Query psy6603
Match_columns 724
No_of_seqs 1212 out of 3508
Neff 11.9
Searched_HMMs 29240
Date Fri Aug 16 22:22:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-43 5.2E-48 357.3 45.5 384 33-604 4-387 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 6.2E-43 2.1E-47 352.8 44.8 380 2-571 9-388 (388)
3 2xpi_A Anaphase-promoting comp 100.0 7.2E-44 2.5E-48 382.3 35.5 458 26-601 82-595 (597)
4 2xpi_A Anaphase-promoting comp 100.0 4.6E-41 1.6E-45 360.5 42.0 474 60-655 82-580 (597)
5 3fp2_A TPR repeat-containing p 100.0 9.2E-39 3.2E-43 338.1 38.1 464 9-621 4-493 (537)
6 2gw1_A Mitochondrial precursor 100.0 5.3E-38 1.8E-42 330.5 41.5 428 27-598 5-491 (514)
7 3fp2_A TPR repeat-containing p 100.0 9.5E-37 3.2E-41 322.7 37.5 438 2-595 35-501 (537)
8 2y4t_A DNAJ homolog subfamily 100.0 8.7E-36 3E-40 307.6 42.5 367 8-605 8-378 (450)
9 2gw1_A Mitochondrial precursor 100.0 3.5E-36 1.2E-40 316.6 39.3 448 61-623 5-482 (514)
10 3ieg_A DNAJ homolog subfamily 100.0 1.2E-32 4.1E-37 275.0 42.2 323 27-435 2-352 (359)
11 3ieg_A DNAJ homolog subfamily 100.0 1.6E-32 5.6E-37 274.0 42.2 341 61-605 2-355 (359)
12 2y4t_A DNAJ homolog subfamily 100.0 1E-32 3.4E-37 284.6 41.3 376 2-487 36-446 (450)
13 4g1t_A Interferon-induced prot 100.0 5E-34 1.7E-38 296.2 31.2 413 6-597 25-471 (472)
14 4g1t_A Interferon-induced prot 100.0 2.5E-31 8.5E-36 275.9 35.7 379 63-621 52-461 (472)
15 3hym_B Cell division cycle pro 100.0 2.4E-30 8.2E-35 254.9 33.2 303 23-439 17-321 (330)
16 2ooe_A Cleavage stimulation fa 100.0 7.8E-29 2.7E-33 259.7 40.5 397 51-590 2-459 (530)
17 2xm6_A Protein corresponding t 100.0 5.8E-28 2E-32 250.4 46.3 379 47-602 26-452 (490)
18 3hym_B Cell division cycle pro 100.0 1.2E-29 4.2E-34 249.8 31.6 299 170-607 21-322 (330)
19 2xm6_A Protein corresponding t 100.0 9.5E-28 3.3E-32 248.8 47.3 401 11-592 26-474 (490)
20 2ooe_A Cleavage stimulation fa 100.0 8.1E-28 2.8E-32 252.0 44.7 418 15-590 2-497 (530)
21 1fch_A Peroxisomal targeting s 100.0 2.3E-29 8E-34 251.9 26.9 298 37-451 34-358 (368)
22 1fch_A Peroxisomal targeting s 100.0 3.7E-29 1.3E-33 250.4 27.7 293 4-418 37-359 (368)
23 4eqf_A PEX5-related protein; a 100.0 1.6E-28 5.6E-33 245.1 25.0 276 29-451 66-355 (365)
24 3cv0_A Peroxisome targeting si 100.0 2.4E-27 8.1E-32 233.1 25.6 286 26-422 19-319 (327)
25 4eqf_A PEX5-related protein; a 100.0 4.6E-27 1.6E-31 234.6 24.9 278 357-656 67-358 (365)
26 2h6f_A Protein farnesyltransfe 100.0 6.9E-27 2.4E-31 229.2 25.3 255 23-402 92-366 (382)
27 2h6f_A Protein farnesyltransfe 100.0 1.1E-26 3.8E-31 227.7 24.0 255 90-435 91-365 (382)
28 2pl2_A Hypothetical conserved 99.9 2.2E-26 7.5E-31 209.3 22.3 200 25-232 2-212 (217)
29 3cv0_A Peroxisome targeting si 99.9 1.2E-26 4.2E-31 227.9 21.4 261 2-271 31-319 (327)
30 3e4b_A ALGK; tetratricopeptide 99.9 6.3E-25 2.1E-29 223.3 29.4 378 32-615 7-417 (452)
31 3mkr_A Coatomer subunit epsilo 99.9 9.5E-25 3.3E-29 207.5 27.3 275 37-446 8-288 (291)
32 3u4t_A TPR repeat-containing p 99.9 1.3E-24 4.6E-29 206.9 27.7 261 27-403 2-269 (272)
33 3sf4_A G-protein-signaling mod 99.9 5.2E-25 1.8E-29 223.6 26.2 306 25-441 6-365 (406)
34 1xi4_A Clathrin heavy chain; a 99.9 7.1E-22 2.4E-26 211.4 47.8 254 359-649 1225-1529(1630)
35 2pl2_A Hypothetical conserved 99.9 1.5E-24 5.3E-29 197.1 23.7 200 59-266 2-213 (217)
36 3e4b_A ALGK; tetratricopeptide 99.9 8.1E-25 2.8E-29 222.5 23.5 229 2-248 13-257 (452)
37 3mkr_A Coatomer subunit epsilo 99.9 6.7E-24 2.3E-28 201.7 28.2 255 2-273 9-270 (291)
38 4a1s_A PINS, partner of inscut 99.9 1.6E-24 5.6E-29 220.1 25.6 286 25-421 45-375 (411)
39 3u4t_A TPR repeat-containing p 99.9 1.2E-24 4.1E-29 207.3 22.9 238 2-249 13-265 (272)
40 3uq3_A Heat shock protein STI1 99.9 7.1E-24 2.4E-28 200.2 27.3 164 27-240 4-174 (258)
41 3uq3_A Heat shock protein STI1 99.9 6.2E-24 2.1E-28 200.6 26.7 243 97-431 6-255 (258)
42 3sf4_A G-protein-signaling mod 99.9 1.9E-23 6.5E-28 212.1 29.8 314 60-487 7-368 (406)
43 3ro2_A PINS homolog, G-protein 99.9 1.9E-23 6.5E-28 206.2 27.8 284 27-421 4-335 (338)
44 1xi4_A Clathrin heavy chain; a 99.9 4.7E-21 1.6E-25 205.2 47.1 403 66-604 989-1415(1630)
45 4a1s_A PINS, partner of inscut 99.9 8.6E-23 2.9E-27 207.4 27.4 284 59-453 45-373 (411)
46 3ro2_A PINS homolog, G-protein 99.9 1.6E-22 5.4E-27 199.6 27.4 282 62-454 5-334 (338)
47 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.3E-23 1.8E-27 196.2 22.9 248 3-261 16-269 (275)
48 2q7f_A YRRB protein; TPR, prot 99.9 6.4E-23 2.2E-27 191.6 22.1 215 27-248 22-236 (243)
49 2vq2_A PILW, putative fimbrial 99.9 8.9E-22 3E-26 181.4 28.4 216 23-245 3-222 (225)
50 2ho1_A Type 4 fimbrial biogene 99.9 4.8E-22 1.6E-26 186.7 26.2 216 23-245 31-249 (252)
51 4abn_A Tetratricopeptide repea 99.9 9.8E-23 3.3E-27 208.6 21.7 219 6-231 82-318 (474)
52 3vtx_A MAMA; tetratricopeptide 99.9 4E-22 1.4E-26 176.7 22.6 171 27-238 4-174 (184)
53 3vtx_A MAMA; tetratricopeptide 99.9 8E-22 2.7E-26 174.8 23.4 157 2-160 15-171 (184)
54 1ouv_A Conserved hypothetical 99.9 1.1E-20 3.6E-25 179.6 31.3 229 24-271 2-255 (273)
55 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.1E-22 7.3E-27 192.1 19.4 189 34-231 11-203 (275)
56 2q7f_A YRRB protein; TPR, prot 99.9 4.6E-22 1.6E-26 185.8 20.8 209 2-219 33-241 (243)
57 2vq2_A PILW, putative fimbrial 99.9 5.7E-21 2E-25 175.9 27.9 212 57-273 3-217 (225)
58 1ouv_A Conserved hypothetical 99.9 1.7E-20 6E-25 178.1 30.3 232 58-424 2-257 (273)
59 4i17_A Hypothetical protein; T 99.9 5.1E-21 1.7E-25 176.3 24.9 210 25-248 4-223 (228)
60 3ulq_A Response regulator aspa 99.9 2.9E-21 1E-25 193.5 24.6 303 3-419 23-369 (383)
61 2ho1_A Type 4 fimbrial biogene 99.9 6.1E-21 2.1E-25 179.1 25.0 213 56-273 30-244 (252)
62 1b89_A Protein (clathrin heavy 99.9 1.9E-22 6.5E-27 193.8 14.5 392 37-615 12-413 (449)
63 3ulq_A Response regulator aspa 99.9 4.2E-20 1.4E-24 185.1 31.0 177 133-420 106-295 (383)
64 2ond_A Cleavage stimulation fa 99.9 1.5E-20 5E-25 181.5 25.4 222 45-273 33-276 (308)
65 2ond_A Cleavage stimulation fa 99.9 1.8E-20 6.2E-25 180.9 25.6 223 9-240 33-276 (308)
66 4abn_A Tetratricopeptide repea 99.9 3.4E-21 1.2E-25 197.1 21.6 212 43-262 83-316 (474)
67 4gyw_A UDP-N-acetylglucosamine 99.9 9.7E-21 3.3E-25 200.5 21.5 174 23-203 4-177 (723)
68 4e6h_A MRNA 3'-END-processing 99.9 2.6E-17 8.7E-22 172.0 46.3 487 43-657 47-573 (679)
69 3qky_A Outer membrane assembly 99.9 4E-20 1.4E-24 174.1 21.7 198 23-224 10-251 (261)
70 4i17_A Hypothetical protein; T 99.9 2.8E-20 9.7E-25 171.2 20.2 185 357-599 9-223 (228)
71 4gyw_A UDP-N-acetylglucosamine 99.9 1.8E-20 6E-25 198.5 21.2 176 57-239 4-179 (723)
72 3nf1_A KLC 1, kinesin light ch 99.9 1.7E-20 5.8E-25 182.5 19.2 250 21-270 20-310 (311)
73 4e6h_A MRNA 3'-END-processing 99.9 2.9E-17 9.9E-22 171.6 44.5 428 8-591 48-576 (679)
74 3nf1_A KLC 1, kinesin light ch 99.8 2.9E-20 9.9E-25 180.9 18.7 264 57-421 22-310 (311)
75 3q15_A PSP28, response regulat 99.8 3.8E-19 1.3E-23 177.6 25.7 172 64-236 103-292 (378)
76 3dra_A Protein farnesyltransfe 99.8 1.4E-18 4.9E-23 162.6 25.5 235 5-248 45-302 (306)
77 1qqe_A Vesicular transport pro 99.8 1.6E-19 5.5E-24 172.5 19.2 219 30-248 39-283 (292)
78 3q15_A PSP28, response regulat 99.8 2.1E-18 7.1E-23 172.2 27.9 248 391-658 103-369 (378)
79 3urz_A Uncharacterized protein 99.8 2.1E-19 7.1E-24 161.9 18.3 171 27-205 3-191 (208)
80 4ga2_A E3 SUMO-protein ligase 99.8 6.8E-20 2.3E-24 154.9 14.2 141 3-145 8-149 (150)
81 3qky_A Outer membrane assembly 99.8 1.4E-18 4.6E-23 163.6 23.4 185 55-243 8-233 (261)
82 1b89_A Protein (clathrin heavy 99.8 2.7E-20 9.2E-25 179.0 11.2 224 5-271 16-240 (449)
83 1hz4_A MALT regulatory protein 99.8 1.3E-17 4.4E-22 166.5 29.5 231 3-235 25-283 (373)
84 1qqe_A Vesicular transport pro 99.8 3.2E-18 1.1E-22 163.5 23.7 215 105-429 46-280 (292)
85 1hz4_A MALT regulatory protein 99.8 1.1E-16 3.7E-21 159.8 35.4 278 132-588 55-352 (373)
86 2pzi_A Probable serine/threoni 99.8 4.6E-19 1.6E-23 189.7 18.4 191 23-224 389-587 (681)
87 3dra_A Protein farnesyltransfe 99.8 1.6E-17 5.6E-22 155.5 26.1 220 368-654 46-287 (306)
88 3edt_B KLC 2, kinesin light ch 99.8 7.2E-19 2.5E-23 168.3 16.9 231 4-234 13-281 (283)
89 2yhc_A BAMD, UPF0169 lipoprote 99.8 7.7E-18 2.6E-22 154.0 21.6 188 27-238 3-217 (225)
90 2pzi_A Probable serine/threoni 99.8 4.6E-18 1.6E-22 182.0 23.0 185 3-197 402-602 (681)
91 3as5_A MAMA; tetratricopeptide 99.8 7.8E-18 2.7E-22 149.5 19.8 171 27-204 7-177 (186)
92 4ga2_A E3 SUMO-protein ligase 99.8 8.2E-19 2.8E-23 148.2 12.0 147 33-186 2-149 (150)
93 3dss_A Geranylgeranyl transfer 99.8 8E-17 2.7E-21 151.3 26.4 235 5-248 42-318 (331)
94 3as5_A MAMA; tetratricopeptide 99.8 1.4E-17 4.8E-22 147.9 20.2 172 61-239 7-178 (186)
95 4gco_A Protein STI-1; structur 99.8 2.9E-18 9.9E-23 139.5 14.3 118 23-140 8-125 (126)
96 3urz_A Uncharacterized protein 99.8 1E-17 3.6E-22 150.7 18.9 175 357-598 6-198 (208)
97 3dss_A Geranylgeranyl transfer 99.8 4.2E-16 1.4E-20 146.4 26.2 226 39-271 40-308 (331)
98 2yhc_A BAMD, UPF0169 lipoprote 99.7 6.6E-17 2.2E-21 147.8 19.7 190 61-273 3-219 (225)
99 3edt_B KLC 2, kinesin light ch 99.7 4.1E-17 1.4E-21 156.0 17.1 229 39-267 12-281 (283)
100 2r5s_A Uncharacterized protein 99.7 2.8E-17 9.7E-22 143.7 14.2 169 25-199 3-172 (176)
101 3gyz_A Chaperone protein IPGC; 99.7 1.4E-17 4.9E-22 139.1 11.5 115 14-130 24-138 (151)
102 2ifu_A Gamma-SNAP; membrane fu 99.7 1.8E-16 6.1E-21 152.6 19.2 227 4-259 3-253 (307)
103 3q7a_A Farnesyltransferase alp 99.7 9.4E-16 3.2E-20 144.5 22.7 232 360-656 59-333 (349)
104 4f3v_A ESX-1 secretion system 99.7 5.3E-17 1.8E-21 147.6 13.4 212 29-248 8-250 (282)
105 3q7a_A Farnesyltransferase alp 99.7 1.6E-15 5.5E-20 142.9 23.2 233 7-248 69-346 (349)
106 3qou_A Protein YBBN; thioredox 99.7 5.2E-16 1.8E-20 147.3 19.5 169 25-198 114-282 (287)
107 2r5s_A Uncharacterized protein 99.7 1.4E-16 4.9E-21 139.2 13.2 168 58-233 2-172 (176)
108 2ifu_A Gamma-SNAP; membrane fu 99.7 2.8E-15 9.6E-20 144.2 23.5 172 40-236 3-186 (307)
109 4f3v_A ESX-1 secretion system 99.7 6.9E-16 2.4E-20 140.3 17.5 206 359-597 11-248 (282)
110 4gco_A Protein STI-1; structur 99.7 4.6E-16 1.6E-20 126.4 14.5 121 53-180 4-124 (126)
111 3gyz_A Chaperone protein IPGC; 99.7 4E-17 1.4E-21 136.4 8.1 112 49-160 23-134 (151)
112 2vgx_A Chaperone SYCD; alterna 99.7 2.3E-16 7.8E-21 132.6 12.4 121 12-134 7-127 (148)
113 3qou_A Protein YBBN; thioredox 99.7 1.4E-15 4.7E-20 144.4 19.4 167 59-232 114-282 (287)
114 2c2l_A CHIP, carboxy terminus 99.7 2.7E-16 9.3E-21 148.6 13.6 197 25-233 1-198 (281)
115 2xcb_A PCRH, regulatory protei 99.7 5.4E-16 1.8E-20 129.8 12.5 124 13-138 5-128 (142)
116 2vsy_A XCC0866; transferase, g 99.7 2E-15 6.7E-20 159.4 19.3 156 5-162 2-160 (568)
117 2vsy_A XCC0866; transferase, g 99.7 1.7E-15 6E-20 159.8 18.4 165 41-212 2-169 (568)
118 3upv_A Heat shock protein STI1 99.6 4.5E-15 1.6E-19 121.5 15.1 118 25-142 1-124 (126)
119 1p5q_A FKBP52, FK506-binding p 99.6 5.1E-16 1.7E-20 150.8 10.8 154 4-159 125-294 (336)
120 2vgx_A Chaperone SYCD; alterna 99.6 3.2E-15 1.1E-19 125.6 13.7 118 48-165 7-124 (148)
121 3rjv_A Putative SEL1 repeat pr 99.6 2.6E-14 8.9E-19 128.7 19.7 176 47-235 5-198 (212)
122 3rjv_A Putative SEL1 repeat pr 99.6 3E-14 1E-18 128.3 19.2 178 9-203 3-200 (212)
123 2lni_A Stress-induced-phosphop 99.6 1.8E-14 6.3E-19 119.4 16.2 124 22-145 10-133 (133)
124 2e2e_A Formate-dependent nitri 99.6 4.9E-15 1.7E-19 129.8 13.3 130 2-133 20-152 (177)
125 2fo7_A Synthetic consensus TPR 99.6 3.6E-14 1.2E-18 118.0 17.6 132 29-160 2-133 (136)
126 1p5q_A FKBP52, FK506-binding p 99.6 3.1E-16 1.1E-20 152.3 4.9 184 6-234 79-294 (336)
127 2c2l_A CHIP, carboxy terminus 99.6 1.4E-14 4.9E-19 136.8 16.2 100 357-456 6-105 (281)
128 2xcb_A PCRH, regulatory protei 99.6 1.4E-14 4.7E-19 121.2 13.7 117 49-165 5-121 (142)
129 3sz7_A HSC70 cochaperone (SGT) 99.6 2.1E-14 7.3E-19 123.7 14.9 119 23-141 6-124 (164)
130 1a17_A Serine/threonine protei 99.6 5.2E-14 1.8E-18 121.9 17.4 134 27-160 12-147 (166)
131 2qfc_A PLCR protein; TPR, HTH, 99.6 2.3E-13 7.8E-18 130.0 22.4 178 58-235 71-267 (293)
132 3mv2_B Coatomer subunit epsilo 99.6 3.6E-13 1.2E-17 124.2 21.8 249 2-273 23-288 (310)
133 2e2e_A Formate-dependent nitri 99.6 4E-14 1.4E-18 123.9 14.8 127 38-164 20-149 (177)
134 2vyi_A SGTA protein; chaperone 99.6 3.4E-14 1.2E-18 117.3 13.6 124 23-146 7-130 (131)
135 4gcn_A Protein STI-1; structur 99.6 7.6E-15 2.6E-19 119.6 9.2 108 520-655 6-113 (127)
136 2hr2_A Hypothetical protein; a 99.6 1.4E-14 4.8E-19 118.3 10.1 110 27-136 10-142 (159)
137 2fo7_A Synthetic consensus TPR 99.6 2.3E-13 7.8E-18 113.1 17.9 133 63-202 2-134 (136)
138 2fbn_A 70 kDa peptidylprolyl i 99.6 7.8E-15 2.7E-19 131.1 8.9 143 6-150 18-176 (198)
139 1hxi_A PEX5, peroxisome target 99.5 4.5E-14 1.5E-18 113.7 12.4 103 29-131 18-120 (121)
140 2qfc_A PLCR protein; TPR, HTH, 99.5 5.5E-13 1.9E-17 127.3 21.8 173 28-201 75-267 (293)
141 4gcn_A Protein STI-1; structur 99.5 5.4E-14 1.9E-18 114.5 12.4 103 26-128 6-115 (127)
142 1a17_A Serine/threonine protei 99.5 1.1E-13 3.9E-18 119.7 15.2 139 521-659 12-151 (166)
143 1hh8_A P67PHOX, NCF-2, neutrop 99.5 1.3E-13 4.5E-18 125.0 16.2 131 27-160 5-151 (213)
144 2uy1_A Cleavage stimulation fa 99.5 2.6E-11 8.7E-16 123.5 34.7 210 371-617 195-411 (493)
145 3u3w_A Transcriptional activat 99.5 4.6E-13 1.6E-17 127.9 20.4 171 65-235 78-267 (293)
146 3q49_B STIP1 homology and U bo 99.5 1.2E-13 4.1E-18 115.0 13.9 119 23-141 4-127 (137)
147 1dce_A Protein (RAB geranylger 99.5 1.6E-13 5.4E-18 141.9 17.8 175 369-608 43-244 (567)
148 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 1.1E-14 3.9E-19 147.7 9.0 145 5-151 247-406 (457)
149 1hh8_A P67PHOX, NCF-2, neutrop 99.5 2E-13 6.7E-18 123.8 16.1 125 2-131 16-156 (213)
150 2uy1_A Cleavage stimulation fa 99.5 6.6E-11 2.3E-15 120.5 35.8 353 6-449 8-380 (493)
151 1na0_A Designed protein CTPR3; 99.5 4.4E-13 1.5E-17 109.5 16.3 118 27-144 8-125 (125)
152 3upv_A Heat shock protein STI1 99.5 3.3E-13 1.1E-17 110.2 15.3 102 59-160 1-102 (126)
153 3mv2_B Coatomer subunit epsilo 99.5 9.2E-13 3.1E-17 121.5 19.5 188 11-207 85-289 (310)
154 3sz7_A HSC70 cochaperone (SGT) 99.5 1.2E-13 4.1E-18 118.9 12.9 119 517-635 6-125 (164)
155 1dce_A Protein (RAB geranylger 99.5 2.3E-13 7.9E-18 140.7 17.2 178 39-223 39-244 (567)
156 3rkv_A Putative peptidylprolyl 99.5 1.3E-13 4.6E-18 118.4 12.9 118 26-143 9-145 (162)
157 1elw_A TPR1-domain of HOP; HOP 99.5 4.9E-13 1.7E-17 107.9 15.6 115 26-140 2-116 (118)
158 3gw4_A Uncharacterized protein 99.5 3E-13 1E-17 121.6 15.0 161 2-164 2-181 (203)
159 3u3w_A Transcriptional activat 99.5 1.1E-12 3.7E-17 125.3 19.3 171 30-201 77-267 (293)
160 2dba_A Smooth muscle cell asso 99.5 8.5E-13 2.9E-17 111.6 16.3 120 23-142 23-145 (148)
161 2lni_A Stress-induced-phosphop 99.5 5.6E-13 1.9E-17 110.3 14.8 122 517-640 11-133 (133)
162 2xev_A YBGF; tetratricopeptide 99.5 8.1E-13 2.8E-17 108.6 15.0 115 29-143 3-123 (129)
163 2hr2_A Hypothetical protein; a 99.5 2.4E-13 8.3E-18 111.0 10.9 102 522-623 11-135 (159)
164 3gw4_A Uncharacterized protein 99.5 1.6E-12 5.5E-17 116.8 17.5 160 39-199 3-175 (203)
165 2fbn_A 70 kDa peptidylprolyl i 99.5 8.9E-14 3E-18 124.2 8.9 126 32-157 8-149 (198)
166 1hxi_A PEX5, peroxisome target 99.5 4E-13 1.4E-17 108.1 11.4 100 523-622 18-117 (121)
167 2kck_A TPR repeat; tetratricop 99.4 6.1E-13 2.1E-17 106.1 10.8 106 25-130 3-111 (112)
168 2vyi_A SGTA protein; chaperone 99.4 2.8E-12 9.6E-17 105.7 14.2 125 56-187 6-130 (131)
169 3q49_B STIP1 homology and U bo 99.4 4.8E-12 1.6E-16 105.2 15.5 107 56-162 3-109 (137)
170 1zu2_A Mitochondrial import re 99.4 5.9E-13 2E-17 108.4 9.4 94 40-133 14-128 (158)
171 1elr_A TPR2A-domain of HOP; HO 99.4 1.4E-12 4.7E-17 107.5 11.6 116 26-142 2-124 (131)
172 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 3.4E-13 1.2E-17 136.9 8.7 147 40-193 246-407 (457)
173 3k9i_A BH0479 protein; putativ 99.4 5.8E-13 2E-17 106.8 7.9 90 42-131 4-96 (117)
174 3rkv_A Putative peptidylprolyl 99.4 1.6E-12 5.6E-17 111.5 11.0 104 521-624 10-131 (162)
175 1wao_1 Serine/threonine protei 99.4 2.2E-13 7.5E-18 138.7 6.4 129 26-154 4-134 (477)
176 1zu2_A Mitochondrial import re 99.4 6.8E-13 2.3E-17 108.1 7.6 91 5-97 15-126 (158)
177 3k9i_A BH0479 protein; putativ 99.4 1.2E-12 4.2E-17 104.9 9.2 102 4-105 2-104 (117)
178 1ihg_A Cyclophilin 40; ppiase 99.4 4.1E-12 1.4E-16 124.4 14.6 124 28-151 223-362 (370)
179 4b4t_Q 26S proteasome regulato 99.4 1.1E-11 3.8E-16 126.3 18.5 205 29-234 5-245 (434)
180 2kck_A TPR repeat; tetratricop 99.4 4.3E-12 1.5E-16 101.1 12.2 105 57-161 1-108 (112)
181 1wao_1 Serine/threonine protei 99.4 4.3E-13 1.5E-17 136.6 7.5 127 2-130 16-155 (477)
182 1na0_A Designed protein CTPR3; 99.4 2.6E-11 8.9E-16 98.8 16.6 121 58-185 4-125 (125)
183 2if4_A ATFKBP42; FKBP-like, al 99.4 7.8E-13 2.7E-17 128.4 8.5 135 26-160 177-329 (338)
184 4b4t_Q 26S proteasome regulato 99.4 1.2E-11 4E-16 126.2 17.0 200 2-201 14-246 (434)
185 2xev_A YBGF; tetratricopeptide 99.4 1E-11 3.5E-16 101.9 13.2 87 512-598 29-118 (129)
186 1elr_A TPR2A-domain of HOP; HO 99.3 7.2E-12 2.5E-16 103.2 10.7 107 520-626 2-115 (131)
187 1elw_A TPR1-domain of HOP; HOP 99.3 6.4E-11 2.2E-15 95.2 15.5 113 61-180 3-115 (118)
188 2if4_A ATFKBP42; FKBP-like, al 99.3 2.9E-12 1E-16 124.3 7.8 128 2-131 189-334 (338)
189 2dba_A Smooth muscle cell asso 99.3 1E-10 3.4E-15 98.7 15.3 104 57-160 23-129 (148)
190 3ro3_A PINS homolog, G-protein 99.3 4.8E-11 1.7E-15 102.6 13.1 134 27-160 8-159 (164)
191 3ro3_A PINS homolog, G-protein 99.3 1.8E-10 6.2E-15 98.9 16.3 146 63-237 10-161 (164)
192 2l6j_A TPR repeat-containing p 99.2 1.4E-11 4.8E-16 97.9 6.4 95 521-615 3-103 (111)
193 1ihg_A Cyclophilin 40; ppiase 99.2 6.3E-11 2.1E-15 116.0 11.4 123 522-646 223-362 (370)
194 2l6j_A TPR repeat-containing p 99.2 1.8E-11 6.1E-16 97.3 6.0 94 27-120 3-102 (111)
195 1na3_A Designed protein CTPR2; 99.2 1.1E-10 3.9E-15 88.5 9.8 86 519-604 6-91 (91)
196 2kat_A Uncharacterized protein 99.2 1.4E-10 4.9E-15 92.5 10.5 83 46-128 3-85 (115)
197 2kat_A Uncharacterized protein 99.2 3E-10 1E-14 90.6 11.8 97 9-107 2-100 (115)
198 1na3_A Designed protein CTPR2; 99.2 3.2E-10 1.1E-14 86.0 11.2 84 26-109 7-90 (91)
199 3ma5_A Tetratricopeptide repea 99.1 4.6E-10 1.6E-14 86.5 9.5 86 517-602 2-89 (100)
200 3ma5_A Tetratricopeptide repea 99.1 1.1E-09 3.7E-14 84.4 10.3 83 24-106 3-87 (100)
201 2kc7_A BFR218_protein; tetratr 99.0 4.5E-10 1.5E-14 86.7 7.0 91 32-130 4-95 (99)
202 1klx_A Cysteine rich protein B 98.9 1.8E-08 6E-13 82.8 14.1 112 5-126 8-127 (138)
203 2kc7_A BFR218_protein; tetratr 98.9 1.9E-09 6.4E-14 83.2 7.5 90 525-622 3-93 (99)
204 3u64_A Protein TP_0956; tetrat 98.9 2.9E-08 1E-12 88.8 15.4 128 517-651 147-295 (301)
205 3n71_A Histone lysine methyltr 98.9 9.8E-09 3.3E-13 103.3 13.5 132 472-617 315-462 (490)
206 1klx_A Cysteine rich protein B 98.9 4.1E-08 1.4E-12 80.6 14.1 111 42-160 9-127 (138)
207 3n71_A Histone lysine methyltr 98.8 5.8E-09 2E-13 104.9 9.1 121 40-160 321-465 (490)
208 3bee_A Putative YFRE protein; 98.8 4.2E-08 1.4E-12 73.1 9.2 72 24-95 2-76 (93)
209 3ly7_A Transcriptional activat 98.8 5E-07 1.7E-11 84.9 18.3 158 53-242 185-347 (372)
210 1pc2_A Mitochondria fission pr 98.7 7.3E-08 2.5E-12 77.5 10.3 95 6-102 12-111 (152)
211 3ly7_A Transcriptional activat 98.7 6.8E-07 2.3E-11 84.0 18.4 147 27-205 195-344 (372)
212 4g26_A Pentatricopeptide repea 98.7 5.3E-06 1.8E-10 84.4 25.1 165 31-234 29-204 (501)
213 3bee_A Putative YFRE protein; 98.7 1.4E-07 4.8E-12 70.3 9.9 72 58-129 2-76 (93)
214 4g26_A Pentatricopeptide repea 98.6 1E-06 3.4E-11 89.7 18.4 152 500-654 40-204 (501)
215 1pc2_A Mitochondria fission pr 98.6 3.3E-07 1.1E-11 73.7 11.5 93 44-136 14-111 (152)
216 3u64_A Protein TP_0956; tetrat 98.6 5E-06 1.7E-10 74.5 17.8 86 186-271 178-273 (301)
217 2v5f_A Prolyl 4-hydroxylase su 98.5 5.4E-07 1.8E-11 69.4 9.4 77 522-598 5-88 (104)
218 2v5f_A Prolyl 4-hydroxylase su 98.5 1.4E-06 4.9E-11 67.0 10.8 77 27-103 4-87 (104)
219 3qww_A SET and MYND domain-con 98.5 5.9E-07 2E-11 88.8 10.8 103 478-594 310-425 (433)
220 3qwp_A SET and MYND domain-con 98.4 6.4E-06 2.2E-10 81.7 16.4 96 531-658 296-404 (429)
221 3qww_A SET and MYND domain-con 98.4 9.6E-07 3.3E-11 87.3 10.2 91 42-132 312-423 (433)
222 3qwp_A SET and MYND domain-con 98.4 6.3E-07 2.1E-11 88.9 8.1 60 65-124 332-399 (429)
223 1nzn_A CGI-135 protein, fissio 98.2 1.4E-05 5E-10 61.5 9.8 74 26-99 33-111 (126)
224 4h7y_A Dual specificity protei 98.1 6.7E-05 2.3E-09 58.9 12.5 125 126-251 9-140 (161)
225 1nzn_A CGI-135 protein, fissio 98.1 6E-05 2.1E-09 58.1 11.6 94 43-136 16-114 (126)
226 4h7y_A Dual specificity protei 97.8 0.00056 1.9E-08 53.8 12.1 108 24-132 9-130 (161)
227 3ffl_A Anaphase-promoting comp 97.7 0.00015 5.3E-09 58.5 8.6 92 524-615 22-147 (167)
228 3ffl_A Anaphase-promoting comp 97.6 0.00044 1.5E-08 55.9 10.1 115 29-155 21-147 (167)
229 1y8m_A FIS1; mitochondria, unk 97.5 0.0015 5.1E-08 51.2 11.7 80 519-598 36-119 (144)
230 3o48_A Mitochondria fission 1 97.5 0.0012 4.1E-08 51.0 10.4 80 520-599 38-121 (134)
231 3lpz_A GET4 (YOR164C homolog); 97.5 0.067 2.3E-06 49.6 24.7 218 473-709 42-296 (336)
232 1y8m_A FIS1; mitochondria, unk 97.5 0.0032 1.1E-07 49.4 12.5 78 25-102 36-117 (144)
233 3o48_A Mitochondria fission 1 97.4 0.0015 5E-08 50.5 10.3 78 27-104 39-120 (134)
234 3txn_A 26S proteasome regulato 97.4 0.053 1.8E-06 52.2 23.2 233 29-262 20-279 (394)
235 4ady_A RPN2, 26S proteasome re 97.4 0.23 7.8E-06 53.3 36.7 45 10-54 52-96 (963)
236 3mkq_B Coatomer subunit alpha; 97.2 0.006 2E-07 50.5 11.8 100 532-650 15-114 (177)
237 4ady_A RPN2, 26S proteasome re 96.9 0.6 2.1E-05 50.2 33.7 188 59-249 67-272 (963)
238 3kae_A CDC27, possible protein 96.8 0.13 4.5E-06 41.2 17.1 158 472-656 39-239 (242)
239 3kae_A CDC27, possible protein 96.8 0.16 5.4E-06 40.8 18.8 119 4-132 14-150 (242)
240 3mkq_A Coatomer beta'-subunit; 96.7 0.043 1.5E-06 60.4 17.6 28 521-548 680-707 (814)
241 3txn_A 26S proteasome regulato 96.6 0.12 4.3E-06 49.6 18.0 172 63-235 20-211 (394)
242 4b4t_P 26S proteasome regulato 96.5 0.38 1.3E-05 47.7 21.5 197 4-200 28-247 (445)
243 4gns_B Protein CSD3, chitin bi 96.3 0.018 6E-07 60.5 10.7 115 41-155 261-396 (754)
244 4gns_B Protein CSD3, chitin bi 96.3 0.061 2.1E-06 56.5 14.7 111 8-121 265-396 (754)
245 3spa_A Mtrpol, DNA-directed RN 96.2 0.046 1.6E-06 58.7 13.0 101 520-620 125-231 (1134)
246 3mkq_B Coatomer subunit alpha; 96.1 0.46 1.6E-05 39.3 19.1 75 26-116 6-80 (177)
247 2wpv_A GET4, UPF0363 protein Y 96.1 0.83 2.8E-05 42.2 21.9 234 433-711 23-294 (312)
248 3spa_A Mtrpol, DNA-directed RN 96.1 0.036 1.2E-06 59.5 11.6 106 557-666 128-240 (1134)
249 3lvg_A Clathrin heavy chain 1; 96.0 7.5E-05 2.6E-09 71.5 -7.8 253 359-646 58-325 (624)
250 3mkq_A Coatomer beta'-subunit; 95.8 0.21 7E-06 55.0 17.1 44 73-121 663-706 (814)
251 1zbp_A Hypothetical protein VP 95.7 0.3 1E-05 43.3 14.0 60 72-131 7-66 (273)
252 4b4t_P 26S proteasome regulato 95.6 1.6 5.5E-05 43.3 21.0 199 369-585 30-247 (445)
253 3lvg_A Clathrin heavy chain 1; 95.1 1.8E-05 6E-10 75.7 -15.6 253 361-648 205-477 (624)
254 1ya0_A SMG-7 transcript varian 94.9 0.11 3.8E-06 51.9 9.7 80 524-603 154-233 (497)
255 1zbp_A Hypothetical protein VP 94.7 1.4 4.8E-05 39.2 15.1 122 36-164 5-134 (273)
256 4b4t_S RPN3, 26S proteasome re 94.7 0.2 6.9E-06 49.5 10.8 184 69-260 143-363 (523)
257 2ff4_A Probable regulatory pro 94.6 0.54 1.9E-05 45.7 14.0 91 70-160 123-235 (388)
258 1qsa_A Protein (soluble lytic 94.6 4.9 0.00017 41.6 32.9 124 139-266 223-347 (618)
259 2wpv_A GET4, UPF0363 protein Y 94.6 2.4 8.2E-05 39.1 17.1 129 474-611 21-155 (312)
260 3lpz_A GET4 (YOR164C homolog); 94.4 3.3 0.00011 38.5 17.5 129 475-612 21-158 (336)
261 4fhn_B Nucleoporin NUP120; pro 94.2 1.7 5.9E-05 49.3 18.8 145 33-189 817-989 (1139)
262 4b4t_R RPN7, 26S proteasome re 94.1 0.37 1.3E-05 47.7 11.6 99 132-234 133-237 (429)
263 1ya0_A SMG-7 transcript varian 94.0 0.31 1.1E-05 48.7 10.8 80 64-143 154-233 (497)
264 2ff4_A Probable regulatory pro 93.7 0.86 3E-05 44.3 13.2 90 34-123 121-232 (388)
265 4b4t_R RPN7, 26S proteasome re 93.6 0.25 8.4E-06 48.9 9.2 98 558-655 133-238 (429)
266 4fhn_B Nucleoporin NUP120; pro 91.4 1.5 5E-05 49.9 13.0 123 520-644 840-990 (1139)
267 1qsa_A Protein (soluble lytic 91.1 16 0.00054 37.8 39.7 24 692-715 585-608 (618)
268 4b4t_S RPN3, 26S proteasome re 91.0 1.3 4.5E-05 43.9 10.3 150 37-188 145-328 (523)
269 3esl_A Checkpoint serine/threo 79.3 11 0.00037 31.9 8.6 73 517-590 75-149 (202)
270 2qx5_A Nucleoporin NIC96; mRNA 78.9 65 0.0022 33.5 18.9 39 375-415 281-320 (661)
271 3esl_A Checkpoint serine/threo 73.2 41 0.0014 28.4 10.6 85 151-236 58-146 (202)
272 4a1g_A Mitotic checkpoint seri 73.0 9.9 0.00034 30.5 6.5 69 517-591 66-136 (152)
273 4gq2_M Nucleoporin NUP120; bet 71.7 53 0.0018 36.3 14.3 52 34-89 816-867 (950)
274 3t5v_B Nuclear mRNA export pro 71.2 26 0.00088 34.5 10.4 147 111-261 141-318 (455)
275 2wvi_A Mitotic checkpoint seri 68.7 13 0.00043 30.3 6.4 68 517-590 61-130 (164)
276 3iqu_A 14-3-3 protein sigma; s 68.2 61 0.0021 28.3 13.6 28 209-236 12-39 (236)
277 3ubw_A 14-3-3E, 14-3-3 protein 65.3 74 0.0025 28.2 13.6 172 208-417 34-227 (261)
278 2w2u_A Hypothetical P60 katani 63.9 6.2 0.00021 27.7 3.3 17 568-584 31-47 (83)
279 3ax2_A Mitochondrial import re 63.2 14 0.00047 25.1 4.7 30 562-591 23-52 (73)
280 3ax2_A Mitochondrial import re 62.4 22 0.00075 24.1 5.5 32 66-97 21-52 (73)
281 2v6y_A AAA family ATPase, P60 61.8 7.1 0.00024 27.5 3.3 31 539-584 9-39 (83)
282 4gq2_M Nucleoporin NUP120; bet 60.5 1.8E+02 0.0063 32.0 15.8 89 68-160 816-927 (950)
283 4aez_C MAD3, mitotic spindle c 60.4 17 0.0006 31.2 6.0 68 517-590 115-184 (223)
284 3uzd_A 14-3-3 protein gamma; s 57.4 1E+02 0.0034 27.1 15.6 28 209-236 8-35 (248)
285 2npm_A 14-3-3 domain containin 56.8 1.1E+02 0.0036 27.2 13.8 30 172-201 29-58 (260)
286 1wfd_A Hypothetical protein 15 56.5 53 0.0018 23.6 7.5 32 538-584 12-43 (93)
287 2rpa_A Katanin P60 ATPase-cont 56.0 19 0.00066 24.8 4.4 33 629-661 16-48 (78)
288 2wvi_A Mitotic checkpoint seri 53.5 90 0.0031 25.4 9.3 83 150-238 43-129 (164)
289 4a5x_A MITD1, MIT domain-conta 53.3 57 0.0019 23.0 7.1 32 630-661 21-52 (86)
290 3t5x_A PCI domain-containing p 51.5 41 0.0014 28.7 7.0 40 350-389 9-48 (203)
291 1o9d_A 14-3-3-like protein C; 50.7 1.3E+02 0.0046 26.6 15.0 28 174-201 11-38 (260)
292 2ijq_A Hypothetical protein; s 50.3 85 0.0029 25.4 8.1 59 32-90 36-103 (161)
293 2cwy_A Hypothetical protein TT 49.9 69 0.0024 23.1 7.5 31 629-661 45-75 (94)
294 3t5v_B Nuclear mRNA export pro 49.1 38 0.0013 33.3 7.1 66 524-589 178-254 (455)
295 1om2_A Protein (mitochondrial 47.7 26 0.00089 25.2 4.2 33 561-593 25-57 (95)
296 3bu8_A Telomeric repeat-bindin 47.3 71 0.0024 27.1 7.2 40 179-218 122-161 (235)
297 2w2u_A Hypothetical P60 katani 46.3 48 0.0016 23.2 5.4 29 631-659 25-53 (83)
298 1wy6_A Hypothetical protein ST 45.6 1.1E+02 0.0037 24.0 13.9 121 35-160 14-155 (172)
299 4a5x_A MITD1, MIT domain-conta 44.7 47 0.0016 23.5 5.2 26 357-382 18-43 (86)
300 3t5x_A PCI domain-containing p 44.4 43 0.0015 28.6 6.0 31 65-95 17-47 (203)
301 4b4t_O 26S proteasome regulato 44.4 2.2E+02 0.0076 27.3 12.0 69 131-199 128-197 (393)
302 2uwj_G Type III export protein 44.2 90 0.0031 22.7 8.0 26 521-546 67-92 (115)
303 2crb_A Nuclear receptor bindin 43.9 47 0.0016 23.6 4.8 27 206-232 16-42 (97)
304 2ijq_A Hypothetical protein; s 43.7 1.1E+02 0.0037 24.8 7.8 24 428-451 80-103 (161)
305 2v6y_A AAA family ATPase, P60 43.2 59 0.002 22.8 5.5 29 631-659 17-45 (83)
306 2br9_A 14-3-3E, 14-3-3 protein 42.9 1.7E+02 0.0058 25.5 14.7 41 360-400 10-51 (234)
307 3re2_A Predicted protein; meni 42.5 2.2E+02 0.0074 26.6 11.9 56 541-596 276-342 (472)
308 4a1g_A Mitotic checkpoint seri 42.4 1.3E+02 0.0045 24.1 10.6 52 504-555 83-134 (152)
309 1wfd_A Hypothetical protein 15 41.4 96 0.0033 22.3 6.6 31 631-661 21-51 (93)
310 1om2_A Protein (mitochondrial 41.4 68 0.0023 23.1 5.5 33 209-241 24-56 (95)
311 2npm_A 14-3-3 domain containin 41.0 1.9E+02 0.0066 25.6 14.5 42 359-400 32-77 (260)
312 2cpt_A SKD1 protein, vacuolar 40.7 22 0.00075 27.0 3.2 32 538-584 15-46 (117)
313 2v6x_A Vacuolar protein sortin 40.0 94 0.0032 21.8 7.4 17 568-584 25-41 (85)
314 2crb_A Nuclear receptor bindin 39.1 98 0.0034 22.0 5.8 25 357-381 17-41 (97)
315 4aez_C MAD3, mitotic spindle c 37.2 2E+02 0.0069 24.8 9.2 82 150-237 97-182 (223)
316 3u84_A Menin; MLL, JUND, ledgf 36.2 2.9E+02 0.01 26.4 12.7 56 541-596 298-364 (550)
317 2v6x_A Vacuolar protein sortin 35.4 1.1E+02 0.0039 21.3 6.2 30 631-660 19-48 (85)
318 3re2_A Predicted protein; meni 33.4 2.7E+02 0.0093 26.0 9.3 44 47-90 276-324 (472)
319 3iqu_A 14-3-3 protein sigma; s 32.2 2.5E+02 0.0087 24.4 14.4 54 360-413 13-68 (236)
