..++.++...|++++|+..+..+.... |+ ....+...+ .+...|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~----~~~a~~~~~-~l~~~g 191 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PP----RGDMIATCL-SFLNKS 191 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CC----CHHHHHHHH-HHHHcC
Confidence 9999999999999999999999988888888888888888888888877655544 32 223333333 467788
Q ss_pred CHHHHHHHHHHHhhhhc-cHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHH
Q psy6603 186 DLEEAVKHLDRFKEQIH-DKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHY 264 (724)
Q Consensus 186 ~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~ 264 (724)
++++|+..+++++...| ........++.++...|++++|+..|++++..+|+++.++.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~--------------------- 250 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR--------------------- 250 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH---------------------
Confidence 88888888888877765 33334455677788888888888888888877776655433
Q ss_pred HHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy6603 265 ISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQD 344 (724)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 344 (724)
T Consensus 251 -------------------------------------------------------------------------------- 250 (656)
T PRK15174 251 -------------------------------------------------------------------------------- 250 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc
Q psy6603 345 EGEVEPASALLWVYHYLAQHYDHLGDTMK----ALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDT 420 (724)
Q Consensus 345 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~----A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 420 (724)
.+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|
T Consensus 251 ---------------~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 251 ---------------SLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred ---------------HHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 44555555666664 67777777777777777777777777777777888777777777777
Q ss_pred cchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhh
Q psy6603 421 ADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHK 500 (724)
Q Consensus 421 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 500 (724)
+++.+...++.++...|++++|+..|++++...
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~----------------------------------------------- 348 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASDEFVQLAREK----------------------------------------------- 348 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------------------------
Confidence 777777777777777777777777776665422
Q ss_pred chHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHH
Q psy6603 501 QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYR 580 (724)
Q Consensus 501 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 580 (724)
|.++..+..+|.++...|++++|+..|+++++.+|++. ...|++|+..|.
T Consensus 349 ------------------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~ 398 (656)
T PRK15174 349 ------------------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALD 398 (656)
T ss_pred ------------------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHH
Confidence 22233445556677777777777777777777777664 234455666666
Q ss_pred HHhhhcc
Q psy6603 581 NALKWEH 587 (724)
Q Consensus 581 ~al~~~p 587 (724)
++++..+
T Consensus 399 ~~~~~~~ 405 (656)
T PRK15174 399 GQISAVN 405 (656)
T ss_pred HHHHhcC
Confidence 6665443
No 20
>KOG0547|consensus
Probab=100.00 E-value=2.9e-30 Score=235.95 Aligned_cols=430 Identities=14% Similarity=0.057 Sum_probs=271.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 108 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 108 (724)
..+-..|.-+++.|+|++|+++|..+|+..|+.+..|.+++-||...|+|++.++...++++++|+...+++..+..+..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 45566788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcchHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhccCCCCChhhHHHHHHHHHHHHHcC
Q psy6603 109 MRDLEGYRETRYQLFMLR-PTQRASWIGFAMAYHLLHDFDMACNILEAFRK--TQQVTNSYDFEHSELLLYQSMVIQDSG 185 (724)
Q Consensus 109 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~g 185 (724)
+|++.+|+....-..-.. -.+...-..+-+++-.+|. ...+.-.+ ..+.-|+ ......++ +.......
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-----~ka~e~~k~nr~p~lPS--~~fi~syf--~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-----KKAKEKLKENRPPVLPS--ATFIASYF--GSFHADPK 266 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-----HHHHHhhcccCCCCCCc--HHHHHHHH--hhcccccc
Confidence 888888876553221111 1111111111222222211 11111111 1111121 00111111 10000000
Q ss_pred CHHHHHHHHHHHhhhhccHhhHHHHHHHHHHH-cCChHHHHHHHHHHHHHc-------CCcH------HHHHHHHHH-hc
Q psy6603 186 DLEEAVKHLDRFKEQIHDKLTVEETYGALKLK-LGQYNEAMKHYESLIERN-------QENT------LYYNKLVEA-KQ 250 (724)
Q Consensus 186 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~-------p~~~------~~~~~l~~~-~~ 250 (724)
. .-....+..+...-..+-..+.. ...|.+|...+.+..... .-+. .++...|.+ +-
T Consensus 267 ---~-----~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 267 ---P-----LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred ---c-----cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 0 00000000011111111111111 124555555555544321 1111 122222222 23
Q ss_pred cCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHH
Q psy6603 251 LTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESY 330 (724)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (724)
.|+.-.|...|+.++..+|....
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~--------------------------------------------------------- 361 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS--------------------------------------------------------- 361 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch---------------------------------------------------------
Confidence 35555555555555555544321
Q ss_pred HHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHH
Q psy6603 331 VEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYK 410 (724)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 410 (724)
.|..++.+|....+.++-...|.++..++|+++++|+.+|.+++-++++++|+.
T Consensus 362 --------------------------lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 362 --------------------------LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred --------------------------HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 233566667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhh
Q psy6603 411 WLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCH 490 (724)
Q Consensus 411 ~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 490 (724)
.|++++.++|++.+.+..++....+.++++++...|+.+.+
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--------------------------------------- 456 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--------------------------------------- 456 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 77777777777777777777776666666666666665544
Q ss_pred hhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCC------ccchHHHHHH
Q psy6603 491 EVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK------SHVCWHVYGL 564 (724)
Q Consensus 491 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~ 564 (724)
++|..++++...|.++..++++++|++.|++++++.|. ++..+...|.
T Consensus 457 --------------------------kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 457 --------------------------KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred --------------------------hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 56677779999999999999999999999999999998 5554444443
Q ss_pred H-HhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh
Q psy6603 565 L-QRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ 623 (724)
Q Consensus 565 ~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 623 (724)
+ +.-.+++..|+..+++|++++|.+..++..||.+.+++|+.++|++.|+....+....
T Consensus 511 l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 511 LVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred hhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 3 3346899999999999999999999999999999999999999999999876665444
No 21
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.2e-29 Score=272.78 Aligned_cols=605 Identities=11% Similarity=0.013 Sum_probs=389.5
Q ss_pred ccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHhhcCCHHHH
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS-HVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A 81 (724)
...|++++|+..|+.+... ..+.+..++..+...+...+....|...+..+++..+.. ......+...|.+.|+.+.|
T Consensus 62 ~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A 140 (857)
T PLN03077 62 CSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHA 140 (857)
T ss_pred HhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHH
Confidence 4568899999999988773 234455666666667777788888888888887765542 33455666667778888888
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCC-------------------------------
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFML--RPT------------------------------- 128 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~------------------------------- 128 (724)
...|.++. +.+...|..+...+.+.|++++|+..|.++... .|+
T Consensus 141 ~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g 217 (857)
T PLN03077 141 WYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217 (857)
T ss_pred HHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC
Confidence 88887764 235567777888888888888888888777643 233
Q ss_pred ---chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh-ccH
Q psy6603 129 ---QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI-HDK 204 (724)
Q Consensus 129 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 204 (724)
+...+..+...|.+.|++++|..+|+.+.. | +...|..+...|.+.|++++|+..|.++.... ..+
T Consensus 218 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~-----d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----R-----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----C-----CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 223345555666666676666666655321 1 23456666666677777777777776665432 123
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCcccccccccc
Q psy6603 205 LTVEETYGALKLKLGQYNEAMKHYESLIERN-QENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYV 282 (724)
Q Consensus 205 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (724)
..++..+...+...|+.+.|.+.+..+.+.. +.+...+..+... .+.|++++|..+|+++.. |+......+...+.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~~s~n~li~~~~ 365 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET--KDAVSWTAMISGYE 365 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeeeHHHHHHHHH
Confidence 3445555556666666666666666665542 1233344444444 456777777777776542 22222222333445
Q ss_pred CchhHHHHHHHHHHhhhhcCCc--hhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHH
Q psy6603 283 SGDQFRTEIDKYLRHGFHKGVP--PLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHY 360 (724)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (724)
..+.+.+++..+.......-.| ..+..+...+...++ .+.+.+.+....+. ...+ + ..++..
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~---~~~a~~l~~~~~~~----------g~~~-~--~~~~n~ 429 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD---LDVGVKLHELAERK----------GLIS-Y--VVVANA 429 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch---HHHHHHHHHHHHHh----------CCCc-c--hHHHHH
Confidence 5566666654443332221112 223333333333333 44444444444432 1111 1 224556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHH
Q psy6603 361 LAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIK 440 (724)
Q Consensus 361 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~ 440 (724)
+...|.+.|++++|.++|+++.+ .+...|..+...+...|+.++|+..|+++...-+.|...+..+...+.+.|..+
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHH
Confidence 77777888888888888876543 245577777777888888888888888777553444555556666677777777
Q ss_pred HHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh----------hHhhhhhchHHHHHHHH
Q psy6603 441 EAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVD----------RKCYEHKQYKNGLKFAK 510 (724)
Q Consensus 441 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~~~A~~~~~ 510 (724)
.+.+++..+++.+........ ..+...|.+.|++++|...|..+. ..+...|+.++|+++|+
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~--------naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLP--------NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred HhHHHHHHHHHhCCCccceec--------hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777765433222211 236788888899998888776552 45556688899999998
Q ss_pred HHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCC--ccchHHHHHHHHhccccHHHHHHHHHHHhhhccc
Q psy6603 511 QILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK--SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 588 (724)
Q Consensus 511 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 588 (724)
.+... ....+..++..+...+.+.|+.++|.++|+.+.+..+- +...|..+..++.+.|++++|.+.++++ ...|+
T Consensus 579 ~M~~~-g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 579 RMVES-GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHc-CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 87654 23334557777778888899999999999988854333 3347788889999999999999998886 34454
Q ss_pred cHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHH
Q psy6603 589 NIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRH 654 (724)
Q Consensus 589 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 654 (724)
+.+|..|...+...|+.+.+....+.+.+..|....++ ..++.+|...|+|++|.++.+.+.+.
T Consensus 657 -~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y-~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 657 -PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY-ILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH-HHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 56777777777788888888888888888877763332 56778899999999999988877765
No 22
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-29 Score=275.44 Aligned_cols=564 Identities=11% Similarity=0.089 Sum_probs=410.6
Q ss_pred ccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHH
Q psy6603 5 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKC 84 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 84 (724)
.+.+..|...+..+++.... .+......+...|.+.|+.+.|...|++... .+...|..+...+.+.|++++|+..
T Consensus 99 ~~~~~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~ 174 (857)
T PLN03077 99 KRAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCL 174 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCCChHHHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHH
Confidence 35556666666666552111 2233444445555666666666666665532 2345566666666666666666666
Q ss_pred HHHHHhh--CCC----------------------------------cHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Q psy6603 85 YRNALKW--EHD----------------------------------NIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128 (724)
Q Consensus 85 ~~~a~~~--~p~----------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 128 (724)
|.++... .|+ +...+..+...|.+.|+++.|...|+++.. .
T Consensus 175 f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~ 251 (857)
T PLN03077 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---R 251 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---C
Confidence 6665432 232 344667888899999999999999987643 3
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh-ccHhhH
Q psy6603 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI-HDKLTV 207 (724)
Q Consensus 129 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 207 (724)
+...|..+...|.+.|++++|+.+|.++.+.. ..|+ ...+..+...+...|+.+.|.+.+..+.+.. +.+..+
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd-----~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMRELS-VDPD-----LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 55788899999999999999999998877643 3443 4456666777888899999999888887653 345778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhC--CCCCccccccccccCc
Q psy6603 208 EETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKY--PKATVPKRLSLNYVSG 284 (724)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 284 (724)
+..+...|.+.|++++|.+.|+++.. | +...|..+... .+.|++++|+.+|+++.... |+......+...+...
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~~--~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRMET--K-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 88888999999999999999888642 3 34455555555 56788999999999886653 5544433333344445
Q ss_pred hhHHHHHHHHHHhhhhcC---CchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHH
Q psy6603 285 DQFRTEIDKYLRHGFHKG---VPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYL 361 (724)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 361 (724)
+.+..+..-+ ......+ ...++..+...|...++.+.+.+. |.+.. .++.. ++..+
T Consensus 403 g~~~~a~~l~-~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v---f~~m~---------------~~d~v--s~~~m 461 (857)
T PLN03077 403 GDLDVGVKLH-ELAERKGLISYVVVANALIEMYSKCKCIDKALEV---FHNIP---------------EKDVI--SWTSI 461 (857)
T ss_pred chHHHHHHHH-HHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH---HHhCC---------------CCCee--eHHHH
Confidence 5555554332 2222322 344566677778777764444443 33221 11222 45578
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc-cchhhhhhHHHHHHHcCCHH
Q psy6603 362 AQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDT-ADRYINSKCAKYMLRANLIK 440 (724)
Q Consensus 362 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~g~~~ 440 (724)
...|...|+.++|+..|+++....+.+...+..+...+...|+.+.+.+.+..+++... .+..+...+...|.+.|+++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 88899999999999999999876555566777888888999999999999999988743 34666778899999999999
Q ss_pred HHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh---------------hHhhhhhchHHH
Q psy6603 441 EAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVD---------------RKCYEHKQYKNG 505 (724)
Q Consensus 441 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~~~A 505 (724)
+|...|+.. ..+. ..| ..+...|.+.|+.++|++.|+++. ..+...|.+++|
T Consensus 542 ~A~~~f~~~-~~d~----------~s~--n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 542 YAWNQFNSH-EKDV----------VSW--NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHHHHhc-CCCh----------hhH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 999999886 2111 122 337889999999999999999887 356667999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhh
Q psy6603 506 LKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW 585 (724)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 585 (724)
.++|+.+........+...|..+..++.+.|++++|.+.++++ ...|+ +.+|..+-..+...|+.+.|....++++++
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 9999998743344456679999999999999999999999987 34453 567888888889999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhh
Q psy6603 586 EHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLN 620 (724)
Q Consensus 586 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 620 (724)
+|+++..+..|+++|...|+|+++.+..+.|....
T Consensus 687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999998654
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.98 E-value=2.7e-27 Score=247.43 Aligned_cols=487 Identities=7% Similarity=-0.070 Sum_probs=362.0
Q ss_pred CCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy6603 21 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 100 (724)
Q Consensus 21 ~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 100 (724)
.+..|..+...+..+.+.++.|+++.|+..|+++++.+|+++.....+..++...|+.++|+..+++++...|.....+.
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 34677888999999999999999999999999999999998655448888888899999999999999944445555666
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q psy6603 101 DLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMV 180 (724)
Q Consensus 101 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 180 (724)
.+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++.... |. ... +..++.+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~----~~~-~l~layL 178 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD---PT----VQN-YMTLSYL 178 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cc----hHH-HHHHHHH
Confidence 668899999999999999999999999999999999999999999999988777754443 43 222 2444555
Q ss_pred HHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHH
Q psy6603 181 IQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQL 260 (724)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~ 260 (724)
+...++..+|++.++++++.+|++..++..+..++...|-...|.+...+--.........+..... +.+.
T Consensus 179 ~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~---------~a~~ 249 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDA---------AAEQ 249 (822)
T ss_pred HHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHH---------HHHH
Confidence 5557777779999999999999999998999999999998888876654422111111111111111 1100
Q ss_pred HHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCC
Q psy6603 261 LTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHF 340 (724)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 340 (724)
.+.+. .+. -...++...++.++..+...+...+..
T Consensus 250 vr~a~--~~~-------------------------------------------~~~~~r~~~~d~ala~~~~l~~~~~~~ 284 (822)
T PRK14574 250 VRMAV--LPT-------------------------------------------RSETERFDIADKALADYQNLLTRWGKD 284 (822)
T ss_pred Hhhcc--ccc-------------------------------------------ccchhhHHHHHHHHHHHHHHHhhccCC
Confidence 00000 000 001122234566666677666543211
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy6603 341 SLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHT-PTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLD 419 (724)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 419 (724)
++ .......+..-.-.++...|++.+++..|+.+.... |--+.+....|..|...+++++|+.+|++++.-.
T Consensus 285 p~-------~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 285 PE-------AQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred Cc-------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 11 111112233344455667899999999999877554 2234567778999999999999999999998865
Q ss_pred cc------chhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh
Q psy6603 420 TA------DRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVD 493 (724)
Q Consensus 420 ~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 493 (724)
|. +......+...++..+++++|..+++++.+..|...... |
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~------------~-------------------- 405 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY------------G-------------------- 405 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc------------C--------------------
Confidence 32 233346788889999999999999999887544211100 0
Q ss_pred hHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHH
Q psy6603 494 RKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYD 573 (724)
Q Consensus 494 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 573 (724)
......+|+..++...++.++...|++.+|++.+++.+...|.|+..+..+|.++...|.+.
T Consensus 406 ------------------~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~ 467 (822)
T PRK14574 406 ------------------LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPR 467 (822)
T ss_pred ------------------CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 00112567777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhh
Q psy6603 574 EAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMW 626 (724)
Q Consensus 574 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 626 (724)
+|...++.+..++|++..+...++.+.+.+++|..|......+....|.+...
T Consensus 468 ~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 468 KAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 99999999999999999999999999999999999999999988888877544
No 24
>KOG0547|consensus
Probab=99.98 E-value=1.2e-28 Score=225.39 Aligned_cols=414 Identities=15% Similarity=0.068 Sum_probs=269.5
Q ss_pred CcccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHH
Q psy6603 1 KCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 80 (724)
Q Consensus 1 k~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 80 (724)
++|.+|+|++||++|.+++. .+|+.+..+..++-||...|++++-++...++++++|+...+++..+..+...|++.+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 58999999999999999999 7777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC-CCcHHHHHHHHHHHHHhcch----------------HHHHHHHHHHHHhCCCc------hhHHHHHH
Q psy6603 81 AIKCYRNALKWE-HDNIQIMRDLSLLQIQMRDL----------------EGYRETRYQLFMLRPTQ------RASWIGFA 137 (724)
Q Consensus 81 A~~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~----------------~~A~~~~~~~l~~~p~~------~~~~~~la 137 (724)
|+....-..-.. -++..+.-.+-.++-.++.. ...+..|-..+..+|.. ..+.-.+.
T Consensus 202 al~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~ 281 (606)
T KOG0547|consen 202 ALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALA 281 (606)
T ss_pred HHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHH
Confidence 987765432221 12222211111121111110 01122222222222210 00111111
Q ss_pred HH--HHHc---CCHHHHHHHHHHHHHhhccCCCC------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhh
Q psy6603 138 MA--YHLL---HDFDMACNILEAFRKTQQVTNSY------DFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLT 206 (724)
Q Consensus 138 ~~--~~~~---g~~~~A~~~~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 206 (724)
.. .... ..|..|...+.+........+.. ......++...|..++-.|++-.|.+.|+.+++++|.+..
T Consensus 282 ~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~ 361 (606)
T KOG0547|consen 282 EALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS 361 (606)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch
Confidence 11 1111 24555555444433222222220 0122556666677777777777777777777777777777
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchh
Q psy6603 207 VEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQ 286 (724)
Q Consensus 207 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (724)
.+..++.+|....+.++-...|.++.+++|.++++++..|
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRg---------------------------------------- 401 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRG---------------------------------------- 401 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHH----------------------------------------
Confidence 7777777777777777777777777777776666555444
Q ss_pred HHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q psy6603 287 FRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYD 366 (724)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 366 (724)
++++
T Consensus 402 ----------------------------------------------------------------------------Qm~f 405 (606)
T KOG0547|consen 402 ----------------------------------------------------------------------------QMRF 405 (606)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 4444
Q ss_pred hcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHH
Q psy6603 367 HLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETC 446 (724)
Q Consensus 367 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 446 (724)
-.+++++|+.-|++++.++|++.-++..++.+.+++++++++...|+.+....|+.++++...+.++...+++++|++.|
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHH
Q psy6603 447 SKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLA 526 (724)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 526 (724)
+++++..|...... .++..+.
T Consensus 486 D~ai~LE~~~~~~~-----------------------------------------------------------v~~~plV 506 (606)
T KOG0547|consen 486 DKAIELEPREHLII-----------------------------------------------------------VNAAPLV 506 (606)
T ss_pred HHHHhhcccccccc-----------------------------------------------------------ccchhhh
Confidence 66665433311100 0000111
Q ss_pred hhhhHhh-hcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHH
Q psy6603 527 MKGLTLN-CLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 591 (724)
Q Consensus 527 ~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 591 (724)
..|.+.. -.+++..|+.++++++++||.+..++..||.+..++|+.++|+++|++++.+...-.+
T Consensus 507 ~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E 572 (606)
T KOG0547|consen 507 HKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESE 572 (606)
T ss_pred hhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Confidence 1121111 1388999999999999999999999999999999999999999999999887654443
No 25
>KOG0495|consensus
Probab=99.97 E-value=4.1e-26 Score=216.21 Aligned_cols=534 Identities=13% Similarity=0.121 Sum_probs=403.3
Q ss_pred cchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHH---------------
Q psy6603 6 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGL--------------- 70 (724)
Q Consensus 6 ~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~--------------- 70 (724)
++..+|..++..+.+ .+|.++..|..-|..-...|++..|..+..+..+..|.+.++|..-..
T Consensus 265 ~DikKaR~llKSvre--tnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Av 342 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRE--TNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAV 342 (913)
T ss_pred HHHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHH
Confidence 577889999999999 777888899999988888888888888887777666666655533111
Q ss_pred ---------------H---------------------------HhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy6603 71 ---------------L---------------------------QRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 108 (724)
Q Consensus 71 ---------------~---------------------------~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 108 (724)
+ .....+.+.|+..+.+|++..|.+.+.|..++.
T Consensus 343 r~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlar---- 418 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALAR---- 418 (913)
T ss_pred HhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH----
Confidence 1 011133444555666666666666665555544
Q ss_pred hcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCC----------------------
Q psy6603 109 MRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSY---------------------- 166 (724)
Q Consensus 109 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---------------------- 166 (724)
+.-|+.|...++++-+.-|.++..|..-+.+-...|+.+...+++.+.+..+..+...
T Consensus 419 LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~Tc 498 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITC 498 (913)
T ss_pred HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhH
Confidence 5678899999999999999999999999999999999888888777755444332210
Q ss_pred -------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6603 167 -------------DFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIE 233 (724)
Q Consensus 167 -------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 233 (724)
....-..|+.-+..+.+.+-++-|..+|..+++.+|....+|...+..-...|..++-...+++++.
T Consensus 499 QAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~ 578 (913)
T KOG0495|consen 499 QAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE 578 (913)
T ss_pred HHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1223345666677888888899999999999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCc-hhHHHHHHHHHHhhhhcCCchhhhhhH
Q psy6603 234 RNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSG-DQFRTEIDKYLRHGFHKGVPPLFVNLR 311 (724)
Q Consensus 234 ~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 311 (724)
..|.....|...+.. ...|+...|..++..+.+..|.+.......+.+... .+++.+-.-+.+.....+.+.++..-.
T Consensus 579 ~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~ 658 (913)
T KOG0495|consen 579 QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSA 658 (913)
T ss_pred hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHh
Confidence 999999999888887 456999999999999999999987765555554443 444444444444444466677776655
Q ss_pred HhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHH
Q psy6603 312 SLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIEL 391 (724)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 391 (724)
.+....+. .++++.-.+++++.++.|+. .+..+|+++.+.++.+.|...|...++..|+.+..
T Consensus 659 ~~er~ld~---~eeA~rllEe~lk~fp~f~K--------------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL 721 (913)
T KOG0495|consen 659 NLERYLDN---VEEALRLLEEALKSFPDFHK--------------LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL 721 (913)
T ss_pred HHHHHhhh---HHHHHHHHHHHHHhCCchHH--------------HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence 55544444 56666666778876654433 56689999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHH
Q psy6603 392 FVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTE 471 (724)
Q Consensus 392 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (724)
|..++.+-.+.|..-.|...++++.-.+|.+...+.....+-++.|+.+.|...+.++++..|.... .|..
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~-------LWaE-- 792 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL-------LWAE-- 792 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch-------hHHH--
Confidence 9999999999999999999999999999999999999999999999999999999999998887533 2211
Q ss_pred HHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc
Q psy6603 472 CALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN 551 (724)
Q Consensus 472 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 551 (724)
-....-+-++-..+++. +. +...++.++...|..+....++++|.+.|.++++.
T Consensus 793 aI~le~~~~rkTks~DA-----------------------Lk---kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDA-----------------------LK---KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHhccCcccchHHHHH-----------------------HH---hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 11111111221111111 11 22344557888888888888888888888888888
Q ss_pred CCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHH
Q psy6603 552 DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 597 (724)
Q Consensus 552 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 597 (724)
+|++.++|..+-..+...|.-++-.++|.++....|.+...|....
T Consensus 847 d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 847 DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 8888888888888888888888888888888888888877776654
No 26
>KOG2076|consensus
Probab=99.97 E-value=7.3e-26 Score=223.45 Aligned_cols=570 Identities=15% Similarity=0.091 Sum_probs=354.4
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
+|-.|++++|.+++..+++ ++|.++.+++.+|.+|..+|+.+++....-.|-.++|++.+.|..++....++|++.+|
T Consensus 149 lfarg~~eeA~~i~~EvIk--qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIK--QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3567999999999999999 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCch-----hHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQR-----ASWIGFAMAYHLLHDFDMACNILEAF 156 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~ 156 (724)
+-+|.+|++.+|.+....+..+.+|.++|+...|...|.+++...|... ......+..+...++-+.|++.++.+
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999311 12222344455555555555554442
Q ss_pred HHhhcc---------------------------------------------------------CCC-C------------
Q psy6603 157 RKTQQV---------------------------------------------------------TNS-Y------------ 166 (724)
Q Consensus 157 ~~~~~~---------------------------------------------------------~p~-~------------ 166 (724)
...... .|+ .
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 220000 000 0
Q ss_pred -----------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH-hhHHHHHHHHHHHcCChH
Q psy6603 167 -----------------------DFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK-LTVEETYGALKLKLGQYN 222 (724)
Q Consensus 167 -----------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~ 222 (724)
.....+.++.++..+...|++.+|+.+|..+....+.. ..+|..+|.||..+|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 12234455666777777777777777777766654432 456777777777777777
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhc
Q psy6603 223 EAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHK 301 (724)
Q Consensus 223 ~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (724)
+|+..|++++...|++.++...|+.+ .++|++++|.+.++.+. .|+......
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~--~~D~~~~e~------------------------- 519 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII--NPDGRNAEA------------------------- 519 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc--CCCccchhh-------------------------
Confidence 77777777777777777777777777 44577777777666655 222111000
Q ss_pred CCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy6603 302 GVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAA 381 (724)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 381 (724)
...++ ...+......++...|+.++=+......
T Consensus 520 ---------------------------------------------~a~~~--e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 520 ---------------------------------------------CAWEP--ERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred ---------------------------------------------ccccH--HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 00000 0001112222222222222211111111
Q ss_pred Hh-----------------------cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HccCccch-hhhhhH
Q psy6603 382 ID-----------------------HTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA--------QSLDTADR-YINSKC 429 (724)
Q Consensus 382 l~-----------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--------~~~~~~~~-~~~~~~ 429 (724)
+. ..+-.......+.....+.++........... -.+.-++. .+...+
T Consensus 553 v~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~ 632 (895)
T KOG2076|consen 553 VDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFREL 632 (895)
T ss_pred HHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHH
Confidence 10 01112222222222222222211111111100 01111122 344455
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhH-----------hhh
Q psy6603 430 AKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRK-----------CYE 498 (724)
Q Consensus 430 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----------~~~ 498 (724)
..++.+.+++++|+.+...++....-....... . -+.+-...+-...+++..|...++.+... ++.
T Consensus 633 i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~-k--~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n 709 (895)
T KOG2076|consen 633 ILSLAKLQRVQEALSVVFTALEAYIFFQDSEIR-K--ELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWN 709 (895)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHH-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 666777777777777777666532111110000 0 00111223344455666665555554421 111
Q ss_pred --------hhchHHHHHHHHHHhcCCCCCch-hHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhc-
Q psy6603 499 --------HKQYKNGLKFAKQILTNPKYAEH-GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS- 568 (724)
Q Consensus 499 --------~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~- 568 (724)
.++-.--...+..+.. ..+.+ +......|..+...+.+.-|+..|-++...+|++|..-..+|.++..
T Consensus 710 ~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 710 LDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 1111111111222222 22222 44566778888999999999999999999999999977777755543
Q ss_pred -cc--------cHHHHHHHHHHHhhhccc--cHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh-----------hhh
Q psy6603 569 -DK--------KYDEAIKCYRNALKWEHD--NIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ-----------CMW 626 (724)
Q Consensus 569 -~~--------~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~ 626 (724)
++ ..-+++.++.+-.++... ..++.+++|..|-..|=..-|...|+.++..+|.. ..-
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrke 867 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKE 867 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHH
Confidence 22 245667777666665444 77999999999999999999999999999886421 112
Q ss_pred hhhhHHHHHHHhCChhHHHHHHHHHH
Q psy6603 627 FQTECALAYQRLGRWGDTLKKCHEVD 652 (724)
Q Consensus 627 ~~~~la~~~~~~g~~~~A~~~~~~~~ 652 (724)
..+.|..+|...|+...|.+++.+.+
T Consensus 868 AA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 868 AAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred HHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 22667789999999999999876543
No 27
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=6.4e-26 Score=243.32 Aligned_cols=194 Identities=11% Similarity=-0.028 Sum_probs=149.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc-chhhhhhHHHHHHH
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA-DRYINSKCAKYMLR 435 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 435 (724)
++..+...|.+.|++++|...|+++.+ | +...|..+...|.+.|+.++|++.|+++.+.... |...+..+...+.+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 445778888899999999999988754 3 4568899999999999999999999998876322 35566677888889
Q ss_pred cCCHHHHHHHHHHhhhcc-cCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhc
Q psy6603 436 ANLIKEAEETCSKFTREG-VSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILT 514 (724)
Q Consensus 436 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 514 (724)
.|..++|.++|+.+.+.. ..+... .+..+..++.+.|++++|.+.++++
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~--------~y~~li~~l~r~G~~~eA~~~~~~~---------------------- 488 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAM--------HYACMIELLGREGLLDEAYAMIRRA---------------------- 488 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCcc--------chHhHHHHHHhcCCHHHHHHHHHHC----------------------
Confidence 999999999999887632 111110 1123677788888877777765533
Q ss_pred CCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhh
Q psy6603 515 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW 585 (724)
Q Consensus 515 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 585 (724)
....+..+|..+...+...|+.+.|...+++++++.|.+...|..++.+|.+.|++++|.+.++.+.+.
T Consensus 489 --~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 489 --PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 333455678888888889999999999999998889988888888999999999999999999888764
No 28
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.96 E-value=1.1e-25 Score=241.58 Aligned_cols=464 Identities=12% Similarity=0.025 Sum_probs=365.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHH
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDL--KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE-HDNIQIMRDLSLLQ 106 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~ 106 (724)
.|..+...+...|++++|+..|+.+....| -+...+..+...+...++++.|...+..+.... ..+...+..+..+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 567777788899999999999999876543 345668888888889999999999999887753 22577888999999
Q ss_pred HHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCC
Q psy6603 107 IQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD 186 (724)
Q Consensus 107 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 186 (724)
.+.|+++.|.+.|+++.+ | +...|..+...|.+.|++++|+.+|+++.+.. ..| ....+..+...+...|.
T Consensus 169 ~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p-----~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDA-----EPRTFVVMLRASAGLGS 239 (697)
T ss_pred hcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCC-----ChhhHHHHHHHHhcCCc
Confidence 999999999999988753 3 56789999999999999999999999987653 233 23455666777888899
Q ss_pred HHHHHHHHHHHhhhh-ccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHH
Q psy6603 187 LEEAVKHLDRFKEQI-HDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHY 264 (724)
Q Consensus 187 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~ 264 (724)
...+.+++..+++.. ..+..++..+...|.+.|++++|...|+.+. +.+...|..+... ...|+.++|+.+|+++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999888777654 3456788889999999999999999998763 3456667776666 5679999999888877
Q ss_pred HHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy6603 265 ISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQD 344 (724)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 344 (724)
....-.
T Consensus 317 ~~~g~~-------------------------------------------------------------------------- 322 (697)
T PLN03081 317 RDSGVS-------------------------------------------------------------------------- 322 (697)
T ss_pred HHcCCC--------------------------------------------------------------------------
Confidence 543211
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccch
Q psy6603 345 EGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHT-PTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADR 423 (724)
Q Consensus 345 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 423 (724)
|+ ..++..+...+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .|.
T Consensus 323 -----pd---~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~ 391 (697)
T PLN03081 323 -----ID---QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNL 391 (697)
T ss_pred -----CC---HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCe
Confidence 11 1144577778888999999999999998876 45677889999999999999999999998765 356
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchH
Q psy6603 424 YINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYK 503 (724)
Q Consensus 424 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 503 (724)
..+..+...|.+.|+.++|+++|+++.+.+..+... ....+..++.+.|..++|.
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~--------T~~~ll~a~~~~g~~~~a~----------------- 446 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV--------TFLAVLSACRYSGLSEQGW----------------- 446 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH--------HHHHHHHHHhcCCcHHHHH-----------------
Confidence 678889999999999999999999998755432211 1122444555555555554
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHh
Q psy6603 504 NGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNAL 583 (724)
Q Consensus 504 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 583 (724)
++|+.+........+...|..+..++.+.|+.++|.+.++++- ..| +..+|..+...+...|+++.|...+++++
T Consensus 447 ---~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 447 ---EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred ---HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 4455544322334456689999999999999999999998752 233 44579999999999999999999999999
Q ss_pred hhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhh
Q psy6603 584 KWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLN 620 (724)
Q Consensus 584 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 620 (724)
++.|++...+..|+.+|...|+|++|.+.++.|....
T Consensus 522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999998665
No 29
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=2.6e-24 Score=231.73 Aligned_cols=528 Identities=11% Similarity=0.022 Sum_probs=316.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCC--CchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy6603 31 LAMKGLTLNCLGRKEEAYEYVRRGLRNDL--KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 108 (724)
Q Consensus 31 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 108 (724)
+..+-..+.+.|++++|+++|+.+...+. .+...+..+...+...|..++|...|+.... | +...+..+...+..
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k 449 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHh
Confidence 33333445577888888888887776543 2233344455566677788888877776654 3 45667777777778
Q ss_pred hcchHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCH
Q psy6603 109 MRDLEGYRETRYQLFMLRPT-QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL 187 (724)
Q Consensus 109 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 187 (724)
.|+++.|..+|.++.+.... +...+..+...|.+.|+.++|..+|+.+.+.. ..| +...|..+...|.+.|++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~P-----dvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEA-----NVHTFGALIDGCARAGQV 523 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCC-----CHHHHHHHHHHHHHCcCH
Confidence 88888888888877776533 56677777888888888888888877776543 223 355677777788888888
Q ss_pred HHHHHHHHHHhhhh-ccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHH----cCCcHHHHHHHHHHhccCChHHHHHHHH
Q psy6603 188 EEAVKHLDRFKEQI-HDKLTVEETYGALKLKLGQYNEAMKHYESLIER----NQENTLYYNKLVEAKQLTNNDDIFQLLT 262 (724)
Q Consensus 188 ~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~a~~~~~ 262 (724)
++|++.|.++.... ..+..++..+...+.+.|++++|...|.++... .|+...+...+..+.+.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888887776543 224566777788888888888888888877653 4544333333334456788888888888
Q ss_pred HHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCC
Q psy6603 263 HYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSL 342 (724)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 342 (724)
.+.+...... +..+..+...|...++ .++++..|.+....
T Consensus 604 ~M~e~gi~p~-------------------------------~~tynsLI~ay~k~G~---~deAl~lf~eM~~~------ 643 (1060)
T PLN03218 604 MIHEYNIKGT-------------------------------PEVYTIAVNSCSQKGD---WDFALSIYDDMKKK------ 643 (1060)
T ss_pred HHHHcCCCCC-------------------------------hHHHHHHHHHHHhcCC---HHHHHHHHHHHHHc------
Confidence 8777643321 1223333334443333 33333333333322
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-c
Q psy6603 343 QDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHT-PTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLD-T 420 (724)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~ 420 (724)
...|+ ..++..+...+.+.|++++|..+++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.... .
T Consensus 644 ----Gv~PD---~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 644 ----GVKPD---EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred ----CCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 11222 1244566677777777888877777777654 2345677777777777788888877777776542 1
Q ss_pred cchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhh
Q psy6603 421 ADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHK 500 (724)
Q Consensus 421 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 500 (724)
.+...+..+...+.+.|++++|.++|+.+...+..+.. ..+..+...+.+.|++++|.+++.++
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~--------~Ty~sLL~a~~k~G~le~A~~l~~~M-------- 780 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT--------ITYSILLVASERKDDADVGLDLLSQA-------- 780 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHHCCCHHHHHHHHHHH--------
Confidence 23556667777777777888887777777654322111 01111344555555555555544433
Q ss_pred chHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHH
Q psy6603 501 QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYR 580 (724)
Q Consensus 501 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 580 (724)
... ....+..++..+..++. +++++|....+..+..++.+ .....+..++|+.+|+
T Consensus 781 ------------~k~-Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g~---------~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 781 ------------KED-GIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSGR---------PQIENKWTSWALMVYR 836 (1060)
T ss_pred ------------HHc-CCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhccc---------cccccchHHHHHHHHH
Confidence 222 22223334444432222 34566655555444443222 2222334567999999
Q ss_pred HHhhh--ccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhh--hhhhhhhhHHHHHHHhCCh-hHHHHHHHHHHHHH
Q psy6603 581 NALKW--EHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEM--QCMWFQTECALAYQRLGRW-GDTLKKCHEVDRHF 655 (724)
Q Consensus 581 ~al~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~ 655 (724)
++++. .|+.. .+..+..+....+....+...++.+...+.. ...| ..+...+ |++ ++|...++++.+.
T Consensus 837 eM~~~Gi~Pd~~-T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y--~~Li~g~---~~~~~~A~~l~~em~~~- 909 (1060)
T PLN03218 837 ETISAGTLPTME-VLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL--STLVDGF---GEYDPRAFSLLEEAASL- 909 (1060)
T ss_pred HHHHCCCCCCHH-HHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh--HHHHHhh---ccChHHHHHHHHHHHHc-
Confidence 99884 35544 4444445667777777777777766544322 2333 3343333 443 5899999988865
Q ss_pred hhhhccc
Q psy6603 656 SEIIEDQ 662 (724)
Q Consensus 656 ~~~~~~~ 662 (724)
.+.|+.
T Consensus 910 -Gi~p~~ 915 (1060)
T PLN03218 910 -GVVPSV 915 (1060)
T ss_pred -CCCCCc
Confidence 555553
No 30
>KOG1173|consensus
Probab=99.96 E-value=5.7e-26 Score=212.35 Aligned_cols=478 Identities=17% Similarity=0.160 Sum_probs=283.4
Q ss_pred ccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHH
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAI 82 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 82 (724)
..+.+|..|+-..+++..-. .++.-.+.+|.+++-.|++..|...+..- .....+..+.+..+.++....++++|.
T Consensus 27 l~q~~y~~a~f~adkV~~l~---~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al 102 (611)
T KOG1173|consen 27 LMQHRYKTALFWADKVAGLT---NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQAL 102 (611)
T ss_pred HHHHhhhHHHHHHHHHHhcc---CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999987733 44456678899999999999998888765 555667888999999999999999999
Q ss_pred HHHHHH------HhhCCCc-------------------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHH
Q psy6603 83 KCYRNA------LKWEHDN-------------------IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFA 137 (724)
Q Consensus 83 ~~~~~a------~~~~p~~-------------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la 137 (724)
..+.+. +..+|.+ ..+.+..|.+|....+.++|...|.+++..++.+.++...+.
T Consensus 103 ~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lv 182 (611)
T KOG1173|consen 103 LVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLV 182 (611)
T ss_pred HHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 888732 1111211 224667788899999999999999999999999888777665
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH-HHhhhhccHhhHHHHHHHHHH
Q psy6603 138 MAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLD-RFKEQIHDKLTVEETYGALKL 216 (724)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-~~~~~~p~~~~~~~~la~~~~ 216 (724)
......-+-+ ..+++...-.. . ..........++.+ ..-...-+.+...-. ..+..-.+++++....++.+.
T Consensus 183 s~~mlt~~Ee--~~ll~~l~~a~-~-~~ed~e~l~~lyel---~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y 255 (611)
T KOG1173|consen 183 SAHMLTAQEE--FELLESLDLAM-L-TKEDVERLEILYEL---KLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLY 255 (611)
T ss_pred HHHhcchhHH--HHHHhcccHHh-h-hhhHHHHHHHHHHh---hhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHH
Confidence 5443322100 00000000000 0 00000000000000 000000000000000 111111233444555555555
Q ss_pred HcCChHHHHHHHHHHHHHcCCcHHH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHH
Q psy6603 217 KLGQYNEAMKHYESLIERNQENTLY-YNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYL 295 (724)
Q Consensus 217 ~~g~~~~A~~~~~~~~~~~p~~~~~-~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (724)
..+++.+..+.++..++.+|-+..+ -..++.++..|+..+-..+-.++++.+|....
T Consensus 256 ~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~---------------------- 313 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKAL---------------------- 313 (611)
T ss_pred HcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCc----------------------
Confidence 5555555555555555555544332 23344334555555555555555555555422
Q ss_pred HhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHH
Q psy6603 296 RHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKAL 375 (724)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 375 (724)
.|+.+|..|...|++.+|.
T Consensus 314 -------------------------------------------------------------sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 314 -------------------------------------------------------------SWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred -------------------------------------------------------------chhhHHHHHHHhcCcHHHH
Confidence 2334444444455555555
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccC
Q psy6603 376 NYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVS 455 (724)
Q Consensus 376 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 455 (724)
.+|.++..++|....+|...|..+.-.|..++|+.+|..|-++-|....-..-+|.-+.++++++-|...|..++...|.
T Consensus 333 ry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~ 412 (611)
T KOG1173|consen 333 RYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS 412 (611)
T ss_pred HHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 55555555555555555555555555555555555555555555554333344455555555555555555555555444
Q ss_pred ccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhc
Q psy6603 456 AMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCL 535 (724)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 535 (724)
..-.+ .++|.+.+..+.|.+|...|+.. +...+.+.. ..+.-...+.++|.++.++
T Consensus 413 Dplv~---------~Elgvvay~~~~y~~A~~~f~~~-------------l~~ik~~~~--e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 413 DPLVL---------HELGVVAYTYEEYPEALKYFQKA-------------LEVIKSVLN--EKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred cchhh---------hhhhheeehHhhhHHHHHHHHHH-------------HHHhhhccc--cccchhHHHHhHHHHHHHH
Confidence 32222 22355555555555555443322 211122111 2222344799999999999
Q ss_pred CChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHH
Q psy6603 536 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 598 (724)
Q Consensus 536 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 598 (724)
+++++|+..|++++.+.|.++.++..+|.+|..+|+++.|++.|.+++.+.|++..+...|+.
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999877776664
No 31
>KOG0548|consensus
Probab=99.96 E-value=1.1e-25 Score=209.80 Aligned_cols=434 Identities=15% Similarity=0.123 Sum_probs=267.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 111 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 111 (724)
...|...+..|+++.|+..|..++.++|.+...+.+...+|...|+|++|++.-.+.++++|+-+..|..+|..+.-+|+
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHHhhccCCCC---C
Q psy6603 112 LEGYRETRYQLFMLRPTQRASWIGFAMAYHLLH---------------------DFDMACNILEAFRKTQQVTNSY---D 167 (724)
Q Consensus 112 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~~~~~~~~~p~~---~ 167 (724)
+++|+..|.+.++.+|++.....+++.++.... ++-..-..|...+..++.+|.. .
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 666666666666666666666666665551110 0001111122233333333330 0
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHH---------HHHhhh------------hccHhhHHHHHHHHHHHcCChHHHHH
Q psy6603 168 FEHSELLLYQSMVIQDSGDLEEAVKHL---------DRFKEQ------------IHDKLTVEETYGALKLKLGQYNEAMK 226 (724)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~A~~~~---------~~~~~~------------~p~~~~~~~~la~~~~~~g~~~~A~~ 226 (724)
-..+.....++.+....-....+.... .+.... ..........+|....+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 000111111111100000000000000 000000 00113356778888889999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCch
Q psy6603 227 HYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPP 305 (724)
Q Consensus 227 ~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (724)
.|..+++++ .+...+...+.+ +..|.+...+.....+++.....
T Consensus 246 ~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~---------------------------------- 290 (539)
T KOG0548|consen 246 HYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL---------------------------------- 290 (539)
T ss_pred HHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH----------------------------------
Confidence 999999998 777777777666 66777777766655543322111
Q ss_pred hhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy6603 306 LFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHT 385 (724)
Q Consensus 306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 385 (724)
...|.- + ......+|..|...++++.|+.+|.+++...
T Consensus 291 ---------------------rad~kl-I--------------------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 291 ---------------------RADYKL-I--------------------AKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred ---------------------HHHHHH-H--------------------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 000000 1 0022246777777888888888888877655
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHH
Q psy6603 386 PTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQC 465 (724)
Q Consensus 386 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 465 (724)
.+ ..++......++++...+...-++|.-..-....|..+++.|++..|+..|.+++.
T Consensus 329 Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk-------------- 386 (539)
T KOG0548|consen 329 RT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK-------------- 386 (539)
T ss_pred cC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--------------
Confidence 44 44455555666666666666666665433333334444444444444444444433
Q ss_pred HHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHH
Q psy6603 466 MWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYV 545 (724)
Q Consensus 466 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 545 (724)
.+|+++..|.++|.||.++|.+..|+...
T Consensus 387 ---------------------------------------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da 415 (539)
T KOG0548|consen 387 ---------------------------------------------------RDPEDARLYSNRAACYLKLGEYPEALKDA 415 (539)
T ss_pred ---------------------------------------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44677889999999999999999999999
Q ss_pred HHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHH
Q psy6603 546 RRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSA 615 (724)
Q Consensus 546 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 615 (724)
+++++++|+...+|...|.++..+.+|++|.+.|+++++.+|++.++...+..|...+.....-.++.+.
T Consensus 416 ~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 416 KKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999888876444444555554
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.96 E-value=2.9e-24 Score=224.83 Aligned_cols=464 Identities=11% Similarity=-0.000 Sum_probs=342.9
Q ss_pred HcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHH
Q psy6603 56 RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIG 135 (724)
Q Consensus 56 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 135 (724)
-..|+.+...+..+.+..+.|++..|+..|+++++.+|.++.....++.++...|+.++|+..+++++...|........
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 46788888999999999999999999999999999999997555599999999999999999999999444445555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHH
Q psy6603 136 FAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALK 215 (724)
Q Consensus 136 la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 215 (724)
+|.++...|++++|+.+|+++++..+. ++.++..++.++...++.++|++.++++...+|.+... ..++.++
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~-------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPT-------NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 588999999999999999998776633 45577788999999999999999999999999986655 6667777
Q ss_pred HHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHh-ccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHH
Q psy6603 216 LKLGQYNEAMKHYESLIERNQENTLYYNKLVEAK-QLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKY 294 (724)
Q Consensus 216 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (724)
...++..+|+..++++++.+|++..++..+...+ ..|-...|.+...+ .|+..... +...
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~----~p~~f~~~----------~~~~----- 240 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE----NPNLVSAE----------HYRQ----- 240 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh----CccccCHH----------HHHH-----
Confidence 7788888899999999999999999988888774 45777777654433 44321100 0000
Q ss_pred HHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHH
Q psy6603 295 LRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKA 374 (724)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 374 (724)
+ ....+.+...-+... . ...+. +---.+.|
T Consensus 241 ------------------l--------~~~~~a~~vr~a~~~-----~----~~~~~---------------r~~~~d~a 270 (822)
T PRK14574 241 ------------------L--------ERDAAAEQVRMAVLP-----T----RSETE---------------RFDIADKA 270 (822)
T ss_pred ------------------H--------HHHHHHHHHhhcccc-----c----ccchh---------------hHHHHHHH
Confidence 0 000111111111000 0 00000 01124667
Q ss_pred HHHHHHHHhc---CCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-ccchhhhhhHHHHHHHcCCHHHHHHHH
Q psy6603 375 LNYINAAIDH---TPTL----IELFVTKGRIYKHAGDVLEAYKWLDEAQSLD-TADRYINSKCAKYMLRANLIKEAEETC 446 (724)
Q Consensus 375 ~~~~~~~l~~---~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 446 (724)
+..++..+.. .|.. ..+..-.-.++...|++.+++..|+.+.... |-..++...+|..|+..++.++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 7777887773 3432 2334455567788899999999999988765 445678888999999999999999999
Q ss_pred HHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHH
Q psy6603 447 SKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLA 526 (724)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 526 (724)
..++...++... .+.......
T Consensus 351 ~~~~~~~~~~~~-----------------------------------------------------------~~~~~~~~~ 371 (822)
T PRK14574 351 SSLYYSDGKTFR-----------------------------------------------------------NSDDLLDAD 371 (822)
T ss_pred HHHhhccccccC-----------------------------------------------------------CCcchHHHH
Confidence 998775432100 111111223
Q ss_pred hhhhHhhhcCChHHHHHHHHHhhhc---------------CCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHH
Q psy6603 527 MKGLTLNCLGRKEEAYEYVRRGLRN---------------DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 591 (724)
Q Consensus 527 ~l~~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 591 (724)
.|-.++...+++++|..++++..+. +|+...+...++.++...|++.+|.+.+++.+...|.|+.
T Consensus 372 ~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~ 451 (822)
T PRK14574 372 DLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQN 451 (822)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 4444555555555555555555543 3333447778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhh
Q psy6603 592 IMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ-CMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSE 657 (724)
Q Consensus 592 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 657 (724)
++..+|.++...|....|.+.++.++...|.. ... ..+|.++...|++.+|.+..+.+++.+|+
T Consensus 452 l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~--~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 452 LRIALASIYLARDLPRKAEQELKAVESLAPRSLILE--RAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999988887776 333 67888999999999999999999988554
No 33
>KOG0495|consensus
Probab=99.96 E-value=7.5e-23 Score=194.32 Aligned_cols=546 Identities=14% Similarity=0.082 Sum_probs=404.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHH
Q psy6603 41 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRY 120 (724)
Q Consensus 41 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 120 (724)
.++..+|..+++...+.+|.++..|..-+.+-...|++..|.....+..+..|.+.++|..-.. +...+.|..+.-
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHH
Confidence 3577899999999999999999999999999999999999999999999999999999887654 467777999999
Q ss_pred HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q psy6603 121 QLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQ 200 (724)
Q Consensus 121 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 200 (724)
.++...|..+..|+.-+.+-....+- ..++.++++.. |+ ....|- ......+.+.|...+.++++.
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K---~RVlRKALe~i---P~----sv~LWK----aAVelE~~~darilL~rAvec 405 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDTKNK---KRVLRKALEHI---PR----SVRLWK----AAVELEEPEDARILLERAVEC 405 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHHHHH---HHHHHHHHHhC---Cc----hHHHHH----HHHhccChHHHHHHHHHHHHh
Confidence 99999999999998877765443332 23334444444 54 333443 445567777899999999999
Q ss_pred hccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCc-ccccc
Q psy6603 201 IHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATV-PKRLS 278 (724)
Q Consensus 201 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 278 (724)
.|.+.+.|..++. +.-|+.|.+.+.++-+.-|.++..|...+.+ -..|+.+....+..+.+.....+.. ..+-.
T Consensus 406 cp~s~dLwlAlar----LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdq 481 (913)
T KOG0495|consen 406 CPQSMDLWLALAR----LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQ 481 (913)
T ss_pred ccchHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHH
Confidence 9999988877665 4668999999999999999999999999888 5578988888888887665433211 10000
Q ss_pred cc-----ccCch---hHHHHHHHHHHhhhh-cCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q psy6603 279 LN-----YVSGD---QFRTEIDKYLRHGFH-KGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVE 349 (724)
Q Consensus 279 ~~-----~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 349 (724)
.. ....+ .-...+...+..... ....+.+..-+..+.. ...++-+...|..++ ...
T Consensus 482 Wl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k---~~~~~carAVya~al------------qvf 546 (913)
T KOG0495|consen 482 WLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK---RPAIECARAVYAHAL------------QVF 546 (913)
T ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh---cchHHHHHHHHHHHH------------hhc
Confidence 00 00000 000000001111111 1111222222222222 122334444555555 344
Q ss_pred chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhH
Q psy6603 350 PASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKC 429 (724)
Q Consensus 350 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 429 (724)
|....+|. ..+..-...|..+.-..++++++...|.....|...+..+...|+...|...+..+++.+|++..++...
T Consensus 547 p~k~slWl--ra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa 624 (913)
T KOG0495|consen 547 PCKKSLWL--RAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA 624 (913)
T ss_pred cchhHHHH--HHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 55666554 4555555678888888888888888888888888888888888999999999999998888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHH
Q psy6603 430 AKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFA 509 (724)
Q Consensus 430 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~ 509 (724)
..+.....+++.|..+|.++....+.. .+|+. .+.....+++.++|+++++++
T Consensus 625 vKle~en~e~eraR~llakar~~sgTe--------Rv~mK--s~~~er~ld~~eeA~rllEe~----------------- 677 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSISGTE--------RVWMK--SANLERYLDNVEEALRLLEEA----------------- 677 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhccCCcc--------hhhHH--HhHHHHHhhhHHHHHHHHHHH-----------------
Confidence 888888888899988888887654432 23433 355555566666666654433
Q ss_pred HHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhcccc
Q psy6603 510 KQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN 589 (724)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 589 (724)
+. .+|.....|.++|.++.++++.+.|.+.|...++..|.++..|..++.+-.+.|+...|...+.++.-.+|++
T Consensus 678 --lk---~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 678 --LK---SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred --HH---hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence 33 4556667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh-hh----------------------------hhhhhHHHHHHHhCC
Q psy6603 590 IQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ-CM----------------------------WFQTECALAYQRLGR 640 (724)
Q Consensus 590 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----------------------------~~~~~la~~~~~~g~ 640 (724)
...|.....+-...|+.+.|.....++++..|++ .. .+....|..+....+
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999888766544432 22 223677888889999
Q ss_pred hhHHHHHHHHHHHHHhh
Q psy6603 641 WGDTLKKCHEVDRHFSE 657 (724)
Q Consensus 641 ~~~A~~~~~~~~~~~~~ 657 (724)
+++|.+.|+++++..++
T Consensus 833 ~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHHHHHccCCc
Confidence 99999999999987443
No 34
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=2e-23 Score=224.95 Aligned_cols=507 Identities=11% Similarity=0.045 Sum_probs=317.1
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhcchHHHHHHHH
Q psy6603 43 RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH--DNIQIMRDLSLLQIQMRDLEGYRETRY 120 (724)
Q Consensus 43 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~ 120 (724)
+...++..++......++ ...+..+-..+.+.|++++|+..|+.+...+. .+...+..+...+...|..++|...++
T Consensus 352 ~~~~~~~~~~~~~~~~~~-~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~ 430 (1060)
T PLN03218 352 EEENSLAAYNGGVSGKRK-SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK 430 (1060)
T ss_pred hhhhhHHHhccccCCCCC-chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445566666666655444 33344444555678999999999999987653 334455566777888999999999987
Q ss_pred HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q psy6603 121 QLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQ 200 (724)
Q Consensus 121 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 200 (724)
.+.. | +...|..+...+...|++++|..+++.+.+.. ..| +...+..+...|.+.|+.++|.++|+++.+.
T Consensus 431 ~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-l~p-----D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~ 501 (1060)
T PLN03218 431 LIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKA-----DCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501 (1060)
T ss_pred HcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCC-----CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence 7654 4 56788899999999999999999999987654 233 4567888899999999999999999999876
Q ss_pred hc-cHhhHHHHHHHHHHHcCChHHHHHHHHHHHHH--cCCcHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCCCCc
Q psy6603 201 IH-DKLTVEETYGALKLKLGQYNEAMKHYESLIER--NQENTLYYNKLVEAKQLTNNDDIFQLLTHYISK----YPKATV 273 (724)
Q Consensus 201 ~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 273 (724)
.. .+..+|..+...|.+.|++++|...|+.+... .|+...+...+..+.+.|+.++|.+++.++... .|+.
T Consensus 502 Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-- 579 (1060)
T PLN03218 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-- 579 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH--
Confidence 53 36788999999999999999999999999765 455444444444446789999999999999864 2322
Q ss_pred cccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhH
Q psy6603 274 PKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASA 353 (724)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 353 (724)
..+..+...|...++ ++++...|...... .. +++.
T Consensus 580 -------------------------------vTynaLI~ay~k~G~---ldeA~elf~~M~e~----------gi-~p~~ 614 (1060)
T PLN03218 580 -------------------------------ITVGALMKACANAGQ---VDRAKEVYQMIHEY----------NI-KGTP 614 (1060)
T ss_pred -------------------------------HHHHHHHHHHHHCCC---HHHHHHHHHHHHHc----------CC-CCCh
Confidence 122333333333333 33333333333322 11 1111
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc-cchhhhhhHH
Q psy6603 354 LLWVYHYLAQHYDHLGDTMKALNYINAAIDH--TPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDT-ADRYINSKCA 430 (724)
Q Consensus 354 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~ 430 (724)
. ++..+...|.+.|++++|+.+|+++.+. .|+ ...+..+...+.+.|++++|.++++.+.+... .+...+..+.
T Consensus 615 ~--tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 615 E--VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred H--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2 3445666666667777777776666654 343 44566666666666777777776666666532 2345566666
Q ss_pred HHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHH
Q psy6603 431 KYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAK 510 (724)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~ 510 (724)
..|.+.|++++|.++|+.+...+..+. ...+..+...|.+.|++++|++.|.++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~Pd--------vvtyN~LI~gy~k~G~~eeAlelf~eM------------------ 745 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPT--------VSTMNALITALCEGNQLPKALEVLSEM------------------ 745 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHH------------------
Confidence 666666777777766666654322110 111122455555555555555544433
Q ss_pred HHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccc-hHHHHHHHHhccccHHHHHHHHHHHhhhcccc
Q psy6603 511 QILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV-CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN 589 (724)
Q Consensus 511 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 589 (724)
... ....+..+|..+...+.+.|++++|..++.++++....... .+..+..++ .+++++|....+..+..++.+
T Consensus 746 --~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc--~~~y~ka~~l~~~v~~f~~g~ 820 (1060)
T PLN03218 746 --KRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC--LRRFEKACALGEPVVSFDSGR 820 (1060)
T ss_pred --HHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHHHHHHhhhhhhhhhhhccc
Confidence 211 22334456666667777777777777777777665332222 222222211 134556655555554443322
Q ss_pred HHHHHHHHHHHHHhhhHhhHHHHHHHHHhhh--hhhhhhhhhhHHHHHHHhCChhHHHHHHHHH
Q psy6603 590 IQIMRDLSLLQIQMRDLEGYREGVSAMENLN--EMQCMWFQTECALAYQRLGRWGDTLKKCHEV 651 (724)
Q Consensus 590 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 651 (724)
+. ...+..+.|...|+.|.... |+...| ..+..|+...+....+...++.+
T Consensus 821 ~~---------~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~--~~vL~cl~~~~~~~~~~~m~~~m 873 (1060)
T PLN03218 821 PQ---------IENKWTSWALMVYRETISAGTLPTMEVL--SQVLGCLQLPHDATLRNRLIENL 873 (1060)
T ss_pred cc---------cccchHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHhcccccHHHHHHHHHHh
Confidence 11 11123356888888887665 454555 33445777778877776666543
No 35
>KOG1127|consensus
Probab=99.96 E-value=2.3e-24 Score=214.03 Aligned_cols=378 Identities=15% Similarity=0.098 Sum_probs=275.0
Q ss_pred cCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhcc-CChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHH
Q psy6603 218 LGQYNEAMKHYESLIERNQENTLYYNKLVEAKQL-TNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLR 296 (724)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (724)
.++...|...|-++++++|....++..+|..++. .+...|.+.|.++.+.++....+.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaa--------------------- 529 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAA--------------------- 529 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhH---------------------
Confidence 3458899999999999999999999999999763 578889999999999988764321
Q ss_pred hhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHH
Q psy6603 297 HGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALN 376 (724)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 376 (724)
......|..... .+.+.......- +..+.....|.+..+|..|.+.+++.+|+.
T Consensus 530 -----------aa~adtyae~~~---we~a~~I~l~~~------------qka~a~~~k~nW~~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 530 -----------AASADTYAEEST---WEEAFEICLRAA------------QKAPAFACKENWVQRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred -----------HHHHHHhhcccc---HHHHHHHHHHHh------------hhchHHHHHhhhhhccccccCccchhhHHH
Confidence 112222222222 111111111111 344444555566678999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCc
Q psy6603 377 YINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSA 456 (724)
Q Consensus 377 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 456 (724)
.|+.++..+|.+..+|..+|.+|...|++..|++.|.++..++|.+.+..+..+......|++.+|+..+...+......
T Consensus 584 ~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e 663 (1238)
T KOG1127|consen 584 EFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE 663 (1238)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988633221
Q ss_pred cCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhh----------------------Hhhh---h------------
Q psy6603 457 MENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDR----------------------KCYE---H------------ 499 (724)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----------------------~~~~---~------------ 499 (724)
.+........+ ..++..+...|-...|...++.... .|+- .
T Consensus 664 ~~~q~gLaE~~--ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~i 741 (1238)
T KOG1127|consen 664 RTGQNGLAESV--IRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLII 741 (1238)
T ss_pred HHhhhhHHHHH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHH
Confidence 11111110011 1122222223333333333333220 0000 0
Q ss_pred --hchH------------HHHHHHHHHhcCCCCCchhHHHHhhhhHhhh--------cCChHHHHHHHHHhhhcCCCccc
Q psy6603 500 --KQYK------------NGLKFAKQILTNPKYAEHGETLAMKGLTLNC--------LGRKEEAYEYVRRGLRNDLKSHV 557 (724)
Q Consensus 500 --~~~~------------~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~al~~~p~~~~ 557 (724)
++++ -+.+.+-.-. ....++..|+++|..|.+ +.+...|+.+++++++++.++..
T Consensus 742 l~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~ 818 (1238)
T KOG1127|consen 742 LSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEG 818 (1238)
T ss_pred HHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHH
Confidence 0000 0111111100 111234578999988877 23445899999999999999999
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHHH
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ-CMWFQTECALAYQ 636 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~ 636 (724)
.|+.||.+ ...|++.-|..+|-+.+..+|.+.-+|.++|.+..+..|++.|..++..++.+.|.. ..| ...+.+..
T Consensus 819 ~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~W--lG~Ali~e 895 (1238)
T KOG1127|consen 819 LWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQW--LGEALIPE 895 (1238)
T ss_pred HHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHH--HHHHHhHH
Confidence 99999998 667999999999999999999999999999999999999999999999999999887 889 44667889
Q ss_pred HhCChhHHHHHHHH
Q psy6603 637 RLGRWGDTLKKCHE 650 (724)
Q Consensus 637 ~~g~~~~A~~~~~~ 650 (724)
..|+.-++...|..
T Consensus 896 avG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 896 AVGRIIERLILFAH 909 (1238)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
No 36
>KOG2003|consensus
Probab=99.95 E-value=1.4e-24 Score=197.22 Aligned_cols=450 Identities=14% Similarity=0.099 Sum_probs=292.6
Q ss_pred cchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCc-----hhHHHHHHHHHhhcCCHHH
Q psy6603 6 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS-----HVCWHVYGLLQRSDKKYDE 80 (724)
Q Consensus 6 ~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~lg~~~~~~g~~~~ 80 (724)
.-+.+|+..|+-++++.-+|+....-..+|.++++..+|.+|+++|+-++..-|.- .....++|..+.+.|+|+.
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 34678899999988876788888888899999999999999999999999887753 3347778999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CC---------ch-hHHHHHHHH-----HHHc
Q psy6603 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLR--PT---------QR-ASWIGFAMA-----YHLL 143 (724)
Q Consensus 81 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~---------~~-~~~~~la~~-----~~~~ 143 (724)
|+..|..+++..|+.. +-++|..|++..|+-++-.+.|.+++.+- |+ +| ..+..-+.- -...
T Consensus 295 ainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 295 AINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred hHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 9999999999888755 44567788899999999999999988642 11 11 111111111 1112
Q ss_pred CCHHHHHHHHHHHHHhhc--cCCCCC----------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHh
Q psy6603 144 HDFDMACNILEAFRKTQQ--VTNSYD----------------FEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKL 205 (724)
Q Consensus 144 g~~~~A~~~~~~~~~~~~--~~p~~~----------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 205 (724)
.+-..|.+.+-...+.+. ..|+.. +...+.-...+..+.+.|+++.|++.++-.-+.+....
T Consensus 374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred hhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 233344444444333331 112100 00011112223344444444444444443333222211
Q ss_pred -hHHHHHHHHHHHc--CChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccc
Q psy6603 206 -TVEETYGALKLKL--GQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNY 281 (724)
Q Consensus 206 -~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 281 (724)
.+-.++..+++.+ .++..|.++-..++..+.-++.+...-+.. +..|++++|.+.|++++..+
T Consensus 454 saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd------------- 520 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND------------- 520 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc-------------
Confidence 1222232222221 234444444444444444444444444433 33444444444333332211
Q ss_pred cCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHH
Q psy6603 282 VSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYL 361 (724)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 361 (724)
..-..+++.+
T Consensus 521 ----------------------------------------------------------------------asc~ealfni 530 (840)
T KOG2003|consen 521 ----------------------------------------------------------------------ASCTEALFNI 530 (840)
T ss_pred ----------------------------------------------------------------------hHHHHHHHHh
Confidence 1112255677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHH
Q psy6603 362 AQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKE 441 (724)
Q Consensus 362 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~ 441 (724)
|..+...|+.++|+.+|-+.-.+--++.++++.++.+|..+.+..+|++++.++..+-|+|+.+...++..|-+.|+-.+
T Consensus 531 glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 531 GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh
Confidence 77777778888888887777666667777777888888888888888888888888778777777777777777676666
Q ss_pred HHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCch
Q psy6603 442 AEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEH 521 (724)
Q Consensus 442 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 521 (724)
|.+++-.... -+|.+
T Consensus 611 afq~~ydsyr-----------------------------------------------------------------yfp~n 625 (840)
T KOG2003|consen 611 AFQCHYDSYR-----------------------------------------------------------------YFPCN 625 (840)
T ss_pred hhhhhhhccc-----------------------------------------------------------------ccCcc
Confidence 6554322211 34667
Q ss_pred hHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Q psy6603 522 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 601 (724)
Q Consensus 522 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 601 (724)
.++.-++|.-|....-.++|+.+|+++.-+.|+.......++.|+.+.|+|.+|.+.|+..-...|.+.+.+.-|.++.-
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 77888888888888889999999999999999888888888999999999999999999999999999988888777665
Q ss_pred Hhh
Q psy6603 602 QMR 604 (724)
Q Consensus 602 ~~~ 604 (724)
.+|
T Consensus 706 dlg 708 (840)
T KOG2003|consen 706 DLG 708 (840)
T ss_pred ccc
Confidence 554
No 37
>KOG2003|consensus
Probab=99.95 E-value=1.6e-24 Score=196.70 Aligned_cols=489 Identities=13% Similarity=0.123 Sum_probs=357.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH-----h
Q psy6603 131 ASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK-----L 205 (724)
Q Consensus 131 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~ 205 (724)
.++++++.-|.....+.+|+..|+-..+.- .-|+ ....-.++|.++++..++.+|+++|+-++...|.- .
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknk-mf~n----ag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNK-MFPN----AGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhccc-ccCC----CceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHH
Confidence 578889999999999999998887765432 2232 33455678999999999999999999999988753 4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcccccccccc-Cc
Q psy6603 206 TVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYV-SG 284 (724)
Q Consensus 206 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 284 (724)
.++.++|..+.+.|+|+.|+..|+.+++..|+....+......+..|+-++..+.|.+++...-.......+.-.-- ..
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 57888999999999999999999999999999888888777778899999999999999876332221111000000 00
Q ss_pred hhHHHHHHH-HHHhhhhcC--Cch-hhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHH
Q psy6603 285 DQFRTEIDK-YLRHGFHKG--VPP-LFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHY 360 (724)
Q Consensus 285 ~~~~~~~~~-~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (724)
.-..+++.. .++.+.... ... .....+.+..-.-. ..+..-.+...+.++... ........-..
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~-~~fa~g~dwcle~lk~s~-----------~~~la~dlei~ 424 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIA-PDFAAGCDWCLESLKASQ-----------HAELAIDLEIN 424 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccc-cchhcccHHHHHHHHHhh-----------hhhhhhhhhhh
Confidence 001111110 011110000 000 00000000000000 000000011111111100 00011112335
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCccchhhhhhHHHHHHHcC
Q psy6603 361 LAQHYDHLGDTMKALNYINAAIDHTPT-LIELFVTKGRIYKHAG--DVLEAYKWLDEAQSLDTADRYINSKCAKYMLRAN 437 (724)
Q Consensus 361 la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g 437 (724)
.+..+.+.|+++.|+++++-.-+.+.. ...+-.++..+++.+| ++.+|..+-..++.++.-++.....-|.+.+..|
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecC
Confidence 566788899999999998766555443 2334566666666655 7899999999999999988888888899999999
Q ss_pred CHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCC
Q psy6603 438 LIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPK 517 (724)
Q Consensus 438 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 517 (724)
++++|.+.|+.++..+.+. .-..+++|..+..+|+.++|+++|-++ ..+..
T Consensus 505 d~dka~~~ykeal~ndasc---------~ealfniglt~e~~~~ldeald~f~kl-----------------h~il~--- 555 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASC---------TEALFNIGLTAEALGNLDEALDCFLKL-----------------HAILL--- 555 (840)
T ss_pred cHHHHHHHHHHHHcCchHH---------HHHHHHhcccHHHhcCHHHHHHHHHHH-----------------HHHHH---
Confidence 9999999999999755443 335567899999999999999988766 23444
Q ss_pred CCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHH
Q psy6603 518 YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 597 (724)
Q Consensus 518 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 597 (724)
+++++++.++.+|..+.+..+|++++-++..+-|++|.++..+|.+|-+.|+-.+|..++-......|.+.++.--|+
T Consensus 556 --nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 556 --NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred --hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhHHHHHhh
Q psy6603 598 LLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEIIEDQFDFHTYCMRK 672 (724)
Q Consensus 598 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (724)
.-|....-++.++..++.+....|+...|. ..++.|+.+.|+|..|.+.|+.+..+|+ ..+++..++.|.
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~kwq-lmiasc~rrsgnyqka~d~yk~~hrkfp----edldclkflvri 703 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQ-LMIASCFRRSGNYQKAFDLYKDIHRKFP----EDLDCLKFLVRI 703 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHHHHH-HHHHHHHHhcccHHHHHHHHHHHHHhCc----cchHHHHHHHHH
Confidence 999999999999999999999999999885 6788999999999999999999998855 445666666554
No 38
>KOG1155|consensus
Probab=99.95 E-value=2e-23 Score=190.39 Aligned_cols=420 Identities=12% Similarity=0.095 Sum_probs=262.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhh--------------cCCHH---HHHHHHHHHHhh-
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS--------------DKKYD---EAIKCYRNALKW- 91 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~--------------~g~~~---~A~~~~~~a~~~- 91 (724)
..+.+|..++....++.|.-.++.... +..... ..+...+.. .+.+. .....+.+-++.
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s--~k~~FL-~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~~ 156 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKS--KKSAFL-RLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLESK 156 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcch--HHHHHH-HHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHHH
Confidence 346788888888888888888776543 221111 111111110 01111 111111111211
Q ss_pred ---CCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCCh
Q psy6603 92 ---EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDF 168 (724)
Q Consensus 92 ---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 168 (724)
...++..++..|.++.+.|....|+..|..++...|-+..+|..|+.+.... +. ......-. |. .
T Consensus 157 ~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~---e~----~~~l~~~l---~~--~ 224 (559)
T KOG1155|consen 157 HCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI---EI----LSILVVGL---PS--D 224 (559)
T ss_pred HhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH---HH----HHHHHhcC---cc--c
Confidence 2344567778888888888888888888888888888888888877654321 11 11111111 11 0
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-hccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy6603 169 EHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQ-IHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVE 247 (724)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 247 (724)
.+.-.-+.++.++....+.++++.-++..... .|.+.......|.+...+.++++|+..|+.+.+.+|-..+-......
T Consensus 225 ~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN 304 (559)
T KOG1155|consen 225 MHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSN 304 (559)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhH
Confidence 12333345566666666777777777777666 67777777777777777777777777777777777643332222222
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHH
Q psy6603 248 AKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLV 327 (724)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 327 (724)
++ .+..+..+....
T Consensus 305 ~L--------------------------------------------------------------Yv~~~~skLs~L---- 318 (559)
T KOG1155|consen 305 VL--------------------------------------------------------------YVKNDKSKLSYL---- 318 (559)
T ss_pred HH--------------------------------------------------------------HHHhhhHHHHHH----
Confidence 21 000000000000
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q psy6603 328 ESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLE 407 (724)
Q Consensus 328 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 407 (724)
...+....++ . ..+...+|..|.-.++.++|+.+|+++++++|....+|..+|.=|..+.+...
T Consensus 319 ---A~~v~~idKy--------R-----~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 319 ---AQNVSNIDKY--------R-----PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred ---HHHHHHhccC--------C-----ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHH
Confidence 0000000000 0 01334667778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhh
Q psy6603 408 AYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLK 487 (724)
Q Consensus 408 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 487 (724)
|+..|++|++++|.|-..++.+|..|.-++...=|+-.|+++.+
T Consensus 383 Ai~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~------------------------------------ 426 (559)
T KOG1155|consen 383 AIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE------------------------------------ 426 (559)
T ss_pred HHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh------------------------------------
Confidence 99999999999999888887777777777766666666666654
Q ss_pred hhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHh
Q psy6603 488 KCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567 (724)
Q Consensus 488 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 567 (724)
--|.++..|..+|.||.++++.++|+++|++++..+..+..++..+|.+|.
T Consensus 427 -----------------------------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 427 -----------------------------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred -----------------------------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 123455577777777777777777777777777777666677777777777
Q ss_pred ccccHHHHHHHHHHHhh-------hccccHHHHHHHHHHHHHhhhHhhHHH
Q psy6603 568 SDKKYDEAIKCYRNALK-------WEHDNIQIMRDLSLLQIQMRDLEGYRE 611 (724)
Q Consensus 568 ~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~a~~ 611 (724)
++++.++|..+|++.++ .+|+-..+..-|+.-..+.+++++|..