320 3bu8_A Telomeric repeat-bindin 31.5 1.7E+02 0.006 24.8 7.2 37 563-599 121-157 (235)
321 1wy6_A Hypothetical protein ST 30.3 2E+02 0.0068 22.6 15.5 56 179-234 99-154 (172)
322 3mv2_A Coatomer subunit alpha; 30.3 3.3E+02 0.011 25.1 11.7 107 470-590 118-241 (325)
323 2vkj_A TM1634; membrane protei 29.5 1E+02 0.0036 21.5 4.6 22 69-90 60-81 (106)
324 2rpa_A Katanin P60 ATPase-cont 26.6 81 0.0028 21.7 3.8 27 208-234 15-41 (78)
325 2qx5_A Nucleoporin NIC96; mRNA 26.5 5.7E+02 0.019 26.6 16.6 43 175-217 447-489 (661)
326 2vkj_A TM1634; membrane protei 26.5 20 0.00068 25.0 0.8 47 26-72 51-100 (106)
327 2cpt_A SKD1 protein, vacuolar 26.5 2.1E+02 0.0072 21.6 6.5 29 631-659 24-52 (117)
328 4gq4_A Menin; tumor suppressor 25.8 4.5E+02 0.015 25.2 12.1 57 541-597 283-350 (489)
329 3u84_A Menin; MLL, JUND, ledgf 25.3 4.2E+02 0.014 25.4 9.2 27 63-89 319-345 (550)
330 2cfu_A SDSA1; SDS-hydrolase, l 24.7 87 0.003 32.8 5.6 52 62-113 449-500 (658)
331 2cwy_A Hypothetical protein TT 22.9 2.1E+02 0.0073 20.5 6.7 24 69-92 8-31 (94)
332 4gq4_A Menin; tumor suppressor 22.4 5.2E+02 0.018 24.8 9.9 45 46-90 282-331 (489)
333 2wb7_A PT26-6P; extra chromoso 21.0 5.4E+02 0.018 25.4 9.4 36 571-606 454-490 (526)
334 2d2s_A Exocyst complex compone 20.3 4.3E+02 0.015 23.0 9.7 26 137-162 25-50 (235)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.5e-43 Score=357.28 Aligned_cols=384 Identities=15% Similarity=0.065 Sum_probs=307.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcch
Q psy6603 33 MKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDL 112 (724)
Q Consensus 33 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~ 112 (724)
.+|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 35777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q psy6603 113 EGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVK 192 (724)
Q Consensus 113 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 192 (724)
++|+..|+++++.+|+++.++..+|.++...|++++|+..++++.+.. |+ ...++..+|.++...|++++|+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PD----LYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---TT----CTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----cHHHHHHHHHHHHHccCHHHHHH
Confidence 888888888888888888888888888888888888888777766543 33 44567777778888888888888
Q ss_pred HHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q psy6603 193 HLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKAT 272 (724)
Q Consensus 193 ~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (724)
.|++++...|+++.++..+|.++...|++++|+..|++++..+|++..++.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------------------- 207 (388)
T 1w3b_A 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI----------------------------- 207 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH-----------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH-----------------------------
Confidence 888888888877778888888888888888888888888777776554333
Q ss_pred ccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchh
Q psy6603 273 VPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPAS 352 (724)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 352 (724)
T Consensus 208 -------------------------------------------------------------------------------- 207 (388)
T 1w3b_A 208 -------------------------------------------------------------------------------- 207 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHH
Q psy6603 353 ALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKY 432 (724)
Q Consensus 353 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 432 (724)
.+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..++.+
T Consensus 208 -------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 208 -------NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280 (388)
T ss_dssp -------HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4555566667777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHH
Q psy6603 433 MLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQI 512 (724)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~ 512 (724)
+...|++++|+..|+++++.
T Consensus 281 ~~~~g~~~~A~~~~~~al~~------------------------------------------------------------ 300 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRL------------------------------------------------------------ 300 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHH------------------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHhh------------------------------------------------------------
Confidence 77777777777766666541
Q ss_pred hcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHH
Q psy6603 513 LTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQI 592 (724)
Q Consensus 513 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 592 (724)
.|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+
T Consensus 301 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a 375 (388)
T 1w3b_A 301 -----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375 (388)
T ss_dssp -----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred -----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 234555788888888889999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy6603 593 MRDLSLLQIQMR 604 (724)
Q Consensus 593 ~~~l~~~~~~~~ 604 (724)
+.++|.++..+|
T Consensus 376 ~~~lg~~~~~~~ 387 (388)
T 1w3b_A 376 YSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHhHHHHHHHcc
Confidence 999888776665
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.2e-43 Score=352.78 Aligned_cols=380 Identities=15% Similarity=0.139 Sum_probs=343.4
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
++..|++++|+..++++++ .+|+++.++..+|.++...|++++|...++++++.+|.++.+|..+|.++...|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 4678999999999999999 77899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQ 161 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 161 (724)
+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++.+..
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred cCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHH
Q psy6603 162 VTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLY 241 (724)
Q Consensus 162 ~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 241 (724)
|+ ...++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.+
T Consensus 166 --p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (388)
T 1w3b_A 166 --PN----FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp --TT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred --CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH
Confidence 44 677999999999999999999999999999999999999999999999999999999999999998876553
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHH
Q psy6603 242 YNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCK 321 (724)
Q Consensus 242 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (724)
+
T Consensus 240 ~------------------------------------------------------------------------------- 240 (388)
T 1w3b_A 240 H------------------------------------------------------------------------------- 240 (388)
T ss_dssp H-------------------------------------------------------------------------------
T ss_pred H-------------------------------------------------------------------------------
Confidence 3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy6603 322 IIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKH 401 (724)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 401 (724)
..+|.++...|++++|+..|+++++..|+++.++..+|.++..
T Consensus 241 -------------------------------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 241 -------------------------------------GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE 283 (388)
T ss_dssp -------------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 3556667778888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcc
Q psy6603 402 AGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGR 481 (724)
Q Consensus 402 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 481 (724)
.|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++
T Consensus 284 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------------------ 333 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE------------------------------ 333 (388)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT------------------------------
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------------------
Confidence 88888888888888888888888888888888888888888887777765
Q ss_pred hhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHH
Q psy6603 482 WGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHV 561 (724)
Q Consensus 482 ~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 561 (724)
..|.++.++..+|.++...|++++|+..|+++++.+|+++.+++.
T Consensus 334 -----------------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~ 378 (388)
T 1w3b_A 334 -----------------------------------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378 (388)
T ss_dssp -----------------------------------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred -----------------------------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHh
Confidence 234555688889999999999999999999999999999999999
Q ss_pred HHHHHhcccc
Q psy6603 562 YGLLQRSDKK 571 (724)
Q Consensus 562 l~~~~~~~~~ 571 (724)
+|.++..+|+
T Consensus 379 lg~~~~~~~~ 388 (388)
T 1w3b_A 379 MGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHccC
Confidence 9998887763
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-44 Score=382.27 Aligned_cols=458 Identities=11% Similarity=0.011 Sum_probs=374.0
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 105 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 105 (724)
.+...+..++..+.+.|++++|+..|++++...|++ ..+..+|.++...|++++|+..|++++.. |.++.++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 456777788888888888888888888888777754 56677888888888888888888877654 6667788888888
Q ss_pred HHHhcchHHHHHHHHHHHHhC----------------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChh
Q psy6603 106 QIQMRDLEGYRETRYQLFMLR----------------PTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFE 169 (724)
Q Consensus 106 ~~~~~~~~~A~~~~~~~l~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 169 (724)
+...|++++|+..|++..... |.+..+|..+|.+|...|++++|+..|+++.+.. |.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~---- 232 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD---AK---- 232 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT----
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ch----
Confidence 888888888888777532222 2246778888888888888888888888776654 32
Q ss_pred hHHHHHH--------------------------------------HHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHH
Q psy6603 170 HSELLLY--------------------------------------QSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY 211 (724)
Q Consensus 170 ~~~~~~~--------------------------------------~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 211 (724)
...++.. ++..+.+.|++++|+..|+++++. |.+..++..+
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l 311 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCK 311 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHH
Confidence 2223222 244556778888999999888877 6778888889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHH
Q psy6603 212 GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTE 290 (724)
Q Consensus 212 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (724)
+.++...|++++|+..|+++++.+|++..++..++.+ ...|++++|+..+++++...|...
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------ 373 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA------------------ 373 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH------------------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH------------------
Confidence 9999999999999999999998888888888887777 567888888888888776665541
Q ss_pred HHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCC
Q psy6603 291 IDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGD 370 (724)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 370 (724)
.++..+|.+|...|+
T Consensus 374 -----------------------------------------------------------------~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 374 -----------------------------------------------------------------VTWLAVGIYYLCVNK 388 (597)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHTTC
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHhcc
Confidence 145578999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhh
Q psy6603 371 TMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFT 450 (724)
Q Consensus 371 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 450 (724)
+++|+.+|+++++..|.++.+|..+|.++...|++++|++.|+++++..|.+..++..++.++...|++++|++.|++++
T Consensus 389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCch-hHHHHhhh
Q psy6603 451 REGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEH-GETLAMKG 529 (724)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~ 529 (724)
+..|... .....+|.++.+.|++++|++.|+++ ++... ..+..|.. ..+|..+|
T Consensus 469 ~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~~~~~---~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 469 ALFQYDP---------LLLNELGVVAFNKSDMQTAINHFQNA-------------LLLVK---KTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHCCCCH---------HHHHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHH---HSCCCSGGGHHHHHHHH
T ss_pred HhCCCCh---------HHHHHHHHHHHHhCCHHHHHHHHHHH-------------HHhhh---ccccchhhHHHHHHHHH
Confidence 8766532 12345899999999999998886654 22111 11234554 78999999
Q ss_pred hHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Q psy6603 530 LTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 601 (724)
Q Consensus 530 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 601 (724)
.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|++.|+++++++|+++.++..++.++.
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999987653
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-41 Score=360.49 Aligned_cols=474 Identities=12% Similarity=0.034 Sum_probs=372.9
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHH
Q psy6603 60 KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMA 139 (724)
Q Consensus 60 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 139 (724)
.+...|..++..+...|++++|+..|++++...|++ ..+..++.++...|++++|+..|++++.. |.++.++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 456778999999999999999999999999999965 67789999999999999999999988765 7788999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhccC------------CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhH
Q psy6603 140 YHLLHDFDMACNILEAFRKTQQVT------------NSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTV 207 (724)
Q Consensus 140 ~~~~g~~~~A~~~~~~~~~~~~~~------------p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 207 (724)
|.+.|++++|+.+|++ ..+.. ....+....++..+|.++.+.|++++|+..|+++++.+|++..+
T Consensus 160 ~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 9999999999999885 22221 00123477899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHH---HHHHHHHcCCcHH-HHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCcccccccccc
Q psy6603 208 EETYGALKLKLGQYNEAMKH---YESLIERNQENTL-YYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYV 282 (724)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~---~~~~~~~~p~~~~-~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (724)
+..++.++...+..+.+... +.+....++.... .+..++.. ...|++++|+..|++++.. |.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~----------- 304 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKS----------- 304 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC-----------
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cch-----------
Confidence 99988877655444433322 3333222222111 12222333 3457888888888887765 211
Q ss_pred CchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHH
Q psy6603 283 SGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLA 362 (724)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la 362 (724)
..++..++
T Consensus 305 ------------------------------------------------------------------------~~~~~~l~ 312 (597)
T 2xpi_A 305 ------------------------------------------------------------------------SDLLLCKA 312 (597)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 01344677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHH
Q psy6603 363 QHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEA 442 (724)
Q Consensus 363 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A 442 (724)
.++...|++++|+..|+++++..|.+..++..++.++...|++++|+..+++++...|.+..++..++.++.+.|++++|
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchh
Q psy6603 443 EETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHG 522 (724)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 522 (724)
++.|+++++..|.... .| ..++.++...|++++|++.|+++ +.. .|.+.
T Consensus 393 ~~~~~~~~~~~~~~~~-------~~--~~l~~~~~~~g~~~~A~~~~~~~-------------------~~~---~~~~~ 441 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGP-------AW--IGFAHSFAIEGEHDQAISAYTTA-------------------ARL---FQGTH 441 (597)
T ss_dssp HHHHHHHHHHCTTCHH-------HH--HHHHHHHHHHTCHHHHHHHHHHH-------------------HHT---TTTCS
T ss_pred HHHHHHHHHhCCCCHH-------HH--HHHHHHHHHcCCHHHHHHHHHHH-------------------HHh---Cccch
Confidence 8888888875554311 22 34677788888777777765544 323 34566
Q ss_pred HHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhh------cccc-HHHHHH
Q psy6603 523 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW------EHDN-IQIMRD 595 (724)
Q Consensus 523 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~ 595 (724)
.++..+|.++...|++++|++.|+++++.+|.++.+|..+|.++...|++++|++.|+++++. +|++ ..++..
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 788899999999999999999999999999988889999999999999999999999999887 5654 788899
Q ss_pred HHHHHHHhhhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHHHHhCChhHHHHHHHHHHHHH
Q psy6603 596 LSLLQIQMRDLEGYREGVSAMENLNEMQ-CMWFQTECALAYQRLGRWGDTLKKCHEVDRHF 655 (724)
Q Consensus 596 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 655 (724)
++.++...|++++|.+.++.+....|.. ..| ..+|.+|...|++++|++.|+++++..
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVH--TAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999888777654 555 668889999999999999999988763
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=9.2e-39 Score=338.08 Aligned_cols=464 Identities=13% Similarity=0.057 Sum_probs=288.3
Q ss_pred hhHHHHHHHhhCC-C-CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHH
Q psy6603 9 KNGLKFAKQILTN-P-KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYR 86 (724)
Q Consensus 9 ~~A~~~~~~~l~~-p-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 86 (724)
+.+...+..+... + ..+..++.++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 83 (537)
T 3fp2_A 4 MNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83 (537)
T ss_dssp ----CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCchHHhhcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444445555441 1 1122467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCC
Q psy6603 87 NALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSY 166 (724)
Q Consensus 87 ~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 166 (724)
++++.+|+++.++..+|.++...|++++|+..|+ ++..+|+....+. ..+...+...+|+..++......+.....
T Consensus 84 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 159 (537)
T 3fp2_A 84 KALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQ 159 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------C
T ss_pred HHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999999999999999999999995 8888887665542 24444555677777777655443221110
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHH--------HcCChHHHHHHHHHHHHHcCCc
Q psy6603 167 DFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKL--------KLGQYNEAMKHYESLIERNQEN 238 (724)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~~~~~~p~~ 238 (724)
..... .....+....+...++..+.+.....+........++.++. ..|++++|+..|+++++.+|++
T Consensus 160 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~ 235 (537)
T 3fp2_A 160 VLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD 235 (537)
T ss_dssp CCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCC
T ss_pred ccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 00011 11224555667777777776666666655545444444432 2346666666666666666665
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchh
Q psy6603 239 TLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTE 318 (724)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (724)
+..+..++.
T Consensus 236 ~~~~~~~~~----------------------------------------------------------------------- 244 (537)
T 3fp2_A 236 DPLRENAAL----------------------------------------------------------------------- 244 (537)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred chhhHHHHH-----------------------------------------------------------------------
Confidence 544333222
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy6603 319 KCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRI 398 (724)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 398 (724)
+++.+|.++...|++++|+..+++++..+|+ +.++..+|.+
T Consensus 245 --------------------------------------~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~ 285 (537)
T 3fp2_A 245 --------------------------------------ALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALT 285 (537)
T ss_dssp --------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHH
Confidence 3446677777788888888888888888887 7788888888
Q ss_pred HHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHh
Q psy6603 399 YKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQR 478 (724)
Q Consensus 399 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (724)
+...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.... ....+|.++..
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~ 356 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY---------PYIQLACLLYK 356 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH---------HHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHH
Confidence 888888888888888888888888777778888888888888888887777764443211 11223444444
Q ss_pred hcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccch
Q psy6603 479 LGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVC 558 (724)
Q Consensus 479 ~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 558 (724)
.|++++|+..+.++ +.. .|.++.++..+|.++...|++++|+..|+++++.+|.++..
T Consensus 357 ~g~~~~A~~~~~~~-------------------~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 357 QGKFTESEAFFNET-------------------KLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp TTCHHHHHHHHHHH-------------------HHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred cCCHHHHHHHHHHH-------------------HHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 44444444433322 222 23334456666666666666666666666666655554442
Q ss_pred ------HHHHHHHHhcc----------ccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhh
Q psy6603 559 ------WHVYGLLQRSD----------KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNE 621 (724)
Q Consensus 559 ------~~~l~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 621 (724)
+..+|.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|.+.++.+....|
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 23344555555 6666666666666666666666655555544444444444444444444433
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-38 Score=330.48 Aligned_cols=428 Identities=11% Similarity=0.012 Sum_probs=348.6
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 106 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 106 (724)
.++.+..+|.+++..|++++|+..|++++..+| ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999 5889999999999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH-------------------------------
Q psy6603 107 IQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEA------------------------------- 155 (724)
Q Consensus 107 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~------------------------------- 155 (724)
...|++++|+..|++++...|.+...................+...+..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999999999987655444333333322222222211110
Q ss_pred ---HHHhhccCCC----CChhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHhh-----h---------hccHhhHHHHH
Q psy6603 156 ---FRKTQQVTNS----YDFEHSELLLYQSMVIQD---SGDLEEAVKHLDRFKE-----Q---------IHDKLTVEETY 211 (724)
Q Consensus 156 ---~~~~~~~~p~----~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~~~~-----~---------~p~~~~~~~~l 211 (724)
........+. ..+.....++.+|.++.. .|++++|+..|++++. . .|.++.++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1111111110 012347778888888876 8999999999999988 4 36677889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHH
Q psy6603 212 GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTE 290 (724)
Q Consensus 212 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (724)
|.++...|++++|+..|+++++..|+ ..++..++.+ ...|++++|+..+++++...|....
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------- 305 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS----------------- 305 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH-----------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH-----------------
Confidence 99999999999999999999999998 8888888887 5678888888888888776665421
Q ss_pred HHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCC
Q psy6603 291 IDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGD 370 (724)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 370 (724)
++..+|.++...|+
T Consensus 306 ------------------------------------------------------------------~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 306 ------------------------------------------------------------------VYYHRGQMNFILQN 319 (514)
T ss_dssp ------------------------------------------------------------------HHHHHHHHHHHTTC
T ss_pred ------------------------------------------------------------------HHHHHHHHHHHhCC
Confidence 34477888888888
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhh
Q psy6603 371 TMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFT 450 (724)
Q Consensus 371 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 450 (724)
+++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999998888888888888889888888999999999999888888888888888888888888888888888876
Q ss_pred hcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhh
Q psy6603 451 REGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGL 530 (724)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 530 (724)
...|... .......++..+|.
T Consensus 400 ~~~~~~~-----------------------------------------------------------~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 400 ELENKLD-----------------------------------------------------------GIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHTSS-----------------------------------------------------------SCSSCSHHHHHHHH
T ss_pred Hhhhccc-----------------------------------------------------------hHHHHHHHHHHHHH
Confidence 5332211 11122448999999
Q ss_pred Hhhh---cCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHH
Q psy6603 531 TLNC---LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 598 (724)
Q Consensus 531 ~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 598 (724)
++.. .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+..
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999999999998887744
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=9.5e-37 Score=322.66 Aligned_cols=438 Identities=11% Similarity=0.033 Sum_probs=346.6
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
++..|+|++|+..|++++. .+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 35 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 112 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIE--LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA 112 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHH
Confidence 4678999999999999999 77889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRA---SWIGFAMAYHLLHDFDMACNILEAFRK 158 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~ 158 (724)
+..|+ ++..+|+....+. ..+...+....|+..+++++...|.... ........+....+...++..+..