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 77777777777777776 334444444445555555555554443
No 39
>KOG1127|consensus
Probab=99.95 E-value=3.5e-23 Score=205.67 Aligned_cols=649 Identities=13% Similarity=0.043 Sum_probs=422.5
Q ss_pred chhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch--------------------hHHH
Q psy6603 7 QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH--------------------VCWH 66 (724)
Q Consensus 7 ~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--------------------~~~~ 66 (724)
....|..+|+.++. .+|.+ ....|.+......|.+|...+.......-+++ ...+
T Consensus 383 ~l~~as~~Ydn~lS--aD~sn---~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~ 457 (1238)
T KOG1127|consen 383 ILSWASICYDNALS--ADASN---QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLE 457 (1238)
T ss_pred HHHHHHHHHHHhhc--CChhh---hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHH
Confidence 34456667777777 44433 45556666666667777666666554431111 0001
Q ss_pred HH-----HHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy6603 67 VY-----GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYH 141 (724)
Q Consensus 67 ~l-----g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 141 (724)
.. +..-...++...|...|-++++++|....++..||.+|....+...|.++|+++.+++|.+..++-..+..|.
T Consensus 458 ~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtya 537 (1238)
T KOG1127|consen 458 CENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYA 537 (1238)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh
Confidence 11 1111224568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCCh
Q psy6603 142 LLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQY 221 (724)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 221 (724)
+..+++.|..+.- ...+..|. ......|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++
T Consensus 538 e~~~we~a~~I~l---~~~qka~a--~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry 612 (1238)
T KOG1127|consen 538 EESTWEEAFEICL---RAAQKAPA--FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY 612 (1238)
T ss_pred ccccHHHHHHHHH---HHhhhchH--HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce
Confidence 9999999987733 33333333 334556777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccc--------cccccccC-------ch
Q psy6603 222 NEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPK--------RLSLNYVS-------GD 285 (724)
Q Consensus 222 ~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~-------~~ 285 (724)
..|++.|.++..++|.+.-..+..+.+ ...|.+.+++..+..++.......... +....... .+
T Consensus 613 ~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd 692 (1238)
T KOG1127|consen 613 SHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVD 692 (1238)
T ss_pred ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999998888877777 567999999999988877654432211 11111100 12
Q ss_pred hHHHHHHHHHHhhhhc--CCchhhhh--------------------hHHhhhchhhH------HHHHHHHHHHHHHHhhc
Q psy6603 286 QFRTEIDKYLRHGFHK--GVPPLFVN--------------------LRSLYSNTEKC------KIIQDLVESYVEALSKT 337 (724)
Q Consensus 286 ~~~~~~~~~~~~~~~~--~~~~~~~~--------------------l~~~~~~~~~~------~~~~~~~~~~~~~l~~~ 337 (724)
-+++.+..+....... .....+.. +..+..+..+. +...-..+.+...++.
T Consensus 693 ~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl- 771 (1238)
T KOG1127|consen 693 FFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL- 771 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH-
Confidence 2223332222111111 00000000 00011100000 0001111111111111
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q psy6603 338 GHFSLQDEGEVEPASALLWVYHYLAQHYDH--------LGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAY 409 (724)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 409 (724)
......++++|..|.+ ..+...|+.++.++++...++...|..+|.+ ...|++.-|.
T Consensus 772 --------------~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQ 836 (1238)
T KOG1127|consen 772 --------------AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQ 836 (1238)
T ss_pred --------------hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhh
Confidence 0112245677776665 2334589999999999999999999999988 6668999999
Q ss_pred HHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhh
Q psy6603 410 KWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKC 489 (724)
Q Consensus 410 ~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 489 (724)
.+|-+.+...|.....+..+|...+...+++-|...|.++...+|.... .| .+.+.+....|+.-+++..|
T Consensus 837 HCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~-------~W--lG~Ali~eavG~ii~~~~lf 907 (1238)
T KOG1127|consen 837 HCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLV-------QW--LGEALIPEAVGRIIERLILF 907 (1238)
T ss_pred hhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhH-------HH--HHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887776432 33 23566666777777777766
Q ss_pred hhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHH----------HHHHhhhcCCCccchH
Q psy6603 490 HEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYE----------YVRRGLRNDLKSHVCW 559 (724)
Q Consensus 490 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----------~~~~al~~~p~~~~~~ 559 (724)
......+...|. ......|.+--......|++++-+. ..++.+...|+...++
T Consensus 908 aHs~el~~~~gk-----------------a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy 970 (1238)
T KOG1127|consen 908 AHSDELCSKEGK-----------------AKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAY 970 (1238)
T ss_pred HhhHHhhccccc-----------------cchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHH
Confidence 643211111111 1111233333344444555544443 4445556688888899
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhhh------ccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHH
Q psy6603 560 HVYGLLQRSDKKYDEAIKCYRNALKW------EHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECAL 633 (724)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 633 (724)
...|.....++.+.+|.+.+.+++.+ ...+..+....|++++..|+++.|...+........ +.- .....
T Consensus 971 ~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evd--Edi--~gt~l 1046 (1238)
T KOG1127|consen 971 AANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVD--EDI--RGTDL 1046 (1238)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHH--HHH--hhhhH
Confidence 99999999999999999988887762 223344777888999999999877765553221111 111 11222
Q ss_pred HHHHhCChhHHHHHHHHHHHHHhhhhcccchhHHHHHhhhhHHH------HHHHHhHHhhhcCChHHHHHHHHHHHHHHH
Q psy6603 634 AYQRLGRWGDTLKKCHEVDRHFSEIIEDQFDFHTYCMRKMTLRS------YVRLLRLEDVLRSHPFYYTAARCAIQVYLR 707 (724)
Q Consensus 634 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------y~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 707 (724)
..+-.|+++++.+.|++++.. ..+..+....+... .... -...-..-+++...+.-..+.....-+|..
T Consensus 1047 ~lFfkndf~~sl~~fe~aLsi----s~se~d~vvLl~kv-a~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~il 1121 (1238)
T KOG1127|consen 1047 TLFFKNDFFSSLEFFEQALSI----SNSESDKVVLLCKV-AVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYIL 1121 (1238)
T ss_pred HHHHHhHHHHHHHHHHHHhhh----cccccchhhhhHHH-HHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHH
Confidence 447788999999999988866 23322322221111 1100 001122233444555566666667777777
Q ss_pred hhcCCCCCC
Q psy6603 708 LHDRPCTLD 716 (724)
Q Consensus 708 ~~~~~~~~~ 716 (724)
+-|+..-+.
T Consensus 1122 d~da~~ssa 1130 (1238)
T KOG1127|consen 1122 DADAHGSSA 1130 (1238)
T ss_pred hhhhhhhHH
Confidence 776655443
No 40
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=2.6e-24 Score=216.61 Aligned_cols=306 Identities=18% Similarity=0.145 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc----HHHHHHHH
Q psy6603 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN----IQIMRDLS 103 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~la 103 (724)
....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34667778899999999999999999999999999999999999999999999999999988753322 24678889
Q ss_pred HHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH
Q psy6603 104 LLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD 183 (724)
Q Consensus 104 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 183 (724)
.++...|++++|...|+++++..|.+..++..++.++...|++++|+..++.+.+..+..+. ......+..+|.++..
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR--VEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHHHh
Confidence 99999999999999999999988888889999999999999999999988887765432221 1233456678888888
Q ss_pred cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHH
Q psy6603 184 SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTH 263 (724)
Q Consensus 184 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~ 263 (724)
.|++++|+..|+++++..|++..++..+|.++...|++++|+..+++++..+|.+...
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---------------------- 250 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE---------------------- 250 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH----------------------
Confidence 8999999999999988888888888888999999999999998888888776643210
Q ss_pred HHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6603 264 YISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQ 343 (724)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 343 (724)
T Consensus 251 -------------------------------------------------------------------------------- 250 (389)
T PRK11788 251 -------------------------------------------------------------------------------- 250 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccch
Q psy6603 344 DEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADR 423 (724)
Q Consensus 344 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 423 (724)
++..++.+|...|++++|+..++++++..|+... +..++.++...|++++|+..++++++..|++.
T Consensus 251 -------------~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 251 -------------VLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 2224556666777777777777777777776543 36777777777777777777777777777766
Q ss_pred hhhhhHHHHHHH--cCCHHHHHHHHHHhhh
Q psy6603 424 YINSKCAKYMLR--ANLIKEAEETCSKFTR 451 (724)
Q Consensus 424 ~~~~~~~~~~~~--~g~~~~A~~~~~~~~~ 451 (724)
.+...+...+.. .|+..+++..++++++
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 444333332221 3467777777766664
No 41
>KOG1126|consensus
Probab=99.94 E-value=2.6e-25 Score=212.82 Aligned_cols=305 Identities=16% Similarity=0.091 Sum_probs=196.5
Q ss_pred HHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy6603 30 TLAMKGLTLNCL--GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 107 (724)
Q Consensus 30 ~~~~~a~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 107 (724)
.+..+|..+... -+..+|+..|.+.-...++...+...+|..|+.+++|++|..+|+.+-+..|-..+..-....++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 334444443333 344566666666555556666666666777777777777777777766666655554444445555
Q ss_pred HhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCH
Q psy6603 108 QMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL 187 (724)
Q Consensus 108 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 187 (724)
.+.+--+--.+.+..+..+|+.|+.|..+|.+|..+++++.|++.|++++.. +|. ..-++..+|.-+....++
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---dp~----faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL---DPR----FAYAYTLLGHESIATEEF 471 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc---CCc----cchhhhhcCChhhhhHHH
Confidence 5544444444445555666666666666666666666666666665554333 233 444555556666666666
Q ss_pred HHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q psy6603 188 EEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISK 267 (724)
Q Consensus 188 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 267 (724)
+.|..+|+.++..+|.+..+|+.+|.+|.++++++.|.-.|+++++++|.+....
T Consensus 472 d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~------------------------- 526 (638)
T KOG1126|consen 472 DKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL------------------------- 526 (638)
T ss_pred HhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH-------------------------
Confidence 6666666666666666666666666666666666666666666666666444322
Q ss_pred CCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q psy6603 268 YPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGE 347 (724)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 347 (724)
T Consensus 527 -------------------------------------------------------------------------------- 526 (638)
T KOG1126|consen 527 -------------------------------------------------------------------------------- 526 (638)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhh
Q psy6603 348 VEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINS 427 (724)
Q Consensus 348 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 427 (724)
..+|.++.+.|+.++|+.++++|+.++|.++-..+..|.++...+++++|+..+++..++-|++..++.
T Consensus 527 -----------~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~ 595 (638)
T KOG1126|consen 527 -----------CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFA 595 (638)
T ss_pred -----------hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHH
Confidence 255666667777777888888887777777777777787777778888888888777777777777777
Q ss_pred hHHHHHHHcCCHHHHHHHHHHhhhcccCcc
Q psy6603 428 KCAKYMLRANLIKEAEETCSKFTREGVSAM 457 (724)
Q Consensus 428 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 457 (724)
.+|.++.+.|+.+.|+..|.-+...+|...
T Consensus 596 llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 596 LLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 777888777887778777777777666643
No 42
>KOG0548|consensus
Probab=99.94 E-value=1.2e-23 Score=196.38 Aligned_cols=252 Identities=14% Similarity=0.046 Sum_probs=188.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhh-------hHH
Q psy6603 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINS-------KCA 430 (724)
Q Consensus 358 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-------~~~ 430 (724)
.-.+|.......++..|++.+..+++++ .+...+...+.+++..|.+.+.+....++++.......-+. .+|
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 3477888888899999999999999999 88888899999999999999999888888776544322221 233
Q ss_pred HHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHH
Q psy6603 431 KYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAK 510 (724)
Q Consensus 431 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~ 510 (724)
..+.+.++++.|+..|.+++..... ..+..++ +..+++++..+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt-----------------~~~ls~l--------------------k~~Ek~~k~~e 348 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRT-----------------PDLLSKL--------------------KEAEKALKEAE 348 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcC-----------------HHHHHHH--------------------HHHHHHHHHHH
Confidence 4455555666666666665542221 1222222 33444444443
Q ss_pred HHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccH
Q psy6603 511 QILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 511 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 590 (724)
...- -.|..+.--...|..+++.|++..|+..|.++|+.+|+++..|.+.|.+|.++|.+..|++..+++++++|+..
T Consensus 349 ~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~ 426 (539)
T KOG0548|consen 349 RKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFI 426 (539)
T ss_pred HHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHH
Confidence 3222 23444556677799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHH
Q psy6603 591 QIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHE 650 (724)
Q Consensus 591 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 650 (724)
.++..-|.++..+.+|+.|.++|...++.+|...... ..+..|...+.......++.++
T Consensus 427 kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~-~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 427 KAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI-DGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH-HHHHHHHHHhhcCCCHHHHHHh
Confidence 9999999999999999999999999999998773332 2344455554334444455544
No 43
>KOG0624|consensus
Probab=99.94 E-value=2e-23 Score=182.76 Aligned_cols=221 Identities=13% Similarity=0.109 Sum_probs=184.2
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 102 (724)
.+|.+.+-.+.+|..++..|++.+|+..|..+++.+|++..+++..|.+|..+|+-.-|+..+.+++++.|+...+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45677888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCchhHH---HHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLRPTQRASW---IGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM 179 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 179 (724)
|.+++++|.+++|...|+.++..+|++.... ..++.+ + ....+.....
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~--------------~---------------e~~~l~~ql~ 163 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI--------------Q---------------EHWVLVQQLK 163 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH--------------H---------------HHHHHHHHHH
Confidence 9999999999999999999999998754332 111110 0 1112223344
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHH
Q psy6603 180 VIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIF 258 (724)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~ 258 (724)
.+...|+...|++.....++..|-+...+...+.||...|++..|+..++.+-++..++.+.++.+..+ +..|+.+.++
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 566678999999999999999999999999999999999999999999999999988888888888888 6789999999
Q ss_pred HHHHHHHHhCCCCC
Q psy6603 259 QLLTHYISKYPKAT 272 (724)
Q Consensus 259 ~~~~~~~~~~~~~~ 272 (724)
...++.++.+|+..
T Consensus 244 ~~iRECLKldpdHK 257 (504)
T KOG0624|consen 244 KEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHHHccCcchh
Confidence 99999999988874
No 44
>KOG1126|consensus
Probab=99.94 E-value=3.6e-25 Score=211.89 Aligned_cols=293 Identities=16% Similarity=0.095 Sum_probs=254.7
Q ss_pred chhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHH
Q psy6603 7 QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYR 86 (724)
Q Consensus 7 ~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 86 (724)
+.++|+..|.++-. ..++..-++..+|..|+.+++|++|..+|+.+-+..|-.....-.+..+++...+--+---.-+
T Consensus 334 ~~~~A~~~~~klp~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 56789999999655 5667778999999999999999999999999999999877666666777777666665556667
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCC
Q psy6603 87 NALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSY 166 (724)
Q Consensus 87 ~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 166 (724)
..+..+|+.|+.|..+|.|+.-+++.+.|+++|+++++++|...-++..+|.-+.....++.|...|..++... |
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~---~-- 486 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD---P-- 486 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC---c--
Confidence 78889999999999999999999999999999999999999999999999999999999999999988866654 4
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy6603 167 DFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLV 246 (724)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 246 (724)
.+..+|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+.++|+..|++|+.++|.++...+
T Consensus 487 --rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~--- 561 (638)
T KOG1126|consen 487 --RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY--- 561 (638)
T ss_pred --hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH---
Confidence 488899999999999999999999999999999999999999999999999999999999999999998775433
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHH
Q psy6603 247 EAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDL 326 (724)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 326 (724)
T Consensus 562 -------------------------------------------------------------------------------- 561 (638)
T KOG1126|consen 562 -------------------------------------------------------------------------------- 561 (638)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHH
Q psy6603 327 VESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVL 406 (724)
Q Consensus 327 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 406 (724)
..|.++...+++++|+..+++.-+..|+...+++.+|.+|.+.|+.+
T Consensus 562 ---------------------------------~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 562 ---------------------------------HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred ---------------------------------HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 33444555678888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHccCccchh
Q psy6603 407 EAYKWLDEAQSLDTADRY 424 (724)
Q Consensus 407 ~A~~~~~~a~~~~~~~~~ 424 (724)
.|+..|.-|..++|.-..
T Consensus 609 ~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 609 LALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhHHHhcCCCccch
Confidence 888888888888886443
No 45
>KOG1155|consensus
Probab=99.94 E-value=8.2e-23 Score=186.42 Aligned_cols=375 Identities=15% Similarity=0.112 Sum_probs=293.0
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC--CchhHHHHHH
Q psy6603 60 KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRP--TQRASWIGFA 137 (724)
Q Consensus 60 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la 137 (724)
.++..++..|.++...|....|+..|..++...|-+-.+|..|+.+.... +........-| .+...-+.++
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHHHHHHH
Confidence 45666888899999999999999999999999999999999998876432 22223332334 3444556678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHH
Q psy6603 138 MAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLK 217 (724)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 217 (724)
.++....+.++++.-.+...... -| ...-.-...|.+.....++++|+..|+.+.+.+|-...-......++.-
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~g--f~----~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVG--FP----NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--CC----ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 88888889999987777666552 12 2344566778899999999999999999999999887777777777776
Q ss_pred cCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhcc-CChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHH
Q psy6603 218 LGQYNEAMKHYESLIERNQENTLYYNKLVEAKQL-TNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLR 296 (724)
Q Consensus 218 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (724)
..+-.+-.-.-+.+..++.--++....+|..+.. ++.++|+.+|+++++.+|..
T Consensus 309 ~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~------------------------- 363 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY------------------------- 363 (559)
T ss_pred HhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch-------------------------
Confidence 6665554455566666666666666666666553 67778888887777776665
Q ss_pred hhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHH
Q psy6603 297 HGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALN 376 (724)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 376 (724)
..+| ..+|.-|..+.+...|+.
T Consensus 364 --------------------------------------------------------~~aW--TLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 364 --------------------------------------------------------LSAW--TLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred --------------------------------------------------------hHHH--HHhhHHHHHhcccHHHHH
Confidence 2233 478999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCc
Q psy6603 377 YINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSA 456 (724)
Q Consensus 377 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 456 (724)
.|+++++++|.+-.+|+.+|..|.-++-+.=|+-+|+++.++.|+|+.++..+|.+|.+.++.++|+..|.+++..+.
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-- 463 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-- 463 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875221
Q ss_pred cCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcC
Q psy6603 457 MENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLG 536 (724)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 536 (724)
.+..++..+|.+|.+++
T Consensus 464 ---------------------------------------------------------------te~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 464 ---------------------------------------------------------------TEGSALVRLAKLYEELK 480 (559)
T ss_pred ---------------------------------------------------------------cchHHHHHHHHHHHHHH
Confidence 12347788888888888
Q ss_pred ChHHHHHHHHHhhh-------cCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHH
Q psy6603 537 RKEEAYEYVRRGLR-------NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 595 (724)
Q Consensus 537 ~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 595 (724)
+..+|..+|++.++ .+|....+...|+.-+.+.+++++|-.+..+++..++...++...
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~L 546 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKAL 546 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHH
Confidence 88888888888877 345455566668888888888888888888888876655554433
No 46
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.9e-23 Score=210.36 Aligned_cols=305 Identities=13% Similarity=0.051 Sum_probs=202.5
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q psy6603 100 RDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM 179 (724)
Q Consensus 100 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 179 (724)
+.+|..+...|++++|+..|.++++.+|+++.++..+|.++...|++++|+..++.+.... +.........+..+|.
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP---DLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555566666666666666665555544321 1101123356778888
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHH
Q psy6603 180 VIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQ 259 (724)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~ 259 (724)
++...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++..|.+...
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------ 177 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV------------------ 177 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH------------------
Confidence 99999999999999999998888888899999999999999999999999888766533210
Q ss_pred HHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCC
Q psy6603 260 LLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGH 339 (724)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 339 (724)
T Consensus 178 -------------------------------------------------------------------------------- 177 (389)
T PRK11788 178 -------------------------------------------------------------------------------- 177 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy6603 340 FSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLD 419 (724)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 419 (724)
.....+..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++..+
T Consensus 178 -------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 178 -------------EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred -------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 0011234677888889999999999999999999999999999999999999999999999999877
Q ss_pred ccc-hhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhh
Q psy6603 420 TAD-RYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYE 498 (724)
Q Consensus 420 ~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 498 (724)
|.+ ...+..++.++...|++++|...+++++...
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--------------------------------------------- 279 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--------------------------------------------- 279 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------------
Confidence 764 2334445555555555555555555544311
Q ss_pred hhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhc--cccHHHHH
Q psy6603 499 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS--DKKYDEAI 576 (724)
Q Consensus 499 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~~~~~~A~ 576 (724)
|+. ..+..+|.++.+.|++++|+..++++++.+|++......++..... .|+..+|+
T Consensus 280 --------------------p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 280 --------------------PGA-DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred --------------------CCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHH
Confidence 111 1235566666666677777777776666666665444333333221 34566666
Q ss_pred HHHHHHhh
Q psy6603 577 KCYRNALK 584 (724)
Q Consensus 577 ~~~~~al~ 584 (724)
..+++.++
T Consensus 339 ~~~~~~~~ 346 (389)
T PRK11788 339 LLLRDLVG 346 (389)
T ss_pred HHHHHHHH
Confidence 66655553
No 47
>KOG0624|consensus
Probab=99.94 E-value=2.6e-22 Score=175.79 Aligned_cols=346 Identities=14% Similarity=0.131 Sum_probs=282.9
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy6603 168 FEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVE 247 (724)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 247 (724)
+...+-.+.+|..+...|++..|+..|..+++.+|++..+++..|.+|..+|+-.-|+..+.+++++.|+...+....+.
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 34677788899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred H-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHH
Q psy6603 248 A-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDL 326 (724)
Q Consensus 248 ~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 326 (724)
+ +++|.++.|..-|..++...|...... ++
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~-------------------------------------------------ea 145 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVL-------------------------------------------------EA 145 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhH-------------------------------------------------HH
Confidence 8 789999999999999999988763310 00
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHH
Q psy6603 327 VESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVL 406 (724)
Q Consensus 327 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~ 406 (724)
.... ......|.+......+...|+...|+..+...+++.|-++..+...+.||...|++.
T Consensus 146 qskl-------------------~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 146 QSKL-------------------ALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred HHHH-------------------HhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHH
Confidence 0000 001112233344555666899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhh
Q psy6603 407 EAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTL 486 (724)
Q Consensus 407 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 486 (724)
.|+..++.+-++..++....+.++..+...|+.+.++...+..++.+|.... |+ -.|.++.+..+.+
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~------Cf-------~~YKklkKv~K~l 273 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL------CF-------PFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh------HH-------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876432 11 1223333333333
Q ss_pred hhhhhhhhHhhhhhchHHHHHHHHHHhc-CCC-CCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHH
Q psy6603 487 KKCHEVDRKCYEHKQYKNGLKFAKQILT-NPK-YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGL 564 (724)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 564 (724)
...+ ...+.+.|.++++..+.+.. +|. .+-.......+..|+...|++.+|+....++++.+|++..++...+.
T Consensus 274 es~e----~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 274 ESAE----QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHH----HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 3222 23445778888888888544 443 22234456677888899999999999999999999999999999999
Q ss_pred HHhccccHHHHHHHHHHHhhhccccHHHHHHHHH
Q psy6603 565 LQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 598 (724)
Q Consensus 565 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 598 (724)
+|.-...|+.|+..|++|.+.+|++..+.-.+-.
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 9999999999999999999999999887766543
No 48
>KOG1173|consensus
Probab=99.93 E-value=7.9e-22 Score=184.92 Aligned_cols=464 Identities=13% Similarity=0.044 Sum_probs=327.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 111 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 111 (724)
..+-.-...+.+|.-|+-+-+++..+. .++.-.+.+|.+++-.|+++.|......- .+...+....+..+.++....+
T Consensus 20 ~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 20 RRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHH
Confidence 333345566778999999999988776 56666778899999999999888776654 5667788889999999999999
Q ss_pred hHHHHHHHHHH------HHhCCCc-------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCC
Q psy6603 112 LEGYRETRYQL------FMLRPTQ-------------------RASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSY 166 (724)
Q Consensus 112 ~~~A~~~~~~~------l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 166 (724)
+++|..++... +..+|.+ ....+..|.+|....+.++|...|..++....
T Consensus 98 ~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~----- 172 (611)
T KOG1173|consen 98 WDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA----- 172 (611)
T ss_pred HHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch-----
Confidence 99999887622 1112221 12344567777888888888887777654431
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----hhccHhhHHHHHHHHHHHcCChHHHHHHHH-HHHHHcCCcHH
Q psy6603 167 DFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKE-----QIHDKLTVEETYGALKLKLGQYNEAMKHYE-SLIERNQENTL 240 (724)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~p~~~~ 240 (724)
...++...+.....- .+-+.+..... ....+......+-.+......-+++...-. ..+..-.++.+
T Consensus 173 --~c~Ea~~~lvs~~ml-----t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~d 245 (611)
T KOG1173|consen 173 --KCFEAFEKLVSAHML-----TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLD 245 (611)
T ss_pred --hhHHHHHHHHHHHhc-----chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHH
Confidence 122222222111111 11111111111 011111111111111100000011111000 11112233445
Q ss_pred HHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhh
Q psy6603 241 YYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEK 319 (724)
Q Consensus 241 ~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (724)
.....+.. +..+++.+..++.+..++.+|-....
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~--------------------------------------------- 280 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC--------------------------------------------- 280 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch---------------------------------------------
Confidence 55555544 78899999999999999999987432
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q psy6603 320 CKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIY 399 (724)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 399 (724)
.-..+| ++...|+..+-..+-.+.++..|+.+..|+..|.-|
T Consensus 281 -------------------------------------~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 281 -------------------------------------LPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred -------------------------------------HHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 122445 556667777777777788999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhh
Q psy6603 400 KHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRL 479 (724)
Q Consensus 400 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (724)
...|++.+|.++|.++..++|.-...|...|..+.-.|..++|+..|..+.+.-+..-. + .++ +|.-|.+.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl--P-----~LY--lgmey~~t 393 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL--P-----SLY--LGMEYMRT 393 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc--h-----HHH--HHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999885543221 1 111 68888888
Q ss_pred cchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc----CCCc
Q psy6603 480 GRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN----DLKS 555 (724)
Q Consensus 480 g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~ 555 (724)
++++-|.+.|.++ +... |.++-++..+|.+.+..+.+.+|..+|++++.. .+..
T Consensus 394 ~n~kLAe~Ff~~A-------------------~ai~---P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 394 NNLKLAEKFFKQA-------------------LAIA---PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred ccHHHHHHHHHHH-------------------HhcC---CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 8887777776644 4444 466669999999999999999999999999843 2222
Q ss_pred ---cchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh
Q psy6603 556 ---HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ 623 (724)
Q Consensus 556 ---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 623 (724)
...+.++|.++.+++++++|+.+|+++|.+.|.++.++..+|.++..+|+++.|++.|...+-+.|+.
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 23789999999999999999999999999999999999999999999999999999999988888776
No 49
>KOG1915|consensus
Probab=99.92 E-value=2.3e-19 Score=164.42 Aligned_cols=494 Identities=14% Similarity=0.132 Sum_probs=319.8
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Q psy6603 49 EYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128 (724)
Q Consensus 49 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 128 (724)
+-|+..++.+.-+...|...|.--..++++..|...|++|+..+..+...|...+.+-++......|..++++++..-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 44555666666667778888888888888888888898888888888888888888888888888888888888888888
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHH
Q psy6603 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVE 208 (724)
Q Consensus 129 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 208 (724)
-...|+.....-..+|+...|.++|++..+.. | ...+|......-.+.+..+.|...|++.+-..| ....|
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~---P-----~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~w 210 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWE---P-----DEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNW 210 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCC---C-----cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHH
Confidence 88888888888888888888888888865543 4 346777777777778888888888888887776 46677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHcCCcHH---HHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCc
Q psy6603 209 ETYGALKLKLGQYNEAMKHYESLIERNQENTL---YYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSG 284 (724)
Q Consensus 209 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (724)
...+..-.+.|+..-|...|+++++.-.++.. .+...+.. -.+..++.|.-+|+-++...|.+...
T Consensus 211 ikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~rae---------- 280 (677)
T KOG1915|consen 211 IKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAE---------- 280 (677)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH----------
Confidence 88888888889888899999888887655543 33334444 34577888888888888888876321
Q ss_pred hhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHH-----HHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHH
Q psy6603 285 DQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQ-----DLVESYVEALSKTGHFSLQDEGEVEPASALLWVYH 359 (724)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (724)
+....| ...-.+-|+..-++ +---.|+..+ ..+|.+...|.
T Consensus 281 ----eL~k~~----------------~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v------------~~np~nYDsWf-- 326 (677)
T KOG1915|consen 281 ----ELYKKY----------------TAFEKQFGDKEGIEDAIVGKRKFQYEKEV------------SKNPYNYDSWF-- 326 (677)
T ss_pred ----HHHHHH----------------HHHHHHhcchhhhHHHHhhhhhhHHHHHH------------HhCCCCchHHH--
Confidence 000000 00001111110111 1111233333 23333333332
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChHH---------HHHHHHHH-HHHcCCHHHHHHHHHHHHccCccch----hh
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAIDHTPTLIE---------LFVTKGRI-YKHAGDVLEAYKWLDEAQSLDTADR----YI 425 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~l~~~-~~~~g~~~~A~~~~~~a~~~~~~~~----~~ 425 (724)
..-.+-...|+.+.-.+.|++++...|...+ .|.+.+.. -....+.+.+.+.|+.++++-|... .+
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKi 406 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKI 406 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHH
Confidence 2223333445555555555555555443211 11111110 1223455555555555555555432 23
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHH
Q psy6603 426 NSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNG 505 (724)
Q Consensus 426 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A 505 (724)
+...+....+..+...|.+++..++...|..
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG~cPK~------------------------------------------------- 437 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIGKCPKD------------------------------------------------- 437 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhccCCch-------------------------------------------------
Confidence 3334444445555555555555444333321
Q ss_pred HHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhh
Q psy6603 506 LKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW 585 (724)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 585 (724)
..+-....+-.++++++....+|++.++.+|.+..+|...|.+-..+|+.+.|...|+-|++.
T Consensus 438 -----------------KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 438 -----------------KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred -----------------hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 133344455567788888888888888888888888888888888888888888888888875
Q ss_pred ccccH--HHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhH---HHHHHHhC-----------ChhHHHHHHH
Q psy6603 586 EHDNI--QIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTEC---ALAYQRLG-----------RWGDTLKKCH 649 (724)
Q Consensus 586 ~p~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---a~~~~~~g-----------~~~~A~~~~~ 649 (724)
..-+. -++......-...|.++.++..|+.++...+....|+.++. +......| +...|.++|+
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~ife 580 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFE 580 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHH
Confidence 43222 34444555566778888888888888888888888854222 11222444 6778889999
Q ss_pred HHHHHHhhhhcc
Q psy6603 650 EVDRHFSEIIED 661 (724)
Q Consensus 650 ~~~~~~~~~~~~ 661 (724)
++...+.+..+.
T Consensus 581 rAn~~~k~~~~K 592 (677)
T KOG1915|consen 581 RANTYLKESTPK 592 (677)
T ss_pred HHHHHHHhcCcH
Confidence 888888776653
No 50
>KOG4162|consensus
Probab=99.92 E-value=7.4e-21 Score=185.11 Aligned_cols=445 Identities=14% Similarity=0.127 Sum_probs=292.8
Q ss_pred CCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhC--CCcHHHHHH
Q psy6603 24 YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE--HDNIQIMRD 101 (724)
Q Consensus 24 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~ 101 (724)
..+++.++-.+...+...|+++.+.+.|++++...-.....|+.++.++...|.-..|+...++.+... |.++..+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 446778888899999999999999999999998888888899999999999999999999999999988 777776666
Q ss_pred HHH-HHHHhcchHHHHHHHHHHHHhCCC-----chhHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhhccCC
Q psy6603 102 LSL-LQIQMRDLEGYRETRYQLFMLRPT-----QRASWIGFAMAYHLL-----------HDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 102 la~-~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~~~~~~~p 164 (724)
.+. |..+.+.+++++.+..+++...-. .+..+..+|.+|..+ -...++++.++++.+..+.+|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 555 455789999999999999984321 345667777776543 224567777777666654444
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-hccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHH
Q psy6603 165 SYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQ-IHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYN 243 (724)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 243 (724)
.+.++++.-|...++.+.|....+++++. ..+++.+|..++.++...+++.+|+...+.+++..|+|.....
T Consensus 479 -------~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 479 -------LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred -------hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 58889999999999999999999999999 4566889999999999999999999999999999888776655
Q ss_pred HHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhh--hhcCCchhhhhhHHhhhchhhH
Q psy6603 244 KLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHG--FHKGVPPLFVNLRSLYSNTEKC 320 (724)
Q Consensus 244 ~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 320 (724)
....+ +..++.++++..+...+.............- .+... ....-+... ...+.++....+..+.....+.
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~----~g~~~-~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD----EGKLL-RLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh----hhhhh-hhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 55555 5678899999888887776553221100000 00000 000000000 0011111111111111100000
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q psy6603 321 KIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYK 400 (724)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 400 (724)
..+...+ +.+.. ...+..+.......+...+..+...+..++|..++.++-.++|..+..|+..|.++.
T Consensus 627 -------~~se~~L---p~s~~-~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 627 -------AGSELKL---PSSTV-LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLE 695 (799)
T ss_pred -------ccccccc---Ccccc-cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHH
Confidence 0000000 00000 000111111122233455666666667777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhc
Q psy6603 401 HAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLG 480 (724)
Q Consensus 401 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 480 (724)
..|+..+|...|..++.++|+++.+...+|.++...|
T Consensus 696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G------------------------------------------- 732 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG------------------------------------------- 732 (799)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-------------------------------------------
Confidence 7777777777777777777766655555555555444
Q ss_pred chhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHH--HHHHhhhcCCCccch
Q psy6603 481 RWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYE--YVRRGLRNDLKSHVC 558 (724)
Q Consensus 481 ~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~ 558 (724)
+..-|.. .+..+++++|.++.+
T Consensus 733 --------------------------------------------------------~~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 733 --------------------------------------------------------SPRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred --------------------------------------------------------CcchHHHHHHHHHHHhhCCCCHHH
Confidence 3333333 666677777777777
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhhhccccH
Q psy6603 559 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 590 (724)
|+.+|.++.+.|+.++|.++|..++++.+.+|
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 77777777777777777777777777776665
No 51
>KOG4162|consensus
Probab=99.90 E-value=7.8e-20 Score=178.11 Aligned_cols=462 Identities=12% Similarity=-0.011 Sum_probs=316.1
Q ss_pred HhccCCHHHHHHHHHHHHH-----cCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcch
Q psy6603 38 LNCLGRKEEAYEYVRRGLR-----NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDL 112 (724)
Q Consensus 38 ~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~ 112 (724)
+.-..+.++++-..-..+. .-.+++.+|-.+.......|+++.+.+.|++++...-...+.|+.++.++...|.-
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~ 373 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSD 373 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccc
Confidence 3344445555444433332 12356677888888999999999999999999988888889999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcC----
Q psy6603 113 EGYRETRYQLFMLR--PTQRASWIGFAMA-YHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSG---- 185 (724)
Q Consensus 113 ~~A~~~~~~~l~~~--p~~~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g---- 185 (724)
..|+...+..+... |+++..+...+.+ ..+.+..++++.+..+++....... ....+..+..+|.+|..+-
T Consensus 374 s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~--~~l~~~~~l~lGi~y~~~A~~a~ 451 (799)
T KOG4162|consen 374 SKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQR--SHLKPRGYLFLGIAYGFQARQAN 451 (799)
T ss_pred hHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhHhhcCC
Confidence 99999999999988 7777766665554 4567899999998888877542221 2335667778888776532
Q ss_pred -------CHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcC-CcHHHHHHHHHHhc-cCChHH
Q psy6603 186 -------DLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQ-ENTLYYNKLVEAKQ-LTNNDD 256 (724)
Q Consensus 186 -------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~-~~~~~~ 256 (724)
...++++.++++++.+|.|+.+.+.++.-|..+++.+.|....+++++.++ +++..|..++.++. .+++.+
T Consensus 452 ~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 346889999999999999999999999999999999999999999999955 56788999998864 689999
Q ss_pred HHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhh
Q psy6603 257 IFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSK 336 (724)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 336 (724)
|+.+.+.++..+|++.......
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~---------------------------------------------------------- 553 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGK---------------------------------------------------------- 553 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhh----------------------------------------------------------
Confidence 9999999988888764321000
Q ss_pred cCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHH---------HHHHHHHHHcCCHHH
Q psy6603 337 TGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELF---------VTKGRIYKHAGDVLE 407 (724)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---------~~l~~~~~~~g~~~~ 407 (724)
..+-...++.++|+..+...+..-.....+- ...+.+....++..+
T Consensus 554 -------------------------~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 554 -------------------------IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTD 608 (799)
T ss_pred -------------------------hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccc
Confidence 0000113444444444444443322211111 111122222223333
Q ss_pred HHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhh
Q psy6603 408 AYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLK 487 (724)
Q Consensus 408 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 487 (724)
|++..+++..+ +..-.+.-..+.. +.+.. ..|.+.........+|.. .+..+...+..++|..
T Consensus 609 a~s~sr~ls~l-----------~a~~~~~~~se~~---Lp~s~-~~~~~~~~~~~~~~lwll--aa~~~~~~~~~~~a~~ 671 (799)
T KOG4162|consen 609 AISTSRYLSSL-----------VASQLKSAGSELK---LPSST-VLPGPDSLWYLLQKLWLL--AADLFLLSGNDDEARS 671 (799)
T ss_pred cchhhHHHHHH-----------HHhhhhhcccccc---cCccc-ccCCCCchHHHHHHHHHH--HHHHHHhcCCchHHHH
Confidence 33333222221 0011100011111 00000 011111111222345544 6777777777777765
Q ss_pred hhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHh
Q psy6603 488 KCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567 (724)
Q Consensus 488 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 567 (724)
++.++ - . .+|..+..|+..|.++...|+.++|.+.|..++.++|+++.+...+|.++.
T Consensus 672 CL~Ea-------------------~-~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 672 CLLEA-------------------S-K--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHH-------------------H-h--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 54433 1 1 335667789999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHH--HHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh
Q psy6603 568 SDKKYDEAIK--CYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ 623 (724)
Q Consensus 568 ~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 623 (724)
..|+..-|.. .+..+++++|.++++|+.+|.+..+.|+.+.|.+.|.....+.++.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 9998877777 9999999999999999999999999999999999988887777655
No 52
>KOG1915|consensus
Probab=99.90 E-value=1.4e-17 Score=152.87 Aligned_cols=472 Identities=14% Similarity=0.142 Sum_probs=336.2
Q ss_pred HHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q psy6603 13 KFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE 92 (724)
Q Consensus 13 ~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 92 (724)
+.|+..+. .+.-+...|...|.--..++++..|..+|++++..+..+...|...+.+-++.+....|...+.+|+.+-
T Consensus 60 kefEd~ir--rnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 60 KEFEDQIR--RNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 34555555 4556677888888888888999999999999999998889999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHH
Q psy6603 93 HDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSE 172 (724)
Q Consensus 93 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~ 172 (724)
|.-...|+....+-..+|+...|.++|++-++..|+. .+|......-.+.+..+.|..+|++++-.. | ...
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~H---P-----~v~ 208 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVH---P-----KVS 208 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheec---c-----cHH
Confidence 9988888888888888999999999999999988864 678888888888889999999988877655 3 456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHh---hHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCc--HHHHHHHHH
Q psy6603 173 LLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKL---TVEETYGALKLKLGQYNEAMKHYESLIERNQEN--TLYYNKLVE 247 (724)
Q Consensus 173 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~ 247 (724)
.|...+..-.+.|+..-|..+|+++++...++. ......|..-..+..++.|...|+-+++.-|.+ ...+..+..
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 778888888889999999999999888765543 345566666677788899999999999988887 344544444
Q ss_pred H-hccCCh---HHHH-----HHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchh
Q psy6603 248 A-KQLTNN---DDIF-----QLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTE 318 (724)
Q Consensus 248 ~-~~~~~~---~~a~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (724)
. -+-|+. ++++ -.|+..+..+|.+-.... ....+....|
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWf--------------------------------dylrL~e~~g 336 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWF--------------------------------DYLRLEESVG 336 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHH--------------------------------HHHHHHHhcC
Confidence 4 223442 3333 356677777877643221 1111222222
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHH
Q psy6603 319 KCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPT----LIELFVT 394 (724)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~ 394 (724)
......+.|++++...+...+ ...-.....+|+.|.+-. -....+.+.+.++|+.++++-|. .+..|..
T Consensus 337 ---~~~~Ire~yErAIanvpp~~e---kr~W~RYIYLWinYalye-Ele~ed~ertr~vyq~~l~lIPHkkFtFaKiWlm 409 (677)
T KOG1915|consen 337 ---DKDRIRETYERAIANVPPASE---KRYWRRYIYLWINYALYE-ELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLM 409 (677)
T ss_pred ---CHHHHHHHHHHHHccCCchhH---HHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 244555667777743221000 000001122233222211 12468999999999999999985 6778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHH
Q psy6603 395 KGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECAL 474 (724)
Q Consensus 395 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (724)
.|....++.+...|.+.+-.++-.-|.+.. ......+-++.++++....+|++.++-
T Consensus 410 yA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelElqL~efDRcRkLYEkfle~---------------------- 466 (677)
T KOG1915|consen 410 YAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELELQLREFDRCRKLYEKFLEF---------------------- 466 (677)
T ss_pred HHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHHHHHhhHHHHHHHHHHHHhc----------------------
Confidence 999999999999999999999999998653 234455566667777777777776653
Q ss_pred HHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCC
Q psy6603 475 AYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK 554 (724)
Q Consensus 475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 554 (724)
+|.+..+|...|..-..+|+.+.|..+|+-|++...-
T Consensus 467 -------------------------------------------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l 503 (677)
T KOG1915|consen 467 -------------------------------------------SPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL 503 (677)
T ss_pred -------------------------------------------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc
Confidence 3455557777777777788888888888877775433
Q ss_pred ccc--hHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Q psy6603 555 SHV--CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 601 (724)
Q Consensus 555 ~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 601 (724)
+.. .|-.....-...|.++.|...|++.|+..+... ++...|....
T Consensus 504 dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 504 DMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 333 455555666677888888888888888776555 6666665444
No 53
>KOG1156|consensus
Probab=99.89 E-value=2.3e-18 Score=164.52 Aligned_cols=416 Identities=13% Similarity=0.116 Sum_probs=263.8
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 104 (724)
|.....++..+.-.+..++|...++..+.+++..|++++.....|..+..+|+-++|..+...++..++.+...|..+|.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGL 83 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHH
Confidence 34456788888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc
Q psy6603 105 LQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS 184 (724)
Q Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 184 (724)
++....+|++|+++|+.++.++|+|...|..++.+..++++++.....-....+.. |. ....|+..+..+.-.
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---~~----~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---PS----QRASWIGFAVAQHLL 156 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh---hh----hHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888887765544433332 33 555666677777777
Q ss_pred CCHHHHHHHHHHHhhhh---ccH-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHH
Q psy6603 185 GDLEEAVKHLDRFKEQI---HDK-----LTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDD 256 (724)
Q Consensus 185 g~~~~A~~~~~~~~~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 256 (724)
|++..|...++...+.. |+. .........+..+.|.+++|.+.+..- .|
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~---e~-------------------- 213 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN---EK-------------------- 213 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh---hh--------------------
Confidence 77777777766655543 221 112222333333344433333222110 00
Q ss_pred HHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhh
Q psy6603 257 IFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSK 336 (724)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 336 (724)
..++.+
T Consensus 214 --------------------------------------------------------------------~i~Dkl------ 219 (700)
T KOG1156|consen 214 --------------------------------------------------------------------QIVDKL------ 219 (700)
T ss_pred --------------------------------------------------------------------HHHHHH------
Confidence 000000
Q ss_pred cCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q psy6603 337 TGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAY-KWLDEA 415 (724)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a 415 (724)
......+.++.+.+++++|...+...+..+|++...+..+-.++..-.+.-+++ ..|...
T Consensus 220 -------------------a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 220 -------------------AFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred -------------------HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 011255777888999999999999999999999988888888876333444454 566665
Q ss_pred HccCccchhhhhhHHHHHHHcCCHHHHH-HHHHHhhhcccCc-cCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh
Q psy6603 416 QSLDTADRYINSKCAKYMLRANLIKEAE-ETCSKFTREGVSA-MENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVD 493 (724)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 493 (724)
-+..|..... ..+......-.++.+.. .++...++.+.+. ..++. ..|.. .+-....+++.
T Consensus 281 s~~y~r~e~p-~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~------------SLyk~----p~k~~~le~Lv 343 (700)
T KOG1156|consen 281 SEKYPRHECP-RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR------------SLYKD----PEKVAFLEKLV 343 (700)
T ss_pred hhcCcccccc-hhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH------------HHHhc----hhHhHHHHHHH
Confidence 5555543221 12233333223333333 2333344332221 11110 10000 00000111110
Q ss_pred hHhhhhhchHHHHHHHHH-HhcC---------CCCCch--hHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHH
Q psy6603 494 RKCYEHKQYKNGLKFAKQ-ILTN---------PKYAEH--GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHV 561 (724)
Q Consensus 494 ~~~~~~~~~~~A~~~~~~-~~~~---------~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 561 (724)
..+.. +... ...|.. .-.++.++.-+...|+++.|..+++.|+...|+-++.+..
T Consensus 344 -------------t~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~ 410 (700)
T KOG1156|consen 344 -------------TSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLV 410 (700)
T ss_pred -------------HHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHH
Confidence 00000 1100 001121 2234556666666777777777777777777777777777
Q ss_pred HHHHHhccccHHHHHHHHHHHhhhccccHHHH
Q psy6603 562 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIM 593 (724)
Q Consensus 562 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 593 (724)
.|.++...|.+++|..++..+-+++-.|..+-
T Consensus 411 KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 411 KARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 77777777777777777777777665544333
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.89 E-value=1.2e-19 Score=180.76 Aligned_cols=209 Identities=9% Similarity=0.066 Sum_probs=170.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI-QIMRDLSLLQI 107 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~ 107 (724)
......|......|+++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. .+....+.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 44566788899999999999999999999998877888889999999999999999999999888875 56666799999
Q ss_pred HhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCH
Q psy6603 108 QMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL 187 (724)
Q Consensus 108 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 187 (724)
..|+++.|...++++.+..|+++.++..++.++...|++++|...+....+....+|. ................+..
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~---~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE---EFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877433222 1111222222222344555
Q ss_pred HHHHHHHHHHhhhhc----cHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHH
Q psy6603 188 EEAVKHLDRFKEQIH----DKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTL 240 (724)
Q Consensus 188 ~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 240 (724)
+++.+.+.++....| +++.++..++..+...|++++|...++++++..|++..
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~ 298 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA 298 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc
Confidence 555667777777666 47888999999999999999999999999999888764
No 55
>KOG1174|consensus
Probab=99.88 E-value=2.1e-18 Score=155.48 Aligned_cols=449 Identities=14% Similarity=0.018 Sum_probs=289.3
Q ss_pred HHHHHHHHHHHhcc----CCHHHHHHHHHHHHHc--------------------CCCchhHHHHHHHHHhhcCCHHHHHH
Q psy6603 28 GETLAMKGLTLNCL----GRKEEAYEYVRRGLRN--------------------DLKSHVCWHVYGLLQRSDKKYDEAIK 83 (724)
Q Consensus 28 ~~~~~~~a~~~~~~----g~~~~A~~~~~~~l~~--------------------~p~~~~~~~~lg~~~~~~g~~~~A~~ 83 (724)
++..+.++..++.. ..+..|...|..++.. .|.+.......+.+|...|+-+.|+.
T Consensus 39 ~~~~yqll~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~ 118 (564)
T KOG1174|consen 39 LDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIE 118 (564)
T ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHH
Confidence 34555555555444 4555566666665532 12233445666778888888888877
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q psy6603 84 CYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVT 163 (724)
Q Consensus 84 ~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 163 (724)
........ ...+.+-..++..+-.-++-.++.-.+..++...|--......+...-. .| .+.+- -........
T Consensus 119 ~l~~~p~t-~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v-~g-~e~~S----~~m~~~~~~ 191 (564)
T KOG1174|consen 119 TLLQVPPT-LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV-NG-NEINS----LVMHAATVP 191 (564)
T ss_pred HHhcCCcc-ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh-cc-hhhhh----hhhhheecC
Confidence 66554321 1234455555555555555545555555555554432222211111100 11 11110 011112222
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHH
Q psy6603 164 NSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYN 243 (724)
Q Consensus 164 p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 243 (724)
|. .++...-....+.++.....+.-+..++-.-....|++...+..+|.++...|++++|+..|+++...+|......-
T Consensus 192 ~~-~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 192 DH-FDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CC-ccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 22 11222222333445555555566666666777778999999999999999999999999999999999998887777
Q ss_pred HHHHHhc-cCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHH
Q psy6603 244 KLVEAKQ-LTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKI 322 (724)
Q Consensus 244 ~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (724)
..+.++. .|+++.-..+..........
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~---------------------------------------------------- 298 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVKY---------------------------------------------------- 298 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhhc----------------------------------------------------
Confidence 7776644 35554443333222221100
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q psy6603 323 IQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHA 402 (724)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 402 (724)
... -++--+.+.+..+++..|+.+-++++..+|.+..++...|.++...
T Consensus 299 -----------------------------ta~--~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 299 -----------------------------TAS--HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL 347 (564)
T ss_pred -----------------------------chh--hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence 011 1224456667789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcch
Q psy6603 403 GDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRW 482 (724)
Q Consensus 403 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 482 (724)
|+.++|+-.|+.+..+.|.+-.++..+..+|+..|++.+|.-.-+.+.+.-+....
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~------------------------ 403 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR------------------------ 403 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh------------------------
Confidence 99999999999999999999999999999999999999999877766653333222
Q ss_pred hhhhhhhhhhhhHhhhhhchHHHHHHHHH-HhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHH
Q psy6603 483 GDTLKKCHEVDRKCYEHKQYKNGLKFAKQ-ILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHV 561 (724)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 561 (724)
++..+-. ...+.+..--++|-++++. +...| ....+-..++..+...|++++++..+++.+...|+ ...+..
T Consensus 404 --~LtL~g~-~V~~~dp~~rEKAKkf~ek~L~~~P---~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~ 476 (564)
T KOG1174|consen 404 --SLTLFGT-LVLFPDPRMREKAKKFAEKSLKINP---IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNH 476 (564)
T ss_pred --hhhhhcc-eeeccCchhHHHHHHHHHhhhccCC---ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHH
Confidence 2222100 0011122234566666665 44444 55557788888888888888888888888887663 456777
Q ss_pred HHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHH
Q psy6603 562 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 598 (724)
Q Consensus 562 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 598 (724)
+|.++...+.+.+|.+.|..|+.++|++..+...|-.
T Consensus 477 Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 477 LGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 8888888888888888888888888888777666543
No 56
>KOG1174|consensus
Probab=99.88 E-value=8.6e-19 Score=157.88 Aligned_cols=416 Identities=13% Similarity=0.044 Sum_probs=297.1
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 104 (724)
|.+.+....++.|+...++-+.|+..+....... ..+.....++..+..-++-.++.-.+...+...|--......+..
T Consensus 94 ~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~ 172 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLE 172 (564)
T ss_pred cccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHH
Confidence 4567888899999999999999999887754322 234556666777777777667777777777766644333322222
Q ss_pred HHHHhcchHHHHHHHHHHHHhCCCchhHHH-HHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH
Q psy6603 105 LQIQMRDLEGYRETRYQLFMLRPTQRASWI-GFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD 183 (724)
Q Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 183 (724)
.-. .-.+.+--. ..++...|..+..|. ..+.+.+-.++...|...+--+. ....-|+ +...+..+|.++..
T Consensus 173 l~v--~g~e~~S~~-m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le-~~~~lr~----NvhLl~~lak~~~~ 244 (564)
T KOG1174|consen 173 LGV--NGNEINSLV-MHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLH-DNTTLRC----NEHLMMALGKCLYY 244 (564)
T ss_pred Hhh--cchhhhhhh-hhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHH-hhccCCc----cHHHHHHHhhhhhh
Confidence 211 111111111 123344455443332 33555555666666655443222 2222233 77888999999999
Q ss_pred cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHH
Q psy6603 184 SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLT 262 (724)
Q Consensus 184 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~ 262 (724)
.|++.+|+-.|+++...+|......-..|.++...|+++.-......++........-|+.-+.. +..+++..|+.+-+
T Consensus 245 ~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 245 NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888888876555555544444 77788999998888
Q ss_pred HHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCC
Q psy6603 263 HYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSL 342 (724)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 342 (724)
+++...|++..
T Consensus 325 K~I~~~~r~~~--------------------------------------------------------------------- 335 (564)
T KOG1174|consen 325 KCIDSEPRNHE--------------------------------------------------------------------- 335 (564)
T ss_pred HHhccCcccch---------------------------------------------------------------------
Confidence 88888777643
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc
Q psy6603 343 QDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTAD 422 (724)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 422 (724)
.+...|..+...|+.++|+-.|+.+..+.|...+.|..+..+|...|++.+|...-+.++..-|.+
T Consensus 336 --------------alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s 401 (564)
T KOG1174|consen 336 --------------ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS 401 (564)
T ss_pred --------------HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc
Confidence 333567777778889999999999999999888888889999999999999988888888888887
Q ss_pred hhhhhhHH-HHHH-HcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhh
Q psy6603 423 RYINSKCA-KYML-RANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHK 500 (724)
Q Consensus 423 ~~~~~~~~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 500 (724)
......+| .++. ...--++|...+++.++..|...... ..++.+....|++++++..++..
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV---------~~~AEL~~~Eg~~~D~i~LLe~~-------- 464 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAV---------NLIAELCQVEGPTKDIIKLLEKH-------- 464 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHH---------HHHHHHHHhhCccchHHHHHHHH--------
Confidence 77666664 3333 22345788888888888777654422 22567777777776666665433
Q ss_pred chHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHH
Q psy6603 501 QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGL 564 (724)
Q Consensus 501 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 564 (724)
+... .+...+..+|.++...+.+.+|.+.|..++.++|++..+...+-.
T Consensus 465 -----------L~~~----~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 465 -----------LIIF----PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred -----------Hhhc----cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 2222 344589999999999999999999999999999998776655443
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=4.9e-20 Score=174.23 Aligned_cols=232 Identities=14% Similarity=0.063 Sum_probs=186.3
Q ss_pred cchhhHHHHHHHhhC-CCCCC-ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHH
Q psy6603 6 KQYKNGLKFAKQILT-NPKYA-EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIK 83 (724)
Q Consensus 6 ~~~~~A~~~~~~~l~-~p~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 83 (724)
++.+.++..+.+++. .|.+| ..+..++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 566788999999997 23333 3478899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q psy6603 84 CYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVT 163 (724)
Q Consensus 84 ~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 163 (724)
.|+++++++|++..++..+|.++...|++++|+..++++++.+|+++... ....+....+++++|+..+.+..... +
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~--~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKL--D 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhC--C
Confidence 99999999999999999999999999999999999999999999987422 22233456789999999887654332 2
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHH--HHHHHH----HHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcC-
Q psy6603 164 NSYDFEHSELLLYQSMVIQDSGDLEE--AVKHLD----RFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQ- 236 (724)
Q Consensus 164 p~~~~~~~~~~~~~~~~~~~~g~~~~--A~~~~~----~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p- 236 (724)
|. .|. .+.+....|+... +++.+. ...+..|....+|+.+|.++...|++++|+..|++++..+|
T Consensus 197 ~~-------~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 197 KE-------QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred cc-------ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 22 111 2444455565533 333333 33356677788999999999999999999999999999997
Q ss_pred CcHHHHHHHHHH
Q psy6603 237 ENTLYYNKLVEA 248 (724)
Q Consensus 237 ~~~~~~~~l~~~ 248 (724)
+..+....+..+
T Consensus 269 ~~~e~~~~~~e~ 280 (296)
T PRK11189 269 NFVEHRYALLEL 280 (296)
T ss_pred hHHHHHHHHHHH
Confidence 666666665555
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.87 E-value=1.1e-21 Score=186.12 Aligned_cols=263 Identities=21% Similarity=0.260 Sum_probs=84.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc--CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRN--DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 109 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 109 (724)
+.+|.+++..|++++|++++++.+.. .|+++..|..+|.+....|++++|+..|++++..++.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 35577777788888888877655433 367777777777777777788888888887777777777777777776 577
Q ss_pred cchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHH
Q psy6603 110 RDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEE 189 (724)
Q Consensus 110 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 189 (724)
+++++|..++.+..+..+ ++..+...+.++...|+++++...++.+..... .+ ..+..+..+|.++.+.|+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~----~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-AP----DSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHHH
T ss_pred cccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-CC----CCHHHHHHHHHHHHHcCCHHH
Confidence 777777777776665543 345555566666666666666666665443221 11 234455555555556666666
Q ss_pred HHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q psy6603 190 AVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYP 269 (724)
Q Consensus 190 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 269 (724)
|+..++++++.+|+++.+...++.++...|+.+++...+.......|+++.
T Consensus 165 A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~----------------------------- 215 (280)
T PF13429_consen 165 ALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD----------------------------- 215 (280)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC-----------------------------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH-----------------------------
Confidence 666666666666655555555555555555555555544444433322211
Q ss_pred CCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q psy6603 270 KATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVE 349 (724)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 349 (724)
T Consensus 216 -------------------------------------------------------------------------------- 215 (280)
T PF13429_consen 216 -------------------------------------------------------------------------------- 215 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy6603 350 PASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417 (724)
Q Consensus 350 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 417 (724)
.+..+|.++...|++++|+.++++++..+|+++..+..+|.++...|+.++|..++.+++.
T Consensus 216 -------~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 216 -------LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -------HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred -------HHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2225677788889999999999999999999999999999999999999999998888765
No 59
>KOG3785|consensus
Probab=99.87 E-value=2.5e-17 Score=145.56 Aligned_cols=464 Identities=13% Similarity=0.066 Sum_probs=294.1
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCch-hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHH
Q psy6603 38 LNCLGRKEEAYEYVRRGLRNDLKSH-VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYR 116 (724)
Q Consensus 38 ~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~ 116 (724)
+....+|..|+.+++-....+.... ..-..+|.|++..|+|++|...|.-+.+.+..+...+.+|+-|++-+|.+.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 3456788889998887775554333 445567899999999999999999988877777888999999999999999998
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6603 117 ETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDR 196 (724)
Q Consensus 117 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 196 (724)
... ...|..+-....+-.+..+.|+-++-...-+.... ..+-.+.++.+.+..-.|++|++.|.+
T Consensus 112 ~~~----~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----------~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 112 SIA----EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----------TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHH----hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----------hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 554 44577776666666777778877766544333222 224556778888888899999999999
Q ss_pred HhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccc
Q psy6603 197 FKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPK 275 (724)
Q Consensus 197 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (724)
++.-+|+.......++.||.++.-++-+...+.--+...|+++.+....+.. ++.-+-..|......+........+.
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f- 255 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF- 255 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh-
Confidence 9999999999999999999999999999999999999999998887776655 44322222222222221111110000
Q ss_pred cccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHH
Q psy6603 276 RLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALL 355 (724)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 355 (724)
+...++..+. ++.. -+.+++-.-..++ ...
T Consensus 256 ---------------~~~l~rHNLV------------vFrn------gEgALqVLP~L~~-----------------~IP 285 (557)
T KOG3785|consen 256 ---------------IEYLCRHNLV------------VFRN------GEGALQVLPSLMK-----------------HIP 285 (557)
T ss_pred ---------------HHHHHHcCeE------------EEeC------CccHHHhchHHHh-----------------hCh
Confidence 0000000000 0000 0000000000000 000
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHH
Q psy6603 356 WVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLR 435 (724)
Q Consensus 356 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 435 (724)
.+..+++..|.+.++..+|+.+.+ +.+|..|.-+...|.+....|+-....+.++-+.
T Consensus 286 EARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe~gSreHlKiAq------------------- 343 (557)
T KOG3785|consen 286 EARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQ------------------- 343 (557)
T ss_pred HhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH-------------------
Confidence 123355555566666666665554 3456666666666666666555433333332222
Q ss_pred cCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcC
Q psy6603 436 ANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTN 515 (724)
Q Consensus 436 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 515 (724)
+.|+-+-..... ....+..++ ++..++-. .+|++.+...+.+..
T Consensus 344 --------qffqlVG~Sa~e-cDTIpGRQs------mAs~fFL~--------------------~qFddVl~YlnSi~s- 387 (557)
T KOG3785|consen 344 --------QFFQLVGESALE-CDTIPGRQS------MASYFFLS--------------------FQFDDVLTYLNSIES- 387 (557)
T ss_pred --------HHHHHhcccccc-cccccchHH------HHHHHHHH--------------------HHHHHHHHHHHHHHH-
Confidence 112111110000 111111111 22222222 345555555555554
Q ss_pred CCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccc-hHHHHHHHHhccccHHHHHHHHHHHhhhcc-ccHHHH
Q psy6603 516 PKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV-CWHVYGLLQRSDKKYDEAIKCYRNALKWEH-DNIQIM 593 (724)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 593 (724)
-+.++.+..++++.+....|++.+|.+.|-+.-..+-.+.. ....++.+|...|..+-|-+.|-+. ..| +....+
T Consensus 388 -YF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLL 464 (557)
T KOG3785|consen 388 -YFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLL 464 (557)
T ss_pred -HhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHH
Confidence 23345567899999999999999999999888766534444 5667899999999999998888664 223 333566
Q ss_pred HHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhh
Q psy6603 594 RDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQ 628 (724)
Q Consensus 594 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 628 (724)
.-+++...+.+.+=-|.++|..++.++|+.+.|.+
T Consensus 465 qlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeG 499 (557)
T KOG3785|consen 465 QLIANDCYKANEFYYAAKAFDELEILDPTPENWEG 499 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCC
Confidence 67788888999999999999999999999999975
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.87 E-value=1.4e-18 Score=172.16 Aligned_cols=240 Identities=9% Similarity=0.018 Sum_probs=173.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHH-HHHHhhcCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVY-GLLQRSDKKYDEAIKCYRNALKWEHDNIQI-MRDLSLLQ 106 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~-~~~la~~~ 106 (724)
...+..|......|+++.|.+.+.+..+..+. +..++.+ +.+....|+++.|..+|.++.+.+|++..+ ....+.++
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 44567788888899999999888876664333 4554444 666699999999999999999999998544 34558999
Q ss_pred HHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCCh-hhHHHHHHHHHHHHHcC
Q psy6603 107 IQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDF-EHSELLLYQSMVIQDSG 185 (724)
Q Consensus 107 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~g 185 (724)
...|+++.|...++++.+..|+++.++..++.+|...|+|++|+.++....+....+|.... ....++..+........
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998887755433000 00022222222233334
Q ss_pred CHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy6603 186 DLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYI 265 (724)
Q Consensus 186 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 265 (724)
+-+...+.++..-...|+++.+...++..+...|+.++|...++++++. |.++......+.+ ..+++++++...++.+
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l-~~~~~~~al~~~e~~l 321 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL-KTNNPEQLEKVLRQQI 321 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc-cCCChHHHHHHHHHHH
Confidence 4555556666665667788999999999999999999999999999984 4344333222222 2245555555555554
Q ss_pred HhCCCC
Q psy6603 266 SKYPKA 271 (724)
Q Consensus 266 ~~~~~~ 271 (724)
+.+|++
T Consensus 322 k~~P~~ 327 (398)
T PRK10747 322 KQHGDT 327 (398)
T ss_pred hhCCCC
Confidence 444443
No 61
>KOG2376|consensus
Probab=99.87 E-value=5.1e-17 Score=153.78 Aligned_cols=470 Identities=12% Similarity=0.043 Sum_probs=277.8
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
+-.+|+|++|.+...+++. ..|++..++.....++.+.++|++|+...+.-......+. ..+..+.|.++.+..++|
T Consensus 22 ~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred hccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHHH
Confidence 4467899999999999999 7789999999999999999999999965554332222222 226789999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQ 161 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 161 (724)
+.+++ ..++.+..+....|.+++++|+|++|..+|+.+++.+.++.+.-......-.. .+.. -+..+..+
T Consensus 99 lk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-----a~l~--~~~~q~v~ 168 (652)
T KOG2376|consen 99 LKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-----AALQ--VQLLQSVP 168 (652)
T ss_pred HHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-----Hhhh--HHHHHhcc
Confidence 99998 45677777888999999999999999999999988877655443332211100 0000 00233333
Q ss_pred cCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc--------c-------HhhHHHHHHHHHHHcCChHHHHH
Q psy6603 162 VTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIH--------D-------KLTVEETYGALKLKLGQYNEAMK 226 (724)
Q Consensus 162 ~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--------~-------~~~~~~~la~~~~~~g~~~~A~~ 226 (724)
..| ....+.+++.+.++...|+|.+|++.+++++++.. + -..+...++.++..+|+.++|..
T Consensus 169 ~v~---e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 169 EVP---EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred CCC---cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 333 34667889999999999999999999999954321 1 13367888999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHH----HHHHhccCChH--HHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhh
Q psy6603 227 HYESLIERNQENTLYYNK----LVEAKQLTNND--DIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFH 300 (724)
Q Consensus 227 ~~~~~~~~~p~~~~~~~~----l~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (724)
.|...+..+|.+...... +..+-...++- .++..++......+
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~------------------------------- 294 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLA------------------------------- 294 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhH-------------------------------
Confidence 999999998877543222 22211111110 11111111111000
Q ss_pred cCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy6603 301 KGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINA 380 (724)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 380 (724)
+.....+... ..-.++.+.+.+.+..+.-+.+.+....
T Consensus 295 -----------------------~~~l~~Ls~~-------------------qk~~i~~N~~lL~l~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 295 -----------------------EFLLSKLSKK-------------------QKQAIYRNNALLALFTNKMDQVRELSAS 332 (652)
T ss_pred -----------------------HHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 0000000000 0000223444444445555666555555
Q ss_pred HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-hhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCC
Q psy6603 381 AIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTAD-RYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMEN 459 (724)
Q Consensus 381 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 459 (724)
.-...|.....-........+...+..|...+....+-+|.. ..+....+......|+++.|++++.............
T Consensus 333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 445555533332333333333336777777777777777766 5566667777788888888888877443211000110
Q ss_pred hhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChH
Q psy6603 460 LNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKE 539 (724)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 539 (724)
....+.+... +-..+.+.++-+.|... +++|+.++..-.. ..+.....+...+..-.+.|+-+
T Consensus 413 ~~~~P~~V~a--iv~l~~~~~~~~~a~~v-------------l~~Ai~~~~~~~t--~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 413 AKHLPGTVGA--IVALYYKIKDNDSASAV-------------LDSAIKWWRKQQT--GSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred hccChhHHHH--HHHHHHhccCCccHHHH-------------HHHHHHHHHHhcc--cchHHHhHHHHHhHHHHhcCchH
Confidence 0000001100 23345555555555555 3344444433211 11222334445555555566677
Q ss_pred HHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHH
Q psy6603 540 EAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKC 578 (724)
Q Consensus 540 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 578 (724)
+|...+++.++.+|++..++..+-.+|... +.+.|..+
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 777777777776666666666666655544 44555444
No 62
>KOG1129|consensus
Probab=99.87 E-value=1.3e-19 Score=158.01 Aligned_cols=201 Identities=16% Similarity=0.202 Sum_probs=147.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcC
Q psy6603 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRAN 437 (724)
Q Consensus 358 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g 437 (724)
+..|+.+|.+..+...|+..+...++..|.++..+...++++..+++.++|.++|+.+++.+|.+.+....++..|+-.+
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~ 338 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDN 338 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCC
Confidence 34677778888888888888888888888888888888888888888888888888888888888877777777888888
Q ss_pred CHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCC
Q psy6603 438 LIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPK 517 (724)
Q Consensus 438 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 517 (724)
+.+-|+.+|+++++.+.
T Consensus 339 ~PE~AlryYRRiLqmG~--------------------------------------------------------------- 355 (478)
T KOG1129|consen 339 NPEMALRYYRRILQMGA--------------------------------------------------------------- 355 (478)
T ss_pred ChHHHHHHHHHHHHhcC---------------------------------------------------------------
Confidence 88888888888876222
Q ss_pred CCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCC---ccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHH
Q psy6603 518 YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK---SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 594 (724)
Q Consensus 518 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 594 (724)
.+++.+.++|.|+.-.++++-++..|++++....+ -.++|+++|.+....|++.-|..+|+-++..+|++.+++.
T Consensus 356 --~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn 433 (478)
T KOG1129|consen 356 --QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN 433 (478)
T ss_pred --CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH
Confidence 23446666777777777777777777776665321 2236777777777777777777777777777777777777
Q ss_pred HHHHHHHHhhhHhhHHHHHHHHHhhhhhh
Q psy6603 595 DLSLLQIQMRDLEGYREGVSAMENLNEMQ 623 (724)
Q Consensus 595 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 623 (724)
+|+.+..+.|++++|+..+..+....|.-
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 77777777777777777777666665543
No 63
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=3e-21 Score=183.05 Aligned_cols=257 Identities=21% Similarity=0.235 Sum_probs=120.2
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
++..|++++|++.+++.......|.++..|..+|.+....|++++|+..|++++..++.++..+..++.+ ...+++++|
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A 96 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEA 96 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 5778999999999977655212478889999999999999999999999999999999988888888888 789999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLR--PTQRASWIGFAMAYHLLHDFDMACNILEAFRKT 159 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 159 (724)
+..+.++.+.. .++..+.....++...++++++...++++.... |.++..|..+|.++.+.|+.++|+..++++++.
T Consensus 97 ~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 97 LKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999998765 457777888889999999999999999987655 678899999999999999999999999998877
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcH
Q psy6603 160 QQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENT 239 (724)
Q Consensus 160 ~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 239 (724)
. |+ +..+...++.++...|+++++.+.+.......|+++..+..+|.++..+|++++|+..|++++..+|+++
T Consensus 176 ~---P~----~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 176 D---PD----DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp ----TT-----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred C---CC----CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 7 43 6678888999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-ccCChHHHHHHHHHHHHh
Q psy6603 240 LYYNKLVEAK-QLTNNDDIFQLLTHYISK 267 (724)
Q Consensus 240 ~~~~~l~~~~-~~~~~~~a~~~~~~~~~~ 267 (724)
.+...++.++ ..|+.++|..+..++...
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 9999999995 569999999998887653
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.86 E-value=1.1e-19 Score=188.16 Aligned_cols=229 Identities=11% Similarity=0.041 Sum_probs=167.6
Q ss_pred HHHHHHHHHhcc---CCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhc---------CCHHHHHHHHHHHHhhCCCcHH
Q psy6603 30 TLAMKGLTLNCL---GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD---------KKYDEAIKCYRNALKWEHDNIQ 97 (724)
Q Consensus 30 ~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~a~~~~p~~~~ 97 (724)
.++..|...... +.+++|+..|+++++.+|+++.+|..+|.++... +++++|+..++++++++|+++.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~ 339 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ 339 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH
Confidence 445556544333 3567888888888888888888888887766533 3477888888888888888888
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q psy6603 98 IMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQ 177 (724)
Q Consensus 98 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 177 (724)
++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++.+..+..+ .....+
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-------~~~~~~ 412 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-------AAGITK 412 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-------hhHHHH
Confidence 8888888888888888888888888888888888888888888888888888888777666553322 233444
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhh-ccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChH
Q psy6603 178 SMVIQDSGDLEEAVKHLDRFKEQI-HDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNND 255 (724)
Q Consensus 178 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~ 255 (724)
+.++...|++++|+..+++++... |+++.++..+|.++...|++++|...+.++....|....+...++.. ...| +
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 490 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--E 490 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--H
Confidence 555666788888888888887764 66777778888888888888888888888777777777777766665 3444 3
Q ss_pred HHHHHHHHHHHh
Q psy6603 256 DIFQLLTHYISK 267 (724)
Q Consensus 256 ~a~~~~~~~~~~ 267 (724)
.+...++.+++.
T Consensus 491 ~a~~~l~~ll~~ 502 (553)
T PRK12370 491 RALPTIREFLES 502 (553)
T ss_pred HHHHHHHHHHHH
Confidence 666656555443
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=3e-19 Score=148.66 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=191.2
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHH
Q psy6603 352 SALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAK 431 (724)
Q Consensus 352 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 431 (724)
.....+...||..|...|++..|..-++++++.+|++..+|..++.+|...|..+.|.+.|+++++++|++..++...|.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 34445777999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHH
Q psy6603 432 YMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQ 511 (724)
Q Consensus 432 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~ 511 (724)
.++..|++++|...|++++.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~------------------------------------------------------------ 131 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALA------------------------------------------------------------ 131 (250)
T ss_pred HHHhCCChHHHHHHHHHHHh------------------------------------------------------------
Confidence 99999999999999888864
Q ss_pred HhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHH
Q psy6603 512 ILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 591 (724)
Q Consensus 512 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 591 (724)
.|.++..++++.++|.|..+.|+.+.|.+.|+++++.+|+.+.....++..+...|++-.|..++++.....+-..+
T Consensus 132 ---~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 132 ---DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred ---CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH
Confidence 33556667799999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhh
Q psy6603 592 IMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMW 626 (724)
Q Consensus 592 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 626 (724)
.+.....+--..||-+.+.+.-..+....|.+..+
T Consensus 209 sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 209 SLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 88877888888888888777777777777766544
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=3.8e-18 Score=170.14 Aligned_cols=230 Identities=12% Similarity=0.023 Sum_probs=170.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhh----hHHHHHHHc
Q psy6603 361 LAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINS----KCAKYMLRA 436 (724)
Q Consensus 361 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ 436 (724)
.+.++...|+++.|...+++.++..|+++.++..++.++...|++++|.+.+.+..+..+.++.... .....+...
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4666777899999999999999999999999999999999999999999999998877443322111 001111111
Q ss_pred CCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCC
Q psy6603 437 NLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNP 516 (724)
Q Consensus 437 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 516 (724)
+..+++.+.+..+ ....|
T Consensus 239 ~~~~~~~~~L~~~--------------------------------------------------------------~~~~p 256 (409)
T TIGR00540 239 AMADEGIDGLLNW--------------------------------------------------------------WKNQP 256 (409)
T ss_pred HHHhcCHHHHHHH--------------------------------------------------------------HHHCC
Confidence 1111111122111 11111
Q ss_pred -CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchH--HHHHHHHhccccHHHHHHHHHHHhhhccccH--H
Q psy6603 517 -KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCW--HVYGLLQRSDKKYDEAIKCYRNALKWEHDNI--Q 591 (724)
Q Consensus 517 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~ 591 (724)
..+.++..+..+|..+...|++++|.+.++++++..|++.... ..........++.+.+++.++++++..|+++ .
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ 336 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCC 336 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHH
Confidence 2235677899999999999999999999999999999887632 3334444556888999999999999999999 8
Q ss_pred HHHHHHHHHHHhhhHhhHHHHHH--HHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHH
Q psy6603 592 IMRDLSLLQIQMRDLEGYREGVS--AMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRH 654 (724)
Q Consensus 592 ~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 654 (724)
....+|+++...|+|++|.+.++ ......|+...+ ..+|.++.+.|+.++|.+++++.+..
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~--~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL--AMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999999999 455566766555 46899999999999999999988755
No 67
>KOG1125|consensus
Probab=99.85 E-value=1.2e-19 Score=171.38 Aligned_cols=239 Identities=14% Similarity=0.127 Sum_probs=195.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCH
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLI 439 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~ 439 (724)
..|..+.+.|+..+|.-+|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..+...+|..|...|.-
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHH-HhcCCCC
Q psy6603 440 KEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQ-ILTNPKY 518 (724)
Q Consensus 440 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~ 518 (724)
.+|+.++.+-+...|........ ...+++..- + .......+.+-.+.|-. .... ..
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a--------------~~~~~~~~~-~-------s~~~~~~l~~i~~~fLeaa~~~-~~ 426 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSA--------------GENEDFENT-K-------SFLDSSHLAHIQELFLEAARQL-PT 426 (579)
T ss_pred HHHHHHHHHHHHhCccchhcccc--------------CccccccCC-c-------CCCCHHHHHHHHHHHHHHHHhC-CC
Confidence 99999999988755432110000 000000000 0 00000112222333322 2222 22
Q ss_pred CchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHH
Q psy6603 519 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 598 (724)
Q Consensus 519 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 598 (724)
..++++...||.+|.-.|++++|+.+|+.||...|++...|+.||-++....+.++|+..|++|+++.|....++++||.
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHhhHHHHHHHHHhhhh
Q psy6603 599 LQIQMRDLEGYREGVSAMENLNE 621 (724)
Q Consensus 599 ~~~~~~~~~~a~~~~~~~~~~~~ 621 (724)
.++.+|.|++|.+.+-.++...+
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhh
Confidence 99999999999999988776553
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=2.2e-18 Score=178.50 Aligned_cols=206 Identities=11% Similarity=0.072 Sum_probs=170.1
Q ss_pred cCCCchhH--HHHHHHHHhh---cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc---------chHHHHHHHHHH
Q psy6603 57 NDLKSHVC--WHVYGLLQRS---DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMR---------DLEGYRETRYQL 122 (724)
Q Consensus 57 ~~p~~~~~--~~~lg~~~~~---~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~ 122 (724)
..|.+..+ ++..|..... .+.+++|+..|+++++++|+++.++..+|.++...+ ++++|...++++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 44555554 3444554433 345789999999999999999999999999887543 378999999999
Q ss_pred HHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q psy6603 123 FMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIH 202 (724)
Q Consensus 123 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 202 (724)
++++|+++.++..+|.++...|++++|+..++++++.. |+ ++.+++.+|.++...|++++|+..++++++.+|
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---P~----~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS---PI----SADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999877765 54 667899999999999999999999999999999
Q ss_pred cHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CCcHHHHHHHHHHh-ccCChHHHHHHHHHHHHhCC
Q psy6603 203 DKLTVEETYGALKLKLGQYNEAMKHYESLIERN-QENTLYYNKLVEAK-QLTNNDDIFQLLTHYISKYP 269 (724)
Q Consensus 203 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~-~~~~~~~a~~~~~~~~~~~~ 269 (724)
.++.....++.++...|++++|+..+++++... |+++..+..++.++ ..|++++|...+.++....|
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 998877777878888999999999999999885 77777777777663 55777777776665544433
No 69
>KOG1129|consensus
Probab=99.84 E-value=2.9e-19 Score=155.90 Aligned_cols=263 Identities=12% Similarity=0.101 Sum_probs=231.4
Q ss_pred ccccchhhHHHHHHHhhC----CCC----CCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhh
Q psy6603 3 YEHKQYKNGLKFAKQILT----NPK----YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS 74 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~----~p~----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 74 (724)
|...|.+.|-..+...+. .|. .-.+.-.-..+|.||++.|.+.+|.+.++..++..|. ++.+..++.+|.+
T Consensus 190 yhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~r 268 (478)
T KOG1129|consen 190 YHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQR 268 (478)
T ss_pred HhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHH
Confidence 445666677666555443 111 1112223367999999999999999999999998775 7788899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHH
Q psy6603 75 DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILE 154 (724)
Q Consensus 75 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 154 (724)
..+...|+..|...++..|.+...+..++.++..+++.++|.++|+.+++.+|.+.++...+|.-|+-.++.+-|+.+|.
T Consensus 269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc---cHhhHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6603 155 AFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIH---DKLTVEETYGALKLKLGQYNEAMKHYESL 231 (724)
Q Consensus 155 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 231 (724)
+.+...-.+ ++.+.++|.|....++++-++..|++++.... ...++|+++|.+....|++.-|..+|+-+
T Consensus 349 RiLqmG~~s-------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 349 RILQMGAQS-------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHHhcCCC-------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 998887544 46999999999999999999999999987643 23679999999999999999999999999
Q ss_pred HHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCc
Q psy6603 232 IERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATV 273 (724)
Q Consensus 232 ~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (724)
+..+|++.+++.+++.+ .+.|+.+.|..++..+....|....
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 99999999999999999 7789999999999999999998643
No 70
>KOG0550|consensus
Probab=99.83 E-value=1.6e-18 Score=156.46 Aligned_cols=299 Identities=13% Similarity=0.061 Sum_probs=202.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 108 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 108 (724)
+-....|..++...+|.+|+..+..+++..|++...|...+.+++..|+|++|....++.++++|..+......+.|+..
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 44555666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHH
Q psy6603 109 MRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLE 188 (724)
Q Consensus 109 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 188 (724)
+++..+|...++ +..++ .+...+....+..+.... .+....+.+..+.++...|+++
T Consensus 130 ~~~~i~A~~~~~--------~~~~~--------------~~anal~~~~~~~~s~s~-~pac~~a~~lka~cl~~~~~~~ 186 (486)
T KOG0550|consen 130 LSDLIEAEEKLK--------SKQAY--------------KAANALPTLEKLAPSHSR-EPACFKAKLLKAECLAFLGDYD 186 (486)
T ss_pred hHHHHHHHHHhh--------hhhhh--------------HHhhhhhhhhcccccccC-CchhhHHHHhhhhhhhhcccch
Confidence 777777766554 11111 111112222222211111 1224455566677777788888
Q ss_pred HHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q psy6603 189 EAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKY 268 (724)
Q Consensus 189 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 268 (724)
+|...--..+++++.+..++...|.++.-.++.+.|+..|++++.++|+....-......
T Consensus 187 ~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~-------------------- 246 (486)
T KOG0550|consen 187 EAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMP-------------------- 246 (486)
T ss_pred hHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhH--------------------
Confidence 888888888888888888888888888888888888888888888777655422111100
Q ss_pred CCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q psy6603 269 PKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEV 348 (724)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 348 (724)
T Consensus 247 -------------------------------------------------------------------------------- 246 (486)
T KOG0550|consen 247 -------------------------------------------------------------------------------- 246 (486)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchh
Q psy6603 349 EPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPT----LIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRY 424 (724)
Q Consensus 349 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 424 (724)
.... .+..-|.-.++.|++.+|.++|..+|.++|+ ++..|.+++.+..+.|+..+|+...+.+++++|.-..
T Consensus 247 --k~le--~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 247 --KKLE--VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred --HHHH--HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 0000 1124455566778888888888888888886 4556777788888888888888888888888887777
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHhhhccc
Q psy6603 425 INSKCAKYMLRANLIKEAEETCSKFTREGV 454 (724)
Q Consensus 425 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 454 (724)
.+...|.+++..+++++|++.|+++.+...
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 777778888888888888888888876443
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.83 E-value=3.7e-18 Score=142.22 Aligned_cols=206 Identities=14% Similarity=0.048 Sum_probs=174.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy6603 63 VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL 142 (724)
Q Consensus 63 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 142 (724)
.+...+|.-|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34677888888888888888888888888888888888888888888888888888888888888888889999999999
Q ss_pred cCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChH
Q psy6603 143 LHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYN 222 (724)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 222 (724)
+|++++|...|+++... |. -+..+..+.++|.|..+.|+.+.|...|+++++.+|+.+.....++..+++.|++.
T Consensus 116 qg~~~eA~q~F~~Al~~----P~-Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 116 QGRPEEAMQQFERALAD----PA-YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred CCChHHHHHHHHHHHhC----CC-CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 99999998888876643 22 22356788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCc
Q psy6603 223 EAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATV 273 (724)
Q Consensus 223 ~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (724)
.|...+++.....+-..+.+.....+ -..|+-+.+-.+=.++...+|.+..
T Consensus 191 ~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 191 PARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999999888877666655555555 5679998888888888888998754
No 72
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.82 E-value=3.6e-17 Score=162.09 Aligned_cols=256 Identities=10% Similarity=0.012 Sum_probs=198.7
Q ss_pred ccccchhhHHHHHHHhhCCCCCCChHHHHHHH-HHHHhccCCHHHHHHHHHHHHHcCCCchhH-HHHHHHHHhhcCCHHH
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMK-GLTLNCLGRKEEAYEYVRRGLRNDLKSHVC-WHVYGLLQRSDKKYDE 80 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~lg~~~~~~g~~~~ 80 (724)
+..|+|++|.+......+. ++++...+.+ +....+.|+++.|..++.++.+.+|++... ....+.++...|++++
T Consensus 95 ~~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HhCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 3469999999888775552 2334444444 666699999999999999999999997644 3445899999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHH--------HHHHHHHHcCCHHHHHHH
Q psy6603 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWI--------GFAMAYHLLHDFDMACNI 152 (724)
Q Consensus 81 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~--------~la~~~~~~g~~~~A~~~ 152 (724)
|...++++.+.+|+++.++..++.+|...|++++|...+.++.+..+.++.... .+........+-+..
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l--- 248 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL--- 248 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH---
Confidence 999999999999999999999999999999999999999999887766443222 211111222222222
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6603 153 LEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLI 232 (724)
Q Consensus 153 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 232 (724)
.++.+.. |...+..+.+....+..+...|+.++|...++++++. |.++......+.+ ..++.+++++..++.+
T Consensus 249 -~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~l 321 (398)
T PRK10747 249 -KRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQI 321 (398)
T ss_pred -HHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHH
Confidence 2322222 2222346778999999999999999999999999995 4455444444443 4599999999999999
Q ss_pred HHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCC
Q psy6603 233 ERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKA 271 (724)
Q Consensus 233 ~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~ 271 (724)
+..|+++..+..+|.+ +..+++++|...|+++++..|+.
T Consensus 322 k~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 322 KQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 9999999999999999 78899999999999998887765
No 73
>KOG1125|consensus
Probab=99.82 E-value=1.4e-18 Score=164.30 Aligned_cols=237 Identities=13% Similarity=0.104 Sum_probs=200.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 111 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 111 (724)
+..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|+|..++..||.+|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCchhHHHH-------HHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc
Q psy6603 112 LEGYRETRYQLFMLRPTQRASWIG-------FAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS 184 (724)
Q Consensus 112 ~~~A~~~~~~~l~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 184 (724)
-.+|...+.+-+...|........ ..........+..-.+. ++......|. ...+++...+|.+|.-.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~---fLeaa~~~~~--~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQEL---FLEAARQLPT--KIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHH---HHHHHHhCCC--CCChhHHhhhHHHHhcc
Confidence 999999999999888753211110 00000001111222222 3333333332 23567899999999999
Q ss_pred CCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHH
Q psy6603 185 GDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTH 263 (724)
Q Consensus 185 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~ 263 (724)
|+|++|+.+|+.++...|++...|..+|..+....+.++|+..|.+++++.|....+++.+|.. ..+|.|.+|+..|-.
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 678999999999999
Q ss_pred HHHhCCCCCc
Q psy6603 264 YISKYPKATV 273 (724)
Q Consensus 264 ~~~~~~~~~~ 273 (724)
++...+.+..
T Consensus 524 AL~mq~ks~~ 533 (579)
T KOG1125|consen 524 ALSMQRKSRN 533 (579)
T ss_pred HHHhhhcccc
Confidence 9999887544
No 74
>KOG0550|consensus
Probab=99.82 E-value=4e-18 Score=153.93 Aligned_cols=357 Identities=15% Similarity=0.123 Sum_probs=247.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-
Q psy6603 170 HSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA- 248 (724)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~- 248 (724)
.++-....|..+++..+|..|+..+..+++..|++...|...+.+++..|++++|.-..++.+++.|..+......+.+
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 3444555677889999999999999999999999999999999999999999999999999999999888877777766
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHH
Q psy6603 249 KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVE 328 (724)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 328 (724)
...++..+|...++..- |. ....++.
T Consensus 128 ~a~~~~i~A~~~~~~~~---~~---------------------------------------------------~~anal~ 153 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQ---AY---------------------------------------------------KAANALP 153 (486)
T ss_pred hhhHHHHHHHHHhhhhh---hh---------------------------------------------------HHhhhhh
Confidence 34455555554444100 00 0111112
Q ss_pred HHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHH
Q psy6603 329 SYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEA 408 (724)
Q Consensus 329 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A 408 (724)
.+...+.. ...+|.... .-..-+.++.-.|++++|+..--..+++++.+.++++..|.++...++.+.|
T Consensus 154 ~~~~~~~s----------~s~~pac~~-a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka 222 (486)
T KOG0550|consen 154 TLEKLAPS----------HSREPACFK-AKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKA 222 (486)
T ss_pred hhhccccc----------ccCCchhhH-HHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHH
Confidence 22222111 111222222 2336677888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCccchhhh------------hhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHH
Q psy6603 409 YKWLDEAQSLDTADRYIN------------SKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAY 476 (724)
Q Consensus 409 ~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (724)
+..|++++.++|+..... ..-|.-.++.|++..|.+.|..+
T Consensus 223 ~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea--------------------------- 275 (486)
T KOG0550|consen 223 INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA--------------------------- 275 (486)
T ss_pred HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh---------------------------
Confidence 999999999999854322 12233333333333333333333
Q ss_pred HhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCC-chhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCc
Q psy6603 477 QRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYA-EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555 (724)
Q Consensus 477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 555 (724)
|..+|.+. .++..|.+++.+..++|+..+|+...+.+++++|..
T Consensus 276 -----------------------------------l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 276 -----------------------------------LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred -----------------------------------hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 44444322 245678999999999999999999999999999999
Q ss_pred cchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhh--hHhhHHHHHHHHH--hhhhhhhhhhhhhH
Q psy6603 556 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMR--DLEGYREGVSAME--NLNEMQCMWFQTEC 631 (724)
Q Consensus 556 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~--~~~~~~~~~~~~~l 631 (724)
..++...|.++..+++|++|++.|+++++...+ ......+......+. ........+-... +..+...+| ..+
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkay--rk~ 397 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAY--RKL 397 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHH--HHH
Confidence 999999999999999999999999999998766 555555555444333 2222222222111 222333444 334
Q ss_pred HHHHH---HhCChhHHHHHHHHHHHHHh
Q psy6603 632 ALAYQ---RLGRWGDTLKKCHEVDRHFS 656 (724)
Q Consensus 632 a~~~~---~~g~~~~A~~~~~~~~~~~~ 656 (724)
+.+++ ..|.-.+|...|.++-+.|.
T Consensus 398 AL~~Hpd~~agsq~eaE~kFkevgeAy~ 425 (486)
T KOG0550|consen 398 ALVHHPDKNAGSQKEAEAKFKEVGEAYT 425 (486)
T ss_pred HHHhCCCcCcchhHHHHHHHHHHHHHHH
Confidence 44442 33445666666766665544
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.82 E-value=4.4e-18 Score=160.98 Aligned_cols=237 Identities=14% Similarity=0.090 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q psy6603 323 IQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHA 402 (724)
Q Consensus 323 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 402 (724)
.+..+..+.+.+... ...+......++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...
T Consensus 42 ~e~~i~~~~~~l~~~----------~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 42 QEVILARLNQILASR----------DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQA 111 (296)
T ss_pred HHHHHHHHHHHHccc----------cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Confidence 455566666666431 1222333446789999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcch
Q psy6603 403 GDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRW 482 (724)
Q Consensus 403 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 482 (724)
|++++|+..|+++++++|++..++..+|.++...|++++|++.|+++++.+|.... ...|. .+....+++
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-----~~~~~-----~l~~~~~~~ 181 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-----RALWL-----YLAESKLDP 181 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----HHHHH-----HHHHccCCH
Confidence 99999999999999999999999999999999999999999999999998776431 11221 122334555
Q ss_pred hhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHH--HHHHH----HhhhcCCCcc
Q psy6603 483 GDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEA--YEYVR----RGLRNDLKSH 556 (724)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~~~~~----~al~~~p~~~ 556 (724)
++|+..+.+. +... .+. .|. .+.+....|+..++ ...+. ..++++|..+
T Consensus 182 ~~A~~~l~~~-------------------~~~~--~~~---~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (296)
T PRK11189 182 KQAKENLKQR-------------------YEKL--DKE---QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLC 236 (296)
T ss_pred HHHHHHHHHH-------------------HhhC--Ccc---ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHH
Confidence 5555544322 2221 111 222 35555666766443 33333 2335566777
Q ss_pred chHHHHHHHHhccccHHHHHHHHHHHhhhcc-ccHHHHHHHHHHHHHhh
Q psy6603 557 VCWHVYGLLQRSDKKYDEAIKCYRNALKWEH-DNIQIMRDLSLLQIQMR 604 (724)
Q Consensus 557 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~ 604 (724)
.+|+.+|.++...|++++|+.+|+++++.+| ++++..+.+..+....+
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999996 66777766665544433
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=1.4e-17 Score=155.50 Aligned_cols=198 Identities=17% Similarity=0.121 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy6603 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 107 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 107 (724)
+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhcchHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcC
Q psy6603 108 QMRDLEGYRETRYQLFMLR--PTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSG 185 (724)
Q Consensus 108 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g 185 (724)
..|++++|+..+++++... |.....+..+|.++...|++++|...++++.+.. |. ....+..+|.++...|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID---PQ----RPESLLELAELYYLRG 183 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cC----ChHHHHHHHHHHHHcC
Confidence 6666666666666555432 2233444445555555555555555444443332 11 2234444455555555
Q ss_pred CHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6603 186 DLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLI 232 (724)
Q Consensus 186 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 232 (724)
++++|+..+++++...|.++..+..++.++...|+.++|....+.+.
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555555544444444444444445555555555544444433
No 77
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=3.2e-16 Score=137.10 Aligned_cols=235 Identities=18% Similarity=0.184 Sum_probs=192.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHH
Q psy6603 31 LAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN-----IQIMRDLSLL 105 (724)
Q Consensus 31 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~ 105 (724)
-+..|.-+.-..+.++|++.|-.+++.+|...++...+|..+.+.|..+.|+...+..+. .|+- ..+...||.=
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 356677788889999999999999999999999999999999999999999999888776 5654 3378899999
Q ss_pred HHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcC
Q psy6603 106 QIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSG 185 (724)
Q Consensus 106 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g 185 (724)
|+..|-++.|...|....+...--..+...+..+|....+|++|++.-+++.+..+..- ....+..+..++..+....
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHHHHhhhh
Confidence 99999999999999888876666678899999999999999999988887776654333 3567778888999999999
Q ss_pred CHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcH-HHHHHHHHHh-ccCChHHHHHHHHH
Q psy6603 186 DLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENT-LYYNKLVEAK-QLTNNDDIFQLLTH 263 (724)
Q Consensus 186 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~-~~~~~~~a~~~~~~ 263 (724)
+.+.|+..+.++++.+|+...+-..+|.+....|+++.|++.++.+++.+|+.. .+...+..+| ..|+.++....+.+
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988642 3333333332 23444444444444
Q ss_pred HHHhC
Q psy6603 264 YISKY 268 (724)
Q Consensus 264 ~~~~~ 268 (724)
+.+..
T Consensus 275 ~~~~~ 279 (389)
T COG2956 275 AMETN 279 (389)
T ss_pred HHHcc
Confidence 44333
No 78
>KOG3785|consensus
Probab=99.81 E-value=2.1e-15 Score=133.53 Aligned_cols=458 Identities=12% Similarity=0.084 Sum_probs=290.0
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
+..+.+|..|+.+++-.+.. ...+....-..+|.|+++.|+|++|+..|.-+...+.-+...+..++.+++-.|.|.+|
T Consensus 32 fls~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 34568999999999887762 12233456677999999999999999999999887766788899999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQ 161 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 161 (724)
...-.+ .|+++-....+-.+..+.|+-++-...- ..+.. ..+-...++.+.+..-.|++|+++|.+.+.
T Consensus 111 ~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh-~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--- 179 (557)
T KOG3785|consen 111 KSIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFH-SSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--- 179 (557)
T ss_pred HHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHH-HHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 876655 4677766666666666667655544333 22221 224456788888888999999999888554
Q ss_pred cCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcC-CcHH
Q psy6603 162 VTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQ-ENTL 240 (724)
Q Consensus 162 ~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~ 240 (724)
.+|+ ....-.+++.+|.+..-++-+.+.+.-.++..|+++-+...++...+++=+-.-|..-...+.+.-. ..+.
T Consensus 180 dn~e----y~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 180 DNPE----YIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred cChh----hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 3344 5566678899999999999999999999999999999988888887776444444444444332211 1111
Q ss_pred HHHHHHHHh-ccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhh
Q psy6603 241 YYNKLVEAK-QLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEK 319 (724)
Q Consensus 241 ~~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (724)
.-..+-.-+ --.+-+.|++++-..+..-|+... .+.+.++..++..++..-. .-+.+..|.-+..-+......|.
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl--NL~iYyL~q~dVqeA~~L~--Kdl~PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL--NLIIYYLNQNDVQEAISLC--KDLDPTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh--hheeeecccccHHHHHHHH--hhcCCCChHHHHHHHHHHHHhhh
Confidence 111111111 124557788888877777776533 3555666777777766322 22233344444333333332221
Q ss_pred H---HHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q psy6603 320 C---KIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKG 396 (724)
Q Consensus 320 ~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~ 396 (724)
. ....+..+.+-+.+....... ..-|.. ..+|.+++-..++++.+.+++..-....++....++++
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ec-----DTIpGR------QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~A 400 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALEC-----DTIPGR------QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLA 400 (557)
T ss_pred hcCcHHHHHHHHHHHHHhccccccc-----ccccch------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHH
Confidence 1 112222233333332211100 111211 13444555567888888888877777777777888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCccc-hhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHH
Q psy6603 397 RIYKHAGDVLEAYKWLDEAQSLDTAD-RYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALA 475 (724)
Q Consensus 397 ~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (724)
......|++.+|.+.|-+....+-.+ ......++.++.+.++.+-|.+.+-+.-
T Consensus 401 QAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~------------------------- 455 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN------------------------- 455 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC-------------------------
Confidence 88888888888888887776655334 3344567888888888877776654432
Q ss_pred HHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCc
Q psy6603 476 YQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAE 520 (724)
Q Consensus 476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 520 (724)
...++...++-+...||..++|--|.+.|+.+....+.|.
T Consensus 456 -----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 456 -----TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred -----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 1222333333444455666666666666666555444443
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=3.4e-17 Score=152.85 Aligned_cols=204 Identities=14% Similarity=0.101 Sum_probs=184.7
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy6603 61 SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140 (724)
Q Consensus 61 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 140 (724)
....+..+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCC
Q psy6603 141 HLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQ 220 (724)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 220 (724)
...|++++|+..++++..... .+ .....+..+|.++...|++++|...+.+++...|+++.++..+|.++...|+
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPL-YP----QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHcccHHHHHHHHHHHHhccc-cc----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence 999999999999999876421 12 2456788899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCC
Q psy6603 221 YNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYP 269 (724)
Q Consensus 221 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~ 269 (724)
+++|...+++++...|.++..+..++.+ ...|+.++|..+.+.+....|
T Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 185 YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 9999999999999988888887777777 467999999998887766544
No 80
>PLN02789 farnesyltranstransferase
Probab=99.78 E-value=1.1e-16 Score=150.16 Aligned_cols=216 Identities=12% Similarity=0.074 Sum_probs=187.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK-KYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 107 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 107 (724)
+++-.+-.++...++.++|+..+.+++..+|++..+|+..|.++...| ++++++..+.+++..+|++..+|...+.+..
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 444444445666788999999999999999999999999999999998 6899999999999999999999999999998
Q ss_pred Hhcch--HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc-
Q psy6603 108 QMRDL--EGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS- 184 (724)
Q Consensus 108 ~~~~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~- 184 (724)
..|.. ++++.++.++++.+|.+..+|..++.++...|++++|+..++++++.. |. +..+|..++.++...
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~----N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VR----NNSAWNQRYFVITRSP 190 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CC----chhHHHHHHHHHHhcc
Confidence 88874 778999999999999999999999999999999999999998877765 33 566899999888765
Q ss_pred --CCH----HHHHHHHHHHhhhhccHhhHHHHHHHHHHH----cCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhcc
Q psy6603 185 --GDL----EEAVKHLDRFKEQIHDKLTVEETYGALKLK----LGQYNEAMKHYESLIERNQENTLYYNKLVEAKQL 251 (724)
Q Consensus 185 --g~~----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 251 (724)
|.+ ++++.+..+++..+|++..+|..++.++.. .++..+|+..+.+++..+|.++.+...++.++..
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 333 578888899999999999999999999988 4566789999999999999999888888888643
No 81
>KOG2047|consensus
Probab=99.78 E-value=1.9e-13 Score=131.03 Aligned_cols=536 Identities=14% Similarity=0.140 Sum_probs=318.8
Q ss_pred HHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--------hcchHHHHHHHHHHH
Q psy6603 52 RRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ--------MRDLEGYRETRYQLF 123 (724)
Q Consensus 52 ~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~--------~~~~~~A~~~~~~~l 123 (724)
+.-+-.+|.+..+|......... .-..+-.-.|+++++.-|.+..+|+..-..-.. ...++..-.+|++++
T Consensus 17 EeEilRnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~l 95 (835)
T KOG2047|consen 17 EEEILRNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCL 95 (835)
T ss_pred HHHHHcCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH
Confidence 33344556666666554443332 222334456667777777766666554322211 112445556667777
Q ss_pred HhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc
Q psy6603 124 MLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHD 203 (724)
Q Consensus 124 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 203 (724)
-.--..|..|......+..+|+...-...|++++..++... +..+|-.........|-++-++..|++.++..|.
T Consensus 96 v~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq-----H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~ 170 (835)
T KOG2047|consen 96 VFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ-----HDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPE 170 (835)
T ss_pred HHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh-----hccchHHHHHHHHhCCChHHHHHHHHHHHhcCHH
Confidence 76667788999999999999999999999999988885433 4556665566677788889999999999999887
Q ss_pred HhhHHHHHHHHHHHcCChHHHHHHHHHHHHHc-------CCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcccc
Q psy6603 204 KLTVEETYGALKLKLGQYNEAMKHYESLIERN-------QENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKR 276 (724)
Q Consensus 204 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (724)
. .......+...+++++|.+.+...+..+ |.+...|..+..+ +..+|+.....
T Consensus 171 ~---~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl----------------is~~p~~~~sl- 230 (835)
T KOG2047|consen 171 A---REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL----------------ISQNPDKVQSL- 230 (835)
T ss_pred H---HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH----------------HHhCcchhccc-
Confidence 6 3455677888999999999998887543 3334445544444 33333321100
Q ss_pred ccccccCchhHHHHHHHHHHhhhh---cCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhH
Q psy6603 277 LSLNYVSGDQFRTEIDKYLRHGFH---KGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASA 353 (724)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 353 (724)
+ ++.+++..+. ....-++..|+..|-..|. .+++-..|++++...-...+ -....
T Consensus 231 ---------n----vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~---~ekarDvyeeai~~v~tvrD------Ft~if 288 (835)
T KOG2047|consen 231 ---------N----VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL---FEKARDVYEEAIQTVMTVRD------FTQIF 288 (835)
T ss_pred ---------C----HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhheehhh------HHHHH
Confidence 0 0111111111 1233455666777766655 55556666666654221100 00011
Q ss_pred HHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHh------------cCCChHHHHHHHHHHHHHcCCHHHH
Q psy6603 354 LLWVYHYLAQHYDHLG-------------DTMKALNYINAAID------------HTPTLIELFVTKGRIYKHAGDVLEA 408 (724)
Q Consensus 354 ~~~~~~~la~~~~~~~-------------~~~~A~~~~~~~l~------------~~p~~~~~~~~l~~~~~~~g~~~~A 408 (724)
...+.+.-..+-..++ +.+-.+..|+..+. .+|++..-|.....++ .|+..+-
T Consensus 289 d~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~ 366 (835)
T KOG2047|consen 289 DAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQ 366 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHH
Confidence 1111111111111111 22334444555443 4567777777666554 6889999
Q ss_pred HHHHHHHHcc-Cccc-----hhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcch
Q psy6603 409 YKWLDEAQSL-DTAD-----RYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRW 482 (724)
Q Consensus 409 ~~~~~~a~~~-~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 482 (724)
+..|..|+.. +|.- ..++..+|..|...|+.+.|..+|+++++..-....++ ..+|.. .|..-.+..++
T Consensus 367 i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL---a~vw~~--waemElrh~~~ 441 (835)
T KOG2047|consen 367 INTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL---AEVWCA--WAEMELRHENF 441 (835)
T ss_pred HHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH---HHHHHH--HHHHHHhhhhH
Confidence 9999988865 6643 46778899999999999999999999998554444443 445544 35666677778
Q ss_pred hhhhhhhhhhhh-------HhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCc
Q psy6603 483 GDTLKKCHEVDR-------KCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555 (724)
Q Consensus 483 ~~A~~~~~~~~~-------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 555 (724)
+.|+++...+.. ..|+.+..-.+ .+- ....+|..+++.....|-++.-...|++++++.--.
T Consensus 442 ~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~-----rlh------rSlkiWs~y~DleEs~gtfestk~vYdriidLriaT 510 (835)
T KOG2047|consen 442 EAALKLMRRATHVPTNPELEYYDNSEPVQA-----RLH------RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT 510 (835)
T ss_pred HHHHHHHHhhhcCCCchhhhhhcCCCcHHH-----HHH------HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 888777665430 11111110000 000 123467777777777777777777888888777777
Q ss_pred cchHHHHHHHHhccccHHHHHHHHHHHhhhcc--ccHHHHHHHHHHHH---HhhhHhhHHHHHHHHHhhhhhh-hhhhhh
Q psy6603 556 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH--DNIQIMRDLSLLQI---QMRDLEGYREGVSAMENLNEMQ-CMWFQT 629 (724)
Q Consensus 556 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 629 (724)
|..-.+.|..+....-+++|.+.|++.+.+.| .-.++|...-.... .....+.|+..|+++++..|.. ...+..
T Consensus 511 Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyL 590 (835)
T KOG2047|consen 511 PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYL 590 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 77777777777777778888888888777543 22344433222222 2234677777777777655543 222223
Q ss_pred hHHHHHHHhCChhHHHHHHHHHHH
Q psy6603 630 ECALAYQRLGRWGDTLKKCHEVDR 653 (724)
Q Consensus 630 ~la~~~~~~g~~~~A~~~~~~~~~ 653 (724)
.-|..-..-|-...|+.+|+++-.
T Consensus 591 lYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 591 LYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 333344555666777777766543
No 82
>KOG1840|consensus
Probab=99.77 E-value=5.1e-15 Score=144.92 Aligned_cols=258 Identities=19% Similarity=0.157 Sum_probs=188.4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--------hccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcH
Q psy6603 168 FEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQ--------IHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENT 239 (724)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 239 (724)
|....+...++..|...|++++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+..
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e--- 272 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE--- 272 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH---
Confidence 345566666888888888888888888888877 344444555677778888888888777777766411
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhh
Q psy6603 240 LYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEK 319 (724)
Q Consensus 240 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (724)
..
T Consensus 273 ------------------------------~~------------------------------------------------ 274 (508)
T KOG1840|consen 273 ------------------------------EV------------------------------------------------ 274 (508)
T ss_pred ------------------------------Hh------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CChHHH
Q psy6603 320 CKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHT--------PTLIEL 391 (724)
Q Consensus 320 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~ 391 (724)
........+.++..||.+|...|++++|..++++++++. |.-...
T Consensus 275 ---------------------------~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 275 ---------------------------FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred ---------------------------cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 011112223366789999999999999999999998764 345567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcc-----Cccc---hhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCC-hhH
Q psy6603 392 FVTKGRIYKHAGDVLEAYKWLDEAQSL-----DTAD---RYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMEN-LNE 462 (724)
Q Consensus 392 ~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 462 (724)
+..++.++..++++++|..++++++++ .+.+ ..+...+|.++..+|++++|.++++++++........ ...
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 888899999999999999999999887 2223 4567789999999999999999999999854332221 111
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHH
Q psy6603 463 MQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAY 542 (724)
Q Consensus 463 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 542 (724)
+. ....++|..+.+.+++.+|... |.+++.+. ....|.+|+....+.+||.+|..+|++++|+
T Consensus 408 ~~--~~l~~la~~~~~~k~~~~a~~l-------------~~~~~~i~--~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 408 VG--KPLNQLAEAYEELKKYEEAEQL-------------FEEAKDIM--KLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred hh--HHHHHHHHHHHHhcccchHHHH-------------HHHHHHHH--HHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 11 1224479999999999999887 44556666 3344577777788888888888888888888
Q ss_pred HHHHHhhh
Q psy6603 543 EYVRRGLR 550 (724)
Q Consensus 543 ~~~~~al~ 550 (724)
++.++++.
T Consensus 471 ~~~~~~~~ 478 (508)
T KOG1840|consen 471 ELEEKVLN 478 (508)
T ss_pred HHHHHHHH
Confidence 88887774
No 83
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=3.3e-16 Score=146.90 Aligned_cols=231 Identities=11% Similarity=0.049 Sum_probs=193.9
Q ss_pred cccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCH--HH
Q psy6603 4 EHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLG-RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKY--DE 80 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~--~~ 80 (724)
..+.+++|+..++++++ .+|.+..+|..++.++...| ++++++..+++++..+|++..+|+..+.++...|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 35788999999999999 78899999999999999999 689999999999999999999999999999988874 78
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc---CCH----HHHHHHH
Q psy6603 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLL---HDF----DMACNIL 153 (724)
Q Consensus 81 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~~ 153 (724)
++.++.++++.+|+|..+|...+.++...|+++++++.+.++++.+|.+..+|..++.++... |.+ ++++.+.
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999998776 333 3555555
Q ss_pred HHHHHhhccCCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcC----------
Q psy6603 154 EAFRKTQQVTNSYDFEHSELLLYQSMVIQD----SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLG---------- 219 (724)
Q Consensus 154 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g---------- 219 (724)
.+++.. +|+ +..+|.+++.++.. .+...+|++.+.+++...|.++.++..++.++....
T Consensus 207 ~~aI~~---~P~----N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 207 IDAILA---NPR----NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHh---CCC----CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 555444 454 56699999999988 456678999999999999999999999999998643
Q ss_pred --------ChHHHHHHHHHHHHHcCCcHHHHH
Q psy6603 220 --------QYNEAMKHYESLIERNQENTLYYN 243 (724)
Q Consensus 220 --------~~~~A~~~~~~~~~~~p~~~~~~~ 243 (724)
..++|...+..+-+.+|=-..+|.
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred hccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 225566666666444554444443
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.76 E-value=4.9e-15 Score=129.84 Aligned_cols=234 Identities=11% Similarity=0.036 Sum_probs=180.0
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCC-CChhhHHHHHHHHHHH
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNS-YDFEHSELLLYQSMVI 181 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~ 181 (724)
|.-++-.++.++|+..|-.+++.+|...++...+|.++...|..+.|+.+-+... ..|+ .......+...+|.-|
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~----~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL----ESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHHH
Confidence 4444456777778888888888888878888888888888888888876654433 3344 2234556778889999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHH
Q psy6603 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLL 261 (724)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~ 261 (724)
...|-++.|...|........--..+...+..+|....+|++|+..-++..+..|...... +
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e--I---------------- 179 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE--I---------------- 179 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH--H----------------
Confidence 9999999999999988876555577889999999999999999999888887766432210 0
Q ss_pred HHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCC
Q psy6603 262 THYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFS 341 (724)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (724)
T Consensus 180 -------------------------------------------------------------------------------- 179 (389)
T COG2956 180 -------------------------------------------------------------------------------- 179 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q psy6603 342 LQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA 421 (724)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 421 (724)
+..+..++..+....+.+.|+..+.++++.+|+++.+-..+|.+....|+++.|++.++.+++.+|.
T Consensus 180 -------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 180 -------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred -------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 1134466777777889999999999999999999999999999999999999999999999998887
Q ss_pred c-hhhhhhHHHHHHHcCCHHHHHHHHHHhhh
Q psy6603 422 D-RYINSKCAKYMLRANLIKEAEETCSKFTR 451 (724)
Q Consensus 422 ~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 451 (724)
- +.+...+..+|...|+.++....+.++.+
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5 45566667777777777777777776665
No 85
>KOG2376|consensus
Probab=99.76 E-value=1.1e-13 Score=131.64 Aligned_cols=432 Identities=12% Similarity=0.043 Sum_probs=256.2
Q ss_pred HHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH
Q psy6603 104 LLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD 183 (724)
Q Consensus 104 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 183 (724)
..+...|++++|.+...+++...|++..+......++.+.++|++|+.+.+...... ......+..+.|.++
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--------~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--------VINSFFFEKAYCEYR 91 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--------hcchhhHHHHHHHHH
Confidence 344566777888888888888888887777777778888888888875544322111 011122677889999
Q ss_pred cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHH
Q psy6603 184 SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTH 263 (724)
Q Consensus 184 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~ 263 (724)
.+..++|+..++ ..++.+..+....|.+++++|+|++|...|+.+++.+.++.+........-.
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~------------- 155 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV------------- 155 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-------------
Confidence 999999999988 4456667788889999999999999999999998877665543333222100
Q ss_pred HHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6603 264 YISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQ 343 (724)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 343 (724)
.........+.+
T Consensus 156 -----------------------------------------------------------~a~l~~~~~q~v--------- 167 (652)
T KOG2376|consen 156 -----------------------------------------------------------AAALQVQLLQSV--------- 167 (652)
T ss_pred -----------------------------------------------------------HHhhhHHHHHhc---------
Confidence 000000011111
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC-------hHHHHHHHHHHHHHcCCHHHH
Q psy6603 344 DEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHT--------PT-------LIELFVTKGRIYKHAGDVLEA 408 (724)
Q Consensus 344 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~-------~~~~~~~l~~~~~~~g~~~~A 408 (724)
...+ ......+|+.+.++...|+|.+|++.+++++.+. .+ -......++.++..+|+.++|
T Consensus 168 ---~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 168 ---PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred ---cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 1111 2222366788999999999999999999994432 11 123667889999999999999
Q ss_pred HHHHHHHHccCccchhhhhhHHHHHHHcC---CHH--HHHHHHHHhhhcccCcc-CChhHHHHHHHHHHHHHHHHhhcch
Q psy6603 409 YKWLDEAQSLDTADRYINSKCAKYMLRAN---LIK--EAEETCSKFTREGVSAM-ENLNEMQCMWFQTECALAYQRLGRW 482 (724)
Q Consensus 409 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~g---~~~--~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~ 482 (724)
...|...++.+|.|........+-+.... ++. .++..++......+..+ ..+...+.--+..+.+.+....
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--- 320 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 99999999998887543332222222111 111 11222222111000000 0000000000111111111111
Q ss_pred hhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCc-cchHHH
Q psy6603 483 GDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS-HVCWHV 561 (724)
Q Consensus 483 ~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~ 561 (724)
+.-+.+.+.... .-+..|....-.........+...+.+|.+.+....+.+|.+ ..+...
T Consensus 321 -----------------nk~~q~r~~~a~--lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~ 381 (652)
T KOG2376|consen 321 -----------------NKMDQVRELSAS--LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLL 381 (652)
T ss_pred -----------------hhHHHHHHHHHh--CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHH
Confidence 111122222111 222344433333333444444447888888888888888877 447778
Q ss_pred HHHHHhccccHHHHHHHHH--------HHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh--------hh
Q psy6603 562 YGLLQRSDKKYDEAIKCYR--------NALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ--------CM 625 (724)
Q Consensus 562 l~~~~~~~~~~~~A~~~~~--------~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~ 625 (724)
++.+....|+++.|++.+. ...+.. ..|.+...+-.++...++.+.|...+..+...-..+ ..
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 8888888888888888888 333332 345566667777888888888888877755433111 12
Q ss_pred hhhhhHHHHHHHhCChhHHHHHHHHHHHHHh
Q psy6603 626 WFQTECALAYQRLGRWGDTLKKCHEVDRHFS 656 (724)
Q Consensus 626 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 656 (724)
| ..++....+.|+-++|...++++++.++
T Consensus 461 ~--~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 461 M--REAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred H--HHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 2 3455555667888888888888887643
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.76 E-value=4.6e-14 Score=140.37 Aligned_cols=304 Identities=14% Similarity=0.091 Sum_probs=190.7
Q ss_pred cccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhc-----CCH
Q psy6603 4 EHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD-----KKY 78 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~-----g~~ 78 (724)
+.|++++|++.++.... ..++...++-.+|.++.++|++++|...|...++.+|++...+..+..+.... .+.
T Consensus 16 e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred HCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccH
Confidence 34666666666655555 44455556666666666666666666666666666666666655555554221 234
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHH-HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6603 79 DEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGY-RETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFR 157 (724)
Q Consensus 79 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 157 (724)
+.-...|++.....|....+... ...+..-..+... ..++...+.. +-|.....+-.+|....+..-...++..+.
T Consensus 94 ~~~~~~y~~l~~~yp~s~~~~rl-~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 94 EKLLELYDELAEKYPRSDAPRRL-PLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred HHHHHHHHHHHHhCccccchhHh-hcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 44555555555555543322111 1111111122222 2222222222 234444455455554444444444455554
Q ss_pred HhhccCCC----------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHH
Q psy6603 158 KTQQVTNS----------YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKH 227 (724)
Q Consensus 158 ~~~~~~p~----------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 227 (724)
......+. .+.....+++.++..|...|++++|++++++++...|..++.+...|.++...|++.+|...
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~ 250 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA 250 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44322211 11122346688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchh
Q psy6603 228 YESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPL 306 (724)
Q Consensus 228 ~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (724)
++.+-.+++.+.-.....+.. ++.|+.++|...+........+..
T Consensus 251 ~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~---------------------------------- 296 (517)
T PF12569_consen 251 MDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL---------------------------------- 296 (517)
T ss_pred HHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc----------------------------------
Confidence 999999999998888888777 788999999887765533322100
Q ss_pred hhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy6603 307 FVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTP 386 (724)
Q Consensus 307 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 386 (724)
..-....-.|.....|.+|.+.|++..|++.|..+.+...
T Consensus 297 ----------------------------------------~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 297 ----------------------------------------SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred ----------------------------------------cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 0001123356777889999999999999999998887653
No 87
>KOG1840|consensus
Probab=99.74 E-value=1.6e-15 Score=148.38 Aligned_cols=245 Identities=18% Similarity=0.164 Sum_probs=206.3
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh---
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN--------DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW--- 91 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~--- 91 (724)
.+|.-..+...+|..|...|+++.|+..++.+++. .|.-......+|.+|..++++.+|+..|++|+.+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 56777888889999999999999999999999987 4554455666899999999999999999999986
Q ss_pred -----CCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy6603 92 -----EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLR--------PTQRASWIGFAMAYHLLHDFDMACNILEAFRK 158 (724)
Q Consensus 92 -----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 158 (724)
+|.-..++.+||.+|...|++.+|..++++++++. |.-...+..++.++...+++++|..++....+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 23345589999999999999999999999998754 23445778889999999999999999999998
Q ss_pred hhccCCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh--------ccHhhHHHHHHHHHHHcCChHHHHHHHH
Q psy6603 159 TQQVTNS-YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI--------HDKLTVEETYGALKLKLGQYNEAMKHYE 229 (724)
Q Consensus 159 ~~~~~p~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 229 (724)
.....|. ..+..+.....+|.+|..+|++++|.+.+++++... +.....+..+|..+.+.+++.+|...|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 8875555 233677889999999999999999999999999765 2334578899999999999999999999
Q ss_pred HHHHHc-------CCcHHHHHHHHHHhc-cCChHHHHHHHHHHHHh
Q psy6603 230 SLIERN-------QENTLYYNKLVEAKQ-LTNNDDIFQLLTHYISK 267 (724)
Q Consensus 230 ~~~~~~-------p~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~ 267 (724)
+++.+. |+....+.+|+.+|. +|++++|+++.+.++..
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 998763 344567888888865 79999999999888743
No 88
>KOG2047|consensus
Probab=99.73 E-value=3.4e-11 Score=115.94 Aligned_cols=377 Identities=14% Similarity=0.105 Sum_probs=198.0
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHhh--------cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHH
Q psy6603 47 AYEYVRRGLRNDLKSHVCWHVYGLLQRS--------DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRET 118 (724)
Q Consensus 47 A~~~~~~~l~~~p~~~~~~~~lg~~~~~--------~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 118 (724)
-.-+|+++++.-|.+...|+..-..-.. ..-|+.--.+|++++-.--+-+.+|.........+|+...-...
T Consensus 45 ~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~t 124 (835)
T KOG2047|consen 45 RNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRT 124 (835)
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHH
Confidence 3445666666666666665544321111 12244444555555554445555666666666666666666666
Q ss_pred HHHHHHhCCC--chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6603 119 RYQLFMLRPT--QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDR 196 (724)
Q Consensus 119 ~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 196 (724)
|.+++..-|- +...|-.........|-.+-++.+|.++++.. |. ........+...++.++|.+.+..
T Consensus 125 fdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---P~-------~~eeyie~L~~~d~~~eaa~~la~ 194 (835)
T KOG2047|consen 125 FDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---PE-------AREEYIEYLAKSDRLDEAAQRLAT 194 (835)
T ss_pred HHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC---HH-------HHHHHHHHHHhccchHHHHHHHHH
Confidence 6666665553 33455555555555555666666666655544 22 122223345556666666666665
Q ss_pred Hhhhh-------ccHhhHHHHHHHHHHHcCChHH---HHHHHHHHHHHcCCcH-HHHHHHHHH-hccCChHHHHHHHHHH
Q psy6603 197 FKEQI-------HDKLTVEETYGALKLKLGQYNE---AMKHYESLIERNQENT-LYYNKLVEA-KQLTNNDDIFQLLTHY 264 (724)
Q Consensus 197 ~~~~~-------p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~~~~~p~~~-~~~~~l~~~-~~~~~~~~a~~~~~~~ 264 (724)
.+..+ +.+...|..+.....+.-+.-. -...++..+...|+.. ..|..|+.. .+.|.++.|..+|+++
T Consensus 195 vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 195 VLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred hcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 55432 3334445555544444322211 1223444444444432 345555555 3556666666666665
Q ss_pred HHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhH-HhhhchhhHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6603 265 ISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLR-SLYSNTEKCKIIQDLVESYVEALSKTGHFSLQ 343 (724)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 343 (724)
+..--... +|....+.|..--.. .......++ ....+......++-.+..++..+...+-+...
T Consensus 275 i~~v~tvr-------------DFt~ifd~Ya~FEE~--~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 275 IQTVMTVR-------------DFTQIFDAYAQFEES--CVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred HHhheehh-------------hHHHHHHHHHHHHHH--HHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 55432211 111111111100000 000000000 00000111112223333333333322211111
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy6603 344 DEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAID-HTPT-----LIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417 (724)
Q Consensus 344 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 417 (724)
.-...+|....-|. -.+-...|+..+-+..|.+++. .+|. ....|..+|..|...|+.+.|...|+++.+
T Consensus 340 VlLRQn~~nV~eW~----kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWH----KRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHhcCCccHHHHH----hhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 11144555555553 2233446888999999988875 4554 456899999999999999999999999998
Q ss_pred cCccc----hhhhhhHHHHHHHcCCHHHHHHHHHHhhhc
Q psy6603 418 LDTAD----RYINSKCAKYMLRANLIKEAEETCSKFTRE 452 (724)
Q Consensus 418 ~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 452 (724)
..-.. ..++...|..-++..+++.|+.+++.+.-.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 84322 567888899999999999999999998763
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.71 E-value=1.6e-15 Score=140.21 Aligned_cols=192 Identities=15% Similarity=-0.007 Sum_probs=162.1
Q ss_pred CCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH-
Q psy6603 22 PKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH---VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ- 97 (724)
Q Consensus 22 p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~- 97 (724)
|.++..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 46677889999999999999999999999999999999876 56899999999999999999999999999998776
Q ss_pred --HHHHHHHHHHHh--------cchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCC
Q psy6603 98 --IMRDLSLLQIQM--------RDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYD 167 (724)
Q Consensus 98 --~~~~la~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 167 (724)
+++.+|.++... |++++|+..+++++..+|++..++..+..+... ...
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~------------------ 164 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR------------------ 164 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH------------------
Confidence 789999999876 899999999999999999987665443322111 000
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh---ccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q psy6603 168 FEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI---HDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQE 237 (724)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 237 (724)
.......+|..+...|++.+|+..+++++... |..+.++..+|.++...|++++|..+++.+....|+
T Consensus 165 --~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 165 --LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred --HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 11233467889999999999999999999885 457889999999999999999999998888776663
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.71 E-value=8.4e-14 Score=138.33 Aligned_cols=175 Identities=14% Similarity=-0.015 Sum_probs=111.2
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHH
Q psy6603 58 DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWI 134 (724)
Q Consensus 58 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 134 (724)
+|+++.++..+|.++...|+.++|...+.++....|.+ .......+.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 46666666666666666666666666666655555433 334445555666666666666666666666666665554
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-hhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHH
Q psy6603 135 GFAMAYHLLHDFDMACNILEAFRK-TQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGA 213 (724)
Q Consensus 135 ~la~~~~~~g~~~~A~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 213 (724)
. +..+...|++..+.....+... ..+..| .....+..+|.++...|++++|+..++++++..|+++.++..+|.
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENP----DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 3 3344433333322222222221 112222 245566677788888888888888888888888888888888888
Q ss_pred HHHHcCChHHHHHHHHHHHHHcCC
Q psy6603 214 LKLKLGQYNEAMKHYESLIERNQE 237 (724)
Q Consensus 214 ~~~~~g~~~~A~~~~~~~~~~~p~ 237 (724)
++...|++++|+..+++++...|.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCC
Confidence 888888888888888888877653
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.71 E-value=4.4e-14 Score=140.32 Aligned_cols=205 Identities=12% Similarity=0.049 Sum_probs=168.1
Q ss_pred CCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy6603 24 YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS---HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 100 (724)
Q Consensus 24 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 100 (724)
+|+.+.++..+|..+...|+.++|...+.++....|.+ ....+..+.++...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 57888999999999999999999999999988877755 345677799999999999999999999999999998776
Q ss_pred HHHHHHHHhcch----HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHH
Q psy6603 101 DLSLLQIQMRDL----EGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLY 176 (724)
Q Consensus 101 ~la~~~~~~~~~----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~ 176 (724)
. +..+...|+. ..+...+.......|........+|.++...|++++|+..++++.+.. |+ +..++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~---p~----~~~~~~~ 153 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN---PD----DAWAVHA 153 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC----CcHHHHH
Confidence 5 5555555544 444444444334566677788888999999999999999998877765 43 4568889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccHh----hHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q psy6603 177 QSMVIQDSGDLEEAVKHLDRFKEQIHDKL----TVEETYGALKLKLGQYNEAMKHYESLIERNQ 236 (724)
Q Consensus 177 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 236 (724)
+|.++...|++++|+..+++++...|.++ ..+..++.++...|++++|+..|++++...|
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999999876433 2456799999999999999999999976665
No 92
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.69 E-value=6.9e-13 Score=120.58 Aligned_cols=299 Identities=16% Similarity=0.172 Sum_probs=208.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHh
Q psy6603 31 LAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD-NIQIMRDLSLLQIQM 109 (724)
Q Consensus 31 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~la~~~~~~ 109 (724)
...-|..-+..|+|.+|.....+.-+..+....++..-+.+...+|+++.|-.++.++-+..++ .......++.+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 3445677788899999999999988888887777888889999999999999999999998444 355788899999999
Q ss_pred cchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHH
Q psy6603 110 RDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEE 189 (724)
Q Consensus 110 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 189 (724)
|+++.|.....++++..|.++.+.....++|...|+|.+...++.++.+..-.++. ....-+-....| ++.+.++-..
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~-e~~~le~~a~~g-lL~q~~~~~~ 244 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE-EAARLEQQAWEG-LLQQARDDNG 244 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH-HHHHHHHHHHHH-HHHHHhcccc
Confidence 99999999999999999999999999999999999999999999988877644443 000111111111 1222222222
Q ss_pred HH---HHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHH
Q psy6603 190 AV---KHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYIS 266 (724)
Q Consensus 190 A~---~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~ 266 (724)
+. .+.+..-..-..++.+...++.-+...|+.++|.+..+.+++..-+.. ...+.-.+..+++..-++..++.++
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHH
Confidence 22 234333333345577778888888999999999999988888754433 2223333344555555444444444
Q ss_pred hCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy6603 267 KYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEG 346 (724)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 346 (724)
..|+.+
T Consensus 323 ~h~~~p-------------------------------------------------------------------------- 328 (400)
T COG3071 323 QHPEDP-------------------------------------------------------------------------- 328 (400)
T ss_pred hCCCCh--------------------------------------------------------------------------
Confidence 444431
Q ss_pred CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy6603 347 EVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417 (724)
Q Consensus 347 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 417 (724)
..+..||..+.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|..+.++++.
T Consensus 329 ---------~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 ---------LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ---------hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 13446677777777777777777777766665 33556667777777777777777766664
No 93
>KOG4340|consensus
Probab=99.64 E-value=1.7e-12 Score=112.69 Aligned_cols=431 Identities=12% Similarity=0.058 Sum_probs=226.5
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Q psy6603 73 RSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNI 152 (724)
Q Consensus 73 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 152 (724)
.+..+|.+|++++..-.+.+|.+...+..+|.||....++..|..+|++.-...|......+..++.+++.+.+.+|+.+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666777777777655
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6603 153 LEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLI 232 (724)
Q Consensus 153 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 232 (724)
...+.. +|. ...+..-..+.+.+..+++..+....++.-. .++.......|.+..+.|++++|++-|+.++
T Consensus 101 ~~~~~D----~~~---L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 101 AFLLLD----NPA---LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHhcC----CHH---HHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHH
Confidence 443221 111 2334444455566666666666665554221 1345566777777777777777777777777
Q ss_pred HHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhH
Q psy6603 233 ERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLR 311 (724)
Q Consensus 233 ~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 311 (724)
+...-++..-+.++.+ ++.+++..|+++..++++..-...+...+...-. .+++ ..
T Consensus 172 qvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te--------------------giDv-rs-- 228 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE--------------------GIDV-RS-- 228 (459)
T ss_pred hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec--------------------cCch-hc--
Confidence 7766666666666666 6777777777777666654332221111110000 0000 00
Q ss_pred HhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--ChH
Q psy6603 312 SLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTP--TLI 389 (724)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~ 389 (724)
+..-+.... +..+.+....+-++++.|+++.|.+.+..+-.... -+|
T Consensus 229 -----------vgNt~~lh~--------------------Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 229 -----------VGNTLVLHQ--------------------SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred -----------ccchHHHHH--------------------HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 000000000 11111333455567777888887766654322221 145
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHH
Q psy6603 390 ELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQ 469 (724)
Q Consensus 390 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (724)
..+.+++..- ..+++.+...-+.-.+.++|-.+.....+-.++++..-++-|-.++..-.... ..-. .-+.
T Consensus 278 vTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lT------yk~L--~~Yl 348 (459)
T KOG4340|consen 278 VTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLT------YKFL--TPYL 348 (459)
T ss_pred hhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchh------HHHh--hHHH
Confidence 5666665433 34567777777777777777666666677777777777777766654321100 0000 0022
Q ss_pred HHHHHHHH-hhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHh
Q psy6603 470 TECALAYQ-RLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRG 548 (724)
Q Consensus 470 ~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 548 (724)
+++-.++. ..-..++|.+.+..+...+.+. --+-|+++-.. ... + + .....+|++.|+.+
T Consensus 349 y~LLdaLIt~qT~pEea~KKL~~La~~l~~k-LRklAi~vQe~-r~~-~--d--------------d~a~R~ai~~Yd~~ 409 (459)
T KOG4340|consen 349 YDLLDALITCQTAPEEAFKKLDGLAGMLTEK-LRKLAIQVQEA-RHN-R--D--------------DEAIRKAVNEYDET 409 (459)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-Hhc-c--c--------------HHHHHHHHHHHHHH
Confidence 22333332 2334555555554443222111 00111111110 000 0 0 01122344555555
Q ss_pred hhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHH
Q psy6603 549 LRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 597 (724)
Q Consensus 549 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 597 (724)
+++. -.+....++++....+|..+.+.|++..+...++.....+.|
T Consensus 410 LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~WkLNva 455 (459)
T KOG4340|consen 410 LEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVWKLNVA 455 (459)
T ss_pred HHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccceeeeccc
Confidence 5442 234556677777778888888888877776665544333333
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=5.8e-15 Score=122.36 Aligned_cols=127 Identities=16% Similarity=-0.031 Sum_probs=115.8
Q ss_pred HHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q psy6603 11 GLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 90 (724)
Q Consensus 11 A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 90 (724)
-...++++++ .+|. .+..+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++.
T Consensus 12 ~~~~~~~al~--~~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLS--VDPE---TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHH--cCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4567888888 5554 3667899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy6603 91 WEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL 142 (724)
Q Consensus 91 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 142 (724)
++|+++.+++.+|.++...|++++|+..|+++++..|+++..+..++.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888776543
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.63 E-value=4.2e-14 Score=130.73 Aligned_cols=190 Identities=15% Similarity=0.074 Sum_probs=154.7
Q ss_pred cCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchh--
Q psy6603 57 NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI---QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRA-- 131 (724)
Q Consensus 57 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-- 131 (724)
.++..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456677899999999999999999999999999999876 58899999999999999999999999999998776
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q psy6603 132 -SWIGFAMAYHLL--------HDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIH 202 (724)
Q Consensus 132 -~~~~la~~~~~~--------g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 202 (724)
+++.+|.++... |++++|+..++++.+..+.++. ...++..++....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~a~~~~~~~~~-------------------- 163 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY----APDAKKRMDYLRN-------------------- 163 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh----HHHHHHHHHHHHH--------------------
Confidence 688999999876 8899999999988777644332 1122222221110
Q ss_pred cHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCc---HHHHHHHHHH-hccCChHHHHHHHHHHHHhCCC
Q psy6603 203 DKLTVEETYGALKLKLGQYNEAMKHYESLIERNQEN---TLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPK 270 (724)
Q Consensus 203 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~ 270 (724)
........+|.++...|++.+|+..++++++..|+. +.++..++.+ ...|++++|..+++.+...+|+
T Consensus 164 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 164 RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 112234578899999999999999999999997765 5788899998 5689999999999999888774
No 96
>KOG3060|consensus
Probab=99.59 E-value=2.9e-12 Score=108.81 Aligned_cols=184 Identities=16% Similarity=0.114 Sum_probs=156.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHc
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRA 436 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 436 (724)
++-.+..+....|+.+-|..++++.....|++.......|..+...|++++|+++|+..++-+|.|..++..-..+....
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHc
Confidence 34455556677899999999999998888999999999999999999999999999999999999988877666667777
Q ss_pred CCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCC
Q psy6603 437 NLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNP 516 (724)
Q Consensus 437 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 516 (724)
|+.-+|++.+...++
T Consensus 134 GK~l~aIk~ln~YL~----------------------------------------------------------------- 148 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD----------------------------------------------------------------- 148 (289)
T ss_pred CCcHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 777777766665543
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccc---cHHHHHHHHHHHhhhccccHHHH
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK---KYDEAIKCYRNALKWEHDNIQIM 593 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~ 593 (724)
.++.+.++|..++.+|...|++++|.-++++++-..|.++..+..+|.+++-.| ++.-|.++|.++++++|.+..++
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 556788899999999999999999999999999999999999999998888766 67889999999999999998888
Q ss_pred HHHHHHHHHhhh
Q psy6603 594 RDLSLLQIQMRD 605 (724)
Q Consensus 594 ~~l~~~~~~~~~ 605 (724)
+.+-.+-...-+
T Consensus 229 ~GI~lc~~~la~ 240 (289)
T KOG3060|consen 229 FGIYLCGSALAQ 240 (289)
T ss_pred HHHHHHHHHHHH
Confidence 887665554443
No 97
>KOG2053|consensus
Probab=99.59 E-value=2.1e-09 Score=108.23 Aligned_cols=232 Identities=16% Similarity=0.188 Sum_probs=163.7
Q ss_pred ccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHH
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAI 82 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 82 (724)
.+.++|.+|+..+.++++ ++|+...+....|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|.
T Consensus 20 ld~~qfkkal~~~~kllk--k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLK--KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 456899999999999999 899999999999999999999999998888877778888888999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHH-HcCCHHHHHH-----HHHHH
Q psy6603 83 KCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYH-LLHDFDMACN-----ILEAF 156 (724)
Q Consensus 83 ~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~-----~~~~~ 156 (724)
.+|++++..+|. ...+..+-.+|.+.+.|.+-.+.--+..+..|.++-.......+.. .....+.... +-+++
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 999999999999 8888888899999999888777777777788887754443333333 2222222211 11111
Q ss_pred HHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-Hhhh-hccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy6603 157 RKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDR-FKEQ-IHDKLTVEETYGALKLKLGQYNEAMKHYESLIER 234 (724)
Q Consensus 157 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~-~~~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (724)
.+..-..++......++. ..-.++..+|++++|...+.. ..+. .+.+...-......+...+++.+-.+...+++..
T Consensus 177 ~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 111111111011122222 223456667778888877733 2222 2333444455667777778888877777777777
Q ss_pred cCCc
Q psy6603 235 NQEN 238 (724)
Q Consensus 235 ~p~~ 238 (724)
.+++
T Consensus 256 ~~Dd 259 (932)
T KOG2053|consen 256 GNDD 259 (932)
T ss_pred CCcc
Confidence 7766
No 98
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.57 E-value=1.1e-13 Score=114.70 Aligned_cols=126 Identities=8% Similarity=0.017 Sum_probs=112.5
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC
Q psy6603 47 AYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLR 126 (724)
Q Consensus 47 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 126 (724)
-...|+++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356899999999985 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHH
Q psy6603 127 PTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQ 182 (724)
Q Consensus 127 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 182 (724)
|+++.+++.+|.++...|++++|+..|+.+++..+. ++..+..++.+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~-------~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA-------DASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHH
Confidence 999999999999999999999999999998877644 3445555555443
No 99
>KOG4340|consensus
Probab=99.55 E-value=5.3e-12 Score=109.66 Aligned_cols=254 Identities=13% Similarity=0.098 Sum_probs=176.3
Q ss_pred ccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHH
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAI 82 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 82 (724)
+...+|..|++++..-.+ .+|.+-..+..+|.||+...++..|.++|++.-...|......+..+..+++.+.+.+|+
T Consensus 21 I~d~ry~DaI~~l~s~~E--r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELE--RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 455788899999888888 677788899999999999999999999999999999988888778888899999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 83 KCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRP--TQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 83 ~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
.....+...+.-.......-+.+..+.+++..+....+ .-| +........|.+.++.|+++.|++-|+.+.+..
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH----hccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 88776554211112234444555556667666664443 334 355667777888888888888888777777766
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh----ccH-------------------------hhHHHHH
Q psy6603 161 QVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI----HDK-------------------------LTVEETY 211 (724)
Q Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----p~~-------------------------~~~~~~l 211 (724)
.-.|. .-+.++.++++.|+++.|++...+.++.. |+- ..+....
T Consensus 175 Gyqpl-------lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 175 GYQPL-------LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred CCCch-------hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 55443 56677778888888888888777766532 211 2345556
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHc--CCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q psy6603 212 GALKLKLGQYNEAMKHYESLIERN--QENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYP 269 (724)
Q Consensus 212 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ 269 (724)
+.++.+.|+++.|.+.+..+--.. .-+|....+++..-..+++.+...-+.-.+...|
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC
Confidence 677778888887776554321111 1134556666655555666666666666666666
No 100
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=7.9e-13 Score=113.69 Aligned_cols=183 Identities=17% Similarity=0.107 Sum_probs=163.3
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHH
Q psy6603 369 GDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSK 448 (724)
Q Consensus 369 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 448 (724)
.+...+...+-.....+|++..+ ..++..+...|+-+.+..+..++..-.|.+..+...+|+...+.|++.+|+..+.+
T Consensus 47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34444777777778889999988 99999999999999999999999988999988888889999999999999999888
Q ss_pred hhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhh
Q psy6603 449 FTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMK 528 (724)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 528 (724)
+.. ..|.+.++|..+
T Consensus 126 A~~-----------------------------------------------------------------l~p~d~~~~~~l 140 (257)
T COG5010 126 AAR-----------------------------------------------------------------LAPTDWEAWNLL 140 (257)
T ss_pred Hhc-----------------------------------------------------------------cCCCChhhhhHH
Confidence 875 445677799999
Q ss_pred hhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhh
Q psy6603 529 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG 608 (724)
Q Consensus 529 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 608 (724)
|.+|.+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..+..+|+.+....|+++.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q psy6603 609 YREGVSAME 617 (724)
Q Consensus 609 a~~~~~~~~ 617 (724)
|......-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 888766543
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.54 E-value=7.6e-13 Score=137.65 Aligned_cols=226 Identities=12% Similarity=0.053 Sum_probs=187.7
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH------
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI------ 96 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~------ 96 (724)
-+|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++.+.+++.++... .++..-+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 46788899999999999999999999999999999999999999999999999998887766 6666555554
Q ss_pred -------------HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q psy6603 97 -------------QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVT 163 (724)
Q Consensus 97 -------------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 163 (724)
.+++.+|.||-++|+.++|...|+++++.+|+++.+..++|..|... +.++|+.++.+++..
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 89999999999999999999999999999999999999999999999 999999988876543
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhH--------------------HHHHHHHHHHcCChHH
Q psy6603 164 NSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTV--------------------EETYGALKLKLGQYNE 223 (724)
Q Consensus 164 p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--------------------~~~la~~~~~~g~~~~ 223 (724)
+...+++.++.++..+.+..+|++.+. +.-+-..|...++|++
T Consensus 179 -----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 179 -----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred -----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 455567777777777777777776443 2223367788889999
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhcc---------------------CChHHHHHHHHHHHHhCCCCC
Q psy6603 224 AMKHYESLIERNQENTLYYNKLVEAKQL---------------------TNNDDIFQLLTHYISKYPKAT 272 (724)
Q Consensus 224 A~~~~~~~~~~~p~~~~~~~~l~~~~~~---------------------~~~~~a~~~~~~~~~~~~~~~ 272 (724)
++..++.+++.+|++..+...++.+++. .++..++..|++.+...+.+.
T Consensus 242 ~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 242 VIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNF 311 (906)
T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCE
Confidence 9999999999999998888888877521 234667777777776666543
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.53 E-value=3.9e-13 Score=117.84 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=112.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-HHhcc--hHHHHH
Q psy6603 41 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ-IQMRD--LEGYRE 117 (724)
Q Consensus 41 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~-~~~~~--~~~A~~ 117 (724)
.++.++++..+++++..+|++...|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+ .++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677889999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCC
Q psy6603 118 TRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 118 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p 164 (724)
.++++++.+|+++.++..+|..+...|++++|+..++++++..+.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999887775433
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.53 E-value=4.6e-13 Score=117.39 Aligned_cols=126 Identities=10% Similarity=0.050 Sum_probs=117.8
Q ss_pred ccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH-hhcCC--HHHH
Q psy6603 5 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQ-RSDKK--YDEA 81 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~-~~~g~--~~~A 81 (724)
.++.++++..+++.+. .+|++++.|..+|.++...|++++|+..|+++++.+|+++..+..+|.++ ...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4677899999999999 78899999999999999999999999999999999999999999999975 67787 5999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhH
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRAS 132 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 132 (724)
...++++++.+|+++.++..+|..+...|++++|+..|+++++..|.+..-
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 999999999999999999999999999999999999999999999886543
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.52 E-value=8.3e-12 Score=130.06 Aligned_cols=267 Identities=12% Similarity=0.027 Sum_probs=194.6
Q ss_pred HcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHH
Q psy6603 56 RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIG 135 (724)
Q Consensus 56 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 135 (724)
..+|.+..+|..++..+...|++++|+...+.+++..|+....++.+|.++.+.+++.++.-. .++..-+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~------- 95 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ------- 95 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc-------
Confidence 356888888999999998899999999999999999999999999999988888887776654 44444333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHH
Q psy6603 136 FAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALK 215 (724)
Q Consensus 136 la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 215 (724)
..++ .++..+...+... + .+..+++.+|.||.++|+.++|...++++++.+|+++.++.++|..|
T Consensus 96 -------~~~~-~~ve~~~~~i~~~---~----~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 96 -------NLKW-AIVEHICDKILLY---G----ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred -------ccch-hHHHHHHHHHHhh---h----hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 2333 2222222211111 1 24458889999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHH
Q psy6603 216 LKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYL 295 (724)
Q Consensus 216 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (724)
... +.++|..++.+++.. .+..+++..+..++.+.+...|.....
T Consensus 161 ae~-dL~KA~~m~~KAV~~-------------~i~~kq~~~~~e~W~k~~~~~~~d~d~--------------------- 205 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR-------------FIKKKQYVGIEEIWSKLVHYNSDDFDF--------------------- 205 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH-------------HHhhhcchHHHHHHHHHHhcCcccchH---------------------
Confidence 999 999999999999876 344567788888888888888876321
Q ss_pred HhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHH
Q psy6603 296 RHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKAL 375 (724)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 375 (724)
...........+ .....+.++.-+-..|...++|++++
T Consensus 206 ---------------------------f~~i~~ki~~~~---------------~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 206 ---------------------------FLRIERKVLGHR---------------EFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred ---------------------------HHHHHHHHHhhh---------------ccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 000000000000 00111124446667788889999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHccCccch
Q psy6603 376 NYINAAIDHTPTLIELFVTKGRIYKHA--------------------GDVLEAYKWLDEAQSLDTADR 423 (724)
Q Consensus 376 ~~~~~~l~~~p~~~~~~~~l~~~~~~~--------------------g~~~~A~~~~~~a~~~~~~~~ 423 (724)
.+++.+++.+|++..+...++.+|... ..+..|+..|++.+..++.+.
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNF 311 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCE
Confidence 999999999999999999999988622 245677777777777776653
No 105
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=9.9e-11 Score=106.80 Aligned_cols=279 Identities=18% Similarity=0.158 Sum_probs=208.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-hhhhhhHHHHHHHcCCHH
Q psy6603 362 AQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTAD-RYINSKCAKYMLRANLIK 440 (724)
Q Consensus 362 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~g~~~ 440 (724)
|..-...|+|.+|.+...+.-+..+...-.+..-+..--.+|+++.|-.++.++-+..+++ ..+....+..+...|+++
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 3334456888888888888888877777777777888888888888888888888885544 445566788888888888
Q ss_pred HHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhh------------------Hhhhh-hc
Q psy6603 441 EAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDR------------------KCYEH-KQ 501 (724)
Q Consensus 441 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~------------------~~~~~-~~ 501 (724)
.|..-..++.+..|.....+.. ...+|.+.|++.+...++.++.. .+... .+
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrL---------a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRL---------ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHH---------HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888877665443322 36777888888888777766651 00011 11
Q ss_pred ---hHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHH
Q psy6603 502 ---YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKC 578 (724)
Q Consensus 502 ---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 578 (724)
.+.-....+.+.. +-..++..-..++.-+.++|+.++|.++.+.+++..-+.. +..+ .-...-++...=++.
T Consensus 242 ~~~~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~-~~~l~~~d~~~l~k~ 316 (400)
T COG3071 242 DNGSEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRL-IPRLRPGDPEPLIKA 316 (400)
T ss_pred cccchHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHH-HhhcCCCCchHHHHH
Confidence 1111112222211 1122456778888889999999999999999998754433 2222 223457788889999
Q ss_pred HHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHh
Q psy6603 579 YRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFS 656 (724)
Q Consensus 579 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 656 (724)
.++.++..|+++..+..||.++.+.+.|.+|.+.++...+..++...| ..+|.++.+.|+..+|-+.+++++-.+.