T Consensus 113 ~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 185 (537)
T 3fp2_A 113 MFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT--- 185 (537)
T ss_dssp HHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC---
T ss_pred HHHHH-HHhcCCCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh---
Confidence 99996 8888888766543 3455667778899999999887664321 112223345556666665533221
Q ss_pred hhccCCCCChhhHHHHHHHHH--------HHHHcCCHHHHHHHHHHHhhhhccHhh-------HHHHHHHHHHHcCChHH
Q psy6603 159 TQQVTNSYDFEHSELLLYQSM--------VIQDSGDLEEAVKHLDRFKEQIHDKLT-------VEETYGALKLKLGQYNE 223 (724)
Q Consensus 159 ~~~~~p~~~~~~~~~~~~~~~--------~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~la~~~~~~g~~~~ 223 (724)
.. ...+........++. .....|++++|+..|+++++..|+++. ++..+|.++...|++++
T Consensus 186 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 186 SS----NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp CC----SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cc----ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 11 111222233333333 333456899999999999999998754 57788899999999999
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcC
Q psy6603 224 AMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKG 302 (724)
Q Consensus 224 A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (724)
|+..|++++..+|+ ...+..++.+ ...|++++|+..+++++...|....
T Consensus 262 A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------------------- 311 (537)
T 3fp2_A 262 AQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP----------------------------- 311 (537)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH-----------------------------
T ss_pred HHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH-----------------------------
Confidence 99999999999999 8889999998 5679999999999999888776411
Q ss_pred CchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy6603 303 VPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAI 382 (724)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 382 (724)
++..+|.++...|++++|+..+++++
T Consensus 312 ------------------------------------------------------~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 312 ------------------------------------------------------TYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45588999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhH
Q psy6603 383 DHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNE 462 (724)
Q Consensus 383 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 462 (724)
...|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|......
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-- 415 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH-- 415 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS--
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999887544322111
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhc-------
Q psy6603 463 MQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCL------- 535 (724)
Q Consensus 463 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 535 (724)
.....+..+|.++...
T Consensus 416 ---------------------------------------------------------~~~~~~~~~a~~~~~~~~~~~~~ 438 (537)
T 3fp2_A 416 ---------------------------------------------------------VGIGPLIGKATILARQSSQDPTQ 438 (537)
T ss_dssp ---------------------------------------------------------STTHHHHHHHHHHHHHHTC----
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHHHhhccchh
Confidence 1122356667777777
Q ss_pred ---CChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHH
Q psy6603 536 ---GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 595 (724)
Q Consensus 536 ---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 595 (724)
|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++......
T Consensus 439 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 439 LDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999877553
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=8.7e-36 Score=307.56 Aligned_cols=367 Identities=15% Similarity=0.104 Sum_probs=283.5
Q ss_pred hhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHH
Q psy6603 8 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRN 87 (724)
Q Consensus 8 ~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 87 (724)
...+...+..++. .+|.++.+++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus 8 ~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYF--QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccc--ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445566677777 77889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCC
Q psy6603 88 ALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQR---ASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 88 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p 164 (724)
+++.+|+++.++..+|.++...|++++|+..|+++++.+|.+. .++..++.++.
T Consensus 86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------- 142 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE----------------------- 142 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-----------------------
Confidence 9999999999999999999999999999999999999999988 77777765432
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHH
Q psy6603 165 SYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNK 244 (724)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 244 (724)
...+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|+++++.+|+++.++.
T Consensus 143 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~- 215 (450)
T 2y4t_A 143 ------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY- 215 (450)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHH-
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-
Confidence 1234456778888999999999999999999999999999999999999999999999999888776654333
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHH
Q psy6603 245 LVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQ 324 (724)
Q Consensus 245 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 324 (724)
T Consensus 216 -------------------------------------------------------------------------------- 215 (450)
T 2y4t_A 216 -------------------------------------------------------------------------------- 215 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC
Q psy6603 325 DLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGD 404 (724)
Q Consensus 325 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~ 404 (724)
.+|.++...|++++|+..+++++...|+++..+..++.+..
T Consensus 216 -----------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~---- 256 (450)
T 2y4t_A 216 -----------------------------------KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK---- 256 (450)
T ss_dssp -----------------------------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----
T ss_pred -----------------------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----
Confidence 45555666677777777777777777777666655532210
Q ss_pred HHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhh
Q psy6603 405 VLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGD 484 (724)
Q Consensus 405 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 484 (724)
......++.++...|++++|+..|+++++..|..
T Consensus 257 ------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------------------- 290 (450)
T 2y4t_A 257 ------------------LNKLIESAEELIRDGRYTDATSKYESVMKTEPSI---------------------------- 290 (450)
T ss_dssp ------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS----------------------------
T ss_pred ------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc----------------------------
Confidence 0011123444444555555555554444322210
Q ss_pred hhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCc-hhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHH
Q psy6603 485 TLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAE-HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYG 563 (724)
Q Consensus 485 A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 563 (724)
+. ...++..+|.++...|++++|+..++++++.+|+++.+|..+|
T Consensus 291 ----------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 291 ----------------------------------AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ----------------------------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 00 1236888899999999999999999999999999999999999
Q ss_pred HHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhh
Q psy6603 564 LLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 605 (724)
Q Consensus 564 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 605 (724)
.++...|++++|+..|+++++++|+++.++..++.+....++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999987766655
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-36 Score=316.56 Aligned_cols=448 Identities=16% Similarity=0.085 Sum_probs=319.3
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy6603 61 SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140 (724)
Q Consensus 61 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 140 (724)
....+..+|..+...|++++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999 6899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCC
Q psy6603 141 HLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQ 220 (724)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 220 (724)
...|++++|+..|+++.+..+.++. ...............+...+++..++.+... |+........+..-. ...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~ 157 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDA----SIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKERKDK-QEN 157 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGG----GTHHHHHHHHHHHHHHHHTTC-----------------------------C
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCChhhHHHhh-ccC
Confidence 9999999999999988776532221 1111111111111112222222222211111 111000000000000 000
Q ss_pred hHHH--HHHHHHHHHH--------cCCcHHHHHHHHHH-hc---cCChHHHHHHHHHHHH-----h--CCCCCccccccc
Q psy6603 221 YNEA--MKHYESLIER--------NQENTLYYNKLVEA-KQ---LTNNDDIFQLLTHYIS-----K--YPKATVPKRLSL 279 (724)
Q Consensus 221 ~~~A--~~~~~~~~~~--------~p~~~~~~~~l~~~-~~---~~~~~~a~~~~~~~~~-----~--~~~~~~~~~~~~ 279 (724)
.... ...+...... .|++...+...+.. +. .|++++|+..+++++. . .|......
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---- 233 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK---- 233 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH----
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC----
Confidence 0000 0000000000 13445555555554 32 5666666666666666 3 44433210
Q ss_pred cccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHH
Q psy6603 280 NYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYH 359 (724)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (724)
.....+++
T Consensus 234 ------------------------------------------------------------------------~~~~~~~~ 241 (514)
T 2gw1_A 234 ------------------------------------------------------------------------EKLAISLE 241 (514)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------hHHHHHHH
Confidence 00011455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCH
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLI 439 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~ 439 (724)
.+|.++...|++++|+..++++++..|. +.++..+|.++...|++++|+..+++++..+|.+..++..++.++...|++
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 7788888889999999999999888888 888888899999999999999999999888888888888888888889999
Q ss_pred HHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCC
Q psy6603 440 KEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYA 519 (724)
Q Consensus 440 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 519 (724)
++|+..++++++..|.... ....+|.++...|++++|+..+.++ +... |
T Consensus 321 ~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~-------------------~~~~---~ 369 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPENIF---------PYIQLACLAYRENKFDDCETLFSEA-------------------KRKF---P 369 (514)
T ss_dssp THHHHHHHHHHHTCSSCSH---------HHHHHHHHTTTTTCHHHHHHHHHHH-------------------HHHS---T
T ss_pred HHHHHHHHHHHHhChhhHH---------HHHHHHHHHHHcCCHHHHHHHHHHH-------------------HHHc---c
Confidence 9999999888876665321 2234677777777777777665543 3333 3
Q ss_pred chhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccc------hHHHHHHHHhc---cccHHHHHHHHHHHhhhccccH
Q psy6603 520 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV------CWHVYGLLQRS---DKKYDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 520 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p~~~ 590 (724)
.++.++..+|.++...|++++|+..|+++++.+|+++. ++..+|.++.. .|++++|+..|+++++.+|+++
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH
Confidence 45568999999999999999999999999999888866 89999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh
Q psy6603 591 QIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ 623 (724)
Q Consensus 591 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 623 (724)
.++..+|.++...|++++|.+.++.+....|..
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999988888766
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.2e-32 Score=274.95 Aligned_cols=323 Identities=12% Similarity=0.100 Sum_probs=286.6
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 106 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 106 (724)
+++.++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHHHHhCC---CchhHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhH
Q psy6603 107 IQMRDLEGYRETRYQLFMLRP---TQRASWIGF------------AMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHS 171 (724)
Q Consensus 107 ~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 171 (724)
...|++++|+..|+++++.+| +++.++..+ |.++...|++++|+..++++.+.. |. ..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~----~~ 154 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VW----DA 154 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT----CH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC----ch
Confidence 999999999999999999999 888888777 789999999999999998887765 33 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHH------
Q psy6603 172 ELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKL------ 245 (724)
Q Consensus 172 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l------ 245 (724)
.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|++...+..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999988765433
Q ss_pred ------HHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchh
Q psy6603 246 ------VEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTE 318 (724)
Q Consensus 246 ------~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (724)
+.+ ...|++++|+..+++++...|....
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------------------------------- 269 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE--------------------------------------------- 269 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH---------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH---------------------------------------------
Confidence 444 4568888888888888777766411
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q psy6603 319 KCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRI 398 (724)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~ 398 (724)
....++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 270 ----------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 270 ----------------------------------YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 1112455788899999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHH
Q psy6603 399 YKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLR 435 (724)
Q Consensus 399 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 435 (724)
+...|++++|+..|+++++++|++..+...++.+...
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999988887777766554
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.6e-32 Score=274.00 Aligned_cols=341 Identities=15% Similarity=0.093 Sum_probs=264.2
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy6603 61 SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140 (724)
Q Consensus 61 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 140 (724)
++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCC
Q psy6603 141 HLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQ 220 (724)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 220 (724)
...|++++|+..++++.+.. |. ......++..++.+.. ...+..+|.++...|+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN---PS-EQEEKEAESQLVKADE----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC---CC-HHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhcC---Cc-ccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHHccC
Confidence 99999999999998876654 41 0024555555544322 1234556777778888
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhh
Q psy6603 221 YNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFH 300 (724)
Q Consensus 221 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (724)
+++|+..++++++..|+++.++.
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 158 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRE--------------------------------------------------------- 158 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHH---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCchHHHH---------------------------------------------------------
Confidence 88888888888887776554332
Q ss_pred cCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy6603 301 KGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINA 380 (724)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 380 (724)
.+|.++...|++++|+..+++
T Consensus 159 -----------------------------------------------------------~~~~~~~~~~~~~~A~~~~~~ 179 (359)
T 3ieg_A 159 -----------------------------------------------------------LRAECFIKEGEPRKAISDLKA 179 (359)
T ss_dssp -----------------------------------------------------------HHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------------------------------------------------HHHHHHHHCCCHHHHHHHHHH
Confidence 444445556666666666666
Q ss_pred HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhh------------hHHHHHHHcCCHHHHHHHHHH
Q psy6603 381 AIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINS------------KCAKYMLRANLIKEAEETCSK 448 (724)
Q Consensus 381 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~g~~~~A~~~~~~ 448 (724)
+++..|.++.++..+|.++...|++++|+..++++++.+|++...+. ..|.++...|++++|+..+++
T Consensus 180 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 259 (359)
T 3ieg_A 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 259 (359)
T ss_dssp HHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666544332 235556666666666666666
Q ss_pred hhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCc-hhHHHHh
Q psy6603 449 FTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAE-HGETLAM 527 (724)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~ 527 (724)
+++..|.. +. ...++..
T Consensus 260 ~~~~~~~~--------------------------------------------------------------~~~~~~~~~~ 277 (359)
T 3ieg_A 260 VMKTEPSV--------------------------------------------------------------AEYTVRSKER 277 (359)
T ss_dssp HHHHCCSS--------------------------------------------------------------HHHHHHHHHH
T ss_pred HHhcCCCc--------------------------------------------------------------hHHHHHHHHH
Confidence 65433321 11 1235778
Q ss_pred hhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhh
Q psy6603 528 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 605 (724)
Q Consensus 528 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 605 (724)
+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.++..+++
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988776654
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1e-32 Score=284.63 Aligned_cols=376 Identities=13% Similarity=0.072 Sum_probs=262.8
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
++..|++++|+..|++++. .+|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|
T Consensus 36 ~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVD--GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 4578999999999999999 67788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcH---HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy6603 82 IKCYRNALKWEHDNI---QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRK 158 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 158 (724)
+..|++++..+|++. .++..++.++.. ..+..+|.++...|++++|+..++++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEM----------------------QRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999998 877777555321 1223334444555555555555555444
Q ss_pred hhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCc
Q psy6603 159 TQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQEN 238 (724)
Q Consensus 159 ~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 238 (724)
.. |. ...++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++...|++
T Consensus 172 ~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 244 (450)
T 2y4t_A 172 VC---VW----DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244 (450)
T ss_dssp HC---TT----CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hC---CC----ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh
Confidence 32 21 334455555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHH------------HHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCch
Q psy6603 239 TLYYNKL------------VEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPP 305 (724)
Q Consensus 239 ~~~~~~l------------~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (724)
...+..+ +.. ...|++++|+..|++++...|....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------------------------------- 292 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE-------------------------------- 292 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH--------------------------------
Confidence 5544333 333 3446666666666666555544311
Q ss_pred hhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy6603 306 LFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHT 385 (724)
Q Consensus 306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 385 (724)
....++..+|.++...|++++|+..++++++..
T Consensus 293 -----------------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 293 -----------------------------------------------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred -----------------------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 001145578888889999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHH------------HHHcC-----CHHHHHHHHHH
Q psy6603 386 PTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKY------------MLRAN-----LIKEAEETCSK 448 (724)
Q Consensus 386 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~g-----~~~~A~~~~~~ 448 (724)
|+++.++..+|.++...|++++|+..|+++++++|++..++..++.+ +...| ..+++.+.|++
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999988887777744 33344 56677888886
Q ss_pred -hhhcccCccCChhH-HHHHHHHHHHHHHHHhhcchhhhhh
Q psy6603 449 -FTREGVSAMENLNE-MQCMWFQTECALAYQRLGRWGDTLK 487 (724)
Q Consensus 449 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 487 (724)
+++..|........ .........++.+|..+++.+.+..
T Consensus 406 ~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 406 LALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp HHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 66666655443220 1111223346777777777665543
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=5e-34 Score=296.20 Aligned_cols=413 Identities=11% Similarity=0.044 Sum_probs=285.0
Q ss_pred cchhhHHHHHHHhh----CCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---------CCCchhHHHHHHHHH
Q psy6603 6 KQYKNGLKFAKQIL----TNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN---------DLKSHVCWHVYGLLQ 72 (724)
Q Consensus 6 ~~~~~A~~~~~~~l----~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------~p~~~~~~~~lg~~~ 72 (724)
++.+.++..++..+ +.-..+..+..+..+|.++...|++++|++.|++++++ +|....+|.++|.+|
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH
Confidence 44555555555433 21123344677889999999999999999999999875 566677899999999
Q ss_pred hhcCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy6603 73 RSDKKYDEAIKCYRNALKWE--------HDNIQIMRDLSLLQIQM--RDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL 142 (724)
Q Consensus 73 ~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 142 (724)
..+|++++|+.+|++++++. +..+.++..+|.++... +++++|+.+|+++++++|+++.++..++.++..
T Consensus 105 ~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~ 184 (472)
T 4g1t_A 105 YHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR 184 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999863 45678888888877765 479999999999999999999999999988654
Q ss_pred ---cCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHH
Q psy6603 143 ---LHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD----SGDLEEAVKHLDRFKEQIHDKLTVEETYGALK 215 (724)
Q Consensus 143 ---~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 215 (724)
.++.++|+..++++++.. |. ...++..+|..+.. .|++++|+..+++++..+|.++.++..+|.++
T Consensus 185 l~~~~~~~~al~~~~~al~l~---p~----~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~ 257 (472)
T 4g1t_A 185 LDNWPPSQNAIDPLRQAIRLN---PD----NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFY 257 (472)
T ss_dssp HHHSCCCCCTHHHHHHHHHHC---SS----CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHhhcC---Cc----chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 567788888887766654 54 44566666655544 56788999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHH
Q psy6603 216 LKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYL 295 (724)
Q Consensus 216 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (724)
...|++++|+..|+++++.+|+++.++..++.++... ....
T Consensus 258 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~-----------~~~~---------------------------- 298 (472)
T 4g1t_A 258 RRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK-----------VFQV---------------------------- 298 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-----------HHHH----------------------------
T ss_pred HHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH-----------HHHh----------------------------
Confidence 9999999999999999999999999998888763200 0000
Q ss_pred HhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHH
Q psy6603 296 RHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKAL 375 (724)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 375 (724)
. .. .....+......+.+++|+
T Consensus 299 -----------------------------------~-~~----------------------~~~~~~~~~~~~~~~~~A~ 320 (472)
T 4g1t_A 299 -----------------------------------M-NL----------------------RENGMYGKRKLLELIGHAV 320 (472)
T ss_dssp -----------------------------------H-HC----------------------------CHHHHHHHHHHHH
T ss_pred -----------------------------------h-hH----------------------HHHHHHHHHHHHhhHHHHH
Confidence 0 00 0001111111234567899
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchh---hhhhHHHH-HHHcCCHHHHHHHHHHhhh
Q psy6603 376 NYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRY---INSKCAKY-MLRANLIKEAEETCSKFTR 451 (724)
Q Consensus 376 ~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~-~~~~g~~~~A~~~~~~~~~ 451 (724)
..++++++.+|.++.++..+|.++...|++++|+.+|+++++++|++.. ++..++.+ ....|++++|+..|.++++
T Consensus 321 ~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998876532 23334433 3455667777777776665
Q ss_pred cccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhH
Q psy6603 452 EGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLT 531 (724)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 531 (724)
..|... ..
T Consensus 401 i~~~~~-----------------------------------------------------------------~~------- 408 (472)
T 4g1t_A 401 INQKSR-----------------------------------------------------------------EK------- 408 (472)
T ss_dssp SCCCCH-----------------------------------------------------------------HH-------
T ss_pred cCcccH-----------------------------------------------------------------HH-------
Confidence 443320 00
Q ss_pred hhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHH
Q psy6603 532 LNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 597 (724)
Q Consensus 532 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 597 (724)
.+....+...++++++.+|.++.+|..+|.++...|++++|+++|++|++++|.+|.+...+|
T Consensus 409 ---~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 409 ---EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp ---HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred ---HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 011223445667778888888888888888888888888888888888888888887776665
No 14
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-31 Score=275.87 Aligned_cols=379 Identities=16% Similarity=0.112 Sum_probs=242.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy6603 63 VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL 142 (724)
Q Consensus 63 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 142 (724)
..+..+|.++..+|++++|+++|++++++.+.. .....+|....++.++|.+|..
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~-------------------------~~~~~~~~~~~~~~nla~~y~~ 106 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQE-------------------------HADQAEIRSLVTWGNYAWVYYH 106 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------------------------SGGGCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc-------------------------CccccchHHHHHHHHHHHHHHH
Confidence 345566666666677777777766666541100 0001134445566667777777
Q ss_pred cCCHHHHHHHHHHHHHhhccCCC-CChhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHhhhhccHhhHHHHHHHHHH---
Q psy6603 143 LHDFDMACNILEAFRKTQQVTNS-YDFEHSELLLYQSMVIQDS--GDLEEAVKHLDRFKEQIHDKLTVEETYGALKL--- 216 (724)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~--- 216 (724)
+|++++|+..++++.+..+..++ .....+.++..+|.++... +++++|+.+|+++++.+|+++.++..++.++.
T Consensus 107 ~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 186 (472)
T 4g1t_A 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 77777777777666655443322 1233567777788777664 57999999999999999999999999988854
Q ss_pred HcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHh-----ccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHH
Q psy6603 217 KLGQYNEAMKHYESLIERNQENTLYYNKLVEAK-----QLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEI 291 (724)
Q Consensus 217 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (724)
..++.++|+..|+++++++|+++.++..++..+ ..+++++|...+++++...|...
T Consensus 187 ~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~------------------- 247 (472)
T 4g1t_A 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT------------------- 247 (472)
T ss_dssp HSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCH-------------------
T ss_pred CchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH-------------------
Confidence 457889999999999999999999888887653 23677888888888877766652
Q ss_pred HHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCH
Q psy6603 292 DKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDT 371 (724)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 371 (724)
.++..+|.+|...|++
T Consensus 248 ----------------------------------------------------------------~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 248 ----------------------------------------------------------------DVLRSAAKFYRRKDEP 263 (472)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHTTCH
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHHcCch
Confidence 1445889999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC-------------------CHHHHHHHHHHHHccCccchhhhhhHHHH
Q psy6603 372 MKALNYINAAIDHTPTLIELFVTKGRIYKHAG-------------------DVLEAYKWLDEAQSLDTADRYINSKCAKY 432 (724)
Q Consensus 372 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 432 (724)
++|+..++++++..|+++.++..+|.++...+ .+++|+..++++++++|.+...+..+|.+
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 264 DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHH
Confidence 99999999999999999999999998886532 24455555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHH
Q psy6603 433 MLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQI 512 (724)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~ 512 (724)
+...|++++|+..|++++...+..
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~-------------------------------------------------------- 367 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTP-------------------------------------------------------- 367 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCH--------------------------------------------------------
T ss_pred HHHhccHHHHHHHHHHHHhcCCCC--------------------------------------------------------
Confidence 555555555555555554422211
Q ss_pred hcCCCCCchhHHHHhhhhH-hhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHH
Q psy6603 513 LTNPKYAEHGETLAMKGLT-LNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 591 (724)
Q Consensus 513 ~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 591 (724)
.....++..+|.+ +...|++++|+..|+++++++|++... .+....+...+++++..+|+++.
T Consensus 368 ------~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~----------~~~~~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 368 ------VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK----------EKMKDKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp ------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH----------HHHHHHHHHHHHHHHHHCC-CTT
T ss_pred ------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH----------HHHHHHHHHHHHHHHHhCCCCHH
Confidence 1111234444433 345677777777777777777766432 22334455667777777777777
Q ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHhhhh
Q psy6603 592 IMRDLSLLQIQMRDLEGYREGVSAMENLNE 621 (724)
Q Consensus 592 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 621 (724)
++..||.++...|++++|++.|++++...+
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 777777777777777777777776665543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-30 Score=254.89 Aligned_cols=303 Identities=13% Similarity=0.078 Sum_probs=258.5
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 102 (724)
..|.+++.+..+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-chHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH
Q psy6603 103 SLLQIQMR-DLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVI 181 (724)
Q Consensus 103 a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 181 (724)
|.++...| ++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++.+..+. ....+..+|.++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~l~~~~ 169 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-------CHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-------CSHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-------cHHHHHHHHHHH
Confidence 99999999 8999999999999999999999999999999999999999888887776532 345677788888
Q ss_pred HHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHH
Q psy6603 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLL 261 (724)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~ 261 (724)
...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|....
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------- 228 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN--------------------- 228 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC---------------------
T ss_pred HHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc---------------------
Confidence 89999999999999999888888888888999999999998888888888876542110
Q ss_pred HHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCC
Q psy6603 262 THYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFS 341 (724)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (724)
.
T Consensus 229 ---------~---------------------------------------------------------------------- 229 (330)
T 3hym_B 229 ---------E---------------------------------------------------------------------- 229 (330)
T ss_dssp ---------S----------------------------------------------------------------------
T ss_pred ---------c----------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q psy6603 342 LQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA 421 (724)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 421 (724)
...+... .++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|+.+|+++++++|+
T Consensus 230 -----~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 230 -----VTVDKWE--PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp -----CTTTTCC--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred -----ccccHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 0001111 145588999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhHHHHH-HHcCCH
Q psy6603 422 DRYINSKCAKYM-LRANLI 439 (724)
Q Consensus 422 ~~~~~~~~~~~~-~~~g~~ 439 (724)
+..++..++.++ ...|+.
T Consensus 303 ~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC-
T ss_pred chHHHHHHHHHHHHHhCch
Confidence 999998888887 455543
No 16
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=7.8e-29 Score=259.75 Aligned_cols=397 Identities=12% Similarity=0.077 Sum_probs=263.9
Q ss_pred HHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCch
Q psy6603 51 VRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQR 130 (724)
Q Consensus 51 ~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 130 (724)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|.++.+|..++......|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 567777888888888887774 6678888888888888888888888888888888888888888888888888888 46
Q ss_pred hHHHHHHHH-HHHcCCHHHHHH----HHHHHHHhhccCCCCChhhHHHHHHHHHHHHH---------cCCHHHHHHHHHH
Q psy6603 131 ASWIGFAMA-YHLLHDFDMACN----ILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD---------SGDLEEAVKHLDR 196 (724)
Q Consensus 131 ~~~~~la~~-~~~~g~~~~A~~----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---------~g~~~~A~~~~~~ 196 (724)
..|..++.. ....|++++|.+ +|++++...+.+|. ...+|...+..... .|++++|..+|++
T Consensus 80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM----SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT----CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc----cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 677777753 344566666554 66666666555443 45677766666654 7899999999999
Q ss_pred HhhhhccHh--hHHHHHHHHHH-------------HcCChHHHHHHHHHH------HHH-----cCCcHHHHHHHHHHhc
Q psy6603 197 FKEQIHDKL--TVEETYGALKL-------------KLGQYNEAMKHYESL------IER-----NQENTLYYNKLVEAKQ 250 (724)
Q Consensus 197 ~~~~~p~~~--~~~~~la~~~~-------------~~g~~~~A~~~~~~~------~~~-----~p~~~~~~~~l~~~~~ 250 (724)
++. .|... ..+...+.... ..+++..|...+... ++. .|...
T Consensus 156 al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~----------- 223 (530)
T 2ooe_A 156 GCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT----------- 223 (530)
T ss_dssp HTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-------------
T ss_pred HHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC-----------
Confidence 999 56543 23332222211 122334444333321 110 01000
Q ss_pred cCChHHHHHHHHHHHHh---CCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhH-HHHHHH
Q psy6603 251 LTNNDDIFQLLTHYISK---YPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKC-KIIQDL 326 (724)
Q Consensus 251 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~ 326 (724)
.........+...+.. .|.. .++. .....+
T Consensus 224 -~~~~~~~~~w~~~~~~e~~~~~~---------------------------------------------~~~~~~~~~~a 257 (530)
T 2ooe_A 224 -PQEAQQVDMWKKYIQWEKSNPLR---------------------------------------------TEDQTLITKRV 257 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSC---------------------------------------------CSCSHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHcCCcc---------------------------------------------CCcchhHHHHH
Confidence 0000111111111100 0000 0000 012344
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHh-cCCChHHH
Q psy6603 327 VESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDH-------LGDTM-------KALNYINAAID-HTPTLIEL 391 (724)
Q Consensus 327 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~~l~-~~p~~~~~ 391 (724)
+..|.+++... |..... ++..|..+.. .|+++ +|+..|+++++ ..|+++.+
T Consensus 258 ~~~y~~al~~~------------p~~~~~--w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 258 MFAYEQCLLVL------------GHHPDI--WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp HHHHHHHHHHH------------TTCHHH--HHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred HHHHHHHHHhC------------CCCHHH--HHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 55667776542 334444 4466777765 68877 99999999997 79999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCccch-hhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHH
Q psy6603 392 FVTKGRIYKHAGDVLEAYKWLDEAQSLDTADR-YINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQT 470 (724)
Q Consensus 392 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (724)
|..+|.++...|++++|...|+++++..|.++ .++..++.++.+.|++++|...|+++++..|.
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--------------- 388 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--------------- 388 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC---------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC---------------
Confidence 99999999999999999999999999999874 57777788777788888888888877763322
Q ss_pred HHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhH-hhhcCChHHHHHHHHHhh
Q psy6603 471 ECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLT-LNCLGRKEEAYEYVRRGL 549 (724)
Q Consensus 471 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al 549 (724)
....+...+.+ +...|++++|...|++++
T Consensus 389 --------------------------------------------------~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 389 --------------------------------------------------RHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp --------------------------------------------------CTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred --------------------------------------------------chHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 12233333333 335788888888888888
Q ss_pred hcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccH
Q psy6603 550 RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 550 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 590 (724)
+.+|+++.+|..++.++...|++++|..+|++++...|.++
T Consensus 419 ~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 419 KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 88888888888888888888888888888888888766544
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=5.8e-28 Score=250.43 Aligned_cols=379 Identities=11% Similarity=0.039 Sum_probs=256.0
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHhh----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hcchHHHHHH
Q psy6603 47 AYEYVRRGLRNDLKSHVCWHVYGLLQRS----DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ----MRDLEGYRET 118 (724)
Q Consensus 47 A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~ 118 (724)
++..++++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+. +++.+++.||.+|.. .+++++|+..
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 3445554443 4556666666666666 66667777777666653 456666666766666 6666677776
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH----cCCHHHH
Q psy6603 119 RYQLFMLRPTQRASWIGFAMAYHL----LHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD----SGDLEEA 190 (724)
Q Consensus 119 ~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~g~~~~A 190 (724)
|+++.+. +++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.+++.+|.+|.. .+++++|
T Consensus 102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---------RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 6666654 355666666666666 666777776666654432 34566666777666 6677777
Q ss_pred HHHHHHHhhhhccHhhHHHHHHHHHHH----cCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhc-----cCChHHHHHHH
Q psy6603 191 VKHLDRFKEQIHDKLTVEETYGALKLK----LGQYNEAMKHYESLIERNQENTLYYNKLVEAKQ-----LTNNDDIFQLL 261 (724)
Q Consensus 191 ~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~~~~~a~~~~ 261 (724)
+.+|+++.+. .++.++..+|.+|.. .+++++|+..|+++.+. .++.+...++.++. .+++++|+.+|
T Consensus 171 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 171 REWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 7777776654 356666777777766 67777777777776653 45566666666643 46677777777
Q ss_pred HHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCC
Q psy6603 262 THYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFS 341 (724)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 341 (724)
+++.+..+..
T Consensus 247 ~~a~~~~~~~---------------------------------------------------------------------- 256 (490)
T 2xm6_A 247 SQSAEQGNSI---------------------------------------------------------------------- 256 (490)
T ss_dssp HHHHTTTCHH----------------------------------------------------------------------
T ss_pred HHHHHCCCHH----------------------------------------------------------------------
Confidence 7766542110
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc-----CCHHHHHHHH
Q psy6603 342 LQDEGEVEPASALLWVYHYLAQHYDH----LGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHA-----GDVLEAYKWL 412 (724)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----g~~~~A~~~~ 412 (724)
+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.++... +++++|+.+|
T Consensus 257 ---------------a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 257 ---------------AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp ---------------HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred ---------------HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 23355666666 78888888888888765 5677888888888877 7888888888
Q ss_pred HHHHccCccchhhhhhHHHHHHHcC---CHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhh
Q psy6603 413 DEAQSLDTADRYINSKCAKYMLRAN---LIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKC 489 (724)
Q Consensus 413 ~~a~~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 489 (724)
+++.+.+ ++.....+|.++...| ++++|+.+|+++.+.