T Consensus 317 ~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~--~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 317 AEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDY--AELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhH--HHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999988777 6699999999999999999999985543
No 106
>KOG3060|consensus
Probab=99.50 E-value=2e-11 Score=103.86 Aligned_cols=200 Identities=14% Similarity=-0.005 Sum_probs=167.6
Q ss_pred CCHHHHHHHHHHHHH------cCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHH
Q psy6603 42 GRKEEAYEYVRRGLR------NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGY 115 (724)
Q Consensus 42 g~~~~A~~~~~~~l~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A 115 (724)
.+.++-+++....+. ..|+....+-....+....|+.+-|..++++.....|++..+...-|..+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 344555555555543 23443444555567777789999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6603 116 RETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLD 195 (724)
Q Consensus 116 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 195 (724)
+++|+..++.+|.+...+-....+...+|+--+|++.+..+.+.+.. +.++|..++.+|...|+|++|.-+++
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-------D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-------DQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999999999999988888888999999999999999988843 56799999999999999999999999
Q ss_pred HHhhhhccHhhHHHHHHHHHHHcCC---hHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy6603 196 RFKEQIHDKLTVEETYGALKLKLGQ---YNEAMKHYESLIERNQENTLYYNKLVEA 248 (724)
Q Consensus 196 ~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 248 (724)
+++-..|.++..+..+|.+++-+|. +.-|.++|.++++++|.+...++.+..+
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 9999999999999999999888774 5678999999999999887777766554
No 107
>KOG1130|consensus
Probab=99.50 E-value=1.3e-12 Score=118.57 Aligned_cols=277 Identities=13% Similarity=0.139 Sum_probs=173.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCchh----HHHHHHHHHhhcCCHHHHHHHHHHHHhh------CCCcHHHHH
Q psy6603 31 LAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV----CWHVYGLLQRSDKKYDEAIKCYRNALKW------EHDNIQIMR 100 (724)
Q Consensus 31 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~ 100 (724)
+..-|.-+++.|+....+.+|+.+++...++.. +|..+|.+|+..++|++|+++...-+.+ .-..+.+.-
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 445677889999999999999999998776643 4788899999999999999876543332 223345667
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCC------CchhHHHHHHHHHHHcCCH--------------------HHHHHHHH
Q psy6603 101 DLSLLQIQMRDLEGYRETRYQLFMLRP------TQRASWIGFAMAYHLLHDF--------------------DMACNILE 154 (724)
Q Consensus 101 ~la~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~ 154 (724)
+||.++-.+|.+++|+.+..+-+.+.. ....+++++|.+|...|+. +.|.+.|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 889999999999999988877665432 2446889999999887753 22222222
Q ss_pred HHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH------hhHHHHHHHHHHHcCChHHHHHHH
Q psy6603 155 AFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK------LTVEETYGALKLKLGQYNEAMKHY 228 (724)
Q Consensus 155 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 228 (724)
.-++......+ ......++-.+|..|+-.|+|+.|+..-+.-+.+.... -.++.++|.++.-.|+++.|++.|
T Consensus 180 eNL~l~~~lgD-r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY 258 (639)
T KOG1130|consen 180 ENLELSEKLGD-RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY 258 (639)
T ss_pred HHHHHHHHhhh-HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence 22222111110 11122344445555555556666655555444433211 224555555555555555555555
Q ss_pred HHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhh
Q psy6603 229 ESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFV 308 (724)
Q Consensus 229 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (724)
+..+.+.-
T Consensus 259 K~tl~LAi------------------------------------------------------------------------ 266 (639)
T KOG1130|consen 259 KLTLNLAI------------------------------------------------------------------------ 266 (639)
T ss_pred HHHHHHHH------------------------------------------------------------------------
Confidence 55443210
Q ss_pred hhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--
Q psy6603 309 NLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTP-- 386 (724)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-- 386 (724)
+.......+...|.||..|.-..++++|+.++.+-+.+..
T Consensus 267 --------------------------------------elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 267 --------------------------------------ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL 308 (639)
T ss_pred --------------------------------------HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001111122456777778777888888888887766543
Q ss_pred ----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy6603 387 ----TLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL 418 (724)
Q Consensus 387 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 418 (724)
....++..+|..+...|..++|+.+.+..+++
T Consensus 309 ~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 309 EDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 24557788888888888888888887777665
No 108
>KOG1130|consensus
Probab=99.49 E-value=1.8e-12 Score=117.65 Aligned_cols=290 Identities=16% Similarity=0.129 Sum_probs=190.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHH
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAIDHTPTLI----ELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLR 435 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 435 (724)
.-|.-+++.|+....+.+|+.+++...++. .+|..+|..|...++|++|+++-..=+.+ ...++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltl-------ar~lg----- 89 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTL-------ARLLG----- 89 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHH-------HHHhc-----
Confidence 346667777888888888888887765532 34555666666666666665543322111 00000
Q ss_pred cCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcC
Q psy6603 436 ANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTN 515 (724)
Q Consensus 436 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 515 (724)
.+.-+|.. .-++|..+.-+|.|++|+.++..- .+-|.++-+.+..
T Consensus 90 -dklGEAKs------------------------sgNLGNtlKv~G~fdeA~~cc~rh---------Ld~areLgDrv~e- 134 (639)
T KOG1130|consen 90 -DKLGEAKS------------------------SGNLGNTLKVKGAFDEALTCCFRH---------LDFARELGDRVLE- 134 (639)
T ss_pred -chhccccc------------------------cccccchhhhhcccchHHHHHHHH---------hHHHHHHhHHHhh-
Confidence 01111110 012677777777777777665533 2223333233322
Q ss_pred CCCCchhHHHHhhhhHhhhcCC--------------------hHHHHHHHHHhhhcCCCc------cchHHHHHHHHhcc
Q psy6603 516 PKYAEHGETLAMKGLTLNCLGR--------------------KEEAYEYVRRGLRNDLKS------HVCWHVYGLLQRSD 569 (724)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~ 569 (724)
..+++++|.+|...|+ ++.|.++|..-+++.... ..++-++|..|+-+
T Consensus 135 ------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL 208 (639)
T KOG1130|consen 135 ------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL 208 (639)
T ss_pred ------hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee
Confidence 3488889998887764 344555555555543222 23788899999999
Q ss_pred ccHHHHHHHHHHHhhhcccc------HHHHHHHHHHHHHhhhHhhHHHHHHHHHhhh----h-hhhhhhhhhHHHHHHHh
Q psy6603 570 KKYDEAIKCYRNALKWEHDN------IQIMRDLSLLQIQMRDLEGYREGVSAMENLN----E-MQCMWFQTECALAYQRL 638 (724)
Q Consensus 570 ~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~la~~~~~~ 638 (724)
|+|+.|+..-+.=+.+.... ..++.+||+++.-.|+++.|.+.|+....+. . ...+-..+.||..|...
T Consensus 209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll 288 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL 288 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH
Confidence 99999999988877765433 3688899999999999999999998754332 1 11333336799999999
Q ss_pred CChhHHHHHHHHHHHHHhhhhcccchhHHHHHhhhhHHHHHHHHhHHhhhcCChHHHHHHHHHHHHHHHhhcCC
Q psy6603 639 GRWGDTLKKCHEVDRHFSEIIEDQFDFHTYCMRKMTLRSYVRLLRLEDVLRSHPFYYTAARCAIQVYLRLHDRP 712 (724)
Q Consensus 639 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 712 (724)
.++++||.++.+-+.+-++.. -|.+.+|+++.+|.--.+|-.|..-..-+...-++-+.+||.+
T Consensus 289 ~e~~kAI~Yh~rHLaIAqeL~----------DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 289 KEVQKAITYHQRHLAIAQELE----------DRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999998887644332 3456678888888888888888766666777788888899976
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.48 E-value=8.4e-10 Score=124.45 Aligned_cols=393 Identities=12% Similarity=-0.011 Sum_probs=239.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHc
Q psy6603 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFM-LRPTQRASWIGFAMAYHLL 143 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~ 143 (724)
+...+..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+-. ....++......+.++...
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 344466677788888888765544211 11122344556666777887776666544311 1122344556778888899
Q ss_pred CCHHHHHHHHHHHHHhhccCC-C-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH-----hhHHHHHHHHHH
Q psy6603 144 HDFDMACNILEAFRKTQQVTN-S-YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK-----LTVEETYGALKL 216 (724)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~~p-~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~ 216 (724)
|++++|...+..+.......+ . ...........++.++...|++++|...+++++...|.. ..+...+|.++.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 999999998888766543221 0 111234455556777788888888888888887644332 124455666777
Q ss_pred HcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHH
Q psy6603 217 KLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLR 296 (724)
Q Consensus 217 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (724)
..|++++|...+++++......
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~---------------------------------------------------------- 524 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQH---------------------------------------------------------- 524 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhh----------------------------------------------------------
Confidence 7777777777777766542210
Q ss_pred hhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHH
Q psy6603 297 HGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALN 376 (724)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 376 (724)
.+.....+++..++.++...|++++|..
T Consensus 525 ----------------------------------------------------g~~~~~~~~~~~la~~~~~~G~~~~A~~ 552 (903)
T PRK04841 525 ----------------------------------------------------DVYHYALWSLLQQSEILFAQGFLQAAYE 552 (903)
T ss_pred ----------------------------------------------------cchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0111112244577888888899999999
Q ss_pred HHHHHHhcCC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc-----chhhhhhHHHHHHHcCCHHHHH
Q psy6603 377 YINAAIDHTP--------TLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA-----DRYINSKCAKYMLRANLIKEAE 443 (724)
Q Consensus 377 ~~~~~l~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~g~~~~A~ 443 (724)
.+++++.... .....+..+|.++...|++++|...+.+++..... .......++.++...|++++|.
T Consensus 553 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 632 (903)
T PRK04841 553 TQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNAR 632 (903)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9888876521 12334557788888889999999999888775221 1233445677888889999998
Q ss_pred HHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcC-CCCCc-h
Q psy6603 444 ETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTN-PKYAE-H 521 (724)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~-~ 521 (724)
..+..+.............. ..........+...|+.+.|.. ........ +..+. .
T Consensus 633 ~~l~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~--------------------~l~~~~~~~~~~~~~~ 690 (903)
T PRK04841 633 RYLNRLENLLGNGRYHSDWI--ANADKVRLIYWQMTGDKEAAAN--------------------WLRQAPKPEFANNHFL 690 (903)
T ss_pred HHHHHHHHHHhcccccHhHh--hHHHHHHHHHHHHCCCHHHHHH--------------------HHHhcCCCCCccchhH
Confidence 88888765322111000000 0000001122223444444433 33222111 01110 1
Q ss_pred hHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCC------ccchHHHHHHHHhccccHHHHHHHHHHHhhhccccH
Q psy6603 522 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK------SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 522 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 590 (724)
...+..++.++...|++++|...+++++..... ...++..+|.++...|+.++|...+.+++++.....
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 123567888899999999999999998875221 223677889999999999999999999998775543
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.48 E-value=1.4e-12 Score=108.65 Aligned_cols=119 Identities=17% Similarity=0.087 Sum_probs=104.2
Q ss_pred HHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q psy6603 13 KFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE 92 (724)
Q Consensus 13 ~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 92 (724)
..+++++. .+|.+....+.+|..+...|++++|...+++++..+|.++.+|..+|.++...|++++|+..|++++..+
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677788 6677888888999999999999999999999999899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHH
Q psy6603 93 HDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133 (724)
Q Consensus 93 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 133 (724)
|+++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999999999999999998876643
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.47 E-value=9.4e-12 Score=107.18 Aligned_cols=175 Identities=14% Similarity=0.040 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC
Q psy6603 47 AYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLR 126 (724)
Q Consensus 47 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 126 (724)
+...+-+....+|++..+ ..+...+...|+-+.+..+..++....|.+...+..+|......|++..|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444444445556665555 5556666666666666666666555566666655556666666666666666666666666
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhh
Q psy6603 127 PTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLT 206 (724)
Q Consensus 127 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 206 (724)
|++..+|..+|.+|.+.|++++|...|.++.+..+.+| .+..++|..+.-.|+++.|..++..+....+.+..
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p-------~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP-------SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc-------hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 66666666666666666666666665555555553333 35555666666666666666666666655555666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q psy6603 207 VEETYGALKLKLGQYNEAMKHYE 229 (724)
Q Consensus 207 ~~~~la~~~~~~g~~~~A~~~~~ 229 (724)
+..+++.+....|++++|.....
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhcc
Confidence 66666666666666666655443
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.47 E-value=3e-12 Score=132.71 Aligned_cols=148 Identities=10% Similarity=-0.026 Sum_probs=138.7
Q ss_pred HHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q psy6603 11 GLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 90 (724)
Q Consensus 11 A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 90 (724)
++.-+..... .+|.+++++..+|.+..+.|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus 71 ~~~~~~~~~~--~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 71 ALPELLDYVR--RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred hHHHHHHHHH--hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 3333344444 67888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 91 WEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 91 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
.+|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++....
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999988776
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=5.1e-10 Score=126.22 Aligned_cols=87 Identities=15% Similarity=-0.004 Sum_probs=54.7
Q ss_pred HhcCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc------chhhhhhHHHHHHH
Q psy6603 366 DHLGDTMKALNYINAAIDHTPTLI----ELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA------DRYINSKCAKYMLR 435 (724)
Q Consensus 366 ~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~~~~ 435 (724)
...|+.+.|..++.......+... ..+..++.++...|++++|...+++++..... ...+...++.++..
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 345777777777666544322211 12456777777777777777777777765211 12345566777777
Q ss_pred cCCHHHHHHHHHHhhhc
Q psy6603 436 ANLIKEAEETCSKFTRE 452 (724)
Q Consensus 436 ~g~~~~A~~~~~~~~~~ 452 (724)
.|+.++|...+.+++..
T Consensus 744 ~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 744 QGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 78888888877777763
No 114
>KOG0553|consensus
Probab=99.44 E-value=1.6e-12 Score=114.05 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy6603 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 107 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 107 (724)
++.+-..|.-+.+.++|.+|+..|.+||.++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 46677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy6603 108 QMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDF 146 (724)
Q Consensus 108 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 146 (724)
.+|++++|+..|+++++++|++...+..|..+-...++.
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998877776554444433
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.44 E-value=4.6e-12 Score=101.69 Aligned_cols=103 Identities=16% Similarity=0.032 Sum_probs=96.2
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 104 (724)
++..+.++.+|..++..|++++|...|+-....+|.+...|+.||.++..+|++++|+..|.+++.++|+++.+++.+|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHHHHhCC
Q psy6603 105 LQIQMRDLEGYRETRYQLFMLRP 127 (724)
Q Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~p 127 (724)
|++..|+.+.|.+.|+.++...-
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999988763
No 116
>KOG1128|consensus
Probab=99.43 E-value=9.1e-12 Score=121.98 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=75.7
Q ss_pred HHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHh
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 603 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 603 (724)
+...+|......+++.++.+.++..++++|-....|+.+|.+..+.+++..|.++|..++.++|++.+++.+++..|+..
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 34444444455556666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHh
Q psy6603 604 RDLEGYREGVSAMENLNEMQ-CMWFQTECALAYQRLGRWGDTLKKCHEVDRHFS 656 (724)
Q Consensus 604 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 656 (724)
|+-.+|...++.+.+.+-.+ ..|.++.+ +....|.+++|++.|+++++.-.
T Consensus 567 ~~k~ra~~~l~EAlKcn~~~w~iWENyml--vsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 567 KKKKRAFRKLKEALKCNYQHWQIWENYML--VSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCCCeeeechhh--hhhhcccHHHHHHHHHHHHHhhh
Confidence 66666666666555555332 44544444 55556666666666665555433
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.43 E-value=1.1e-11 Score=128.49 Aligned_cols=190 Identities=9% Similarity=-0.071 Sum_probs=157.9
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHH
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 596 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 596 (724)
.+|.+++++.++|.+..+.|++++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|+++.++..+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchhHHHHHhhhhH
Q psy6603 597 SLLQIQMRDLEGYREGVSAMENLNEMQ-CMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEIIEDQFDFHTYCMRKMTL 675 (724)
Q Consensus 597 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (724)
|.++.++|++++|.+.|+.+...+|.. ..| ..+|.++...|+.++|...|+++++...+-. ..+..+.-.....
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~--~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ 235 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGY--VGWAQSLTRRGALWRARDVLQAGLDAIGDGA---RKLTRRLVDLNAD 235 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhhCcch---HHHHHHHHHHHHH
Confidence 999999999999999999999866553 666 6688899999999999999999998755332 1223333333333
Q ss_pred HHHHHHHhHHhhhcCChHHHHHHHHHHHHHHHhhcC
Q psy6603 676 RSYVRLLRLEDVLRSHPFYYTAARCAIQVYLRLHDR 711 (724)
Q Consensus 676 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 711 (724)
.+.+.-...|+-.+..|-..-+++.++.-|-+...+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (694)
T PRK15179 236 LAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNA 271 (694)
T ss_pred HHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCcc
Confidence 333343444556677788888888888777665544
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.40 E-value=5e-11 Score=111.89 Aligned_cols=153 Identities=14% Similarity=0.035 Sum_probs=84.8
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy6603 59 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAM 138 (724)
Q Consensus 59 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 138 (724)
|....+++..+..++..|++++|...+...+...|+|+..+...+.++...|+..+|.+.+++++..+|..+..+..+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45555555555555555666666666665555556665555555666666666666666666666666655555555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHc
Q psy6603 139 AYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKL 218 (724)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 218 (724)
++.+.|++.+|+..++......+. ++..|..++..|..+|+..+|.. ..+..+...
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~-------dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~ 438 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPE-------DPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALA 438 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCC-------CchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhC
Confidence 666666666555555555444422 22355555555555555433322 234444455
Q ss_pred CChHHHHHHHHHHHHHc
Q psy6603 219 GQYNEAMKHYESLIERN 235 (724)
Q Consensus 219 g~~~~A~~~~~~~~~~~ 235 (724)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 55555555555555544
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.39 E-value=9.6e-12 Score=103.60 Aligned_cols=115 Identities=14% Similarity=0.068 Sum_probs=109.0
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Q psy6603 49 EYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128 (724)
Q Consensus 49 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 128 (724)
..+++++..+|++....+.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|...+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q psy6603 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVT 163 (724)
Q Consensus 129 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 163 (724)
++..++.+|.++...|++++|+..++.+.+..+.+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999888776433
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.39 E-value=2e-11 Score=98.02 Aligned_cols=111 Identities=10% Similarity=-0.009 Sum_probs=103.9
Q ss_pred HHcC-CCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHH
Q psy6603 55 LRND-LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133 (724)
Q Consensus 55 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 133 (724)
.... ++.-...+.+|..++..|++++|...|+.+...+|.++..|++||.++..+|++++|+..|.+++.++|+++.++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3556 777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhccCCC
Q psy6603 134 IGFAMAYHLLHDFDMACNILEAFRKTQQVTNS 165 (724)
Q Consensus 134 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 165 (724)
.+.|.++...|+.+.|.+.|+.++......|.
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99999999999999999999998888765554
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.37 E-value=3.3e-11 Score=112.07 Aligned_cols=249 Identities=13% Similarity=0.068 Sum_probs=148.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHH
Q psy6603 363 QHYDHLGDTMKALNYINAAIDHTP-TLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKE 441 (724)
Q Consensus 363 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~ 441 (724)
..++..|+|..++.-++ ....+| ...+....+.+++..+|+++..+.-....- .| .......++..+...++-+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~-~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SP-ELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SC-CCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--Ch-hHHHHHHHHHHHhCccchHH
Confidence 34556799999997776 233333 345677788899999999887665443211 22 22333445555554456667
Q ss_pred HHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh---------hHhhhhhchHHHHHHHHHH
Q psy6603 442 AEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVD---------RKCYEHKQYKNGLKFAKQI 512 (724)
Q Consensus 442 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~~A~~~~~~~ 512 (724)
++..++..+....... + .++..-.|.++...|++++|++.+.... ..+...++++.|.+.++.+
T Consensus 85 ~l~~l~~~~~~~~~~~---~----~~~~~~~A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 85 ALEELKELLADQAGES---N----EIVQLLAATILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HHHHHHHCCCTS---C---H----HHHHHHHHHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccc---c----HHHHHHHHHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776666554322110 0 1122336788888999999988877542 2344557777777777776
Q ss_pred hcCCCCCchhHHHHhhhhHhhhcC--ChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccH
Q psy6603 513 LTNPKYAEHGETLAMKGLTLNCLG--RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 513 ~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 590 (724)
... +.+..-+....+++....| .+.+|...|+...+..|.++..++.++.++..+|+|++|.+.+.++++.+|+++
T Consensus 158 ~~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 158 QQI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp HCC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred Hhc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 553 2233333333344444444 477777777777766666777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhhhH-hhHHHHHHHHHhhhhhhh
Q psy6603 591 QIMRDLSLLQIQMRDL-EGYREGVSAMENLNEMQC 624 (724)
Q Consensus 591 ~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 624 (724)
++..+++.+....|+. +.+.+.+..+....|.++
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 7777777777777776 445556666666655543
No 122
>KOG1128|consensus
Probab=99.36 E-value=3e-11 Score=118.46 Aligned_cols=227 Identities=13% Similarity=0.060 Sum_probs=190.1
Q ss_pred CCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy6603 22 PKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 101 (724)
Q Consensus 22 p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 101 (724)
|..|+....-..++..+...|-...|+.+|++ ...|-....||...|+..+|.....+-++ .|.++..|..
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~ 462 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCL 462 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHH
Confidence 34566667778899999999999999999997 45677788899999999999999988888 7777888888
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH
Q psy6603 102 LSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVI 181 (724)
Q Consensus 102 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 181 (724)
+|.+....--+++|.++.+.. +..+...+|......++|+++.+.++...+..+. ....|+.+|.+.
T Consensus 463 LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-------q~~~wf~~G~~A 529 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPL-------QLGTWFGLGCAA 529 (777)
T ss_pred hhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-------chhHHHhccHHH
Confidence 888776666666666665443 3346677777778889999999998886665533 556999999999
Q ss_pred HHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHH
Q psy6603 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQL 260 (724)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~ 260 (724)
.+.++++.|.+.|...+...|++..+|.+++.+|.+.|+-.+|...+.++++-+-++...|.+...+ ...|.+++|++.
T Consensus 530 Lqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888888887777 678999999999
Q ss_pred HHHHHHhCCC
Q psy6603 261 LTHYISKYPK 270 (724)
Q Consensus 261 ~~~~~~~~~~ 270 (724)
+.+.+.....
T Consensus 610 ~~rll~~~~~ 619 (777)
T KOG1128|consen 610 YHRLLDLRKK 619 (777)
T ss_pred HHHHHHhhhh
Confidence 9998776443
No 123
>KOG3617|consensus
Probab=99.36 E-value=1e-07 Score=95.21 Aligned_cols=397 Identities=14% Similarity=0.082 Sum_probs=227.1
Q ss_pred cccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHH--------HHHH---cCCCchhHHHHHHHHH
Q psy6603 4 EHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVR--------RGLR---NDLKSHVCWHVYGLLQ 72 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~--------~~l~---~~p~~~~~~~~lg~~~ 72 (724)
.-|+.+.|.+..+-+-. ..+|-.+|....+..+.+-|.-++- ++++ .+|+... ...+.+.
T Consensus 740 tiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~e--akvAvLA 810 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDE--AKVAVLA 810 (1416)
T ss_pred EeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchh--hHHHHHH
Confidence 45788888887766544 2488888888888877776665553 2222 2343333 3446667
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Q psy6603 73 RSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNI 152 (724)
Q Consensus 73 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 152 (724)
..+|..++|...|.+.-+ +-.|-.+|...|.+++|.++-+.--++ .-...+++.+.-+...++.+.|+++
T Consensus 811 ieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHH
Confidence 778999999999998765 334566788889999998765432221 1335688888888889999999998
Q ss_pred HHHH-------HHhhccCCC------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcC
Q psy6603 153 LEAF-------RKTQQVTNS------YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLG 219 (724)
Q Consensus 153 ~~~~-------~~~~~~~p~------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 219 (724)
|++. .+.+..+|. ........|...|..+...|+.+.|+.+|..+-. |+.+..+.+-+|
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQG 952 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeecc
Confidence 8873 122222222 0112234556667777778888888888876543 456667777778
Q ss_pred ChHHHHHHHHHHHHHcCCcHHHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhh
Q psy6603 220 QYNEAMKHYESLIERNQENTLYYNKLVEAKQ-LTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHG 298 (724)
Q Consensus 220 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (724)
+.++|...-+ ...+..+-+.++..|. .|++.+|+..|.++.....- +.+....++++.
T Consensus 953 k~~kAa~iA~-----esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnA--------IRlcKEnd~~d~-------- 1011 (1416)
T KOG3617|consen 953 KTDKAARIAE-----ESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNA--------IRLCKENDMKDR-------- 1011 (1416)
T ss_pred CchHHHHHHH-----hcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--------HHHHHhcCHHHH--------
Confidence 8887765443 3556677778888865 48888998888776443211 111111111111
Q ss_pred hhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy6603 299 FHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYI 378 (724)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 378 (724)
+.+++.+-.... ...+...|++.- . ....-..+|.+.|.+.+|++..
T Consensus 1012 --------L~nlal~s~~~d----~v~aArYyEe~g----------------~-----~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 1012 --------LANLALMSGGSD----LVSAARYYEELG----------------G-----YAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred --------HHHHHhhcCchh----HHHHHHHHHHcc----------------h-----hhhHHHHHHHhhcchHHHHHHH
Confidence 111111111111 111111111110 0 0001223455566666666542
Q ss_pred HHH----------HhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHH
Q psy6603 379 NAA----------IDHTPT-LIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCS 447 (724)
Q Consensus 379 ~~~----------l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 447 (724)
=+. -.++|+ +|..+..-+..+....+|++|...+-.+.+... +.-++...+..-..+.-+
T Consensus 1059 F~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~---------AlqlC~~~nv~vtee~aE 1129 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG---------ALQLCKNRNVRVTEEFAE 1129 (1416)
T ss_pred HhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---------HHHHHhcCCCchhHHHHH
Confidence 211 123343 677777778888888888888877766554321 111112122211122222
Q ss_pred HhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh
Q psy6603 448 KFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVD 493 (724)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 493 (724)
.+. |......+........-++|.+..++|.|..|-+.|.++.
T Consensus 1130 ~mT---p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1130 LMT---PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred hcC---cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 221 1111223333344455668999999999999999888775
No 124
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.34 E-value=1.3e-11 Score=114.69 Aligned_cols=255 Identities=12% Similarity=0.098 Sum_probs=184.1
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
+|-.|+|.+++..++ +.. ...+...+....+.+++..+|+++..+..+.. ..+....+...++..+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKS-FSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHT-STCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccC-CCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHH
Confidence 466799999998877 333 12234567788899999999998876655543 2233345566677777666677788
Q ss_pred HHHHHHHHhhC--CCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy6603 82 IKCYRNALKWE--HDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKT 159 (724)
Q Consensus 82 ~~~~~~a~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 159 (724)
+..++..+... +.++......|.++...|++++|++.+.+. ++.+.......++...++.+.|.+.++.+.+.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 87777665433 235556667778888899999999877653 56778888899999999999999988887654
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q psy6603 160 QQVTNSYDFEHSELLLYQSMVIQDSG--DLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQE 237 (724)
Q Consensus 160 ~~~~p~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 237 (724)
. .+ ..-+.+..+.+....| .+.+|.-.|++.....|.++..+..++.+++.+|++++|...+.+++..+|+
T Consensus 161 ~---eD----~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 161 D---ED----SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp S---CC----HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred C---Cc----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 3 22 2222233333444444 6999999999988888888899999999999999999999999999999999
Q ss_pred cHHHHHHHHHH-hccCCh-HHHHHHHHHHHHhCCCCCc
Q psy6603 238 NTLYYNKLVEA-KQLTNN-DDIFQLLTHYISKYPKATV 273 (724)
Q Consensus 238 ~~~~~~~l~~~-~~~~~~-~~a~~~~~~~~~~~~~~~~ 273 (724)
+++++.+++.+ ...|+. +.+.+++.++...+|..+.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 99999999888 566777 6677788888888888743
No 125
>KOG0553|consensus
Probab=99.34 E-value=5.7e-12 Score=110.66 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=102.0
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
+.+.++|++|+..|.++++ -+|.++..+...|-+|.++|.++.|++-++.++.++|....+|..+|.+|..+|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 5678999999999999999 77888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchH
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 113 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 113 (724)
+..|+++++++|++......|..+-...+...
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999988888877766665554
No 126
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.32 E-value=1.2e-09 Score=99.11 Aligned_cols=181 Identities=9% Similarity=-0.052 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHH---HHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCW---HVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMR 100 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~ 100 (724)
++..++..|..++..|++++|+..|++++...|..+.+. +.+|.++++.+++++|+..|++.++..|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 567788999999999999999999999999999887664 788999999999999999999999998877 44788
Q ss_pred HHHHHHHHhc---------------c---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q psy6603 101 DLSLLQIQMR---------------D---LEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQV 162 (724)
Q Consensus 101 ~la~~~~~~~---------------~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 162 (724)
.+|.++...+ + ..+|+..|++.++..|+..-+ .+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~~--- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKDR--- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHHH---
Confidence 8887764443 1 346778888889988886432 1222212222111
Q ss_pred CCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH---hhHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6603 163 TNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK---LTVEETYGALKLKLGQYNEAMKHYESL 231 (724)
Q Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~ 231 (724)
...--+..|..|.+.|.|..|+.-++.+++..|+. .+++..++.+|..+|..++|......+
T Consensus 174 -------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 -------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred -------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 22333466888999999999999999999888765 557888889999999999988765543
No 127
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.30 E-value=1.1e-09 Score=97.34 Aligned_cols=175 Identities=19% Similarity=0.124 Sum_probs=129.3
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH---VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMR 100 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~ 100 (724)
++..++..|..++..|++.+|+..|++++...|.++ .+.+.+|.+++..|++.+|+..|++.++..|++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 467899999999999999999999999999888765 458889999999999999999999999998886 45788
Q ss_pred HHHHHHHHhc-----------chHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChh
Q psy6603 101 DLSLLQIQMR-----------DLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFE 169 (724)
Q Consensus 101 ~la~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 169 (724)
.+|.++.... ...+|+..|+..+...|+++.+- +|...+..+...
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~~---------- 139 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRNR---------- 139 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHHH----------
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHHH----------
Confidence 8888876543 34578888889998888866442 222222222221
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHh---hHHHHHHHHHHHcCChHHHH
Q psy6603 170 HSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKL---TVEETYGALKLKLGQYNEAM 225 (724)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~ 225 (724)
...--+..|..|.+.|.+..|+..++.+++..|+.+ .++..++.++.++|..+.|.
T Consensus 140 la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 140 LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 233445678889999999999999999999888764 47888889999999888543
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.29 E-value=1.1e-09 Score=103.07 Aligned_cols=152 Identities=17% Similarity=0.136 Sum_probs=96.5
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 105 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 105 (724)
....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++..+|.+.+++++..+|+.+.....+|.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 34456666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcC
Q psy6603 106 QIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSG 185 (724)
Q Consensus 106 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g 185 (724)
+++.|++.+|+..++..+..+|+++..|..++++|..+|+..+|... .+..+...|
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A------------------------~AE~~~~~G 439 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA------------------------RAEGYALAG 439 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH------------------------HHHHHHhCC
Confidence 66666666666666666666666666666666666666665555422 233555566
Q ss_pred CHHHHHHHHHHHhhhh
Q psy6603 186 DLEEAVKHLDRFKEQI 201 (724)
Q Consensus 186 ~~~~A~~~~~~~~~~~ 201 (724)
++++|+..+..+.+..
T Consensus 440 ~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 440 RLEQAIIFLMRASQQV 455 (484)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 6666666666665544
No 129
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.27 E-value=1e-10 Score=113.47 Aligned_cols=114 Identities=8% Similarity=-0.050 Sum_probs=106.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 109 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 109 (724)
-+...|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.++...
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 36677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy6603 110 RDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLL 143 (724)
Q Consensus 110 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 143 (724)
|++++|+..|+++++++|+++.+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877665444
No 130
>KOG2300|consensus
Probab=99.24 E-value=2.3e-06 Score=80.62 Aligned_cols=180 Identities=16% Similarity=0.080 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc-c--h
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAAIDH---TPT-------LIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA-D--R 423 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~--~ 423 (724)
.+-.++.+-.-.|++.+|++.+..+.+. .|. .+.....+|.-....|.++.|...|..+.++... + .
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 3345555566689999999988877654 354 3456677777777888999999999999887443 3 4
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchH
Q psy6603 424 YINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYK 503 (724)
Q Consensus 424 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 503 (724)
.+...+|..|++.|+-+.-.+.++.+-..+............+++. .|...+..+++.||...+.+.+
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v--~glfaf~qn~lnEaK~~l~e~L---------- 472 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYV--YGLFAFKQNDLNEAKRFLRETL---------- 472 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHH--HHHHHHHhccHHHHHHHHHHHH----------
Confidence 5677889999999988777777666554332222222222233332 4666667777777766544331
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCC
Q psy6603 504 NGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK 554 (724)
Q Consensus 504 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 554 (724)
++.+... .+.-.+-.+..+|.+....|+..++.+..+-++++..+
T Consensus 473 ---kmanaed---~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 473 ---KMANAED---LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred ---hhcchhh---HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 1110000 00112345667777777777777777777766665433
No 131
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.23 E-value=4.1e-09 Score=95.66 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhH---HHHHHHHHHHcCChHHHHHHHHHHHHHcCCcH---HHHH
Q psy6603 170 HSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTV---EETYGALKLKLGQYNEAMKHYESLIERNQENT---LYYN 243 (724)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~ 243 (724)
.+..++..|..+...|++++|++.|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++..|+++ .+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45667788999999999999999999999999987654 58999999999999999999999999998875 4566
Q ss_pred HHHHH-hccC---------------C---hHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCc
Q psy6603 244 KLVEA-KQLT---------------N---NDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVP 304 (724)
Q Consensus 244 ~l~~~-~~~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (724)
.+|.+ ...+ + ..+|+..|++++..+|++...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya------------------------------ 160 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT------------------------------ 160 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH------------------------------
Confidence 66654 1111 1 346888999999999988431
Q ss_pred hhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy6603 305 PLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDH 384 (724)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 384 (724)
..+...+......+.. --+.+|..|.+.|.+..|+.-++.+++.
T Consensus 161 ----------------~~A~~rl~~l~~~la~--------------------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~ 204 (243)
T PRK10866 161 ----------------TDATKRLVFLKDRLAK--------------------YELSVAEYYTKRGAYVAVVNRVEQMLRD 204 (243)
T ss_pred ----------------HHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 0111112222222211 2347899999999999999999999999
Q ss_pred CCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6603 385 TPT---LIELFVTKGRIYKHAGDVLEAYKWLDEA 415 (724)
Q Consensus 385 ~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a 415 (724)
.|+ ..+++..++..+...|..++|.......
T Consensus 205 Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 205 YPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 886 5688999999999999999998876544
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.20 E-value=6.3e-09 Score=92.41 Aligned_cols=174 Identities=19% Similarity=0.256 Sum_probs=129.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH---hhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcH---HHHH
Q psy6603 170 HSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK---LTVEETYGALKLKLGQYNEAMKHYESLIERNQENT---LYYN 243 (724)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~ 243 (724)
....++..|..+...|++.+|+..|++++...|.. +.+.+.+|.++.+.|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45788889999999999999999999999988865 56899999999999999999999999999999875 4566
Q ss_pred HHHHH-hc-----------cCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhH
Q psy6603 244 KLVEA-KQ-----------LTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLR 311 (724)
Q Consensus 244 ~l~~~-~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 311 (724)
.+|.+ +. .+...+|+..|+.++..+|++...
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~------------------------------------- 126 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA------------------------------------- 126 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH-------------------------------------
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH-------------------------------------
Confidence 66655 22 133468999999999999998542
Q ss_pred HhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh---
Q psy6603 312 SLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTL--- 388 (724)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--- 388 (724)
..+...+......+.. --+.+|..|.+.|.+..|+..++.+++..|+.
T Consensus 127 ---------~~A~~~l~~l~~~la~--------------------~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~ 177 (203)
T PF13525_consen 127 ---------EEAKKRLAELRNRLAE--------------------HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA 177 (203)
T ss_dssp ---------HHHHHHHHHHHHHHHH--------------------HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH
T ss_pred ---------HHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH
Confidence 1122222222222221 33478999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHcCCHHHHH
Q psy6603 389 IELFVTKGRIYKHAGDVLEAY 409 (724)
Q Consensus 389 ~~~~~~l~~~~~~~g~~~~A~ 409 (724)
.+++..++.++.++|..+.|.
T Consensus 178 ~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 178 EEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHH
Confidence 468889999999999888543
No 133
>KOG3616|consensus
Probab=99.20 E-value=5.2e-06 Score=82.38 Aligned_cols=573 Identities=12% Similarity=0.109 Sum_probs=273.3
Q ss_pred ccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHH--------------------HcCCCch
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL--------------------RNDLKSH 62 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------------------~~~p~~~ 62 (724)
.+.|+|..|...++.... .|+....|..++......|+.--|..+|...- +...+-.
T Consensus 455 id~~df~ra~afles~~~---~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt 531 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLESLEM---GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGT 531 (1636)
T ss_pred cccCchHHHHHHHHhhcc---CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCc
Confidence 467899999998887655 35666788888888888888777666664321 1222333
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHH---------------HHHH---
Q psy6603 63 VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRY---------------QLFM--- 124 (724)
Q Consensus 63 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~---------------~~l~--- 124 (724)
..|...+.+.....+|.+|...|-.- +..+ .-.-+|..+.+|++|+..-+ +++.
T Consensus 532 ~fykvra~lail~kkfk~ae~ifleq-----n~te---~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~ 603 (1636)
T KOG3616|consen 532 DFYKVRAMLAILEKKFKEAEMIFLEQ-----NATE---EAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTG 603 (1636)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhc-----ccHH---HHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcC
Confidence 44545555555555666665555321 1111 01113334444555443321 1111
Q ss_pred -------hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCC------CChhhHHHHHHHHHHHHHcCCHHHHH
Q psy6603 125 -------LRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNS------YDFEHSELLLYQSMVIQDSGDLEEAV 191 (724)
Q Consensus 125 -------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~g~~~~A~ 191 (724)
+...+... ..-..+|.+.|....|......-..... +.+ ......+.+-.-|.++.+..++++|+
T Consensus 604 qd~ka~elk~sdgd~-laaiqlyika~~p~~a~~~a~n~~~l~~-de~il~~ia~alik~elydkagdlfeki~d~dkal 681 (1636)
T KOG3616|consen 604 QDEKAAELKESDGDG-LAAIQLYIKAGKPAKAARAALNDEELLA-DEEILEHIAAALIKGELYDKAGDLFEKIHDFDKAL 681 (1636)
T ss_pred chhhhhhhccccCcc-HHHHHHHHHcCCchHHHHhhcCHHHhhc-cHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHH
Confidence 11111111 1123445555555555433211110000 000 00112334455577777788888898
Q ss_pred HHHHHH------hhh----hccHh-hHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHH
Q psy6603 192 KHLDRF------KEQ----IHDKL-TVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQL 260 (724)
Q Consensus 192 ~~~~~~------~~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~ 260 (724)
++|++. +++ .|... ..-...|.-+...|+++.|+..|-.+-.. ...+...+....+.+|+.+
T Consensus 682 e~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~-------~kaieaai~akew~kai~i 754 (1636)
T KOG3616|consen 682 ECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL-------IKAIEAAIGAKEWKKAISI 754 (1636)
T ss_pred HHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH-------HHHHHHHhhhhhhhhhHhH
Confidence 888753 322 24332 23445677788889999998887665322 1112222445666777777
Q ss_pred HHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCC
Q psy6603 261 LTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHF 340 (724)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 340 (724)
++.+......+...-.++-.+.+.++|+.+-.-|....+ +.....+|...++....-.+.. +.
T Consensus 755 ldniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~-------~~dai~my~k~~kw~da~kla~---e~------- 817 (1636)
T KOG3616|consen 755 LDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL-------FKDAIDMYGKAGKWEDAFKLAE---EC------- 817 (1636)
T ss_pred HHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch-------hHHHHHHHhccccHHHHHHHHH---Hh-------
Confidence 666555444333322333334444555554444433222 2222233333333211111111 10
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHH-------------HHHHHHHHH----------hcCCC-hHHHHHHHH
Q psy6603 341 SLQDEGEVEPASALLWVYHYLAQHYDHLGDTMK-------------ALNYINAAI----------DHTPT-LIELFVTKG 396 (724)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~-------------A~~~~~~~l----------~~~p~-~~~~~~~l~ 396 (724)
..+......|...+.-+...|+|.+ |+..|++.- +..|+ ..+....+|
T Consensus 818 --------~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~ 889 (1636)
T KOG3616|consen 818 --------HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFA 889 (1636)
T ss_pred --------cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHH
Confidence 0111122233333443444444443 333333210 11122 234556667
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHH----H
Q psy6603 397 RIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTE----C 472 (724)
Q Consensus 397 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 472 (724)
.-+...|+...|...|-++-.. ......|...+.+++|..+.+.-- .. ..-..+..+|...- -
T Consensus 890 ~e~e~~g~lkaae~~flea~d~--------kaavnmyk~s~lw~dayriakteg---g~--n~~k~v~flwaksiggdaa 956 (1636)
T KOG3616|consen 890 KELEAEGDLKAAEEHFLEAGDF--------KAAVNMYKASELWEDAYRIAKTEG---GA--NAEKHVAFLWAKSIGGDAA 956 (1636)
T ss_pred HHHHhccChhHHHHHHHhhhhH--------HHHHHHhhhhhhHHHHHHHHhccc---cc--cHHHHHHHHHHHhhCcHHH
Confidence 7777777777777766655432 123444555555555554433211 00 01111222332211 1
Q ss_pred HHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcC
Q psy6603 473 ALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRND 552 (724)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 552 (724)
..++.+.|-.+.++.. ..+.+.|+-|..+.+-..++ + .++++..++..+...|++++|-+.|-.+++++
T Consensus 957 vkllnk~gll~~~id~-------a~d~~afd~afdlari~~k~-k---~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 957 VKLLNKHGLLEAAIDF-------AADNCAFDFAFDLARIAAKD-K---MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHHHhhhhHHHHhhh-------hhcccchhhHHHHHHHhhhc-c---CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 1233444544444443 23345566665554443332 2 34588899999999999999999999999997
Q ss_pred CCccchHH----HHHHHHhccc-cHHHHHHHHHHHh----------hhcccc-HHHHHHHHHHHHHhhhHhhHHHHHHHH
Q psy6603 553 LKSHVCWH----VYGLLQRSDK-KYDEAIKCYRNAL----------KWEHDN-IQIMRDLSLLQIQMRDLEGYREGVSAM 616 (724)
Q Consensus 553 p~~~~~~~----~l~~~~~~~~-~~~~A~~~~~~al----------~~~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 616 (724)
.-+..-.. ..-.-..+.| +.++|...|-.-- ..+|+. ++++..-++-....|++..|.-.+-
T Consensus 1026 tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fll-- 1103 (1636)
T KOG3616|consen 1026 TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLL-- 1103 (1636)
T ss_pred cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhhee--
Confidence 65543111 1111122333 7777877764311 122221 2333333333334444444333221
Q ss_pred HhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHH
Q psy6603 617 ENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDR 653 (724)
Q Consensus 617 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 653 (724)
..+..+... ..+...+-|.+|+.+.+..+.
T Consensus 1104 -rankp~i~l------~yf~e~~lw~dalri~kdylp 1133 (1636)
T KOG3616|consen 1104 -RANKPDIAL------NYFIEAELWPDALRIAKDYLP 1133 (1636)
T ss_pred -ecCCCchHH------HHHHHhccChHHHHHHHhhCh
Confidence 111111111 145677888888888765543
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.17 E-value=2.2e-10 Score=111.19 Aligned_cols=106 Identities=10% Similarity=0.084 Sum_probs=100.3
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
+|..|+|++|+..|++++. .+|.++.+++.+|.++...|++++|+..+++++.++|+++.+++.+|.++...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 4678999999999999999 78899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQM 109 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~ 109 (724)
+..|++++.++|+++.+...++.|....
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988888876544
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.16 E-value=8.2e-10 Score=89.81 Aligned_cols=106 Identities=19% Similarity=0.109 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHHH
Q psy6603 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS---HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMRD 101 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~ 101 (724)
+++++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3578899999999999999999999999988876 4678889999999999999999999999988875 668999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCchhHH
Q psy6603 102 LSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133 (724)
Q Consensus 102 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 133 (724)
+|.++...|++++|...++++++..|++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999999877654
No 136
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.15 E-value=8.5e-11 Score=83.96 Aligned_cols=67 Identities=27% Similarity=0.314 Sum_probs=61.5
Q ss_pred hhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccc-cHHHHHHHHHHHhhhcc
Q psy6603 521 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK-KYDEAIKCYRNALKWEH 587 (724)
Q Consensus 521 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~p 587 (724)
++.+|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|++.|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45689999999999999999999999999999999999999999999999 79999999999999887
No 137
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.15 E-value=1.3e-09 Score=94.10 Aligned_cols=128 Identities=18% Similarity=0.189 Sum_probs=102.9
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHhhcCCH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS---HVCWHVYGLLQRSDKKY 78 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~ 78 (724)
+|-.+.|..+...+..+++.-........++.+|.++...|++++|+..|++++...|+. +.++..+|.++...|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 345567888888888887622333457788999999999999999999999999887663 34799999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHH-------HhcchH-------HHHHHHHHHHHhCCCc
Q psy6603 79 DEAIKCYRNALKWEHDNIQIMRDLSLLQI-------QMRDLE-------GYRETRYQLFMLRPTQ 129 (724)
Q Consensus 79 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~-------~~~~~~-------~A~~~~~~~l~~~p~~ 129 (724)
++|+..|++++.++|.....+..+|.++. ..|+++ +|+..+++++..+|.+
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999998888888888 666665 5555555666666654
No 138
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.7e-09 Score=94.24 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc---chHHHHHHHH
Q psy6603 44 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMR---DLEGYRETRY 120 (724)
Q Consensus 44 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~ 120 (724)
.+.-+.-++.-+..+|++...|..||.+|+.+|++..|...|.+++++.|++++++..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4556677788888999999999999999999999999999999999999999999999999887554 3668899999
Q ss_pred HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q psy6603 121 QLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQ 161 (724)
Q Consensus 121 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 161 (724)
+++..+|.+..+.+.+|..++..|+|.+|+..++.+++..+
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888774
No 139
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.15 E-value=1.7e-09 Score=93.70 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=93.9
Q ss_pred HHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q psy6603 16 KQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS---HVCWHVYGLLQRSDKKYDEAIKCYRNALKWE 92 (724)
Q Consensus 16 ~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 92 (724)
..++..+..+..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..+.+++...
T Consensus 23 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 102 (172)
T PRK02603 23 LKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN 102 (172)
T ss_pred HHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3344433456777889999999999999999999999999877654 4679999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhcc--------------hHHHHHHHHHHHHhCCCc
Q psy6603 93 HDNIQIMRDLSLLQIQMRD--------------LEGYRETRYQLFMLRPTQ 129 (724)
Q Consensus 93 p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~l~~~p~~ 129 (724)
|.+...+..+|.++...|+ +++|.+.+++++..+|++
T Consensus 103 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 103 PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999999999998887 455555566666666654
No 140
>KOG2053|consensus
Probab=99.15 E-value=4.1e-06 Score=85.31 Aligned_cols=445 Identities=13% Similarity=0.093 Sum_probs=250.6
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
++..|++++|..+++..-. ..+.+..++-.+-.+|..+|++++|..+|++++..+|+ ......+=.+|.+.+.|.+=
T Consensus 53 l~r~gk~~ea~~~Le~~~~--~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYG--LKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhcc--CCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHH
Confidence 3567999999988887666 34568889999999999999999999999999999999 77777777888888888775
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHH-HhcchH---------HHHHHHHHHHHhC-CCch-hHHHHHHHHHHHcCCHHHH
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQI-QMRDLE---------GYRETRYQLFMLR-PTQR-ASWIGFAMAYHLLHDFDMA 149 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~-~~~~~~---------~A~~~~~~~l~~~-p~~~-~~~~~la~~~~~~g~~~~A 149 (724)
.+.--+..+..|.++-.+.....+.+ .....+ -|...+++.++.. +-.. .-....-.++...|++++|
T Consensus 130 Qkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 130 QKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 55555555577887765444444333 322222 3445566666665 3222 2223334567788999999
Q ss_pred HHHHHH-HHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHH-HHHH------------H
Q psy6603 150 CNILEA-FRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEET-YGAL------------K 215 (724)
Q Consensus 150 ~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-la~~------------~ 215 (724)
..++.. ..+.. +. ............+...+++.+-.+...+++...+++..++.. .-.+ +
T Consensus 210 l~~l~~~la~~l---~~---~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~ 283 (932)
T KOG2053|consen 210 LEFLAITLAEKL---TS---ANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAH 283 (932)
T ss_pred HHHHHHHHHHhc---cc---cchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhh
Confidence 988743 22222 11 122333455667778999999999999999998887222211 1111 1
Q ss_pred HHcCChHHHHHHHHHHHHHcCCcH-HHHHHHHHHh-ccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHH
Q psy6603 216 LKLGQYNEAMKHYESLIERNQENT-LYYNKLVEAK-QLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDK 293 (724)
Q Consensus 216 ~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (724)
...+..+..++...+.+......+ -++..+..-+ ..|+.+++...|-+-....|-........+..++.......+..
T Consensus 284 s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~ 363 (932)
T KOG2053|consen 284 SLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSK 363 (932)
T ss_pred hhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHH
Confidence 122233334444444443322222 2333333333 56888887776655443333221111111111111111111111
Q ss_pred HHHhhhh-cCCch-hhh-----hhHHhhh---c---hhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCch-hHHHHHHH
Q psy6603 294 YLRHGFH-KGVPP-LFV-----NLRSLYS---N---TEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPA-SALLWVYH 359 (724)
Q Consensus 294 ~~~~~~~-~~~~~-~~~-----~l~~~~~---~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ 359 (724)
+...... .+... ... .+..+.. . .+....+.+....|...+.......+ .+..+. .....+-.
T Consensus 364 l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~---TE~~~g~~~llLav~ 440 (932)
T KOG2053|consen 364 LVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLP---TEYSFGDELLLLAVN 440 (932)
T ss_pred hhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccc---cccccHHHHHHHHHH
Confidence 1110000 00000 000 0011111 0 01112233334444443322111111 012222 22222333
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHc
Q psy6603 360 YLAQHYDHLGD---TMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRA 436 (724)
Q Consensus 360 ~la~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 436 (724)
.+...+.+.++ +-+|+-+++..+..+|.+...-..+.++|...|-+..|.+.|...--.+-....+-..+-..+...
T Consensus 441 ~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~ 520 (932)
T KOG2053|consen 441 HLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETS 520 (932)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhc
Confidence 45566666665 457999999999999999999999999999999999999999754322222222233344556667
Q ss_pred CCHHHHHHHHHHhhhcccCccC
Q psy6603 437 NLIKEAEETCSKFTREGVSAME 458 (724)
Q Consensus 437 g~~~~A~~~~~~~~~~~~~~~~ 458 (724)
|++..+...+...++...+...
T Consensus 521 g~~~~~s~~~~~~lkfy~~~~k 542 (932)
T KOG2053|consen 521 GRSSFASNTFNEHLKFYDSSLK 542 (932)
T ss_pred ccchhHHHHHHHHHHHHhhhhh
Confidence 8888888888777765444333
No 141
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=99.14 E-value=9.7e-07 Score=80.73 Aligned_cols=300 Identities=16% Similarity=0.096 Sum_probs=208.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCchh--HHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHH
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV--CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI-QIMRDLSLLQIQ 108 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~la~~~~~ 108 (724)
..-|.+....|+-..|.+.-.+.-++-..+.+ ++..-+..-.-.|+++.|.+-|+.++. +|+.- -.+..|-.-...
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 34577777889999999998887644333333 344447777889999999999999886 55432 234444444558
Q ss_pred hcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH-cCCH
Q psy6603 109 MRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD-SGDL 187 (724)
Q Consensus 109 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~g~~ 187 (724)
.|..+.|..+-+.+.+..|.-+.++...-...+..|+|+.|+++.+.........++.. ....+-+.-+..... ..+.
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a-eR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA-ERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH-HHHHHHHHHHHHHHHhcCCh
Confidence 89999999999999999999999999999999999999999999998777665555511 122222222222222 3457
Q ss_pred HHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q psy6603 188 EEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISK 267 (724)
Q Consensus 188 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 267 (724)
..|...-.+++++.|+....-..-+..+++.|+..++-.+++.+.+..|... .+...... +.|+ .++.-++++..+
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-ia~lY~~a-r~gd--ta~dRlkRa~~L 321 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-IALLYVRA-RSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-HHHHHHHh-cCCC--cHHHHHHHHHHH
Confidence 8899999999999999999889999999999999999999999999888433 22221111 1121 111111111100
Q ss_pred CCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q psy6603 268 YPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGE 347 (724)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 347 (724)
. .
T Consensus 322 ------------------------------------------------------------------~------------s 323 (531)
T COG3898 322 ------------------------------------------------------------------E------------S 323 (531)
T ss_pred ------------------------------------------------------------------H------------h
Confidence 0 1
Q ss_pred CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcc
Q psy6603 348 VEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHA-GDVLEAYKWLDEAQSL 418 (724)
Q Consensus 348 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~ 418 (724)
..|++.. ..+.++..-...|++..|..--+.+....|... ++..++.+-... |+-.++..++-+++.-
T Consensus 324 lk~nnae--s~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAE--SSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchH--HHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1111111 233566666778888888888888888888744 667778877665 8888998988888875
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.14 E-value=2e-10 Score=82.07 Aligned_cols=67 Identities=27% Similarity=0.314 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcC-CHHHHHHHHHHHHhhCC
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK-KYDEAIKCYRNALKWEH 93 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~a~~~~p 93 (724)
++.+|..+|.+++..|++++|+..|+++++.+|+++.+|+.+|.++..+| ++++|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34556666666666666666666666666666666666666666666666 46666666666666555
No 143
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.1e-09 Score=95.80 Aligned_cols=123 Identities=17% Similarity=0.114 Sum_probs=112.4
Q ss_pred chhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcC---CHHHHHH
Q psy6603 7 QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK---KYDEAIK 83 (724)
Q Consensus 7 ~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g---~~~~A~~ 83 (724)
+.+.-+.-++.-+. .+|+|++.|..+|.+|...|++..|...|.+++++.|+++..+..+|.++..+. ...++..
T Consensus 137 ~~~~l~a~Le~~L~--~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQ--QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 45666777888888 888999999999999999999999999999999999999999999999877653 4678999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchh
Q psy6603 84 CYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRA 131 (724)
Q Consensus 84 ~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 131 (724)
.|++++..+|.++.+.+.||..+++.|++.+|...++.+++..|.+..
T Consensus 215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999999987654
No 144
>KOG2300|consensus
Probab=99.13 E-value=8.1e-06 Score=77.09 Aligned_cols=329 Identities=12% Similarity=0.054 Sum_probs=173.2
Q ss_pred HHHHHHHHHHhc--chHHHHHHHHHHHHhCCCc---hhHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhccCCCCChhhHH
Q psy6603 99 MRDLSLLQIQMR--DLEGYRETRYQLFMLRPTQ---RASWIGFAMA-YHLLHDFDMACNILEAFRKTQQVTNSYDFEHSE 172 (724)
Q Consensus 99 ~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~ 172 (724)
+..+|..+...| +...++++++..+...|.+ ......+|.+ +....+.+.|...++++....+.-|+......+
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~ 89 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ 89 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence 333444444444 4444444444444444432 1233344443 344677777777777777666666664344556
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHhhhhccHh----hHHHHHHHHHHHcCChHHHHHHHHHHHHH-cCCcHHH---HH
Q psy6603 173 LLLYQSMVIQDSG-DLEEAVKHLDRFKEQIHDKL----TVEETYGALKLKLGQYNEAMKHYESLIER-NQENTLY---YN 243 (724)
Q Consensus 173 ~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~---~~ 243 (724)
+.-.++.+|.... .+..|...++++++.....+ ...+.++.++....++..|++.+.--.+. +|....+ .+
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~f 169 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLF 169 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHH
Confidence 7777888888877 88899999999999876654 36778899999999999999884332221 1211111 11
Q ss_pred HHHHH---hccCChHHHHH---HHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhch
Q psy6603 244 KLVEA---KQLTNNDDIFQ---LLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNT 317 (724)
Q Consensus 244 ~l~~~---~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (724)
.+... ....+..+... ...++.+....+.. -.+.++.|. ...-...|...
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~-------------~~E~LkvFy-----------l~lql~yy~~~ 225 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKT-------------QKEMLKVFY-----------LVLQLSYYLLP 225 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChH-------------HHHHHHHHH-----------HHHHHHHHhcc
Confidence 11111 11223333333 33333333222211 122222221 11111233445
Q ss_pred hhHHHHHHHHHHHHHHHhhcCC---CCCCCCCCCCchhHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy6603 318 EKCKIIQDLVESYVEALSKTGH---FSLQDEGEVEPASALLWV---------YHYLAQHYDHLGDTMKALNYINAAIDHT 385 (724)
Q Consensus 318 ~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~~~~~~A~~~~~~~l~~~ 385 (724)
|+......+++...+.+..... ..+..-....++....|+ +......-.-.|-+++|.++-++++...
T Consensus 226 gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~ 305 (629)
T KOG2300|consen 226 GQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQT 305 (629)
T ss_pred cchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5656666666666666654332 111111122223333331 1111111123577788888877776543
Q ss_pred CC------hH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHcc---Ccc-------chhhhhhHHHHHHHcCCHHH
Q psy6603 386 PT------LI--------ELFVTKGRIYKHAGDVLEAYKWLDEAQSL---DTA-------DRYINSKCAKYMLRANLIKE 441 (724)
Q Consensus 386 p~------~~--------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~-------~~~~~~~~~~~~~~~g~~~~ 441 (724)
.. .. ..+-.+..|-.-.|++.+|++....+.+. .|. .+.+...+|......|-++.
T Consensus 306 eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~en 385 (629)
T KOG2300|consen 306 EKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYEN 385 (629)
T ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHH
Confidence 11 11 12334455666778888888777766655 333 13445555666666667777
Q ss_pred HHHHHHHhhh
Q psy6603 442 AEETCSKFTR 451 (724)
Q Consensus 442 A~~~~~~~~~ 451 (724)
|...|..+.+
T Consensus 386 Ae~hf~~a~k 395 (629)
T KOG2300|consen 386 AEFHFIEATK 395 (629)
T ss_pred HHHHHHHHHH
Confidence 7777776665
No 145
>KOG3617|consensus
Probab=99.12 E-value=6.1e-06 Score=83.02 Aligned_cols=327 Identities=14% Similarity=0.073 Sum_probs=193.4
Q ss_pred HHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q psy6603 13 KFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE 92 (724)
Q Consensus 13 ~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 92 (724)
..++++.++| + +.-...|......|..++|..+|++.-+. -.+-..|...|.+++|.+.-+.--++
T Consensus 790 RAlR~a~q~~---~--e~eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi- 855 (1416)
T KOG3617|consen 790 RALRRAQQNG---E--EDEAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI- 855 (1416)
T ss_pred HHHHHHHhCC---c--chhhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce-
Confidence 3455555533 2 23344566777889999999999987653 35567788899999998776542221
Q ss_pred CCcHHHHHHHHHHHHHhcchHHHHHHHHH----------HHHhCCC----------chhHHHHHHHHHHHcCCHHHHHHH
Q psy6603 93 HDNIQIMRDLSLLQIQMRDLEGYRETRYQ----------LFMLRPT----------QRASWIGFAMAYHLLHDFDMACNI 152 (724)
Q Consensus 93 p~~~~~~~~la~~~~~~~~~~~A~~~~~~----------~l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~ 152 (724)
.-...+++.|.-+...++.+.|+++|++ ++..+|. ++..|...|..+...|+.+.|+.+
T Consensus 856 -HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 856 -HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred -ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHH
Confidence 1234788889888999999999999974 3444554 445677778888999999999988
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6603 153 LEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLI 232 (724)
Q Consensus 153 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 232 (724)
|..+. -|+.+..+.+-+|+.++|-.+-++ ..+..+.+.+|..|...|++.+|+..|.++-
T Consensus 935 Y~~A~---------------D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 935 YSSAK---------------DYFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHhh---------------hhhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 87643 455566677788999888776553 4566778889999999999999998887764
Q ss_pred HH------cCCc--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHH------------HH
Q psy6603 233 ER------NQEN--TLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTE------------ID 292 (724)
Q Consensus 233 ~~------~p~~--~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 292 (724)
.. ...+ .+-+..++..-...+.-.|..+|++.-...... ...|-..+.+.++ ++
T Consensus 995 afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~A------VmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 995 AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKA------VMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHH------HHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 32 2221 222233332222222333333333321110000 0001111111111 11
Q ss_pred HHHHhhhhcCCchhhhhhHHhhhchhhHHHHH---HHHHHHHHHHhhcCC--CC----------CCCCCCCCchhHHHHH
Q psy6603 293 KYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQ---DLVESYVEALSKTGH--FS----------LQDEGEVEPASALLWV 357 (724)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~--~~----------~~~~~~~~~~~~~~~~ 357 (724)
-..........|.++..-+.++........+- -+...|..++..+.. .+ +.+. ...+......+
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd-~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKD-DMPNEQERKQV 1147 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcC-CCccHHHHHHH
Confidence 11122222345666666666665554432222 223455555554322 11 1010 11122334446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q psy6603 358 YHYLAQHYDHLGDTMKALNYINAA 381 (724)
Q Consensus 358 ~~~la~~~~~~~~~~~A~~~~~~~ 381 (724)
+-.+|.+..++|.|..|-+-|.++
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHHhhh
Confidence 778999999999999988877765
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.11 E-value=1e-10 Score=87.07 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=40.3
Q ss_pred ccchhhHHHHHHHhhC-CCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHH
Q psy6603 5 HKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIK 83 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~-~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 83 (724)
+|+|++|+..++++++ +|.+| +...++.+|.++++.|++++|+.++++ .+.+|.+....+.+|.++..+|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555555555 22111 344444455555555555555555555 44455554555555555555555555555
Q ss_pred HHHH
Q psy6603 84 CYRN 87 (724)
Q Consensus 84 ~~~~ 87 (724)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5544
No 147
>KOG1941|consensus
Probab=99.10 E-value=1.3e-07 Score=85.23 Aligned_cols=248 Identities=14% Similarity=0.069 Sum_probs=166.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc--cc----hhh
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTL-----IELFVTKGRIYKHAGDVLEAYKWLDEAQSLDT--AD----RYI 425 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--~~----~~~ 425 (724)
++..++..+.+..++.+++.+-+..+.+.... ......+|..+.-++.++++++.|++++.... +| -.+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 55677777777778888888877776654322 24566688888888888888888888887732 22 345
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHhhhcccCcc-CChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHH
Q psy6603 426 NSKCAKYMLRANLIKEAEETCSKFTREGVSAM-ENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKN 504 (724)
Q Consensus 426 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 504 (724)
...++..+....++++|.-...++.+...+.. ...+.-......+.++.++..+|+..+|.+.+++........|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G---- 240 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG---- 240 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC----
Confidence 66788888888888888888887776432221 3333333334556689999999999999998776632221111
Q ss_pred HHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCC------ccchHHHHHHHHhccccHHH----
Q psy6603 505 GLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK------SHVCWHVYGLLQRSDKKYDE---- 574 (724)
Q Consensus 505 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~---- 574 (724)
+-+..+..+..+|++|...|+.+.|..-|+.+...... ...++...+.++....-..+
T Consensus 241 ------------dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~C 308 (518)
T KOG1941|consen 241 ------------DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNC 308 (518)
T ss_pred ------------ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 22345567888999999999999999999988765221 12255555555555444444
Q ss_pred -HHHHHHHHhhhccc----c--HHHHHHHHHHHHHhhhHhhHHHHHHHHHhhh
Q psy6603 575 -AIKCYRNALKWEHD----N--IQIMRDLSLLQIQMRDLEGYREGVSAMENLN 620 (724)
Q Consensus 575 -A~~~~~~al~~~p~----~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 620 (724)
|++.-++++++... . ...+..++.+|...|.-++....+..+-+..
T Consensus 309 rale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 309 RALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 77777777775432 1 2566778888888888777776666544433
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.10 E-value=2.6e-09 Score=92.23 Aligned_cols=129 Identities=13% Similarity=0.111 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCcc---chHHHHHHHHhccccHHHHHHH
Q psy6603 502 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH---VCWHVYGLLQRSDKKYDEAIKC 578 (724)
Q Consensus 502 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~ 578 (724)
|..+...+..+............++.+|.++...|++++|+..|++++.+.|++. .++.++|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444432223334567899999999999999999999999999877643 4899999999999999999999
Q ss_pred HHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q psy6603 579 YRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEI 658 (724)
Q Consensus 579 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 658 (724)
|++++.+.|.....+.+++.++...|+ .+...|++++|+..+++.+..|...
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~----------------------------~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGE----------------------------QAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhH----------------------------HHHHcccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776665 4456777776666666666555544
No 149
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.06 E-value=7.2e-09 Score=89.78 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=99.0
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHH
Q psy6603 59 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIG 135 (724)
Q Consensus 59 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 135 (724)
|....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3455668999999999999999999999999887653 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH
Q psy6603 136 FAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK 204 (724)
Q Consensus 136 la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 204 (724)
+|.++...|+...+...++.+. ..+++|++.+++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~---------------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE---------------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH---------------------------HHHHHHHHHHHHHHhhCchh
Confidence 9999999998887764333321 23567788888888887776
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.06 E-value=4.3e-10 Score=79.00 Aligned_cols=65 Identities=26% Similarity=0.398 Sum_probs=58.6
Q ss_pred HhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccH
Q psy6603 526 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 526 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 590 (724)
+.+|..+...|++++|+..|+++++.+|.++.+|+.+|.++...|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999875
No 151
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=8.6e-08 Score=79.90 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy6603 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYH 141 (724)
Q Consensus 62 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 141 (724)
...++..|..|-+.|-+.-|...|.+++.+.|+-+.++..+|..+...|+++.|.+.|+.+++++|.+.-+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 34467778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhccCC
Q psy6603 142 LLHDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~~p 164 (724)
--|++.-|.+-+.++-...+.+|
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCCh
Confidence 99999999877776665554444
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.05 E-value=2.4e-09 Score=83.70 Aligned_cols=98 Identities=26% Similarity=0.288 Sum_probs=76.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 109 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 109 (724)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46677777777888888888888888777777777777888888888888888888888877777777777788888777
Q ss_pred cchHHHHHHHHHHHHhCC
Q psy6603 110 RDLEGYRETRYQLFMLRP 127 (724)
Q Consensus 110 ~~~~~A~~~~~~~l~~~p 127 (724)
|+++.|...+.++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 888888777777777665
No 153
>PRK15331 chaperone protein SicA; Provisional
Probab=99.05 E-value=3.9e-09 Score=85.31 Aligned_cols=105 Identities=15% Similarity=0.077 Sum_probs=96.7
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 104 (724)
++..+..+..|.-++..|++++|...|+-..-.+|.++..|..||.++...|+|++|+..|..+..+++++|...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHHHHhCCCch
Q psy6603 105 LQIQMRDLEGYRETRYQLFMLRPTQR 130 (724)
Q Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~p~~~ 130 (724)
|++.+|+.+.|+.+|..++. .|.+.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 99999999999999999888 45543
No 154
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.05 E-value=8.2e-10 Score=77.58 Aligned_cols=64 Identities=27% Similarity=0.415 Sum_probs=40.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH
Q psy6603 33 MKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 96 (724)
Q Consensus 33 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~ 96 (724)
.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3566666666666666666666666666666666666666666666666666666666666653
No 155
>KOG0543|consensus
Probab=99.04 E-value=5.2e-09 Score=96.69 Aligned_cols=141 Identities=18% Similarity=0.046 Sum_probs=110.0
Q ss_pred HHHHHHHhhcchhhhhhhhhhhhhHhhhh-hchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhh
Q psy6603 471 ECALAYQRLGRWGDTLKKCHEVDRKCYEH-KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL 549 (724)
Q Consensus 471 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 549 (724)
..|..+++.|+|..|...|+.+...+-.. ..-.+=-+....+. ..++.+++.|+.+++++.+|+...+++|
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k--------~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALK--------LACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHH--------HHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 36999999999999999876655332211 10011111111111 2278999999999999999999999999
Q ss_pred hcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhH-HHHHHHHHhh
Q psy6603 550 RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGY-REGVSAMENL 619 (724)
Q Consensus 550 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 619 (724)
.++|+|..+++..|.++..+|+|+.|+..|++++++.|+|..+...|..|..+...+... .+.|..|...
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999988877766543 5566665433
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.03 E-value=3.8e-09 Score=88.35 Aligned_cols=124 Identities=15% Similarity=0.008 Sum_probs=98.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHH
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKS---HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMRDLSLL 105 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~ 105 (724)
+..+......++...+...++..++.+|+. ..+.+.+|.++...|++++|...|++++...|+. +.+...++.+
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 333344446788888888899998888887 4457778899999999999999999999877655 3477888999
Q ss_pred HHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6603 106 QIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAF 156 (724)
Q Consensus 106 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 156 (724)
+...|++++|+..++. +...+..+.++..+|.++...|++++|+..|+.+
T Consensus 95 ~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999999999988865 3344456678888899999999999999888764
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.03 E-value=2.5e-08 Score=93.99 Aligned_cols=98 Identities=19% Similarity=0.166 Sum_probs=72.7
Q ss_pred HHHhhhhHhhhc-CChHHHHHHHHHhhhcCCC--c----cchHHHHHHHHhccccHHHHHHHHHHHhhhccc-------c
Q psy6603 524 TLAMKGLTLNCL-GRKEEAYEYVRRGLRNDLK--S----HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD-------N 589 (724)
Q Consensus 524 ~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-------~ 589 (724)
++..+|.+|... |++++|++.|++|++.... . ..++..+|.++...|+|++|++.|+++....-+ -
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 677788889888 9999999999999986221 1 126778899999999999999999998874321 1
Q ss_pred HHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhh
Q psy6603 590 IQIMRDLSLLQIQMRDLEGYREGVSAMENLNE 621 (724)
Q Consensus 590 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 621 (724)
...+...+.|++..||...|.+.++......|
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 23456778888999999999999998876654
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.02 E-value=1.8e-08 Score=84.23 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=100.6
Q ss_pred cccchhhHHHHHHHhhC-CCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHhhcCCHH
Q psy6603 4 EHKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS---HVCWHVYGLLQRSDKKYD 79 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~-~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~ 79 (724)
..+++..+...++.+.+ .|..|-...+.+.+|.+++..|++++|...|+.++...|+. +.+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 46788888888999998 33333346788899999999999999999999999987665 346888999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q psy6603 80 EAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLF 123 (724)
Q Consensus 80 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 123 (724)
+|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999976 34455567788999999999999999999998864
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.02 E-value=1.1e-09 Score=81.53 Aligned_cols=80 Identities=21% Similarity=0.185 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHHHcCCC--chhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHH
Q psy6603 41 LGRKEEAYEYVRRGLRNDLK--SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRET 118 (724)
Q Consensus 41 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 118 (724)
.|+++.|+..++++++.+|. +...++.+|.+++..|++++|+..+++ ...+|.++...+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35555566666666555553 233455556666666666666655555 555555555555555555555555555555
Q ss_pred HHH
Q psy6603 119 RYQ 121 (724)
Q Consensus 119 ~~~ 121 (724)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 160
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=8.4e-08 Score=79.94 Aligned_cols=197 Identities=15% Similarity=0.201 Sum_probs=145.4
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 104 (724)
...+..++..|..|-..|-+.-|.--|.+++.+.|+-+.++..+|..+...|+|+.|.+.|...++++|.+.-+..+.|.
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHcCCHHHHHHHHHH-HHHhhccCCCCChhhHHHHHHHHHHH
Q psy6603 105 LQIQMRDLEGYRETRYQLFMLRPTQRA--SWIGFAMAYHLLHDFDMACNILEA-FRKTQQVTNSYDFEHSELLLYQSMVI 181 (724)
Q Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~ 181 (724)
.+.--|++.-|.+.+.+..+.+|++|- .|..+. ...-+..+|..-+.+ +.+.. .+ ......+-+.+
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d---~e-~WG~~iV~~yL---- 210 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSD---KE-QWGWNIVEFYL---- 210 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhcc---Hh-hhhHHHHHHHH----
Confidence 999999999999999999999999874 333322 233455666543322 22111 11 00111122222
Q ss_pred HHcCCHHHHHHHHHHHhhhhcc-------HhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q psy6603 182 QDSGDLEEAVKHLDRFKEQIHD-------KLTVEETYGALKLKLGQYNEAMKHYESLIERNQ 236 (724)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 236 (724)
|+..+ ...++++..-..+ -.++++.+|..+...|+.++|...|+-++..+-
T Consensus 211 ---gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 211 ---GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ---hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22211 1122222222222 256889999999999999999999999887654
No 161
>KOG1070|consensus
Probab=99.00 E-value=3.4e-07 Score=97.05 Aligned_cols=215 Identities=15% Similarity=0.127 Sum_probs=150.5
Q ss_pred HHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCc----hhHHHHHHHHHhhcCCHHHHHHHHHH
Q psy6603 13 KFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR-NDLKS----HVCWHVYGLLQRSDKKYDEAIKCYRN 87 (724)
Q Consensus 13 ~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~ 87 (724)
+.|++.+. .+|+.+..|.....-....++.++|.+.+++|+. +++.. ...|..+-+....-|.-+.-.+.|++
T Consensus 1445 eDferlvr--ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1445 EDFERLVR--SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHh--cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34455555 4567777777666667777777888888887774 33332 22355555555555666666777777
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCC
Q psy6603 88 ALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYD 167 (724)
Q Consensus 88 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 167 (724)
|.+.. +...++..|..+|...+.+++|.++++.+++...+....|..++..+++.++-+.|..++.++++..+.
T Consensus 1523 Acqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----- 1596 (1710)
T KOG1070|consen 1523 ACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK----- 1596 (1710)
T ss_pred HHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-----
Confidence 77643 334567777777777778888888887777777777777888888777777777777777777776643
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q psy6603 168 FEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERN 235 (724)
Q Consensus 168 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 235 (724)
..+.+..-..|.+-++.|+.+.+...|+..+...|...+.|..+.+.-.+.|+.+.+...|++++.+.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 23566666667777777888887778887777777777777777777777777777778888777764
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.00 E-value=1.3e-08 Score=82.62 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH---hhH
Q psy6603 131 ASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK---LTV 207 (724)
Q Consensus 131 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~ 207 (724)
..++.+|..+...|++++|+..+..+....+.++. ...+++.+|.++...|++++|+..|++++...|++ +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY----APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc----cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHH
Confidence 34566666666677777777666666554432221 34566677777777777777777777777776664 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHH
Q psy6603 208 EETYGALKLKLGQYNEAMKHYESLIERNQENTLYY 242 (724)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 242 (724)
+..+|.++...|++++|+..++++++..|++..+.
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 77777777778888888888888777777766543
No 163
>KOG1941|consensus
Probab=98.99 E-value=1.7e-07 Score=84.63 Aligned_cols=232 Identities=10% Similarity=0.088 Sum_probs=171.9
Q ss_pred CcccccchhhHHHHHHHhhCCCCCCCh---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC----C--chhHHHHHHHH
Q psy6603 1 KCYEHKQYKNGLKFAKQILTNPKYAEH---GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDL----K--SHVCWHVYGLL 71 (724)
Q Consensus 1 k~~~~~~~~~A~~~~~~~l~~p~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----~--~~~~~~~lg~~ 71 (724)
++|.+.++++|+....+.+. ...+. -.++-.+..+...+|.+++++..--..+.... . .-.++.+++..
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~--~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~ 92 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLE--KLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARS 92 (518)
T ss_pred hHhcCchHHHHHHHHHHHHH--HHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999888 22222 23344455677888888887766544443221 1 13457788888
Q ss_pred HhhcCCHHHHHHHHHHHHhhCCCc-----HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCc------hhHHHHHHHHH
Q psy6603 72 QRSDKKYDEAIKCYRNALKWEHDN-----IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQ------RASWIGFAMAY 140 (724)
Q Consensus 72 ~~~~g~~~~A~~~~~~a~~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~ 140 (724)
+...-++.+++.+-+..+.+.... ..+...++..+..++.++++++.|+++++...++ ..+...++..+
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf 172 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF 172 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence 888889999999888887753322 2467779999999999999999999999875442 25788899999
Q ss_pred HHcCCHHHHHHHHHHHHHhhccCC-C--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh------ccHhhHHHHH
Q psy6603 141 HLLHDFDMACNILEAFRKTQQVTN-S--YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI------HDKLTVEETY 211 (724)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~~p-~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l 211 (724)
....++++|+-+..++......-. . .......+++.++..+..+|..-.|.++.+++.++. +-......-+
T Consensus 173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~ 252 (518)
T KOG1941|consen 173 AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF 252 (518)
T ss_pred HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 999999999988777666553222 1 112345567788899999999999999999987764 3335567778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH
Q psy6603 212 GALKLKLGQYNEAMKHYESLIER 234 (724)
Q Consensus 212 a~~~~~~g~~~~A~~~~~~~~~~ 234 (724)
|++|...|+.+.|..-|+.+...
T Consensus 253 aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 253 ADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHhcccHhHHHHHHHHHHHH
Confidence 99999999999998888888764
No 164
>KOG1070|consensus
Probab=98.99 E-value=1.3e-07 Score=100.05 Aligned_cols=218 Identities=15% Similarity=0.149 Sum_probs=187.7
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh-CCCc----HHHHHHHHHHHHHhcchHHHHH
Q psy6603 43 RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW-EHDN----IQIMRDLSLLQIQMRDLEGYRE 117 (724)
Q Consensus 43 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~-~p~~----~~~~~~la~~~~~~~~~~~A~~ 117 (724)
+-.+..+-|++.+..+|++...|..+-......++.++|.+.+++|+.. ++.. ..+|..+-++...-|.-+.-.+
T Consensus 1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 3445667888999999999999999999999999999999999999964 4443 2355555555556677777788
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6603 118 TRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRF 197 (724)
Q Consensus 118 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 197 (724)
.|+++.+... ....+..|..+|...+++++|.++++.+.+.+.. ....|...+..+.+.++-+.|...+.++
T Consensus 1519 VFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-------~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1519 VFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-------TRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-------hhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 8888887652 3467888999999999999999999999999853 4469999999999999999999999999
Q ss_pred hhhhcc--HhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhC
Q psy6603 198 KEQIHD--KLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKY 268 (724)
Q Consensus 198 ~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~ 268 (724)
++.-|. +.......|.+-++.|+.+.+...|+..+...|.-.+.|.-+... .+.|+.+.+..+|++++...
T Consensus 1591 L~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1591 LKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 999998 778888999999999999999999999999999999999998888 88999999999999998864
No 165
>KOG3081|consensus
Probab=98.98 E-value=3.6e-07 Score=79.16 Aligned_cols=252 Identities=11% Similarity=0.110 Sum_probs=179.0
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
+|-.|.|.+++...+..-.. +...+..+.+.+.|...|++..-+.-....- .....+...++.....-++.++-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence 45668888888877665552 2666788888888888888766554443321 11223344455555555666655
Q ss_pred HHHHHHHHhhCC--CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy6603 82 IKCYRNALKWEH--DNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKT 159 (724)
Q Consensus 82 ~~~~~~a~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 159 (724)
+....+.+.... .+......-|.++...|++++|...... -.+.++...-..++.+..+.+-|.+.++++...
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 555544443222 2233455556788899999999977655 234456666677888899999999888777655
Q ss_pred hccCCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q psy6603 160 QQVTNSYDFEHSELLLYQSMVIQD----SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERN 235 (724)
Q Consensus 160 ~~~~p~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 235 (724)
. ....+..+|..+.+ .+++.+|.-+|++.-...|..+......+.+.+.+|++++|...++.++..+
T Consensus 167 d---------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 167 D---------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred c---------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 4 33455556666655 4578999999999998888899999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHH-hccCChHHHH-HHHHHHHHhCCCCCc
Q psy6603 236 QENTLYYNKLVEA-KQLTNNDDIF-QLLTHYISKYPKATV 273 (724)
Q Consensus 236 p~~~~~~~~l~~~-~~~~~~~~a~-~~~~~~~~~~~~~~~ 273 (724)
+++++.+.++..+ ...|...++. +.+.+....+|....
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999998888 6667765554 455666777777644
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.98 E-value=2.1e-08 Score=91.56 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=91.5
Q ss_pred HHHHHHHHHHH-hccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHH
Q psy6603 28 GETLAMKGLTL-NCLGRKEEAYEYVRRGLRNDLKSH---VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMR 100 (724)
Q Consensus 28 ~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~ 100 (724)
....+..|..+ ...|++++|+..|+..++..|++. .+++.+|.+++..|++++|+..|++++...|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46777788776 567999999999999999999884 689999999999999999999999999887774 77889
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCchhH
Q psy6603 101 DLSLLQIQMRDLEGYRETRYQLFMLRPTQRAS 132 (724)
Q Consensus 101 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 132 (724)
.+|.++...|++++|...|+++++..|+...+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999987654
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.97 E-value=4.8e-09 Score=81.96 Aligned_cols=97 Identities=25% Similarity=0.274 Sum_probs=83.4
Q ss_pred HHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHh
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 603 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 603 (724)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+++|++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57888999999999999999999999999998889999999999999999999999999999999988888888877777
Q ss_pred hhHhhHHHHHHHHHhhh
Q psy6603 604 RDLEGYREGVSAMENLN 620 (724)
Q Consensus 604 ~~~~~a~~~~~~~~~~~ 620 (724)
|+++.|...+..+....
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 77777777666555443
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.95 E-value=2.8e-08 Score=93.70 Aligned_cols=209 Identities=18% Similarity=0.147 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-----C-chhHHHHHHHHHhhcCCHHHHHHHHHHHHhhC--CCc----
Q psy6603 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDL-----K-SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE--HDN---- 95 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-----~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~--p~~---- 95 (724)
.+.+...|.++...|++++|...|.++....- . ....+...+.++... ++++|+.+|++++.+. .++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 45667788889999999999999999875432 1 123355667776654 9999999999999862 222
Q ss_pred HHHHHHHHHHHHHh-cchHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCCh
Q psy6603 96 IQIMRDLSLLQIQM-RDLEGYRETRYQLFMLRPT------QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDF 168 (724)
Q Consensus 96 ~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 168 (724)
...+..+|.+|... |++++|++.|+++++.... ....+..+|.++...|+|++|+..|++.......++....
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 44788999999998 9999999999999986422 2356778899999999999999999998776544444333
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH-----hhHHHHHHHHHHH--cCChHHHHHHHHHHHHHcCC
Q psy6603 169 EHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK-----LTVEETYGALKLK--LGQYNEAMKHYESLIERNQE 237 (724)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~p~ 237 (724)
.....++..+.++...|++..|...+++....+|.. ......+..++-. ...+++|+..|.++.+++|-
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 344566777889999999999999999999888754 2344444444433 34577788888777666553
No 169
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.94 E-value=2e-07 Score=81.36 Aligned_cols=188 Identities=15% Similarity=0.046 Sum_probs=140.6
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchh---HHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH---HHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV---CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ---IMR 100 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~ 100 (724)
.+..|+..|...++.|++++|+..|+.+....|.++. +...++.++++.+++++|+...++-+.+.|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3578999999999999999999999999998887654 4778899999999999999999999999988755 677
Q ss_pred HHHHHHHHh--------cchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHH
Q psy6603 101 DLSLLQIQM--------RDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSE 172 (724)
Q Consensus 101 ~la~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~ 172 (724)
..|.++... .-...|+..|+.++...|+..-+-..... +..+... ...
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~--------------i~~~~d~----------LA~ 168 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR--------------IVKLNDA----------LAG 168 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH--------------HHHHHHH----------HHH
Confidence 777776532 22567888889999999986543221111 1111111 122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH---hhHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CCcH
Q psy6603 173 LLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK---LTVEETYGALKLKLGQYNEAMKHYESLIERN-QENT 239 (724)
Q Consensus 173 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 239 (724)
--...|..|.+.|.+..|+.-++.+++..|+. ..++..+..+|..+|-.++|.+.- +++..+ |+++
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s~ 238 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCCCCc
Confidence 33456788999999999999999999887665 447788888899999998887764 445544 4443
No 170
>PRK11906 transcriptional regulator; Provisional
Probab=98.94 E-value=3.8e-08 Score=93.71 Aligned_cols=147 Identities=10% Similarity=0.028 Sum_probs=99.8
Q ss_pred chhhHHHHHHHhhC-CCCCCChHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcC
Q psy6603 7 QYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCL---------GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK 76 (724)
Q Consensus 7 ~~~~A~~~~~~~l~-~p~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 76 (724)
..+.|+.+|.+++. .+.+|..+.++..++.|++.. ....+|....+++++++|.++.++..+|.+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 34567777777772 226667777777777766543 23446777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHH-HHHcCCHHHHHHHH
Q psy6603 77 KYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMA-YHLLHDFDMACNIL 153 (724)
Q Consensus 77 ~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~ 153 (724)
+++.|+..|++|+.++|+.+.+++..|.+....|+.++|...++++++++|.-..+-...-.+ .+-....++|+.+|
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 777777777777777777777777777777777777777777777777777654433332222 33344556666554
No 171
>KOG0543|consensus
Probab=98.93 E-value=3.3e-08 Score=91.55 Aligned_cols=131 Identities=13% Similarity=0.137 Sum_probs=110.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCC----c-----------hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK----S-----------HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 94 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~ 94 (724)
..-..|..+++.|+|..|...|++++..-+. + ..++.+++.|+.++++|.+|+....+++..+|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 4456788999999999999999998864221 1 235889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH-HHHHHHHHHhh
Q psy6603 95 NIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMA-CNILEAFRKTQ 160 (724)
Q Consensus 95 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~~~ 160 (724)
|..+++..|.++..+|+++.|+..|+++++++|+|..+...+..+..+..++.+. .+.|..+....
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999998888777666655 45555554443
No 172
>KOG4648|consensus
Probab=98.92 E-value=8.7e-10 Score=98.11 Aligned_cols=229 Identities=10% Similarity=-0.000 Sum_probs=160.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy6603 31 LAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMR 110 (724)
Q Consensus 31 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 110 (724)
+-..|..|+++|+|++|+++|.+++..+|.++..+.+.+.+|++.+.|..|...+..|+.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCC---ChhhHHH--HHHHHHHHHHcC
Q psy6603 111 DLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSY---DFEHSEL--LLYQSMVIQDSG 185 (724)
Q Consensus 111 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~~~--~~~~~~~~~~~g 185 (724)
...+|.+.++.++++.|++.+..-.++.+ ....++.- +.+. .|.. ....... .-..|..+...|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i----~Sl~E~~I----~~Ks---T~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~ 248 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARI----NSLRERKI----ATKS---TPGFTPARQGMIQILPIKKPGYKFSKKA 248 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHh----cchHhhhH----Hhhc---CCCCCccccchhhhccccCcchhhhhhh
Confidence 99999999999999999977655444433 22322211 1111 1110 0000111 123366778888
Q ss_pred CHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHH
Q psy6603 186 DLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHY 264 (724)
Q Consensus 186 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~ 264 (724)
.++.++.++.+-+....++...... +..+.+..++++++.-..+.+..+|........-+.. --.|...++...++.+
T Consensus 249 ~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~ 327 (536)
T KOG4648|consen 249 MRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTA 327 (536)
T ss_pred ccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence 8888888888776655544443333 6677777888888887777776665433222221111 1123334445555555
Q ss_pred HHhCCCC
Q psy6603 265 ISKYPKA 271 (724)
Q Consensus 265 ~~~~~~~ 271 (724)
+...|..
T Consensus 328 ~~~~P~~ 334 (536)
T KOG4648|consen 328 VKVAPAV 334 (536)
T ss_pred eeecccc
Confidence 5555544
No 173
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.92 E-value=7.6e-07 Score=77.84 Aligned_cols=189 Identities=16% Similarity=0.166 Sum_probs=142.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHh---hHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHH---HHH
Q psy6603 170 HSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKL---TVEETYGALKLKLGQYNEAMKHYESLIERNQENTL---YYN 243 (724)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~ 243 (724)
.+..++..|....+.|++++|++.|+.+....|..+ .+...++.++.+.+++++|+...++-+...|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 457888899999999999999999999999888764 58889999999999999999999999999998764 334
Q ss_pred HHHHH--hcc----C---ChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhh
Q psy6603 244 KLVEA--KQL----T---NNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLY 314 (724)
Q Consensus 244 ~l~~~--~~~----~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (724)
..+.. ... . -...|+..|+..+..+|++.-.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya---------------------------------------- 152 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA---------------------------------------- 152 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch----------------------------------------
Confidence 44433 222 1 2356788888899999998432
Q ss_pred hchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hHHH
Q psy6603 315 SNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPT---LIEL 391 (724)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~ 391 (724)
..+...+......+.. --..+|..|.+.|.+..|+.-++.+++..|+ ..++
T Consensus 153 ------~dA~~~i~~~~d~LA~--------------------~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ea 206 (254)
T COG4105 153 ------PDAKARIVKLNDALAG--------------------HEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREA 206 (254)
T ss_pred ------hhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHH
Confidence 0111222222222211 2347899999999999999999999998776 4578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCccchh
Q psy6603 392 FVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRY 424 (724)
Q Consensus 392 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 424 (724)
+..+..+|..+|-.++|.+.-.-.-...|++++
T Consensus 207 L~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~~ 239 (254)
T COG4105 207 LARLEEAYYALGLTDEAKKTAKVLGANYPDSQW 239 (254)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhcCCCCcc
Confidence 888999999999999998765554444555543
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=98.91 E-value=4.7e-08 Score=79.21 Aligned_cols=103 Identities=11% Similarity=-0.030 Sum_probs=96.1
Q ss_pred HcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHH
Q psy6603 56 RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIG 135 (724)
Q Consensus 56 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 135 (724)
.+.++.....+..|.-++..|++++|...|+-....+|.++..+..||.|+..++++++|+..|..+..+++++|...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34555566788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q psy6603 136 FAMAYHLLHDFDMACNILEAFRK 158 (724)
Q Consensus 136 la~~~~~~g~~~~A~~~~~~~~~ 158 (724)
.|.|+...|+.+.|...|+.+..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999988766
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.89 E-value=3e-08 Score=90.55 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=67.6
Q ss_pred hchHHHHHHHHH-HhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCcc---chHHHHHHHHhccccHHHH
Q psy6603 500 KQYKNGLKFAKQ-ILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH---VCWHVYGLLQRSDKKYDEA 575 (724)
Q Consensus 500 ~~~~~A~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A 575 (724)
|+|++|+..|+. +...|+++..+.+++.+|.+|...|++++|+..|+++++..|+++ .+++.+|.++...|++++|
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence 344444444444 556666665667888888888888888888888888887766643 3777778888888888888
Q ss_pred HHHHHHHhhhccccHHHH
Q psy6603 576 IKCYRNALKWEHDNIQIM 593 (724)
Q Consensus 576 ~~~~~~al~~~p~~~~~~ 593 (724)
+..|+++++..|++..+.
T Consensus 237 ~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 237 KAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHCcCCHHHH
Confidence 888888888888776543
No 176
>PRK11906 transcriptional regulator; Provisional
Probab=98.85 E-value=3.2e-07 Score=87.53 Aligned_cols=163 Identities=8% Similarity=-0.061 Sum_probs=129.7
Q ss_pred HHHHHHHHHhccCC---HHHHHHHHHHHH---HcCCCchhHHHHHHHHHhhc---------CCHHHHHHHHHHHHhhCCC
Q psy6603 30 TLAMKGLTLNCLGR---KEEAYEYVRRGL---RNDLKSHVCWHVYGLLQRSD---------KKYDEAIKCYRNALKWEHD 94 (724)
Q Consensus 30 ~~~~~a~~~~~~g~---~~~A~~~~~~~l---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~a~~~~p~ 94 (724)
.++..|......+. .+.|+.+|.+++ ..+|+...++..++.++... ....+|...-+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 44778887766664 457999999999 99999999999999888764 2456789999999999999
Q ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHH
Q psy6603 95 NIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELL 174 (724)
Q Consensus 95 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~ 174 (724)
++.++..+|.+....++++.|...|++++.++|+.+.+|+..|.+....|+.++|...++++.+.. |. ......
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs---P~---~~~~~~ 410 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE---PR---RRKAVV 410 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---ch---hhHHHH
Confidence 999999999999999999999999999999999999999999999999999999998888866554 53 111122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Q psy6603 175 LYQSMVIQDSGDLEEAVKHLDRFK 198 (724)
Q Consensus 175 ~~~~~~~~~~g~~~~A~~~~~~~~ 198 (724)
..+-.-.+-..-.+.|+..|-+-.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 411 IKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHcCCchhhhHHHHhhcc
Confidence 222221333445677777766543
No 177
>KOG3081|consensus
Probab=98.85 E-value=1.5e-06 Score=75.39 Aligned_cols=266 Identities=14% Similarity=0.109 Sum_probs=157.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHH
Q psy6603 363 QHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEA 442 (724)
Q Consensus 363 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A 442 (724)
+-++..|+|..++....+.-... ..+.....+.+.|..+|.+...+......- .. .......++.+...-++.++-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~--~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK-AT--PLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc-CC--hHHHHHHHHHHhhCcchhHHH
Confidence 34555689998888777655443 667777788888888887654333221111 00 011111222222222332222
Q ss_pred HHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh---------hHhhhhhchHHHHHHHHHHh
Q psy6603 443 EETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVD---------RKCYEHKQYKNGLKFAKQIL 513 (724)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~~A~~~~~~~~ 513 (724)
+.-....+...... .. .+|. .--+.++..-|++++|++...... ..+..+.+++-|.+..+.+.
T Consensus 92 ~~~l~E~~a~~~~~-sn-----~i~~-l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 92 LASLYELVADSTDG-SN-----LIDL-LLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHhhccc-hh-----HHHH-HHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221110000 00 0111 113566666667776666555422 23334455666666555544
Q ss_pred cCCCCCchhHHHHhhhhHhhh----cCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhcccc
Q psy6603 514 TNPKYAEHGETLAMKGLTLNC----LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN 589 (724)
Q Consensus 514 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 589 (724)
.- ++..++..+|..+.+ .+++.+|.-+|+..-+..|..+......+.++..+|+|++|...++.++..++++
T Consensus 165 ~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 165 QI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred cc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 32 333466667766655 3568899999999988888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHhhHHH-HHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHH
Q psy6603 590 IQIMRDLSLLQIQMRDLEGYRE-GVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHF 655 (724)
Q Consensus 590 ~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 655 (724)
++++.++..+-...|.-..+.+ .+.++...+|..+.. .++.+...-|+++...|
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v------------k~~~ekeaeFDrl~~qy 295 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV------------KHLNEKEAEFDRLVLQY 295 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH------------HHHHHHHHHHHHHHHHh
Confidence 9999999988888887655554 334444555544322 23445555565555443
No 178
>KOG2471|consensus
Probab=98.84 E-value=1.8e-05 Score=74.85 Aligned_cols=306 Identities=11% Similarity=0.031 Sum_probs=175.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH-HhhcCCHHHHHHHHHHH--Hhh---CC----------
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLL-QRSDKKYDEAIKCYRNA--LKW---EH---------- 93 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~a--~~~---~p---------- 93 (724)
.+...+...+..+.++...+.++..-.++.++..+.+..+.+ +++.|.+... ...+.. +.. .|
T Consensus 19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~~gld~~ 97 (696)
T KOG2471|consen 19 SLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVSSGLSLK 97 (696)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchhcchhhh
Confidence 444455556667777777777777766666655554444433 3344433221 111111 111 11
Q ss_pred CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC----c-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---ccCCC
Q psy6603 94 DNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT----Q-RASWIGFAMAYHLLHDFDMACNILEAFRKTQ---QVTNS 165 (724)
Q Consensus 94 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~p~ 165 (724)
++....++.|.++.....+..|++.....+..-.. . ...-+..-..+....+-++|+.++.-..+.. ...+.
T Consensus 98 ~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~ 177 (696)
T KOG2471|consen 98 QGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLV 177 (696)
T ss_pred cchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 12335666777777777777777665544432211 1 1122233344555566666665544332221 11111
Q ss_pred -----------------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChH
Q psy6603 166 -----------------------YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYN 222 (724)
Q Consensus 166 -----------------------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 222 (724)
.......+..+....+....+..-+....+.+.....+.+.+....+..++..|++.
T Consensus 178 gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~ 257 (696)
T KOG2471|consen 178 GNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHP 257 (696)
T ss_pred ccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchH
Confidence 001122344455566677777777777777777777777888888899999999999
Q ss_pred HHHHHHHHH-HHHcCC--------cHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHH
Q psy6603 223 EAMKHYESL-IERNQE--------NTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEID 292 (724)
Q Consensus 223 ~A~~~~~~~-~~~~p~--------~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (724)
+|.+.+... +...|. .-.+|.++|.+ ++.|.+..+..+|.+++...-.
T Consensus 258 kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~---------------------- 315 (696)
T KOG2471|consen 258 KAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS---------------------- 315 (696)
T ss_pred HHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH----------------------
Confidence 998876543 222232 12356677777 7778888888888777651100
Q ss_pred HHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHH
Q psy6603 293 KYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTM 372 (724)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 372 (724)
.+... +.+... ..-.......+.|+.|..|...|++-
T Consensus 316 ----------------------------------------qL~~g--~~~~~~-~tls~nks~eilYNcG~~~Lh~grPl 352 (696)
T KOG2471|consen 316 ----------------------------------------QLRNG--LKPAKT-FTLSQNKSMEILYNCGLLYLHSGRPL 352 (696)
T ss_pred ----------------------------------------HHhcc--CCCCcc-eehhcccchhhHHhhhHHHHhcCCcH
Confidence 00000 000000 00001112236789999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy6603 373 KALNYINAAIDHTPTLIELFVTKGRIYKH 401 (724)
Q Consensus 373 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 401 (724)
.|.++|.++......+|..|..++.+...
T Consensus 353 ~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 353 LAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999999999999998753
No 179
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.84 E-value=1.1e-07 Score=91.53 Aligned_cols=119 Identities=20% Similarity=0.168 Sum_probs=108.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchH
Q psy6603 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 113 (724)
Q Consensus 34 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 113 (724)
+-..+...++++.|+.+|++..+.+|+ +...++.++...++-.+|+..+.+++...|.+...+...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344556678999999999999988875 56678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6603 114 GYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEA 155 (724)
Q Consensus 114 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 155 (724)
.|+.+.++++...|++...|..|+.+|...|+++.|+..++.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999976654
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.82 E-value=1e-07 Score=74.63 Aligned_cols=89 Identities=26% Similarity=0.223 Sum_probs=68.5
Q ss_pred HHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCcc---chHHHHHHHHhccccHHHHHHHHHHHhhhccc---cHHHHHHH
Q psy6603 523 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH---VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD---NIQIMRDL 596 (724)
Q Consensus 523 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 596 (724)
.+++.+|+++-..|+.++|+..|++++...+..+ .++..+|..+..+|++++|+..+++++...|+ +..+..-+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 4788899999999999999999999998765554 38888999999999999999999999988887 55565555
Q ss_pred HHHHHHhhhHhhHHH
Q psy6603 597 SLLQIQMRDLEGYRE 611 (724)
Q Consensus 597 ~~~~~~~~~~~~a~~ 611 (724)
+.++...|+.++|.+
T Consensus 82 Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 82 ALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHCCCHHHHHH
Confidence 554444444444443
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.82 E-value=1.8e-07 Score=94.73 Aligned_cols=136 Identities=12% Similarity=0.029 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCchhHHHHHHHHHhhc--------CCHHHHHHHHHHHHhh--CCC
Q psy6603 28 GETLAMKGLTLNCLGR---KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD--------KKYDEAIKCYRNALKW--EHD 94 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~a~~~--~p~ 94 (724)
+-.++..|..+...++ ...|+.+|+++++.+|++..++-.++.++... ++...+.....+++.+ +|.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 3445778887776655 77999999999999999999998888877543 2345666667776664 777
Q ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCC
Q psy6603 95 NIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 95 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p 164 (724)
++.++..+|......|++++|...+++++.++|+ ..++..+|.++...|++++|+..++++....+..|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 8889999999999999999999999999999994 78999999999999999999999988777665555
No 182
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.81 E-value=7e-08 Score=92.84 Aligned_cols=113 Identities=14% Similarity=0.200 Sum_probs=104.7
Q ss_pred ccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHH
Q psy6603 5 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKC 84 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 84 (724)
.++++.|+.+++++.+ .+|+ +...++.++...++-.+|+..+++++...|.+...+...+..+...++++.|+..
T Consensus 182 t~~~~~ai~lle~L~~--~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRE--RDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred cccHHHHHHHHHHHHh--cCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4789999999999999 5554 6777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Q psy6603 85 YRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQL 122 (724)
Q Consensus 85 ~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 122 (724)
.++++...|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999777643
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.79 E-value=3.3e-07 Score=92.90 Aligned_cols=153 Identities=11% Similarity=0.039 Sum_probs=102.2
Q ss_pred cCCCchhHH--HHHHHHHhhcCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchh
Q psy6603 57 NDLKSHVCW--HVYGLLQRSDKK---YDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRA 131 (724)
Q Consensus 57 ~~p~~~~~~--~~lg~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 131 (724)
..|.+..+| +..|.-+...++ ...|+.+|+++++++|++..++..++.++.....+. |...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-------------~~~~- 397 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-------------PLDE- 397 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-------------CccH-
Confidence 345555553 444655554443 667777888888888887777777766664322211 1000
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHH
Q psy6603 132 SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY 211 (724)
Q Consensus 132 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 211 (724)
++...+.....+.... +..|. .+.++..+|......|++++|...+++++.++|+ ..++..+
T Consensus 398 ------------~~l~~a~~~~~~a~al-~~~~~----~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~l 459 (517)
T PRK10153 398 ------------KQLAALSTELDNIVAL-PELNV----LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLL 459 (517)
T ss_pred ------------HHHHHHHHHHHHhhhc-ccCcC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHH
Confidence 1112222222222221 11222 3466777788888889999999999999999994 7799999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHcCCcHHH
Q psy6603 212 GALKLKLGQYNEAMKHYESLIERNQENTLY 241 (724)
Q Consensus 212 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 241 (724)
|.++...|++++|+..|++++.++|.++.+
T Consensus 460 G~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 460 GKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999999999999998863
No 184
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.79 E-value=4.6e-06 Score=79.02 Aligned_cols=226 Identities=23% Similarity=0.234 Sum_probs=178.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHhhcCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhcchHHHH
Q psy6603 41 LGRKEEAYEYVRRGLRNDLKS--HVCWHVYGLLQRSDKKYDEAIKCYRNALK--WEHDNIQIMRDLSLLQIQMRDLEGYR 116 (724)
Q Consensus 41 ~g~~~~A~~~~~~~l~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~la~~~~~~~~~~~A~ 116 (724)
.+.+..+...+...+...+.. .......+..+...+++..+...+...+. ..+.....+...+......+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 577788888888888877763 66677888888888889988888888886 67778888888888888888889999
Q ss_pred HHHHHHHHhCCCchhHHHHHHH-HHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6603 117 ETRYQLFMLRPTQRASWIGFAM-AYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLD 195 (724)
Q Consensus 117 ~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 195 (724)
..+.+++...+.........+. ++...|+++.|...+.++... .|. ...........+..+...++++.|+..+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL---DPE-LNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-ccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 9998888887776665666666 788889999999888887442 220 01244556666666788889999999999
Q ss_pred HHhhhhcc-HhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCC
Q psy6603 196 RFKEQIHD-KLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPK 270 (724)
Q Consensus 196 ~~~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~ 270 (724)
+++...+. ....+..++..+...++++.|...+..++...|.....+...+.. ...+..+.+...+.+.+...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99998888 688888899999999999999999999999888755555555544 3456788899899998888886
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.78 E-value=1.9e-08 Score=71.48 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy6603 41 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 101 (724)
Q Consensus 41 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 101 (724)
.|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444444333
No 186
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.78 E-value=3e-08 Score=71.67 Aligned_cols=71 Identities=20% Similarity=0.128 Sum_probs=65.1
Q ss_pred hhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHH
Q psy6603 528 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 598 (724)
Q Consensus 528 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 598 (724)
+..++.+.+++++|++++++++..+|+++..|..+|.++...|++.+|+..|+++++..|+++.+....+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999999887765543
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.78 E-value=1.7e-08 Score=71.80 Aligned_cols=66 Identities=21% Similarity=0.202 Sum_probs=53.8
Q ss_pred hhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHH
Q psy6603 533 NCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 598 (724)
Q Consensus 533 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 598 (724)
...|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 467888888888888888888888888888888888888888888888888888888777766554
No 188
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.76 E-value=2.5e-07 Score=81.76 Aligned_cols=108 Identities=15% Similarity=0.072 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH---VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMRDL 102 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l 102 (724)
.-.+..|.-++..|+|.+|...|...++..|++. .+++.||.+++.+|++++|...|..+++..|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3389999999999999999999999999999864 569999999999999999999999999987765 7789999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHH
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGF 136 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 136 (724)
|.+...+|+.++|..+|+++++..|+...+....
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999987765443
No 189
>KOG4234|consensus
Probab=98.76 E-value=2.3e-07 Score=76.29 Aligned_cols=115 Identities=16% Similarity=0.112 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch-----hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy6603 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH-----VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 102 (724)
+..+-.-|.-++..|+|++|..-|..++...|..+ .++.+.|.+..+++.++.|+....++++++|.+..++...
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 34566678889999999999999999999988754 3477789999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL 142 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 142 (724)
|.+|.++..+++|+..|.++++.+|....+.-..+++--.
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 9999999999999999999999999987776666554433
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.75 E-value=1.6e-05 Score=73.07 Aligned_cols=249 Identities=16% Similarity=0.144 Sum_probs=176.5
Q ss_pred ccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHH
Q psy6603 5 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKC 84 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 84 (724)
.|+|+.|.+-|+.++.+|.- ..--+..+-....+.|..+.|+.+-+++-...|.-+.++...-...+..|+|+.|++.
T Consensus 133 eG~~~~Ar~kfeAMl~dPEt--RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPET--RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHH--HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 58889999999988885511 1112222333446778889999999998888888888887777777888999999988
Q ss_pred HHHHHhh---CCCcHH---HHHHHHH-HHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6603 85 YRNALKW---EHDNIQ---IMRDLSL-LQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFR 157 (724)
Q Consensus 85 ~~~a~~~---~p~~~~---~~~~la~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 157 (724)
.+..... .++-.+ +-..-+. ...-.-+...|...-.++.++.|+...+-..-+..+++.|+..++-.+++.+-
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 8765543 232211 1111111 11123456778888889999999999988999999999999999999998877
Q ss_pred HhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH---HhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy6603 158 KTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDR---FKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIER 234 (724)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~---~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (724)
+.. | ++.++ ..|....--+.++.-+++ ...+.|++.......+..-..-|++..|..--+.+...
T Consensus 291 K~e---P-----HP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 291 KAE---P-----HPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred hcC---C-----ChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 655 3 23332 244443333444444444 44567999999999999999999999999999999998
Q ss_pred cCCcHHHHHHHHHH--hccCChHHHHHHHHHHHHhC
Q psy6603 235 NQENTLYYNKLVEA--KQLTNNDDIFQLLTHYISKY 268 (724)
Q Consensus 235 ~p~~~~~~~~l~~~--~~~~~~~~a~~~~~~~~~~~ 268 (724)
.|.... +..++.+ -..|+-.++...+.+++..-
T Consensus 359 ~pres~-~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 359 APRESA-YLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred CchhhH-HHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 886544 4445555 35699999999998888753
No 191
>KOG1914|consensus
Probab=98.74 E-value=0.00029 Score=68.07 Aligned_cols=214 Identities=14% Similarity=0.039 Sum_probs=126.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHccC-ccchhhhhhHHHHHHHcC---
Q psy6603 376 NYINAAIDHTPTLIELFVTKGRIYKHAGD--------------VLEAYKWLDEAQSLD-TADRYINSKCAKYMLRAN--- 437 (724)
Q Consensus 376 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~g--- 437 (724)
-.+++++..-+-.++.|+..+.-+...++ .+++..+|++++..- ..+..++..++..--..-
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 35666776667777777776665555555 677788888877642 223333333333222211
Q ss_pred CHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCC
Q psy6603 438 LIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPK 517 (724)
Q Consensus 438 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 517 (724)
..+...+.+++++........- +|..+ +-.+. ...-.+.|..+|......+.
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tL------v~~~~-mn~ir---------------------R~eGlkaaR~iF~kaR~~~r 397 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTL------VYCQY-MNFIR---------------------RAEGLKAARKIFKKAREDKR 397 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCce------ehhHH-HHHHH---------------------HhhhHHHHHHHHHHHhhccC
Confidence 2444455555555422211110 01000 01111 11224556666666666655
Q ss_pred CCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhh--ccc-cHHHHH
Q psy6603 518 YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW--EHD-NIQIMR 594 (724)
Q Consensus 518 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~-~~~~~~ 594 (724)
.+.+..+...+ .-|...++.+-|..+|+-.++..++++..-+.....+...|+-..|...|++++.. .|+ ...+|.
T Consensus 398 ~~hhVfVa~A~-mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~ 476 (656)
T KOG1914|consen 398 TRHHVFVAAAL-MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWD 476 (656)
T ss_pred CcchhhHHHHH-HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHH
Confidence 55333222222 23455788889999999999999999888888888888888889999999999886 333 346777
Q ss_pred HHHHHHHHhhhHhhHHHHHHHHHh
Q psy6603 595 DLSLLQIQMRDLEGYREGVSAMEN 618 (724)
Q Consensus 595 ~l~~~~~~~~~~~~a~~~~~~~~~ 618 (724)
.+..--...|+...+.+.-++...
T Consensus 477 r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 477 RMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 777767777888777776665443
No 192
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.73 E-value=3.2e-05 Score=73.17 Aligned_cols=224 Identities=24% Similarity=0.263 Sum_probs=190.6
Q ss_pred cchhhHHHHHHHhhCCCCCCC--hHHHHHHHHHHHhccCCHHHHHHHHHHHHH--cCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 6 KQYKNGLKFAKQILTNPKYAE--HGETLAMKGLTLNCLGRKEEAYEYVRRGLR--NDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 6 ~~~~~A~~~~~~~l~~p~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
+.+..+...+...+. ..+. ........+..+...+++..+...+...+. ..+.....+...|......+++..+
T Consensus 37 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 37 GELAEALELLEEALE--LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred hhHHHHHHHHHHHHh--cCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHH
Confidence 345566677777776 3343 367888999999999999999999999997 6888888899999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHH-HHHHhcchHHHHHHHHHHHHhCC---CchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSL-LQIQMRDLEGYRETRYQLFMLRP---TQRASWIGFAMAYHLLHDFDMACNILEAFR 157 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 157 (724)
+..+..++...+.+.......+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 115 LELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 99999999988887666666666 89999999999999999988777 456677777777889999999999998887
Q ss_pred HhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q psy6603 158 KTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQE 237 (724)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 237 (724)
...+.. ....+..++..+...++++.|+..+..++...|.....+..++..+...+.++++...+.+++...|.
T Consensus 195 ~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLNPDD------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhCccc------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 776331 35678889999999999999999999999999987777788888888788899999999999999987
No 193
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.72 E-value=7.7e-08 Score=69.54 Aligned_cols=68 Identities=21% Similarity=0.125 Sum_probs=46.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy6603 35 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 35 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 102 (724)
..++...+++++|+.++++++..+|+++..|..+|.++...|++.+|+..|+++++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777777777777666554433
No 194
>KOG3616|consensus
Probab=98.72 E-value=0.00045 Score=69.17 Aligned_cols=159 Identities=11% Similarity=0.059 Sum_probs=101.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHH
Q psy6603 365 YDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEE 444 (724)
Q Consensus 365 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 444 (724)
.....++.+|+..++..-.... ....|-..+.-|...|+++-|.+.|.++-.. ......|.+.|++++|..
T Consensus 742 ai~akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~~~--------~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEADLF--------KDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcchh--------HHHHHHHhccccHHHHHH
Confidence 3345778888877775543322 2334556677788888899888888765332 234567778888888888
Q ss_pred HHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCC--------
Q psy6603 445 TCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNP-------- 516 (724)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------- 516 (724)
+-.+....... +..+...+.-+...|+|.+|.++|-.+ |..++|+.+|+....+.
T Consensus 813 la~e~~~~e~t----------~~~yiakaedldehgkf~eaeqlyiti-------~~p~~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 813 LAEECHGPEAT----------ISLYIAKAEDLDEHGKFAEAEQLYITI-------GEPDKAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHhcCchhH----------HHHHHHhHHhHHhhcchhhhhheeEEc-------cCchHHHHHHHhhCcchHHHHHHHH
Confidence 77766531111 112222466677888888888876544 55666666665433221
Q ss_pred CCCc-hhHHHHhhhhHhhhcCChHHHHHHHHHhh
Q psy6603 517 KYAE-HGETLAMKGLTLNCLGRKEEAYEYVRRGL 549 (724)
Q Consensus 517 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 549 (724)
.+++ -.++...+|.-+...|+...|...|-++-
T Consensus 876 ~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 876 HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 1122 23467788888889999999988887664
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.71 E-value=5.5e-07 Score=70.53 Aligned_cols=92 Identities=17% Similarity=0.033 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC---chhHHHHHH
Q psy6603 64 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT---QRASWIGFA 137 (724)
Q Consensus 64 ~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la 137 (724)
+++.+|.++-..|+.++|+..|++++...+.. ..++..+|.++..+|++++|+..+++.+...|+ +......++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45566666666666666666666666654333 335666666666666666666666666666665 555566666
Q ss_pred HHHHHcCCHHHHHHHHHH
Q psy6603 138 MAYHLLHDFDMACNILEA 155 (724)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~ 155 (724)
.++...|++++|+..+-.
T Consensus 83 l~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 677777777777655433
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.70 E-value=4.2e-07 Score=72.06 Aligned_cols=105 Identities=13% Similarity=-0.004 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH---HHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH---VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ---IMR 100 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~ 100 (724)
.+..++..|...++.|+|.+|++.|+.+....|... .+...+|.+++..|++++|+..+++-++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 357888999999999999999999999988877654 45788899999999999999999999999988754 788
Q ss_pred HHHHHHHHhcc---------------hHHHHHHHHHHHHhCCCchh
Q psy6603 101 DLSLLQIQMRD---------------LEGYRETRYQLFMLRPTQRA 131 (724)
Q Consensus 101 ~la~~~~~~~~---------------~~~A~~~~~~~l~~~p~~~~ 131 (724)
..|.++..+.. ...|...|++++...|++.-
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 88888877665 66667777777777776543
No 197
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.68 E-value=3.1e-07 Score=81.17 Aligned_cols=97 Identities=16% Similarity=0.062 Sum_probs=79.2
Q ss_pred hchHHHHHHHHH-HhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccc---hHHHHHHHHhccccHHHH
Q psy6603 500 KQYKNGLKFAKQ-ILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV---CWHVYGLLQRSDKKYDEA 575 (724)
Q Consensus 500 ~~~~~A~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~A 575 (724)
|+|..|...|.. +...|+++-.+.++++||.+++.+|++++|...|..+++..|+++. +++.+|.+...+|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 344555555544 7788888888889999999999999999999999999988776654 789999999999999999
Q ss_pred HHHHHHHhhhccccHHHHHHH
Q psy6603 576 IKCYRNALKWEHDNIQIMRDL 596 (724)
Q Consensus 576 ~~~~~~al~~~p~~~~~~~~l 596 (724)
...|+++++..|+.+.+...-
T Consensus 235 ~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 235 CATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999888776543
No 198
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.67 E-value=0.0011 Score=70.52 Aligned_cols=318 Identities=15% Similarity=0.115 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHhhCCC----cHHHHHHHHHHHH-HhcchHHHHHHHHHHHHhCCC--ch----hHHHHHHHHHHHcCCH
Q psy6603 78 YDEAIKCYRNALKWEHD----NIQIMRDLSLLQI-QMRDLEGYRETRYQLFMLRPT--QR----ASWIGFAMAYHLLHDF 146 (724)
Q Consensus 78 ~~~A~~~~~~a~~~~p~----~~~~~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~--~~----~~~~~la~~~~~~g~~ 146 (724)
...|+.+++-+++..+- ...+...+|.++. ...+++.|...+.+++.+... .. .+...++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 44577788877742221 2346778888777 788888999888888766533 22 2345668888888887
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh--ccHhh----HHHHHHHHHHHcCC
Q psy6603 147 DMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI--HDKLT----VEETYGALKLKLGQ 220 (724)
Q Consensus 147 ~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~----~~~~la~~~~~~g~ 220 (724)
. |...+++.++.....+. ........+.........+++..|++.++...... +.++. +....+.+....+.
T Consensus 117 ~-a~~~l~~~I~~~~~~~~-~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGH-SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred H-HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 7 88888887777655333 11111122222334444489999999999887765 23332 23334566677787
Q ss_pred hHHHHHHHHHHHHHcC------C----cHHHHHHHHHH---hccCChHHHHHHHHHH---HHhCCCCC------cccccc
Q psy6603 221 YNEAMKHYESLIERNQ------E----NTLYYNKLVEA---KQLTNNDDIFQLLTHY---ISKYPKAT------VPKRLS 278 (724)
Q Consensus 221 ~~~A~~~~~~~~~~~p------~----~~~~~~~l~~~---~~~~~~~~a~~~~~~~---~~~~~~~~------~~~~~~ 278 (724)
.+++++...++..... + ...++..+..+ +..|++..+...++++ +....... ....+.
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~ 274 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIP 274 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEE
Confidence 8888888887744321 1 12233333332 4567766666555444 33222211 000000
Q ss_pred ccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHH
Q psy6603 279 LNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVY 358 (724)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 358 (724)
+....+. .. ..+.+..+. =....+..+.++
T Consensus 275 l~~~~~~-~~-----------~~~~~~~f~--------------------------------------wl~~~~l~~L~y 304 (608)
T PF10345_consen 275 LNIGEGS-SN-----------SGGTPLVFS--------------------------------------WLPKEELYALVY 304 (608)
T ss_pred eeccccc-cc-----------CCCceeEEe--------------------------------------ecCHHHHHHHHH
Confidence 0000000 00 000000000 000011122233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC-------C---C----------------hHHHHHHHHHHHHHcCCHHHHHHHH
Q psy6603 359 HYLAQHYDHLGDTMKALNYINAAIDHT-------P---T----------------LIELFVTKGRIYKHAGDVLEAYKWL 412 (724)
Q Consensus 359 ~~la~~~~~~~~~~~A~~~~~~~l~~~-------p---~----------------~~~~~~~l~~~~~~~g~~~~A~~~~ 412 (724)
+.-|.+....+..++|.++++++++.- | . .....+..+.+..-.|++..|...+
T Consensus 305 ~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 305 FLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 444555555565556666666655321 1 0 0123455667777888998998888
Q ss_pred HHHHccC---cc------chhhhhhHHHHHHHcCCHHHHHHHHH
Q psy6603 413 DEAQSLD---TA------DRYINSKCAKYMLRANLIKEAEETCS 447 (724)
Q Consensus 413 ~~a~~~~---~~------~~~~~~~~~~~~~~~g~~~~A~~~~~ 447 (724)
+.+.... |. .+.+.+..|..+...|+.+.|...|.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 8777652 22 36677788888899999999999998
No 199
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.66 E-value=9e-07 Score=70.24 Aligned_cols=87 Identities=17% Similarity=0.096 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhh---
Q psy6603 130 RASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLT--- 206 (724)
Q Consensus 130 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--- 206 (724)
+..++.-|...+..|+|.+|++.|+.+....+..|- ...+.+.++.+|+..|++++|+..+++.++++|.++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y----a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY----AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 345566666666677777777666666666644443 4456666677777777777777777777777766643
Q ss_pred HHHHHHHHHHHcCC
Q psy6603 207 VEETYGALKLKLGQ 220 (724)
Q Consensus 207 ~~~~la~~~~~~g~ 220 (724)
+++..|.++..+..
T Consensus 86 a~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 86 AYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHHhh
Confidence 56666666665543
No 200
>KOG4648|consensus
Probab=98.65 E-value=2.5e-08 Score=89.04 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=91.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCH
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLI 439 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~ 439 (724)
..|.-|++.|.|++|+.+|.+++..+|.++..+.+.+..|+++..+..|...++.++.++..-..++...+.+-..+|+.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 56888999999999999999999999999999999999999999999999999999999988788888889999999999
Q ss_pred HHHHHHHHHhhhcccCcc
Q psy6603 440 KEAEETCSKFTREGVSAM 457 (724)
Q Consensus 440 ~~A~~~~~~~~~~~~~~~ 457 (724)
.+|.+-++.++...|...
T Consensus 182 ~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhHHHHHhhCcccH
Confidence 999999999999887743
No 201
>KOG2471|consensus
Probab=98.63 E-value=1.5e-05 Score=75.51 Aligned_cols=117 Identities=11% Similarity=0.120 Sum_probs=97.1
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHH-HHcCC------Cch--hHHHHHHHHHhhcCCHHHHHHHHHHHHhh-----
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRG-LRNDL------KSH--VCWHVYGLLQRSDKKYDEAIKCYRNALKW----- 91 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~-l~~~p------~~~--~~~~~lg~~~~~~g~~~~A~~~~~~a~~~----- 91 (724)
+.+.+++..+..++..|++..|.+.+... +...| ... ..|.++|.++++.|.|.-+..+|.+|++.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999988754 22222 222 23789999999999999999999999961
Q ss_pred ----CC---------CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy6603 92 ----EH---------DNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL 142 (724)
Q Consensus 92 ----~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 142 (724)
.| ..-.++++.|..+...|++-.|.++|.++....-.+|..|..++.+...
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 11 2356899999999999999999999999999999999999999998765
No 202
>KOG4234|consensus
Probab=98.63 E-value=6.6e-07 Score=73.69 Aligned_cols=113 Identities=14% Similarity=0.099 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHH
Q psy6603 134 IGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGA 213 (724)
Q Consensus 134 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~ 213 (724)
-.-|.-++..|+|++|..-|..++...+..+. ...+.++.+.|.++.+++.++.|+..+.++++++|.+..++...+.
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 34477778888888888877777776654443 4466678889999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy6603 214 LKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA 248 (724)
Q Consensus 214 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 248 (724)
+|.++.++++|+..|.++++.+|....+...+..+
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999999999888776666655
No 203
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.60 E-value=1.2e-05 Score=65.63 Aligned_cols=146 Identities=15% Similarity=0.130 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHhcchHHHHHHHHH
Q psy6603 43 RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK-WEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121 (724)
Q Consensus 43 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 121 (724)
+.+.+..-..+.+...|. ..-.+.+|......|++.+|...|++++. +..+++..+..++...+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 444444444444455554 33356778888888888888888887775 3456677777788888888888888888888
Q ss_pred HHHhCCC--chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6603 122 LFMLRPT--QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRF 197 (724)
Q Consensus 122 ~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 197 (724)
+.+.+|. .+.....+++.+...|++.+|...|+.+..-. | .+......+..+.++|+.++|...+..+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y---p-----g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY---P-----GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC---C-----CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 8777775 55667777788888888888877777765544 2 2344555566666777666665544443
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.58 E-value=1.5e-05 Score=65.14 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=108.4
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHcCCHHHHHH
Q psy6603 73 RSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFM-LRPTQRASWIGFAMAYHLLHDFDMACN 151 (724)
Q Consensus 73 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~ 151 (724)
.+.=+.+.+..-..+.+...|. ..-.+.||....+.|++.+|...|++++. +..+++..+..+++..+..+++..|..
T Consensus 67 ~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~ 145 (251)
T COG4700 67 QQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQ 145 (251)
T ss_pred HHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence 3333444444444444554444 34566788888888888888888888775 456677888888888888888888887
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6603 152 ILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESL 231 (724)
Q Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 231 (724)
.++...+.. |. ...++..+..|.++...|.+.+|...|+.++...|+ +.+....+..+.++|+..+|...+..+
T Consensus 146 tLe~l~e~~---pa--~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 146 TLEDLMEYN---PA--FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhhcC---Cc--cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 777755443 43 234456667788888888888888888888887774 455667778888888888777766655
Q ss_pred HHH
Q psy6603 232 IER 234 (724)
Q Consensus 232 ~~~ 234 (724)
.+.
T Consensus 220 ~d~ 222 (251)
T COG4700 220 VDT 222 (251)
T ss_pred HHH
Confidence 543
No 205
>KOG0985|consensus
Probab=98.54 E-value=0.0021 Score=67.20 Aligned_cols=215 Identities=15% Similarity=0.085 Sum_probs=137.9
Q ss_pred cchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHH----------------------HHHHHHHHh
Q psy6603 421 ADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQ----------------------TECALAYQR 478 (724)
Q Consensus 421 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~ 478 (724)
.|+.-......+++..+-..+-++++++++-......+.. ..+...+. -.+|.+-..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~-nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENR-NLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccch-hhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 3455555667888888889999999999876443222211 11111100 125666677
Q ss_pred hcchhhhhhhhhhhh------hHhhhh-hchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc
Q psy6603 479 LGRWGDTLKKCHEVD------RKCYEH-KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN 551 (724)
Q Consensus 479 ~g~~~~A~~~~~~~~------~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 551 (724)
.+-+++|..+|.+.. ..+.+. +..+.|.+..+.+.. +.+|..+|.+..+.|...+|++.|-++
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~-------p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNE-------PAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCC-------hHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 777888888877554 344444 777777777666533 459999999999999999999999876
Q ss_pred CCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHH--------------------
Q psy6603 552 DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRE-------------------- 611 (724)
Q Consensus 552 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~-------------------- 611 (724)
+++..+.....+..+.|.|++-+.++..+-+...+ +.+-..|...|.+.++..+..+
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhh
Confidence 56677888888899999999999999888763221 1222233333334433322222
Q ss_pred -HHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHH
Q psy6603 612 -GVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEV 651 (724)
Q Consensus 612 -~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 651 (724)
.|+.+.....+-+.| ..||..+...|+|..|...-+++
T Consensus 1208 ~~y~aAkl~y~~vSN~--a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNVSNF--AKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHhhhc
Confidence 122222222333555 56777888888888888766544
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.53 E-value=3.8e-07 Score=86.91 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccc---hHHHHHHHHhccccHHHHHHHHHHHhhhc
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV---CWHVYGLLQRSDKKYDEAIKCYRNALKWE 586 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 586 (724)
..|+++.+++++|.+|...|++++|+..|+++++++|++.. +|+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46778899999999999999999999999999999999986 49999999999999999999999999973
No 207
>KOG1586|consensus
Probab=98.52 E-value=6.6e-05 Score=64.02 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=59.6
Q ss_pred HHhhhhHhhhc-CChHHHHHHHHHhhhcCCCc------cchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHH--
Q psy6603 525 LAMKGLTLNCL-GRKEEAYEYVRRGLRNDLKS------HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD-- 595 (724)
Q Consensus 525 ~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-- 595 (724)
+..+|.+|..- .++++|+..|+++-+..... ..++...+..-..+++|.+|+..|+++....-+++...+.
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 44556666554 77888888888777653221 1256667777778899999999999998876666544333
Q ss_pred -----HHHHHHHhhhHhhHHHHHHHHHhhhh
Q psy6603 596 -----LSLLQIQMRDLEGYREGVSAMENLNE 621 (724)
Q Consensus 596 -----l~~~~~~~~~~~~a~~~~~~~~~~~~ 621 (724)
-|.|++...|.-.+..+++..+...|
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 33444444444444444444444443
No 208
>KOG2796|consensus
Probab=98.51 E-value=7.4e-05 Score=64.94 Aligned_cols=201 Identities=11% Similarity=0.115 Sum_probs=141.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchH
Q psy6603 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 113 (724)
Q Consensus 34 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 113 (724)
-|.+....|+..+.+.-+......-. .+..........+..+..+++-+. .+.+.++.++.-.+.|.
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~V~-------~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~ 194 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTVVS-------KILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYV 194 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHH-------HHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhh
Confidence 34455556666665555444332100 111112222222445555555433 45677778888888888
Q ss_pred HHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q psy6603 114 GYRETRYQLFMLR-PTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVK 192 (724)
Q Consensus 114 ~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 192 (724)
-....+.++++.+ |..+.....++++.++.|+.+.|...++...+....-.+ ......+....+.++.-.+++..|..
T Consensus 195 iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~-~q~~~~V~~n~a~i~lg~nn~a~a~r 273 (366)
T KOG2796|consen 195 LSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG-LQGKIMVLMNSAFLHLGQNNFAEAHR 273 (366)
T ss_pred hhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc-cchhHHHHhhhhhheecccchHHHHH
Confidence 8888888888888 557778888899999999999998888876554322221 12244566677888888999999999
Q ss_pred HHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcH---HHHHHHHHH
Q psy6603 193 HLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENT---LYYNKLVEA 248 (724)
Q Consensus 193 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~ 248 (724)
.+.+.+..+|.++.+..+.|.|+.-.|+...|++.++.++...|... ....++..+
T Consensus 274 ~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 274 FFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred HHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999754 344444444
No 209
>KOG4555|consensus
Probab=98.49 E-value=7.7e-06 Score=62.26 Aligned_cols=100 Identities=18% Similarity=0.140 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc----HHHHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN----IQIMRDLSL 104 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~la~ 104 (724)
..+-..|..+...|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+..+++++++..+. -.++...|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3556778889999999999999999999999999999999999999999999999999999985443 347888999
Q ss_pred HHHHhcchHHHHHHHHHHHHhCCC
Q psy6603 105 LQIQMRDLEGYRETRYQLFMLRPT 128 (724)
Q Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~p~ 128 (724)
+|...|+-+.|...|+.+.++...
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCH
Confidence 999999999999999888777654
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.49 E-value=1.5e-07 Score=68.97 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=55.3
Q ss_pred CchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc----CCCc---cchHHHHHHHHhccccHHHHHHHHHHHhhhc
Q psy6603 519 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN----DLKS---HVCWHVYGLLQRSDKKYDEAIKCYRNALKWE 586 (724)
Q Consensus 519 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 586 (724)
|..+.++.++|.++...|++++|+.+|++++++ .+++ ..++.++|.++...|++++|+++|++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 445668999999999999999999999999865 2222 3388899999999999999999999998764
No 211
>KOG0985|consensus
Probab=98.48 E-value=0.0029 Score=66.19 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHH
Q psy6603 389 IELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWF 468 (724)
Q Consensus 389 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (724)
++-+-.+...|...|-+++-+..++.++-+.....-++..+|..|.+- ++++-.+.++-....- +....+......+.
T Consensus 1279 adeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRv-NipKviRA~eqahl 1356 (1666)
T KOG0985|consen 1279 ADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRV-NIPKVIRAAEQAHL 1356 (1666)
T ss_pred hHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhc-chHHHHHHHHHHHH
Confidence 444556677788899999999999999998888777888888777653 3444444444332210 00000111111233
Q ss_pred HHHHHHHHHhhcchhhhhh
Q psy6603 469 QTECALAYQRLGRWGDTLK 487 (724)
Q Consensus 469 ~~~~~~~~~~~g~~~~A~~ 487 (724)
+.++..+|.+-..|+.|.-
T Consensus 1357 W~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1357 WSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHhhhhhhHHHH
Confidence 3446666666666666643
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.45 E-value=8.3e-07 Score=84.66 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=52.3
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhH---HHHHHHHHhhcCCHHHHHHHHHHHHhh
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVC---WHVYGLLQRSDKKYDEAIKCYRNALKW 91 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~a~~~ 91 (724)
.+|+++.+++.+|.+++..|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677777777777777777777777777777777777643 777777777777777777777777775
No 213
>KOG1585|consensus
Probab=98.44 E-value=0.00012 Score=62.89 Aligned_cols=209 Identities=13% Similarity=0.063 Sum_probs=123.8
Q ss_pred CCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHH------HHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH
Q psy6603 24 YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCW------HVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 97 (724)
Q Consensus 24 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~------~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 97 (724)
....+..+..-+.++....++++|...+.++.+-..++...| -..|.+......+.++..+|+++..
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~------- 99 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE------- 99 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------
Confidence 333445555556666666777777777777765444433222 2234444444555555555555543
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHH
Q psy6603 98 IMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQ 177 (724)
Q Consensus 98 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 177 (724)
.|.+.|..+.|-..++++- -....-+.++|+++|++....+..... ...-.+.+-..
T Consensus 100 -------lY~E~GspdtAAmaleKAa---------------k~lenv~Pd~AlqlYqralavve~~dr-~~ma~el~gk~ 156 (308)
T KOG1585|consen 100 -------LYVECGSPDTAAMALEKAA---------------KALENVKPDDALQLYQRALAVVEEDDR-DQMAFELYGKC 156 (308)
T ss_pred -------HHHHhCCcchHHHHHHHHH---------------HHhhcCCHHHHHHHHHHHHHHHhccch-HHHHHHHHHHh
Confidence 3444555555544444332 233445666777777776666544332 11223444556
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhh------ccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHH----cCCcHHHHHHHHH
Q psy6603 178 SMVIQDSGDLEEAVKHLDRFKEQI------HDKLTVEETYGALKLKLGQYNEAMKHYESLIER----NQENTLYYNKLVE 247 (724)
Q Consensus 178 ~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~ 247 (724)
+.++.+...+.+|-..+.+-.... |+....+.....++.-..+|..|..+++...+. .|++.....+|..
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 778888888888877776644322 333334555556666667999999999987665 3555667777777
Q ss_pred HhccCChHHHHHHHH
Q psy6603 248 AKQLTNNDDIFQLLT 262 (724)
Q Consensus 248 ~~~~~~~~~a~~~~~ 262 (724)
.+..|+.++...++.
T Consensus 237 ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 237 AYDEGDIEEIKKVLS 251 (308)
T ss_pred HhccCCHHHHHHHHc
Confidence 888899888776654
No 214
>KOG4555|consensus
Probab=98.38 E-value=5.3e-06 Score=63.12 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=80.7
Q ss_pred HHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccH----HHHHHHHHH
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI----QIMRDLSLL 599 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~ 599 (724)
.+-..|.++...|+.+.|++.|.+++.+.|..+.+|++.+..+.-.|+.++|++.+++++++..+.. .++...|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 4566788889999999999999999999999999999999999999999999999999999754432 466677777
Q ss_pred HHHhhhHhhHHHHHHHHHhhh
Q psy6603 600 QIQMRDLEGYREGVSAMENLN 620 (724)
Q Consensus 600 ~~~~~~~~~a~~~~~~~~~~~ 620 (724)
|..+|+-+.|+..|+.+..+.
T Consensus 125 yRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhC
Confidence 777787777777777655443
No 215
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.34 E-value=7.6e-06 Score=67.17 Aligned_cols=93 Identities=13% Similarity=0.008 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcC----------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--
Q psy6603 44 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK----------KYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD-- 111 (724)
Q Consensus 44 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g----------~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~-- 111 (724)
++.|.+.++.....+|.+++.++.-|.++..+. -+++|+.-|++|+.++|+..+++..+|.++...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 455666666666666666666666555554432 24556666777777777777777777777665543
Q ss_pred ---------hHHHHHHHHHHHHhCCCchhHHHHH
Q psy6603 112 ---------LEGYRETRYQLFMLRPTQRASWIGF 136 (724)
Q Consensus 112 ---------~~~A~~~~~~~l~~~p~~~~~~~~l 136 (724)
+++|..+|+++...+|++...+..|
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 6777788888888888877655444
No 216
>KOG1258|consensus
Probab=98.33 E-value=0.0044 Score=61.54 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=83.5
Q ss_pred CchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-Cccchhhhh
Q psy6603 349 EPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL-DTADRYINS 427 (724)
Q Consensus 349 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~ 427 (724)
.+.....|. .-...-...|+++...-.|++++--.....+.|+..+......|+.+-|...+.++.++ .|+.+.+..
T Consensus 293 ~~aql~nw~--~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 293 DQAQLKNWR--YYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred cHHHHHHHH--HHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHH
Confidence 334444443 34555667899999999999999988889999999999999999999999999988887 556677777
Q ss_pred hHHHHHHHcCCHHHHHHHHHHhhhcc
Q psy6603 428 KCAKYMLRANLIKEAEETCSKFTREG 453 (724)
Q Consensus 428 ~~~~~~~~~g~~~~A~~~~~~~~~~~ 453 (724)
..+..--..|++..|..++++..+..
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~ 396 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEY 396 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhC
Confidence 77777778889999998888887654
No 217
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.33 E-value=2.2e-06 Score=70.19 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=72.5
Q ss_pred hhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCC
Q psy6603 8 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGR----------KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKK 77 (724)
Q Consensus 8 ~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 77 (724)
|+.|.+.++.... .+|.+++.++.-|.++..+.+ +++|+.-|++++.++|+...+++.+|.++...+.
T Consensus 7 FE~ark~aea~y~--~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYA--KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 6778888888777 678999999999998876643 4678888899999999999999999999987653
Q ss_pred -----------HHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy6603 78 -----------YDEAIKCYRNALKWEHDNIQIMRDLS 103 (724)
Q Consensus 78 -----------~~~A~~~~~~a~~~~p~~~~~~~~la 103 (724)
|++|..+|++|...+|++......|.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 78899999999999999876544443
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.33 E-value=0.0014 Score=66.43 Aligned_cols=173 Identities=15% Similarity=0.113 Sum_probs=131.3
Q ss_pred hchHHHHHHHHHHhcCCCCCchhH-H-----HHhhhhHhh----hcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhcc
Q psy6603 500 KQYKNGLKFAKQILTNPKYAEHGE-T-----LAMKGLTLN----CLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD 569 (724)
Q Consensus 500 ~~~~~A~~~~~~~~~~~~~~~~~~-~-----~~~l~~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 569 (724)
|+-+.+++.+......+. -..+- . |+....... .....+.|.+.+....+..|++....+..|.++...
T Consensus 202 gdR~~GL~~L~~~~~~~~-i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 202 GDRELGLRLLWEASKSEN-IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CcHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 677788887766444322 12111 1 111111111 345678899999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhhcccc----HHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCCh----
Q psy6603 570 KKYDEAIKCYRNALKWEHDN----IQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRW---- 641 (724)
Q Consensus 570 ~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---- 641 (724)
|+.++|++.|++++...+.- .-.++.+++++..+.+|++|.+.+..+.+.+.-+.+++.+..|-|+...|+.
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~ 360 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAK 360 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhh
Confidence 99999999999998643332 3567889999999999999999999999988888888889999999999999
Q ss_pred ---hHHHHHHHHHHHHHhhhhcccchhHHHHHhhh
Q psy6603 642 ---GDTLKKCHEVDRHFSEIIEDQFDFHTYCMRKM 673 (724)
Q Consensus 642 ---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (724)
++|.+.|.++-.......-.......+..|+.
T Consensus 361 ~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~ 395 (468)
T PF10300_consen 361 EHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKA 395 (468)
T ss_pred hhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHH
Confidence 88888888887766554334445566666663
No 219
>KOG1586|consensus
Probab=98.32 E-value=0.00035 Score=59.81 Aligned_cols=185 Identities=15% Similarity=0.055 Sum_probs=114.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh----C-CCc-HHHHHHHHHHHHHhcchH
Q psy6603 40 CLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW----E-HDN-IQIMRDLSLLQIQMRDLE 113 (724)
Q Consensus 40 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~----~-p~~-~~~~~~la~~~~~~~~~~ 113 (724)
..+++++|.++|.++-. .|...++|..|=..|-++-+. + ..+ ...+...+.+| +.++++
T Consensus 26 g~~k~eeAadl~~~Aan--------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~ 90 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAAN--------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPE 90 (288)
T ss_pred CCcchHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChH
Confidence 34578888888877632 233333333333333333322 1 111 22333444444 334677
Q ss_pred HHHHHHHHHHHhCCCch------hHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCC
Q psy6603 114 GYRETRYQLFMLRPTQR------ASWIGFAMAYHLL-HDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD 186 (724)
Q Consensus 114 ~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 186 (724)
+|+.++++++++..+-. .-+..+|.+|... .++++|+..|+.+-+-...... .......++..+..-...++
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees-~ssANKC~lKvA~yaa~leq 169 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES-VSSANKCLLKVAQYAAQLEQ 169 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh-hhhHHHHHHHHHHHHHHHHH
Confidence 77777777766654422 2344667777665 8888999888887766644332 12234456666777778899
Q ss_pred HHHHHHHHHHHhhhhccHh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHH
Q psy6603 187 LEEAVKHLDRFKEQIHDKL-------TVEETYGALKLKLGQYNEAMKHYESLIERNQENTL 240 (724)
Q Consensus 187 ~~~A~~~~~~~~~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 240 (724)
|.+|+..|+++....-++. ..++.-|.|++...+.-.+...+++-.+.+|...+
T Consensus 170 Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 9999999999877654442 23455677778778888888888888888987654
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.31 E-value=2.2e-06 Score=62.74 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=54.7
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q psy6603 127 PTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI 201 (724)
Q Consensus 127 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 201 (724)
|+-..++..+|.+|...|++++|+..|+++++.....++..+....++..+|.++...|++++|++.+++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 334567788888888889999998888888777544443233456777888888888888888888888887653
No 221
>KOG4507|consensus
Probab=98.30 E-value=0.00019 Score=69.88 Aligned_cols=104 Identities=19% Similarity=0.200 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHH
Q psy6603 355 LWVYHYLAQHYDH-LGDTMKALNYINAAIDHTPTL-IELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKY 432 (724)
Q Consensus 355 ~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 432 (724)
.|+..++|-+|++ .|+...|++++..++...|.. ......++.++.+.|-..+|-..+.+++.+....+...+.+|..
T Consensus 606 ~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~ 685 (886)
T KOG4507|consen 606 IWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNA 685 (886)
T ss_pred eEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchh
Confidence 4555566666665 799999999999999999863 33578899999999999999999999999998888888999999
Q ss_pred HHHcCCHHHHHHHHHHhhhcccCccC
Q psy6603 433 MLRANLIKEAEETCSKFTREGVSAME 458 (724)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 458 (724)
++...+.+.|++.|+.+++.++....
T Consensus 686 ~l~l~~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 686 YLALKNISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred HHHHhhhHHHHHHHHHHHhcCCCChh
Confidence 99999999999999999998877544
No 222
>KOG2796|consensus
Probab=98.26 E-value=6e-05 Score=65.48 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhC------CCcHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRND-LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE------HDNIQIMRD 101 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~ 101 (724)
.+.+.+..++...|.|.-.+..++++++.+ |..+.....+|.+.++.|+.+.|..+|+++-+.. ..+..+..+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 356778888999999999999999999988 5677778899999999999999999999654332 234557778
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 102 LSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 102 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
.+.++.-.+++.+|...+.+++..+|.++.+..+.|.|+.-.|+..+|++.++.+....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 88899999999999999999999999999999999999999999999999988876665
No 223
>KOG4642|consensus
Probab=98.24 E-value=8.3e-06 Score=69.60 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=47.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcch
Q psy6603 33 MKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDL 112 (724)
Q Consensus 33 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~ 112 (724)
..|..++...+|..|+..|.+++.++|..+..|.+.+.++++..+++.+.....+++++.|+.+...+.+|.+......+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHH
Q psy6603 113 EGYRETRYQL 122 (724)
Q Consensus 113 ~~A~~~~~~~ 122 (724)
++|+..+.++
T Consensus 95 ~eaI~~Lqra 104 (284)
T KOG4642|consen 95 DEAIKVLQRA 104 (284)
T ss_pred cHHHHHHHHH
Confidence 5555555444
No 224
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.23 E-value=0.0054 Score=58.41 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=40.9
Q ss_pred HHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHH
Q psy6603 564 LLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAM 616 (724)
Q Consensus 564 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 616 (724)
.-+...|+|.++.-+-.=..++.| ++.++..+|.+.....+|++|-+.+..+
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 456678888888888888888888 8888988998888888877776655543
No 225
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.22 E-value=0.013 Score=62.45 Aligned_cols=188 Identities=13% Similarity=0.071 Sum_probs=121.1
Q ss_pred hhHHHHHHHhhCCCCCCCh--HHHHHHHHHHHh-ccCCHHHHHHHHHHHHHcCCC--chh----HHHHHHHHHhhcCCHH
Q psy6603 9 KNGLKFAKQILTNPKYAEH--GETLAMKGLTLN-CLGRKEEAYEYVRRGLRNDLK--SHV----CWHVYGLLQRSDKKYD 79 (724)
Q Consensus 9 ~~A~~~~~~~l~~p~~p~~--~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~--~~~----~~~~lg~~~~~~g~~~ 79 (724)
..|+++++.+++++.-|+. +.+.+.+|.+++ ...++++|...+++++.+... ..+ +.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4578889998863333433 356677888877 789999999999999876543 222 2456688888877777
Q ss_pred HHHHHHHHHHhhCCC---cHH-HHHHH--HHHHHHhcchHHHHHHHHHHHHhC--CCchhH----HHHHHHHHHHcCCHH
Q psy6603 80 EAIKCYRNALKWEHD---NIQ-IMRDL--SLLQIQMRDLEGYRETRYQLFMLR--PTQRAS----WIGFAMAYHLLHDFD 147 (724)
Q Consensus 80 ~A~~~~~~a~~~~p~---~~~-~~~~l--a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~----~~~la~~~~~~g~~~ 147 (724)
|....++.++.... ... ..+.+ .......+++..|.+.++.+.... +.++.+ ....+.++...+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 99999999886544 222 22222 223333479999999999888765 344432 233366667778788
Q ss_pred HHHHHHHHHHHhhc---cCCCCChhhHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Q psy6603 148 MACNILEAFRKTQQ---VTNSYDFEHSELLLYQSM--VIQDSGDLEEAVKHLDRF 197 (724)
Q Consensus 148 ~A~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~--~~~~~g~~~~A~~~~~~~ 197 (724)
++++.++++..... .+|+.......++..+-. +....|++..+...+++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888777644332 233333334445555444 445577777776665544
No 226
>KOG2610|consensus
Probab=98.20 E-value=3.4e-05 Score=69.48 Aligned_cols=151 Identities=10% Similarity=-0.008 Sum_probs=118.8
Q ss_pred ccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCch---hHHHHHHHHHhhcCCH
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN-DLKSH---VCWHVYGLLQRSDKKY 78 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~---~~~~~lg~~~~~~g~~ 78 (724)
+-.|++.+|-...+++++ .+|.+.-++-.--..++..|+...-...+++++.. +|+-| .+.-.++..+...|-|
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 457888888899999999 88888888888888888999999999999998876 66553 3344557777888999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHcCCHHHHHHHHH
Q psy6603 79 DEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT----QRASWIGFAMAYHLLHDFDMACNILE 154 (724)
Q Consensus 79 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~ 154 (724)
++|.+.-+++++++|.+..+...++.++...|++.++.++..+--..-.. ....|...+.++...+.|+.|+.+|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999999999999999999999999999999999998877654322111 11234455777888899999998887
Q ss_pred H
Q psy6603 155 A 155 (724)
Q Consensus 155 ~ 155 (724)
+
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 6
No 227
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.19 E-value=3e-06 Score=53.25 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=24.0
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHH
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 597 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 597 (724)
++..+|.+|...|++++|++.|+++++.+|+++.++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4555666666666666666666666666666666655554
No 228
>KOG1914|consensus
Probab=98.17 E-value=0.0087 Score=58.40 Aligned_cols=186 Identities=11% Similarity=0.087 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCccc-hhhhhhHHHHHHHcCCHHHHHHH
Q psy6603 371 TMKALNYINAAIDHTPT-LIELFVTKGRIYKHAG---DVLEAYKWLDEAQSLDTAD-RYINSKCAKYMLRANLIKEAEET 445 (724)
Q Consensus 371 ~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~ 445 (724)
.+++..++++++...-. +...++.++.--...- ..+.....+++++.+...+ ..++..+.+...+..-.+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 56777888887765432 4444454444333222 3667777888888774433 34555666777777778899999
Q ss_pred HHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHH-HhcCCCCCchhHH
Q psy6603 446 CSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQ-ILTNPKYAEHGET 524 (724)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~ 524 (724)
|.++-+.....-. ++... --.-|... ++.+-|.++|+- +... ++.+..
T Consensus 389 F~kaR~~~r~~hh-------VfVa~-A~mEy~cs--------------------kD~~~AfrIFeLGLkkf---~d~p~y 437 (656)
T KOG1914|consen 389 FKKAREDKRTRHH-------VFVAA-ALMEYYCS--------------------KDKETAFRIFELGLKKF---GDSPEY 437 (656)
T ss_pred HHHHhhccCCcch-------hhHHH-HHHHHHhc--------------------CChhHHHHHHHHHHHhc---CCChHH
Confidence 9999875433211 11111 01112333 445555555555 4444 445555
Q ss_pred HHhhhhHhhhcCChHHHHHHHHHhhhc--CCCc-cchHHHHHHHHhccccHHHHHHHHHHHhhhcc
Q psy6603 525 LAMKGLTLNCLGRKEEAYEYVRRGLRN--DLKS-HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 587 (724)
Q Consensus 525 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 587 (724)
-.....-+..+|+-..|..+|++++.. .|+. ...|..+-..-..-|+...+++.=++-....|
T Consensus 438 v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 438 VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 666677788899999999999999987 3332 23777777777778888888877777666555
No 229
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.16 E-value=0.00033 Score=67.49 Aligned_cols=124 Identities=12% Similarity=0.033 Sum_probs=98.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC------------------
Q psy6603 33 MKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD------------------ 94 (724)
Q Consensus 33 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~------------------ 94 (724)
.+.....+..+...-++.-++|++++|+.+.+|..++.-. .....+|..+|+++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 4455566778889999999999999999999988876532 23467777777777654210
Q ss_pred -----c--HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy6603 95 -----N--IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT--QRASWIGFAMAYHLLHDFDMACNILEAFRK 158 (724)
Q Consensus 95 -----~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 158 (724)
+ ..+...+|.|..+.|+.++|++.++.+++..|. +..++.++..++...+.|.++..++.++..
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 0 235677999999999999999999999998876 556899999999999999999999888753
No 230
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.15 E-value=0.0082 Score=57.25 Aligned_cols=131 Identities=9% Similarity=-0.144 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHH-----HH-HHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCW-----HV-YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-----~~-lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 102 (724)
-.+...|.++.+++++.+|.++|.++.+...+++... .. +-.+++ +.+.+.-.......-+..|..+....-.