T Consensus 320 ~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~------------------------------------- 360 (490)
T 2xm6_A 320 TKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK------------------------------------- 360 (490)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------------------------------------
T ss_pred HHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------------------------------------
Confidence 8888764 3456677788887766 778888888887642
Q ss_pred hhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhh----cCChHHHHHHHHHhhhcCCCccchHHHHHHH
Q psy6603 490 HEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNC----LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLL 565 (724)
Q Consensus 490 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 565 (724)
.++.+++.+|.++.. .+++++|+.+|+++++.+ ++.+++.+|.+
T Consensus 361 ------------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~ 408 (490)
T 2xm6_A 361 ------------------------------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEI 408 (490)
T ss_dssp ------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred ------------------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 123467777777777 677777777777777653 56677777777
Q ss_pred Hhc----cccHHHHHHHHHHHhhhc---cccHHHHHHHHHHHHH
Q psy6603 566 QRS----DKKYDEAIKCYRNALKWE---HDNIQIMRDLSLLQIQ 602 (724)
Q Consensus 566 ~~~----~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~ 602 (724)
|.. .+++++|+.+|+++++.+ |+++.+..+++.++..
T Consensus 409 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 409 YYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 777 677777888888777777 4477777777776553
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=249.81 Aligned_cols=299 Identities=12% Similarity=0.065 Sum_probs=260.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-
Q psy6603 170 HSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA- 248 (724)
Q Consensus 170 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~- 248 (724)
+...+..+|..+...|++++|+..|++++..+|.+..++..++.++...|++++|+..++++++.+|+++.++..++.+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 4457888999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccC-ChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHH
Q psy6603 249 KQLT-NNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLV 327 (724)
Q Consensus 249 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 327 (724)
...| ++++|+..+++++...|....
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~~~~------------------------------------------------------ 126 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKTYGP------------------------------------------------------ 126 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTTCTH------------------------------------------------------
T ss_pred HHhhhhHHHHHHHHHHHHHhCCccHH------------------------------------------------------
Confidence 5678 888899888888877665421
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH
Q psy6603 328 ESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLE 407 (724)
Q Consensus 328 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~ 407 (724)
++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++
T Consensus 127 -----------------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 127 -----------------------------AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp -----------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred -----------------------------HHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 345788888889999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhh
Q psy6603 408 AYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLK 487 (724)
Q Consensus 408 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 487 (724)
|+..++++++.+|.+..++..+|.++...|++++|+..+++++...+....
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------------------------- 228 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN----------------------------- 228 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC-----------------------------
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc-----------------------------
Confidence 999999999999998888888899999999999998888888763322111
Q ss_pred hhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHh
Q psy6603 488 KCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567 (724)
Q Consensus 488 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 567 (724)
....|..+.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 229 ---------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 281 (330)
T 3hym_B 229 ---------------------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS 281 (330)
T ss_dssp ---------------------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred ---------------------------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHH
Confidence 00224556799999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhhhccccHHHHHHHHHHH-HHhhhHh
Q psy6603 568 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ-IQMRDLE 607 (724)
Q Consensus 568 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~~ 607 (724)
..|++++|+.+|+++++++|+++.++..++.++ ...|+.+
T Consensus 282 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 282 LMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999877 4556544
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=9.5e-28 Score=248.81 Aligned_cols=401 Identities=12% Similarity=0.043 Sum_probs=297.8
Q ss_pred HHHHHHHhhCCCCCCChHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhh----cCCHHHHH
Q psy6603 11 GLKFAKQILTNPKYAEHGETLAMKGLTLNC----LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS----DKKYDEAI 82 (724)
Q Consensus 11 A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~ 82 (724)
++..+++... +.++++++.+|.++.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+
T Consensus 26 ~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 3444444433 3567888888888887 78888888888888875 567788888888888 88888888
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHH----hcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHH
Q psy6603 83 KCYRNALKWEHDNIQIMRDLSLLQIQ----MRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL----LHDFDMACNILE 154 (724)
Q Consensus 83 ~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~ 154 (724)
.+|+++.+. .++.+++.+|.+|.. .+++++|+..|+++.+. +++.++..+|.+|.. .+++++|+.+|+
T Consensus 100 ~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 100 IWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 888888764 577888888888887 78888888888888765 567888888888887 788888888888
Q ss_pred HHHHhhccCCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHH----cCChHHHHH
Q psy6603 155 AFRKTQQVTNSYDFEHSELLLYQSMVIQD----SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLK----LGQYNEAMK 226 (724)
Q Consensus 155 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 226 (724)
++.+.. ++.+++.+|.+|.. .+++++|+.+|+++.+. .++.++..+|.++.. .+++++|+.
T Consensus 176 ~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 176 KAAEQG---------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHCC---------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 876542 45788888888888 78888888888888764 456778888888886 788888888
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHhc-----cCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhc
Q psy6603 227 HYESLIERNQENTLYYNKLVEAKQ-----LTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHK 301 (724)
Q Consensus 227 ~~~~~~~~~p~~~~~~~~l~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (724)
.|+++++. .++.+...++.++. .+++++|+..|+++.+..
T Consensus 245 ~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--------------------------------- 289 (490)
T 2xm6_A 245 LFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--------------------------------- 289 (490)
T ss_dssp HHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---------------------------------
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---------------------------------
Confidence 88888764 55677777777743 356666666665554321
Q ss_pred CCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhc-----CCHHHHHH
Q psy6603 302 GVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHL-----GDTMKALN 376 (724)
Q Consensus 302 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----~~~~~A~~ 376 (724)
+ ..+.+.+|.+|... +++++|+.
T Consensus 290 ------------------------------------------------~----~~a~~~Lg~~y~~~~~g~~~~~~~A~~ 317 (490)
T 2xm6_A 290 ------------------------------------------------N----SDGQYYLAHLYDKGAEGVAKNREQAIS 317 (490)
T ss_dssp ------------------------------------------------C----HHHHHHHHHHHHHCBTTBCCCHHHHHH
T ss_pred ------------------------------------------------C----HHHHHHHHHHHHcCCCCCcCCHHHHHH
Confidence 0 01445788888876 78888888
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCccchhhhhhHHHHHHH----cCCHHHHHHHHHHh
Q psy6603 377 YINAAIDHTPTLIELFVTKGRIYKHAG---DVLEAYKWLDEAQSLDTADRYINSKCAKYMLR----ANLIKEAEETCSKF 449 (724)
Q Consensus 377 ~~~~~l~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~ 449 (724)
+|+++++. .++.+++.+|.++...| ++++|+.+|+++.+. .++..+..+|.++.. .+++++|+..|+++
T Consensus 318 ~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 318 WYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 88888875 45678888888888766 788888888888876 456667777777776 66777777666665
Q ss_pred hhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhh
Q psy6603 450 TREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKG 529 (724)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 529 (724)
.+ ..++.+++.+|
T Consensus 394 ~~-------------------------------------------------------------------~~~~~a~~~Lg 406 (490)
T 2xm6_A 394 AE-------------------------------------------------------------------QGLSAAQVQLG 406 (490)
T ss_dssp HH-------------------------------------------------------------------TTCHHHHHHHH
T ss_pred Hh-------------------------------------------------------------------CCCHHHHHHHH
Confidence 43 12456888888
Q ss_pred hHhhh----cCChHHHHHHHHHhhhcCCC---ccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHH
Q psy6603 530 LTLNC----LGRKEEAYEYVRRGLRNDLK---SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQI 592 (724)
Q Consensus 530 ~~~~~----~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 592 (724)
.+|.. .+++++|+.+|+++++.+|+ ++.+...+|.++.. +.+.|.+..++.++..|++..+
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~ 474 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWA 474 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 88887 78888888888888888844 77788888876653 4455555555555555655443
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=8.1e-28 Score=252.02 Aligned_cols=418 Identities=11% Similarity=0.029 Sum_probs=323.6
Q ss_pred HHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q psy6603 15 AKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 94 (724)
Q Consensus 15 ~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~ 94 (724)
+++.++ .+|.+..+|..++.. ...|++++|...|+++++..|.+...|..+|..+...|++++|...|++++...|
T Consensus 2 le~al~--~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p- 77 (530)
T 2ooe_A 2 AEKKLE--ENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL- 77 (530)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-
T ss_pred hhhHhh--hCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Confidence 566677 678999999999984 7899999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHH-HHHhcchHHHHH----HHHHHHHh---CCCchhHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q psy6603 95 NIQIMRDLSLL-QIQMRDLEGYRE----TRYQLFML---RPTQRASWIGFAMAYHL---------LHDFDMACNILEAFR 157 (724)
Q Consensus 95 ~~~~~~~la~~-~~~~~~~~~A~~----~~~~~l~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~~ 157 (724)
+...|..++.. ....|+++.|.+ .|++++.. +|.+...|...+..... .|+++.|..+|++++
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 67788888854 446688887765 77777764 56677889888887765 789999999999877
Q ss_pred HhhccCCCCChhhHHHHHHHHHHH-------------HHcCCHHHHHHHHHH------Hhhh-----hccH-------hh
Q psy6603 158 KTQQVTNSYDFEHSELLLYQSMVI-------------QDSGDLEEAVKHLDR------FKEQ-----IHDK-------LT 206 (724)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~~~~~-------------~~~g~~~~A~~~~~~------~~~~-----~p~~-------~~ 206 (724)
+ . |.. .....|...+... ...+++..|...+.. .++. .|.. ..
T Consensus 158 ~-~---P~~--~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 158 V-N---PMI--NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp T-S---CCT--THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred h-c---hhh--hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 6 3 331 1122332222211 134567888877765 3432 2321 23
Q ss_pred HHHHHHHHHHHc----CCh----HHHHHHHHHHHHHcCCcHHHHHHHHHHhc--------cCChH-------HHHHHHHH
Q psy6603 207 VEETYGALKLKL----GQY----NEAMKHYESLIERNQENTLYYNKLVEAKQ--------LTNND-------DIFQLLTH 263 (724)
Q Consensus 207 ~~~~la~~~~~~----g~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--------~~~~~-------~a~~~~~~ 263 (724)
.|.......... ++. ..++..|++++..+|.++.+|..++.++. .|+++ +|+.+|++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 444433332221 232 47889999999999999999999999854 58876 67777776
Q ss_pred HHH-hCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCC
Q psy6603 264 YIS-KYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSL 342 (724)
Q Consensus 264 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 342 (724)
++. ..|++
T Consensus 312 Al~~~~p~~----------------------------------------------------------------------- 320 (530)
T 2ooe_A 312 AISTLLKKN----------------------------------------------------------------------- 320 (530)
T ss_dssp HTTTTCSSC-----------------------------------------------------------------------
T ss_pred HHHHhCccc-----------------------------------------------------------------------
Confidence 665 44443
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q psy6603 343 QDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLI-ELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA 421 (724)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 421 (724)
.. ++..++.++...|++++|...|+++++..|.++ .+|..++.++.+.|++++|...|+++++..|.
T Consensus 321 ----------~~--l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 321 ----------ML--LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp ----------HH--HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred ----------HH--HHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 22 445778888899999999999999999999875 69999999999999999999999999999887
Q ss_pred chhhhhhHHHH-HHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhh
Q psy6603 422 DRYINSKCAKY-MLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHK 500 (724)
Q Consensus 422 ~~~~~~~~~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 500 (724)
+...+...+.+ +...|++++|..+|+++++.
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~------------------------------------------------ 420 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK------------------------------------------------ 420 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH------------------------------------------------
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH------------------------------------------------
Confidence 66555444433 23467777777777776642
Q ss_pred chHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccc----hHHHHHHHHhccccHHHHH
Q psy6603 501 QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV----CWHVYGLLQRSDKKYDEAI 576 (724)
Q Consensus 501 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~A~ 576 (724)
+|.++.+|..++.++...|+.++|..+|++++...|.++. +|...+......|+.+.+.
T Consensus 421 -----------------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 421 -----------------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp -----------------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred -----------------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 2455678999999999999999999999999998777665 8888888888999999999
Q ss_pred HHHHHHhhhccccH
Q psy6603 577 KCYRNALKWEHDNI 590 (724)
Q Consensus 577 ~~~~~al~~~p~~~ 590 (724)
.++.++++..|+++
T Consensus 484 ~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 484 KVEKRRFTAFREEY 497 (530)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHCchhc
Confidence 99999999998644
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=2.3e-29 Score=251.88 Aligned_cols=298 Identities=12% Similarity=0.075 Sum_probs=229.8
Q ss_pred HHhccCCHHHHHH-HHHHHHHcCCCch----hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc
Q psy6603 37 TLNCLGRKEEAYE-YVRRGLRNDLKSH----VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 111 (724)
Q Consensus 37 ~~~~~g~~~~A~~-~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~ 111 (724)
++...|++++|+. .|++++...|+++ ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5666789999998 9998888888764 4588899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChh---------hHHHHHHHHHHHH
Q psy6603 112 LEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFE---------HSELLLYQSMVIQ 182 (724)
Q Consensus 112 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~---------~~~~~~~~~~~~~ 182 (724)
+++|+..|+++++.+|+++.++..+|.++...|++++|+..++++....+..+..... ....+..++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999988877765333220000 000111344444
Q ss_pred HcCCHHHHHHHHHHHhhhhcc--HhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHH
Q psy6603 183 DSGDLEEAVKHLDRFKEQIHD--KLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQL 260 (724)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~ 260 (724)
..|++++|+..|++++...|. ++.++..+|.++...|++++|+..|++++..+|+++.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------- 252 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL-------------------- 252 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------------
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH--------------------
Confidence 777777787777777777777 6777777777777777777777777777777665443
Q ss_pred HHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCC
Q psy6603 261 LTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHF 340 (724)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 340 (724)
T Consensus 253 -------------------------------------------------------------------------------- 252 (368)
T 1fch_A 253 -------------------------------------------------------------------------------- 252 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc
Q psy6603 341 SLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDT 420 (724)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 420 (724)
++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++.+.|
T Consensus 253 ----------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 253 ----------------LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp ----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3346677777788999999999999999998888999999999999999999999999998888
Q ss_pred cc-----------hhhhhhHHHHHHHcCCHHHHHHHHHHhhh
Q psy6603 421 AD-----------RYINSKCAKYMLRANLIKEAEETCSKFTR 451 (724)
Q Consensus 421 ~~-----------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 451 (724)
++ ..++..++.++...|++++|..++.+.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 77 67888889999999999999988887664
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=3.7e-29 Score=250.45 Aligned_cols=293 Identities=14% Similarity=0.031 Sum_probs=248.7
Q ss_pred cccchhhHHH-HHHHhhC-CCCCCC-hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHH
Q psy6603 4 EHKQYKNGLK-FAKQILT-NPKYAE-HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 80 (724)
Q Consensus 4 ~~~~~~~A~~-~~~~~l~-~p~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 80 (724)
..|+|++|+. .+++++. .|.+|. +...++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 4589999999 9999888 444443 356789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHH----------------HHHHHHHHcC
Q psy6603 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWI----------------GFAMAYHLLH 144 (724)
Q Consensus 81 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~----------------~la~~~~~~g 144 (724)
|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|.+...+. .++.++ ..|
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS 195 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc
Confidence 999999999999999999999999999999999999999999999999887765 456666 999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHH
Q psy6603 145 DFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEA 224 (724)
Q Consensus 145 ~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 224 (724)
++++|+..++++.+..+..+ ...++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSI-----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999887763322 4678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCc
Q psy6603 225 MKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVP 304 (724)
Q Consensus 225 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (724)
+..|++++..+|+++.++.
T Consensus 271 ~~~~~~al~~~~~~~~~~~------------------------------------------------------------- 289 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRY------------------------------------------------------------- 289 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHH-------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCcHHHHH-------------------------------------------------------------
Confidence 9999999999886655433
Q ss_pred hhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy6603 305 PLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDH 384 (724)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 384 (724)
.+|.++...|++++|+..|++++..
T Consensus 290 -------------------------------------------------------~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 290 -------------------------------------------------------NLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp -------------------------------------------------------HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5556666677777777777777777
Q ss_pred CCCh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy6603 385 TPTL-----------IELFVTKGRIYKHAGDVLEAYKWLDEAQSL 418 (724)
Q Consensus 385 ~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 418 (724)
.|++ +.+|..+|.++...|++++|..+++++++.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 7766 788889999999999999888888766543
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=1.6e-28 Score=245.12 Aligned_cols=276 Identities=15% Similarity=0.097 Sum_probs=181.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 108 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 108 (724)
..++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 33555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHH
Q psy6603 109 MRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLE 188 (724)
Q Consensus 109 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~ 188 (724)
.|++++|+..++++++..|++...+..++ .....+..+|.++...|+++
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKK-------------------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC--------------------------------------------------CCHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhc-------------------------------cchHHHHHHHHHHhhhhhHH
Confidence 55555555555555555554443333321 01234455688888899999
Q ss_pred HHHHHHHHHhhhhcc--HhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHH
Q psy6603 189 EAVKHLDRFKEQIHD--KLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYIS 266 (724)
Q Consensus 189 ~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~ 266 (724)
+|+..|++++...|+ ++.++..+|.++...|++++|+..|+++++..|+++.+
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~------------------------- 249 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL------------------------- 249 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------------------------
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------------------------
Confidence 999999999999988 78889999999999999999999999998888765543
Q ss_pred hCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy6603 267 KYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEG 346 (724)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 346 (724)
T Consensus 250 -------------------------------------------------------------------------------- 249 (365)
T 4eqf_A 250 -------------------------------------------------------------------------------- 249 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc-----
Q psy6603 347 EVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA----- 421 (724)
Q Consensus 347 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----- 421 (724)
+..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+.+|++++++.|+
T Consensus 250 -----------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 318 (365)
T 4eqf_A 250 -----------WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQ 318 (365)
T ss_dssp -----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC----
T ss_pred -----------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCc
Confidence 3356666777888888888888888888888888888888888888888888888888888766
Q ss_pred -------chhhhhhHHHHHHHcCCHHHHHHHHHHhhh
Q psy6603 422 -------DRYINSKCAKYMLRANLIKEAEETCSKFTR 451 (724)
Q Consensus 422 -------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 451 (724)
+..++..++.++...|+.+.+.....+.+.
T Consensus 319 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 319 QVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp --------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 256677888888888988888877766543
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=2.4e-27 Score=233.08 Aligned_cols=286 Identities=13% Similarity=0.064 Sum_probs=217.6
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 105 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 105 (724)
.+...++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 35578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHH-HH-HHHH
Q psy6603 106 QIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQ-SM-VIQD 183 (724)
Q Consensus 106 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~-~~~~ 183 (724)
+...|++++|+..++++++..|.+...+..+.... |. ......+ +. ++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~-----~~~~~~~~~~~~~~~ 150 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD-----------------------VD-----IDDLNVQSEDFFFAA 150 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------------CCTTS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH-----------------------HH-----HHHHHHHHHhHHHHH
Confidence 99999999999999999999999887776652111 00 0011122 22 3555
Q ss_pred cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHH
Q psy6603 184 SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLT 262 (724)
Q Consensus 184 ~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~ 262 (724)
.|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++..+|+++.++..++.+ ...|++++|+..++
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666666666666666666666666666667777766666666666666666666666 44566666666666
Q ss_pred HHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCC
Q psy6603 263 HYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSL 342 (724)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 342 (724)
+++...|...
T Consensus 231 ~a~~~~~~~~---------------------------------------------------------------------- 240 (327)
T 3cv0_A 231 RALDINPGYV---------------------------------------------------------------------- 240 (327)
T ss_dssp HHHHHCTTCH----------------------------------------------------------------------
T ss_pred HHHHcCCCCH----------------------------------------------------------------------
Confidence 6665554431
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHcCCHHHHHH
Q psy6603 343 QDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPT------------LIELFVTKGRIYKHAGDVLEAYK 410 (724)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~ 410 (724)
.++..+|.++...|++++|+..+++++...|. ++.++..+|.++...|++++|..
T Consensus 241 -------------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 241 -------------RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp -------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 03447788888889999999999999998888 78899999999999999999999
Q ss_pred HHHHHHccCccc
Q psy6603 411 WLDEAQSLDTAD 422 (724)
Q Consensus 411 ~~~~a~~~~~~~ 422 (724)
.++++++..|++
T Consensus 308 ~~~~~l~~~~~~ 319 (327)
T 3cv0_A 308 TYAQNVEPFAKE 319 (327)
T ss_dssp HTTCCSHHHHHH
T ss_pred HHHHHHHhcchh
Confidence 888877765543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=4.6e-27 Score=234.59 Aligned_cols=278 Identities=12% Similarity=0.032 Sum_probs=232.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHc
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRA 436 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 436 (724)
.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++...
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcccCccCChhHH-HHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcC
Q psy6603 437 NLIKEAEETCSKFTREGVSAMENLNEM-QCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTN 515 (724)
Q Consensus 437 g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 515 (724)
|++++|+..++++++..|......... ........+|.++...|++++|+..+.++ +...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------l~~~ 207 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA-------------------AHQN 207 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH-------------------HHHS
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH-------------------HHhC
Confidence 999999999999998766543322111 00112233577777777777777765543 4444
Q ss_pred CCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHH
Q psy6603 516 PKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 595 (724)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 595 (724)
|.. .++.++..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..
T Consensus 208 p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 286 (365)
T 4eqf_A 208 GDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286 (365)
T ss_dssp CSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 331 1677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHhhHHHHHHHHHhhhhh-------------hhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHh
Q psy6603 596 LSLLQIQMRDLEGYREGVSAMENLNEM-------------QCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFS 656 (724)
Q Consensus 596 l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 656 (724)
+|.++...|++++|...++.+....|. ...| ..++.++..+|+.+.|.+...+.++.+.
T Consensus 287 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 287 LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIW--AALRIALSLMDQPELFQAANLGDLDVLL 358 (365)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHH--HHHHHHHHHHTCHHHHHHHHTTCCGGGT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHH--HHHHHHHHHcCcHHHHHHHHHhhHHHHH
Confidence 999999999999999999999888765 2455 6789999999999999887766554433
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=6.9e-27 Score=229.21 Aligned_cols=255 Identities=14% Similarity=0.129 Sum_probs=176.4
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCC-HHHHHHHHHHHHhhCCCcHHHHHH
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKK-YDEAIKCYRNALKWEHDNIQIMRD 101 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~~~ 101 (724)
.+|.++.++..+|.++...|++++|+..|++++.++|++..+|+.+|.++...|+ +++|+.+|++++.++|++..+|+.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3566778888888888888888888888888888888888888888888888886 888888888888888888888888
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHH
Q psy6603 102 LSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVI 181 (724)
Q Consensus 102 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 181 (724)
+|.++...|++++|+..|+++++++|++..+|..+|.++...|++++|+..++
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~--------------------------- 224 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD--------------------------- 224 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH---------------------------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHH---------------------------
Confidence 88888888888888888888888888887777777766666665555555544
Q ss_pred HHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHH-cCChHHH-----HHHHHHHHHHcCCcHHHHHHHHHHhc-cC--
Q psy6603 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLK-LGQYNEA-----MKHYESLIERNQENTLYYNKLVEAKQ-LT-- 252 (724)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~~~~~~p~~~~~~~~l~~~~~-~~-- 252 (724)
++++.+|++..+|..+|.++.. .|..++| +..|++++.++|++..+|..++.++. .|
T Consensus 225 --------------~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~ 290 (382)
T 2h6f_A 225 --------------QLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLS 290 (382)
T ss_dssp --------------HHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGG
T ss_pred --------------HHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCcc
Confidence 4444555555555555555555 3333444 35555555555555555555555532 23
Q ss_pred ChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHH
Q psy6603 253 NNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVE 332 (724)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (724)
++++|+..+.++ +..|++
T Consensus 291 ~~~~a~~~~~~~-~~~p~~------------------------------------------------------------- 308 (382)
T 2h6f_A 291 KYPNLLNQLLDL-QPSHSS------------------------------------------------------------- 308 (382)
T ss_dssp GCHHHHHHHHHH-TTTCCC-------------------------------------------------------------
T ss_pred chHHHHHHHHHh-ccCCCC-------------------------------------------------------------
Confidence 344444444333 222221
Q ss_pred HHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHc
Q psy6603 333 ALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLG---------DTMKALNYINAA-IDHTPTLIELFVTKGRIYKHA 402 (724)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---------~~~~A~~~~~~~-l~~~p~~~~~~~~l~~~~~~~ 402 (724)
.+++..+|.+|...| .+++|+.+|+++ ++.+|.....|..++..+..+
T Consensus 309 ----------------------~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 309 ----------------------PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 113335566665543 258999999999 999999999999999887654
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=1.1e-26 Score=227.71 Aligned_cols=255 Identities=11% Similarity=0.073 Sum_probs=183.9
Q ss_pred hhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhccCCCCCh
Q psy6603 90 KWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHD-FDMACNILEAFRKTQQVTNSYDF 168 (724)
Q Consensus 90 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~ 168 (724)
..+|++..++..+|.++...|++++|+..++++++++|++..+|..+|.++...|+ +++|+..++++++.. |.
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---P~--- 164 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PK--- 164 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TT---
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---CC---
Confidence 33444444444444444444444444444444444444444444444444444443 444444444433332 22
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy6603 169 EHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA 248 (724)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 248 (724)
+..+|..+|.++...|++++|+..|+++++++|++..+|..+|.++..+|++++|+..|+++++.+|++..+|..++.+
T Consensus 165 -~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 165 -NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 243 (382)
T ss_dssp -CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3445555566666677788888888999999999999999999999999999999999999999999999999999999
Q ss_pred hc--cCChHHH-----HHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHH
Q psy6603 249 KQ--LTNNDDI-----FQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCK 321 (724)
Q Consensus 249 ~~--~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (724)
+. .|..++| +..|++++...|+..
T Consensus 244 l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~------------------------------------------------- 274 (382)
T 2h6f_A 244 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNE------------------------------------------------- 274 (382)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCH-------------------------------------------------
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHCCCCH-------------------------------------------------
Confidence 54 3444777 466777777666652
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q psy6603 322 IIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLG--DTMKALNYINAAIDHTPTLIELFVTKGRIY 399 (724)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 399 (724)
. +++.++.++...| ++++|+..+.++ +.+|+++.++..+|.++
T Consensus 275 --------------------------------~--a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 275 --------------------------------S--AWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIY 319 (382)
T ss_dssp --------------------------------H--HHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHH
T ss_pred --------------------------------H--HHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHH
Confidence 1 4557788888877 689999999998 99999999999999999
Q ss_pred HHcC---------CHHHHHHHHHHH-HccCccchhhhhhHHHHHHH
Q psy6603 400 KHAG---------DVLEAYKWLDEA-QSLDTADRYINSKCAKYMLR 435 (724)
Q Consensus 400 ~~~g---------~~~~A~~~~~~a-~~~~~~~~~~~~~~~~~~~~ 435 (724)
..+| .+++|+.+|+++ ++++|.....+..++..+..
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 9985 359999999999 99999988888777766653
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=2.2e-26 Score=209.32 Aligned_cols=200 Identities=17% Similarity=0.104 Sum_probs=173.0
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 104 (724)
|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----------cchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHH
Q psy6603 105 LQIQM-----------RDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSEL 173 (724)
Q Consensus 105 ~~~~~-----------~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~ 173 (724)
++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.. . .+.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~-------~~~~ 153 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D-------TPEI 153 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-------CHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c-------chHH
Confidence 99999 999999999999999999999999999999999999999999999888765 2 4568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6603 174 LLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLI 232 (724)
Q Consensus 174 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 232 (724)
+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999888764
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=1.2e-26 Score=227.95 Aligned_cols=261 Identities=12% Similarity=0.068 Sum_probs=238.6
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
++..|++++|+..++++++ .+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|
T Consensus 31 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQ--AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 3567999999999999999 67789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHH--------------HH-HHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy6603 82 IKCYRNALKWEHDNIQIMRDL--------------SL-LQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDF 146 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 146 (724)
+..|++++..+|.+...+..+ +. ++...|++++|+..++++++..|.++.++..+|.++...|++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 188 (327)
T 3cv0_A 109 LASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNY 188 (327)
T ss_dssp HHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccH
Confidence 999999999999988877776 66 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHH
Q psy6603 147 DMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMK 226 (724)
Q Consensus 147 ~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 226 (724)
++|+..++++.+.. |. ...++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.
T Consensus 189 ~~A~~~~~~~~~~~---~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 189 DSAAANLRRAVELR---PD----DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhC---CC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999987765 43 567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC------------cHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCC
Q psy6603 227 HYESLIERNQE------------NTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKA 271 (724)
Q Consensus 227 ~~~~~~~~~p~------------~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~ 271 (724)
.|++++...|+ +..++..++.+ ...|++++|...+++++...|+.
T Consensus 262 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 99999999999 78899999998 56899999999998877766554
No 30
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.94 E-value=6.3e-25 Score=223.30 Aligned_cols=378 Identities=13% Similarity=0.015 Sum_probs=241.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCH---HHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKY---DEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 108 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~---~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 108 (724)
..+|..+++.|++++|+..|+++.+. .++.+++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 55788999999999999999999764 5788889999999999988 9999999999975 77889999996665
Q ss_pred hc-----chHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH
Q psy6603 109 MR-----DLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD 183 (724)
Q Consensus 109 ~~-----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 183 (724)
.+ ++++|+..|+++++. +++.+++.+|.+|...+...++...++.+.+..+. ..+.+++.+|.++..
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------g~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------GYPEAGLAQVLLYRT 153 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------TCTTHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHc
Confidence 55 889999999999984 45568999999999887765555444444443321 135688889999999
Q ss_pred cCCHHHHHH----HHHHHhhhhccHhhHHHHHHHHHHHcC---ChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHH
Q psy6603 184 SGDLEEAVK----HLDRFKEQIHDKLTVEETYGALKLKLG---QYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDD 256 (724)
Q Consensus 184 ~g~~~~A~~----~~~~~~~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 256 (724)
.+.++++.. +++.+...+ +.+++.+|.++...| ++++|+..|+++.+..|.....+..++.++..|.
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~--- 227 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT--- 227 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG---
T ss_pred CCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---
Confidence 885554444 444444443 448899999999999 8999999999998888777665555555532110
Q ss_pred HHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhh
Q psy6603 257 IFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSK 336 (724)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 336 (724)
T Consensus 228 -------------------------------------------------------------------------------- 227 (452)
T 3e4b_A 228 -------------------------------------------------------------------------------- 227 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH-H--HHcCCHHHHHHHHH
Q psy6603 337 TGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRI-Y--KHAGDVLEAYKWLD 413 (724)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~-~--~~~g~~~~A~~~~~ 413 (724)
...+++++|+.+|+++. |+++.+++.+|.+ + ...+++++|+.+|+
T Consensus 228 -----------------------------~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 228 -----------------------------LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp -----------------------------GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred -----------------------------CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 00256777777777766 6777777777776 3 35667777777777
Q ss_pred HHHccCccchhhhhhHHHHHHHcC-----CHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhh
Q psy6603 414 EAQSLDTADRYINSKCAKYMLRAN-----LIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKK 488 (724)
Q Consensus 414 ~a~~~~~~~~~~~~~~~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 488 (724)
++.+.+ ++.....+|.++. .| ++++|+.+|+++.
T Consensus 276 ~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-------------------------------------- 314 (452)
T 3e4b_A 276 NGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-------------------------------------- 314 (452)
T ss_dssp HHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------------------------------------
T ss_pred HHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------------------------------------
Confidence 776543 4555555555555 33 5555555554443
Q ss_pred hhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhh----cCChHHHHHHHHHhhhcCCCccchHHHHHH
Q psy6603 489 CHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNC----LGRKEEAYEYVRRGLRNDLKSHVCWHVYGL 564 (724)
Q Consensus 489 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 564 (724)
+.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+.+|.
T Consensus 315 ------------------------------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~ 362 (452)
T 3e4b_A 315 ------------------------------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQ 362 (452)
T ss_dssp ------------------------------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred ------------------------------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHH
Confidence 2334466777766665 3478888888888876 456778888888
Q ss_pred HHhc----cccHHHHHHHHHHHhhhccccHHHHHHHHHHHH--HhhhHhhHHHHHHH
Q psy6603 565 LQRS----DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI--QMRDLEGYREGVSA 615 (724)
Q Consensus 565 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~~~~~a~~~~~~ 615 (724)
+|.. ..++.+|..+|+++.+..+. .+...++.+.. ..++...+....+.