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~ 85 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFK 85 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 4556678888888888888888888876554443332 11 122222 4555555555555555667777777777
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCch---------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLRPTQR---------------ASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
|....+.+.+.+|++.+....+.-.... ..-...+.++...|++.++..++++....+
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 7777788888888877654443311110 111234667777788888877777766554
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.14 E-value=6.3e-06 Score=51.77 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy6603 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 103 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 103 (724)
|..+|..+...|++++|+..|+++++.+|+++.++..+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 344444444444444444444444444444444444433
No 232
>KOG4642|consensus
Probab=98.13 E-value=1.3e-05 Score=68.40 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=90.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH
Q psy6603 68 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFD 147 (724)
Q Consensus 68 lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 147 (724)
-|..++...+|..|+.+|.+++.++|..+..+.+.+.|+++..+++.+....++++++.|+...+.+.+|........++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 47778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCC
Q psy6603 148 MACNILEAFRKTQQVTNS 165 (724)
Q Consensus 148 ~A~~~~~~~~~~~~~~p~ 165 (724)
+|+..+.++.......|-
T Consensus 96 eaI~~Lqra~sl~r~~~~ 113 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPF 113 (284)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999998777655544
No 233
>KOG2610|consensus
Probab=98.13 E-value=0.00011 Score=66.40 Aligned_cols=161 Identities=8% Similarity=-0.084 Sum_probs=106.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh-CCCcHH---HHHHHHHHHHHh
Q psy6603 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW-EHDNIQ---IMRDLSLLQIQM 109 (724)
Q Consensus 34 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~-~p~~~~---~~~~la~~~~~~ 109 (724)
.+.++...|++.+|....++.++..|.+..++..--.+++.+|+...-...+++++.. +|+-|- +.-.++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3455666777777777788888888887777766667777778877777778877766 555432 334456667777
Q ss_pred cchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHH
Q psy6603 110 RDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEE 189 (724)
Q Consensus 110 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 189 (724)
|-+++|.+.-+++++++|.+..+...++.++...|++.++.+...+-..... ........-|...+.++...+.|+.
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr---~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR---QSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh---hhhHHHhhhhHHHHHhhhcccchhH
Confidence 8888888888888888888877777888888888888888766544222221 0011112233344556666677777
Q ss_pred HHHHHHHH
Q psy6603 190 AVKHLDRF 197 (724)
Q Consensus 190 A~~~~~~~ 197 (724)
|+++|++-
T Consensus 266 aleIyD~e 273 (491)
T KOG2610|consen 266 ALEIYDRE 273 (491)
T ss_pred HHHHHHHH
Confidence 77777654
No 234
>KOG0545|consensus
Probab=98.09 E-value=0.00016 Score=62.15 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHH--HhcCCCCCch-------hHHHHhhhhHhhhcC
Q psy6603 466 MWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQ--ILTNPKYAEH-------GETLAMKGLTLNCLG 536 (724)
Q Consensus 466 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~-------~~~~~~l~~~~~~~g 536 (724)
+-...+.|+-+++.|+|.+|... |.+|+..++. +...|..|.- ...+.++..|+...|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~-------------YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~ 244 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSK-------------YREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE 244 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHH-------------HHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence 33445679999999999999986 6677777776 3344555542 236788999999999
Q ss_pred ChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHH
Q psy6603 537 RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 594 (724)
Q Consensus 537 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 594 (724)
++-++++....++..+|.+..+++..|.+....=+..+|...|.++++++|.-..+..
T Consensus 245 e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 245 EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999997665443
No 235
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.06 E-value=2.2e-06 Score=49.80 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=15.8
Q ss_pred HHHhhhcCCCccchHHHHHHHHhccccHHHHH
Q psy6603 545 VRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAI 576 (724)
Q Consensus 545 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 576 (724)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444555555555555555555555554443
No 236
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.03 E-value=4.3e-06 Score=48.57 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=29.9
Q ss_pred HHHHHhhhccccHHHHHHHHHHHHHhhhHhhHH
Q psy6603 578 CYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYR 610 (724)
Q Consensus 578 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~ 610 (724)
+|+++|+++|+++.++++||.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 489999999999999999999888888888775
No 237
>KOG0545|consensus
Probab=98.02 E-value=0.0001 Score=63.34 Aligned_cols=105 Identities=15% Similarity=0.124 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH--------cCCCch----------hHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy6603 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLR--------NDLKSH----------VCWHVYGLLQRSDKKYDEAIKCYRNAL 89 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~a~ 89 (724)
..++...|+-+++.|+|.+|...|+.++. ..|..+ ..+.++..|+...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 46788899999999999999999998873 234433 346677888899999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhH
Q psy6603 90 KWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRAS 132 (724)
Q Consensus 90 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 132 (724)
...|.|..+++..|......=+..+|...|.++++++|.-..+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999988889999999999999999875543
No 238
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.01 E-value=0.00011 Score=69.08 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=38.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy6603 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ-MRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLL 143 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 143 (724)
|..+.....+.+..+.|...|.+|.+..+....+|...|.+-.. .++.+.|..+|+.+++..|.+...|......+...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 33444444444444445555555443333334444444444333 22333344444444444444444444444444444
Q ss_pred CCHHHHHHHHHHH
Q psy6603 144 HDFDMACNILEAF 156 (724)
Q Consensus 144 g~~~~A~~~~~~~ 156 (724)
|+.+.|..+|+++
T Consensus 84 ~d~~~aR~lfer~ 96 (280)
T PF05843_consen 84 NDINNARALFERA 96 (280)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 4444444444443
No 239
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.00 E-value=0.00019 Score=67.54 Aligned_cols=132 Identities=13% Similarity=0.104 Sum_probs=91.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhh-cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS-DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 108 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 108 (724)
+|........+.+..+.|..+|.++.+..+-...+|...|.+.+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455556666666667788888888876555566777777777555 4555558888888888888887777777777778
Q ss_pred hcchHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q psy6603 109 MRDLEGYRETRYQLFMLRPTQR---ASWIGFAMAYHLLHDFDMACNILEAFRKTQQ 161 (724)
Q Consensus 109 ~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 161 (724)
.|+.+.|..+|++++..-|... ..|......-...|+.+....+.+++.+..+
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 8888888888888877666544 5677777777777888877777777766653
No 240
>KOG0376|consensus
Probab=97.94 E-value=2.4e-05 Score=74.60 Aligned_cols=111 Identities=8% Similarity=-0.003 Sum_probs=101.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 109 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 109 (724)
.+-..+...+..+.++.|+..+.++++++|+++..+...+..+.+.+++..|+..+.++++.+|....+++..|......
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34456777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy6603 110 RDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140 (724)
Q Consensus 110 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 140 (724)
+.+.+|...|++.....|+++.+...+..+-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 9999999999999999999998877665543
No 241
>KOG1585|consensus
Probab=97.90 E-value=0.0034 Score=54.38 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----Cccchhh
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTL------IELFVTKGRIYKHAGDVLEAYKWLDEAQSL-----DTADRYI 425 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~ 425 (724)
.|..-+.+|....+|++|..++.++.+-..++ ..++-..+.+...+..+.++..+++++..+ .|+....
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 55566777888899999999999998654433 334555666777778888888888888765 2222222
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHhhh
Q psy6603 426 NSKCAKYMLRANLIKEAEETCSKFTR 451 (724)
Q Consensus 426 ~~~~~~~~~~~g~~~~A~~~~~~~~~ 451 (724)
....+--.....++++|+++|++++.
T Consensus 113 aleKAak~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALA 138 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 22333334445566666666666553
No 242
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.90 E-value=0.024 Score=54.09 Aligned_cols=72 Identities=14% Similarity=0.062 Sum_probs=56.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhh
Q psy6603 377 YINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTR 451 (724)
Q Consensus 377 ~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 451 (724)
.+++++...|-.++.|+....-+...++-+.|+...+++....|. +...++.++--.++.+....+|++.++
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 467778888888999999998888999999999999888887776 555667777777777777777766654
No 243
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.86 E-value=2e-05 Score=46.27 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=17.7
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhccc
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 588 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 588 (724)
+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555566666666666666666666665554
No 244
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.84 E-value=0.005 Score=58.83 Aligned_cols=200 Identities=14% Similarity=0.024 Sum_probs=132.0
Q ss_pred hHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCchhHHHHHHHHHhh---cCCHHHHH
Q psy6603 10 NGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN----DLKSHVCWHVYGLLQRS---DKKYDEAI 82 (724)
Q Consensus 10 ~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~lg~~~~~---~g~~~~A~ 82 (724)
+++.-.++-+.+|. --++++...+-.+|....+|+.-+.+.+..-.. -++.+.+.+.+|.++.+ .|+.++|+
T Consensus 124 ~~L~~i~~rLd~~~-~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al 202 (374)
T PF13281_consen 124 KELRRIRQRLDDPE-LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKAL 202 (374)
T ss_pred HHHHHHHHhhCCHh-hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHH
Confidence 34444444444432 234567778888899999999999988887665 45566677888999988 89999999
Q ss_pred HHHHH-HHhhCCCcHHHHHHHHHHHHH---------hcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Q psy6603 83 KCYRN-ALKWEHDNIQIMRDLSLLQIQ---------MRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNI 152 (724)
Q Consensus 83 ~~~~~-a~~~~p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 152 (724)
..+.. .....+.+++.+..+|.+|-. ....++|+..|.++.+.+|+. -.-.+++.++...|...+...-
T Consensus 203 ~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~e 281 (374)
T PF13281_consen 203 QILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEE 281 (374)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHH
Confidence 99999 445567788999999988752 234789999999999999654 3345566666666653333221
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6603 153 LEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLI 232 (724)
Q Consensus 153 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 232 (724)
+.+. ...+...+.+.|. ...-.+.+..-.++.+..-.|++++|++.+++++
T Consensus 282 l~~i-----------------~~~l~~llg~kg~------------~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 282 LRKI-----------------GVKLSSLLGRKGS------------LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred HHHH-----------------HHHHHHHHHhhcc------------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 1111 1111222222222 1122345556667777777888888888888888
Q ss_pred HHcCCcHH
Q psy6603 233 ERNQENTL 240 (724)
Q Consensus 233 ~~~p~~~~ 240 (724)
...|....
T Consensus 333 ~l~~~~W~ 340 (374)
T PF13281_consen 333 KLKPPAWE 340 (374)
T ss_pred hcCCcchh
Confidence 87776554
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0043 Score=55.91 Aligned_cols=133 Identities=12% Similarity=0.007 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ-IMRDLSLL 105 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~la~~ 105 (724)
..+.-+..+.-....|++.+|...|..++...|++..+...++.++...|+.+.|...+...-....+... .+......
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 34566777888999999999999999999999999999999999999999999999888764322222111 11112233
Q ss_pred HHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 106 QIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 106 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
+.+.....+.. .+.+.+..+|++..+.+.++..+...|+.++|.+.+-.+++..
T Consensus 213 l~qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 213 LEQAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33444433322 3446778899999999999999999999999998766655543
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.80 E-value=0.0031 Score=61.06 Aligned_cols=188 Identities=12% Similarity=0.062 Sum_probs=120.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy6603 67 VYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDF 146 (724)
Q Consensus 67 ~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 146 (724)
.+..-..+..+...-++.-.+|++++|+.++++..|+.= ......+|..+++++++..... +.........|..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHF 246 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccch
Confidence 334444556788888888888999999888888877752 2334677777787777654221 1111111111221
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc--HhhHHHHHHHHHHHcCChHHH
Q psy6603 147 DMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHD--KLTVEETYGALKLKLGQYNEA 224 (724)
Q Consensus 147 ~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A 224 (724)
-+.. ..... .....+...+|.+..+.|+.++|++.++.+++..|. +..++.++..++..++.+.++
T Consensus 247 ~e~~-------~~Rdt-----~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 247 WEAW-------HRRDT-----NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred hhhh-------hcccc-----chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 1111 00001 113445567899999999999999999999988775 466999999999999999999
Q ss_pred HHHHHHHHHH-cCCcHHHHHHHHHH-hc-cCC---------------hHHHHHHHHHHHHhCCCCC
Q psy6603 225 MKHYESLIER-NQENTLYYNKLVEA-KQ-LTN---------------NDDIFQLLTHYISKYPKAT 272 (724)
Q Consensus 225 ~~~~~~~~~~-~p~~~~~~~~l~~~-~~-~~~---------------~~~a~~~~~~~~~~~~~~~ 272 (724)
...+.+--+. -|+.....+..+.+ .+ .++ -..|++.+.++++.+|-.+
T Consensus 315 q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 315 QALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 9998886433 25555544443333 11 111 1245677888888888764
No 247
>KOG1550|consensus
Probab=97.80 E-value=0.022 Score=59.53 Aligned_cols=175 Identities=18% Similarity=0.123 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHhhc-----CCHHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHhc---
Q psy6603 44 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD-----KKYDEAIKCYRNALKW-----EHDNIQIMRDLSLLQIQMR--- 110 (724)
Q Consensus 44 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~a~~~-----~p~~~~~~~~la~~~~~~~--- 110 (724)
..+|..+++.+.+. .+..+.+.+|.++..- .+.+.|+.+|+.+... .-..+.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888877653 4566777778777653 5788999999888761 1124556777777777643
Q ss_pred --chHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC---CHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH--
Q psy6603 111 --DLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLH---DFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD-- 183 (724)
Q Consensus 111 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-- 183 (724)
+...|...|.++.+.. ++.+.+.+|.++..-. +...|..+|..+.+.. +..+.+.++.+|..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---------~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---------HILAIYRLALCYELGL 374 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHhCC
Confidence 5566777777776654 3455666666666544 4567777777666554 55666677766654
Q ss_pred --cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q psy6603 184 --SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKL-GQYNEAMKHYESLIE 233 (724)
Q Consensus 184 --~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~ 233 (724)
.-+...|..++.++.+.. .+.+...++..+.-. ++++.+...+.....
T Consensus 375 gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 246677777777776665 333333343333222 555555555444433
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.79 E-value=0.0034 Score=63.76 Aligned_cols=155 Identities=16% Similarity=0.065 Sum_probs=114.7
Q ss_pred ccchhhHHHHHHHhhCCCCCCChHH-HHHHHHHH-----H--h--ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhh
Q psy6603 5 HKQYKNGLKFAKQILTNPKYAEHGE-TLAMKGLT-----L--N--CLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS 74 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~~p~~p~~~~-~~~~~a~~-----~--~--~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 74 (724)
.||=+.+++.+.+..+.+ +-..+- .+..++.- . . .....+.|.+++.......|+.....+..|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 367778888888877732 222221 22222211 1 1 34567889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHcCCH---
Q psy6603 75 DKKYDEAIKCYRNALKWEHDNI----QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQR-ASWIGFAMAYHLLHDF--- 146 (724)
Q Consensus 75 ~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~--- 146 (724)
.|+.++|+..|++++.....-+ -.++.++.++..+++|++|...|.+..+.+.-.. ...+..|.++...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhh
Confidence 9999999999999885433322 3678899999999999999999999998766543 3455668889999998
Q ss_pred ----HHHHHHHHHHHHhh
Q psy6603 147 ----DMACNILEAFRKTQ 160 (724)
Q Consensus 147 ----~~A~~~~~~~~~~~ 160 (724)
++|..++.++....
T Consensus 360 ~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 360 KEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 67776666654443
No 249
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.79 E-value=4.7e-05 Score=44.68 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q psy6603 64 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 94 (724)
Q Consensus 64 ~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~ 94 (724)
+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.78 E-value=3.4e-05 Score=45.37 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=18.2
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhcccc
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN 589 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 589 (724)
+|+.+|.++...|++++|+++|+++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666666666666666666666665543
No 251
>KOG0530|consensus
Probab=97.76 E-value=0.019 Score=50.52 Aligned_cols=187 Identities=11% Similarity=0.120 Sum_probs=142.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhc-CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchH-HHH
Q psy6603 39 NCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD-KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE-GYR 116 (724)
Q Consensus 39 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~-~A~ 116 (724)
.+...-..|+.+-..++.++|.+..+|...-.++..+ .+..+-+.++..+++-+|.|.++|...-.+....|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 3445667889999999999999999998887777664 46788889999999999999999999998888899888 778
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH-cC-----CHHHH
Q psy6603 117 ETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD-SG-----DLEEA 190 (724)
Q Consensus 117 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~g-----~~~~A 190 (724)
++.+.++..+..+-.+|...-.+...-+.++.-+.....+++....+.+ +|..+-.+... .| ..+.-
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS-------AWN~Ryfvi~~~~~~~~~~~le~E 206 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS-------AWNQRYFVITNTKGVISKAELERE 206 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc-------hhheeeEEEEeccCCccHHHHHHH
Confidence 8899999999999999999999999999999999888887776643332 33322111111 11 23455
Q ss_pred HHHHHHHhhhhccHhhHHHHHHHHHHH-cC--ChHHHHHHHHHHH
Q psy6603 191 VKHLDRFKEQIHDKLTVEETYGALKLK-LG--QYNEAMKHYESLI 232 (724)
Q Consensus 191 ~~~~~~~~~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~~~ 232 (724)
+.+..+.+...|++.++|..+.-++.. .| .+..-.......+
T Consensus 207 l~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 207 LNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 667778888999999999999888886 44 2344444444444
No 252
>KOG4507|consensus
Probab=97.75 E-value=0.0084 Score=58.95 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHH
Q psy6603 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYML 434 (724)
Q Consensus 358 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 434 (724)
...||.+..+.|...+|-.++.+++.+....|-.++.+|+.+....+.+.|++.|+.+++++|+++.+...+-.+-+
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 34889999999999999999999999998888899999999999999999999999999999999887766555444
No 253
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.72 E-value=0.025 Score=56.23 Aligned_cols=170 Identities=16% Similarity=0.166 Sum_probs=100.0
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc----chhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCcc-CC-
Q psy6603 386 PTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA----DRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAM-EN- 459 (724)
Q Consensus 386 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~- 459 (724)
......|...+.+..+.|+++.|...+.++...++. .+.+....++.+...|+..+|+..++..+....... ..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 345667777777777888888887777777765421 355566667777778888888877777665211110 00
Q ss_pred hhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhc----
Q psy6603 460 LNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCL---- 535 (724)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 535 (724)
...... .+..+ ..+.... .-.........+.++..+|......
T Consensus 223 ~~~~~~------~~~~~----~~~~~~~-----------------------~~~~~~~~~~~a~~~l~~a~w~~~~~~~~ 269 (352)
T PF02259_consen 223 SNAELK------SGLLE----SLEVISS-----------------------TNLDKESKELKAKAFLLLAKWLDELYSKL 269 (352)
T ss_pred cHHHHh------hcccc----ccccccc-----------------------cchhhhhHHHHHHHHHHHHHHHHhhcccc
Confidence 000000 00000 0000000 0000000112234666777766666
Q ss_pred --CChHHHHHHHHHhhhcCCCccchHHHHHHHHhccc-----------------cHHHHHHHHHHHhhhccc
Q psy6603 536 --GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK-----------------KYDEAIKCYRNALKWEHD 588 (724)
Q Consensus 536 --g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----------------~~~~A~~~~~~al~~~p~ 588 (724)
+..+++...|+++++.+|+...+|+.+|..+...= -...|+..|-+++..+|+
T Consensus 270 ~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 270 SSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 88899999999999999999999998887665431 123477777777777776
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.72 E-value=8e-05 Score=43.76 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q psy6603 64 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 94 (724)
Q Consensus 64 ~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~ 94 (724)
+|+.+|.++...|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555555544
No 255
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.65 E-value=0.0064 Score=58.52 Aligned_cols=164 Identities=14% Similarity=0.082 Sum_probs=108.4
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHhhcC------------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHH
Q psy6603 49 EYVRRGLRNDLKSHVCWHVYGLLQRSDK------------KYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYR 116 (724)
Q Consensus 49 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~ 116 (724)
.-|++.++.+|.+..+|..+....-..- -.+.-+..+++|++.+|++...+..+..+..+..+.+...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3466667777777777776654443321 1456678899999999999998888888888888888889
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHH---cCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q psy6603 117 ETRYQLFMLRPTQRASWIGFAMAYHL---LHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKH 193 (724)
Q Consensus 117 ~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 193 (724)
+-+++++..+|+++..|..+...... .-.++.....|.++++.+...... .........
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~-----------------~~~~~~~~~- 147 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSG-----------------RMTSHPDLP- 147 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhcc-----------------ccccccchh-
Confidence 99999999999999888877554443 335667777776666554221110 000000000
Q ss_pred HHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q psy6603 194 LDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERN 235 (724)
Q Consensus 194 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 235 (724)
.....-..+...+...+...|..+.|+..++..++.+
T Consensus 148 -----~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 148 -----ELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred -----hHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 0111123456667777788888888888888888875
No 256
>KOG2396|consensus
Probab=97.65 E-value=0.07 Score=51.97 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHH
Q psy6603 46 EAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD-LEGYRETRYQLFM 124 (724)
Q Consensus 46 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~ 124 (724)
.-..+|++++...+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.+.++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345678888888888999999998888888889999999999999999999999998887777766 8999999999999
Q ss_pred hCCCchhHHHHHHH
Q psy6603 125 LRPTQRASWIGFAM 138 (724)
Q Consensus 125 ~~p~~~~~~~~la~ 138 (724)
.+|+++..|...-+
T Consensus 169 ~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFR 182 (568)
T ss_pred cCCCChHHHHHHHH
Confidence 99999988776544
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.63 E-value=0.062 Score=50.73 Aligned_cols=168 Identities=11% Similarity=-0.001 Sum_probs=102.5
Q ss_pred hhcCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC-CHHHHH
Q psy6603 73 RSDKKYDEAIKCYRNALKWE-HDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLH-DFDMAC 150 (724)
Q Consensus 73 ~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~ 150 (724)
..+|+++.|..++.++-... ..++.....++. ..++.|......+ ++++|.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~---------------------------~~yn~G~~l~~~~~~~~~a~ 56 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELAR---------------------------VCYNIGKSLLSKKDKYEEAV 56 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHH---------------------------HHHHHHHHHHHcCCChHHHH
Confidence 35677777777777776544 333333333333 3345555556666 777777
Q ss_pred HHHHHHHHhhcc-------CCCCChhhHHHHHHHHHHHHHcCCHH---HHHHHHHHHhhhhccHhhHHHHHHHHHHHcCC
Q psy6603 151 NILEAFRKTQQV-------TNSYDFEHSELLLYQSMVIQDSGDLE---EAVKHLDRFKEQIHDKLTVEETYGALKLKLGQ 220 (724)
Q Consensus 151 ~~~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~g~~~---~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 220 (724)
.+++++.+..+. .|+.......++..++.++...+.++ +|...++.+-...|+.+..+...-.++.+.++
T Consensus 57 ~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~ 136 (278)
T PF08631_consen 57 KWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFD 136 (278)
T ss_pred HHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCC
Confidence 776666665322 22222345567778888998877654 45566666666678888887777777777899
Q ss_pred hHHHHHHHHHHHHHcC-CcHHHHHHHHHH--hccCChHHHHHHHHHHHHh
Q psy6603 221 YNEAMKHYESLIERNQ-ENTLYYNKLVEA--KQLTNNDDIFQLLTHYISK 267 (724)
Q Consensus 221 ~~~A~~~~~~~~~~~p-~~~~~~~~l~~~--~~~~~~~~a~~~~~~~~~~ 267 (724)
.+++.+.+.+++..-+ .....-..+..+ +.......+...+..++..
T Consensus 137 ~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 137 EEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred hhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 9999999999988754 222222222222 2334455666666665544
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0016 Score=58.54 Aligned_cols=145 Identities=13% Similarity=0.010 Sum_probs=103.6
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHH-HHHHHHHhhcCCHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCW-HVYGLLQRSDKKYDE 80 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-~~lg~~~~~~g~~~~ 80 (724)
..+.|++.+|...|..++. ..|.+.++...++.++...|+.+.|..++...-....+....- ......+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3567999999999999999 7778899999999999999999999999887533222211111 111122222222222
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHcCCHHHH
Q psy6603 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT--QRASWIGFAMAYHLLHDFDMA 149 (724)
Q Consensus 81 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A 149 (724)
. ..+++.+..+|++..+.+.+|..+...|+.+.|.+.+-.+++.+-. +..+...+..++...|.-+.+
T Consensus 222 ~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 222 I-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred H-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 2 2345556779999999999999999999999999999888887654 455666666666655544433
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.61 E-value=0.09 Score=52.22 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc
Q psy6603 357 VYHYLAQHYDHL------GDTMKALNYINAAIDHTPTLIELFVTKGRIYKHA 402 (724)
Q Consensus 357 ~~~~la~~~~~~------~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~ 402 (724)
++..+|...... +..++++..|.++++.+|+...+|+..|..+...
T Consensus 254 ~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 254 AFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 455666666666 8999999999999999999999999998877543
No 260
>KOG0376|consensus
Probab=97.60 E-value=8.5e-05 Score=71.03 Aligned_cols=104 Identities=9% Similarity=0.030 Sum_probs=97.4
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
++..++|+.|+..|.+++. .+|+.+..+...+..+.+.+++..|+.-+.++++.+|....+|+..|.+....+++.+|
T Consensus 14 ~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 4567899999999999999 88899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQI 107 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~ 107 (724)
...|++...+.|+++.+...+..|-.
T Consensus 92 ~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 92 LLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 99999999999999999888877753
No 261
>KOG2396|consensus
Probab=97.60 E-value=0.082 Score=51.50 Aligned_cols=89 Identities=7% Similarity=-0.002 Sum_probs=75.7
Q ss_pred HHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCC-HHHHHHHHHHHH
Q psy6603 11 GLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKK-YDEAIKCYRNAL 89 (724)
Q Consensus 11 A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~a~ 89 (724)
-..+|+.++. +++.|+..|.....-..+.+.+.+--.+|.+++..+|+++..|..-+.-.+..+. .+.|...|.+++
T Consensus 90 Iv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3456788888 7888888888877777777779999999999999999999999998887777665 999999999999
Q ss_pred hhCCCcHHHHHH
Q psy6603 90 KWEHDNIQIMRD 101 (724)
Q Consensus 90 ~~~p~~~~~~~~ 101 (724)
+.+|+++..|..
T Consensus 168 R~npdsp~Lw~e 179 (568)
T KOG2396|consen 168 RFNPDSPKLWKE 179 (568)
T ss_pred hcCCCChHHHHH
Confidence 999999887654
No 262
>KOG1550|consensus
Probab=97.56 E-value=0.012 Score=61.56 Aligned_cols=253 Identities=13% Similarity=0.008 Sum_probs=169.7
Q ss_pred ccchhhHHHHHHHhhCC---CCCCChHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcC
Q psy6603 5 HKQYKNGLKFAKQILTN---PKYAEHGETLAMKGLTLNCLG-----RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK 76 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~~---p~~p~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 76 (724)
.++.+.|+.+++.+... ...-..+.+.+.+|.+|.+.. +...|+.++.++-.. .++.+.+.+|.++..-.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGT 339 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCC
Confidence 35788888888887540 001113347788899988854 678899999998775 45677888898888654
Q ss_pred ---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc-CCHHH
Q psy6603 77 ---KYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ----MRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLL-HDFDM 148 (724)
Q Consensus 77 ---~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~ 148 (724)
++..|..+|..|.. -.+..+.+.++.|+.. ..+...|..++.++.+.+ .+.+...++..+..- +++..
T Consensus 340 ~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~ 415 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDT 415 (552)
T ss_pred ccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccH
Confidence 57899999999876 4678899999998863 357889999999999988 344444444444332 77777
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHc----CC
Q psy6603 149 ACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD----SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKL----GQ 220 (724)
Q Consensus 149 A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----g~ 220 (724)
+...+..........+. .....+......... ..+...+...+.++. ...+..+...+|.+|..- .+
T Consensus 416 ~~~~~~~~a~~g~~~~q---~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~~~a~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 416 ALALYLYLAELGYEVAQ---SNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAA--AQGNADAILKLGDYYYYGLGTGRD 490 (552)
T ss_pred HHHHHHHHHHhhhhHHh---hHHHHHHHhccccccccccccchhHHHHHHHHHH--hccCHHHHhhhcceeeecCCCCCC
Confidence 77665554443322221 111111111111111 124555666666654 345677888888888765 35
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHhccC----ChHHHHHHHHHHHHhCCCC
Q psy6603 221 YNEAMKHYESLIERNQENTLYYNKLVEAKQLT----NNDDIFQLLTHYISKYPKA 271 (724)
Q Consensus 221 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----~~~~a~~~~~~~~~~~~~~ 271 (724)
++.|...|..+.... ....+.++.+++.| ....|..++.++.......
T Consensus 491 ~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 491 PEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred hHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 899999999998876 77888888886532 2688888888887766654
No 263
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.51 E-value=0.1 Score=50.36 Aligned_cols=127 Identities=9% Similarity=0.060 Sum_probs=100.4
Q ss_pred HHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCC
Q psy6603 107 IQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD 186 (724)
Q Consensus 107 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 186 (724)
...|+.-.|-.-...++...|.+|......+.+....|.|+.+...+..+.+.+.... .+...+-......|+
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~-------~~~~~~~r~~~~l~r 372 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD-------STLRCRLRSLHGLAR 372 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc-------hHHHHHHHhhhchhh
Confidence 3568888888888899999999999888889999999999999988887777664332 233344556777899
Q ss_pred HHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHH
Q psy6603 187 LEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTL 240 (724)
Q Consensus 187 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 240 (724)
+++|...-.-++...-+++++...-+-....+|-++++...+++++.++|....
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 999999888888777777777666666777888899999999999998876544
No 264
>KOG0551|consensus
Probab=97.49 E-value=0.00069 Score=61.39 Aligned_cols=111 Identities=11% Similarity=0.132 Sum_probs=89.8
Q ss_pred hcchhhhhhhhhhhhhHhhhhhchHHHHHHHHH-HhcCCCCCc-hhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCcc
Q psy6603 479 LGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQ-ILTNPKYAE-HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH 556 (724)
Q Consensus 479 ~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 556 (724)
.|..++-...|.+-++.++..++|+.|+..|.. +.....+|+ ++..|.+.+-+....|++..|+....+++..+|++.
T Consensus 74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 444555555566666677777888888888855 777656665 667889999999999999999999999999999999
Q ss_pred chHHHHHHHHhccccHHHHHHHHHHHhhhcccc
Q psy6603 557 VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN 589 (724)
Q Consensus 557 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 589 (724)
.+++.-+.++..+.++.+|..+.+..+.++-+.
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999999999999999988887765443
No 265
>KOG0551|consensus
Probab=97.49 E-value=0.0034 Score=57.12 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=80.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc----HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy6603 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDN----IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 140 (724)
+-.-|+-|++.++|..|+.+|.+.+...-.+ ...|.+.+.+....|++..|+....+++..+|.+..+++.-+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 4445889999999999999999999875443 446788999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHH
Q psy6603 141 HLLHDFDMACNILEAFRK 158 (724)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~ 158 (724)
+.+.++.+|..+.+....
T Consensus 164 ~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999888776543
No 266
>KOG0890|consensus
Probab=97.46 E-value=0.42 Score=56.24 Aligned_cols=322 Identities=15% Similarity=0.081 Sum_probs=171.3
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHH
Q psy6603 101 DLSLLQIQMRDLEGYRETRYQLFMLRPT----QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLY 176 (724)
Q Consensus 101 ~la~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~ 176 (724)
.++.+-.+.+.+..|+.++++- ...+. ....+..+-.+|...++++.-..+... ....| .+..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~----r~a~~--------sl~~ 1454 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR----RFADP--------SLYQ 1454 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH----hhcCc--------cHHH
Confidence 5777788888888888888774 11111 112333444478888888876554332 11112 2333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH--hccCCh
Q psy6603 177 QSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA--KQLTNN 254 (724)
Q Consensus 177 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~ 254 (724)
........|++..|..+|++++..+|+....+...-......|.+...+...+-.....++..+-+..++.- -+.+++
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence 444667789999999999999999998887777777788888888888887776666656555555554443 233454
Q ss_pred HHHHHHHHHHHHhCCCCCccc---cccccccCchhHH--HHHHHH----HHhhhhcCCchhhhhhHHhhhchhhHHHHHH
Q psy6603 255 DDIFQLLTHYISKYPKATVPK---RLSLNYVSGDQFR--TEIDKY----LRHGFHKGVPPLFVNLRSLYSNTEKCKIIQD 325 (724)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 325 (724)
+....... .......... .+.+.....+.+. +.+... +.....-+... .+...|.-.-+ -.
T Consensus 1535 D~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~---Sy~~~Y~~~~k----LH 1604 (2382)
T KOG0890|consen 1535 DLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEG---SYVRSYEILMK----LH 1604 (2382)
T ss_pred hhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccc---hHHHHHHHHHH----HH
Confidence 44443322 0000000000 0000000000000 011000 00000000000 00000000000 01
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHH---hcCC----ChHHHHHHHHH
Q psy6603 326 LVESYVEALSKTGHFSLQDEGEVEPASALLWVYH-YLAQHYDHLGDTMKALNYINAAI---DHTP----TLIELFVTKGR 397 (724)
Q Consensus 326 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~la~~~~~~~~~~~A~~~~~~~l---~~~p----~~~~~~~~l~~ 397 (724)
.+-...........++..+.... ....|.+. ....-+. +..+-+-.+++++ ..+| ...+.|...|+
T Consensus 1605 ~l~el~~~~~~l~~~s~~~~s~~---~sd~W~~Rl~~tq~s~---~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAr 1678 (2382)
T KOG0890|consen 1605 LLLELENSIEELKKVSYDEDSAN---NSDNWKNRLERTQPSF---RIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSAR 1678 (2382)
T ss_pred HHHHHHHHHHHhhccCccccccc---cchhHHHHHHHhchhH---HHHhHHHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 11112222222222222111111 12333321 1111122 2333344444442 2233 46789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcc
Q psy6603 398 IYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREG 453 (724)
Q Consensus 398 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 453 (724)
+....|.++.|...+-+|.+..+ +.+....|+.+...|+...|+..+++.+...
T Consensus 1679 iaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1679 IARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 99999999999999999988773 5677788999999999999999999999643
No 267
>KOG1258|consensus
Probab=97.43 E-value=0.17 Score=50.86 Aligned_cols=96 Identities=13% Similarity=0.012 Sum_probs=65.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHH---HHHHHHccCccc---hhhhhhHHHH-H
Q psy6603 361 LAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYK---WLDEAQSLDTAD---RYINSKCAKY-M 433 (724)
Q Consensus 361 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~---~~~~a~~~~~~~---~~~~~~~~~~-~ 433 (724)
-+..-...|++..|...+++..+..|+...+-........+.|+.+.+.. .+.....-..+. ...+...+.. +
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 34445567899999999999998889988888888888899999988883 333333221111 1222233333 3
Q ss_pred HHcCCHHHHHHHHHHhhhcccCc
Q psy6603 434 LRANLIKEAEETCSKFTREGVSA 456 (724)
Q Consensus 434 ~~~g~~~~A~~~~~~~~~~~~~~ 456 (724)
.-.++.+.|...+..+....|..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDC 474 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCcc
Confidence 34567888988888888766554
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.017 Score=48.68 Aligned_cols=103 Identities=22% Similarity=0.166 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHH
Q psy6603 132 SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY 211 (724)
Q Consensus 132 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 211 (724)
+...++..+...|++++|+..++..+... .+.....-+-.+++.+....|.+++|+..++...... -.+......
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elr 165 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT----KDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHh
Confidence 44556777888888888887776644322 1122345566778888888888888888887643211 123345677
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHcCCcH
Q psy6603 212 GALKLKLGQYNEAMKHYESLIERNQENT 239 (724)
Q Consensus 212 a~~~~~~g~~~~A~~~~~~~~~~~p~~~ 239 (724)
|+++...|+-++|+..|++++...++.+
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 8888888999999998888888865443
No 269
>KOG2041|consensus
Probab=97.40 E-value=0.19 Score=51.11 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=26.9
Q ss_pred HhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHh
Q psy6603 495 KCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRG 548 (724)
Q Consensus 495 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 548 (724)
.|.+..++.+|.++.+.... |.........+.-+...++..+|++..+++
T Consensus 887 tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 34445566666665544322 333333444445555667777777776665
No 270
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.38 E-value=0.0068 Score=50.87 Aligned_cols=116 Identities=15% Similarity=0.094 Sum_probs=77.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHH-HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYD-EAIKCYRNALKWEHDNIQIMRDLSLLQIQMR 110 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 110 (724)
...|......|+.+.++..+++++.+.......-.. ...|- .....++.. ...+...++..+...|
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~ 76 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEAG 76 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhcc
Confidence 344555666778888888888888764332211000 01111 111222221 2346677888889999
Q ss_pred chHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 111 DLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 111 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
++++|+..+++++..+|.+..++..+..++...|+..+|+..|+++.+.+
T Consensus 77 ~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 77 DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876655
No 271
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.36 E-value=0.09 Score=50.55 Aligned_cols=102 Identities=9% Similarity=0.141 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh----hccHhhHHHHHHHHHHH---cCChHHHHHHHHHHH-HHcCCcHHH
Q psy6603 170 HSELLLYQSMVIQDSGDLEEAVKHLDRFKEQ----IHDKLTVEETYGALKLK---LGQYNEAMKHYESLI-ERNQENTLY 241 (724)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~-~~~p~~~~~ 241 (724)
.+++...+-..|....+|+.-+++.+.+-.. .++.+.+...+|.++-+ .|+.++|+..+..++ ...+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4455566666899999999999999887766 45567788899999999 999999999999954 456778888
Q ss_pred HHHHHHHhc----------cCChHHHHHHHHHHHHhCCCC
Q psy6603 242 YNKLVEAKQ----------LTNNDDIFQLLTHYISKYPKA 271 (724)
Q Consensus 242 ~~~l~~~~~----------~~~~~~a~~~~~~~~~~~~~~ 271 (724)
+..+|.+++ ....++|+..|.++....|+.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 888888753 124678888888888877654
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.022 Score=47.92 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=83.9
Q ss_pred HHHHHHhhCCCcHH---HHHHHHHHHHHhcchHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6603 84 CYRNALKWEHDNIQ---IMRDLSLLQIQMRDLEGYRETRYQLFMLRPT---QRASWIGFAMAYHLLHDFDMACNILEAFR 157 (724)
Q Consensus 84 ~~~~a~~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 157 (724)
...+....+|.+.- +...++..+...|++++|+..++.++....+ -..+-.+++++....|.+++|+..++...
T Consensus 74 ~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 74 AAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 33344444444432 4566788889999999999999988865444 23466788999999999999998876633
Q ss_pred HhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH
Q psy6603 158 KTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK 204 (724)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 204 (724)
.. ...+.....+|+++...|+-++|+..|++++...++.
T Consensus 154 ~~--------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 154 EE--------SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cc--------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 21 1344556678999999999999999999999987544
No 273
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.34 E-value=0.0065 Score=50.98 Aligned_cols=62 Identities=11% Similarity=-0.031 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q psy6603 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLF 123 (724)
Q Consensus 62 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 123 (724)
..+...++..+...|++++|+..+++++..+|.+..++..+..++...|+...|+..|++..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999887664
No 274
>KOG0530|consensus
Probab=97.33 E-value=0.031 Score=49.30 Aligned_cols=200 Identities=11% Similarity=0.068 Sum_probs=133.2
Q ss_pred hHHHHHHHhhCCCCCCChHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHH-HHHHHHHH
Q psy6603 10 NGLKFAKQILTNPKYAEHGETLAMKGLTLNCLG-RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYD-EAIKCYRN 87 (724)
Q Consensus 10 ~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~ 87 (724)
.|+.+-+.++. .+|.+.-+|...-.++..++ +..+-++++.+++..+|++..+|+..-.+....|++. .-+...+.
T Consensus 61 RAl~LT~d~i~--lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 61 RALQLTEDAIR--LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred HHHHHHHHHHH--hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 34444444444 34455555555444544443 5677889999999999999999999999998899888 88899999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH-HH--HHHHHHHHhhccCC
Q psy6603 88 ALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDM-AC--NILEAFRKTQQVTN 164 (724)
Q Consensus 88 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~-A~--~~~~~~~~~~~~~p 164 (724)
++..+..+..+|...-.+....+.++.-+.+..++++.+-.+-.+|...-.+......... +. .-+.-..+.+...|
T Consensus 139 ~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP 218 (318)
T KOG0530|consen 139 MLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVP 218 (318)
T ss_pred HHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999998888888765433333222211 11 11122333444445
Q ss_pred CCChhhHHHHHHHHHHHHH-cC--CHHHHHHHHHHHh-hhhccHhhHHHHHHHHH
Q psy6603 165 SYDFEHSELLLYQSMVIQD-SG--DLEEAVKHLDRFK-EQIHDKLTVEETYGALK 215 (724)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~-~g--~~~~A~~~~~~~~-~~~p~~~~~~~~la~~~ 215 (724)
+ +..+|.++.-++.. .| .+.+......... ......+..+-.+..+|
T Consensus 219 ~----NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 219 N----NESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred C----CccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 5 56688888777775 44 2334444444443 22223344444455554
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.31 E-value=0.00035 Score=40.91 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=17.7
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhcc
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKWEH 587 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 587 (724)
+|+.+|.++..+|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455556666666666666666666665555
No 276
>KOG2041|consensus
Probab=97.27 E-value=0.28 Score=49.96 Aligned_cols=216 Identities=11% Similarity=0.063 Sum_probs=120.8
Q ss_pred HHHHhhCCCCCCChHHHHHHHHHH------HhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHH
Q psy6603 14 FAKQILTNPKYAEHGETLAMKGLT------LNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRN 87 (724)
Q Consensus 14 ~~~~~l~~p~~p~~~~~~~~~a~~------~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 87 (724)
.+++++..|.+|+..-....+... +...-..++|+++ ++.+|. +..|..++......-.++.|...|-+
T Consensus 643 lld~Il~~pE~pnk~~ii~~~ikslrD~~~Lve~vgledA~qf----iEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVr 717 (1189)
T KOG2041|consen 643 LLDKILLTPENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQF----IEDNPH-PRLWRLLAEYALFKLALDTAEHAFVR 717 (1189)
T ss_pred EHhhHhcCcCCCCcceEEEEEehhhhhHHHHHHHhchHHHHHH----HhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 356777777777643221111111 1112223444443 344554 78899999888888888888888876
Q ss_pred HHhhCCCcHHHH----------HHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6603 88 ALKWEHDNIQIM----------RDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFR 157 (724)
Q Consensus 88 a~~~~p~~~~~~----------~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 157 (724)
.-.. |.- ... ...+.+-.--|++++|.+.|-.+-+.+ .-...+.+.|+|-...+++..
T Consensus 718 c~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~-- 785 (1189)
T KOG2041|consen 718 CGDY-AGI-KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRN-- 785 (1189)
T ss_pred hccc-cch-hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHc--
Confidence 5331 211 111 223344444577888887774432221 123445566777666544322
Q ss_pred HhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q psy6603 158 KTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQE 237 (724)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 237 (724)
...+ ..+.....++..+|..+.....+++|.++|...-. ....+.++....++++-. .+...-|+
T Consensus 786 --g~~d-~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE----~la~~Lpe 850 (1189)
T KOG2041|consen 786 --GGSD-DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELE----VLARTLPE 850 (1189)
T ss_pred --cCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHH----HHHHhcCc
Confidence 1111 12334566778888888888888888888876432 234566666666665533 33444566
Q ss_pred cHHHHHHHHHHh-ccCChHHHHHHH
Q psy6603 238 NTLYYNKLVEAK-QLTNNDDIFQLL 261 (724)
Q Consensus 238 ~~~~~~~l~~~~-~~~~~~~a~~~~ 261 (724)
+....-.++..+ ..|.-++|++.|
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHH
Confidence 666666666663 446666666554
No 277
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.24 E-value=0.022 Score=55.46 Aligned_cols=145 Identities=15% Similarity=0.083 Sum_probs=110.3
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc--------------CCC------------ccc---hHHHHHHHHh
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN--------------DLK------------SHV---CWHVYGLLQR 567 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------~p~------------~~~---~~~~l~~~~~ 567 (724)
.+|-+.+++..++.++..+|+.+.|.+..++|+-. ++. |-. +.+.....+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999988721 111 222 6667778889
Q ss_pred ccccHHHHHHHHHHHhhhccc-cHH-HHHHHHHHHHHhhhHhhHHHHHHHHHhhhh-h---hhhhhhhhHHHHHHHhCCh
Q psy6603 568 SDKKYDEAIKCYRNALKWEHD-NIQ-IMRDLSLLQIQMRDLEGYREGVSAMENLNE-M---QCMWFQTECALAYQRLGRW 641 (724)
Q Consensus 568 ~~~~~~~A~~~~~~al~~~p~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~---~~~~~~~~la~~~~~~g~~ 641 (724)
+.|-+..|.++.+-.+.++|. ||- ++..+-...++.++++-.++..+....... . .-.-+.+.+|.++...++-
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 999999999999999999998 774 455555555677888877777776554211 1 1112336778888889888
Q ss_pred ---------------hHHHHHHHHHHHHHhhhhcc
Q psy6603 642 ---------------GDTLKKCHEVDRHFSEIIED 661 (724)
Q Consensus 642 ---------------~~A~~~~~~~~~~~~~~~~~ 661 (724)
++|.+.+.+++..||.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~ 229 (360)
T PF04910_consen 195 ESSQSSAQSGRSENSESADEALQKAILRFPWVLVP 229 (360)
T ss_pred cccccccccccccchhHHHHHHHHHHHHhHHHHHH
Confidence 89999999999998866544
No 278
>KOG1308|consensus
Probab=97.20 E-value=0.00019 Score=65.36 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=63.0
Q ss_pred HHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHH
Q psy6603 71 LQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMAC 150 (724)
Q Consensus 71 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 150 (724)
-.+..|.+++|+..|..++.++|.....+...+.+++.+++...|+..+..+++++|+....+-..+.+...+|+|.+|.
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 33456667777777777777777777777777777777777777777777777777777766666677777777777777
Q ss_pred HHHHHHHHhh
Q psy6603 151 NILEAFRKTQ 160 (724)
Q Consensus 151 ~~~~~~~~~~ 160 (724)
..+..+.+..
T Consensus 203 ~dl~~a~kld 212 (377)
T KOG1308|consen 203 HDLALACKLD 212 (377)
T ss_pred HHHHHHHhcc
Confidence 7666655443
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.18 E-value=0.00047 Score=40.35 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=30.2
Q ss_pred HHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCc
Q psy6603 523 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555 (724)
Q Consensus 523 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 555 (724)
.+|+.+|.++..+|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 479999999999999999999999999999853
No 280
>KOG1308|consensus
Probab=97.12 E-value=0.00023 Score=64.72 Aligned_cols=97 Identities=11% Similarity=-0.019 Sum_probs=87.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 111 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 111 (724)
...+.-.+..|.++.|++.|..++.++|.....+...+.++..+++...|+..+..++.++|+....+-..+.....+|+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 34466677889999999999999999999999999999999999999999999999999999999988888888899999
Q ss_pred hHHHHHHHHHHHHhCCC
Q psy6603 112 LEGYRETRYQLFMLRPT 128 (724)
Q Consensus 112 ~~~A~~~~~~~l~~~p~ 128 (724)
|++|...+..+.+++-+
T Consensus 198 ~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHHHHHHHhcccc
Confidence 99999999999988754
No 281
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.11 E-value=0.26 Score=46.58 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=94.4
Q ss_pred HHcCCHHHHHHHHHHHHHhh-ccCCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhhcc--------------H
Q psy6603 141 HLLHDFDMACNILEAFRKTQ-QVTNSYDFEHSELLLYQSMVIQDSG-DLEEAVKHLDRFKEQIHD--------------K 204 (724)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~p~--------------~ 204 (724)
.+.|+.+.|..++.++.... ...|+........++..|......+ +++.|..+++++.+..+. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45788888888888877766 5566655566778888999999999 999999999999887311 1
Q ss_pred hhHHHHHHHHHHHcCChH---HHHHHHHHHHHHcCCcHHHH-HHHHHHhccCChHHHHHHHHHHHHhCC
Q psy6603 205 LTVEETYGALKLKLGQYN---EAMKHYESLIERNQENTLYY-NKLVEAKQLTNNDDIFQLLTHYISKYP 269 (724)
Q Consensus 205 ~~~~~~la~~~~~~g~~~---~A~~~~~~~~~~~p~~~~~~-~~l~~~~~~~~~~~a~~~~~~~~~~~~ 269 (724)
..++..++.++...+.++ +|....+.+-...|+.+..+ ..+-.+.+.++.+.+.+.+.+++...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 346778888898887764 45555556656678777666 444444556888888888888887755
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.08 E-value=0.00051 Score=40.65 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=17.9
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhh
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKW 585 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 585 (724)
+|..+|.+|...|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777775543
No 283
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.02 E-value=0.26 Score=47.32 Aligned_cols=166 Identities=14% Similarity=0.081 Sum_probs=112.4
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhh----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----h
Q psy6603 38 LNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS----DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ----M 109 (724)
Q Consensus 38 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~ 109 (724)
....+++..|...+..+-.. ........++.++.. ..+..+|..+|..+. ...++.+.+.||.++.. .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcc
Confidence 34567788888888887652 223566667777665 346788888888544 46778888889988876 4
Q ss_pred cchHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH
Q psy6603 110 RDLEGYRETRYQLFMLRPTQ-RASWIGFAMAYHLLH-------DFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVI 181 (724)
Q Consensus 110 ~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 181 (724)
.+..+|...|+++.+..... ..+...++..+..-. +...|...+.++.... +..+...+|.+|
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---------~~~a~~~lg~~y 197 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---------NPDAQLLLGRMY 197 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---------CHHHHHHHHHHH
Confidence 58889999999888875443 344667777666542 2225666666655544 456777777666
Q ss_pred HH----cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcC
Q psy6603 182 QD----SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLG 219 (724)
Q Consensus 182 ~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 219 (724)
.. ..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 198 ~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 198 EKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 55 3477888888888877665 66666777 666555
No 284
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.00 E-value=0.37 Score=46.46 Aligned_cols=231 Identities=10% Similarity=-0.003 Sum_probs=136.1
Q ss_pred HHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhh
Q psy6603 411 WLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCH 490 (724)
Q Consensus 411 ~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 490 (724)
.+++++..-|-.+.++......+...++-+.|+....+.....|...- .++..|.-..+-++.-.+|+
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~------------~lse~yel~nd~e~v~~~fd 357 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTM------------FLSEYYELVNDEEAVYGCFD 357 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhe------------eHHHHHhhcccHHHHhhhHH
Confidence 456667667777888888888899999999999999999887766211 14444444444444444454
Q ss_pred hhhhHhhh---hhchHHHHHH------HHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHH
Q psy6603 491 EVDRKCYE---HKQYKNGLKF------AKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHV 561 (724)
Q Consensus 491 ~~~~~~~~---~~~~~~A~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 561 (724)
++...+.. +++-+.+-.. ...+..... ....-+|..+-..-.+..-.+.|..+|-++-+..-..+.++..
T Consensus 358 k~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~-~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~ 436 (660)
T COG5107 358 KCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRI-NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIY 436 (660)
T ss_pred HHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHH-hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeee
Confidence 44322111 1111111000 000000000 0111244444555555666778888888887765334443332
Q ss_pred HH-HHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHh-hhhhh--hhhhhhhHHHHHHH
Q psy6603 562 YG-LLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMEN-LNEMQ--CMWFQTECALAYQR 637 (724)
Q Consensus 562 l~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~~la~~~~~ 637 (724)
-| .-+...|++..|-..|+-.+...|+++......-..+...++-+.|+..|+.... ....+ +.| -.+...-..
T Consensus 437 ~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy--~kmi~YEs~ 514 (660)
T COG5107 437 CAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIY--DKMIEYESM 514 (660)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHH--HHHHHHHHh
Confidence 22 3355688999999999999999999987777777777888999999988885332 22221 222 222224456
Q ss_pred hCChhHHHHHHHHHHHHHh
Q psy6603 638 LGRWGDTLKKCHEVDRHFS 656 (724)
Q Consensus 638 ~g~~~~A~~~~~~~~~~~~ 656 (724)
-|+...++.+=++..+.++
T Consensus 515 ~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 515 VGSLNNVYSLEERFRELVP 533 (660)
T ss_pred hcchHHHHhHHHHHHHHcC
Confidence 6777777765555554433
No 285
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.91 E-value=0.042 Score=53.54 Aligned_cols=188 Identities=11% Similarity=-0.064 Sum_probs=98.4
Q ss_pred cchhhHHHHHHHhhC--CC--------CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q psy6603 6 KQYKNGLKFAKQILT--NP--------KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD 75 (724)
Q Consensus 6 ~~~~~A~~~~~~~l~--~p--------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 75 (724)
..|+++...|..++. +| .+|-+.+++..++.++..+|+...|.+++++++-.-.......+..-..-...
T Consensus 8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~ 87 (360)
T PF04910_consen 8 KAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 456666666655544 11 45566666666666666666666666666666521100000000000000000
Q ss_pred CCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-chhHHHHHHH-HHHHcCCHHHHH
Q psy6603 76 KKYDEAIKCYRNALKWEHDNI---QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT-QRASWIGFAM-AYHLLHDFDMAC 150 (724)
Q Consensus 76 g~~~~A~~~~~~a~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~-~~~~~g~~~~A~ 150 (724)
|.- . .--..+.|. .+++.......+.|-+..|.+..+-.+.++|. +|-....... ...+.++++--+
T Consensus 88 g~~---r-----L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li 159 (360)
T PF04910_consen 88 GNC---R-----LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLI 159 (360)
T ss_pred Ccc---c-----cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHH
Confidence 000 0 000012232 25566677778899999999999999999998 7765444444 445667777777
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHhhhhcc
Q psy6603 151 NILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL---------------EEAVKHLDRFKEQIHD 203 (724)
Q Consensus 151 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~---------------~~A~~~~~~~~~~~p~ 203 (724)
+.++........+ .....+...+..+.++...++. +.|...+.+++...|.
T Consensus 160 ~~~~~~~~~~~~~--~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 160 DFSESPLAKCYRN--WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhHhhhhhhh--hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 7666544321000 0001123555556666666665 5666666666666553
No 286
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.89 E-value=0.43 Score=45.81 Aligned_cols=165 Identities=15% Similarity=0.067 Sum_probs=121.1
Q ss_pred ccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhh----
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCL----GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS---- 74 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~---- 74 (724)
+..+++..|...+..+-.. .++.....++.++..- .+..+|..+|+.+.. ...+.+.+.+|.++..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~----~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL----GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhc----CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCc
Confidence 4567888888888887651 2235677777776544 468889999996544 5667788889999987
Q ss_pred cCCHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHhc-------chHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----
Q psy6603 75 DKKYDEAIKCYRNALKWEHDN-IQIMRDLSLLQIQMR-------DLEGYRETRYQLFMLRPTQRASWIGFAMAYHL---- 142 (724)
Q Consensus 75 ~g~~~~A~~~~~~a~~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---- 142 (724)
..+..+|..+|+++....-.. ..+...++.++..-. +...|...|.++.... ++.+...+|.+|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence 448999999999999864443 344888888887642 2337888888887776 67788888888765
Q ss_pred cCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcC
Q psy6603 143 LHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSG 185 (724)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g 185 (724)
..++.+|..+|..+.+.. +....+.++ ++...|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g---------~~~a~~~~~-~~~~~g 236 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG---------DGAACYNLG-LMYLNG 236 (292)
T ss_pred CcCHHHHHHHHHHHHHCC---------CHHHHHHHH-HHHhcC
Confidence 458899999999887765 256777777 666655
No 287
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.88 E-value=0.0012 Score=38.29 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=16.4
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhccc
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 588 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 588 (724)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555554
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.85 E-value=0.0016 Score=37.77 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=18.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK 60 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 60 (724)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555566666666666666666666655554
No 289
>KOG0890|consensus
Probab=96.82 E-value=1 Score=53.28 Aligned_cols=120 Identities=13% Similarity=0.039 Sum_probs=78.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHH
Q psy6603 135 GFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGAL 214 (724)
Q Consensus 135 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 214 (724)
.++.+-++.+.|..|+-.+++. ...+.........+..+-.+|...++++.-.-....- ...| ........
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~----~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-~a~~----sl~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH----RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-FADP----SLYQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh----ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-hcCc----cHHHHHHH
Confidence 5788888999999999888875 1111111223344455555888888888766665531 1122 23444556
Q ss_pred HHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHH
Q psy6603 215 KLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTH 263 (724)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~ 263 (724)
....|++..|..+|+++++.+|+....+...... +..|.+...+...+-
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg 1508 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDG 1508 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcc
Confidence 6778999999999999999999876555554444 666777766654433
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.81 E-value=0.11 Score=42.76 Aligned_cols=85 Identities=14% Similarity=-0.035 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 108 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 108 (724)
..+..........++.+++..++...--+.|+.+..-..-|.++...|+|.+|+..|+.+....|..+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45666777777888888888888888888888888888888888888999999999988888888888888888888877
Q ss_pred hcchH
Q psy6603 109 MRDLE 113 (724)
Q Consensus 109 ~~~~~ 113 (724)
+|+.+
T Consensus 91 ~~D~~ 95 (160)
T PF09613_consen 91 LGDPS 95 (160)
T ss_pred cCChH
Confidence 77643
No 291
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.69 E-value=0.22 Score=48.07 Aligned_cols=164 Identities=10% Similarity=0.012 Sum_probs=100.6
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhcc------------hHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHH
Q psy6603 83 KCYRNALKWEHDNIQIMRDLSLLQIQMRD------------LEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMAC 150 (724)
Q Consensus 83 ~~~~~a~~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 150 (724)
.-|++.++.+|.+.++|..+....-..-. .+.-+.++++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788889999999999999877654432 456677889999999999988888888888888777777
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHH---HcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHH
Q psy6603 151 NILEAFRKTQQVTNSYDFEHSELLLYQSMVIQ---DSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKH 227 (724)
Q Consensus 151 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 227 (724)
+.+++++... |+ ....|........ ..-.++.....|.+++..-....... ..........
T Consensus 86 ~~we~~l~~~---~~----~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~---------~~~~~~~~~~ 149 (321)
T PF08424_consen 86 KKWEELLFKN---PG----SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR---------MTSHPDLPEL 149 (321)
T ss_pred HHHHHHHHHC---CC----ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc---------cccccchhhH
Confidence 6666665554 43 3344443322222 23356677777776665432111100 0000000000
Q ss_pred HHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCC
Q psy6603 228 YESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYP 269 (724)
Q Consensus 228 ~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~ 269 (724)
-.. -...+..+... ...|..+.|+..++..++.+-
T Consensus 150 e~~-------~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 150 EEF-------MLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHH-------HHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 000 11233444444 456999999999999998843
No 292
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.69 E-value=1.4 Score=48.62 Aligned_cols=95 Identities=22% Similarity=0.185 Sum_probs=71.3
Q ss_pred ccccchhhHHHHHHHhhCCCCCCC---hHHHHHHHHHHHhcc----C---CHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAE---HGETLAMKGLTLNCL----G---RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQ 72 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~---~~~~~~~~a~~~~~~----g---~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 72 (724)
...+.|++|+..|+++.. .+|. --++.+..|..+..+ | .+++|+..|++.- -.|.-|.-|...+.+|
T Consensus 486 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRE--SFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVY 562 (932)
T ss_pred HhhHHHHHHHHHHHHHhh--cCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHH
Confidence 456789999999999988 5554 446778888776543 2 4667777777643 3456666688888899
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy6603 73 RSDKKYDEAIKCYRNALKWEHDNIQIMR 100 (724)
Q Consensus 73 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 100 (724)
.++|++++-+++|.-|++..|+.|.+-.
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 563 QRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 9999999999999999998888876543
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.68 E-value=0.05 Score=44.75 Aligned_cols=86 Identities=19% Similarity=0.069 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHH
Q psy6603 355 LWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYML 434 (724)
Q Consensus 355 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 434 (724)
+..+..+..+-...++.+++...+..+--+.|..+..-..-|+++...|++.+|+..|+.+....|..+.....++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 33455666666778999999999999999999999999999999999999999999999999999999988888899998
Q ss_pred HcCCHH
Q psy6603 435 RANLIK 440 (724)
Q Consensus 435 ~~g~~~ 440 (724)
..|+.+
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 888754
No 294
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.64 E-value=0.029 Score=42.52 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=51.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCchhH---HHHHHHHHhhcCC-----------HHHHHHHHHHHHhhCCCcHHHHH
Q psy6603 35 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVC---WHVYGLLQRSDKK-----------YDEAIKCYRNALKWEHDNIQIMR 100 (724)
Q Consensus 35 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~lg~~~~~~g~-----------~~~A~~~~~~a~~~~p~~~~~~~ 100 (724)
+..++..|++-+|+++.+..+...+++..+ +..-|.++..+.. .--++++|.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 455666777777777777777666665533 3333555543221 12356666666666666666666
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHH
Q psy6603 101 DLSLLQIQMRDLEGYRETRYQLFM 124 (724)
Q Consensus 101 ~la~~~~~~~~~~~A~~~~~~~l~ 124 (724)
.+|.-+.....|+++..-.++.+.
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 666655555555555555555444
No 295
>KOG3824|consensus
Probab=96.63 E-value=0.0046 Score=55.49 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=64.9
Q ss_pred hhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHH
Q psy6603 528 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 599 (724)
Q Consensus 528 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 599 (724)
.+.-..+.|+.++|...|+-++.+.|+++.++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+..
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344456789999999999999999999999999999999999999999999999999999999998876654
No 296
>KOG1538|consensus
Probab=96.63 E-value=0.53 Score=47.60 Aligned_cols=206 Identities=15% Similarity=0.117 Sum_probs=119.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCccc----hhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHH
Q psy6603 393 VTKGRIYKHAGDVLEAYKWLDEAQSLDTAD----RYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWF 468 (724)
Q Consensus 393 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (724)
..++.++.-.|++.+|.+.|.+.-..+..- ..-.+..+.-++..|..++-..+.++-..-..+..+.
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP--------- 706 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP--------- 706 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---------
Confidence 457888888899999998887643222110 0011233455555555555544444432200000000
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHh
Q psy6603 469 QTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRG 548 (724)
Q Consensus 469 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 548 (724)
..-+..+...|+..+|+.+.- +.|-.+-++.+-..+.. ...+.+...+.-+.+...+.-|-+.|.+.
T Consensus 707 -kaAAEmLiSaGe~~KAi~i~~-------d~gW~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 707 -KAAAEMLISAGEHVKAIEICG-------DHGWVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred -HHHHHHhhcccchhhhhhhhh-------cccHHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 113566667777777766532 33444445555444433 23345666666666677777777777765
Q ss_pred hhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhh
Q psy6603 549 LRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQ 628 (724)
Q Consensus 549 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 628 (724)
-++ -.+-.++...+++++|...-++--+.-| +++.-.|..+....++++|.+
T Consensus 774 gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqk----------------- 825 (1081)
T KOG1538|consen 774 GDL--------KSLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQK----------------- 825 (1081)
T ss_pred ccH--------HHHhhheeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHH-----------------
Confidence 432 1244566778888888777665433332 466666777777777777766
Q ss_pred hhHHHHHHHhCChhHHHHHHHHHHH
Q psy6603 629 TECALAYQRLGRWGDTLKKCHEVDR 653 (724)
Q Consensus 629 ~~la~~~~~~g~~~~A~~~~~~~~~ 653 (724)
+|.+.|+-.||..+++++-.
T Consensus 826 -----AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 826 -----AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -----HHHHhcchHHHHHHHHHhhh
Confidence 67788999999988876653
No 297
>KOG3824|consensus
Probab=96.62 E-value=0.0059 Score=54.78 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=48.8
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy6603 73 RSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMA 139 (724)
Q Consensus 73 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 139 (724)
...|+.++|...|+.|+.+.|.+++++..+|......++.-+|-.+|-+++.+.|.+.+++.+.++.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 4467777777777777777777777777777777777777777777777777777777776666543
No 298
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.60 E-value=0.79 Score=44.64 Aligned_cols=129 Identities=10% Similarity=0.091 Sum_probs=84.6
Q ss_pred ccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHH
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAI 82 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 82 (724)
...|+.-.|-.....++. ..|.++......+.+....|.|+.|...+..+-..-.....+...+-......|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr--~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALR--NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHH--hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 345666666666666666 445555566667777777888887777776554433333334444455566677788887
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHH
Q psy6603 83 KCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133 (724)
Q Consensus 83 ~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 133 (724)
..-.-.+...-+++++..--+.....+|-++++...+++++.++|.....|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 777777766666666666666666677777888888888887777644433
No 299
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.54 E-value=0.013 Score=37.86 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=28.5
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHH
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 597 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 597 (724)
.++.++..+.++|+|++|..+.+.++++.|+|..+..-..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4667777888888888888888888888888877665443
No 300
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.45 E-value=0.017 Score=37.43 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=17.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHH
Q psy6603 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIM 99 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 99 (724)
.+.++..+.+.|+|++|..+.+.+++..|+|.++.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 44445555555555555555555555555554443
No 301
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.43 E-value=0.051 Score=40.34 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q psy6603 48 YEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN 95 (724)
Q Consensus 48 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~ 95 (724)
+..+++.+..+|++..+.+.++..+...|++++|+..+-.++..+++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 445556666666666666666666666666666666666666665543
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.37 E-value=0.18 Score=43.43 Aligned_cols=98 Identities=24% Similarity=0.201 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--ccchh----h
Q psy6603 355 LWVYHYLAQHYDHLGDTMKALNYINAAIDHTPT---LIELFVTKGRIYKHAGDVLEAYKWLDEAQSLD--TADRY----I 425 (724)
Q Consensus 355 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~----~ 425 (724)
..++..+|..|.+.|+.+.|++.|.++.+.... ..+.++.+.++....|++..+..++.++..+- +.+.. +
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 346779999999999999999999998887644 46788889999999999999999999988772 23322 2
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHHhhhc
Q psy6603 426 NSKCAKYMLRANLIKEAEETCSKFTRE 452 (724)
Q Consensus 426 ~~~~~~~~~~~g~~~~A~~~~~~~~~~ 452 (724)
....|..++..+++.+|-+.|-.+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 334577788889999999999887653
No 303
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.35 E-value=0.011 Score=34.87 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q psy6603 208 EETYGALKLKLGQYNEAMKHYESLI 232 (724)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~ 232 (724)
+..+|.++...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.33 E-value=0.058 Score=46.43 Aligned_cols=103 Identities=11% Similarity=-0.062 Sum_probs=55.3
Q ss_pred HHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccc---hHHHHHHHHhccccHHHHHHHHHHHhhhcc--ccHHHHHHHH
Q psy6603 523 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV---CWHVYGLLQRSDKKYDEAIKCYRNALKWEH--DNIQIMRDLS 597 (724)
Q Consensus 523 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~ 597 (724)
.++..+|..|.+.|+.++|++.|.++.+....... .+..+..+....+++.....+..++-..-. .+......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr-- 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR-- 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH--
Confidence 35556666666666666666666655543222211 444444555555555555555555544211 11111111
Q ss_pred HHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHh
Q psy6603 598 LLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFS 656 (724)
Q Consensus 598 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 656 (724)
+....|..+...|+|.+|-+.|-.+...|.
T Consensus 115 -----------------------------lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 -----------------------------LKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred -----------------------------HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 113455677888999999998887776554
No 305
>KOG0128|consensus
Probab=96.31 E-value=1.8 Score=45.57 Aligned_cols=422 Identities=13% Similarity=0.024 Sum_probs=224.9
Q ss_pred HHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH---hhcCCHHHHHHHHHHH
Q psy6603 12 LKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQ---RSDKKYDEAIKCYRNA 88 (724)
Q Consensus 12 ~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~---~~~g~~~~A~~~~~~a 88 (724)
+..++.-+. .++.+......+-.++...|++++-...-.++.+..|.++..|.....-. ...+.-.++...|+++
T Consensus 99 i~t~~ee~a--i~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~eka 176 (881)
T KOG0128|consen 99 IRTLEEELA--INSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKA 176 (881)
T ss_pred HHHHHHHhc--ccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHH
Confidence 344444445 34555667777788889999998877777777788888888876654332 2347888899999999
Q ss_pred HhhCCCcHHHHHHHHHHHH-------HhcchHHHHHHHHHHHHhCCC-------chhHHHHHHHHHHHcCCHHHHHHHHH
Q psy6603 89 LKWEHDNIQIMRDLSLLQI-------QMRDLEGYRETRYQLFMLRPT-------QRASWIGFAMAYHLLHDFDMACNILE 154 (724)
Q Consensus 89 ~~~~p~~~~~~~~la~~~~-------~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~ 154 (724)
+. +-.++.+|...+.... ..++++.-...|.+++..--. ....+...-..|...-..++-+.++.
T Consensus 177 l~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~ 255 (881)
T KOG0128|consen 177 LG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFV 255 (881)
T ss_pred hc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 87 4555566655554443 446677778888888764322 22333344444444444444554444
Q ss_pred HHHHhhccCCCCChhhHHHHHHHH--H-HHHHcCCHHHHHHHH-------HHHhhhhccHhhHHHHHHHHHHHcCChHHH
Q psy6603 155 AFRKTQQVTNSYDFEHSELLLYQS--M-VIQDSGDLEEAVKHL-------DRFKEQIHDKLTVEETYGALKLKLGQYNEA 224 (724)
Q Consensus 155 ~~~~~~~~~p~~~~~~~~~~~~~~--~-~~~~~g~~~~A~~~~-------~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 224 (724)
.-+... .+-+ .....+.... . ......+++.|...+ ++.+...|.-...+..+...-...|.+-.-
T Consensus 256 ~el~~~-~D~~---~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri 331 (881)
T KOG0128|consen 256 RELKQP-LDED---TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRI 331 (881)
T ss_pred HHHhcc-chhh---hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 433222 1111 1111111111 1 112244555555543 334444455555677777888889999988
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCCCcccccc-ccccCchhHHHHHHHHHHhhhhc
Q psy6603 225 MKHYESLIERNQENTLYYNKLVEAKQ--LTNNDDIFQLLTHYISKYPKATVPKRLS-LNYVSGDQFRTEIDKYLRHGFHK 301 (724)
Q Consensus 225 ~~~~~~~~~~~p~~~~~~~~l~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 301 (724)
...+++++...+.+...|...+.... ++-.+.+...+.+++...|......... +.+...+...+.+...+...+..
T Consensus 332 ~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~ 411 (881)
T KOG0128|consen 332 QLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSM 411 (881)
T ss_pred HHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence 89999999999988998988887742 3444444555555555544432211111 11111111112222222221111
Q ss_pred CCchhhhhhHHhhhchh---hHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHH-hcCCHHHHHHH
Q psy6603 302 GVPPLFVNLRSLYSNTE---KCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYD-HLGDTMKALNY 377 (724)
Q Consensus 302 ~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~ 377 (724)
++. .+........... ....+...-..|..+......+.. . ..++...++-..|.+.. ..++.+.|..+
T Consensus 412 ~~~-l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~----~--~~Dt~~~~~q~wA~~E~sl~~nmd~~R~i 484 (881)
T KOG0128|consen 412 TVE-LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYG----D--QLDTRTEVLQLWAQVEASLLKNMDKAREI 484 (881)
T ss_pred HHH-HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhh----h--hhhhHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 111 0111111111111 112233333333333322111110 0 01122223333344333 36788899988
Q ss_pred HHHHHhcCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHcc--Cccc-hhhhhhHHHHHHHcCCHHHHHHHHH
Q psy6603 378 INAAIDHTPTLIE-LFVTKGRIYKHAGDVLEAYKWLDEAQSL--DTAD-RYINSKCAKYMLRANLIKEAEETCS 447 (724)
Q Consensus 378 ~~~~l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~ 447 (724)
.+..+...-.... .|+....+-...|+...+...+++++.. +|++ ..++..+-......|.++.......
T Consensus 485 Wn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 485 WNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred hhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHH
Confidence 8887776655554 7888888888889999999988888875 3332 2333333334444455555444333
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.31 E-value=0.25 Score=39.89 Aligned_cols=109 Identities=17% Similarity=-0.045 Sum_probs=81.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 109 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 109 (724)
.+..........++.+++..++...--+.|+.+..-..-|.++...|+|.+|+..|+...+-.+..+-..-.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 44455555666899999999999888889999999888899999999999999999999887777787778888888777
Q ss_pred cchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6603 110 RDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFR 157 (724)
Q Consensus 110 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 157 (724)
|+.+ |...+......+...+|+.+.+.+.
T Consensus 92 ~Dp~-------------------Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 92 GDAE-------------------WHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred CChH-------------------HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 7643 4444444445555555555544443
No 307
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.31 E-value=0.14 Score=51.33 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHH
Q psy6603 555 SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALA 634 (724)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 634 (724)
++..|..+|......|+++-|.++|+++-.. ..|..+|...|+.+...+..+..........++. +
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~------~ 411 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKDF--------SGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQ------A 411 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------HHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHH------H
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------cccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHH------H
Confidence 4446666666666677777777666665432 2455566666666555555554444444333332 5
Q ss_pred HHHhCChhHHHHHHH
Q psy6603 635 YQRLGRWGDTLKKCH 649 (724)
Q Consensus 635 ~~~~g~~~~A~~~~~ 649 (724)
+...|+.++.++++.
T Consensus 412 ~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 412 ALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHT-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 556666666666554
No 308
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.28 E-value=0.016 Score=43.82 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=71.3
Q ss_pred cccccchhhHHHHHHHhhC-CCCCCChHHHHHHHHHHHhccCC-----------HHHHHHHHHHHHHcCCCchhHHHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGR-----------KEEAYEYVRRGLRNDLKSHVCWHVYG 69 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~-~p~~p~~~~~~~~~a~~~~~~g~-----------~~~A~~~~~~~l~~~p~~~~~~~~lg 69 (724)
+|..|++-+|+++.+.++. .+.+.+....+...|.++..+.. .-.+++.|.++..+.|..+..++.+|
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la 85 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELA 85 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHH
Confidence 5789999999999999888 33333333667788888866542 23589999999999999988899999
Q ss_pred HHHhhcCCHHHHHHHHHHHHhh
Q psy6603 70 LLQRSDKKYDEAIKCYRNALKW 91 (724)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~a~~~ 91 (724)
.-+.....|++++.-.++++.+
T Consensus 86 ~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 86 SQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHhhhHHHHHHHHHHHHHHhcc
Confidence 8888778888888888888765
No 309
>KOG1464|consensus
Probab=96.26 E-value=0.79 Score=40.95 Aligned_cols=204 Identities=15% Similarity=0.145 Sum_probs=120.6
Q ss_pred cCCHHHHHHHHHHHhhhhccHh----hHHHHHHHHHHHcCChHHHHHHHHHHHHHcC-------CcHHHHHHHHHHhccC
Q psy6603 184 SGDLEEAVKHLDRFKEQIHDKL----TVEETYGALKLKLGQYNEAMKHYESLIERNQ-------ENTLYYNKLVEAKQLT 252 (724)
Q Consensus 184 ~g~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~~l~~~~~~~ 252 (724)
..++++|+..|++++++.|... .++..+..+.+++|++++-...|.+++..-. ........+..+-...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3488999999999999987653 3677888999999999999998888765311 1111111111111112
Q ss_pred ChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHH
Q psy6603 253 NNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVE 332 (724)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (724)
+.+--...|+..+....+ .....-....-..++.+|.+.+......+.+..+..