T Consensus 363 ~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 363 LFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8875 45888899999988886644 34444444322 22334444444443
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=9.5e-25 Score=207.55 Aligned_cols=275 Identities=13% Similarity=0.091 Sum_probs=171.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCch-hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHH
Q psy6603 37 TLNCLGRKEEAYEYVRRGLRNDLKSH-VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGY 115 (724)
Q Consensus 37 ~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A 115 (724)
..+..|+|.+|+..++++...+|++. .....++.+|...|++++|+..++. .+|.+..++..++..+...++.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 34556666666666666555555552 3555566666666666666665544 2444455556666666666666666
Q ss_pred HHHHHHHHHh--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q psy6603 116 RETRYQLFML--RPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKH 193 (724)
Q Consensus 116 ~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 193 (724)
++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |. +..++..+|.++...|++++|+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~----~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GD----SLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CC----SHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CC----CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666554 366666666666666666666666655443 22 344555555555555555555555
Q ss_pred HHHHhhhhccHhhHHHHHH--HHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q psy6603 194 LDRFKEQIHDKLTVEETYG--ALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKA 271 (724)
Q Consensus 194 ~~~~~~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (724)
|+++++.+|++.......+ .++...|++++|+..|+++++..|+++.
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~------------------------------- 201 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL------------------------------- 201 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHH-------------------------------
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHH-------------------------------
Confidence 5555555555433222222 2222335555555555555555554333
Q ss_pred CccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCch
Q psy6603 272 TVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPA 351 (724)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 351 (724)
T Consensus 202 -------------------------------------------------------------------------------- 201 (291)
T 3mkr_A 202 -------------------------------------------------------------------------------- 201 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccCccchhhhhhHH
Q psy6603 352 SALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLE-AYKWLDEAQSLDTADRYINSKCA 430 (724)
Q Consensus 352 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~a~~~~~~~~~~~~~~~ 430 (724)
+++.+|.++...|++++|+..++++++.+|++++++.++|.++...|+.++ +..+++++++++|+++.+.
T Consensus 202 -----~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~---- 272 (291)
T 3mkr_A 202 -----LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK---- 272 (291)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----
Confidence 344677778888999999999999999999999999999999999998876 5688899999999988654
Q ss_pred HHHHHcCCHHHHHHHH
Q psy6603 431 KYMLRANLIKEAEETC 446 (724)
Q Consensus 431 ~~~~~~g~~~~A~~~~ 446 (724)
....+.+.++++...|
T Consensus 273 d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 273 EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3344445555555444
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=1.3e-24 Score=206.93 Aligned_cols=261 Identities=13% Similarity=-0.017 Sum_probs=193.3
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc----HHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN----IQIMRDL 102 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l 102 (724)
+++.++..|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++. .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3467888999999999999999999999999999999999999999999999999999999998 4443 3458888
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHH
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQ 182 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 182 (724)
|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++. .|. ...++..+|....
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~----~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTT----DPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCC----CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCC----cHHHHHHHHHHHH
Confidence 888888888988988888888888888888888888888777777777666654333 343 5566667774444
Q ss_pred HcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCC---hHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHH
Q psy6603 183 DSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQ---YNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQ 259 (724)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~ 259 (724)
..+++++|+..|+++++..|+++.++..+|.++...|+ +++|+..|+++++.....+.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------- 214 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA------------------- 214 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG-------------------
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc-------------------
Confidence 44577777777777777777777777777777777766 66677666666655321100
Q ss_pred HHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCC
Q psy6603 260 LLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGH 339 (724)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 339 (724)
T Consensus 215 -------------------------------------------------------------------------------- 214 (272)
T 3u4t_A 215 -------------------------------------------------------------------------------- 214 (272)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC
Q psy6603 340 FSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAG 403 (724)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g 403 (724)
.. ......++..+|.+|...|++++|+.+++++++.+|+++.++-.++.+....+
T Consensus 215 --------~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 215 --------KY-KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp --------GG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred --------cc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 00 11112256688999999999999999999999999999999988887765443
No 33
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=5.2e-25 Score=223.61 Aligned_cols=306 Identities=11% Similarity=0.072 Sum_probs=253.7
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch----hHHHHHHHHHhhcCCHHHHHHHHHHHHhh------CCC
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH----VCWHVYGLLQRSDKKYDEAIKCYRNALKW------EHD 94 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~~------~p~ 94 (724)
+....+++.+|.++...|++++|+..|++++...|+++ .++..+|.++...|++++|+..|++++.. .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34567889999999999999999999999999999884 56889999999999999999999999877 344
Q ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCC--------------------HHH
Q psy6603 95 NIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQ------RASWIGFAMAYHLLHD--------------------FDM 148 (724)
Q Consensus 95 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~ 148 (724)
...++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 56789999999999999999999999999987654 4589999999999999 999
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhh------HHHHHHHHHHHcCChH
Q psy6603 149 ACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLT------VEETYGALKLKLGQYN 222 (724)
Q Consensus 149 A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~la~~~~~~g~~~ 222 (724)
|+..++++.......++ .+....++..+|.++...|++++|+..+++++...|.... ++..+|.++...|+++
T Consensus 166 A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 99999988877644432 3446678889999999999999999999999988765443 8888999999999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcC
Q psy6603 223 EAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKG 302 (724)
Q Consensus 223 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (724)
+|+..+++++...|...
T Consensus 245 ~A~~~~~~al~~~~~~~--------------------------------------------------------------- 261 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLK--------------------------------------------------------------- 261 (406)
T ss_dssp HHHHHHHHHHHHHHHTT---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCc---------------------------------------------------------------
Confidence 99999988887654210
Q ss_pred CchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy6603 303 VPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAI 382 (724)
Q Consensus 303 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 382 (724)
.......++..+|.++...|++++|+.++++++
T Consensus 262 -----------------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 262 -----------------------------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp -----------------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------------------------------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 011112256688999999999999999999999
Q ss_pred hcCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc------chhhhhhHHHHHHHcCCHHH
Q psy6603 383 DHTPT------LIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA------DRYINSKCAKYMLRANLIKE 441 (724)
Q Consensus 383 ~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~~~~~g~~~~ 441 (724)
+..+. ...++..+|.++...|++++|+.++++++++.+. ...++..++.++...|+...
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 87543 2678899999999999999999999999988332 35567778888888887644
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.93 E-value=7.1e-22 Score=211.44 Aligned_cols=254 Identities=15% Similarity=0.135 Sum_probs=123.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCC
Q psy6603 359 HYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANL 438 (724)
Q Consensus 359 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~ 438 (724)
..++.++.+.|++++|++.++++ .++.+|...+.++...|++..|..+... +..+|+ ....++..|.+.|.
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~d---eLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---ELEELINYYQDRGY 1295 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHH---HHHHHHHHHHHcCC
Confidence 35555555566666666666655 3345555555555556666665555543 222332 22245555566666
Q ss_pred HHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHH--hhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCC
Q psy6603 439 IKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQ--RLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNP 516 (724)
Q Consensus 439 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 516 (724)
+++|+.+++.++..++.... +| .++|.++. +-++..++++.|... .+..+.+.
T Consensus 1296 feEAI~LlE~aL~LeraH~g-------mf--tELaiLyaKy~peklmEhlk~f~~r-------ini~k~~r--------- 1350 (1630)
T 1xi4_A 1296 FEELITMLEAALGLERAHMG-------MF--TELAILYSKFKPQKMREHLELFWSR-------VNIPKVLR--------- 1350 (1630)
T ss_pred HHHHHHHHHHHhccChhHhH-------HH--HHHHHHHHhCCHHHHHHHHHHHHHh-------cccchHhH---------
Confidence 66666666655543322111 11 11222222 222222222222211 00000000
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc------------CCCccchHHHHHHHHhccc--------------
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN------------DLKSHVCWHVYGLLQRSDK-------------- 570 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~~-------------- 570 (724)
-...+..|..+..+|.+-|+++.|+...-..... .+.++..++.....|...+
T Consensus 1351 -~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~r 1429 (1630)
T 1xi4_A 1351 -AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPR 1429 (1630)
T ss_pred -HHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhc
Confidence 0123345556666666666666666332222211 3445555555555555444
Q ss_pred -cHHHHHHHHHH------------HhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhh---------hhhhhhhhh
Q psy6603 571 -KYDEAIKCYRN------------ALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENL---------NEMQCMWFQ 628 (724)
Q Consensus 571 -~~~~A~~~~~~------------al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~ 628 (724)
+++.++..|.+ +++ .-++..+--.+..++...+|++..+...+..... ....-..+
T Consensus 1430 lD~~R~V~l~~~~~~l~lik~yl~~vq-~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~f- 1507 (1630)
T 1xi4_A 1430 LDHTRAVNYFSKVKQLPLVKPYLRSVQ-NHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEF- 1507 (1630)
T ss_pred CChHHHHHHHHHcCChHHhHHHHHHHH-HhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHH-
Confidence 44444444442 122 3455666677788888888877666655543222 22222222
Q ss_pred hhHH-HHHHHhCChhHHHHHHH
Q psy6603 629 TECA-LAYQRLGRWGDTLKKCH 649 (724)
Q Consensus 629 ~~la-~~~~~~g~~~~A~~~~~ 649 (724)
+.+| .+|.+.|+|..|++.++
T Consensus 1508 rrIAa~ly~~n~~~~~ai~l~k 1529 (1630)
T 1xi4_A 1508 RRIAAYLFKGNNRWKQSVELCK 1529 (1630)
T ss_pred HHHHHHHHHhcCcHHHHHHHHH
Confidence 3444 45555599999999886
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.93 E-value=1.5e-24 Score=197.10 Aligned_cols=200 Identities=16% Similarity=0.167 Sum_probs=175.2
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy6603 59 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAM 138 (724)
Q Consensus 59 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 138 (724)
|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhH
Q psy6603 139 AYHLL-----------HDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTV 207 (724)
Q Consensus 139 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 207 (724)
++... |++++|+..++++++.. |+ +..++..+|.++...|++++|+..|+++++.+ +++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 153 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PR----YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEI 153 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cc----cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence 99999 99999999999887765 44 67899999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHH
Q psy6603 208 EETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYIS 266 (724)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~ 266 (724)
+..+|.++...|++++|+..|+++++.+|+++.++..++.+ ...|++++|+..++++..
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999 567999999999887643
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.93 E-value=8.1e-25 Score=222.49 Aligned_cols=229 Identities=11% Similarity=-0.001 Sum_probs=162.5
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCH---HHHHHHHHHHHHcCCCchhHHHHHHHHHhhcC--
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRK---EEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK-- 76 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g-- 76 (724)
++..|++++|+..|+++.+. .++++++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++...|
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~----g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAEL----GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----TCCTGGGTCC-------------------------------CHHHHHHHHHTC--C
T ss_pred HHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCC
Confidence 35679999999999998772 3456889999999999999 9999999999976 6788999999776665
Q ss_pred ---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHH
Q psy6603 77 ---KYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLR-PTQRASWIGFAMAYHLLHDFDMACNI 152 (724)
Q Consensus 77 ---~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 152 (724)
++++|+.+|+++++. +++.+++.||.+|...+..+++...++...... +.++.+++.+|.+|...+.++++...
T Consensus 86 ~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 889999999999984 455699999999998887665555444444332 45688999999999999988777766
Q ss_pred HHHHHHhhccCCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHc----CChHHHH
Q psy6603 153 LEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSG---DLEEAVKHLDRFKEQIHDKLTVEETYGALKLKL----GQYNEAM 225 (724)
Q Consensus 153 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~----g~~~~A~ 225 (724)
...+.+..... .+.+++.+|.++...| ++++|+..|+++.+..|.....++.+|.+|... +++++|+
T Consensus 164 a~~~~~~a~~~------~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 164 VERICKAALNT------TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp HHHHHHHHTTT------CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred HHHHHHHHHcC------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 55554443211 2348999999999999 999999999999999999888889999999766 7899999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHH
Q psy6603 226 KHYESLIERNQENTLYYNKLVEA 248 (724)
Q Consensus 226 ~~~~~~~~~~p~~~~~~~~l~~~ 248 (724)
..|+++. |+++.++..++.+
T Consensus 238 ~~~~~aa---~g~~~a~~~Lg~~ 257 (452)
T 3e4b_A 238 ALLEKIA---PGYPASWVSLAQL 257 (452)
T ss_dssp HHHHHHG---GGSTHHHHHHHHH
T ss_pred HHHHHHc---CCCHHHHHHHHHH
Confidence 9999987 7777766666654
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=6.7e-24 Score=201.71 Aligned_cols=255 Identities=9% Similarity=0.066 Sum_probs=222.8
Q ss_pred cccccchhhHHHHHHHhhCCCCCCCh-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEH-GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 80 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 80 (724)
.|..|+|++|+..++++.. .+|++ .+....++.++...|++++|+..++. .+|....++..++..+...|++++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence 4678999999999999877 66666 46888899999999999999998876 356667778889999999999999
Q ss_pred HHHHHHHHHhh--CCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy6603 81 AIKCYRNALKW--EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRK 158 (724)
Q Consensus 81 A~~~~~~a~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 158 (724)
|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.++.++..+|.++...|++++|+..++++.+
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999875 699999999999999999999999999987 89999999999999999999999999999877
Q ss_pred hhccCCCCChhhHHHHHH--HHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q psy6603 159 TQQVTNSYDFEHSELLLY--QSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQ 236 (724)
Q Consensus 159 ~~~~~p~~~~~~~~~~~~--~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 236 (724)
.. |+ .....+. ...++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++..+|
T Consensus 159 ~~---p~----~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 159 QD---ED----ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HC---TT----CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hC---cC----cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 64 44 1112221 223344568999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHH-hccCChHH-HHHHHHHHHHhCCCCCc
Q psy6603 237 ENTLYYNKLVEA-KQLTNNDD-IFQLLTHYISKYPKATV 273 (724)
Q Consensus 237 ~~~~~~~~l~~~-~~~~~~~~-a~~~~~~~~~~~~~~~~ 273 (724)
+++.++..++.+ ...|+.++ +..+++++++..|++..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 999999999988 56788876 57899999999999854
No 38
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.93 E-value=1.6e-24 Score=220.12 Aligned_cols=286 Identities=14% Similarity=0.115 Sum_probs=238.0
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch----hHHHHHHHHHhhcCCHHHHHHHHHHHHhh------CCC
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH----VCWHVYGLLQRSDKKYDEAIKCYRNALKW------EHD 94 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~~------~p~ 94 (724)
+.....+..+|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|++++.. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34567788999999999999999999999999999987 47899999999999999999999999987 566
Q ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHHh------CCCchhHHHHHHHHHHHcCC-----------------HHHHHH
Q psy6603 95 NIQIMRDLSLLQIQMRDLEGYRETRYQLFML------RPTQRASWIGFAMAYHLLHD-----------------FDMACN 151 (724)
Q Consensus 95 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~~ 151 (724)
...++..+|.++...|++++|+..++++++. .|....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 7789999999999999999999999999988 56677799999999999999 999999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhh------HHHHHHHHHHHcCChHHHH
Q psy6603 152 ILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLT------VEETYGALKLKLGQYNEAM 225 (724)
Q Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~la~~~~~~g~~~~A~ 225 (724)
.++++.+.....++ .+....++..+|.++...|++++|+..+++++...|.... ++..+|.++...|++++|+
T Consensus 205 ~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 205 FYQENLKLMRDLGD-RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 88887776543322 2345668888888899999999999999988888776544 7888888888888888888
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCch
Q psy6603 226 KHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPP 305 (724)
Q Consensus 226 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (724)
..|++++...|...
T Consensus 284 ~~~~~al~~~~~~~------------------------------------------------------------------ 297 (411)
T 4a1s_A 284 EHYKRTLALAVELG------------------------------------------------------------------ 297 (411)
T ss_dssp HHHHHHHHHHHHTT------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcC------------------------------------------------------------------
Confidence 88888877644110
Q ss_pred hhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy6603 306 LFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHT 385 (724)
Q Consensus 306 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 385 (724)
.......++..+|.++...|++++|+.++++++...
T Consensus 298 --------------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 298 --------------------------------------------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 011112255688999999999999999999999875
Q ss_pred CC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q psy6603 386 PT------LIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA 421 (724)
Q Consensus 386 p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 421 (724)
+. ...++..+|.++...|++++|+.++++++++.+.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 43 3558889999999999999999999999988654
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=1.2e-24 Score=207.28 Aligned_cols=238 Identities=9% Similarity=0.059 Sum_probs=213.9
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhH----HHHHHHHHhhcCC
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVC----WHVYGLLQRSDKK 77 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~lg~~~~~~g~ 77 (724)
++..|++++|+..++++++ .+|.++.++..+|.++...|++++|+..++++++ .|.++.. +..+|.++...|+
T Consensus 13 ~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEA--KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHH--TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHccc
Confidence 4678999999999999999 7778888999999999999999999999999999 4444443 8999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6603 78 YDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFR 157 (724)
Q Consensus 78 ~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 157 (724)
+++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|......+++++|+..++++.
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999955555679999999999987
Q ss_pred HhhccCCCCChhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhhh---cc-----HhhHHHHHHHHHHHcCChHHHHH
Q psy6603 158 KTQQVTNSYDFEHSELLLYQSMVIQDSGD---LEEAVKHLDRFKEQI---HD-----KLTVEETYGALKLKLGQYNEAMK 226 (724)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~ 226 (724)
+.. |+ ...++..+|.++...|+ +++|+..++++++.. |+ ...++..+|.++...|++++|+.
T Consensus 170 ~~~---p~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 170 ELK---PN----IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHS---TT----CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhC---cc----chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 765 43 56789999999999999 899999999999886 44 23688999999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHh
Q psy6603 227 HYESLIERNQENTLYYNKLVEAK 249 (724)
Q Consensus 227 ~~~~~~~~~p~~~~~~~~l~~~~ 249 (724)
.|+++++.+|+++.++..++.+.
T Consensus 243 ~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 243 AWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHHHHhcCccHHHHHHHhhhhh
Confidence 99999999999999988887763
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7.1e-24 Score=200.22 Aligned_cols=164 Identities=14% Similarity=0.127 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc-------HHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN-------IQIM 99 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~~ 99 (724)
.++++..+|.+++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..|+++++.+|++ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 45566667777777777777777777777666 666666777777777777777777777776665554 4555
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q psy6603 100 RDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM 179 (724)
Q Consensus 100 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 179 (724)
..+|.++...|++++|+..+++++...|. +.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------------------------------------~~ 113 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------------------------------------------------AD 113 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------------------------------------------------HH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------------------------------------------------hH
Confidence 55555555555555555555555555544 12
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHH
Q psy6603 180 VIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTL 240 (724)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 240 (724)
++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|+++.
T Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 174 (258)
T 3uq3_A 114 ILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR 174 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH
Confidence 4445556666666666666666767777777777777777777777777777777665443
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.2e-24 Score=200.61 Aligned_cols=243 Identities=15% Similarity=0.097 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHH
Q psy6603 97 QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLY 176 (724)
Q Consensus 97 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~ 176 (724)
.++..+|.++...|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++.+..+..+...+....++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 344444555555555555555555555444 4445555555555555555555555555554443332212223678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChH
Q psy6603 177 QSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNND 255 (724)
Q Consensus 177 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~ 255 (724)
+|.++...|++++|+..|++++...|. +.++...|++++|+..+++++..+|.++.++..++.+ ...|+++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999998887 4678888999999999999999999999999999988 5679999
Q ss_pred HHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHh
Q psy6603 256 DIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALS 335 (724)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 335 (724)
+|+..+++++...|...
T Consensus 157 ~A~~~~~~a~~~~~~~~--------------------------------------------------------------- 173 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDA--------------------------------------------------------------- 173 (258)
T ss_dssp HHHHHHHHHHHHCTTCH---------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCcccH---------------------------------------------------------------
Confidence 99999998888776641
Q ss_pred hcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6603 336 KTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA 415 (724)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 415 (724)
.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+..++++
T Consensus 174 --------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 174 --------------------RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp --------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 145578888999999999999999999999999999999999999999999999999999
Q ss_pred HccC------ccchhhhhhHHH
Q psy6603 416 QSLD------TADRYINSKCAK 431 (724)
Q Consensus 416 ~~~~------~~~~~~~~~~~~ 431 (724)
++++ |.+..+...++.
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHHH
Confidence 9988 766665554443
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.9e-23 Score=212.07 Aligned_cols=314 Identities=14% Similarity=0.065 Sum_probs=255.4
Q ss_pred CchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhcchHHHHHHHHHHHHh------CCCc
Q psy6603 60 KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI----QIMRDLSLLQIQMRDLEGYRETRYQLFML------RPTQ 129 (724)
Q Consensus 60 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~ 129 (724)
.....+..+|.++...|++++|+..|++++...|.++ .++..+|.++...|++++|+..+++++.. .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3455688999999999999999999999999999984 57889999999999999999999999877 3456
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCC--------------------HHH
Q psy6603 130 RASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD--------------------LEE 189 (724)
Q Consensus 130 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~--------------------~~~ 189 (724)
..++..+|.++...|++++|+..++++.+..+..++ ......++..+|.++...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 778999999999999999999999998887754443 23456688999999999999 999
Q ss_pred HHHHHHHHhhh------hccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHH
Q psy6603 190 AVKHLDRFKEQ------IHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTH 263 (724)
Q Consensus 190 A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~ 263 (724)
|+..+++++.. .|....++..+|.++...|++++|+..+++++...|...
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------ 221 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG------------------------ 221 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT------------------------
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC------------------------
Confidence 99999998876 344566888999999999999999999998887654211
Q ss_pred HHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCC
Q psy6603 264 YISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQ 343 (724)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 343 (724)
T Consensus 222 -------------------------------------------------------------------------------- 221 (406)
T 3sf4_A 222 -------------------------------------------------------------------------------- 221 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy6603 344 DEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTL------IELFVTKGRIYKHAGDVLEAYKWLDEAQS 417 (724)
Q Consensus 344 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 417 (724)
.+.....++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|++++|+.++++++.
T Consensus 222 ------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 222 ------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 011112356688999999999999999999999887654 77899999999999999999999999998
Q ss_pred cCccc------hhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhh
Q psy6603 418 LDTAD------RYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLK 487 (724)
Q Consensus 418 ~~~~~------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 487 (724)
+.+.. ..++..+|.++...|++++|+..++++++..+.... .... ......+|.++...|+...+..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD-KSGE--LTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHH--HHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-Ccch--hHHHHHHHHHHHHhhHhHHHHH
Confidence 85543 557778999999999999999999999985433211 1111 2234458889999888765543
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=1.9e-23 Score=206.19 Aligned_cols=284 Identities=12% Similarity=0.092 Sum_probs=231.2
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch----hHHHHHHHHHhhcCCHHHHHHHHHHHHhh------CCCcH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH----VCWHVYGLLQRSDKKYDEAIKCYRNALKW------EHDNI 96 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a~~~------~p~~~ 96 (724)
+...++..|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|++++.. .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 456788999999999999999999999999999984 56889999999999999999999999887 44457
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCC--------------------HHHHH
Q psy6603 97 QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQ------RASWIGFAMAYHLLHD--------------------FDMAC 150 (724)
Q Consensus 97 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~--------------------~~~A~ 150 (724)
.++..+|.++...|++++|+..++++++..|.. ..++..+|.++...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 789999999999999999999999999876653 3488999999999999 99999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhh------HHHHHHHHHHHcCChHHH
Q psy6603 151 NILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLT------VEETYGALKLKLGQYNEA 224 (724)
Q Consensus 151 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~la~~~~~~g~~~~A 224 (724)
..++++.......++ .+....++..+|.++...|++++|+..+++++...|.... ++..+|.++...|++++|
T Consensus 164 ~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 164 DLYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 998887766543332 2345667888899999999999999999998887655433 788888888888888888
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCc
Q psy6603 225 MKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVP 304 (724)
Q Consensus 225 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (724)
+..+++++...|...
T Consensus 243 ~~~~~~al~~~~~~~----------------------------------------------------------------- 257 (338)
T 3ro2_A 243 SEYYKKTLLLARQLK----------------------------------------------------------------- 257 (338)
T ss_dssp HHHHHHHHHHHHHTT-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhc-----------------------------------------------------------------
Confidence 888888876543210
Q ss_pred hhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy6603 305 PLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDH 384 (724)
Q Consensus 305 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 384 (724)
.+.....++..+|.++...|++++|+.++++++..
T Consensus 258 ---------------------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 258 ---------------------------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 01111225568888999999999999999999887
Q ss_pred CCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q psy6603 385 TPTL------IELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA 421 (724)
Q Consensus 385 ~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 421 (724)
.|.. ..++..+|.++...|++++|..++++++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6542 558888999999999999999999999987654
No 44
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.92 E-value=4.7e-21 Score=205.23 Aligned_cols=403 Identities=14% Similarity=0.095 Sum_probs=265.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy6603 66 HVYGLLQRSDKKYDEAIKCYRNALKWEHD----NIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYH 141 (724)
Q Consensus 66 ~~lg~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 141 (724)
......|...|.+.+|++.|++++ +.|. +......++.+..+. +.....++..+.-..+ .-.+|.++.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHHHHHHHH
Confidence 445666668888888888888888 4444 333333344444443 3344333333322111 233788888
Q ss_pred HcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCCh
Q psy6603 142 LLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQY 221 (724)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 221 (724)
..|.+++|..+|+++... ..+ +...+...|++++|++.++++ +.+.+|..+|.++...|++
T Consensus 1061 ~lglyEEAf~IYkKa~~~-----------~~A---~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVN-----------TSA---VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred hCCCHHHHHHHHHHcCCH-----------HHH---HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCH
Confidence 888888888888774211 111 122344778888888888755 4577888888888888888
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhh
Q psy6603 222 NEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFH 300 (724)
Q Consensus 222 ~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (724)
++|+..|.++ +++..+..++.+ ...|++++|++++..+.+..+++...
T Consensus 1122 kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id-------------------------- 1170 (1630)
T 1xi4_A 1122 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE-------------------------- 1170 (1630)
T ss_pred HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccccc--------------------------
Confidence 8888888765 777777888877 45688888888888877766543211
Q ss_pred cCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy6603 301 KGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINA 380 (724)
Q Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 380 (724)
..++..|...++... ++.| +. .. .. ..+..+|..+...|++++|..+|.+
T Consensus 1171 -------t~LafaYAKl~rlee----le~f---I~-----------~~--n~---ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1171 -------TELIFALAKTNRLAE----LEEF---IN-----------GP--NN---AHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred -------HHHHHHHHhhcCHHH----HHHH---Hh-----------CC--CH---HHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 112333333333221 2222 11 11 11 1344788888888999999998888
Q ss_pred HHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCCh
Q psy6603 381 AIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENL 460 (724)
Q Consensus 381 ~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 460 (724)
+ ..|..++.++.+.|++++|+++++++ .+..+|...+.++...|++..|........ ..+.
T Consensus 1221 A--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-v~~d----- 1281 (1630)
T 1xi4_A 1221 V--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHAD----- 1281 (1630)
T ss_pred h--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-cCHH-----
Confidence 5 47888888888889999999988888 345667777888888888888887665422 1111
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhh--cCCh
Q psy6603 461 NEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNC--LGRK 538 (724)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~ 538 (724)
....++..|...|.+++|+.+++.. +..+ +.+...+..+|.++.+ .++.
T Consensus 1282 -------eLeeli~yYe~~G~feEAI~LlE~a-------------------L~Le---raH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1282 -------ELEELINYYQDRGYFEELITMLEAA-------------------LGLE---RAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred -------HHHHHHHHHHHcCCHHHHHHHHHHH-------------------hccC---hhHhHHHHHHHHHHHhCCHHHH
Confidence 1123566666666666666655422 4332 5667788777777765 5678
Q ss_pred HHHHHHHHHhhhcCC-----CccchHHHHHHHHhccccHHHHHHHHHHHhhh------------ccccHHHHHHHHHHHH
Q psy6603 539 EEAYEYVRRGLRNDL-----KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW------------EHDNIQIMRDLSLLQI 601 (724)
Q Consensus 539 ~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~ 601 (724)
.++++.|...+.+.| .+...|..+..+|.+-|+++.|+...-..... .+.++++++..+..|+
T Consensus 1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH
Confidence 888889988888777 67778999999999999999998544444332 6778888888888888
Q ss_pred Hhh
Q psy6603 602 QMR 604 (724)
Q Consensus 602 ~~~ 604 (724)
..+
T Consensus 1413 ~~~ 1415 (1630)
T 1xi4_A 1413 EFK 1415 (1630)
T ss_pred hhC
Confidence 666
No 45
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=8.6e-23 Score=207.42 Aligned_cols=284 Identities=12% Similarity=0.062 Sum_probs=239.7
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhcchHHHHHHHHHHHHh------CCC
Q psy6603 59 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI----QIMRDLSLLQIQMRDLEGYRETRYQLFML------RPT 128 (724)
Q Consensus 59 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~ 128 (724)
|.....+..+|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..++++++. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34455577899999999999999999999999999987 48899999999999999999999999988 577
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCC-----------------HHHHH
Q psy6603 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD-----------------LEEAV 191 (724)
Q Consensus 129 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~-----------------~~~A~ 191 (724)
...++..+|.++...|++++|+..++++........+ .+....++..+|.++...|+ +++|+
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 7889999999999999999999999998877544332 34567789999999999999 99999
Q ss_pred HHHHHHhhhh------ccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy6603 192 KHLDRFKEQI------HDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYI 265 (724)
Q Consensus 192 ~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 265 (724)
..+++++... +....++..+|.++...|++++|+..++++++..|....
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------------- 258 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD------------------------- 258 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC-------------------------
Confidence 9999988764 334558889999999999999999999998876542110
Q ss_pred HhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy6603 266 SKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDE 345 (724)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (724)
T Consensus 259 -------------------------------------------------------------------------------- 258 (411)
T 4a1s_A 259 -------------------------------------------------------------------------------- 258 (411)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy6603 346 GEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTL------IELFVTKGRIYKHAGDVLEAYKWLDEAQSLD 419 (724)
Q Consensus 346 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 419 (724)
......++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|++++|+.++++++.+.
T Consensus 259 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 259 -----RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp -----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 01112256688999999999999999999999887643 6789999999999999999999999999885
Q ss_pred ccc------hhhhhhHHHHHHHcCCHHHHHHHHHHhhhcc
Q psy6603 420 TAD------RYINSKCAKYMLRANLIKEAEETCSKFTREG 453 (724)
Q Consensus 420 ~~~------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 453 (724)
+.. ..++..+|.++...|++++|...++++++..
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 442 4477789999999999999999999998743
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.91 E-value=1.6e-22 Score=199.57 Aligned_cols=282 Identities=14% Similarity=0.092 Sum_probs=236.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhcchHHHHHHHHHHHHh------CCCchh
Q psy6603 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI----QIMRDLSLLQIQMRDLEGYRETRYQLFML------RPTQRA 131 (724)
Q Consensus 62 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~ 131 (724)
...+...|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++.. .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 44577889999999999999999999999999984 67889999999999999999999999887 445677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCC--------------------HHHHH
Q psy6603 132 SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD--------------------LEEAV 191 (724)
Q Consensus 132 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~--------------------~~~A~ 191 (724)
++..+|.++...|++++|+..++++.+..+..++ ......++..+|.++...|+ +++|+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 8999999999999999999999998887755443 23456688899999999999 99999
Q ss_pred HHHHHHhhhh------ccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy6603 192 KHLDRFKEQI------HDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYI 265 (724)
Q Consensus 192 ~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 265 (724)
..+++++... |....++..+|.++...|++++|+..++++++..|...
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------------- 217 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------------------------- 217 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--------------------------
Confidence 9999988763 34456888899999999999999999988887644210
Q ss_pred HhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCC
Q psy6603 266 SKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDE 345 (724)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 345 (724)
T Consensus 218 -------------------------------------------------------------------------------- 217 (338)
T 3ro2_A 218 -------------------------------------------------------------------------------- 217 (338)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy6603 346 GEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTL------IELFVTKGRIYKHAGDVLEAYKWLDEAQSLD 419 (724)
Q Consensus 346 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 419 (724)
.+.....++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|++++|+.++++++...