T Consensus 120 ~m~LLQ~FYeTTL~ALkd--------------------------AKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKD--------------------------AKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hhHHHHHHHHHHHHHHHh--------------------------hhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 222222222222111111 001111223344578888888887778888877777
Q ss_pred HHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHH--H----HHHHHHHHHcCCHH
Q psy6603 333 ALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIEL--F----VTKGRIYKHAGDVL 406 (724)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~----~~l~~~~~~~g~~~ 406 (724)
.......-. ..........+|-.-.+.|....+-.+-..+|++++.+...-|.. . -.=|..+.+.|+++
T Consensus 174 SCq~edGed-----D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe 248 (440)
T KOG1464|consen 174 SCQTEDGED-----DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFE 248 (440)
T ss_pred HhccccCch-----hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHH
Confidence 665422111 111123334455566677878888888888899998775432222 1 11245677889999
Q ss_pred HHHHHHHHHHcc
Q psy6603 407 EAYKWLDEAQSL 418 (724)
Q Consensus 407 ~A~~~~~~a~~~ 418 (724)
+|-..|=.|.+.
T Consensus 249 ~AhTDFFEAFKN 260 (440)
T KOG1464|consen 249 KAHTDFFEAFKN 260 (440)
T ss_pred HHHhHHHHHHhc
Confidence 999888888876
No 310
>KOG3783|consensus
Probab=96.25 E-value=0.88 Score=45.32 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=57.7
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--chhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK--SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 100 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 100 (724)
..|+.+..++..+..+...|+.+.|+..++..++..-. ...+++.+|.++.-+.+|..|-..+......+.-+...+.
T Consensus 262 ~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~ 341 (546)
T KOG3783|consen 262 RYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYT 341 (546)
T ss_pred hCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHH
Confidence 56777778888888888888888888888877761111 1234667788888888999998888887776554444454
Q ss_pred HHH
Q psy6603 101 DLS 103 (724)
Q Consensus 101 ~la 103 (724)
.++
T Consensus 342 Yfa 344 (546)
T KOG3783|consen 342 YFA 344 (546)
T ss_pred HHH
Confidence 554
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.19 E-value=0.59 Score=38.73 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=19.7
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhh
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR 550 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 550 (724)
.+|-...+-..||..-++.|++.+|.+.|.....
T Consensus 162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3344444555566666666666666666665554
No 312
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.18 E-value=0.32 Score=37.22 Aligned_cols=98 Identities=20% Similarity=0.249 Sum_probs=59.3
Q ss_pred hhhcCChHHHHHHHHHhhhcCCC------------ccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHH
Q psy6603 532 LNCLGRKEEAYEYVRRGLRNDLK------------SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 599 (724)
Q Consensus 532 ~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 599 (724)
...-|-+++|...++++++...+ +..++-.|+.++..+|+|++++..-.+++... +..|
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF-------NRRG-- 89 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF-------NRRG-- 89 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-------HHH---
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-------hhcc--
Confidence 34457788888888888775322 22255667777777777777776666655421 0111
Q ss_pred HHHhhhHhhHHHHHHHHHhhhhh-hhhhhh--hhHHHHHHHhCChhHHHHHHHHHHHHHh
Q psy6603 600 QIQMRDLEGYREGVSAMENLNEM-QCMWFQ--TECALAYQRLGRWGDTLKKCHEVDRHFS 656 (724)
Q Consensus 600 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~--~~la~~~~~~g~~~~A~~~~~~~~~~~~ 656 (724)
.++.. ...|+. +..|..+...|+.++|++.|+.+-+...
T Consensus 90 ------------------EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 90 ------------------ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp -------------------TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred ------------------ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 11111 144443 5667789999999999999998877643
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.12 E-value=0.22 Score=40.26 Aligned_cols=83 Identities=16% Similarity=-0.088 Sum_probs=72.6
Q ss_pred HHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHh
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 603 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 603 (724)
.+......-...++.+++...+..+--+.|+.+..-..-|.++...|++.+|+..|+...+-.+..+...-.++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 44444555556899999999999988899999999999999999999999999999999998888888888899998888
Q ss_pred hhH
Q psy6603 604 RDL 606 (724)
Q Consensus 604 ~~~ 606 (724)
||.
T Consensus 92 ~Dp 94 (153)
T TIGR02561 92 GDA 94 (153)
T ss_pred CCh
Confidence 883
No 314
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.09 E-value=0.089 Score=39.06 Aligned_cols=68 Identities=18% Similarity=0.090 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHcCCHHH
Q psy6603 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQ--RASWIGFAMAYHLLHDFDM 148 (724)
Q Consensus 81 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~ 148 (724)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+|+. ..+...+..++...|.-+.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 3567888899999999999999999999999999999999999998774 4565666666665555433
No 315
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=96.09 E-value=1.2 Score=41.37 Aligned_cols=212 Identities=13% Similarity=0.142 Sum_probs=110.6
Q ss_pred hhcchhhhhhhhhhhhhHhhhhhchHHHHHHH----HHHhcCCCCCchhHHHHhhhhHhhhcCChH-HHHHHHHHhhhc-
Q psy6603 478 RLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFA----KQILTNPKYAEHGETLAMKGLTLNCLGRKE-EAYEYVRRGLRN- 551 (724)
Q Consensus 478 ~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~- 551 (724)
+.+++++|++++.+-...+.+.+++.-|..+. +.+... ..+.+.+....++.++...+.-+ +-....+++++-
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~-~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS 80 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKS-EDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS 80 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 45677777777777777777777766655543 222222 33344445566666666554332 223333344432
Q ss_pred -----CCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHH--HHHHHHHhhhHhhHHHHHHHHHhhhhhhh
Q psy6603 552 -----DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD--LSLLQIQMRDLEGYREGVSAMENLNEMQC 624 (724)
Q Consensus 552 -----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 624 (724)
.-.++..+..+|..+.+.|++.+|..+|-.. +++..... +.. ....+..+...
T Consensus 81 ~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~---------------~~~~~~~~~e~ 140 (260)
T PF04190_consen 81 KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLE---------------EWSTKGYPSEA 140 (260)
T ss_dssp HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHH---------------HHHHHTSS--H
T ss_pred ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHH---------------HHHHhcCCcch
Confidence 2235568888899999888888888777543 22222211 111 11112223332
Q ss_pred hhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc-------------cchhHHHHH---hhhhHHHHHH-HHhHHhh
Q psy6603 625 MWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEIIED-------------QFDFHTYCM---RKMTLRSYVR-LLRLEDV 687 (724)
Q Consensus 625 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~~~y~~-~~~~~~~ 687 (724)
..+-......|...|+...|...+....+.+....|+ .+++..++. .+.....+.. ..+|...
T Consensus 141 dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~ 220 (260)
T PF04190_consen 141 DLFIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPS 220 (260)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH-
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCcc
Confidence 2222445567888999999999998888774332211 122332221 1222233443 4667777
Q ss_pred hcCChHHHHHHHHHHHHHHHhhc
Q psy6603 688 LRSHPFYYTAARCAIQVYLRLHD 710 (724)
Q Consensus 688 ~~~~~~~~~~~~~~~~~y~~~~~ 710 (724)
|+..|.|....-..+++|+.+-.
T Consensus 221 L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 221 LKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp --HHHHTHHHHHHHHHHHH---S
T ss_pred ccccHHHHHHHHHHHHHHCCCCC
Confidence 88889999999999999999875
No 316
>PRK10941 hypothetical protein; Provisional
Probab=96.07 E-value=0.11 Score=48.04 Aligned_cols=80 Identities=14% Similarity=-0.017 Sum_probs=69.7
Q ss_pred CCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhh
Q psy6603 348 VEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINS 427 (724)
Q Consensus 348 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 427 (724)
..+..........+-.+|.+.++++.|+.+.+.++...|+++.-+.-.|.+|.+.|.+..|...++..++..|+++.+..
T Consensus 174 a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 174 ADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 33444555566678888999999999999999999999999999999999999999999999999999999999876543
No 317
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.05 E-value=0.29 Score=37.39 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH----hhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q psy6603 131 ASWIGFAMAYHLLHDFDMACNILEAFRK----TQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKE 199 (724)
Q Consensus 131 ~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 199 (724)
.++..|+.++..+|+|++++..-+..+. ....+.+....+..+.+.++..+...|+.++|+..|+.+-+
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4566677777788888777655444332 22223332333455556666666666666666666666543
No 318
>PRK10941 hypothetical protein; Provisional
Probab=96.04 E-value=0.077 Score=48.93 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=35.2
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCC
Q psy6603 101 DLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 101 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p 164 (724)
++-.++.+.++++.|+.+.+.++...|+++.-+...|.+|.+.|.+..|..-++.+++..+..|
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 3444555555555555555555555555555555555555555555555555555555554444
No 319
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.96 E-value=0.011 Score=33.93 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=17.0
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhccc
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 588 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 588 (724)
++..+|.++...|++++|+.+|+++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555555555555555555555555543
No 320
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.96 E-value=0.78 Score=38.07 Aligned_cols=121 Identities=10% Similarity=0.099 Sum_probs=57.3
Q ss_pred cchHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCH
Q psy6603 110 RDLEGYRETRYQLFMLRPTQ--RASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL 187 (724)
Q Consensus 110 ~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 187 (724)
+..++|+..|..+-+..-.. ..+.+..+.+....|+-..|+..|+.+-...+ .|. .....+.+.-+.++...|.|
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~--~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQ--IGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-Ccc--hhhHHHHHHHHHHHhccccH
Confidence 44445555444443333221 12334445555555555555555554332221 111 11223334444555556666
Q ss_pred HHHHHHHHHHh-hhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6603 188 EEAVKHLDRFK-EQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIE 233 (724)
Q Consensus 188 ~~A~~~~~~~~-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 233 (724)
++-....+..- ..+|-...+...||..-.+.|++..|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555444332 22344445556666666666666666666666554
No 321
>KOG1538|consensus
Probab=95.93 E-value=2.3 Score=43.34 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCH
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLI 439 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~ 439 (724)
.+.+.+...+++++|..+.++.-+.- ++.++..|.-+....++++|.+.|-+ .|+.
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhk---------------------AGr~ 833 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHK---------------------AGRQ 833 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHH---------------------hcch
Confidence 34455667788888887776543333 44677778888888888888776644 4666
Q ss_pred HHHHHHHHHhhh
Q psy6603 440 KEAEETCSKFTR 451 (724)
Q Consensus 440 ~~A~~~~~~~~~ 451 (724)
.+|...+++...
T Consensus 834 ~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 834 REAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHHhhh
Confidence 777777776654
No 322
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.93 E-value=0.11 Score=46.33 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=56.2
Q ss_pred CchhHHHHhhhhHhhhcCChHH-------HHHHHHHhhhcCC--Cc----cchHHHHHHHHhccccHHHHHHHHHHHhhh
Q psy6603 519 AEHGETLAMKGLTLNCLGRKEE-------AYEYVRRGLRNDL--KS----HVCWHVYGLLQRSDKKYDEAIKCYRNALKW 585 (724)
Q Consensus 519 ~~~~~~~~~l~~~~~~~g~~~~-------A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 585 (724)
...+..+..+|++|...|+.+. |.+.|.++++... .. ..+.+.+|.+..+.|++++|+.+|.+++..
T Consensus 115 s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 115 SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3457789999999999999554 5555555554432 22 238889999999999999999999999985
Q ss_pred ccccH-HHHHHHH
Q psy6603 586 EHDNI-QIMRDLS 597 (724)
Q Consensus 586 ~p~~~-~~~~~l~ 597 (724)
...+. .....+|
T Consensus 195 ~~~s~~~~l~~~A 207 (214)
T PF09986_consen 195 KKASKEPKLKDMA 207 (214)
T ss_pred CCCCCcHHHHHHH
Confidence 43332 3444443
No 323
>KOG1464|consensus
Probab=95.90 E-value=1.2 Score=39.84 Aligned_cols=101 Identities=9% Similarity=0.049 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhcc------------HhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHH-
Q psy6603 174 LLYQSMVIQDSGDLEEAVKHLDRFKEQIHD------------KLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTL- 240 (724)
Q Consensus 174 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~- 240 (724)
-..+|.+|+..|+|.+-.+.+++....+.. -..++..-..+|..+.+-.+-...|++++.....-|.
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345677888888877777776665543321 1234445566777777777778888888887543332
Q ss_pred -HHHHHH----HH-hccCChHHHHHHHHHHHHhCCCCCcc
Q psy6603 241 -YYNKLV----EA-KQLTNNDDIFQLLTHYISKYPKATVP 274 (724)
Q Consensus 241 -~~~~l~----~~-~~~~~~~~a~~~~~~~~~~~~~~~~~ 274 (724)
..-.+- .. ++.|.+++|-.-|-++.+.+..+..+
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGsp 267 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSP 267 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCc
Confidence 211111 12 34578888887777777776665444
No 324
>KOG3807|consensus
Probab=95.87 E-value=0.53 Score=43.36 Aligned_cols=116 Identities=11% Similarity=0.065 Sum_probs=77.4
Q ss_pred hhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhh
Q psy6603 529 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG 608 (724)
Q Consensus 529 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 608 (724)
-....+..+..+-++....+++++|....++..++.- ...-..+|.+.|+++++...... +-..-....|.
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~y----r~sqq~qh~~~--- 261 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIY----RQSQQCQHQSP--- 261 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHH----hhHHHHhhhcc---
Confidence 3344555667777888889999999999988887753 33446788888998887543221 11111111111
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHh
Q psy6603 609 YREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFS 656 (724)
Q Consensus 609 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 656 (724)
..+.+.+.+-+...|+...||.|-.++|+..||++.++.+.+.++
T Consensus 262 ---~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 262 ---QHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred ---chhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 122233334444677778999999999999999999999888766
No 325
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.82 E-value=0.014 Score=50.28 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=56.1
Q ss_pred hHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccH
Q psy6603 530 LTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 530 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 590 (724)
....+.++.+.|.+.|.+++.+-|.....|+.+|....+.|+++.|...|++.++++|++.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4556778999999999999999999999999999999999999999999999999999875
No 326
>KOG0128|consensus
Probab=95.75 E-value=3.3 Score=43.75 Aligned_cols=443 Identities=12% Similarity=0.061 Sum_probs=217.9
Q ss_pred hcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH---cCCHHHHH
Q psy6603 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL---LHDFDMAC 150 (724)
Q Consensus 74 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~ 150 (724)
..|.-++=+..++.-+.+++.+...+..|..++...|++++-...-.++.++.|..+..|.....-... .+.-.++.
T Consensus 91 ~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~ 170 (881)
T KOG0128|consen 91 NEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVE 170 (881)
T ss_pred ccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHH
Confidence 344555667777777778888888888888899999999888888888888888888888777654433 35555566
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH-------hhHHHHHHHHHHHcCChHH
Q psy6603 151 NILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK-------LTVEETYGALKLKLGQYNE 223 (724)
Q Consensus 151 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~ 223 (724)
..|++++.....-|. +..........+..+...++++.-...|.+++..-... ...+...-..+...-..++
T Consensus 171 ~~~ekal~dy~~v~i-w~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~q 249 (881)
T KOG0128|consen 171 ELFEKALGDYNSVPI-WEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQ 249 (881)
T ss_pred HHHHHHhcccccchH-HHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHH
Confidence 555554443311111 11111222222333344567777777787777643221 1122222222332222233
Q ss_pred HHHHHHHHHHHcCCcHHH-HHHHHHHhc-------cCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHH
Q psy6603 224 AMKHYESLIERNQENTLY-YNKLVEAKQ-------LTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYL 295 (724)
Q Consensus 224 A~~~~~~~~~~~p~~~~~-~~~l~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (724)
-+.++...+... -+.++ ...+....+ ..+++.+..-
T Consensus 250 v~a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~----------------------------------- 293 (881)
T KOG0128|consen 250 VIALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKN----------------------------------- 293 (881)
T ss_pred HHHHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHH-----------------------------------
Confidence 333333333322 11100 000000000 0011111110
Q ss_pred HhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHH
Q psy6603 296 RHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKAL 375 (724)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 375 (724)
.......+.+.+ ...+.....| ......-...|+...-.
T Consensus 294 ---------------------------l~~~~~~~e~~~------------q~~~~~~q~~--~~yidfe~~~G~p~ri~ 332 (881)
T KOG0128|consen 294 ---------------------------LAKILFKFERLV------------QKEPIKDQEW--MSYIDFEKKSGDPVRIQ 332 (881)
T ss_pred ---------------------------HHHHHHHHHHHh------------hhhHHHHHHH--HHHHHHHHhcCCchHHH
Confidence 111111122211 1222222222 24445555678887777
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCH-HHHHHHHHHhhhcc
Q psy6603 376 NYINAAIDHTPTLIELFVTKGRIYKH-AGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLI-KEAEETCSKFTREG 453 (724)
Q Consensus 376 ~~~~~~l~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~~~~~~ 453 (724)
..+++++...+.+...|...+...-. ++-.+.+...+.+++...|-...++...-..+-+.+.. ..=...+.+.+...
T Consensus 333 l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~ 412 (881)
T KOG0128|consen 333 LIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT 412 (881)
T ss_pred HHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH
Confidence 88888888888888888877755432 33344445555556665554333332211122222211 11111222222110
Q ss_pred cCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhh
Q psy6603 454 VSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLN 533 (724)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 533 (724)
.. + ++.........++...+..+ .. -...|..|...+...-.... ......+-..|.+..
T Consensus 413 ~~----l--------~~~~~~~rr~~~~~~~s~~~-s~------lr~~F~~A~~eLt~~~~~~~-Dt~~~~~q~wA~~E~ 472 (881)
T KOG0128|consen 413 VE----L--------HNDYLAYRRRCTNIIDSQDY-SS------LRAAFNHAWEELTELYGDQL-DTRTEVLQLWAQVEA 472 (881)
T ss_pred HH----H--------HHHHHHHHHhhcccchhhhH-HH------HHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHH
Confidence 00 0 00001111111222111110 00 01335556655555333211 122345555565555
Q ss_pred h-cCChHHHHHHHHHhhhcCCCccc-hHHHHHHHHhccccHHHHHHHHHHHhhh--ccccH-HHHHHHHHHHHHhhhHhh
Q psy6603 534 C-LGRKEEAYEYVRRGLRNDLKSHV-CWHVYGLLQRSDKKYDEAIKCYRNALKW--EHDNI-QIMRDLSLLQIQMRDLEG 608 (724)
Q Consensus 534 ~-~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~-~~~~~l~~~~~~~~~~~~ 608 (724)
. +++.+.|..+.+..+...-.+.. .|+....+-...|+...|...+++++.. +|++. .++..+-......|.++.
T Consensus 473 sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~ 552 (881)
T KOG0128|consen 473 SLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLES 552 (881)
T ss_pred HHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHH
Confidence 4 57888899998888776655555 7888888888889999999988888873 33322 344444444445566655
Q ss_pred HHHHHH
Q psy6603 609 YREGVS 614 (724)
Q Consensus 609 a~~~~~ 614 (724)
+.....
T Consensus 553 ~~~~~~ 558 (881)
T KOG0128|consen 553 FDLCPE 558 (881)
T ss_pred HhhhHH
Confidence 444333
No 327
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.73 E-value=4.4 Score=44.98 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=91.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc----C---CHHHHHHHHHHHhhhhccHhhHH
Q psy6603 136 FAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS----G---DLEEAVKHLDRFKEQIHDKLTVE 208 (724)
Q Consensus 136 la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----g---~~~~A~~~~~~~~~~~p~~~~~~ 208 (724)
.-.++...+.|+.|+..|.+....++... +-.++.+..|..+..+ | .+++|+..|++... .|..|--+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 555 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRK----EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEY 555 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcc----cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHH
Confidence 34667778889999998888777774433 3567778887776642 3 47788888877543 56667778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hcc-----CChHHHHHHHHHHHHhCCCCC
Q psy6603 209 ETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQL-----TNNDDIFQLLTHYISKYPKAT 272 (724)
Q Consensus 209 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~-----~~~~~a~~~~~~~~~~~~~~~ 272 (724)
...|.+|.++|+++|-+++|.-+++..|+.|..-..-..+ +++ .+...+....--++..-|...
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 8899999999999999999999999999988644333333 221 223344444445555556553
No 328
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.66 E-value=0.021 Score=32.65 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=13.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q psy6603 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEH 93 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~p 93 (724)
+..+|.++...|++++|+..|+++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444444444444444444444433
No 329
>KOG3364|consensus
Probab=95.60 E-value=0.1 Score=40.96 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=62.1
Q ss_pred chhHHHHhhhhHhhhcCC---hHHHHHHHHHhhh-cCCCccc-hHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHH
Q psy6603 520 EHGETLAMKGLTLNCLGR---KEEAYEYVRRGLR-NDLKSHV-CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 594 (724)
Q Consensus 520 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~-~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 594 (724)
......+++++++.+..+ ..+.+.+++..++ -.|.... ..+.++..+.+.|+|++++.+.+..++..|+|.++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 345578899999988654 5578889999987 4444433 8889999999999999999999999999999988765
Q ss_pred H
Q psy6603 595 D 595 (724)
Q Consensus 595 ~ 595 (724)
.
T Consensus 110 L 110 (149)
T KOG3364|consen 110 L 110 (149)
T ss_pred H
Confidence 3
No 330
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.55 E-value=4.2 Score=43.55 Aligned_cols=275 Identities=13% Similarity=0.043 Sum_probs=147.8
Q ss_pred hchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----hH
Q psy6603 315 SNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPT-----LI 389 (724)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-----~~ 389 (724)
....+.+.++.++......+...... ..........-..|.+....|++++|++..+.++..-|. ..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~--------~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHS--------RQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCccc--------chhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhh
Confidence 33445566777777777776542111 111222222335567777899999999999999988775 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc------chhhhhhHHHHHHHcCCHH--HHHHHHHHhhhcccCccCChh
Q psy6603 390 ELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA------DRYINSKCAKYMLRANLIK--EAEETCSKFTREGVSAMENLN 461 (724)
Q Consensus 390 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~ 461 (724)
.+....|.+..-.|++++|..+...+.+.... ..++....+.++...|+.. +....+...-...-..... +
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~-~ 576 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR-H 576 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc-c
Confidence 56778899999999999999999998887332 1333444567777788332 2222332222110000000 0
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchh-HHHHhhhhHhhhcCChHH
Q psy6603 462 EMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHG-ETLAMKGLTLNCLGRKEE 540 (724)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 540 (724)
.. .+.....+..++.+ ++.+.. ++-..++.......+|... -++++++.+....|+.++
T Consensus 577 ~f-~~~~r~~ll~~~~r---~~~~~~----------------ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~ 636 (894)
T COG2909 577 EF-LVRIRAQLLRAWLR---LDLAEA----------------EARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK 636 (894)
T ss_pred hh-HHHHHHHHHHHHHH---HhhhhH----------------HhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH
Confidence 00 00011111222222 222222 1111112211211223322 244689999999999999
Q ss_pred HHHHHHHhhhcCCCc--cchHH-----HHHHHHhccccHHHHHHHHHHHhhhcccc----HHHHHHHHHHHHHhhhHhhH
Q psy6603 541 AYEYVRRGLRNDLKS--HVCWH-----VYGLLQRSDKKYDEAIKCYRNALKWEHDN----IQIMRDLSLLQIQMRDLEGY 609 (724)
Q Consensus 541 A~~~~~~al~~~p~~--~~~~~-----~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~a 609 (724)
|.........+-..+ ...|. .........|+..+|.....+...-+--+ ...+.++.......|-...+
T Consensus 637 A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~ea 716 (894)
T COG2909 637 ALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEA 716 (894)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHH
Confidence 999999877663333 22222 12244456899999999888843311110 12223344444555555555
Q ss_pred HHHHHHHHh
Q psy6603 610 REGVSAMEN 618 (724)
Q Consensus 610 ~~~~~~~~~ 618 (724)
..+...+.+
T Consensus 717 e~al~~l~~ 725 (894)
T COG2909 717 ELALDELAS 725 (894)
T ss_pred HHHHHHHhh
Confidence 555554443
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.49 E-value=4.4 Score=43.40 Aligned_cols=167 Identities=13% Similarity=0.029 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-----chhHHHH
Q psy6603 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ-IMRDLSLLQIQMRDLEGYRETRYQLFMLRPT-----QRASWIG 135 (724)
Q Consensus 62 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~ 135 (724)
...+..-+.-+...|...+|+...-.|- +|.-.. .....+.-....++..-- ...++.-|. +|.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~--d~~~aa~lle~~~~~L~~~~~lsll----~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAG--DPEMAADLLEQLEWQLFNGSELSLL----LAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCC--CHHHHHHHHHhhhhhhhcccchHHH----HHHHHhCCHHHHhhCchHHHH
Confidence 4445555666667777777776544331 222211 122222223333332222 222223332 4455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhccCCC--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH-----hhHH
Q psy6603 136 FAMAYHLLHDFDMACNILEAFRKTQQVTNS--YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK-----LTVE 208 (724)
Q Consensus 136 la~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~ 208 (724)
.+.......++.+|..++.++....+.... ......+..-..|.+....|++++|++..+.++..-|.+ ..+.
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 778888899999999999988777644211 223344555667888888999999999999998887765 3366
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q psy6603 209 ETYGALKLKLGQYNEAMKHYESLIER 234 (724)
Q Consensus 209 ~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (724)
..+|.+..-.|++++|......+.+.
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 77888888889999988887777665
No 332
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.43 E-value=0.03 Score=48.31 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=33.7
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q psy6603 38 LNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN 95 (724)
Q Consensus 38 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~ 95 (724)
....|+.+.|.+.+.+++.+.|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3445555555566666666555555556666665555566666666666655555554
No 333
>KOG2422|consensus
Probab=95.28 E-value=0.89 Score=45.53 Aligned_cols=142 Identities=15% Similarity=0.111 Sum_probs=99.3
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhh---------------------cCCCccc---hHHHHHHHHhccccH
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR---------------------NDLKSHV---CWHVYGLLQRSDKKY 572 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------~~p~~~~---~~~~l~~~~~~~~~~ 572 (724)
.+|-+.+.+..++.+...+|+.+-|....++++= ..|.|-. +++.....+.+.|-+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 5678888999999999999998888887777762 1222322 445556677789999
Q ss_pred HHHHHHHHHHhhhccc-cHHHHHHHHHHHH-HhhhHhhHHHHHHHHHhhhhhh--hhh-hhhhHHHHHHHhCC---hhHH
Q psy6603 573 DEAIKCYRNALKWEHD-NIQIMRDLSLLQI-QMRDLEGYREGVSAMENLNEMQ--CMW-FQTECALAYQRLGR---WGDT 644 (724)
Q Consensus 573 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~--~~~-~~~~la~~~~~~g~---~~~A 644 (724)
..|.++.+-.++++|. +|-+...+..+|. ...+|+=.++.++.....+.-. +.| +...+|..|..... ...|
T Consensus 359 rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa 438 (665)
T KOG2422|consen 359 RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSA 438 (665)
T ss_pred HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHH
Confidence 9999999999999998 8866666555554 4566766666666654444322 222 33556666665554 5678
Q ss_pred HHHHHHHHHHHhhh
Q psy6603 645 LKKCHEVDRHFSEI 658 (724)
Q Consensus 645 ~~~~~~~~~~~~~~ 658 (724)
...+.+++++++..
T Consensus 439 ~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 439 LNALLQALKHHPLV 452 (665)
T ss_pred HHHHHHHHHhCcHH
Confidence 88888888887743
No 334
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.27 E-value=0.26 Score=43.95 Aligned_cols=92 Identities=22% Similarity=0.288 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHH-------HHHHHHHHhhhhc------cHhhHHHH
Q psy6603 144 HDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEE-------AVKHLDRFKEQIH------DKLTVEET 210 (724)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~-------A~~~~~~~~~~~p------~~~~~~~~ 210 (724)
..+++|+..|.-++-............+.+++.+|.+|...|+.+. |++.|.+++.... +...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 3445555544444333322222223466788888889988888554 4444555444321 22457788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHc
Q psy6603 211 YGALKLKLGQYNEAMKHYESLIERN 235 (724)
Q Consensus 211 la~~~~~~g~~~~A~~~~~~~~~~~ 235 (724)
+|.+..+.|++++|...|.+++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 8999999999999999999988763
No 335
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.81 Score=46.05 Aligned_cols=102 Identities=13% Similarity=-0.042 Sum_probs=54.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHH-HHhhCCCcHHHHHHH------HHHHH
Q psy6603 35 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRN-ALKWEHDNIQIMRDL------SLLQI 107 (724)
Q Consensus 35 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-a~~~~p~~~~~~~~l------a~~~~ 107 (724)
...+...+....+.-.+..++..+|++..+...+|......|....+...+.. +....|.+......+ +....
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK 153 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence 44455555555566666666666666666666665555555555444444443 555555554433333 55555
Q ss_pred HhcchHHHHHHHHHHHHhCCCchhHHHHH
Q psy6603 108 QMRDLEGYRETRYQLFMLRPTQRASWIGF 136 (724)
Q Consensus 108 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 136 (724)
.+|+..++.....++....|.++.....+
T Consensus 154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 154 LLGRTAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 55555555555556666655554444333
No 336
>KOG3807|consensus
Probab=95.14 E-value=2.7 Score=38.95 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL 418 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 418 (724)
.+.+...+..+..+-++....+++++|....++..++.-- .--..+|.+.++++++.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 4455566678888888999999999999999998887543 33467888888888764
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.89 E-value=0.04 Score=33.91 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=12.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhh
Q psy6603 559 WHVYGLLQRSDKKYDEAIKCYRNALK 584 (724)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~al~ 584 (724)
+.++|.+|...|++++|..++++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 44444555555555555555554444
No 338
>KOG3364|consensus
Probab=94.73 E-value=1.1 Score=35.49 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhH
Q psy6603 170 HSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTV 207 (724)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 207 (724)
.-+..++++..+.+.++|+.++.+.+..++..|++..+
T Consensus 70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34455555556666666666666666666655555544
No 339
>KOG1310|consensus
Probab=94.43 E-value=0.17 Score=49.64 Aligned_cols=95 Identities=12% Similarity=-0.065 Sum_probs=56.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhc---CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy6603 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD---KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMR 110 (724)
Q Consensus 34 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 110 (724)
-|.-.+..+....|+..|.+++...|....++...+.++++. |+.-.|+.....+++++|....+++.|+.++.+++
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT 459 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence 333333444555666666666666666666666665555542 34455556666666666666666666666666666
Q ss_pred chHHHHHHHHHHHHhCCC
Q psy6603 111 DLEGYRETRYQLFMLRPT 128 (724)
Q Consensus 111 ~~~~A~~~~~~~l~~~p~ 128 (724)
++.+|+++...+....|.
T Consensus 460 r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFPT 477 (758)
T ss_pred hHHHhhhhHHHHhhcCch
Confidence 666666666555555553
No 340
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.42 E-value=0.12 Score=46.83 Aligned_cols=77 Identities=6% Similarity=-0.029 Sum_probs=38.4
Q ss_pred CCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHH-HHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy6603 24 YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHV-YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 100 (724)
Q Consensus 24 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 100 (724)
.|+++..|...+....+.|.+.+--.+|.+++..+|.+.+.|.. -+.-+...++++.+...|.++++.+|++|.+|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34444455444444444455555555555555555555555543 233334445555555555555555555555443
No 341
>KOG0276|consensus
Probab=94.39 E-value=0.27 Score=49.18 Aligned_cols=101 Identities=22% Similarity=0.235 Sum_probs=75.5
Q ss_pred hHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhH
Q psy6603 530 LTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGY 609 (724)
Q Consensus 530 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 609 (724)
.+..+.|+++.|.++..++ ++..-|..||.+....|++..|.++|.++.... .|-.++...|+-+..
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLG--------SLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchh--------hhhhhhhhcCChhHH
Confidence 3456789999888876544 566789999999999999999999999986643 455566667776655
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHH
Q psy6603 610 REGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCH 649 (724)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 649 (724)
...-....+......+++ +|...|+++++++++.
T Consensus 712 ~~la~~~~~~g~~N~AF~------~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 712 AVLASLAKKQGKNNLAFL------AYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHHhhcccchHHH------HHHHcCCHHHHHHHHH
Confidence 555555555555555553 8999999999998775
No 342
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.15 E-value=0.097 Score=47.51 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=67.2
Q ss_pred HHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHH-HHHHHHHhcchHHHHHHHHHHHHhCCCchhH
Q psy6603 54 GLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD-LSLLQIQMRDLEGYRETRYQLFMLRPTQRAS 132 (724)
Q Consensus 54 ~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 132 (724)
+....|+++..|...+......|-+.+--..|.+++..+|.+++.|.. -+.-+...++++.+...|.+.++.+|++|..
T Consensus 99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 334457788888888888788888888888888999999998888776 4445667788888899999999999888888
Q ss_pred HHHHHH
Q psy6603 133 WIGFAM 138 (724)
Q Consensus 133 ~~~la~ 138 (724)
|...-+
T Consensus 179 w~eyfr 184 (435)
T COG5191 179 WIEYFR 184 (435)
T ss_pred HHHHHH
Confidence 776543
No 343
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.08 E-value=9.6 Score=40.85 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=13.2
Q ss_pred HHHHHcCCHHHHHHHHHH
Q psy6603 179 MVIQDSGDLEEAVKHLDR 196 (724)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~ 196 (724)
.++.-.|+++.|++++-+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 467778888888888776
No 344
>KOG2422|consensus
Probab=93.95 E-value=5.9 Score=40.10 Aligned_cols=115 Identities=11% Similarity=-0.060 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHHc------------CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh------------------
Q psy6603 42 GRKEEAYEYVRRGLRN------------DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW------------------ 91 (724)
Q Consensus 42 g~~~~A~~~~~~~l~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~------------------ 91 (724)
.-|++|...|.-++.. .|-+...+..++.+...+|+.+-|.....+++=.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3455666666555432 3444555666677777777766655555544311
Q ss_pred ---CCCcHH---HHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-chhHHHHHHHHHH-HcCCHHHHHHHHHHH
Q psy6603 92 ---EHDNIQ---IMRDLSLLQIQMRDLEGYRETRYQLFMLRPT-QRASWIGFAMAYH-LLHDFDMACNILEAF 156 (724)
Q Consensus 92 ---~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~ 156 (724)
.|.|-. +++.......+.|-+..|.+..+-++.++|. +|.+...+...|. +..+|+--++.++..
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 123322 3334445556788999999999999999998 8877666666554 445666666555544
No 345
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.85 E-value=1.6 Score=41.89 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=84.0
Q ss_pred HHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHH--HhcCCCCCchhH-------HHHhhhhHhhhcCChHHHH
Q psy6603 472 CALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQ--ILTNPKYAEHGE-------TLAMKGLTLNCLGRKEEAY 542 (724)
Q Consensus 472 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~ 542 (724)
-+...+++++|..|.. +|..|++++.. ....|..|...+ +-..+..||.++++.+-|+
T Consensus 182 das~~yrqk~ya~Aa~-------------rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlAL 248 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAG-------------RFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLAL 248 (569)
T ss_pred HHHHHHhhHHHHHHHH-------------HHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHH
Confidence 4556667777766654 46677777754 333334443222 3456888999999999999
Q ss_pred HHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhh---hccccHHHHHHHHHHHHH
Q psy6603 543 EYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK---WEHDNIQIMRDLSLLQIQ 602 (724)
Q Consensus 543 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~ 602 (724)
....+.+.++|....-+...+.++..+.+|.+|...+.-+.= ++..+..-...+..+|++
T Consensus 249 nh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWq 311 (569)
T PF15015_consen 249 NHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ 311 (569)
T ss_pred HHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence 999999999999999999999999999999999887765543 333333444445555544
No 346
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=4.1 Score=41.33 Aligned_cols=140 Identities=14% Similarity=0.009 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhCCCcHHHHHH--HHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHH-H
Q psy6603 81 AIKCYRNALKWEHDNIQIMRD--LSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAF-R 157 (724)
Q Consensus 81 A~~~~~~a~~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~ 157 (724)
++..+...+.++|.++..+.. +...+...+....+.......+..+|++..+..+++.+....|....+...+... .
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444555555554222 3444455566656666666666666666666666666666665555555444442 2
Q ss_pred HhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCCh
Q psy6603 158 KTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQY 221 (724)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 221 (724)
...+.+-.... +...++.++......|+..++...+.++....|.++.+...+.........+
T Consensus 130 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~ 192 (620)
T COG3914 130 WLSPDNAEFLG-HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSW 192 (620)
T ss_pred hcCcchHHHHh-hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccc
Confidence 22211110000 1111222577777788888999999999999998877666655554444333
No 347
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.72 E-value=0.86 Score=41.41 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=50.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHH
Q psy6603 68 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGF 136 (724)
Q Consensus 68 lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 136 (724)
+=..+...++++.|..+-++.+.++|.++.-+...|.+|.+.|.+..|+..+...++.-|+.+.+-...
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 344556677777777777777777777777777777777777777777777777777777776654443
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.69 E-value=5.9 Score=40.12 Aligned_cols=99 Identities=10% Similarity=0.021 Sum_probs=46.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHH
Q psy6603 40 CLGRKEEAYEYVRRGLRNDLKS-HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRET 118 (724)
Q Consensus 40 ~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 118 (724)
-.|+++++....... +.-|.- ..-...++..+.+.|..+.|+..- .++...+.|+ .+.|+++.|.+.
T Consensus 273 ~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHH
Confidence 356666665555411 111221 222444556666666666665432 2333444433 355666666543
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6603 119 RYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEA 155 (724)
Q Consensus 119 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 155 (724)
. ...+++..|..+|......|+++-|..+|.+
T Consensus 341 a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 341 A-----KELDDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp C-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred H-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3 1223556677777777777777777666554
No 349
>KOG2581|consensus
Probab=93.57 E-value=6.9 Score=37.71 Aligned_cols=130 Identities=10% Similarity=0.070 Sum_probs=76.9
Q ss_pred HhcchHHHHHHHHHHHHhC-CC--------chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q psy6603 108 QMRDLEGYRETRYQLFMLR-PT--------QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQS 178 (724)
Q Consensus 108 ~~~~~~~A~~~~~~~l~~~-p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 178 (724)
...++.+|.++-+..+..- -. ....|+.+..++...|+...-...+...++......+ ....+.....+-
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd-~e~qavLiN~LL 216 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD-EEGQAVLINLLL 216 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc-chhHHHHHHHHH
Confidence 3456666665554443211 00 2345666667777777766665555555554433322 123444555566
Q ss_pred HHHHHcCCHHHHHHHHHHHhh--hhc--cHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCc
Q psy6603 179 MVIQDSGDLEEAVKHLDRFKE--QIH--DKLTVEETYGALKLKLGQYNEAMKHYESLIERNQEN 238 (724)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~--~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 238 (724)
..|...+.|+.|-....+..- ... ......+.+|.+..-+++|..|.++|-+++...|.+
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 677777777777777666541 111 224456677888888888888888888888887764
No 350
>KOG2581|consensus
Probab=93.40 E-value=7.9 Score=37.34 Aligned_cols=190 Identities=17% Similarity=0.080 Sum_probs=115.2
Q ss_pred HhhcCCHHHHHHHHHHHHhh----CCC-----cHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-----C-CchhHHHHH
Q psy6603 72 QRSDKKYDEAIKCYRNALKW----EHD-----NIQIMRDLSLLQIQMRDLEGYRETRYQLFMLR-----P-TQRASWIGF 136 (724)
Q Consensus 72 ~~~~g~~~~A~~~~~~a~~~----~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p-~~~~~~~~l 136 (724)
+..++++.+|..+-+..+.. +.. ....|+.+..++...|+...-...+...+... . ........+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 34468899998877665532 111 23467788888888888777666665544322 1 133455566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhh------HHHH
Q psy6603 137 AMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLT------VEET 210 (724)
Q Consensus 137 a~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~ 210 (724)
-+.|...+.|+.|.....+.. .+... ....++..++++|.+..-+++|..|.+++-+++...|.+.. +...
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~--~pe~~-snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~ 292 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSV--YPEAA-SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKL 292 (493)
T ss_pred HHHHhhhHHHHHHHHHhhccc--Ccccc-ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHH
Confidence 788888899999976544321 11111 23367888899999999999999999999999999997532 1222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q psy6603 211 YGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISK 267 (724)
Q Consensus 211 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 267 (724)
+..+-.-+|.+.+-...-+..++ .....++.|....+.|+...-...+++....
T Consensus 293 ~ivv~ll~geiPers~F~Qp~~~---ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~ 346 (493)
T KOG2581|consen 293 MIVVELLLGEIPERSVFRQPGMR---KSLRPYFKLTQAVRLGDLKKFNETLEQFKDK 346 (493)
T ss_pred HHHHHHHcCCCcchhhhcCccHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22333345555542221111111 1223566666666667665555544444433
No 351
>KOG1839|consensus
Probab=93.36 E-value=1.2 Score=49.68 Aligned_cols=169 Identities=14% Similarity=0.127 Sum_probs=108.3
Q ss_pred HHHHHHHHhcCCHHHHHH------HHH-HHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------Cccch
Q psy6603 359 HYLAQHYDHLGDTMKALN------YIN-AAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL--------DTADR 423 (724)
Q Consensus 359 ~~la~~~~~~~~~~~A~~------~~~-~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~~~~~ 423 (724)
...+......|.+.+|.+ ++. ..-.+.|.....+..++.++...|+.++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 345555555677776666 555 333456888889999999999999999999888776654 22333
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchH
Q psy6603 424 YINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYK 503 (724)
Q Consensus 424 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 503 (724)
..+..++...+..++...|...+.++...
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l--------------------------------------------------- 1044 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKL--------------------------------------------------- 1044 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHh---------------------------------------------------
Confidence 44445555555555555555544444320
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCC-----C---ccchHHHHHHHHhccccHHHH
Q psy6603 504 NGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDL-----K---SHVCWHVYGLLQRSDKKYDEA 575 (724)
Q Consensus 504 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~---~~~~~~~l~~~~~~~~~~~~A 575 (724)
..+...+.+|.......+++.++...++++.|+++.+.|+..+. . ....+..++.++...+++..|
T Consensus 1045 ------~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~a 1118 (1236)
T KOG1839|consen 1045 ------KLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNA 1118 (1236)
T ss_pred ------hccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHH
Confidence 00222335677777778888888888999999999998887522 1 222556666777677776666
Q ss_pred HHHHHHHhh
Q psy6603 576 IKCYRNALK 584 (724)
Q Consensus 576 ~~~~~~al~ 584 (724)
....+....
T Consensus 1119 l~~ek~t~~ 1127 (1236)
T KOG1839|consen 1119 LEHEKVTYG 1127 (1236)
T ss_pred HHHHhhHHH
Confidence 666665554
No 352
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.25 E-value=0.13 Score=31.54 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=25.9
Q ss_pred HHHHhhhhHhhhcCChHHHHHHHHHhhhc
Q psy6603 523 ETLAMKGLTLNCLGRKEEAYEYVRRGLRN 551 (724)
Q Consensus 523 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 551 (724)
.++.++|.+|...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 47899999999999999999999999875
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.15 E-value=0.99 Score=31.85 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=26.1
Q ss_pred HHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHH
Q psy6603 563 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 598 (724)
Q Consensus 563 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 598 (724)
|.-++..++.++|+..++++++..++.+..+..||.
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~ 48 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGY 48 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 433456777888888888888887777776666665
No 354
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.01 E-value=3.3 Score=38.32 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Q psy6603 170 HSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAK 249 (724)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 249 (724)
...++..++..+...|+++.+++.+++.+..+|-+...+..+..+|...|+...|+..|+++-.. +..-+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~----------~~edl 221 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT----------LAEEL 221 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH----------hhhhc
Confidence 45677788889999999999999999999999999999999999999999999999999988764 11112
Q ss_pred ccCChHHHHHHHHHHHHhCCC
Q psy6603 250 QLTNNDDIFQLLTHYISKYPK 270 (724)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~ 270 (724)
...--.++...+.+++...|.
T Consensus 222 gi~P~~~~~~~y~~~~~~~~~ 242 (280)
T COG3629 222 GIDPAPELRALYEEILRQDPL 242 (280)
T ss_pred CCCccHHHHHHHHHHhccccc
Confidence 223344555556666544443
No 355
>KOG1839|consensus
Probab=92.97 E-value=2 Score=47.94 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHHhccCCHHHHHH------HHHHHH-HcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh--------
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYE------YVRRGL-RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW-------- 91 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~------~~~~~l-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~-------- 91 (724)
...-....|......|.+.+|.+ ++.... ...|....++..++.++...|++++|+..-.++.-+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 34555667777778888888877 555332 457888889999999999999999999988877644
Q ss_pred CCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q psy6603 92 EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFML--------RPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVT 163 (724)
Q Consensus 92 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 163 (724)
.|+....+..++......++...|...+.++..+ .|.-.....++..++...++++.|+.+++.+......-
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 2445567888888888888999999888877754 34444566778888888899999999998877643211
Q ss_pred CC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6603 164 NS-YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFK 198 (724)
Q Consensus 164 p~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 198 (724)
-. ........+..++..+...+++..|+...+...
T Consensus 1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 11 122344455555666666666665555554443
No 356
>KOG0529|consensus
Probab=92.78 E-value=6 Score=38.33 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=95.2
Q ss_pred hHHHHHHHhhCCCCCCChHHHHHHHHHHHhc------------cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcC-
Q psy6603 10 NGLKFAKQILTNPKYAEHGETLAMKGLTLNC------------LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK- 76 (724)
Q Consensus 10 ~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~------------~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g- 76 (724)
++++.=.+++. .+|+...+|...-.++.. ..-.++-+.+...++..+|++..+|+.+..++.+.+
T Consensus 47 e~l~lt~~ll~--~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~ 124 (421)
T KOG0529|consen 47 EHLELTSELLE--KNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH 124 (421)
T ss_pred HHHHHHHHHHh--hCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence 45566666777 677776666543333222 124556677888899999999999999999998766
Q ss_pred -CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc----chHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy6603 77 -KYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMR----DLEGYRETRYQLFMLRPTQRASWIGFAMAYH 141 (724)
Q Consensus 77 -~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 141 (724)
++..=+...+++++.+|.|..+|...-.+..... ...+=+++..+++..++.+..+|.....++.
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 4688899999999999999887766544443322 3456677888999999999999988866554
No 357
>KOG2062|consensus
Probab=92.72 E-value=15 Score=38.66 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=35.7
Q ss_pred hhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHH
Q psy6603 9 KNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRG 54 (724)
Q Consensus 9 ~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 54 (724)
.+++...+.+.++..+|++..+-.....+|+..|+|++|+++.-.+
T Consensus 40 sd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~a 85 (929)
T KOG2062|consen 40 SDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRA 85 (929)
T ss_pred hhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456666777776677777777778888999999999999987766
No 358
>KOG1463|consensus
Probab=92.55 E-value=9.3 Score=35.93 Aligned_cols=189 Identities=10% Similarity=0.014 Sum_probs=112.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcc----Cccc--hhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHH
Q psy6603 393 VTKGRIYKHAGDVLEAYKWLDEAQSL----DTAD--RYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCM 466 (724)
Q Consensus 393 ~~l~~~~~~~g~~~~A~~~~~~a~~~----~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 466 (724)
..+..+|...++|.+|+......+.. +... ..+...-...+....+..+|...+..+.............. .
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQ--a 209 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQ--A 209 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHH--H
Confidence 46788899999999999877666543 3222 34455567888888999999888887765322211111111 1
Q ss_pred HHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHH-
Q psy6603 467 WFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYV- 545 (724)
Q Consensus 467 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~- 545 (724)
-...+-|..+....+|..|..+|-++...+-..++-.+|+. ++-.+-.|-...+..++--..+
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~----------------sLKYMlLcKIMln~~ddv~~lls 273 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALT----------------SLKYMLLCKIMLNLPDDVAALLS 273 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHH----------------HHHHHHHHHHHhcCHHHHHHHHh
Confidence 11222566666667777777776544322222222222222 2333333444456666544444
Q ss_pred -HHhhhcCCCccchHHHHHHHHhc--cccHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Q psy6603 546 -RRGLRNDLKSHVCWHVYGLLQRS--DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 602 (724)
Q Consensus 546 -~~al~~~p~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 602 (724)
+.+++.......+....+.++.+ +.+|+.|+..|+.=+..+| -+..++..+|-.
T Consensus 274 ~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd~ 330 (411)
T KOG1463|consen 274 AKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYDN 330 (411)
T ss_pred hHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHHH
Confidence 35566666666788878877764 6789999999998777554 566666655443
No 359
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.43 E-value=13 Score=37.24 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q psy6603 48 YEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFM 124 (724)
Q Consensus 48 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 124 (724)
..++.+++... .+..++..++.+|... ..++-...+++.++.+-++...-..|+..|.+ ++.+.+...|.+++.
T Consensus 86 eh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 86 EHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 33444444432 2244455555555544 34444455555555555555555555555544 555555555555543
No 360
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.40 E-value=0.46 Score=27.83 Aligned_cols=20 Identities=30% Similarity=0.202 Sum_probs=9.6
Q ss_pred HHHHHHHHhhcCCHHHHHHH
Q psy6603 65 WHVYGLLQRSDKKYDEAIKC 84 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~ 84 (724)
|+.+|..+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
No 361
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.32 E-value=0.26 Score=29.21 Aligned_cols=30 Identities=20% Similarity=0.476 Sum_probs=23.1
Q ss_pred chHHHHHHHHhccccHHHHHHHHHHHhhhc
Q psy6603 557 VCWHVYGLLQRSDKKYDEAIKCYRNALKWE 586 (724)
Q Consensus 557 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 586 (724)
.++..+|.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356778888888888888888888887753
No 362
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=9 Score=34.98 Aligned_cols=216 Identities=14% Similarity=0.038 Sum_probs=119.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHH
Q psy6603 428 KCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLK 507 (724)
Q Consensus 428 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~ 507 (724)
.+++-..+.+++++|+..|.+.+..+....+.....+.. ...+++.+|...|++..--+...... .+++.---.+..+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~-tvlel~~lyv~~g~~~~l~~~i~~sr-e~m~~ftk~k~~K 85 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEA-TVLELFKLYVSKGDYCSLGDTITSSR-EAMEDFTKPKITK 85 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHH-HHHHHHHHHHhcCCcchHHHHHHhhH-HHHHHhcchhHHH
Confidence 456666777778888888888777654433322222211 12347888888888764433222111 0111100112223
Q ss_pred HHHH-HhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCcc------chHHHHHHHHhccccHHHHHHHHH
Q psy6603 508 FAKQ-ILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH------VCWHVYGLLQRSDKKYDEAIKCYR 580 (724)
Q Consensus 508 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~ 580 (724)
+.+. +...|..|++ ++.-+..+...++.....- ..-..+..++.+.|.|.+|+....
T Consensus 86 iirtLiekf~~~~ds----------------l~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 86 IIRTLIEKFPYSSDS----------------LEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHHhcCCCCcc----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3333 3333333332 2222222222222111100 022346677888899999988877
Q ss_pred HHhh------hccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhh------hhhhhhhhhhHHHHHHHhCChhHHHHHH
Q psy6603 581 NALK------WEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLN------EMQCMWFQTECALAYQRLGRWGDTLKKC 648 (724)
Q Consensus 581 ~al~------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 648 (724)
..+. -.|+-.+++..=..+|....+...+...+..+.... |.-.+-....-|..++...+|.-|-.+|
T Consensus 150 ~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF 229 (421)
T COG5159 150 PLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYF 229 (421)
T ss_pred HHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHH
Confidence 7665 234445667777778888888888887777665443 2222222233345677888999999999
Q ss_pred HHHHHHHhhhhcc
Q psy6603 649 HEVDRHFSEIIED 661 (724)
Q Consensus 649 ~~~~~~~~~~~~~ 661 (724)
-++.+-|.....|
T Consensus 230 ~Ea~Egft~l~~d 242 (421)
T COG5159 230 IEALEGFTLLKMD 242 (421)
T ss_pred HHHHhccccccch
Confidence 9888888766665
No 363
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.16 E-value=0.21 Score=35.04 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=46.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHH---HHHhhcCCHHHHHHHHHHHHh
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYG---LLQRSDKKYDEAIKCYRNALK 90 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~a~~ 90 (724)
.....|.-++...+.++|+..++++++..++.+..+..+| .++...|+|.+.+.+-.+=++
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888899999999999999988888777666655 456778888888776554443
No 364
>KOG1310|consensus
Probab=92.09 E-value=0.9 Score=44.91 Aligned_cols=91 Identities=8% Similarity=-0.152 Sum_probs=72.3
Q ss_pred hhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhcc---ccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhH
Q psy6603 533 NCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD---KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGY 609 (724)
Q Consensus 533 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a 609 (724)
+..+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....++.++|....+++.|+.++..++.+.+|
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3345567788888888888888888888888877764 4556677777788888888888888888888888888888
Q ss_pred HHHHHHHHhhhhhh
Q psy6603 610 REGVSAMENLNEMQ 623 (724)
Q Consensus 610 ~~~~~~~~~~~~~~ 623 (724)
++....++...|.+
T Consensus 465 l~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 465 LSCHWALQMSFPTD 478 (758)
T ss_pred hhhHHHHhhcCchh
Confidence 88888888777755
No 365
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.96 E-value=1.8 Score=40.09 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC
Q psy6603 96 IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVT 163 (724)
Q Consensus 96 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 163 (724)
..++..++..+...|+++.+...+++.+..+|-+...|..+...|...|+...|+..|+++.+.....
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ed 220 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEE 220 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhh
Confidence 34677788899999999999999999999999999999999999999999999999999987765433
No 366
>KOG3783|consensus
Probab=91.94 E-value=15 Score=37.07 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=55.0
Q ss_pred chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------C-ChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHccCcc
Q psy6603 350 PASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHT------P-TLIELFVTKGRIYKHAGD-VLEAYKWLDEAQSLDTA 421 (724)
Q Consensus 350 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------p-~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~ 421 (724)
..+....-++.+|.++...|+...|..+|...++.. | -.|.+++.+|..+..+|. ..++..++.+|.....+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 344444567788888999999999999988777431 1 146788999999998888 89999999998886543
No 367
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.76 E-value=1.5 Score=37.84 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHc-CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhcchHHHH
Q psy6603 43 RKEEAYEYVRRGLRN-DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD----NIQIMRDLSLLQIQMRDLEGYR 116 (724)
Q Consensus 43 ~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~la~~~~~~~~~~~A~ 116 (724)
.-++|...|-++-.. .-+++...+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 346777777765432 2356777888888887 68999999999999998544 5889999999999999999884
No 368
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.74 E-value=11 Score=34.90 Aligned_cols=60 Identities=27% Similarity=0.223 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6603 355 LWVYHYLAQHYDHLGDTMKALNYINAAIDHTPT------LIELFVTKGRIYKHAGDVLEAYKWLDE 414 (724)
Q Consensus 355 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 414 (724)
..+...+|..|...|++++|+++|+.+...... ...+...+..|....|+.+..+.+.-+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 335557777777777777777777777543221 334555566666666666666554433
No 369
>KOG1920|consensus
Probab=91.69 E-value=15 Score=40.97 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=10.4
Q ss_pred Hhhcchhhhhhhhhhhh
Q psy6603 477 QRLGRWGDTLKKCHEVD 493 (724)
Q Consensus 477 ~~~g~~~~A~~~~~~~~ 493 (724)
..+++|+.|+..+.++.
T Consensus 891 ~~L~ry~~AL~hLs~~~ 907 (1265)
T KOG1920|consen 891 DYLKRYEDALSHLSECG 907 (1265)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 44567777766655554
No 370
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.59 E-value=16 Score=36.59 Aligned_cols=62 Identities=10% Similarity=0.135 Sum_probs=45.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHccCc
Q psy6603 361 LAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKH--------------------AGDVLEAYKWLDEAQSLDT 420 (724)
Q Consensus 361 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~a~~~~~ 420 (724)
+-..|....++.+|++.+...++.+..+..+.-.+..-+.. -.++.+++..|++.+..+.
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence 33456667899999999999988887776666555544443 4578888888988888766
Q ss_pred cc
Q psy6603 421 AD 422 (724)
Q Consensus 421 ~~ 422 (724)
.+
T Consensus 291 Gn 292 (711)
T COG1747 291 GN 292 (711)
T ss_pred Cc
Confidence 54
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.40 E-value=0.96 Score=34.13 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=30.1
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCc---------hhHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q psy6603 38 LNCLGRKEEAYEYVRRGLRNDLKS---------HVCWHVYGLLQRSDKKYDEAIKCYRNALKW 91 (724)
Q Consensus 38 ~~~~g~~~~A~~~~~~~l~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~ 91 (724)
..+.|++.+|++.+.+..+..... ..+...+|.+....|++++|+..+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345667777766666655432111 223445566666666666666666666654
No 372
>PF12854 PPR_1: PPR repeat
Probab=91.34 E-value=0.41 Score=27.68 Aligned_cols=29 Identities=21% Similarity=0.031 Sum_probs=20.9
Q ss_pred chhHHHHhhhhHhhhcCChHHHHHHHHHh
Q psy6603 520 EHGETLAMKGLTLNCLGRKEEAYEYVRRG 548 (724)
Q Consensus 520 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 548 (724)
.+..+|..+...+++.|+.++|.+.|+++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45557777777777777777777777653
No 373
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.23 E-value=0.67 Score=27.17 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHH--HHHHcCCCc
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVR--RGLRNDLKS 61 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~p~~ 61 (724)
+.++.+|..+...|++++|+..|+ -+...+|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 568889999999999999999944 776666653
No 374
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.94 E-value=0.31 Score=26.03 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=13.7
Q ss_pred HHHhhhhHhhhcCChHHHHHHHH
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVR 546 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~ 546 (724)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666665543
No 375
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.94 E-value=4.8 Score=38.18 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=54.0
Q ss_pred HHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Q psy6603 541 AYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 602 (724)
Q Consensus 541 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 602 (724)
|..+|.+|+.+.|.+...++.+|.+....|+.-.|+-+|-+++-.....+.+..+|..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998777778899999888777
No 376
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.89 E-value=1 Score=40.89 Aligned_cols=72 Identities=15% Similarity=-0.083 Sum_probs=62.2
Q ss_pred HHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHH
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 595 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 595 (724)
...++=..+.+.++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.+...++..|+++.+-.-
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 344555567788999999999999999999999989999999999999999999999999999998866543
No 377
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.82 E-value=0.39 Score=25.65 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=9.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q psy6603 392 FVTKGRIYKHAGDVLEAYKWL 412 (724)
Q Consensus 392 ~~~l~~~~~~~g~~~~A~~~~ 412 (724)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 334444444444444444443
No 378
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.79 E-value=5.8 Score=34.46 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=60.7
Q ss_pred hcCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHcCCHHH
Q psy6603 74 SDKKYDEAIKCYRNALKWE-HDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT----QRASWIGFAMAYHLLHDFDM 148 (724)
Q Consensus 74 ~~g~~~~A~~~~~~a~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~ 148 (724)
..-.-++|...|-++-... -+++...+.||..|. ..+.++++..+.+++++.+. +++.+..|+.++...|+++.
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3434567888777654422 246888899998886 78999999999999998754 58999999999999999999
Q ss_pred HH
Q psy6603 149 AC 150 (724)
Q Consensus 149 A~ 150 (724)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 85
No 379
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.75 E-value=2.5 Score=31.92 Aligned_cols=63 Identities=17% Similarity=0.138 Sum_probs=37.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhhccCCCC--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q psy6603 140 YHLLHDFDMACNILEAFRKTQQVTNSY--DFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIH 202 (724)
Q Consensus 140 ~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 202 (724)
..+.|++..|++.+.++.......... ......+++.+|.+....|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345677777776666655443222210 012344566677777777777777777777776543
No 380
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.74 E-value=0.58 Score=27.79 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q psy6603 64 CWHVYGLLQRSDKKYDEAIKCYRNALKW 91 (724)
Q Consensus 64 ~~~~lg~~~~~~g~~~~A~~~~~~a~~~ 91 (724)
++..+|.+....++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666666666666654
No 381
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=90.72 E-value=8.7 Score=36.03 Aligned_cols=193 Identities=10% Similarity=-0.031 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-hhhhhhHHHHHHHcCCHHHHHHHHHH
Q psy6603 370 DTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTAD-RYINSKCAKYMLRANLIKEAEETCSK 448 (724)
Q Consensus 370 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~ 448 (724)
--++|+.+-.-...+.|..|+++-.++.++....+.. -..+++. ......--..+...+-++++...+.+
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~---------AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~r 281 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRP---------ARFDADGEPVLLEDQDRSLWDRALIDEGLALLDR 281 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh---------hccCCCCCeeeccccchhhhhHHHHHHHHHHHHH
Confidence 3467888888888899999998887777765433211 1112211 11111111222333456777777777
Q ss_pred hhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhh
Q psy6603 449 FTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMK 528 (724)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 528 (724)
+..........+. -.++-++.... .-+.-++..-..+|+.+..-..+|. +-.|.
T Consensus 282 A~~~~~pGPYqlq--------AAIaa~HA~a~---------------~aedtDW~~I~aLYdaL~~~apSPv---V~LNR 335 (415)
T COG4941 282 ALASRRPGPYQLQ--------AAIAALHARAR---------------RAEDTDWPAIDALYDALEQAAPSPV---VTLNR 335 (415)
T ss_pred HHHcCCCChHHHH--------HHHHHHHHhhc---------------ccCCCChHHHHHHHHHHHHhCCCCe---EeehH
Confidence 7764332111111 00111111111 0111234444445555554333333 55666
Q ss_pred hhHhhhcCChHHHHHHHHHhhhc--CCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHH
Q psy6603 529 GLTLNCLGRKEEAYEYVRRGLRN--DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 597 (724)
Q Consensus 529 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 597 (724)
+....+..-.+.++...+-.... -......+-..|..+.++|+.++|...|++++.+.++..+..+-+.
T Consensus 336 AVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 336 AVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 76666666677777777665544 2233447777899999999999999999999999988876655443
No 382
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.73 E-value=5.4 Score=38.58 Aligned_cols=84 Identities=19% Similarity=0.139 Sum_probs=64.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhCC--------C-----c-----HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCch
Q psy6603 69 GLLQRSDKKYDEAIKCYRNALKWEH--------D-----N-----IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQR 130 (724)
Q Consensus 69 g~~~~~~g~~~~A~~~~~~a~~~~p--------~-----~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 130 (724)
|..++++|+|..|.--|..++++.. . + ..+-..+..||+.+++.+-|+....+.+..+|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4555666777777777766666521 1 1 11445688999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCHHHHHHH
Q psy6603 131 ASWIGFAMAYHLLHDFDMACNI 152 (724)
Q Consensus 131 ~~~~~la~~~~~~g~~~~A~~~ 152 (724)
..+...|.++..+.+|.+|.+-
T Consensus 263 rnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 383
>KOG4814|consensus
Probab=89.41 E-value=29 Score=35.98 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=80.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy6603 68 YGLLQRSDKKYDEAIKCYRNALKWEHDN------IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYH 141 (724)
Q Consensus 68 lg~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 141 (724)
-+.-.++..+|..+++.|...+..-|.+ ......++.||..+.+.+.|.++++++-+.+|.++-.......+..
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFL 439 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3566677899999999999999876654 4478889999999999999999999999999999988888888889
Q ss_pred HcCCHHHHHHHHHHHHHhh
Q psy6603 142 LLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~ 160 (724)
..|.-++|+.++.......
T Consensus 440 ~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HhcchHHHHHHHHHHHhhh
Confidence 9999999998887765554
No 384
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=89.15 E-value=18 Score=33.14 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHc
Q psy6603 359 HYLAQHYDHLGDTMKALNYINAAIDHTPT-LIELFVTKGRIYK-HAGDVLEAYKWLDEAQS 417 (724)
Q Consensus 359 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~ 417 (724)
..+|.+....|++++.+.++++++..+|. +.+-...++.+|. ..|....+...+.....
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 47889999999999999999999999876 3445555565553 23444445555544443
No 385
>PF12854 PPR_1: PPR repeat
Probab=87.99 E-value=1.4 Score=25.45 Aligned_cols=28 Identities=21% Similarity=0.074 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRR 53 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 53 (724)
.+..++..+...+.+.|+.++|.++|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4555666666666666666666666654
No 386
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.22 E-value=4 Score=37.35 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA 415 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 415 (724)
..+..|...|.+.+|+.+.++++..+|-+...+..+-.++...|+--.|.+.|++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44445555666666666666666666666666666666666666655555555443
No 387
>KOG0546|consensus
Probab=87.14 E-value=0.95 Score=42.47 Aligned_cols=129 Identities=15% Similarity=0.065 Sum_probs=90.1
Q ss_pred HHHHHHhhcchhhhhhhhhhhhhHhhhh--hchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhh
Q psy6603 472 CALAYQRLGRWGDTLKKCHEVDRKCYEH--KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL 549 (724)
Q Consensus 472 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 549 (724)
.+.-..+.++++.|..-+.+..+..-.. .+-.+... . ..+-.........+++.+-.+.+.+..|+..-..++
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~---~--~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQEN---R--IPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhccccccccccccc---c--cccccccccccccchHHhcccccCCCcceecccccc
Confidence 5666778888888877655443322210 00000000 0 000111123356678888899999999999888888
Q ss_pred hcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhh
Q psy6603 550 RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 605 (724)
Q Consensus 550 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 605 (724)
..++....+++..+..+....++++|++.++.+....|++..+...+..+-....+
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 88999999999999999999999999999999999999998887776655444433
No 388
>PF13041 PPR_2: PPR repeat family
Probab=86.67 E-value=2.5 Score=27.11 Aligned_cols=28 Identities=18% Similarity=0.043 Sum_probs=14.6
Q ss_pred HHHhhhhHhhhcCChHHHHHHHHHhhhc
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRN 551 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 551 (724)
+|+.+-..+.+.|++++|.++|+++.+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4455555555555555555555555543
No 389
>KOG2114|consensus
Probab=86.17 E-value=54 Score=35.44 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhccH-hhHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy6603 178 SMVIQDSGDLEEAVKHLDRFKEQIHDK-LTVEETYGALKLKLGQYNEAMKHYESLIER 234 (724)
Q Consensus 178 ~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (724)
-.++.+...|+-|+...+.- ..+++. ..++...|.-+...|++++|...|-+.+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34566677777777766543 223332 446777888888888888888888777654
No 390
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.90 E-value=15 Score=33.88 Aligned_cols=61 Identities=25% Similarity=0.152 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy6603 173 LLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIE 233 (724)
Q Consensus 173 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 233 (724)
.+...+..|...|.+.+|+++.++++..+|-+...+..+..++...|+--.|++.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444566777888888888888888888888888888888888888888888887776543
No 391
>PF13041 PPR_2: PPR repeat family
Probab=85.84 E-value=4.2 Score=26.01 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=10.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHH
Q psy6603 65 WHVYGLLQRSDKKYDEAIKCYRNAL 89 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~~~~a~ 89 (724)
|..+-..+.+.|++++|.+.|+++.
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3333344444444444444444443
No 392
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.75 E-value=2.1 Score=24.01 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHH
Q psy6603 43 RKEEAYEYVRRGLRNDLKSHVCWHVYG 69 (724)
Q Consensus 43 ~~~~A~~~~~~~l~~~p~~~~~~~~lg 69 (724)
+.+.|..+|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344555555555555555555554443
No 393
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=85.61 E-value=20 Score=35.72 Aligned_cols=96 Identities=15% Similarity=0.003 Sum_probs=51.6
Q ss_pred cccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHH-HH
Q psy6603 569 DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTL-KK 647 (724)
Q Consensus 569 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~ 647 (724)
.+..-+|+..++.++..+|.|.....-+..+|..+|-.+.|.+.|..+.-..=..+..- ..+..-....|.+..+. ..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~-h~~~~r~~~~~~~~~~~~~~ 274 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLG-HLILDRLSTLGPFKSAPENL 274 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhH-HHHHHHHhccCcccccchHH
Confidence 34455667777777777777777777777777777777777777765432221111110 00111223344555555 56
Q ss_pred HHHHHHHHhhhhcccchh
Q psy6603 648 CHEVDRHFSEIIEDQFDF 665 (724)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~ 665 (724)
++.+...|.....+..+.
T Consensus 275 ~~~~~~fy~~~~~~~~e~ 292 (365)
T PF09797_consen 275 LENALKFYDNSEKETPEF 292 (365)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666665555444443333
No 394
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.53 E-value=8.7 Score=33.66 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=51.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH
Q psy6603 35 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 96 (724)
Q Consensus 35 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~ 96 (724)
...+.+.+..++|+...+.-++..|.+....+.+-..+.-.|+|++|...++-+-++.|+..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34566778888899988888888898888888888888888999999988888888888763
No 395
>KOG0529|consensus
Probab=85.33 E-value=13 Score=36.19 Aligned_cols=127 Identities=13% Similarity=0.175 Sum_probs=94.2
Q ss_pred hhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCC--HHHHHHHHHHHHHcCCCchhHHHHHHHHHhhc----CCHHHH
Q psy6603 8 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGR--KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD----KKYDEA 81 (724)
Q Consensus 8 ~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~----g~~~~A 81 (724)
+++-+.....+++ .+|++.-+|+....++.+.+. +..=+.+.+++++.+|.+..+|...-.+.... ....+=
T Consensus 91 ld~eL~~~~~~L~--~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 91 LDEELKYVESALK--VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred hHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 4555677778888 788999999999999987764 57889999999999999999987764444332 235667
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHH------hcc------hHHHHHHHHHHHHhCCCchhHHHHH
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQ------MRD------LEGYRETRYQLFMLRPTQRASWIGF 136 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~------~~~------~~~A~~~~~~~l~~~p~~~~~~~~l 136 (724)
+.+..+++..++.|..+|.....+... .|. ...-.+....++-.+|++..+|+..
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 788889999899999999887776652 221 2223344456667788888887763
No 396
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.23 E-value=13 Score=32.68 Aligned_cols=70 Identities=13% Similarity=0.025 Sum_probs=58.7
Q ss_pred hhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccH---HHHHHHHH
Q psy6603 529 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI---QIMRDLSL 598 (724)
Q Consensus 529 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~ 598 (724)
..-+.+.+...+|+...+.-++..|.+....+.+-.+++-.|++++|...++-+-.+.|++. ..|.++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34466778899999999999999999999999999999999999999999999999998874 34444443
No 397
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.03 E-value=4 Score=38.74 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy6603 47 AYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 108 (724)
Q Consensus 47 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 108 (724)
|..+|.+|+.+.|.+...++.+|.+....|+.-.|+-+|-+++-.....+.+..+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56778888888888888888888888888888888888888776554456666666666544
No 398
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=84.70 E-value=30 Score=34.35 Aligned_cols=76 Identities=18% Similarity=0.088 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHH
Q psy6603 461 NEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEE 540 (724)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 540 (724)
..+...+...++.+++.-+|+|..|++.++.+. ..+- .+|.. -.+-+..+++..|.+|..+++|.+
T Consensus 117 ~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id--------l~~~-~l~~~-----V~~~~is~~YyvGFaylMlrRY~D 182 (404)
T PF10255_consen 117 YKMLGYFSLIGLLRVHCLLGDYYQALKVLENID--------LNKK-GLYTK-----VPACHISTYYYVGFAYLMLRRYAD 182 (404)
T ss_pred HHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC--------cccc-hhhcc-----CcchheehHHHHHHHHHHHHHHHH
Confidence 334445566678888899999888888766541 0000 01110 112355689999999999999999
Q ss_pred HHHHHHHhhh
Q psy6603 541 AYEYVRRGLR 550 (724)
Q Consensus 541 A~~~~~~al~ 550 (724)
|++.|...+-
T Consensus 183 Air~f~~iL~ 192 (404)
T PF10255_consen 183 AIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 399
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.55 E-value=1.9 Score=26.68 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=22.5
Q ss_pred hhHHHHHHHhCChhHHHHHHHHHHHH
Q psy6603 629 TECALAYQRLGRWGDTLKKCHEVDRH 654 (724)
Q Consensus 629 ~~la~~~~~~g~~~~A~~~~~~~~~~ 654 (724)
+.+|.+|..+|+.+.|.+.+++++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 45788999999999999999999854
No 400
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.16 E-value=2.7 Score=23.55 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy6603 369 GDTMKALNYINAAIDHTPTLIELFVTKGRI 398 (724)
Q Consensus 369 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 398 (724)
|+.+.|...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456777788888888888777777766543
No 401
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.41 E-value=38 Score=31.37 Aligned_cols=26 Identities=15% Similarity=-0.028 Sum_probs=21.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q psy6603 31 LAMKGLTLNCLGRKEEAYEYVRRGLR 56 (724)
Q Consensus 31 ~~~~a~~~~~~g~~~~A~~~~~~~l~ 56 (724)
-+.+..+++..|+..+|+..|++=+.
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 35667889999999999999987664
No 402
>KOG0276|consensus
Probab=83.36 E-value=16 Score=37.51 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy6603 61 SHVCWHVYGLLQRSDKKYDEAIKCYRNAL 89 (724)
Q Consensus 61 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 89 (724)
+..-|-.||.+....|++..|.++|.++-
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 34445666666666666666666666553
No 403
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=82.56 E-value=42 Score=31.30 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHHHHHhcchHHHHHHHH----------------HHHHhCCCchhHHHHHHH-HHHHcCCHHHHHHHHHHH
Q psy6603 94 DNIQIMRDLSLLQIQMRDLEGYRETRY----------------QLFMLRPTQRASWIGFAM-AYHLLHDFDMACNILEAF 156 (724)
Q Consensus 94 ~~~~~~~~la~~~~~~~~~~~A~~~~~----------------~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~ 156 (724)
.++..+..+|..+.+.|++.+|...|- ...+-.|.....+...+. .|...++...|...++.+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 356677777777777777777766552 112334555555555544 456679999999998888
Q ss_pred HHh
Q psy6603 157 RKT 159 (724)
Q Consensus 157 ~~~ 159 (724)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 404
>KOG1463|consensus
Probab=82.32 E-value=46 Score=31.62 Aligned_cols=61 Identities=11% Similarity=-0.008 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhh------ccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy6603 174 LLYQSMVIQDSGDLEEAVKHLDRFKEQI------HDKLTVEETYGALKLKLGQYNEAMKHYESLIER 234 (724)
Q Consensus 174 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (724)
-..++..|...++|.+|+......++.- +.-..++..-..+|....+..+|...+..+-..