T Consensus 218 ----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 218 ----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 011112256688999999999999999999999876654 7789999999999999999999999999885
Q ss_pred ccc------hhhhhhHHHHHHHcCCHHHHHHHHHHhhhccc
Q psy6603 420 TAD------RYINSKCAKYMLRANLIKEAEETCSKFTREGV 454 (724)
Q Consensus 420 ~~~------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 454 (724)
+.. ..++..++.++...|++++|...++++++..+
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 543 44677899999999999999999999987443
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.91 E-value=5.3e-23 Score=196.23 Aligned_cols=248 Identities=13% Similarity=0.050 Sum_probs=211.1
Q ss_pred ccccchhhHHHHHHHhhCC-C-CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHH
Q psy6603 3 YEHKQYKNGLKFAKQILTN-P-KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 80 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~-p-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 80 (724)
...|++++|+..++++++. | ..|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 4569999999999999982 1 1356789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 81 A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
|+.+|++++..+|.++.++..+|.++...|++++|+..++++++..|+++......+.. ...|++++|+..+.+.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999998766665544 66799999999998877765
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH----hhHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q psy6603 161 QVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK----LTVEETYGALKLKLGQYNEAMKHYESLIERNQ 236 (724)
Q Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 236 (724)
+..+ ....++.++...++.++|+..+.+++...|.. +.++..+|.++...|++++|+..|++++..+|
T Consensus 175 ~~~~--------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 175 DKEQ--------WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp CCCS--------THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred Ccch--------HHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 3322 12346778888999999999999999887754 78999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhccCChHHHHHHH
Q psy6603 237 ENTLYYNKLVEAKQLTNNDDIFQLL 261 (724)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~a~~~~ 261 (724)
++...+. ......|++++|+..+
T Consensus 247 ~~~~~~~--~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HNFVEHR--YALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCHHHH--HHHHHHHHHHHC----
T ss_pred hhHHHHH--HHHHHHHHHHhhHHHH
Confidence 7755431 1224557777777665
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=6.4e-23 Score=191.63 Aligned_cols=215 Identities=12% Similarity=0.079 Sum_probs=185.7
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 106 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 106 (724)
.+.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCC
Q psy6603 107 IQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD 186 (724)
Q Consensus 107 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 186 (724)
...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++.+.. |. ...++..+|.++...|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---EN----DTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---Cc----cHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999987765 33 56789999999999999
Q ss_pred HHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy6603 187 LEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA 248 (724)
Q Consensus 187 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 248 (724)
+++|+..+++++...|+++.++..+|.++...|++++|+..++++++.+|+++.++..++.+
T Consensus 175 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988877665
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=8.9e-22 Score=181.38 Aligned_cols=216 Identities=13% Similarity=0.061 Sum_probs=193.9
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 102 (724)
..|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cchHHHHHHHHHHHH--hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q psy6603 103 SLLQIQM-RDLEGYRETRYQLFM--LRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM 179 (724)
Q Consensus 103 a~~~~~~-~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 179 (724)
|.++... |++++|+..++++++ ..|.+..++..+|.++...|++++|+..++++.+.. |. ...++..+|.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~la~ 155 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---PQ----FPPAFKELAR 155 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT----CHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CchHHHHHHH
Confidence 9999999 999999999999999 667778899999999999999999999988877664 33 5678889999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhc-cHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHH
Q psy6603 180 VIQDSGDLEEAVKHLDRFKEQIH-DKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKL 245 (724)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 245 (724)
++...|++++|+..+++++...| .++.++..++.++...|++++|...++.+....|+++.+...+
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999999999999999 8888888889999999999999999999998999988766544
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.90 E-value=4.8e-22 Score=186.70 Aligned_cols=216 Identities=13% Similarity=0.063 Sum_probs=198.0
Q ss_pred CCCCh-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy6603 23 KYAEH-GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 101 (724)
Q Consensus 23 ~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 101 (724)
.+|.+ +.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34555 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHH--hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH
Q psy6603 102 LSLLQIQMRDLEGYRETRYQLFM--LRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM 179 (724)
Q Consensus 102 la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 179 (724)
+|.++...|++++|+..+++++. ..|.+..++..+|.++...|++++|+..++++.+.. |. ...++..+|.
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~~la~ 183 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RN----QPSVALEMAD 183 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SC----CHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cc----cHHHHHHHHH
Confidence 99999999999999999999999 888899999999999999999999999998887765 33 5678899999
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHH
Q psy6603 180 VIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKL 245 (724)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 245 (724)
++...|++++|+..++++++..|.+..++..++.++...|++++|...++++++..|+++.+...+
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988765543
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=9.8e-23 Score=208.57 Aligned_cols=219 Identities=15% Similarity=0.157 Sum_probs=201.8
Q ss_pred cchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCH-HHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHH
Q psy6603 6 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRK-EEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKC 84 (724)
Q Consensus 6 ~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 84 (724)
+++++++..++.+.. ..|.++.+++.+|.++...|++ ++|+..|+++++.+|+++.+|..+|.++...|++++|+.+
T Consensus 82 ~~~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 347788888888888 6688999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc--------CCHH
Q psy6603 85 YRNALKWEHDNIQIMRDLSLLQIQM---------RDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLL--------HDFD 147 (724)
Q Consensus 85 ~~~a~~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------g~~~ 147 (724)
|+++++++|+ ..++..+|.++... |++++|+..|+++++.+|+++.+|..+|.++... |+++
T Consensus 160 ~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9999999999 79999999999999 9999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHH
Q psy6603 148 MACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKH 227 (724)
Q Consensus 148 ~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 227 (724)
+|+..|+++++..+..+ ..+.+++.+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..
T Consensus 239 ~A~~~~~~al~~~p~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKVDRKAS----SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHCGGGG----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcc----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887753111 36789999999999999999999999999999999999999999999999999999887
Q ss_pred HHHH
Q psy6603 228 YESL 231 (724)
Q Consensus 228 ~~~~ 231 (724)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6554
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=4e-22 Score=176.74 Aligned_cols=171 Identities=11% Similarity=0.116 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 106 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 106 (724)
++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCC
Q psy6603 107 IQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD 186 (724)
Q Consensus 107 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 186 (724)
...++++.|...+.+++..+|.++.++..+|.++.. .|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~-----------------------------------------~g~ 122 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS-----------------------------------------MGE 122 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-----------------------------------------TTC
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-----------------------------------------hCC
Confidence 666666666666655555555555555555555544 455
Q ss_pred HHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCc
Q psy6603 187 LEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQEN 238 (724)
Q Consensus 187 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 238 (724)
+++|++.|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|++
T Consensus 123 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 123 HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 5555555555555555555555555555555555555555555555555544
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.90 E-value=8e-22 Score=174.81 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=148.4
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
++.+|+|++|+..|+++++ .+|+++.++..+|.++...|++++|+..+.+++...|+++.++..+|.++...++++.|
T Consensus 15 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 92 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAA 92 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHH
Confidence 3567999999999999999 77899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
+..+.+++..+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++..
T Consensus 93 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 93 IDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999888888888888887766544
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=1.1e-20 Score=179.61 Aligned_cols=229 Identities=14% Similarity=0.072 Sum_probs=208.3
Q ss_pred CCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhh----cCCHHHHHHHHHHHHhhCCCcHHHH
Q psy6603 24 YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS----DKKYDEAIKCYRNALKWEHDNIQIM 99 (724)
Q Consensus 24 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~ 99 (724)
.|.++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .|++++|+.+|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 357889999999999999999999999999998 7888999999999999 999999999999999875 89999
Q ss_pred HHHHHHHHH----hcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhccCCCCChhhH
Q psy6603 100 RDLSLLQIQ----MRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL----LHDFDMACNILEAFRKTQQVTNSYDFEHS 171 (724)
Q Consensus 100 ~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 171 (724)
+.+|.++.. .+++++|+..|+++++.+ ++.++..+|.++.. .+++++|+..++++.+.. ..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---------~~ 146 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---------DG 146 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---------CH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---------cH
Confidence 999999999 999999999999999874 88999999999999 999999999999987753 45
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHH----cCChHHHHHHHHHHHHHcCCcHHHHH
Q psy6603 172 ELLLYQSMVIQD----SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLK----LGQYNEAMKHYESLIERNQENTLYYN 243 (724)
Q Consensus 172 ~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 243 (724)
.++..+|.++.. .+++++|+..|+++++.. ++.++..+|.++.. .+++++|+..|+++++..| +.++.
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~ 222 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCF 222 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHH
Confidence 688999999999 999999999999999874 57889999999999 9999999999999999866 77888
Q ss_pred HHHHHh-c----cCChHHHHHHHHHHHHhCCCC
Q psy6603 244 KLVEAK-Q----LTNNDDIFQLLTHYISKYPKA 271 (724)
Q Consensus 244 ~l~~~~-~----~~~~~~a~~~~~~~~~~~~~~ 271 (724)
.++.++ . .+++++|+..|+++++..|..
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 888884 4 789999999999999998865
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=2.1e-22 Score=192.06 Aligned_cols=189 Identities=15% Similarity=0.037 Sum_probs=125.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc----CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy6603 34 KGLTLNCLGRKEEAYEYVRRGLRN----DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 109 (724)
Q Consensus 34 ~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 109 (724)
++..+...|++++|+..|+++++. +|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 344455668888888888888876 3556777888888888888888888888888888888888888888888888
Q ss_pred cchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHH
Q psy6603 110 RDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEE 189 (724)
Q Consensus 110 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 189 (724)
|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++.+.. |+ ........+ +....|++++
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~----~~~~~~~~~-~~~~~~~~~~ 162 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PN----DPFRSLWLY-LAEQKLDEKQ 162 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT----CHHHHHHHH-HHHHHHCHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CC----ChHHHHHHH-HHHHhcCHHH
Confidence 888888888888888888887777777777777777777777666665543 22 111111111 2233355555
Q ss_pred HHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHH
Q psy6603 190 AVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESL 231 (724)
Q Consensus 190 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 231 (724)
|+..+++++...|++...+. ++.++...++.++|+..++++
T Consensus 163 A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~ 203 (275)
T 1xnf_A 163 AKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKAD 203 (275)
T ss_dssp HHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHH
Confidence 55555555544444433322 333344444444444444443
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.89 E-value=4.6e-22 Score=185.76 Aligned_cols=209 Identities=14% Similarity=0.121 Sum_probs=185.7
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
++..|++++|+..++++++ .+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|
T Consensus 33 ~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 110 (243)
T 2q7f_A 33 GSEFGDYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEA 110 (243)
T ss_dssp ---------CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHH
Confidence 4678999999999999999 77889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQ 161 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 161 (724)
+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 189 (243)
T 2q7f_A 111 KDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD- 189 (243)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred cCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcC
Q psy6603 162 VTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLG 219 (724)
Q Consensus 162 ~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 219 (724)
|. ...++..+|.++...|++++|+..++++++.+|+++.++..++.+....|
T Consensus 190 --~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 190 --PG----HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp --TT----CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred --cc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 33 56789999999999999999999999999999999999888877665444
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.89 E-value=5.7e-21 Score=175.93 Aligned_cols=212 Identities=11% Similarity=0.012 Sum_probs=197.3
Q ss_pred cCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHH
Q psy6603 57 NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGF 136 (724)
Q Consensus 57 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 136 (724)
..|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++..|.+..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHH
Q psy6603 137 AMAYHLL-HDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALK 215 (724)
Q Consensus 137 a~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 215 (724)
|.++... |++++|+..++++.+ .+..|. ...++..+|.++...|++++|+..++++++..|.++.++..+|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPTYPT----PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STTCSC----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcCCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 9999999 999999999999877 333343 6789999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHHcC-CcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCc
Q psy6603 216 LKLGQYNEAMKHYESLIERNQ-ENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATV 273 (724)
Q Consensus 216 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (724)
...|++++|+..+++++...| .++..+..++.+ ...|+.+.+..+++.+....|++..
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999 999888887777 5679999999999999999998754
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=1.7e-20 Score=178.11 Aligned_cols=232 Identities=13% Similarity=0.043 Sum_probs=180.7
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hcchHHHHHHHHHHHHhCCCchhHH
Q psy6603 58 DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ----MRDLEGYRETRYQLFMLRPTQRASW 133 (724)
Q Consensus 58 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~ 133 (724)
+|+++.+++.+|.++...|++++|+.+|+++++ |+++.+++.+|.++.. .+++++|+..|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 467788888888888888888888888888887 7778888888888888 888888888888888775 67788
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhhhccHh
Q psy6603 134 IGFAMAYHL----LHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD----SGDLEEAVKHLDRFKEQIHDKL 205 (724)
Q Consensus 134 ~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~p~~~ 205 (724)
..+|.++.. .+++++|+..|+++.+.. .+.++..+|.++.. .+++++|+..|+++++.. ++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~ 146 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DG 146 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cH
Confidence 888888888 888888888877766542 45677777888877 788888888888777754 45
Q ss_pred hHHHHHHHHHHH----cCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccc
Q psy6603 206 TVEETYGALKLK----LGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNY 281 (724)
Q Consensus 206 ~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 281 (724)
.++..+|.++.. .+++++|+..|+++++..+ +.
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~----------------------------------------- 183 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--SP----------------------------------------- 183 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HH-----------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HH-----------------------------------------
Confidence 567777777777 7777777777777665421 11
Q ss_pred cCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHH
Q psy6603 282 VSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYL 361 (724)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 361 (724)
+++.+
T Consensus 184 ---------------------------------------------------------------------------a~~~l 188 (273)
T 1ouv_A 184 ---------------------------------------------------------------------------GCFNA 188 (273)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 33467
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCccchh
Q psy6603 362 AQHYDH----LGDTMKALNYINAAIDHTPTLIELFVTKGRIYKH----AGDVLEAYKWLDEAQSLDTADRY 424 (724)
Q Consensus 362 a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~~~~~~ 424 (724)
|.+|.. .+++++|+.+++++++..| +.++..+|.++.. .+++++|+.+|+++++.+|.+..
T Consensus 189 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 189 GNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 777777 8899999999999988866 7788899999998 89999999999999998886543
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=5.1e-21 Score=176.27 Aligned_cols=210 Identities=12% Similarity=0.056 Sum_probs=177.7
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDL-KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 103 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 103 (724)
+.++..++.+|.+++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45668999999999999999999999999999998 88889999999999999999999999999999999999999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHhCCCch-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChh--hHHHH
Q psy6603 104 LLQIQMRDLEGYRETRYQLFMLRPTQR-------ASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFE--HSELL 174 (724)
Q Consensus 104 ~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~--~~~~~ 174 (724)
.++...|++++|+..++++++.+|+++ .++..+|.++...|++++|+..|+++++.. | . ...++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~ 156 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---S----KKWKTDAL 156 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---C----HHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---C----CcccHHHH
Confidence 999999999999999999999999988 668888888889999999988888766543 3 4 56788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy6603 175 LYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA 248 (724)
Q Consensus 175 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 248 (724)
..+|.++...|+ ..++++....+.+... ..+......+.+++|+..|+++++.+|+++.+...++.+
T Consensus 157 ~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 157 YSLGVLFYNNGA-----DVLRKATPLASSNKEK--YASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHH-----HHHHHHGGGTTTCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHhcccCCHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 888888876553 3455555555444333 234445566778999999999999999999888877766
No 60
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=2.9e-21 Score=193.50 Aligned_cols=303 Identities=12% Similarity=0.067 Sum_probs=220.9
Q ss_pred ccccchhhHHHHHHHhhC-CCCCCChHHHHHHH----HHHHhccCCHHHHH-----------HHHHHHHHcCCCchh---
Q psy6603 3 YEHKQYKNGLKFAKQILT-NPKYAEHGETLAMK----GLTLNCLGRKEEAY-----------EYVRRGLRNDLKSHV--- 63 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~-~p~~p~~~~~~~~~----a~~~~~~g~~~~A~-----------~~~~~~l~~~p~~~~--- 63 (724)
..++++++|..+++.+.+ -+.-..+.+.+... .......+++..+. +.++++-. .|....
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~~~~~~~l 101 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQARLTGLL 101 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HTHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cCCCchhHH
Confidence 457889999999998766 11212333333221 12222234444444 55555332 333322
Q ss_pred ---HHHHHHHHHhhcCCHHHHHHHHHHHHhh---CCC---cHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC------
Q psy6603 64 ---CWHVYGLLQRSDKKYDEAIKCYRNALKW---EHD---NIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT------ 128 (724)
Q Consensus 64 ---~~~~lg~~~~~~g~~~~A~~~~~~a~~~---~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------ 128 (724)
.++.+|.++...|++++|+..|++++.+ .|+ ...++..+|.++...|++++|+..++++++..+.
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 2445899999999999999999999987 233 4568999999999999999999999999987543
Q ss_pred -chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----hh-
Q psy6603 129 -QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKE-----QI- 201 (724)
Q Consensus 129 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~- 201 (724)
...++..+|.++...|++++|+..++++++..+..++ ......++..+|.++...|++++|+..+++++. .+
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ-PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 3458889999999999999999999998887755443 344567888999999999999999999999998 45
Q ss_pred ccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccc
Q psy6603 202 HDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNY 281 (724)
Q Consensus 202 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 281 (724)
|..+.++..+|.++...|++++|+..+++++...+....
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------------------- 299 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD----------------------------------------- 299 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------------------------------------
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----------------------------------------
Confidence 777888999999999999999999999998876431100
Q ss_pred cCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHH
Q psy6603 282 VSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYL 361 (724)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 361 (724)
+.... .+..+
T Consensus 300 ---------------------------------------------------------------------~~~~~-~~~~l 309 (383)
T 3ulq_A 300 ---------------------------------------------------------------------VIYLS-EFEFL 309 (383)
T ss_dssp ---------------------------------------------------------------------HHHHH-HHHHH
T ss_pred ---------------------------------------------------------------------HHHHH-HHHHH
Confidence 00000 12356
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy6603 362 AQHYDHLGD---TMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLD 419 (724)
Q Consensus 362 a~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 419 (724)
+.++...|+ +++|+..+++. ...|....++..+|.++...|++++|..++++++++.
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 777777777 77777777776 4445566788888999999999999999998888763
No 61
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.88 E-value=6.1e-21 Score=179.14 Aligned_cols=213 Identities=12% Similarity=0.051 Sum_probs=197.6
Q ss_pred HcCCCc-hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHH
Q psy6603 56 RNDLKS-HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWI 134 (724)
Q Consensus 56 ~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 134 (724)
..+|.. +.++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|.+..++.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 456665 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHH
Q psy6603 135 GFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGAL 214 (724)
Q Consensus 135 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 214 (724)
.+|.++...|++++|+..++++.. .+..| ....++..+|.++...|++++|+..+++++...|.++.++..+|.+
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~-~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQ-DTLYP----ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTT-CTTCT----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh-CccCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 999999999999999999988766 22334 3778999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCc
Q psy6603 215 KLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATV 273 (724)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (724)
+...|++++|+..++++++..|++...+..++.+ ...|++++|...+++++...|++..
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999999999999888 5689999999999999999998743
No 62
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.88 E-value=1.9e-22 Score=193.85 Aligned_cols=392 Identities=14% Similarity=0.058 Sum_probs=193.1
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHH
Q psy6603 37 TLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYR 116 (724)
Q Consensus 37 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~ 116 (724)
.....|+.++|.+++++. +++.+|..+|.++...|++++|+..|.++ +++..+..++..+...|++++|+
T Consensus 12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 345678888888888887 33458888899988889999999888763 45668888888888888899998
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6603 117 ETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDR 196 (724)
Q Consensus 117 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 196 (724)
.+++.+.+..|+ +.+...++.+|.+.|++.++.++++ .|+ ..+|..+|..+...|.+++|..+|.+
T Consensus 82 ~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn-----~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 82 KYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN--------GPN-----NAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------CHHHHTTTTT--------CC---------------------CTTTHHHHHHH
T ss_pred HHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc--------CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888877775433 6677788888888898888875553 232 34888889999999999999999886
Q ss_pred HhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccc
Q psy6603 197 FKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPK 275 (724)
Q Consensus 197 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (724)
+ ..+..+|.++.++|++++|++.++++ +++..|...... ...|+++.|......+
T Consensus 148 a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----------- 203 (449)
T 1b89_A 148 V--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHI----------- 203 (449)
T ss_dssp T--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----------
T ss_pred h--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----------
Confidence 6 46788899999999999999999888 366667666555 5677877774322110
Q ss_pred cccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHH
Q psy6603 276 RLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALL 355 (724)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 355 (724)
...|..
T Consensus 204 -----------------------------------------------------------------------~~~ad~--- 209 (449)
T 1b89_A 204 -----------------------------------------------------------------------VVHADE--- 209 (449)
T ss_dssp -----------------------------------------------------------------------TTCHHH---
T ss_pred -----------------------------------------------------------------------HhCHhh---
Confidence 111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHccCc-----cchhhhhh
Q psy6603 356 WVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHA--GDVLEAYKWLDEAQSLDT-----ADRYINSK 428 (724)
Q Consensus 356 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~-----~~~~~~~~ 428 (724)
...++..|.+.|.+++|+.++++++..+|.+...+..+|.++.+- ++..+.++.|...+.+.| .+..+|..
T Consensus 210 --l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 210 --LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHH
T ss_pred --HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 114567788899999999999999999999999999999988764 477788888887777777 77888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHH
Q psy6603 429 CAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKF 508 (724)
Q Consensus 429 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~ 508 (724)
++.+|..-++++.|...+-... +..+... .
T Consensus 288 ~~~ly~~~~e~d~A~~tm~~h~---~~a~~~~-----------------------------------------------~ 317 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIITMMNHP---TDAWKEG-----------------------------------------------Q 317 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHST---TTTCCHH-----------------------------------------------H
T ss_pred HHHHHHhhchHHHHHHHHHhCC---hhhhhhH-----------------------------------------------H
Confidence 8899999999998887544432 2222211 0
Q ss_pred HHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhh--hcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhc
Q psy6603 509 AKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL--RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE 586 (724)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 586 (724)
|+.+.. .+.+.+.++.....|. +....++..+..++ .+|+ ......+.+.|+..-...+++.+..
T Consensus 318 f~~~~~---kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~------~r~v~~~~~~~~l~l~~~yl~~v~~-- 384 (449)
T 1b89_A 318 FKDIIT---KVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH------TRAVNYFSKVKQLPLVKPYLRSVQN-- 384 (449)
T ss_dssp HHHHHH---HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH------HHHHHHHHHTTCTTTTHHHHHHHHT--
T ss_pred HHHHHh---chhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc------HHHHHHHHHcCCcHHHHHHHHHHHH--
Confidence 111111 1345556666666666 55556666676666 3443 2233445667777777777766654
Q ss_pred cccHHHHHHHHHHHHHhhhHhhHHHHHHH
Q psy6603 587 HDNIQIMRDLSLLQIQMRDLEGYREGVSA 615 (724)
Q Consensus 587 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 615 (724)
-++..+--.+-.++...+|++..+..++.
T Consensus 385 ~n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 385 HNNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45677777888899999999988887775
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.88 E-value=4.2e-20 Score=185.09 Aligned_cols=177 Identities=12% Similarity=0.107 Sum_probs=139.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc-------cHh
Q psy6603 133 WIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIH-------DKL 205 (724)
Q Consensus 133 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~ 205 (724)
++.+|..+...|++++|+..++++.+.....++ ....+.++..+|.++...|++++|+..+++++...+ ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 445788888888888888888888776554443 334677888888888889999999999888888743 334
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccCch
Q psy6603 206 TVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGD 285 (724)
Q Consensus 206 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (724)
.++..+|.++...|++++|+..|+++++..|...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------------------------- 218 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK---------------------------------------------- 218 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------------------------------------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC----------------------------------------------
Confidence 5788888888888888888888888887644211
Q ss_pred hHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q psy6603 286 QFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHY 365 (724)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 365 (724)
.+.....++..+|.+|
T Consensus 219 ----------------------------------------------------------------~~~~~~~~~~~lg~~y 234 (383)
T 3ulq_A 219 ----------------------------------------------------------------QPQLMGRTLYNIGLCK 234 (383)
T ss_dssp ----------------------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------ChHHHHHHHHHHHHHH
Confidence 1111223566899999
Q ss_pred HhcCCHHHHHHHHHHHHh-----cC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc
Q psy6603 366 DHLGDTMKALNYINAAID-----HT-PTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDT 420 (724)
Q Consensus 366 ~~~~~~~~A~~~~~~~l~-----~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 420 (724)
...|++++|+.+++++++ .+ |..+.++..+|.++...|++++|+.++++++.+.+
T Consensus 235 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 235 NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 56 88889999999999999999999999999988743
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.5e-20 Score=181.54 Aligned_cols=222 Identities=11% Similarity=0.082 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHhh-------cCCH-------HHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHh
Q psy6603 45 EEAYEYVRRGLRNDLKSHVCWHVYGLLQRS-------DKKY-------DEAIKCYRNALK-WEHDNIQIMRDLSLLQIQM 109 (724)
Q Consensus 45 ~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~a~~-~~p~~~~~~~~la~~~~~~ 109 (724)
++|+..|++++..+|+++.+|+.+|..+.. .|++ ++|+..|++++. ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999998864 5885 899999999999 7999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH-cCCH
Q psy6603 110 RDLEGYRETRYQLFMLRPTQRA-SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD-SGDL 187 (724)
Q Consensus 110 ~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~g~~ 187 (724)
|++++|...|+++++..|.++. +|..++.++.+.|++++|+.+|+++++.. |. ...++...+..... .|++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~----~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RT----RHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TC----CTHHHHHHHHHHHHTSCCH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CC----CHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999887 99999999999999999999998877654 33 34455555555333 7999
Q ss_pred HHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHH---cCC-cHHHHHHHHHH-hccCChHHHHHHHH
Q psy6603 188 EEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIER---NQE-NTLYYNKLVEA-KQLTNNDDIFQLLT 262 (724)
Q Consensus 188 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~-~~~~~~~~a~~~~~ 262 (724)
++|+..|+++++.+|+++.++..++.++...|++++|+..|++++.. .|+ ....|..++.+ ...|+.+.|..++.
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999995 553 67788888887 55799999999999
Q ss_pred HHHHhCCCCCc
Q psy6603 263 HYISKYPKATV 273 (724)
Q Consensus 263 ~~~~~~~~~~~ 273 (724)
++++.+|+...
T Consensus 266 ~a~~~~p~~~~ 276 (308)
T 2ond_A 266 RRFTAFREEYE 276 (308)
T ss_dssp HHHHHTTTTTS
T ss_pred HHHHHcccccc
Confidence 99999998653
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.8e-20 Score=180.89 Aligned_cols=223 Identities=14% Similarity=0.079 Sum_probs=202.8
Q ss_pred hhHHHHHHHhhCCCCCCChHHHHHHHHHHHhc-------cCCH-------HHHHHHHHHHHH-cCCCchhHHHHHHHHHh
Q psy6603 9 KNGLKFAKQILTNPKYAEHGETLAMKGLTLNC-------LGRK-------EEAYEYVRRGLR-NDLKSHVCWHVYGLLQR 73 (724)
Q Consensus 9 ~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~-------~g~~-------~~A~~~~~~~l~-~~p~~~~~~~~lg~~~~ 73 (724)
++|+..|++++. .+|.++++|+.+|..+.. .|++ ++|+..|+++++ .+|++..+|..+|.++.
T Consensus 33 ~~a~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLL--VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 689999999999 778999999999998874 5886 999999999999 79999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH-cCCHHHHHH
Q psy6603 74 SDKKYDEAIKCYRNALKWEHDNIQ-IMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL-LHDFDMACN 151 (724)
Q Consensus 74 ~~g~~~~A~~~~~~a~~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~ 151 (724)
..|++++|...|+++++..|.++. +|..+|.++...|++++|...|+++++..|....+|...+..... .|++++|+.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999987 999999999999999999999999999999998888877766543 799999999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh---hcc-HhhHHHHHHHHHHHcCChHHHHHH
Q psy6603 152 ILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQ---IHD-KLTVEETYGALKLKLGQYNEAMKH 227 (724)
Q Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~ 227 (724)
+|+++++.. |+ ...++..++..+...|++++|+..|++++.. .|+ ...+|..++..+...|++++|...
T Consensus 191 ~~~~al~~~---p~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 191 IFELGLKKY---GD----IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHH---TT----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHhC---CC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999988876 43 5679999999999999999999999999995 453 577899999999999999999999
Q ss_pred HHHHHHHcCCcHH
Q psy6603 228 YESLIERNQENTL 240 (724)
Q Consensus 228 ~~~~~~~~p~~~~ 240 (724)
++++++..|++..
T Consensus 264 ~~~a~~~~p~~~~ 276 (308)
T 2ond_A 264 EKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHTTTTTS
T ss_pred HHHHHHHcccccc
Confidence 9999999998653
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.87 E-value=3.4e-21 Score=197.12 Aligned_cols=212 Identities=9% Similarity=0.011 Sum_probs=197.8
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCH-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHH
Q psy6603 43 RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKY-DEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121 (724)
Q Consensus 43 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 121 (724)
++++++..+++.....|.+..+++.+|.++...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+..|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367788888888888999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHhCCCchhHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc--------
Q psy6603 122 LFMLRPTQRASWIGFAMAYHLL---------HDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS-------- 184 (724)
Q Consensus 122 ~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------- 184 (724)
+++.+|+ ..++..+|.++... |++++|+..++++++.. |+ ...++..+|.++...
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VL----DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999 69999999999999 99999999999988765 43 667999999999999
Q ss_pred CCHHHHHHHHHHHhhhhc---cHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHh-ccCChHHHHHH
Q psy6603 185 GDLEEAVKHLDRFKEQIH---DKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAK-QLTNNDDIFQL 260 (724)
Q Consensus 185 g~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~~a~~~ 260 (724)
|++++|+..|+++++.+| +++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++ ..|++++|+..
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999999999999999984 56888888765
Q ss_pred HH
Q psy6603 261 LT 262 (724)
Q Consensus 261 ~~ 262 (724)
+.
T Consensus 315 ~~ 316 (474)
T 4abn_A 315 KG 316 (474)
T ss_dssp TT
T ss_pred hc
Confidence 53
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=9.7e-21 Score=200.51 Aligned_cols=174 Identities=13% Similarity=0.111 Sum_probs=136.6
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 102 (724)
..|++++++..+|.++..+|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46788888888999999999999999999999988888888888889998888999999999999988888888888888
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHH
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQ 182 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 182 (724)
|.++..+|++++|++.|+++++++|++..++..+|.++...|++++|+..|+++++.. |+ +..++..+|.++.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~----~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PD----FPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SC----CHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----ChHHHhhhhhHHH
Confidence 8888888888888888888888888888888877777777777777776666655443 33 4456666666666
Q ss_pred HcCCHHHHHHHHHHHhhhhcc
Q psy6603 183 DSGDLEEAVKHLDRFKEQIHD 203 (724)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~~p~ 203 (724)
..|++++|++.+++++++.|+
T Consensus 157 ~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HTTCCTTHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhChh
Confidence 666666666666666655544
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.86 E-value=2.6e-17 Score=172.01 Aligned_cols=487 Identities=8% Similarity=0.036 Sum_probs=299.0
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc---hHHHHHHH
Q psy6603 43 RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD---LEGYRETR 119 (724)
Q Consensus 43 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~ 119 (724)
...+-+..|++.+..+|.+...|..+.......+.++.+...|++++...|.....|...+..-...++ ++.+..+|
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 345677889999999999999999999999999999999999999999999999999999999888888 99999999
Q ss_pred HHHHHhCC--CchhHHHHHHHHHHHcCCH--------HHHHHHHHHHHHhhcc-CCCCChhhHHHHHHHHHHHH------
Q psy6603 120 YQLFMLRP--TQRASWIGFAMAYHLLHDF--------DMACNILEAFRKTQQV-TNSYDFEHSELLLYQSMVIQ------ 182 (724)
Q Consensus 120 ~~~l~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~------ 182 (724)
++++...| .++..|..........++. +....+|+.++..... ++. ...+|........
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~----s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPK----SIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSS----CHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCccccc----chHHHHHHHHHHHhccccC
Confidence 99999984 5777888887766665543 3344677877777665 554 3345544433322
Q ss_pred ---HcCCHHHHHHHHHHHhhhhccH-h-hHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHH
Q psy6603 183 ---DSGDLEEAVKHLDRFKEQIHDK-L-TVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDI 257 (724)
Q Consensus 183 ---~~g~~~~A~~~~~~~~~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a 257 (724)
..++.+.+..+|++++.. |.. . ..|......-...+.. .+...+.. . ..++..|
T Consensus 203 ~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~-~a~~~~~e---~----------------~~~y~~A 261 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQL-TARRHIGE---L----------------SAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTT-THHHHHHH---H----------------HHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcc-hHHHHHHH---h----------------hHHHHHH
Confidence 234456677777777753 322 1 1221111111110100 01111000 0 0112222
Q ss_pred HHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhc
Q psy6603 258 FQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKT 337 (724)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 337 (724)
...+.+.......-... ..... . .......|.. +
T Consensus 262 r~~~~e~~~~~~~l~r~--~p~~~-~-------------~~~~~~~p~~-----------~------------------- 295 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRN--LPITL-N-------------QATESNLPKP-----------N------------------- 295 (679)
T ss_dssp HHHHHHHHHHTTTCCCC--CCSSS-T-------------TCCTTTSCCT-----------T-------------------
T ss_pred HHHHHHHHHHHHhHhhc--ccccc-c-------------cchhccCCCC-----------c-------------------
Confidence 22222221111100000 00000 0 0000000000 0
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH
Q psy6603 338 GHFSLQDEGEVEPASALLWVYHYLAQHYDHLG--------DTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAY 409 (724)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~ 409 (724)
.........|. .... +.+.. ........|++++...|.+++.|+..+..+...|+.++|.
T Consensus 296 ---------~~~~~ql~lW~--~yi~-fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 296 ---------EYDVQQLLIWL--EWIR-WESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp ---------CCCHHHHHHHH--HHHH-HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred ---------hhHHHHHHHHH--HHHH-HHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 00111112222 1111 11111 1345678899999999999999999999999999999997
Q ss_pred -HHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhh
Q psy6603 410 -KWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKK 488 (724)
Q Consensus 410 -~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 488 (724)
..|++++...|.+..++..++......|+++.|..+|++++...+.... .+-......++.+..
T Consensus 364 r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~---------------~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 364 TKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA---------------ALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH---------------HHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh---------------hhhhccCcchhhhhh
Confidence 9999999999999988999999999999999999999998862110000 000000000000000
Q ss_pred hhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc-CCCccchHHHHHHHHh
Q psy6603 489 CHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN-DLKSHVCWHVYGLLQR 567 (724)
Q Consensus 489 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 567 (724)
+ ......+|...+....+.|..+.|..+|.+|++. .+....+|...+.+..
T Consensus 429 -----------------------~-----~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 429 -----------------------L-----KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp -----------------------H-----HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred -----------------------h-----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 0 0012336777777777777788888888888776 3334456666666655
Q ss_pred ccc-cHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhh----hhhhhhhhhHHHHHHHhCChh
Q psy6603 568 SDK-KYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNE----MQCMWFQTECALAYQRLGRWG 642 (724)
Q Consensus 568 ~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~ 642 (724)
..+ +++.|.++|+++++..|+++..+...+......|+.+.|+..|+.+....+ ....| ......-...|+.+
T Consensus 481 ~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw--~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 481 HISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIF--QKVIFFESKVGSLN 558 (679)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHH--HHHHHHHHHTCCSH
T ss_pred HhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHcCCHH
Confidence 554 378888888888888888877777777777777888888888887776554 22445 33344556778888
Q ss_pred HHHHHHHHHHHHHhh
Q psy6603 643 DTLKKCHEVDRHFSE 657 (724)
Q Consensus 643 ~A~~~~~~~~~~~~~ 657 (724)
.+.++.+++.+.+|+
T Consensus 559 ~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 559 SVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 888888877777654
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=4e-20 Score=174.13 Aligned_cols=198 Identities=14% Similarity=0.053 Sum_probs=174.5
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---H
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS---HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---I 96 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~ 96 (724)
..|.++..++.+|..++..|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|++ +
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 456888999999999999999999999999999999998 8889999999999999999999999999998854 6
Q ss_pred HHHHHHHHHHHH--------hcchHHHHHHHHHHHHhCCCchhHH-----------------HHHHHHHHHcCCHHHHHH
Q psy6603 97 QIMRDLSLLQIQ--------MRDLEGYRETRYQLFMLRPTQRASW-----------------IGFAMAYHLLHDFDMACN 151 (724)
Q Consensus 97 ~~~~~la~~~~~--------~~~~~~A~~~~~~~l~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~ 151 (724)
.+++.+|.++.. .|++++|+..|+++++..|+++.+. +.+|.++...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 789999999999 9999999999999999999987766 888999999999999999
Q ss_pred HHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc----------CCHHHHHHHHHHHhhhhccHhh---HHHHHHHHHHHc
Q psy6603 152 ILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS----------GDLEEAVKHLDRFKEQIHDKLT---VEETYGALKLKL 218 (724)
Q Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~---~~~~la~~~~~~ 218 (724)
.|+++++..+.++. ...+++.+|.++... |++++|+..|+++++..|+++. +...++.++...
T Consensus 170 ~~~~~l~~~p~~~~----~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~ 245 (261)
T 3qky_A 170 TYEAVFDAYPDTPW----ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRL 245 (261)
T ss_dssp HHHHHHHHCTTSTT----HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCch----HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHH
Confidence 99998887755443 678999999999977 8889999999999999988753 555666666666
Q ss_pred CChHHH
Q psy6603 219 GQYNEA 224 (724)
Q Consensus 219 g~~~~A 224 (724)
++++++
T Consensus 246 ~~~~~~ 251 (261)
T 3qky_A 246 TELEGD 251 (261)
T ss_dssp HHHHTC
T ss_pred HHhhhh
Confidence 655543
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.85 E-value=2.8e-20 Score=171.25 Aligned_cols=185 Identities=11% Similarity=-0.031 Sum_probs=139.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHH
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTP-TLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLR 435 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 435 (724)
.++.+|.++...|++++|+..|+++++..| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 667999999999999999999999999998 8889999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcC
Q psy6603 436 ANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTN 515 (724)
Q Consensus 436 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 515 (724)
.|++++|+..++++++..|.........
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~---------------------------------------------------- 116 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLY---------------------------------------------------- 116 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHH----------------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHH----------------------------------------------------
Confidence 9999999999999998766542211111
Q ss_pred CCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCC--ccchHHHHHHHHhccc-----------------------
Q psy6603 516 PKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK--SHVCWHVYGLLQRSDK----------------------- 570 (724)
Q Consensus 516 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~----------------------- 570 (724)
..++..+|.++...|++++|+..|+++++.+|+ ++.+++.+|.++...|
T Consensus 117 ------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 190 (228)
T 4i17_A 117 ------AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKA 190 (228)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHH
T ss_pred ------HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 124455555555555555555555555555555 5555555555554444
Q ss_pred ----cHHHHHHHHHHHhhhccccHHHHHHHHHH
Q psy6603 571 ----KYDEAIKCYRNALKWEHDNIQIMRDLSLL 599 (724)
Q Consensus 571 ----~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 599 (724)
.+++|+.+|+++++++|+++.+...++.+
T Consensus 191 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 191 KADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 44777777777777777776666666544
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=1.8e-20 Score=198.52 Aligned_cols=176 Identities=12% Similarity=0.087 Sum_probs=166.1
Q ss_pred cCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHH
Q psy6603 57 NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGF 136 (724)
Q Consensus 57 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 136 (724)
..|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHH
Q psy6603 137 AMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKL 216 (724)
Q Consensus 137 a~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 216 (724)
|.++...|++++|+..|+++++.. |+ +..++..+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~---P~----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN---PA----FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 999999999999999999887764 54 77899999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHHcCCcH
Q psy6603 217 KLGQYNEAMKHYESLIERNQENT 239 (724)
Q Consensus 217 ~~g~~~~A~~~~~~~~~~~p~~~ 239 (724)
.+|++++|++.+++++++.|+..
T Consensus 157 ~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp HTTCCTTHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhChhHH
Confidence 99999999999999999876543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=182.55 Aligned_cols=250 Identities=12% Similarity=0.077 Sum_probs=201.4
Q ss_pred CCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh-
Q psy6603 21 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN--------DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW- 91 (724)
Q Consensus 21 ~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~- 91 (724)
.+.+|..+.++..+|.++...|++++|+..++++++. .|....++..+|.++...|++++|+..|++++..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999999999984 6777788999999999999999999999999987
Q ss_pred -------CCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCchhHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6603 92 -------EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLR--------PTQRASWIGFAMAYHLLHDFDMACNILEAF 156 (724)
Q Consensus 92 -------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 156 (724)
.|....++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+..++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35567799999999999999999999999999874 667788999999999999999999999998
Q ss_pred HHhhccCC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc---------------HhhHHHHHHHHHHHcCC
Q psy6603 157 RKTQQVTN-SYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHD---------------KLTVEETYGALKLKLGQ 220 (724)
Q Consensus 157 ~~~~~~~p-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~---------------~~~~~~~la~~~~~~g~ 220 (724)
.+...... ...+....++..+|.++...|++++|+..+++++...|. ....+...+..+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 88754331 123457788999999999999999999999999987554 23344455556666777
Q ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCC
Q psy6603 221 YNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPK 270 (724)
Q Consensus 221 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~ 270 (724)
+.+|...+.++....|....++..++.+ ...|++++|+..++++++..|.
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 8888889999998889999999999998 5679999999999999988664
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.85 E-value=2.9e-17 Score=171.61 Aligned_cols=428 Identities=8% Similarity=-0.004 Sum_probs=284.4
Q ss_pred hhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCC---HHHHHHH
Q psy6603 8 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKK---YDEAIKC 84 (724)
Q Consensus 8 ~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~ 84 (724)
..+-+..+++.+. .+|.+...|..+.......+.++.+..+|++++...|.....|..........|+ ++.+...
T Consensus 48 ~~d~i~~lE~~l~--~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIE--EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4456677888888 7789999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhhCC--CcHHHHHHHHHHHHHhcch--------HHHHHHHHHHHHh----CCCchhHHHHHHHHHH---------
Q psy6603 85 YRNALKWEH--DNIQIMRDLSLLQIQMRDL--------EGYRETRYQLFML----RPTQRASWIGFAMAYH--------- 141 (724)
Q Consensus 85 ~~~a~~~~p--~~~~~~~~la~~~~~~~~~--------~~A~~~~~~~l~~----~p~~~~~~~~la~~~~--------- 141 (724)
|++++...| .++..|..........++. +.....|++++.. +|.....|........
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999999984 6777888777666665554 3344777877763 6767778877766543
Q ss_pred HcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHH-------------HHHHcCCHHHHHHHHHHHh------hh-h
Q psy6603 142 LLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM-------------VIQDSGDLEEAVKHLDRFK------EQ-I 201 (724)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------------~~~~~g~~~~A~~~~~~~~------~~-~ 201 (724)
..++.+.+..+|++++. . |... ....|..... +-....+|+.|...+.+.- .. .
T Consensus 206 eq~~~~~~R~iy~raL~-i---P~~~--~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLC-Q---PMDC--LESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp HHHHHHHHHHHHHHHTT-S---CCSS--HHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred HHhHHHHHHHHHHHHHh-C---ccHH--HHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 23456778888877663 2 3211 1122211110 0111234455555554321 11 1
Q ss_pred cc-------------------HhhHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHcCCcHHHHHHHHHHh-ccCCh
Q psy6603 202 HD-------------------KLTVEETYGALKLKLG-------QYNEAMKHYESLIERNQENTLYYNKLVEAK-QLTNN 254 (724)
Q Consensus 202 p~-------------------~~~~~~~la~~~~~~g-------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~ 254 (724)
|. ....|......-...+ ........|++++...|.++..|...+..+ ..|+.
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcH
Confidence 11 1123444333322221 123456789999999999999999988884 45777
Q ss_pred HHHH-HHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHH
Q psy6603 255 DDIF-QLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEA 333 (724)
Q Consensus 255 ~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (724)
++|. .+|++++...|.+.
T Consensus 360 ~~a~r~il~rAi~~~P~s~------------------------------------------------------------- 378 (679)
T 4e6h_A 360 STVITKYLKLGQQCIPNSA------------------------------------------------------------- 378 (679)
T ss_dssp TTHHHHHHHHHHHHCTTCH-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCH-------------------------------------------------------------
Confidence 7886 88888887776541
Q ss_pred HhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------CC-----------hHHH
Q psy6603 334 LSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHT-----------PT-----------LIEL 391 (724)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----------p~-----------~~~~ 391 (724)
. +++..+......|++++|..+|++++... |. ...+
T Consensus 379 --------------------~--Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 379 --------------------V--LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp --------------------H--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred --------------------H--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 1 33356677777899999999999988752 42 3446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcc-CccchhhhhhHHHHHHHcCC-HHHHHHHHHHhhhcccCccCChhHHHHHHHH
Q psy6603 392 FVTKGRIYKHAGDVLEAYKWLDEAQSL-DTADRYINSKCAKYMLRANL-IKEAEETCSKFTREGVSAMENLNEMQCMWFQ 469 (724)
Q Consensus 392 ~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (724)
|...+.+..+.|+.+.|...|.+|++. .+....++...+.+..+.++ ++.|..+|+.+++.
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~----------------- 499 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY----------------- 499 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------
Confidence 677777777777777777777777765 22233334333444433332 55555555555431
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhh
Q psy6603 470 TECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL 549 (724)
Q Consensus 470 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 549 (724)
+|.++..|...+......|+.+.|..+|++++
T Consensus 500 ------------------------------------------------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 500 ------------------------------------------------FATDGEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp ------------------------------------------------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred ------------------------------------------------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 23344456666666677788888888888888
Q ss_pred hcCCC---ccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHH
Q psy6603 550 RNDLK---SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 591 (724)
Q Consensus 550 ~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 591 (724)
...|+ ....|......-...|+.+.+.++++++.+..|+++.
T Consensus 532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 532 DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 87763 4457777777777788888888888888888887653
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.9e-20 Score=180.88 Aligned_cols=264 Identities=14% Similarity=0.114 Sum_probs=198.9
Q ss_pred cCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHh---
Q psy6603 57 NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW--------EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFML--- 125 (724)
Q Consensus 57 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--- 125 (724)
.+|....++..+|.++...|++++|+..|++++++ .|....++..+|.++...|++++|+..+++++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35667788999999999999999999999999985 5667889999999999999999999999999987
Q ss_pred -----CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC-CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q psy6603 126 -----RPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVT-NSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKE 199 (724)
Q Consensus 126 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 199 (724)
.|....++..+|.++...|++++|+..++++.+..... +...+....++..+|.++...|++++|+..+++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46677899999999999999999999999988775322 111245778899999999999999999999999998
Q ss_pred h--------hccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q psy6603 200 Q--------IHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKA 271 (724)
Q Consensus 200 ~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (724)
. .|....++..+|.++...|++++|+..++++++..|.... +.. .+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~-------------------~~~~ 237 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF-----GSV-------------------DDEN 237 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH-----C-------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-----CCC-------------------Ccch
Confidence 8 6777889999999999999999999999999987553110 000 0000
Q ss_pred CccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCch
Q psy6603 272 TVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPA 351 (724)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 351 (724)
. ..
T Consensus 238 --------------------------------~---------------------------------------------~~ 240 (311)
T 3nf1_A 238 --------------------------------K---------------------------------------------PI 240 (311)
T ss_dssp --------------------------------C---------------------------------------------CH
T ss_pred --------------------------------H---------------------------------------------HH
Confidence 0 00
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q psy6603 352 SALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA 421 (724)
Q Consensus 352 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 421 (724)
......+..++..+...+.+.+|...+.++....|..+.++..+|.++...|++++|+.+|++++++.|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 0000022233444445677777888888888888888899999999999999999999999999887664
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=3.8e-19 Score=177.57 Aligned_cols=172 Identities=20% Similarity=0.108 Sum_probs=125.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-------ch
Q psy6603 64 CWHVYGLLQRSDKKYDEAIKCYRNALKWEH------DNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT-------QR 130 (724)
Q Consensus 64 ~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-------~~ 130 (724)
.++..|..+...|++++|+..|++++.+.+ ....++..+|.++...|+++.|+..++++++..+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 356678888888888888888888876632 23457778888888888888888888888776443 23
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----hhccHh
Q psy6603 131 ASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKE-----QIHDKL 205 (724)
Q Consensus 131 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~ 205 (724)
.++..+|.++...|++++|+..++++++..+..++ ......++..+|.++...|++++|+..+++++. .+|..+
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 46677788888888888888888777776543332 223456777778888888888888888888877 566667
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q psy6603 206 TVEETYGALKLKLGQYNEAMKHYESLIERNQ 236 (724)
Q Consensus 206 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 236 (724)
.++..+|.++...|++++|+..++++++..+
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7777788888888888888887777777643
No 76
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.83 E-value=1.4e-18 Score=162.64 Aligned_cols=235 Identities=11% Similarity=0.044 Sum_probs=200.2
Q ss_pred ccch-hhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCchhHHHHHHHHH----hhc--
Q psy6603 5 HKQY-KNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLG--RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQ----RSD-- 75 (724)
Q Consensus 5 ~~~~-~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~----~~~-- 75 (724)
.|++ ++|+..+++++. .+|++..+|...+.++...| ++++++..+..++..+|++..+|+..+.++ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccc
Confidence 4555 589999999999 77888899999999999998 999999999999999999999999998888 666
Q ss_pred -CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC------H
Q psy6603 76 -KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE--GYRETRYQLFMLRPTQRASWIGFAMAYHLLHD------F 146 (724)
Q Consensus 76 -g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~------~ 146 (724)
+++++++.++.++++.+|.+..+|...+.+....|.++ ++++.+.++++.+|.+..+|..++.++...|+ +
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 78999999999999999999999999999999999888 99999999999999999999999999888887 8
Q ss_pred HHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHH-HHHHHHHHhhhh---ccHhhHHHHHHHHHHHcCChH
Q psy6603 147 DMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEE-AVKHLDRFKEQI---HDKLTVEETYGALKLKLGQYN 222 (724)
Q Consensus 147 ~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~-A~~~~~~~~~~~---p~~~~~~~~la~~~~~~g~~~ 222 (724)
+++++.+++++... |+ +..+|..++.++...|+... ...++.+++... |.++.++..++.++.+.|+.+
T Consensus 203 ~eEl~~~~~aI~~~---p~----n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 203 DEELNYVKDKIVKC---PQ----NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHC---SS----CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhC---CC----CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 88888877766655 44 66789899999988888555 445777777665 778888999999999999999
Q ss_pred HHHHHHHHHHH-HcCCcHHHHHHHHHH
Q psy6603 223 EAMKHYESLIE-RNQENTLYYNKLVEA 248 (724)
Q Consensus 223 ~A~~~~~~~~~-~~p~~~~~~~~l~~~ 248 (724)
+|++.|+.+.+ .+|-...+|...+..
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 99999999887 689888888776654
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=1.6e-19 Score=172.48 Aligned_cols=219 Identities=11% Similarity=0.004 Sum_probs=176.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCC------chhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc------HH
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK------SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN------IQ 97 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~------~~ 97 (724)
.+...|.++...|++++|+..|.+++...+. ...++..+|.++...|++++|+.+|++++.+.|.. ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444577888999999999999999987532 25679999999999999999999999999987643 45
Q ss_pred HHHHHHHHHHHh-cchHHHHHHHHHHHHhCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhh
Q psy6603 98 IMRDLSLLQIQM-RDLEGYRETRYQLFMLRPTQ------RASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEH 170 (724)
Q Consensus 98 ~~~~la~~~~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 170 (724)
++..+|.++... |++++|+..|++++++.|.. ..++..+|.++...|++++|+..|+++.+..+..+......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 889999999996 99999999999999998754 46788999999999999999999999888765544322234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhH-----HHHHHHHHH--HcCChHHHHHHHHHHHHHcCCcHHHHH
Q psy6603 171 SELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTV-----EETYGALKL--KLGQYNEAMKHYESLIERNQENTLYYN 243 (724)
Q Consensus 171 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~ 243 (724)
..++..+|.++...|++++|+..|++++.++|+.... +..++..+. ..+++++|+..|++++.++|.....+.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 4578899999999999999999999999999986553 444555554 457899999999999988887776666
Q ss_pred HHHHH
Q psy6603 244 KLVEA 248 (724)
Q Consensus 244 ~l~~~ 248 (724)
.+...
T Consensus 279 ~~k~~ 283 (292)
T 1qqe_A 279 KIKES 283 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=2.1e-18 Score=172.20 Aligned_cols=248 Identities=10% Similarity=-0.022 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCc------cchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHH
Q psy6603 391 LFVTKGRIYKHAGDVLEAYKWLDEAQSLDT------ADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQ 464 (724)
Q Consensus 391 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 464 (724)
.++.+|..+...|++++|+..|++++.+.+ ....++..+|.++...|++++|+..+.++++..+........
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~-- 180 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR-- 180 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH--
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh--
Confidence 577889999999999999999999998733 235677889999999999999999999999865543321222
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHH
Q psy6603 465 CMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEY 544 (724)
Q Consensus 465 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 544 (724)
.......+|.++...|++++|+..|. +|+.+.+... ..+....++.++|.++...|++++|+..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~-------------~al~~~~~~~---~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLE-------------AALELAMDIQ---NDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH-------------HHHHHHHHTT---CHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHH-------------HHHHHHHHcC---CHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 23344568999999999999999855 4454443321 2224566899999999999999999999
Q ss_pred HHHhhh-----cCCCccchHHHHHHHHhccccHHHHHHHHHHHhhh-----ccccHHHHHHHHHHHHHhhh---HhhHHH
Q psy6603 545 VRRGLR-----NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW-----EHDNIQIMRDLSLLQIQMRD---LEGYRE 611 (724)
Q Consensus 545 ~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~---~~~a~~ 611 (724)
|+++++ .+|..+.++..+|.++...|++++|+.++++++++ +|........++.++...|+ +..|..
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999 78888889999999999999999999999999997 45556667778888888888 556666
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q psy6603 612 GVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEI 658 (724)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 658 (724)
.++.....+.....+ ..+|.+|...|++++|+..|+++++..+.+
T Consensus 325 ~~~~~~~~~~~~~~~--~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 325 YFEKKNLHAYIEACA--RSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HHHHTTCHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 555533322233444 679999999999999999999999775443
No 79
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.83 E-value=2.1e-19 Score=161.94 Aligned_cols=171 Identities=12% Similarity=0.115 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHH----------------HHHHHhhcCCHHHHHHHHHHHHh
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHV----------------YGLLQRSDKKYDEAIKCYRNALK 90 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~a~~ 90 (724)
+++.++..|..+...|++++|+..|+++++.+|+++.+|+. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHH--HHHHHHHHHHHhhccCCCCCh
Q psy6603 91 WEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFD--MACNILEAFRKTQQVTNSYDF 168 (724)
Q Consensus 91 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~~~~p~~~~ 168 (724)
++|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+.+ .+...+... . .|.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~---~--~~~--- 154 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL---S--SPT--- 154 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCC---
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---h--CCC---
Confidence 999999999999999999999999999999999999999999999999998776544 344333332 1 122
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHh
Q psy6603 169 EHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKL 205 (724)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 205 (724)
....+++.+|.++...|++++|+..|+++++.+|+..
T Consensus 155 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 2334677788888889999999999999999998753
No 80
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.83 E-value=6.8e-20 Score=154.86 Aligned_cols=141 Identities=11% Similarity=0.056 Sum_probs=133.6
Q ss_pred ccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHH
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAI 82 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 82 (724)
..+|++++|+..+++++. ..|+++..++.+|.+|+..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+
T Consensus 8 ~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHH
Confidence 456999999999999999 778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHH-HHHHHHhCCCchhHHHHHHHHHHHcCC
Q psy6603 83 KCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRET-RYQLFMLRPTQRASWIGFAMAYHLLHD 145 (724)
Q Consensus 83 ~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~-~~~~l~~~p~~~~~~~~la~~~~~~g~ 145 (724)
..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 86 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 86 ECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999887765 599999999999999999999988875
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=1.4e-18 Score=163.63 Aligned_cols=185 Identities=13% Similarity=0.052 Sum_probs=163.1
Q ss_pred HHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCc--
Q psy6603 55 LRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQ-- 129 (724)
Q Consensus 55 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-- 129 (724)
....|.++..++.+|..+...|++++|+..|++++...|++ +.+++.+|.++...|++++|+..|+++++..|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 35678899999999999999999999999999999999999 8999999999999999999999999999998854
Q ss_pred -hhHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhhccCCCCChhhHHHH--------------HHHHHHHHHcCC
Q psy6603 130 -RASWIGFAMAYHL--------LHDFDMACNILEAFRKTQQVTNSYDFEHSELL--------------LYQSMVIQDSGD 186 (724)
Q Consensus 130 -~~~~~~la~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~--------------~~~~~~~~~~g~ 186 (724)
+.+++.+|.++.. .|++++|+..|+++++..+.++. ...+. +.+|.++...|+
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL----VDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5789999999999 99999999999999888755543 23333 788999999999
Q ss_pred HHHHHHHHHHHhhhhcc---HhhHHHHHHHHHHHc----------CChHHHHHHHHHHHHHcCCcHHHHH
Q psy6603 187 LEEAVKHLDRFKEQIHD---KLTVEETYGALKLKL----------GQYNEAMKHYESLIERNQENTLYYN 243 (724)
Q Consensus 187 ~~~A~~~~~~~~~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~ 243 (724)
+++|+..|+++++..|+ .+.++..+|.++..+ |++++|+..|+++++..|+++.+..
T Consensus 164 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 99999999999999888 567899999999877 8899999999999999998865433
No 82
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=2.7e-20 Score=179.02 Aligned_cols=224 Identities=10% Similarity=0.037 Sum_probs=93.5
Q ss_pred ccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHH
Q psy6603 5 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKC 84 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 84 (724)
.|++++|..+++++ . ++.+|..+|.++...|++++|++.|.++ +++..+...+..+...|++++|+.+
T Consensus 16 ~~~ld~A~~fae~~-~------~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERC-N------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC-C------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 37788999988887 2 2259999999999999999999999764 4566889999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCC
Q psy6603 85 YRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 85 ~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p 164 (724)
++.+.+..+ ++.+...++.+|.+.|++.++.++++ .| +..+|..+|..+...|+|++|...|..+
T Consensus 84 l~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 84 LQMARKKAR-ESYVETELIFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 999988544 47788899999999999999998874 24 4469999999999999999999998863
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHH
Q psy6603 165 SYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNK 244 (724)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 244 (724)
..+..+|.++.+.|++++|++.++++ .++.+|...+.++...|+++.|..+...++ ..|++ ...
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~---l~~ 212 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE---LEE 212 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHH---HHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhh---HHH
Confidence 36778999999999999999999998 367889999999999999999988777633 55544 334
Q ss_pred HHHHh-ccCChHHHHHHHHHHHHhCCCC
Q psy6603 245 LVEAK-QLTNNDDIFQLLTHYISKYPKA 271 (724)
Q Consensus 245 l~~~~-~~~~~~~a~~~~~~~~~~~~~~ 271 (724)
+..++ +.|.+++|+.+++.++...+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 55554 5799999999999988776544
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.81 E-value=1.3e-17 Score=166.50 Aligned_cols=231 Identities=13% Similarity=0.030 Sum_probs=182.9
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCh-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchh------HHHHHHHH
Q psy6603 3 YEHKQYKNGLKFAKQILTNPKYAEH-----GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV------CWHVYGLL 71 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l~~p~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~lg~~ 71 (724)
+..|++++|+..+++++. ..|.. ..++..+|.++...|++++|+..+++++...|.... ++..+|.+
T Consensus 25 ~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALE--ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHTTCHHHHHHHHHHHHH--TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 457999999999999888 22322 236788999999999999999999999987654432 36788999
Q ss_pred HhhcCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-----chhHHHHHHH
Q psy6603 72 QRSDKKYDEAIKCYRNALKWE--------HDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT-----QRASWIGFAM 138 (724)
Q Consensus 72 ~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~la~ 138 (724)
+...|++++|+..|++++... |....++..+|.++...|++++|...+++++...|. ...++..+|.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 999999999999999999874 334567888999999999999999999999998775 2357888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH----hhHHHHHHHH
Q psy6603 139 AYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK----LTVEETYGAL 214 (724)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~la~~ 214 (724)
++...|++++|...++++....................++.++...|++++|...+++++...|.. ...+..++.+
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 999999999999999998877533221001111122244566889999999999999998776543 2256788899
Q ss_pred HHHcCChHHHHHHHHHHHHHc
Q psy6603 215 KLKLGQYNEAMKHYESLIERN 235 (724)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~~~ 235 (724)
+...|++++|...+++++...
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~ 283 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENA 283 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999988887653
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.81 E-value=3.2e-18 Score=163.49 Aligned_cols=215 Identities=14% Similarity=0.049 Sum_probs=141.9
Q ss_pred HHHHhcchHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHH
Q psy6603 105 LQIQMRDLEGYRETRYQLFMLRPT------QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQS 178 (724)
Q Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 178 (724)
++...|++++|+..|.+++++.+. ...++..+|.++...|++++|+..++++++..+...+ ......++..+|
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg 124 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRGANFKFELG 124 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 445555555555555555554321 2345666666666666777766666666655433222 112345777889
Q ss_pred HHHHHc-CCHHHHHHHHHHHhhhhccH------hhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhcc
Q psy6603 179 MVIQDS-GDLEEAVKHLDRFKEQIHDK------LTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQL 251 (724)
Q Consensus 179 ~~~~~~-g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 251 (724)
.++... |++++|+..|++++++.|.. ..++..+|.++..+|++++|+..|+++++..|++.....
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------- 196 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW-------- 196 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG--------
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH--------
Confidence 999996 99999999999999988754 457888899999999999999999988887775422100
Q ss_pred CChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHH
Q psy6603 252 TNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYV 331 (724)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (724)
T Consensus 197 -------------------------------------------------------------------------------- 196 (292)
T 1qqe_A 197 -------------------------------------------------------------------------------- 196 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHH-----HHHHHHHHH--HcCC
Q psy6603 332 EALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIEL-----FVTKGRIYK--HAGD 404 (724)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----~~~l~~~~~--~~g~ 404 (724)
.....++.+|.++...|++++|+..|+++++++|+.... +..++..+. ..++
T Consensus 197 ---------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 197 ---------------------SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp ---------------------GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred ---------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 001134577888888899999999999999888875543 344555554 4567
Q ss_pred HHHHHHHHHHHHccCccchhhhhhH
Q psy6603 405 VLEAYKWLDEAQSLDTADRYINSKC 429 (724)
Q Consensus 405 ~~~A~~~~~~a~~~~~~~~~~~~~~ 429 (724)
+++|+..|++++.++|....+...+
T Consensus 256 ~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHhccCCccHHHHHHHHHHH
Confidence 8899999988888888765555443
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.81 E-value=1.1e-16 Score=159.82 Aligned_cols=278 Identities=14% Similarity=0.065 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh--------cc
Q psy6603 132 SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI--------HD 203 (724)
Q Consensus 132 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------p~ 203 (724)
++..+|.++...|++++|...++++....+..++ ......++..+|.++...|++++|+..+++++... |.
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 3445555555556666666555555554433222 11223456677888888888888888888887765 33
Q ss_pred HhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCccccccccccC
Q psy6603 204 KLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVS 283 (724)
Q Consensus 204 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (724)
...++..+|.++...|++++|...+++++...|...
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------------- 169 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-------------------------------------------- 169 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC--------------------------------------------
Confidence 455677788888888888888888888877655210
Q ss_pred chhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHH
Q psy6603 284 GDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQ 363 (724)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 363 (724)
++. ...++..+|.
T Consensus 170 ------------------------------------------------------------------~~~-~~~~~~~la~ 182 (373)
T 1hz4_A 170 ------------------------------------------------------------------PQQ-QLQCLAMLIQ 182 (373)
T ss_dssp ------------------------------------------------------------------GGG-GHHHHHHHHH
T ss_pred ------------------------------------------------------------------cHH-HHHHHHHHHH
Confidence 000 1124557888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC--hHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHccCccchh----hhhhHHHH
Q psy6603 364 HYDHLGDTMKALNYINAAIDHTPT--LIELFV-----TKGRIYKHAGDVLEAYKWLDEAQSLDTADRY----INSKCAKY 432 (724)
Q Consensus 364 ~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~-----~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~ 432 (724)
++...|++++|...+++++...+. .+..+. .++.++...|++++|...+++++...|.+.. ....++.+
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 888899999999999998876322 211111 3445577889999999999888877654321 23455666
Q ss_pred HHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHH
Q psy6603 433 MLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQI 512 (724)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~ 512 (724)
+...|++++|...+++++...+.