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~ 197 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTT 197 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHh
Confidence 3445667777777777777666554321 112345555667777777777777776665443
No 405
>KOG2062|consensus
Probab=82.24 E-value=74 Score=33.91 Aligned_cols=247 Identities=13% Similarity=0.125 Sum_probs=133.7
Q ss_pred hcCCHHHHHHHHHHHHhcC--CC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhh-hhHHHHHHHcCCH
Q psy6603 367 HLGDTMKALNYINAAIDHT--PT----LIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYIN-SKCAKYMLRANLI 439 (724)
Q Consensus 367 ~~~~~~~A~~~~~~~l~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~g~~ 439 (724)
..|+..+|.+++.--+... |. ...+++.+|.++...|+- ..+++..-++...++...+ ..+|.-+..+|--
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc
Confidence 5688888998888777553 11 345788888888777654 7788877777644332221 2334444444532
Q ss_pred -HHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchh-hhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCC
Q psy6603 440 -KEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWG-DTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPK 517 (724)
Q Consensus 440 -~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 517 (724)
.+-.+.++..+..+..... .. ..+|.-+..+|... +|++. ..+....
T Consensus 447 ~~eiYe~lKevLy~D~AvsG---EA------Agi~MGl~mlGt~~~eaied--------------------m~~Ya~E-- 495 (929)
T KOG2062|consen 447 NEEIYEKLKEVLYNDSAVSG---EA------AGIAMGLLMLGTANQEAIED--------------------MLTYAQE-- 495 (929)
T ss_pred cHHHHHHHHHHHhccchhhh---hH------HHHhhhhHhhCcCcHHHHHH--------------------HHHHhhh--
Confidence 2222233333322211111 00 12344444444332 33321 1111111
Q ss_pred CCchhHHH--HhhhhHhhhcCChHHHHHHHHHhhhcCCCccc----hHHHHHHHHhccccHHHHHHHHHHHhhhccccHH
Q psy6603 518 YAEHGETL--AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV----CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 591 (724)
Q Consensus 518 ~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 591 (724)
..+..+. ...|..+...|+.++|-.+.++++.-. ++. ..+.+|..|.-.|+..--...+.-++.--.++..
T Consensus 496 -TQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVr 572 (929)
T KOG2062|consen 496 -TQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDK--DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVR 572 (929)
T ss_pred -hhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCC--chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHH
Confidence 1122222 345667778889999999999887643 333 5677889999999876655555555543323332
Q ss_pred --HHHHHHHHHHHhhhHhhHHHHHHHHHhhh-hhhhhhhhhhHHHHHHHhCChhHHHHHHHHHH
Q psy6603 592 --IMRDLSLLQIQMRDLEGYREGVSAMENLN-EMQCMWFQTECALAYQRLGRWGDTLKKCHEVD 652 (724)
Q Consensus 592 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 652 (724)
+...+|. ....+.+......+-+.+.. |....-....||.+....| ..+|+.+++.+.
T Consensus 573 RaAVialGF--Vl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~ 633 (929)
T KOG2062|consen 573 RAAVIALGF--VLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLT 633 (929)
T ss_pred HHHHHHhee--eEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhh
Confidence 2233333 34466676766666655443 3333333366777777777 457787776555
No 406
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.06 E-value=41 Score=30.80 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccH-hhHHHHHHHHHH-HcCChHHHHHHHHHHHH
Q psy6603 174 LLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK-LTVEETYGALKL-KLGQYNEAMKHYESLIE 233 (724)
Q Consensus 174 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~-~~g~~~~A~~~~~~~~~ 233 (724)
+..++.+..+.|+|++.+..+++++..+|+- ..-...+..+|- ..|....+...+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4567788888888888888888888876643 223333444432 22333444444444333
No 407
>KOG0546|consensus
Probab=81.79 E-value=2.4 Score=39.99 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=53.0
Q ss_pred cccccchhhHHHHHHHhhCCCC-CCC----------------hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPK-YAE----------------HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVC 64 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~-~p~----------------~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 64 (724)
.|.+++|..|..-+.+.+..-. .|. .......++.+-...+.+..|+..-..++..+++...+
T Consensus 232 ~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka 311 (372)
T KOG0546|consen 232 EFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKA 311 (372)
T ss_pred hhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcH
Confidence 4566777777777766554100 000 00122234444555555555555555555555555555
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy6603 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 103 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 103 (724)
++..+..+....++++|++.+..+....|++..+...+.
T Consensus 312 ~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~ 350 (372)
T KOG0546|consen 312 HYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELE 350 (372)
T ss_pred HHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHH
Confidence 555565555555666666666655555555554444333
No 408
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.46 E-value=83 Score=33.95 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=15.4
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q psy6603 395 KGRIYKHAGDVLEAYKWLDE 414 (724)
Q Consensus 395 l~~~~~~~g~~~~A~~~~~~ 414 (724)
.-.++.-.|+|+.|+.++-+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 44667788999999999877
No 409
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=81.30 E-value=2.6 Score=23.26 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=11.5
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHh
Q psy6603 559 WHVYGLLQRSDKKYDEAIKCYRNAL 583 (724)
Q Consensus 559 ~~~l~~~~~~~~~~~~A~~~~~~al 583 (724)
|..+-..|.+.|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3344444444444444444444443
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.22 E-value=40 Score=33.63 Aligned_cols=62 Identities=15% Similarity=-0.042 Sum_probs=46.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchh--HHHHH--HHHHhhcCCHHHHHHHHHHHHhh
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV--CWHVY--GLLQRSDKKYDEAIKCYRNALKW 91 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--g~~~~~~g~~~~A~~~~~~a~~~ 91 (724)
.....+..++..++|..|...|......-|.... .+..+ |..+...-++.+|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456777889999999999999999885333333 33333 55566788999999999998774
No 411
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.01 E-value=87 Score=33.91 Aligned_cols=114 Identities=5% Similarity=-0.024 Sum_probs=64.2
Q ss_pred ccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHH---hhcCCHH
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQ---RSDKKYD 79 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~---~~~g~~~ 79 (724)
+..|++..+.....++-. +|-. .+..........+.. ...-+...++.+|+.+.......... .+.+++.
T Consensus 44 ~~~g~~~~~~~~~~~l~d---~pL~--~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKD---YPLY--PYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHCCCHHHHHHHHHhccC---CCcH--hHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHH
Confidence 456777777666665433 3321 122222222222211 12245555667788776644443333 2355666
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC
Q psy6603 80 EAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRP 127 (724)
Q Consensus 80 ~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 127 (724)
+-+.++ ...|.+....+..+......|+.++|.....++-....
T Consensus 117 ~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~ 160 (644)
T PRK11619 117 GLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK 160 (644)
T ss_pred HHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence 555522 23478888888888888899998888777766654443
No 412
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=80.93 E-value=2.3 Score=23.50 Aligned_cols=28 Identities=21% Similarity=0.018 Sum_probs=23.6
Q ss_pred HHHhhhhHhhhcCChHHHHHHHHHhhhc
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRN 551 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 551 (724)
+|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4777888899999999999999987654
No 413
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=80.64 E-value=9.8 Score=37.80 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=40.9
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHH--HH--HHHHHHHhccCCHHHHHHHHHHHHHc
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGE--TL--AMKGLTLNCLGRKEEAYEYVRRGLRN 57 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~--~~--~~~a~~~~~~g~~~~A~~~~~~~l~~ 57 (724)
+|+.++|..|...++.+... -|.+.. .+ ...|..+...-++.+|.+.++..+..
T Consensus 141 l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 57899999999999999883 223332 33 34556677888999999999998764
No 414
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.29 E-value=4.2 Score=25.19 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAID 383 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~ 383 (724)
.+|..|...|+.+.|...+++++.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 566667777777777777777664
No 415
>KOG2063|consensus
Probab=80.22 E-value=1e+02 Score=34.27 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCH--HHHHHHHHHHHccCccch-------
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAAIDH----TPTLIELFVTKGRIYKHAGDV--LEAYKWLDEAQSLDTADR------- 423 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~~~~------- 423 (724)
-+..|+..|...|+.++|++.+.+.... ++...+.+-..-.-+...+.. +-..++-.-.+..+|...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 4568899999999999999999998873 333344444444444455544 555555555555555321
Q ss_pred ------hhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccC
Q psy6603 424 ------YINSKCAKYMLRANLIKEAEETCSKFTREGVSAME 458 (724)
Q Consensus 424 ------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 458 (724)
.+......-++.....+-++.+++.++........
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~ 626 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTST 626 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccch
Confidence 11222344456667778888888888865444333
No 416
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=79.32 E-value=5.8 Score=31.91 Aligned_cols=44 Identities=9% Similarity=0.152 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhc--CCCccchHHHHHHHHhccccHHHHHHHHHHHh
Q psy6603 540 EAYEYVRRGLRN--DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNAL 583 (724)
Q Consensus 540 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 583 (724)
++.++|+.+... .-..+..|...|..+...|++++|.++|++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 777888776654 44555577778888888899999998888764
No 417
>KOG4318|consensus
Probab=79.23 E-value=1.1e+02 Score=33.76 Aligned_cols=27 Identities=4% Similarity=-0.143 Sum_probs=24.0
Q ss_pred hhHHHHHHHhCChhHHHHHHHHHHHHH
Q psy6603 629 TECALAYQRLGRWGDTLKKCHEVDRHF 655 (724)
Q Consensus 629 ~~la~~~~~~g~~~~A~~~~~~~~~~~ 655 (724)
..+...+...|++++|+..|..++++.
T Consensus 1022 dlL~~~~v~~~d~e~Ak~lla~liak~ 1048 (1088)
T KOG4318|consen 1022 DLLSEYGVELRDYEEAKNLLAALIAKH 1048 (1088)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHhhc
Confidence 667788999999999999999999774
No 418
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=79.16 E-value=34 Score=28.11 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=39.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6603 362 AQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLD 413 (724)
Q Consensus 362 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 413 (724)
...+...+.....+.+++.++..++.++..+..+..++.+. +..+.+..++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 33445568899999999999998888888888899888765 3455556655
No 419
>KOG0889|consensus
Probab=79.12 E-value=76 Score=40.73 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHH
Q psy6603 388 LIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYM 433 (724)
Q Consensus 388 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 433 (724)
.++.+...|..+.+.|+.++|-..|..|++++..-...+...|...
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~ 2856 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYL 2856 (3550)
T ss_pred HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4566777788888888888888888888877665555555555544
No 420
>KOG2114|consensus
Probab=78.34 E-value=1.1e+02 Score=33.37 Aligned_cols=240 Identities=16% Similarity=0.086 Sum_probs=119.8
Q ss_pred cccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCchhHHHHHHHHHhhcCCHHHHH
Q psy6603 4 EHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN-DLKSHVCWHVYGLLQRSDKKYDEAI 82 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~~g~~~~A~ 82 (724)
.+.-|+-|+.+.+.--.++ ..-.+.....|.-++..|++++|...|-+.+.. +|...- .-+....+..+-.
T Consensus 346 kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi------~kfLdaq~IknLt 417 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI------KKFLDAQRIKNLT 417 (933)
T ss_pred HhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH------HHhcCHHHHHHHH
Confidence 3445556666555433211 122345556677777777888877777777642 232111 1112223333444
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhH--HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 83 KCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRAS--WIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 83 ~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
.+++...+..-.+.+-...|-.||.++++.++-.+..++ .+.-... .-..-.++.+.+-+++|.-+-.++..
T Consensus 418 ~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-- 491 (933)
T KOG2114|consen 418 SYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-- 491 (933)
T ss_pred HHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc--
Confidence 455555555555555566677788888877765544332 2210000 11112334444555555433332211
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH-hhHHHHHHHHHHHcCChHHHHHHHHHHHHHc--CC
Q psy6603 161 QVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK-LTVEETYGALKLKLGQYNEAMKHYESLIERN--QE 237 (724)
Q Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~ 237 (724)
++ ..+-.++...|+|++|+.++... .|+. .......|..+... .+++-...+-+.+... +.
T Consensus 492 --he----------~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~t~~~~~~ 555 (933)
T KOG2114|consen 492 --HE----------WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELITELNSQG 555 (933)
T ss_pred --CH----------HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHHhhcCCCC
Confidence 11 12233566788999999988753 2322 34556667766654 4555555555544432 11
Q ss_pred cHHHHHHHH----HH-hccCChHHHHHHHHHHHHhCCCCCc
Q psy6603 238 NTLYYNKLV----EA-KQLTNNDDIFQLLTHYISKYPKATV 273 (724)
Q Consensus 238 ~~~~~~~l~----~~-~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (724)
........- .+ .-.+++......++...+..|++..
T Consensus 556 ~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 556 KGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred CCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 111111111 11 1235666667777767777776654
No 421
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.70 E-value=59 Score=30.04 Aligned_cols=97 Identities=5% Similarity=0.017 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhh------ccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHc-----CCcHHHH
Q psy6603 174 LLYQSMVIQDSGDLEEAVKHLDRFKEQI------HDKLTVEETYGALKLKLGQYNEAMKHYESLIERN-----QENTLYY 242 (724)
Q Consensus 174 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~ 242 (724)
-..++..+++.|.|.+|+......+... |.-..++..-..+|....+..++...+..+-... |....+.
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~ 207 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQ 207 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHH
Confidence 3445666777777777777666554321 3334566666677777777777666665554331 2222222
Q ss_pred HHHHH--H-hccCChHHHHHHHHHHHHhCCC
Q psy6603 243 NKLVE--A-KQLTNNDDIFQLLTHYISKYPK 270 (724)
Q Consensus 243 ~~l~~--~-~~~~~~~~a~~~~~~~~~~~~~ 270 (724)
..+.. + ....++..|..+|-++.+.+..
T Consensus 208 lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 208 LDLLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred HHHhccceeeccccchhHHHHHHHHHhcccc
Confidence 11111 1 2335677777777766665443
No 422
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.25 E-value=61 Score=29.93 Aligned_cols=127 Identities=12% Similarity=0.101 Sum_probs=84.7
Q ss_pred hHHHHHHHhhCCCCCCChHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCCchhHHHHHHHHH------hhcCCHHHH
Q psy6603 10 NGLKFAKQILTNPKYAEHGETLAMKGLTLNCL--GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQ------RSDKKYDEA 81 (724)
Q Consensus 10 ~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~------~~~g~~~~A 81 (724)
.-+..++.+++ .+|.+...|...-.++... .++..-..+.++.++.+|.|..+|...-.+. ..-..+..-
T Consensus 92 neld~~~~~lk--~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 92 NELDFLDEALK--DNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred cHHHHHHHHHh--cCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 34566777888 7788888887776665544 6677778888899999999988876654444 223334444
Q ss_pred HHHHHHHHhhCCCcHHHHHHH---HHHHHHhcc------hHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy6603 82 IKCYRNALKWEHDNIQIMRDL---SLLQIQMRD------LEGYRETRYQLFMLRPTQRASWIGFAM 138 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~l---a~~~~~~~~------~~~A~~~~~~~l~~~p~~~~~~~~la~ 138 (724)
.++-..++..++.|..+|... .......|+ +++-++..-..+-.+|++..+|..+-.
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 555566777788888887766 333344454 334445555666678888888776543
No 423
>KOG4279|consensus
Probab=76.94 E-value=41 Score=35.63 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=95.0
Q ss_pred HhhhhHhhh---cCChHHHHHHHHHhhhc-CCCccchHHHHHHHHhc---------cccHHHHHHHHHHHhhhccccHHH
Q psy6603 526 AMKGLTLNC---LGRKEEAYEYVRRGLRN-DLKSHVCWHVYGLLQRS---------DKKYDEAIKCYRNALKWEHDNIQI 592 (724)
Q Consensus 526 ~~l~~~~~~---~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~ 592 (724)
+..+.++-+ -|+.++|+...-.+++. .|-.+..+..-|.+|.. .+..+.|+++|+++.+..|.-. .
T Consensus 244 f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-s 322 (1226)
T KOG4279|consen 244 FHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-S 322 (1226)
T ss_pred EEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-c
Confidence 334444443 47788888888877776 45566677777777754 4677899999999999998643 3
Q ss_pred HHHHHHHHHHhhh-HhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhh-hcccchhHHHHH
Q psy6603 593 MRDLSLLQIQMRD-LEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEI-IEDQFDFHTYCM 670 (724)
Q Consensus 593 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~ 670 (724)
-.+++.++...|. ++.-.+.-. ++..|...+.+.|..+.-..+++-.- -|.-. ..+ |+...+.
T Consensus 323 GIN~atLL~aaG~~Fens~Elq~------------IgmkLn~LlgrKG~leklq~YWdV~~-y~~asVLAn--d~~kaiq 387 (1226)
T KOG4279|consen 323 GINLATLLRAAGEHFENSLELQQ------------IGMKLNSLLGRKGALEKLQEYWDVAT-YFEASVLAN--DYQKAIQ 387 (1226)
T ss_pred cccHHHHHHHhhhhccchHHHHH------------HHHHHHHHhhccchHHHHHHHHhHHH-hhhhhhhcc--CHHHHHH
Confidence 3456666665554 333332222 12334445566665555544443222 11100 000 1111111
Q ss_pred hhhhHHHHHHHHhHHhhhcCChHHHHHHHHHHHHHHHhhcCCCCCCchhh
Q psy6603 671 RKMTLRSYVRLLRLEDVLRSHPFYYTAARCAIQVYLRLHDRPCTLDSEQQ 720 (724)
Q Consensus 671 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 720 (724)
-. ..-=-++.--+|.++.+..+.+|-+...-+.+-+-++|
T Consensus 388 Aa----------e~mfKLk~P~WYLkS~meni~l~~~fr~t~e~p~~e~q 427 (1226)
T KOG4279|consen 388 AA----------EMMFKLKPPVWYLKSTMENILLINRFRPTIEPPEKEKQ 427 (1226)
T ss_pred HH----------HHHhccCCceehHHHHHHHHHHHHhcCCCCCCCCcchH
Confidence 00 00111344457889999999999998866666554444
No 424
>KOG4014|consensus
Probab=76.50 E-value=48 Score=28.33 Aligned_cols=97 Identities=13% Similarity=0.099 Sum_probs=66.6
Q ss_pred hchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhh-----hcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhcc-----
Q psy6603 500 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLN-----CLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD----- 569 (724)
Q Consensus 500 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----- 569 (724)
++|++|.++|+.--....+|. .-+.+|.-+. ..++...|++.|..+-. .+++.+...+|.++...
T Consensus 49 knF~~A~kv~K~nCden~y~k---SCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~ 123 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDENSYPK---SCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRK 123 (248)
T ss_pred HHHHHHHHHHHhcccccCCcH---HHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCcc
Confidence 478888888877443334443 4455554333 34678899999998876 45677888888777642
Q ss_pred c--cHHHHHHHHHHHhhhccccHHHHHHHHHHHHHh
Q psy6603 570 K--KYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 603 (724)
Q Consensus 570 ~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 603 (724)
+ +.++|.+++.++-.+ ++..+-+.|+..++.-
T Consensus 124 ~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 124 ADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGG 157 (248)
T ss_pred CCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhcc
Confidence 2 378899999998765 4667777887766544
No 425
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.83 E-value=0.79 Score=38.13 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=52.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHH
Q psy6603 363 QHYDHLGDTMKALNYINAAIDHTP-TLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKE 441 (724)
Q Consensus 363 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~ 441 (724)
..+.+.+.+...+.+++.++..++ .++.....+..+|.+.++.++...+++..-. +-...++....+.|.+++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~------yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN------YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS------S-CTHHHHHHHTTTSHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc------cCHHHHHHHHHhcchHHH
Confidence 345556788888888888886654 4588889999999998877777777762111 222245556666677766
Q ss_pred HHHHHHH
Q psy6603 442 AEETCSK 448 (724)
Q Consensus 442 A~~~~~~ 448 (724)
|.-++.+
T Consensus 89 a~~Ly~~ 95 (143)
T PF00637_consen 89 AVYLYSK 95 (143)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 6655554
No 426
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=75.64 E-value=5.5 Score=22.58 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=10.7
Q ss_pred HHHHHHHhccccHHHHHHHHHHHh
Q psy6603 560 HVYGLLQRSDKKYDEAIKCYRNAL 583 (724)
Q Consensus 560 ~~l~~~~~~~~~~~~A~~~~~~al 583 (724)
..+-..|.+.|++++|.+.|.++.
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444444444444444443
No 427
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=75.62 E-value=76 Score=30.24 Aligned_cols=161 Identities=13% Similarity=0.080 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc--------------------------chHHHHHHHHHHHHhC-CCchh
Q psy6603 79 DEAIKCYRNALKWEHDNIQIMRDLSLLQIQMR--------------------------DLEGYRETRYQLFMLR-PTQRA 131 (724)
Q Consensus 79 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~--------------------------~~~~A~~~~~~~l~~~-p~~~~ 131 (724)
++|+..=.-...+-|..++++-.++.+.++.. -.+++...+.+++... |.-..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq 292 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ 292 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence 56777766677777877777666665554321 2456666666666554 33222
Q ss_pred HHHHHHHHHHH-----cCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh--hccH
Q psy6603 132 SWIGFAMAYHL-----LHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQ--IHDK 204 (724)
Q Consensus 132 ~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~ 204 (724)
..-.++.++.. .-+|..-..+|+...... -+| .+-++.+.......-.+.++...+..... -...
T Consensus 293 lqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a-pSP-------vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy 364 (415)
T COG4941 293 LQAAIAALHARARRAEDTDWPAIDALYDALEQAA-PSP-------VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGY 364 (415)
T ss_pred HHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC-CCC-------eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccc
Confidence 22233333322 234555555555443333 222 34456666666666777777777766554 2334
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy6603 205 LTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVE 247 (724)
Q Consensus 205 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 247 (724)
...+...|..+.++|+.++|...|++++.+.++..+..+....
T Consensus 365 ~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 365 HLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred cccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4567788999999999999999999999998887765544433
No 428
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.40 E-value=41 Score=27.07 Aligned_cols=83 Identities=11% Similarity=0.034 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHhhccCCC--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh--ccHhhHHHHHHHHHHHcC
Q psy6603 144 HDFDMACNILEAFRKTQQVTNS--YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI--HDKLTVEETYGALKLKLG 219 (724)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g 219 (724)
+....-..+++++.+.....+. .++....+|...+. .-+ .+.++|..+.... ...+..+...|..+...|
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD----LSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----TBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----Hcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence 3444555666777776655443 12333344443332 222 7777777766543 445667788888888888
Q ss_pred ChHHHHHHHHHHH
Q psy6603 220 QYNEAMKHYESLI 232 (724)
Q Consensus 220 ~~~~A~~~~~~~~ 232 (724)
++++|..+|+..+
T Consensus 114 ~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 NFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
Confidence 8888888887754
No 429
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=75.16 E-value=21 Score=33.29 Aligned_cols=135 Identities=10% Similarity=0.001 Sum_probs=68.2
Q ss_pred ccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHH---HhccCCH----HHHHHHHHHHHHcCCCchhHHHHHHHHHhhc
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLT---LNCLGRK----EEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD 75 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~---~~~~g~~----~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 75 (724)
..+++|++=-..+++..+.+......+..+..+.. .+..... ..-...++.-++..|++..++..+|..+...
T Consensus 11 L~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~ 90 (277)
T PF13226_consen 11 LQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVHR 90 (277)
T ss_pred HHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 45667777777777766511110111111222211 2222211 1345666667777888777777777666542
Q ss_pred CCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHH
Q psy6603 76 KKYDEAIKCYRNALKW-EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMAC 150 (724)
Q Consensus 76 g~~~~A~~~~~~a~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 150 (724)
.=-- +.... +......+... ..-.+.|...+.++++++|....+...+..+-...|..+=-.
T Consensus 91 Aw~~-------RG~~~A~~V~~~~W~~~------~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~WL~ 153 (277)
T PF13226_consen 91 AWDI-------RGSGYASTVTEAQWLGA------HQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDWLA 153 (277)
T ss_pred HHHH-------HccchhcccCHHHHHHH------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchHHH
Confidence 1000 00000 00111112111 122466777788888888888888887777777777765433
No 430
>KOG0292|consensus
Probab=75.06 E-value=1.4e+02 Score=32.87 Aligned_cols=49 Identities=8% Similarity=-0.103 Sum_probs=36.5
Q ss_pred hhhcCCCccc-hHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHH
Q psy6603 548 GLRNDLKSHV-CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 596 (724)
Q Consensus 548 al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 596 (724)
-.++.|-... ++.....++.+++++..|...-.+.+++.|..+.+....
T Consensus 1075 ~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~r 1124 (1202)
T KOG0292|consen 1075 HCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQAR 1124 (1202)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 3345555444 555555888999999999999999999999887665443
No 431
>KOG1920|consensus
Probab=75.02 E-value=1.6e+02 Score=33.67 Aligned_cols=94 Identities=24% Similarity=0.249 Sum_probs=48.3
Q ss_pred HHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcC
Q psy6603 473 ALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRND 552 (724)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 552 (724)
+..|.+.|+.++|++.+... +++++|+.+..++.... ......-..|+.-+...+++-+|-+.....+. +
T Consensus 959 al~Ye~~GklekAl~a~~~~-------~dWr~~l~~a~ql~~~~--de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d 1028 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKEC-------GDWREALSLAAQLSEGK--DELVILAEELVSRLVEQRKHYEAAKILLEYLS-D 1028 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHh-------ccHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-C
Confidence 44555556666666654433 56666666665543310 01111124556666777777777777666654 2
Q ss_pred CCccchHHHHHHHHhccccHHHHHHHHHHH
Q psy6603 553 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNA 582 (724)
Q Consensus 553 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 582 (724)
|.-.. ..+++...|++|+..-.++
T Consensus 1029 ~~~av------~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 PEEAV------ALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHH------HHHhhHhHHHHHHHHHHhc
Confidence 22222 2333444556665554443
No 432
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.81 E-value=20 Score=25.44 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhhccccHHH
Q psy6603 574 EAIKCYRNALKWEHDNIQI 592 (724)
Q Consensus 574 ~A~~~~~~al~~~p~~~~~ 592 (724)
+|++.+.+++...|+++..
T Consensus 31 ~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHHHHHhCCChHHH
Confidence 3344444444566776653
No 433
>KOG0686|consensus
Probab=74.47 E-value=81 Score=30.96 Aligned_cols=96 Identities=16% Similarity=0.086 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC----cc----chh
Q psy6603 356 WVYHYLAQHYDHLGDTMKALNYINAAIDHTPT---LIELFVTKGRIYKHAGDVLEAYKWLDEAQSLD----TA----DRY 424 (724)
Q Consensus 356 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----~~----~~~ 424 (724)
.++..+|..|...|+++.|++.|-++-....+ ....+.++..+-...|+|..-..+..++.+.- .. ...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 36678999999999999999999996655443 56678888888889999998888888887651 11 122
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHHhhh
Q psy6603 425 INSKCAKYMLRANLIKEAEETCSKFTR 451 (724)
Q Consensus 425 ~~~~~~~~~~~~g~~~~A~~~~~~~~~ 451 (724)
+....|.+.+..+++..|...|-.+..
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344456677777799999888877654
No 434
>KOG0889|consensus
Probab=73.56 E-value=3e+02 Score=36.11 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=61.4
Q ss_pred chhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhc----ccc----HHHHHHHHHHHhhhccccHH
Q psy6603 520 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS----DKK----YDEAIKCYRNALKWEHDNIQ 591 (724)
Q Consensus 520 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~----~~~A~~~~~~al~~~p~~~~ 591 (724)
..++.+...|..+.++|+.++|-..|..|++++-..+.+|..-|.-... .+. -..|+.+|-+|.... ++..
T Consensus 2810 q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~sk 2888 (3550)
T KOG0889|consen 2810 QKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NSSK 2888 (3550)
T ss_pred HHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cchh
Confidence 3567889999999999999999999999999998888899888854432 222 356778777777654 2334
Q ss_pred HHHHHHHHHHHh
Q psy6603 592 IMRDLSLLQIQM 603 (724)
Q Consensus 592 ~~~~l~~~~~~~ 603 (724)
++-.++.+++-+
T Consensus 2889 aRk~iakvLwLl 2900 (3550)
T KOG0889|consen 2889 ARKLIAKVLWLL 2900 (3550)
T ss_pred hHHHHHHHHHHH
Confidence 555566655544
No 435
>KOG4279|consensus
Probab=73.14 E-value=50 Score=35.08 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHHHHc-CCCchhHHHHHHHHHhh---------cCCHHHHHHHHHHHHhhCCCc
Q psy6603 41 LGRKEEAYEYVRRGLRN-DLKSHVCWHVYGLLQRS---------DKKYDEAIKCYRNALKWEHDN 95 (724)
Q Consensus 41 ~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~---------~g~~~~A~~~~~~a~~~~p~~ 95 (724)
-|+.++|+...-.+++. .|-.++.+...|.+|.. .+..+.|+.+|+++.+..|..
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 46777888877777654 34455566666776653 255677888888888887753
No 436
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=72.92 E-value=12 Score=21.08 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy6603 132 SWIGFAMAYHLLHDFDMACNILEAFRK 158 (724)
Q Consensus 132 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 158 (724)
.|..+..++.+.|+++.|..+++.+.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666777777777777777776655
No 437
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=72.52 E-value=1.1e+02 Score=30.63 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhc-cCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q psy6603 132 SWIGFAMAYHLLHDFDMACNILEAFRKTQQ-VTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKE 199 (724)
Q Consensus 132 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 199 (724)
+...+.+++...|+|..|++.++...-... .-......+..+++..|-+|..+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778889999999999887654311000 00112345677889999999999999999999998874
No 438
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=72.43 E-value=10 Score=31.06 Aligned_cols=50 Identities=10% Similarity=-0.139 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchH
Q psy6603 64 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 113 (724)
Q Consensus 64 ~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 113 (724)
.....+......|++.-|......++..+|++..+...++.++.++|.-.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 33444555556677777777777777777777777777777777666543
No 439
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=72.01 E-value=6.7 Score=27.79 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhh
Q psy6603 538 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW 585 (724)
Q Consensus 538 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 585 (724)
.++|+.++++++..| ..|++++|+.+|..+++.
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 456777777776655 478888888888888873
No 440
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=71.57 E-value=6.8 Score=22.18 Aligned_cols=28 Identities=32% Similarity=0.184 Sum_probs=23.9
Q ss_pred HHHhhhhHhhhcCChHHHHHHHHHhhhc
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRN 551 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 551 (724)
+|+.+-..+.+.|++++|.+.|.++.+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4677888899999999999999988764
No 441
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.44 E-value=33 Score=23.85 Aligned_cols=17 Identities=29% Similarity=0.714 Sum_probs=10.6
Q ss_pred ccccHHHHHHHHHHHhh
Q psy6603 568 SDKKYDEAIKCYRNALK 584 (724)
Q Consensus 568 ~~~~~~~A~~~~~~al~ 584 (724)
..|++++|+.+|.++++
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 45666666666666655
No 442
>PRK11619 lytic murein transglycosylase; Provisional
Probab=70.33 E-value=1.7e+02 Score=31.87 Aligned_cols=125 Identities=8% Similarity=-0.120 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK--KYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 106 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 106 (724)
...+..+.-..+.|++..+.....+. .-.|-.+ |...-.+....+ .++ -+...+...|+.|..-.......
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL~~--yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l 106 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPLYP--YLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFV 106 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCcHh--HHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHH
Confidence 45677777888888888776655543 3333322 222222222222 333 23333445666655433333322
Q ss_pred ---HHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCC
Q psy6603 107 ---IQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 107 ---~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p 164 (724)
.+.+++...+.++ ...|.+.......+.+....|+.++|......+-......|
T Consensus 107 ~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p 163 (644)
T PRK11619 107 NELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLP 163 (644)
T ss_pred HHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Confidence 2344555544422 23467777777788888888888777665555444443333
No 443
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=68.71 E-value=26 Score=24.89 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhccc
Q psy6603 631 CALAYQRLGRWGDTLKKCHEVDRHFSEIIEDQ 662 (724)
Q Consensus 631 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 662 (724)
.|.-+-+.|++.+|+..|++.++.+..+....
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~ 43 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAIEVLSQIVKNY 43 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 45577788999999999988888777655443
No 444
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.34 E-value=8.2 Score=27.50 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=12.4
Q ss_pred ccccHHHHHHHHHHHhh
Q psy6603 568 SDKKYDEAIKCYRNALK 584 (724)
Q Consensus 568 ~~~~~~~A~~~~~~al~ 584 (724)
+.|+|++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 46777777777777766
No 445
>KOG0686|consensus
Probab=67.48 E-value=55 Score=32.06 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=62.5
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhcc---ccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhh---hh----hhhhh
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKWEH---DNIQIMRDLSLLQIQMRDLEGYREGVSAMENLN---EM----QCMWF 627 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~----~~~~~ 627 (724)
++.-+|.-|...|+++.|+++|.++-...- .-...+.++..+-..+|+|.........+...+ .+ -..-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 677788888888888888888888665332 234566777777778888876666666555442 11 01111
Q ss_pred hhhHHHHHHHhCChhHHHHHHHHHH
Q psy6603 628 QTECALAYQRLGRWGDTLKKCHEVD 652 (724)
Q Consensus 628 ~~~la~~~~~~g~~~~A~~~~~~~~ 652 (724)
....|.+....++|+.|.+.|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2345567777788888888775443
No 446
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=67.03 E-value=20 Score=29.41 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCC
Q psy6603 172 ELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQ 220 (724)
Q Consensus 172 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 220 (724)
+..+..+......|++.-|.++.+.++..+|++..+...++.++..+|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3455566677778888888888888888888888888888887776653
No 447
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.06 E-value=1.3e+02 Score=28.87 Aligned_cols=89 Identities=10% Similarity=0.077 Sum_probs=48.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH---hhHHHHHH
Q psy6603 136 FAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK---LTVEETYG 212 (724)
Q Consensus 136 la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~la 212 (724)
-|.++...|+|.+....++.+....+...+.....+..--..|..... +...+.+|.. .-+...+|
T Consensus 64 ~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vN-----------DNi~~Y~g~~YE~~~~n~Yka 132 (449)
T COG3014 64 NGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMIN-----------DNVRAYGGNIYEGVLINYYKA 132 (449)
T ss_pred hhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhc-----------cchhhcCchhHHHHHHHHHHH
Confidence 377777778887777777666555433322111111111122222221 1112222332 23566778
Q ss_pred HHHHHcCChHHHHHHHHHHHHHc
Q psy6603 213 ALKLKLGQYNEAMKHYESLIERN 235 (724)
Q Consensus 213 ~~~~~~g~~~~A~~~~~~~~~~~ 235 (724)
.-|+..++++.|.--|.++....
T Consensus 133 LNYm~~nD~~~ArVEfnRan~rQ 155 (449)
T COG3014 133 LNYMLLNDSAKARVEFNRANERQ 155 (449)
T ss_pred hhHHHhcchhhhHHHHHHHHHHH
Confidence 88888899999988888887653
No 448
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=65.76 E-value=63 Score=30.23 Aligned_cols=68 Identities=9% Similarity=0.065 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhcCCCccchHHHHHHHHhcc----------------------ccHHHHHHHHHHHhhhccccHHHHHHHH
Q psy6603 540 EAYEYVRRGLRNDLKSHVCWHVYGLLQRSD----------------------KKYDEAIKCYRNALKWEHDNIQIMRDLS 597 (724)
Q Consensus 540 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------------------~~~~~A~~~~~~al~~~p~~~~~~~~l~ 597 (724)
.-...++.-++..|++..++..+|..+... .-.+.|...+.++++++|....+...+.
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 356667777788999999888888777652 2468899999999999999999999988
Q ss_pred HHHHHhhhHh
Q psy6603 598 LLQIQMRDLE 607 (724)
Q Consensus 598 ~~~~~~~~~~ 607 (724)
.+-...|..+
T Consensus 141 ~~s~~fgeP~ 150 (277)
T PF13226_consen 141 NISAYFGEPD 150 (277)
T ss_pred HHHhhcCCch
Confidence 8777776654
No 449
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=65.66 E-value=5.5 Score=28.57 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=19.1
Q ss_pred hHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhh
Q psy6603 538 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584 (724)
Q Consensus 538 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 584 (724)
++.|.+..++++..+ ..|+.++|+.+|++++.
T Consensus 5 ~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 5 YKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 455556655555544 34666666666666665
No 450
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=65.52 E-value=95 Score=28.13 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=15.5
Q ss_pred cccccchhhHHHHHHHhhC
Q psy6603 2 CYEHKQYKNGLKFAKQILT 20 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~ 20 (724)
+|+.|+|+.|+.+.+-++.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~ 111 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALE 111 (230)
T ss_pred eeeccCHHHHHHHHHHHHH
Confidence 3677888888888888887
No 451
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=65.52 E-value=11 Score=21.20 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=14.6
Q ss_pred HHHhhhhHhhhcCChHHHHHHHHHhhh
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVRRGLR 550 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 550 (724)
+|..+..++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 452
>KOG3024|consensus
Probab=64.65 E-value=1.2e+02 Score=28.18 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=30.9
Q ss_pred HHhHHhhhcCChHHHHHHHHHHHHHHHhhcCCCCC
Q psy6603 681 LLRLEDVLRSHPFYYTAARCAIQVYLRLHDRPCTL 715 (724)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 715 (724)
..+|...|+..+.|....-..+++|+.+.+..+.+
T Consensus 256 ~~~Y~~slkrd~~~~~~L~~IgelyFgi~~~~~~s 290 (312)
T KOG3024|consen 256 RVKYQPSLKRDQAYNEYLDRIGELYFGIRPKQPLS 290 (312)
T ss_pred HHHccchhhhhHHHHHHHHHHHHHHcCCCCCcccc
Confidence 46777788888999999999999999999998877
No 453
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=62.78 E-value=1.8e+02 Score=29.56 Aligned_cols=158 Identities=14% Similarity=0.086 Sum_probs=86.6
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCC------------
Q psy6603 470 TECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGR------------ 537 (724)
Q Consensus 470 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------ 537 (724)
..+|+..+-+|+|+-|...|+.+...+... +|-.. .+.+..+.|.++...+.
T Consensus 212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D----kaw~~------------~A~~~Em~alsl~~~~~~~~~k~~~~~~~ 275 (414)
T PF12739_consen 212 RRLADLAFMLRDYELAYSTYRLLKKDFKND----KAWKY------------LAGAQEMAALSLLMQGQSISAKIRKDEIE 275 (414)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHhhc----hhHHH------------HHhHHHHHHHHHHhcCCCCccccccccHH
Confidence 447888888888888888877664322221 11111 12233344444444332
Q ss_pred --hHHHHHHHHHhh----hcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhh--ccc-----cHHHHHHHHHHHHHhh
Q psy6603 538 --KEEAYEYVRRGL----RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW--EHD-----NIQIMRDLSLLQIQMR 604 (724)
Q Consensus 538 --~~~A~~~~~~al----~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~-----~~~~~~~l~~~~~~~~ 604 (724)
++.|...|.++- ....-...+....+.++...|.+.+|...+-+.... ..+ ..-++-.++.++
T Consensus 276 ~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~---- 351 (414)
T PF12739_consen 276 PYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY---- 351 (414)
T ss_pred HHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh----
Confidence 233444444421 111112226666778888899988888888777765 211 222333333333
Q ss_pred hHhhHHHHHHHHHhh-h--hh----h-hhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhh
Q psy6603 605 DLEGYREGVSAMENL-N--EM----Q-CMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSE 657 (724)
Q Consensus 605 ~~~~a~~~~~~~~~~-~--~~----~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 657 (724)
..... . +. . -++...--|.-|.+.|+...|+..|..++..|..
T Consensus 352 ----------~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 352 ----------ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred ----------cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 00111 1 11 1 1222244567889999999999999999988773
No 454
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=62.51 E-value=1.3e+02 Score=27.71 Aligned_cols=57 Identities=11% Similarity=0.159 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhh-hc--cHhhHHHHHHHHHHH-cCChHHHHHHHHH
Q psy6603 174 LLYQSMVIQDSGDLEEAVKHLDRFKEQ-IH--DKLTVEETYGALKLK-LGQYNEAMKHYES 230 (724)
Q Consensus 174 ~~~~~~~~~~~g~~~~A~~~~~~~~~~-~p--~~~~~~~~la~~~~~-~g~~~~A~~~~~~ 230 (724)
+..++.+..+.++|++.+...+++++. .| -+..-...+..+|-. .|....+...+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 344566666666666666666666654 32 123333444444422 2444445444444
No 455
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=62.38 E-value=86 Score=25.68 Aligned_cols=33 Identities=15% Similarity=0.024 Sum_probs=15.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHh
Q psy6603 41 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73 (724)
Q Consensus 41 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 73 (724)
.+.....+.+++.++..++.++.....+..++.
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~ 52 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYA 52 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHH
Confidence 344455555555554444444444444444443
No 456
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=62.28 E-value=1.9e+02 Score=29.49 Aligned_cols=28 Identities=18% Similarity=-0.020 Sum_probs=23.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRN 57 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 57 (724)
....+|...+-.|+|+-|...|+.+.+-
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~D 237 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKD 237 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4466899999999999999999988763
No 457
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=62.22 E-value=1.6e+02 Score=28.62 Aligned_cols=77 Identities=13% Similarity=0.043 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCC
Q psy6603 359 HYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANL 438 (724)
Q Consensus 359 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~ 438 (724)
+....++...++|++-...... +. .|-.|.-...+....|+..+|..+..+ +.+ ......|++.|+
T Consensus 212 ~lki~aLa~~~~w~eL~~fa~s--kK---sPIGyepFv~~~~~~~~~~eA~~yI~k---~~~------~~rv~~y~~~~~ 277 (319)
T PF04840_consen 212 WLKIKALAENKDWDELEKFAKS--KK---SPIGYEPFVEACLKYGNKKEASKYIPK---IPD------EERVEMYLKCGD 277 (319)
T ss_pred HHHHHHHHhcCCHHHHHHHHhC--CC---CCCChHHHHHHHHHCCCHHHHHHHHHh---CCh------HHHHHHHHHCCC
Confidence 4566677778888766654332 22 334455556667778888888888877 111 245667788888
Q ss_pred HHHHHHHHHHh
Q psy6603 439 IKEAEETCSKF 449 (724)
Q Consensus 439 ~~~A~~~~~~~ 449 (724)
+.+|.+...+.
T Consensus 278 ~~~A~~~A~~~ 288 (319)
T PF04840_consen 278 YKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHHc
Confidence 88887765443
No 458
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=61.58 E-value=33 Score=27.49 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcC--CCccchHHHHHHHHhccccHHHHHHHH
Q psy6603 502 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRND--LKSHVCWHVYGLLQRSDKKYDEAIKCY 579 (724)
Q Consensus 502 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~ 579 (724)
++++++.|.......++|....+|...+... +++.++|.-+.... -..+..|...|..+...|++.+|.++|
T Consensus 49 Lerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 49 LERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444444444444445555555666666542 33566666665543 334446666778888888888888888
Q ss_pred HH
Q psy6603 580 RN 581 (724)
Q Consensus 580 ~~ 581 (724)
+.
T Consensus 123 ~~ 124 (125)
T smart00777 123 QL 124 (125)
T ss_pred Hc
Confidence 64
No 459
>KOG4014|consensus
Probab=61.47 E-value=1.1e+02 Score=26.39 Aligned_cols=186 Identities=15% Similarity=0.029 Sum_probs=114.8
Q ss_pred ChHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHh-----hcCCHHHHHHHHHHHHhhCCCcHHHH
Q psy6603 26 EHGETLAMKGLTLNC-LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR-----SDKKYDEAIKCYRNALKWEHDNIQIM 99 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~-----~~g~~~~A~~~~~~a~~~~p~~~~~~ 99 (724)
..|+.-.++|..+.. +.++++|..+|+.--..+.. +...+.+|..+. ..++...|+..|..+.. .+.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y-~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSY-PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 345677777776543 45788888888876554433 444555665544 24678999999998876 5678888
Q ss_pred HHHHHHHHHh-----cc--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHH
Q psy6603 100 RDLSLLQIQM-----RD--LEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSE 172 (724)
Q Consensus 100 ~~la~~~~~~-----~~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~ 172 (724)
..+|.++..- ++ .++|..++.++..++ +..+.+.|...+..-. +++ ... .|.... +
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k~-------~t~---ap~~g~--p- 171 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EKF-------KTN---APGEGK--P- 171 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hhh-------ccc---CCCCCC--C-
Confidence 8888877632 23 678899998887764 4455556655444321 121 111 221000 0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHc----CChHHHHHHHHHHHHHc
Q psy6603 173 LLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKL----GQYNEAMKHYESLIERN 235 (724)
Q Consensus 173 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~ 235 (724)
...+..+.-..+.+.|.++--++-+++. +.+.-++.+.|..- .+.++|..+-.++.++.
T Consensus 172 --~~~~~~~~~~kDMdka~qfa~kACel~~--~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 172 --LDRAELGSLSKDMDKALQFAIKACELDI--PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred --cchhhhhhhhHhHHHHHHHHHHHHhcCC--hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 1123355566788999999999888874 34444555554332 34577777777776653
No 460
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.41 E-value=40 Score=30.43 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=10.6
Q ss_pred ccHHHHHHHHHHHhhhccc
Q psy6603 570 KKYDEAIKCYRNALKWEHD 588 (724)
Q Consensus 570 ~~~~~A~~~~~~al~~~p~ 588 (724)
++...|+.++++|++++|+
T Consensus 192 ~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDK 210 (230)
T ss_pred ccHHHHHHHHHHHHHhCCC
Confidence 4555555555555555554
No 461
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.02 E-value=28 Score=30.68 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccch
Q psy6603 370 DTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADR 423 (724)
Q Consensus 370 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 423 (724)
..+..++..++.+...|+ +..+..++.++...|+.++|.....++..+.|.+.
T Consensus 126 ~l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHH
Confidence 345566777788888885 77889999999999999999999999999999543
No 462
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.49 E-value=18 Score=25.74 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=10.6
Q ss_pred cCCHHHHHHHHHHHHh
Q psy6603 75 DKKYDEAIKCYRNALK 90 (724)
Q Consensus 75 ~g~~~~A~~~~~~a~~ 90 (724)
.|++++|+.+|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4666777777666665
No 463
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=59.57 E-value=2.1e+02 Score=29.71 Aligned_cols=69 Identities=19% Similarity=0.163 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CccchhhhhhHHHHHHHcCCHHHH
Q psy6603 368 LGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL-----DTADRYINSKCAKYMLRANLIKEA 442 (724)
Q Consensus 368 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~g~~~~A 442 (724)
...|..|+-.+-..-++.|.. .-..++.+|.+++.. +....+-+..+|-++.+.+++.+|
T Consensus 273 l~~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA 337 (618)
T PF05053_consen 273 LARYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREA 337 (618)
T ss_dssp TTT-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHH
T ss_pred hhhCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHH
Confidence 456667777666666666541 123344455555443 223355566677778888888888
Q ss_pred HHHHHHhhh
Q psy6603 443 EETCSKFTR 451 (724)
Q Consensus 443 ~~~~~~~~~ 451 (724)
+..+..+..
T Consensus 338 ~~~Wa~aa~ 346 (618)
T PF05053_consen 338 LRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877766543
No 464
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=58.55 E-value=2.5e+02 Score=29.68 Aligned_cols=99 Identities=11% Similarity=-0.042 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q psy6603 76 KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMR--DLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNIL 153 (724)
Q Consensus 76 g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 153 (724)
|+.++|+...++-.. +..........+.+....+ ....-..+|+.++..+|........+...+.. ...+.+++
T Consensus 323 ~~l~eal~~~e~~c~-~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Ll 398 (547)
T PF14929_consen 323 GRLKEALNELEKFCI-SSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLL 398 (547)
T ss_pred ccHHHHHHHHHHhcc-CCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHH
Confidence 667777666665433 2222333344444444444 44455566677777777665544444333332 33444444
Q ss_pred HHHHHhhccCCCCChhhHHHHHHHHHHHHH
Q psy6603 154 EAFRKTQQVTNSYDFEHSELLLYQSMVIQD 183 (724)
Q Consensus 154 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 183 (724)
+-..-.....| ...+|...+.++.+
T Consensus 399 e~i~~~l~~~~-----s~~iwle~~~~~l~ 423 (547)
T PF14929_consen 399 EMIALHLDLVP-----SHPIWLEFVSCFLK 423 (547)
T ss_pred HHHHHHhhcCC-----CchHHHHHHHHHHh
Confidence 43222222222 23455555555555
No 465
>PRK12798 chemotaxis protein; Reviewed
Probab=58.40 E-value=2e+02 Score=28.68 Aligned_cols=177 Identities=13% Similarity=-0.073 Sum_probs=114.9
Q ss_pred HHHcCCC-chhHHHHHHHHHhhcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhCCCch
Q psy6603 54 GLRNDLK-SHVCWHVYGLLQRSDKKYDEAIKCYRNALKW-EHDNIQIMRDLSLL-QIQMRDLEGYRETRYQLFMLRPTQR 130 (724)
Q Consensus 54 ~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~~l~~~p~~~ 130 (724)
.+..++. +.+.-..-|..-+-.|+-.+|.+.+..+-.. .|.....+..|... .....+...|+..|+.+-=.-|...
T Consensus 103 L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTL 182 (421)
T PRK12798 103 LLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTL 182 (421)
T ss_pred HHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchH
Confidence 3344432 3444455566667789999999888765322 23333344444443 3466788999999998888888733
Q ss_pred ---hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-hcc-Hh
Q psy6603 131 ---ASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQ-IHD-KL 205 (724)
Q Consensus 131 ---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~p~-~~ 205 (724)
.++..-..+....|+.++...+-.++.+.+..+|- -.+.+-..+......++-. -...+..++.. +|. ..
T Consensus 183 vEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~Y----A~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q~ 257 (421)
T PRK12798 183 VEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPY----ASQFAQRFVDLVVRLDDEI-RDARLVEILSFMDPERQR 257 (421)
T ss_pred HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHHHhccccc-cHHHHHHHHHhcCchhHH
Confidence 24444455567889999999988888888876664 3334443444444444222 12335555544 333 35
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q psy6603 206 TVEETYGALKLKLGQYNEAMKHYESLIERN 235 (724)
Q Consensus 206 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 235 (724)
.+|..++..-...|+.+-|...-++++.+.
T Consensus 258 ~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 258 ELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 588899999999999999999999998885
No 466
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=58.37 E-value=1.5e+02 Score=27.24 Aligned_cols=56 Identities=11% Similarity=0.191 Sum_probs=41.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-CC--ChHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAIDH-TP--TLIELFVTKGRIYKH-AGDVLEAYKWLDEA 415 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~~-~p--~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a 415 (724)
.+|.+..+.++|++.+.+.+++++. .| -+.+-...+..+|.. .|....+...+...
T Consensus 6 ~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~si 65 (244)
T smart00101 6 YMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSI 65 (244)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHH
Confidence 6788888899999999999999887 44 356666677777643 46666777766653
No 467
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=56.63 E-value=63 Score=22.46 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=24.9
Q ss_pred hHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc
Q psy6603 630 ECALAYQRLGRWGDTLKKCHEVDRHFSEIIED 661 (724)
Q Consensus 630 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 661 (724)
..|.-.-..|++++|+..|.+.++.+......
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~ 41 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAIEYLMQALKS 41 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 35557778999999999999999887765443
No 468
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=54.98 E-value=78 Score=31.75 Aligned_cols=109 Identities=9% Similarity=0.065 Sum_probs=56.5
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhhHh--h--hh-h---chHHHHHHHHHHhcCCCCCchhHHHHhhhhHhh--hc----
Q psy6603 470 TECALAYQRLGRWGDTLKKCHEVDRKC--Y--EH-K---QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLN--CL---- 535 (724)
Q Consensus 470 ~~~~~~~~~~g~~~~A~~~~~~~~~~~--~--~~-~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~---- 535 (724)
.+.|.-+...|++.+|+..|+.++... . +. . +.++.+.++++ |.+|.... +.
T Consensus 208 Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrE--------------Yilgl~iEl~Rr~l~~ 273 (422)
T PF06957_consen 208 LKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICRE--------------YILGLSIELERRELPK 273 (422)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHH--------------HHHHHHHHHHHCTS-T
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhccc
Confidence 336777788999999999999887321 1 11 2 22222222222 12222111 11
Q ss_pred CChHHHHHHHH-----HhhhcCCCccc-hHHHHHHHHhccccHHHHHHHHHHHhhhccccHHH
Q psy6603 536 GRKEEAYEYVR-----RGLRNDLKSHV-CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQI 592 (724)
Q Consensus 536 g~~~~A~~~~~-----~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 592 (724)
...++....++ ...++.|.+.. ++..-....++.++|..|..+-++.|++.|....+
T Consensus 274 ~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 274 DPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp TTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred cchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 11122222222 22234444433 44444477788999999999999999999977543
No 469
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=53.95 E-value=72 Score=22.89 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=24.6
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhcc
Q psy6603 631 CALAYQRLGRWGDTLKKCHEVDRHFSEIIED 661 (724)
Q Consensus 631 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 661 (724)
.|.-.-..|++++|+..|.+.++.|......
T Consensus 12 ~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~ 42 (77)
T cd02683 12 RAVELDQEGRFQEALVCYQEGIDLLMQVLKG 42 (77)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 4456778899999999999999888875543
No 470
>KOG2063|consensus
Probab=53.85 E-value=3.7e+02 Score=30.29 Aligned_cols=170 Identities=12% Similarity=-0.046 Sum_probs=85.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCchhHHHHHHHHHhhcCCH--HHHHHHHHHHHhhCCCcHH------
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRN----DLKSHVCWHVYGLLQRSDKKY--DEAIKCYRNALKWEHDNIQ------ 97 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~a~~~~p~~~~------ 97 (724)
-+..++..|...|++++|++++.+..+. ++.....+-..-..+...+.- +-..++-.-.+..+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 4566777788888888888888877762 222233333333334444433 4455555555555543211
Q ss_pred -------HHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCC------------HHH-HHHHHHHH
Q psy6603 98 -------IMRDLSLLQIQMRDLEGYRETRYQLFMLRPT-QRASWIGFAMAYHLLHD------------FDM-ACNILEAF 156 (724)
Q Consensus 98 -------~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~------------~~~-A~~~~~~~ 156 (724)
.-.....-++.....+-++.+++.++..... ....+..++..|...=+ .+. -.+-+..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 0011222334556666677777777665543 33333333333332111 011 01222222
Q ss_pred HHh-hccCCC---CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q psy6603 157 RKT-QQVTNS---YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKE 199 (724)
Q Consensus 157 ~~~-~~~~p~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 199 (724)
... ..-.|+ ........+...+.++.+.|+.++|+..+-..+.
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 221 112232 1122355677778888888888888888776554
No 471
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=52.71 E-value=22 Score=25.33 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhh
Q psy6603 538 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584 (724)
Q Consensus 538 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 584 (724)
.++|+..+.+|++.+ ..|++++|+.+|..+++
T Consensus 3 l~~Ai~lv~~Av~~D---------------~~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKKD---------------QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHH
No 472
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.90 E-value=1.2e+02 Score=26.20 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=17.4
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHH
Q psy6603 180 VIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYG 212 (724)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la 212 (724)
++.+.|.+++|.+.+++... +|++......|.
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~ 151 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKLRMKLL 151 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhHHHHHH
Confidence 55566666666666666655 444444333333
No 473
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.61 E-value=2.1e+02 Score=26.78 Aligned_cols=119 Identities=12% Similarity=0.049 Sum_probs=70.0
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhC--------CC--chhHHH----HHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCCh
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLR--------PT--QRASWI----GFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDF 168 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~--------p~--~~~~~~----~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 168 (724)
+....-..|+..|+...++.++.- |. ..+.-. .=.+++..+|+|.+++.+.-++-...+.-|
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP---- 117 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP---- 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC----
Confidence 344445556666666666555432 10 011111 124677889999999887766554443333
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhh-------HHHHHHHHHHHcCChHHHHHHH
Q psy6603 169 EHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLT-------VEETYGALKLKLGQYNEAMKHY 228 (724)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~ 228 (724)
+.++-.-...|.+.|++....+.-..-+. +|+|.. +-..+-.++.=+|.+++|.+..
T Consensus 118 --pkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 118 --PKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 23444445678888998888888777765 444421 2333444555678888888765
No 474
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=50.82 E-value=91 Score=22.39 Aligned_cols=16 Identities=25% Similarity=0.893 Sum_probs=7.9
Q ss_pred cccHHHHHHHHHHHhh
Q psy6603 569 DKKYDEAIKCYRNALK 584 (724)
Q Consensus 569 ~~~~~~A~~~~~~al~ 584 (724)
.|++++|+.+|..+++
T Consensus 19 ~g~y~eAl~~Y~~aie 34 (77)
T cd02683 19 EGRFQEALVCYQEGID 34 (77)
T ss_pred hccHHHHHHHHHHHHH
Confidence 4555555555544444
No 475
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=50.76 E-value=74 Score=24.73 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=22.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy6603 68 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMR 110 (724)
Q Consensus 68 lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 110 (724)
.|.+....|++..|.+...++-+..+..+-.+..-+......|
T Consensus 65 ~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 65 RGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3555555666666666666665543333333333344444433
No 476
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.56 E-value=2.3e+02 Score=26.58 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q psy6603 96 IQIMRDLSLLQIQMRDLEGYRETRYQLFM 124 (724)
Q Consensus 96 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 124 (724)
.+++.++|..|.+.++.+.+.+...+.++
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 44666666666666666666666555544
No 477
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.97 E-value=1.2e+02 Score=26.25 Aligned_cols=47 Identities=4% Similarity=0.100 Sum_probs=25.8
Q ss_pred HHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHH
Q psy6603 564 LLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRE 611 (724)
Q Consensus 564 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 611 (724)
.++.+.|.+++|.+.+++..+ +|++......|..+-.+...+.....
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 455566666666666666666 55555555555554444444443333
No 478
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=48.07 E-value=6 Score=41.40 Aligned_cols=20 Identities=5% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHHhhcCCHHHHHHHHHHH
Q psy6603 69 GLLQRSDKKYDEAIKCYRNA 88 (724)
Q Consensus 69 g~~~~~~g~~~~A~~~~~~a 88 (724)
+..+...|++..|...+.+.
T Consensus 31 a~a~l~~g~~~~A~~ll~~l 50 (536)
T PF04348_consen 31 ARALLQEGDWAQAQALLNQL 50 (536)
T ss_dssp --------------------
T ss_pred HHHHHhCCCHHHHHHHHHhc
Confidence 44455555555555554443
No 479
>KOG4521|consensus
Probab=47.84 E-value=5e+02 Score=30.05 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAAIDHT 385 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 385 (724)
..+.+|.+|...|+..+|+.+|.++..-.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ 950 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGF 950 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhcc
Confidence 34466666777777777777777766543
No 480
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.18 E-value=64 Score=28.45 Aligned_cols=43 Identities=19% Similarity=0.125 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q psy6603 50 YVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 93 (724)
Q Consensus 50 ~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p 93 (724)
..++.+...|+ +..+..++.++...|+.++|.....++....|
T Consensus 133 ~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 133 WAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33333444443 33444444555555555555555555544444
No 481
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=46.83 E-value=6.4 Score=41.18 Aligned_cols=114 Identities=9% Similarity=-0.059 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHH--HcCCCc-hhHHHHHHHHHhhcCCHHHHH
Q psy6603 6 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL--RNDLKS-HVCWHVYGLLQRSDKKYDEAI 82 (724)
Q Consensus 6 ~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--~~~p~~-~~~~~~lg~~~~~~g~~~~A~ 82 (724)
|+...+-+.|-+..+....+.....+..-+..+...|++..|..++.+.- .+.|.. .......+.+....|++++|+
T Consensus 2 ~~~~~aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al 81 (536)
T PF04348_consen 2 GDPRQAAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQAL 81 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 33444444444333311235556677778889999999999999999876 233332 233445588888999999999
Q ss_pred HHHHHHH--hhCCC-cHHHHHHHHHHHHHhcchHHHHHHH
Q psy6603 83 KCYRNAL--KWEHD-NIQIMRDLSLLQIQMRDLEGYRETR 119 (724)
Q Consensus 83 ~~~~~a~--~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~ 119 (724)
..+...- .+.+. ....+...+.++...|++-+|...+
T Consensus 82 ~~L~~~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~ 121 (536)
T PF04348_consen 82 SLLNAQDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARER 121 (536)
T ss_dssp ----------------------------------------
T ss_pred HHhccCCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9887411 11111 1223444566666666666555443
No 482
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=46.74 E-value=3.1e+02 Score=27.31 Aligned_cols=54 Identities=13% Similarity=-0.081 Sum_probs=40.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCc-----hhHHHHH--HHHHhhcCCHHHHHHHHHH
Q psy6603 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKS-----HVCWHVY--GLLQRSDKKYDEAIKCYRN 87 (724)
Q Consensus 34 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~l--g~~~~~~g~~~~A~~~~~~ 87 (724)
.+..++..++|..|...|..++...++. ...+..+ |..++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4557899999999999999999775432 2223334 5555667899999999986
No 483
>PRK12798 chemotaxis protein; Reviewed
Probab=46.46 E-value=3.2e+02 Score=27.40 Aligned_cols=199 Identities=13% Similarity=-0.023 Sum_probs=131.0
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCchhHHHHH-HHHHhhcCCHHHHHHHHHHHHhhCCCcHH---HHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRN-DLKSHVCWHVY-GLLQRSDKKYDEAIKCYRNALKWEHDNIQ---IMRD 101 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~~ 101 (724)
+.+.-...|...+-.|+-.+|.+.+..+-.. -|.....+..| .-......+..+|+..|..+-=..|.... ++..
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR 190 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR 190 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 4455666788888899999999998865422 22223334444 33344568999999999999888898632 5666
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q psy6603 102 LSLLQIQMRDLEGYRETRYQLFMLRPTQRA---SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQS 178 (724)
Q Consensus 102 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 178 (724)
-..+..+.|+.+++..+-.+.+......+- .+-..+....+.++-..- ..+...+... +| .....+|+.++
T Consensus 191 si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~--d~---~~q~~lYL~iA 264 (421)
T PRK12798 191 SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFM--DP---ERQRELYLRIA 264 (421)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhc--Cc---hhHHHHHHHHH
Confidence 666778999999999888888887766553 333333444443322211 1133333332 22 24567899999
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhcc----HhhHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6603 179 MVIQDSGDLEEAVKHLDRFKEQIHD----KLTVEETYGALKLKLGQYNEAMKHYESL 231 (724)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~ 231 (724)
..-.-.|+.+-|.-.-.+++.+... ...+....+....-..++++|...+..+
T Consensus 265 R~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 265 RAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9999999999999999999887632 2334455555555566677777766654
No 484
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=46.38 E-value=43 Score=24.13 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHh
Q psy6603 76 KKYDEAIKCYRNALK 90 (724)
Q Consensus 76 g~~~~A~~~~~~a~~ 90 (724)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 485
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=46.33 E-value=1.1e+02 Score=21.85 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhh-------hccccHHHHHHHHHHHHHhhhHhh
Q psy6603 536 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK-------WEHDNIQIMRDLSLLQIQMRDLEG 608 (724)
Q Consensus 536 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~ 608 (724)
+-.++|+.++.++++.+- .|++++|+.+|..+++ ..|+......-...+..-+.+.+.
T Consensus 1 ~~~~~A~~l~~~Av~~D~---------------~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~ 65 (75)
T cd02678 1 DFLQKAIELVKKAIEEDN---------------AGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEK 65 (75)
T ss_pred ChHHHHHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q psy6603 609 YREGVS 614 (724)
Q Consensus 609 a~~~~~ 614 (724)
-...++
T Consensus 66 LK~~l~ 71 (75)
T cd02678 66 LKEYLA 71 (75)
T ss_pred HHHHHh
No 486
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=46.19 E-value=1.7e+02 Score=30.95 Aligned_cols=62 Identities=13% Similarity=0.014 Sum_probs=38.7
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHH
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYR 86 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 86 (724)
.....+...+..+..+-..|..++|-.+|++.+..+|+ ..++..+.-+.+.|-...|...++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 37 TEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred ccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 44445555666666666666666777777776666666 445555666666666666666555
No 487
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=46.09 E-value=26 Score=24.95 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhh
Q psy6603 539 EEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584 (724)
Q Consensus 539 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 584 (724)
.+|+..+.++++.+ ..|+|++|..+|..+++
T Consensus 4 ~~A~~l~~~Ave~d---------------~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 4 EQAAELIRLALEKE---------------EEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHHH
Confidence 45666666665554 24777777777777766
No 488
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=44.59 E-value=49 Score=18.80 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=7.0
Q ss_pred cHHHHHHHHHHHhh
Q psy6603 571 KYDEAIKCYRNALK 584 (724)
Q Consensus 571 ~~~~A~~~~~~al~ 584 (724)
+..+|+.+|+++.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 45555555555443
No 489
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=44.23 E-value=3.1e+02 Score=26.64 Aligned_cols=77 Identities=13% Similarity=0.029 Sum_probs=50.5
Q ss_pred hhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHH
Q psy6603 521 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 600 (724)
Q Consensus 521 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 600 (724)
+...|.....++...+++++-..... ...+|..|.-...++...|+..+|..+..++ |+ .....+|
T Consensus 207 dkrfw~lki~aLa~~~~w~eL~~fa~-----skKsPIGyepFv~~~~~~~~~~eA~~yI~k~----~~-----~~rv~~y 272 (319)
T PF04840_consen 207 DKRFWWLKIKALAENKDWDELEKFAK-----SKKSPIGYEPFVEACLKYGNKKEASKYIPKI----PD-----EERVEMY 272 (319)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHh-----CCCCCCChHHHHHHHHHCCCHHHHHHHHHhC----Ch-----HHHHHHH
Confidence 44578888888888888876655432 1456677777788888888888888888771 11 1233444
Q ss_pred HHhhhHhhHHH
Q psy6603 601 IQMRDLEGYRE 611 (724)
Q Consensus 601 ~~~~~~~~a~~ 611 (724)
...|+|.+|.+
T Consensus 273 ~~~~~~~~A~~ 283 (319)
T PF04840_consen 273 LKCGDYKEAAQ 283 (319)
T ss_pred HHCCCHHHHHH
Confidence 55556555544
No 490
>KOG0292|consensus
Probab=44.07 E-value=56 Score=35.53 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=22.3
Q ss_pred hcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHh
Q psy6603 534 CLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNAL 583 (724)
Q Consensus 534 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 583 (724)
..|+.+.|++..++. +++..|..||..-..+|+.+-|..+|++.-
T Consensus 655 e~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred hcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 344555555444332 334455555555555555555555555443
No 491
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.25 E-value=2.8e+02 Score=25.91 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=88.2
Q ss_pred hHHHHHHHhhCCCCCCChHHHHHHHHHHHhc--------cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhc--CCHH
Q psy6603 10 NGLKFAKQILTNPKYAEHGETLAMKGLTLNC--------LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD--KKYD 79 (724)
Q Consensus 10 ~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~--g~~~ 79 (724)
.|++.-..++. .+|....+|...-.+... ..-.+.-+..+..+++.+|++...|+..-.++..- .++.
T Consensus 50 ~aLklt~elid--~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~ 127 (328)
T COG5536 50 RALKLTQELID--KNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWG 127 (328)
T ss_pred HHHHHhHHHHh--hCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccc
Confidence 34555555555 556555555544444333 12244567788889999999999998887777654 6678
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHH------HHhcchHHHHHHHHHHHHhCCCchhHHHHH---HHHHHHcCCH
Q psy6603 80 EAIKCYRNALKWEHDNIQIMRDLSLLQ------IQMRDLEGYRETRYQLFMLRPTQRASWIGF---AMAYHLLHDF 146 (724)
Q Consensus 80 ~A~~~~~~a~~~~p~~~~~~~~la~~~------~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l---a~~~~~~g~~ 146 (724)
.-....++.++.+|.|...|...-.+. ....++..-.+.-..++..++.+..+|... ....+..|++
T Consensus 128 rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~v 203 (328)
T COG5536 128 RELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDV 203 (328)
T ss_pred hhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhccc
Confidence 888888999999999987766544443 222233333455567788899999998877 3333444543
No 492
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=43.11 E-value=3.1e+02 Score=26.33 Aligned_cols=36 Identities=6% Similarity=-0.043 Sum_probs=17.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy6603 75 DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMR 110 (724)
Q Consensus 75 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 110 (724)
.+++.+.++..++.+..+|--.+..+..+.+..+.|
T Consensus 112 ~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 112 QADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG 147 (301)
T ss_pred CCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC
Confidence 344445555555555444444445555555555544
No 493
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=43.09 E-value=1.4e+02 Score=31.39 Aligned_cols=81 Identities=7% Similarity=-0.004 Sum_probs=50.9
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHH
Q psy6603 38 LNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRE 117 (724)
Q Consensus 38 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~ 117 (724)
+.+....+.+....+.-+.....+.......+..+-..|..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 334455566666666555444444444555566666677777777777777777766 556666666666776666666
Q ss_pred HHH
Q psy6603 118 TRY 120 (724)
Q Consensus 118 ~~~ 120 (724)
.+.
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 554
No 494
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=42.33 E-value=61 Score=25.75 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=22.1
Q ss_pred HHHHHHhccccHHHHHHHHHHHhhhccccHHH
Q psy6603 561 VYGLLQRSDKKYDEAIKCYRNALKWEHDNIQI 592 (724)
Q Consensus 561 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 592 (724)
.+|..+...|++++|..+|-+|+...|+....
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 46777777777777777777777777766543
No 495
>KOG1497|consensus
Probab=42.32 E-value=3.1e+02 Score=26.17 Aligned_cols=95 Identities=7% Similarity=0.032 Sum_probs=59.4
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhc-cc------cHHHHHHHHHHHHHhhhHhhHHHHHHHHHh--h---hhhhhh
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKWE-HD------NIQIMRDLSLLQIQMRDLEGYREGVSAMEN--L---NEMQCM 625 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~ 625 (724)
....++.+|.+.++|..|...+.-+-... |. -...+..++.+|+..++..+|.....+..- . ++.-..
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqi 184 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQI 184 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHH
Confidence 56678888888888888887765432211 11 124566788888888888777776665321 1 111122
Q ss_pred hhhhhHHHHHHHhCChhHHHHHHHHHH
Q psy6603 626 WFQTECALAYQRLGRWGDTLKKCHEVD 652 (724)
Q Consensus 626 ~~~~~la~~~~~~g~~~~A~~~~~~~~ 652 (724)
-+...-|+++-..++|-||-+.|-++.
T Consensus 185 e~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 185 EYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222455667777788888887777665
No 496
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.62 E-value=68 Score=18.31 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHH
Q psy6603 44 KEEAYEYVRRGLRNDLKSHVCWHVYG 69 (724)
Q Consensus 44 ~~~A~~~~~~~l~~~p~~~~~~~~lg 69 (724)
++.|..+|++.+...|+ +..|...+
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 45566666666665544 44444433
No 497
>KOG2280|consensus
Probab=41.33 E-value=5.1e+02 Score=28.27 Aligned_cols=100 Identities=15% Similarity=0.049 Sum_probs=68.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHH
Q psy6603 365 YDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEE 444 (724)
Q Consensus 365 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 444 (724)
+...|+..+|.++-.+. + -| +-..|......+...+++++-.+.-+. . ..|.-+.-...+..+.|+.++|.+
T Consensus 694 li~~g~~k~a~ql~~~F-k-ip-dKr~~wLk~~aLa~~~kweeLekfAks---k--ksPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 694 LILIGQNKRAEQLKSDF-K-IP-DKRLWWLKLTALADIKKWEELEKFAKS---K--KSPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHccchHHHHHHHHhc-C-Cc-chhhHHHHHHHHHhhhhHHHHHHHHhc---c--CCCCCchhHHHHHHhcccHHHHhh
Confidence 33468888887765542 1 13 345677778888888888875544332 1 124445556778899999999999
Q ss_pred HHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhh
Q psy6603 445 TCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKC 489 (724)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 489 (724)
++.+.-.. .+...+|.+.|++.+|.+..
T Consensus 766 Yiprv~~l-----------------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 766 YIPRVGGL-----------------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhccCCh-----------------HHHHHHHHHhccHHHHHHHH
Confidence 98886531 12688899999999998753
No 498
>KOG4151|consensus
Probab=41.13 E-value=93 Score=33.50 Aligned_cols=105 Identities=12% Similarity=-0.077 Sum_probs=79.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCc----hhHHHHHHHHHhh--cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKS----HVCWHVYGLLQRS--DKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 105 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~--~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 105 (724)
..-|..++..+++.+|.--|..++..-|.+ .......+.++.. .|+|..++.-..-++...|....++...+.+
T Consensus 57 ~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~ 136 (748)
T KOG4151|consen 57 KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARK 136 (748)
T ss_pred HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhH
Confidence 334667788888888877788777776643 2234445555544 5789999999999999999999999999999
Q ss_pred HHHhcchHHHHHHHHHHHHhCCCchhHHHHH
Q psy6603 106 QIQMRDLEGYRETRYQLFMLRPTQRASWIGF 136 (724)
Q Consensus 106 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 136 (724)
|...+.++-|++...-.....|.++.+....
T Consensus 137 y~al~k~d~a~rdl~i~~~~~p~~~~~~eif 167 (748)
T KOG4151|consen 137 YEALNKLDLAVRDLRIVEKMDPSNVSASEIF 167 (748)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 9999999999988877788888886554433
No 499
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=40.85 E-value=1.3e+02 Score=21.44 Aligned_cols=35 Identities=9% Similarity=0.002 Sum_probs=26.7
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhcccchh
Q psy6603 631 CALAYQRLGRWGDTLKKCHEVDRHFSEIIEDQFDF 665 (724)
Q Consensus 631 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 665 (724)
.|.-.-..|+|++|...|...++.|....+...|.
T Consensus 12 ~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~ 46 (75)
T cd02677 12 LALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSP 46 (75)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 33455677999999999999999988776664443
No 500
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.80 E-value=1.1e+02 Score=20.69 Aligned_cols=28 Identities=11% Similarity=0.330 Sum_probs=21.0
Q ss_pred hhHHHHHHHhCChhHHHHHHHHHHHHHh
Q psy6603 629 TECALAYQRLGRWGDTLKKCHEVDRHFS 656 (724)
Q Consensus 629 ~~la~~~~~~g~~~~A~~~~~~~~~~~~ 656 (724)
..+...|...|++++|.+++.++.+...
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~~~ 54 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKDLQ 54 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3455588899999999999988887644
Done!