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~--------------------------------------------------------- 285 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARS--------------------------------------------------------- 285 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHHHHh---------------------------------------------------------
Confidence 66666666666666655431110
Q ss_pred hcCCCCC-chhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccc
Q psy6603 513 LTNPKYA-EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 588 (724)
Q Consensus 513 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 588 (724)
. ..+ ....++..+|.++...|++++|...+++++...+.... ...+...| +.....+++.+...|.
T Consensus 286 --~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~-----~~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 286 --L-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF-----ISHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp --T-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCC-----CHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred --C-cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccH-----HHHHHHcc--HHHHHHHHHHHhCCCC
Confidence 0 111 12246777888888888888888888888877543221 12333444 5677777777777775
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=4.6e-19 Score=189.71 Aligned_cols=191 Identities=11% Similarity=-0.005 Sum_probs=170.4
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHH--------HcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL--------RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 94 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~ 94 (724)
.+|.++.+++..| ...|++++|++.+++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4566667777766 88999999999999999 899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHH
Q psy6603 95 NIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELL 174 (724)
Q Consensus 95 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~ 174 (724)
+..+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++ +..|+++++.. |+ +..++
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~---P~----~~~a~ 537 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN---DG----VISAA 537 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC---TT----CHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC---Cc----hHHHH
Confidence 999999999999999999999999999999999999999999999999999999 99998877765 44 66799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHH
Q psy6603 175 LYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEA 224 (724)
Q Consensus 175 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A 224 (724)
+.+|.++...|++++|+..|+++++.+|++..++..+|.++...++.+++
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------C
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCC
Confidence 99999999999999999999999999999999999999999887763333
No 87
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.80 E-value=1.6e-17 Score=155.49 Aligned_cols=220 Identities=11% Similarity=0.101 Sum_probs=185.3
Q ss_pred cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCccchhhhhhHHHHH----HHc---CC
Q psy6603 368 LGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAG--DVLEAYKWLDEAQSLDTADRYINSKCAKYM----LRA---NL 438 (724)
Q Consensus 368 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~----~~~---g~ 438 (724)
....++|+..+++++.++|++..+|+.++.++...| ++++++.++++++..+|++..++...+.++ ... ++
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 46 EEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 344579999999999999999999999999999999 999999999999999999998888777776 444 45
Q ss_pred HHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCC
Q psy6603 439 IKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKY 518 (724)
Q Consensus 439 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 518 (724)
+++++..+.++++ .+
T Consensus 126 ~~~EL~~~~~~l~-----------------------------------------------------------------~~ 140 (306)
T 3dra_A 126 PYREFDILEAMLS-----------------------------------------------------------------SD 140 (306)
T ss_dssp THHHHHHHHHHHH-----------------------------------------------------------------HC
T ss_pred HHHHHHHHHHHHH-----------------------------------------------------------------hC
Confidence 5555555555443 34
Q ss_pred CchhHHHHhhhhHhhhcCChH--HHHHHHHHhhhcCCCccchHHHHHHHHhcccc------HHHHHHHHHHHhhhccccH
Q psy6603 519 AEHGETLAMKGLTLNCLGRKE--EAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKK------YDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 519 ~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------~~~A~~~~~~al~~~p~~~ 590 (724)
|.+..+|+.++.++...|.++ ++++.++++++.+|.|..+|+..+.++...|+ ++++++++.+++..+|+|.
T Consensus 141 pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~ 220 (306)
T 3dra_A 141 PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNP 220 (306)
T ss_dssp TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCH
T ss_pred CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCc
Confidence 566779999999999999998 99999999999999999999999999999988 9999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHhh-HHHHHHHHHhhh---h-hhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHH
Q psy6603 591 QIMRDLSLLQIQMRDLEG-YREGVSAMENLN---E-MQCMWFQTECALAYQRLGRWGDTLKKCHEVDRH 654 (724)
Q Consensus 591 ~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~---~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 654 (724)
.++..++.++...|.... +.+....+.... + +..++ ..+|.+|.+.|+.++|++.|+.+.++
T Consensus 221 SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al--~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 221 STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL--ETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 999999999999988544 445555555443 2 22333 66889999999999999999998864
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=7.2e-19 Score=168.33 Aligned_cols=231 Identities=14% Similarity=0.094 Sum_probs=185.2
Q ss_pred cccchhhHHHHHHHhhC------CCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--------CCCchhHHHHHH
Q psy6603 4 EHKQYKNGLKFAKQILT------NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN--------DLKSHVCWHVYG 69 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~------~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg 69 (724)
..|++++|+..+++++. .+..|..+.++..+|.++...|++++|+..++++++. .|....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45788888888887766 2244778899999999999999999999999999976 366677899999
Q ss_pred HHHhhcCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--------CCCchhHH
Q psy6603 70 LLQRSDKKYDEAIKCYRNALKW--------EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFML--------RPTQRASW 133 (724)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~ 133 (724)
.++...|++++|+..|++++.. +|....++..+|.++...|++++|+..++++++. .|....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999988 4667789999999999999999999999999998 77788899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhccCC--CCChhhHHHHHHHHHHHHHcC------CHHHHHHHHHHHhhhhccHh
Q psy6603 134 IGFAMAYHLLHDFDMACNILEAFRKTQQVTN--SYDFEHSELLLYQSMVIQDSG------DLEEAVKHLDRFKEQIHDKL 205 (724)
Q Consensus 134 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~g------~~~~A~~~~~~~~~~~p~~~ 205 (724)
..+|.++...|++++|+..++++.+..+..+ .........+...+......+ .+.++...++......|...
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999999887643211 112224445666666655533 35556666666666668888
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy6603 206 TVEETYGALKLKLGQYNEAMKHYESLIER 234 (724)
Q Consensus 206 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (724)
.++..+|.++...|++++|+..|+++++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999864
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.79 E-value=7.7e-18 Score=153.98 Aligned_cols=188 Identities=7% Similarity=-0.073 Sum_probs=146.4
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH---HHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH---VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ---IMR 100 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~---~~~ 100 (724)
++..++.+|..++..|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|+++++..|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 457899999999999999999999999999988765 57999999999999999999999999999998864 789
Q ss_pred HHHHHHHH------------------hcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q psy6603 101 DLSLLQIQ------------------MRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQV 162 (724)
Q Consensus 101 ~la~~~~~------------------~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 162 (724)
.+|.++.. .|++++|+..|+++++..|+++.++..+..+... ..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~--------------~~---- 144 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL--------------KD---- 144 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH--------------HH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH--------------HH----
Confidence 99999876 4677788888888888877776654332221110 00
Q ss_pred CCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHh---hHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCc
Q psy6603 163 TNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKL---TVEETYGALKLKLGQYNEAMKHYESLIERNQEN 238 (724)
Q Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 238 (724)
......+.+|.++...|++++|+..|+++++..|+++ .++..+|.++.++|++++|+..++.+....|++
T Consensus 145 ------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 145 ------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 0122345667788888888888888888888877654 567888888888888888888888777776654
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.79 E-value=4.6e-18 Score=181.97 Aligned_cols=185 Identities=12% Similarity=0.031 Sum_probs=165.1
Q ss_pred ccccchhhHHHHHHHhh--------CCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhh
Q psy6603 3 YEHKQYKNGLKFAKQIL--------TNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS 74 (724)
Q Consensus 3 ~~~~~~~~A~~~~~~~l--------~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 74 (724)
+..|++++|+..+++++ + .+|.++.+++.+|.++...|++++|+..|+++++.+|++..+|+.+|.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 45789999999999999 6 6788999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHH
Q psy6603 75 DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILE 154 (724)
Q Consensus 75 ~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 154 (724)
.|++++|+..|+++++++|+++.++..+|.++...|++++ +..|+++++.+|+++.+++.+|.++...|++++|+..|+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999998887
Q ss_pred HHHHhhccCCCCChhhHHHHHHHHHHHHHcCC--------HHHHHHHHHHH
Q psy6603 155 AFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD--------LEEAVKHLDRF 197 (724)
Q Consensus 155 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~~ 197 (724)
++. ..+|+ +..++..+|.++...++ +++|...+...
T Consensus 559 ~al---~l~P~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 559 EVP---PTSRH----FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp TSC---TTSTT----HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred hhc---ccCcc----cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 744 44565 78899999999877665 44555554444
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.79 E-value=7.8e-18 Score=149.53 Aligned_cols=171 Identities=15% Similarity=0.112 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 106 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 106 (724)
....+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCC
Q psy6603 107 IQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD 186 (724)
Q Consensus 107 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 186 (724)
...|++++|...+++++...|.++.++..+|.++...|++++|+..++++.+.. |. ...++..+|.++...|+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---PN----EGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---cc----chHHHHHHHHHHHHcCC
Confidence 777777777777777777777766666666666666666666666555544433 22 23445555555555555
Q ss_pred HHHHHHHHHHHhhhhccH
Q psy6603 187 LEEAVKHLDRFKEQIHDK 204 (724)
Q Consensus 187 ~~~A~~~~~~~~~~~p~~ 204 (724)
+++|+..+++++...|++
T Consensus 160 ~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 160 HEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 555555555555554443
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=8.2e-19 Score=148.20 Aligned_cols=147 Identities=16% Similarity=0.066 Sum_probs=131.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcch
Q psy6603 33 MKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDL 112 (724)
Q Consensus 33 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~ 112 (724)
.+|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH-HHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCC
Q psy6603 113 EGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNI-LEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD 186 (724)
Q Consensus 113 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 186 (724)
++|+..|+++++++|+++.++..+|.++...|++++|... ++++++.. |+ ++.++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P~----~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---PG----SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---TT----CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---cC----CHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999887765 47776655 44 56788888888887775
No 93
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.78 E-value=8e-17 Score=151.27 Aligned_cols=235 Identities=13% Similarity=0.094 Sum_probs=203.5
Q ss_pred ccchh-hHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCchhHHHHHHHHHh
Q psy6603 5 HKQYK-NGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGR----------KEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73 (724)
Q Consensus 5 ~~~~~-~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 73 (724)
.|++. +|+..++.++. .+|.+..+|...+.++...|. +++++.++..++..+|++..+|+..+.++.
T Consensus 42 ~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 42 AGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp TTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 46666 79999999999 889999999999999988776 689999999999999999999999999999
Q ss_pred hcC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc-------
Q psy6603 74 SDK--KYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD-LEGYRETRYQLFMLRPTQRASWIGFAMAYHLL------- 143 (724)
Q Consensus 74 ~~g--~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------- 143 (724)
..| .+++++.++.++++.+|.|..+|...+.+....|. ++++++++.++++.+|.+..+|..++.++...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 999 49999999999999999999999999999999999 59999999999999999999999999999887
Q ss_pred -------CCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhhhhccHh
Q psy6603 144 -------HDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS-----------GDLEEAVKHLDRFKEQIHDKL 205 (724)
Q Consensus 144 -------g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~ 205 (724)
+.++++++.+.+++... |+ +..+|+++..++... +.++++++.++++++..|++.
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~---P~----d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTD---PN----DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHS---TT----CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccccchHHHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 45788888887766655 54 667887666666554 468899999999999999987
Q ss_pred hHHHHHHHHHH---HcCChHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy6603 206 TVEETYGALKL---KLGQYNEAMKHYESLIERNQENTLYYNKLVEA 248 (724)
Q Consensus 206 ~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 248 (724)
..+..++.+.. ..|..++....+.++++++|.....|..+...
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 76666655433 35778899999999999999888877776554
No 94
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.78 E-value=1.4e-17 Score=147.87 Aligned_cols=172 Identities=12% Similarity=0.190 Sum_probs=157.4
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy6603 61 SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140 (724)
Q Consensus 61 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 140 (724)
....+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCC
Q psy6603 141 HLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQ 220 (724)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 220 (724)
...|++++|+..++++.+.. |. ...++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN---PI----NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHhcC---cH----hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC
Confidence 99999999999998877764 33 567888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCcH
Q psy6603 221 YNEAMKHYESLIERNQENT 239 (724)
Q Consensus 221 ~~~A~~~~~~~~~~~p~~~ 239 (724)
+++|...++++++..|++.
T Consensus 160 ~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 160 HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHcCCCch
Confidence 9999999999999888764
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=2.9e-18 Score=139.47 Aligned_cols=118 Identities=10% Similarity=0.084 Sum_probs=114.2
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 102 (724)
-+|+.++++..+|..+++.|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+..|+++++++|+++.+++.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 140 (724)
|.++..+|++++|+..|+++++++|+++.++..++.++
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999888763
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.78 E-value=1e-17 Score=150.74 Aligned_cols=175 Identities=13% Similarity=0.058 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHccCc
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVT----------------KGRIYKHAGDVLEAYKWLDEAQSLDT 420 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~a~~~~~ 420 (724)
.++..|..+...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++++|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 44578888999999999999999999999999999999 99999999999999999999999999
Q ss_pred cchhhhhhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhh
Q psy6603 421 ADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHK 500 (724)
Q Consensus 421 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 500 (724)
++..++..+|.++...|++++|+..|+++++.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------------------------------------ 117 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQL------------------------------------------------ 117 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------------------------------------
Confidence 99988888888888888888888888888763
Q ss_pred chHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCC--hHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHH
Q psy6603 501 QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGR--KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKC 578 (724)
Q Consensus 501 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 578 (724)
+|.++.+++.+|.++...|+ .+.+...+++++...| ...+++.+|.++...|++++|+.+
T Consensus 118 -----------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~ 179 (208)
T 3urz_A 118 -----------------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNS 179 (208)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred -----------------CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHH
Confidence 34555677778877766554 4456667777654332 223677788888888889999999
Q ss_pred HHHHhhhccccHHHHHHHHH
Q psy6603 579 YRNALKWEHDNIQIMRDLSL 598 (724)
Q Consensus 579 ~~~al~~~p~~~~~~~~l~~ 598 (724)
|+++++++|++. +...+..
T Consensus 180 ~~~al~l~P~~~-~~~~l~~ 198 (208)
T 3urz_A 180 LQKVILRFPSTE-AQKTLDK 198 (208)
T ss_dssp HHHHTTTSCCHH-HHHHHHH
T ss_pred HHHHHHhCCCHH-HHHHHHH
Confidence 999998888753 3334443
No 97
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.75 E-value=4.2e-16 Score=146.43 Aligned_cols=226 Identities=9% Similarity=0.003 Sum_probs=198.0
Q ss_pred hccCCHH-HHHHHHHHHHHcCCCchhHHHHHHHHHhhcCC----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy6603 39 NCLGRKE-EAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKK----------YDEAIKCYRNALKWEHDNIQIMRDLSLLQI 107 (724)
Q Consensus 39 ~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 107 (724)
...|.+. +|+.++.+++..+|++..+|+..+.++...|. +++++.++..++..+|.+..+|...+.++.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 4567666 79999999999999999999999999988776 789999999999999999999999999999
Q ss_pred Hhcc--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc
Q psy6603 108 QMRD--LEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHD-FDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS 184 (724)
Q Consensus 108 ~~~~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 184 (724)
..+. +++++.++.++++.+|.+..+|...+.+....|. +++++..++++++.. |. +..+|..++.++...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~---p~----N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FS----NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---SC----CHHHHHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC---CC----CHHHHHHHHHHHHHh
Confidence 9994 8999999999999999999999999999999999 689998888877654 54 777999999998887
Q ss_pred --------------CCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHc-----------CChHHHHHHHHHHHHHcCCcH
Q psy6603 185 --------------GDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKL-----------GQYNEAMKHYESLIERNQENT 239 (724)
Q Consensus 185 --------------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~ 239 (724)
+.++++++++.+++..+|++..+|+.+..++... +.+++++..+.++++..|++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 5689999999999999999999998776666655 458899999999999999996
Q ss_pred HHHHHHHHHh----ccCChHHHHHHHHHHHHhCCCC
Q psy6603 240 LYYNKLVEAK----QLTNNDDIFQLLTHYISKYPKA 271 (724)
Q Consensus 240 ~~~~~l~~~~----~~~~~~~a~~~~~~~~~~~~~~ 271 (724)
-.+..++.+. ..+..++....+.++++.+|..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 6555554432 2477889999999999999875
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.75 E-value=6.6e-17 Score=147.77 Aligned_cols=190 Identities=11% Similarity=0.028 Sum_probs=152.0
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchh---HHH
Q psy6603 61 SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRA---SWI 134 (724)
Q Consensus 61 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~ 134 (724)
++..++.+|..+...|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45678899999999999999999999999998876 478999999999999999999999999999999875 788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHH------
Q psy6603 135 GFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVE------ 208 (724)
Q Consensus 135 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~------ 208 (724)
.+|.++...|.. + ...+..++..+...|++++|+..|+++++..|+++.+.
T Consensus 83 ~~g~~~~~~~~~--~---------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l 139 (225)
T 2yhc_A 83 MRGLTNMALDDS--A---------------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL 139 (225)
T ss_dssp HHHHHHHHHHC-------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred HHHHHHHhhhhh--h---------------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 899988775421 0 01122334455556677777777777777777665433
Q ss_pred -----------HHHHHHHHHcCChHHHHHHHHHHHHHcCCcH---HHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCc
Q psy6603 209 -----------ETYGALKLKLGQYNEAMKHYESLIERNQENT---LYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATV 273 (724)
Q Consensus 209 -----------~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (724)
..+|.++...|++++|+..|+++++..|+++ .++..++.+ ...|++++|+..++.+....|++..
T Consensus 140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 5789999999999999999999999999986 578888888 6789999999999999999988754
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.74 E-value=4.1e-17 Score=156.00 Aligned_cols=229 Identities=10% Similarity=0.045 Sum_probs=182.4
Q ss_pred hccCCHHHHHHHHHHHHHc--------CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh--------CCCcHHHHHHH
Q psy6603 39 NCLGRKEEAYEYVRRGLRN--------DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW--------EHDNIQIMRDL 102 (724)
Q Consensus 39 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l 102 (724)
...|++++|+..|+++++. .|....++..+|.++...|++++|+..|++++.. .|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888888863 3667788999999999999999999999999987 35567799999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHh--------CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccC-CCCChhhHHH
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFML--------RPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVT-NSYDFEHSEL 173 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~~~ 173 (724)
|.++...|++++|+..+++++.. +|....++..+|.++...|++++|+..++++.+..... +...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999988 57778899999999999999999999999988874322 1123457889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhhcc---------HhhHHHHHHHHHHHcCChHHH------HHHHHHHHHHcCCc
Q psy6603 174 LLYQSMVIQDSGDLEEAVKHLDRFKEQIHD---------KLTVEETYGALKLKLGQYNEA------MKHYESLIERNQEN 238 (724)
Q Consensus 174 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~---------~~~~~~~la~~~~~~g~~~~A------~~~~~~~~~~~p~~ 238 (724)
+..+|.++...|++++|+..+++++...|. ....+..++......+....+ ...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 999999999999999999999999987443 345677777776665554333 33333333334666
Q ss_pred HHHHHHHHHH-hccCChHHHHHHHHHHHHh
Q psy6603 239 TLYYNKLVEA-KQLTNNDDIFQLLTHYISK 267 (724)
Q Consensus 239 ~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~ 267 (724)
..++..++.+ ...|++++|+..++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7788889988 5689999999999998865
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.73 E-value=2.8e-17 Score=143.66 Aligned_cols=169 Identities=12% Similarity=-0.032 Sum_probs=145.0
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 104 (724)
|...+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+| ++.....++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 445568899999999999999999999999999999999999999999999999999999999999999 8877666665
Q ss_pred HHH-HhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH
Q psy6603 105 LQI-QMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD 183 (724)
Q Consensus 105 ~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 183 (724)
+.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.. |+ +....++..+|.++..
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~--~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN---LG--AQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TT--TTTTHHHHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---cc--cChHHHHHHHHHHHHH
Confidence 533 34455678999999999999999999999999999999999999988876554 43 1234588888999999
Q ss_pred cCCHHHHHHHHHHHhh
Q psy6603 184 SGDLEEAVKHLDRFKE 199 (724)
Q Consensus 184 ~g~~~~A~~~~~~~~~ 199 (724)
.|+.++|+..|++++.
T Consensus 157 ~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 157 LGQGNAIASKYRRQLY 172 (176)
T ss_dssp HCSSCHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHH
Confidence 9999999999988765
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=1.4e-17 Score=139.07 Aligned_cols=115 Identities=12% Similarity=0.053 Sum_probs=103.2
Q ss_pred HHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCC
Q psy6603 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 93 (724)
Q Consensus 14 ~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p 93 (724)
.+++++. .+|+++++++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|
T Consensus 24 ~l~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 24 TLKDINA--IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp CTGGGCC--SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CHHHHhC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 3455666 67888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCch
Q psy6603 94 DNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQR 130 (724)
Q Consensus 94 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 130 (724)
+++.+++.+|.++..+|++++|+..|++++++.|+.+
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999998765
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.72 E-value=1.8e-16 Score=152.57 Aligned_cols=227 Identities=9% Similarity=0.045 Sum_probs=179.5
Q ss_pred cccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHH
Q psy6603 4 EHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNC-LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAI 82 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 82 (724)
..|++++|..+++++.+ ..+.. ++. .+++++|...|.++ |.++...|++++|+
T Consensus 3 ~~~~~~eA~~~~~~a~k--~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEK--YLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHH--HHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHH--Hcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHH
Confidence 56899999999998877 32321 222 58899999998876 56788899999999
Q ss_pred HHHHHHHhhCCCc------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHcCCHHHHH
Q psy6603 83 KCYRNALKWEHDN------IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT------QRASWIGFAMAYHLLHDFDMAC 150 (724)
Q Consensus 83 ~~~~~a~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~ 150 (724)
.+|.+++.+.+.. ..++..+|.++...|++++|+..|++++++.+. ...++..+|.+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 9999999885432 458889999999999999999999999988543 24678899999998 9999999
Q ss_pred HHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH------hhHHHHHHHHHHHcCChHHH
Q psy6603 151 NILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK------LTVEETYGALKLKLGQYNEA 224 (724)
Q Consensus 151 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A 224 (724)
..|++++...+.... ......++..+|.++...|++++|+..|++++...|.+ ..++..+|.++...|++++|
T Consensus 136 ~~~~~Al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEER-LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCC-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999887754322 22346788999999999999999999999999987654 34788889999999999999
Q ss_pred HHHHHHHHHHcCCcHH-----HHHHHHHHhccCChHHHHH
Q psy6603 225 MKHYESLIERNQENTL-----YYNKLVEAKQLTNNDDIFQ 259 (724)
Q Consensus 225 ~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~~~~~a~~ 259 (724)
+..|++++ .+|.... ....++..+..++.+....
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAYDEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999 9886542 2334444455566544433
No 103
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.72 E-value=9.4e-16 Score=144.48 Aligned_cols=232 Identities=10% Similarity=0.028 Sum_probs=183.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCccchhhhhhHHHHHHHc-C
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAG-DVLEAYKWLDEAQSLDTADRYINSKCAKYMLRA-N 437 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-g 437 (724)
.+..+....+..++|+.++++++..+|++..+|+.++.++...| .+++++..+++++..+|++..++...+.++... +
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 33444455667789999999999999999999999999999999 599999999999999999999998888888877 6
Q ss_pred -CHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCC
Q psy6603 438 -LIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNP 516 (724)
Q Consensus 438 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 516 (724)
+++++++.+.++++
T Consensus 139 ~~~~~EL~~~~k~L~----------------------------------------------------------------- 153 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLL----------------------------------------------------------------- 153 (349)
T ss_dssp SCCHHHHHHHHHHTS-----------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 77778877777765
Q ss_pred CCCchhHHHHhhhhHhhhcCChH--------HHHHHHHHhhhcCCCccchHHHHHHHHhcccc-------HHHHHHHHHH
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKE--------EAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKK-------YDEAIKCYRN 581 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~ 581 (724)
.+|.+..+|..++.++...|.++ ++++.++++++.+|.|..+|+..+.++...++ ++++++++.+
T Consensus 154 ~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~ 233 (349)
T 3q7a_A 154 PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILK 233 (349)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 34455557777777777777666 89999999999999999999999999999886 7999999999
Q ss_pred HhhhccccHHHHHHHHHHHHHhhhH--------------------hhHHHHHHHHHhhh-----hhhhhhhhhhHHHHHH
Q psy6603 582 ALKWEHDNIQIMRDLSLLQIQMRDL--------------------EGYREGVSAMENLN-----EMQCMWFQTECALAYQ 636 (724)
Q Consensus 582 al~~~p~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~~~~~~~~~~la~~~~ 636 (724)
++..+|+|..++..+..++...|.- ....+....+.... .....+...-++.+|.
T Consensus 234 aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 313 (349)
T 3q7a_A 234 SIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFI 313 (349)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHH
Confidence 9999999999999998888887764 11111111121111 0123333366889999
Q ss_pred HhCChhHHHHHHHHHHHHHh
Q psy6603 637 RLGRWGDTLKKCHEVDRHFS 656 (724)
Q Consensus 637 ~~g~~~~A~~~~~~~~~~~~ 656 (724)
..|+.++|++.|+.+.+++.
T Consensus 314 ~~~~~~~a~~~~~~l~~~~d 333 (349)
T 3q7a_A 314 EQNRVDDAAKVFEKLSSEYD 333 (349)
T ss_dssp HTTCHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHHhhhC
Confidence 99999999999998876643
No 104
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.72 E-value=5.3e-17 Score=147.62 Aligned_cols=212 Identities=8% Similarity=-0.000 Sum_probs=181.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHH-------HHHHhhcCCHHHHHHHHHHHHhhCCCcH-----
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVY-------GLLQRSDKKYDEAIKCYRNALKWEHDNI----- 96 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~a~~~~p~~~----- 96 (724)
..++..|..+ ..+++..|.+.|.+++..+|+...+|..+ +.++...++..+++..+++.+.+.|...
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 4556667766 68999999999999999999999999999 8999999999999999999999877643
Q ss_pred ----------------HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 97 ----------------QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 97 ----------------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
++...++.++...|++++|.+.|..++...|++. +.+.+|.++.+.++|++|+..|+....
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~-- 163 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK-- 163 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG--
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc--
Confidence 3455588999999999999999999999999988 999999999999999999998864322
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh--cc-HhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q psy6603 161 QVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI--HD-KLTVEETYGALKLKLGQYNEAMKHYESLIERNQE 237 (724)
Q Consensus 161 ~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 237 (724)
. |. ......+++.+|.++...|++++|+..|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+
T Consensus 164 -~-~d-~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 164 -W-PD-KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp -C-SC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred -c-CC-cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 1 11 11124689999999999999999999999998544 55 6779999999999999999999999999999999
Q ss_pred cHHHHHHHHHH
Q psy6603 238 NTLYYNKLVEA 248 (724)
Q Consensus 238 ~~~~~~~l~~~ 248 (724)
..+...|...
T Consensus 241 -~~~~~aL~~~ 250 (282)
T 4f3v_A 241 -PKVAAALKDP 250 (282)
T ss_dssp -HHHHHHHHCT
T ss_pred -HHHHHHHhCC
Confidence 7776666543
No 105
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.71 E-value=1.6e-15 Score=142.92 Aligned_cols=233 Identities=13% Similarity=0.027 Sum_probs=198.1
Q ss_pred chhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhc-C-CHHHHHH
Q psy6603 7 QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLG-RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD-K-KYDEAIK 83 (724)
Q Consensus 7 ~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~-g-~~~~A~~ 83 (724)
..++|+..+++++. .+|.+..+|...+.++...| .+++++..+++++..+|++..+|+..+.++... + ++++++.
T Consensus 69 ~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44689999999999 78899999999999999999 599999999999999999999999999999988 8 9999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhcchH--------HHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC-------HHH
Q psy6603 84 CYRNALKWEHDNIQIMRDLSLLQIQMRDLE--------GYRETRYQLFMLRPTQRASWIGFAMAYHLLHD-------FDM 148 (724)
Q Consensus 84 ~~~~a~~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-------~~~ 148 (724)
++.++++.+|.|..+|...+.+....|.++ ++++.+.++++.+|.+..+|..++.++...++ +++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 999999999999999999999999999988 99999999999999999999999999999987 688
Q ss_pred HHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHhhhh------c
Q psy6603 149 ACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL--------------------EEAVKHLDRFKEQI------H 202 (724)
Q Consensus 149 A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~--------------------~~A~~~~~~~~~~~------p 202 (724)
+++.+++++... |+ +..+|.++..++...|.. ..-.+.....+... +
T Consensus 227 ELe~~~~aI~~~---P~----n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 227 ELIYILKSIHLI---PH----NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHC---TT----CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHhC---CC----CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 888877766655 54 677998888888887754 33333333333332 4
Q ss_pred cHhhHHHHHHHHHHHcCChHHHHHHHHHHH-HHcCCcHHHHHHHHHH
Q psy6603 203 DKLTVEETYGALKLKLGQYNEAMKHYESLI-ERNQENTLYYNKLVEA 248 (724)
Q Consensus 203 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~ 248 (724)
.++.++..++.+|...|+.++|.+.++.+. +.+|-...+|...+..
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 567799999999999999999999999987 5588777777665543
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.71 E-value=5.2e-16 Score=147.33 Aligned_cols=169 Identities=9% Similarity=-0.048 Sum_probs=115.9
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 104 (724)
|.+.+.++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 46667777777777777777777777777777777777777777777777777777777777777777766656666666
Q ss_pred HHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc
Q psy6603 105 LQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS 184 (724)
Q Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 184 (724)
.+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.++++.. |+ .....++..++.++...
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~---p~--~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD---LT--AADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT--GGGGHHHHHHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---cc--cccchHHHHHHHHHHHc
Confidence 66677777777777777777777777777777777777776666666666555443 22 11244555555555555
Q ss_pred CCHHHHHHHHHHHh
Q psy6603 185 GDLEEAVKHLDRFK 198 (724)
Q Consensus 185 g~~~~A~~~~~~~~ 198 (724)
|+.++|+..|++++
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 55555555555554
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.70 E-value=1.4e-16 Score=139.18 Aligned_cols=168 Identities=12% Similarity=-0.050 Sum_probs=124.8
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHH
Q psy6603 58 DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFA 137 (724)
Q Consensus 58 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la 137 (724)
+|.....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4555667888999999999999999999999999999999999999999999999999999999999999 776655555
Q ss_pred HHHH-HcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH--hhHHHHHHHH
Q psy6603 138 MAYH-LLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK--LTVEETYGAL 214 (724)
Q Consensus 138 ~~~~-~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~la~~ 214 (724)
.+.. ..+...+|+..++++++.. |+ +..+++.+|.++...|++++|+..|+++++.+|+. +.++..++.+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~---P~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~ 153 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAAN---PD----NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI 153 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHS---TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence 4422 2223334566665555443 43 55677777777777777777777777777777664 4477777777
Q ss_pred HHHcCChHHHHHHHHHHHH
Q psy6603 215 KLKLGQYNEAMKHYESLIE 233 (724)
Q Consensus 215 ~~~~g~~~~A~~~~~~~~~ 233 (724)
+...|+.++|+..|++++.
T Consensus 154 ~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 154 LSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHCSSCHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHH
Confidence 7777777777777777664
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.70 E-value=2.8e-15 Score=144.17 Aligned_cols=172 Identities=14% Similarity=0.097 Sum_probs=116.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHH
Q psy6603 40 CLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETR 119 (724)
Q Consensus 40 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 119 (724)
..|++++|.++++++.+..+... +...+++++|+..|.++ +.++...|++++|+..|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~---------~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF---------MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS---------SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccc---------cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 46788899999999888766421 11158899999998876 55788889999999999
Q ss_pred HHHHHhCCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q psy6603 120 YQLFMLRPTQ------RASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKH 193 (724)
Q Consensus 120 ~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 193 (724)
.+++++.+.. ..++..+|.++...|++++|+..|++++.......+ ......++..+|.++.. |++++|+..
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 9888876432 346667777777777777777777776665432221 11234566666767666 777777777
Q ss_pred HHHHhhhhccH------hhHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q psy6603 194 LDRFKEQIHDK------LTVEETYGALKLKLGQYNEAMKHYESLIERNQ 236 (724)
Q Consensus 194 ~~~~~~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 236 (724)
|++++...|.. ..++..+|.++..+|++++|+..|++++...|
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 77776665532 34566666666666666666666666666543
No 109
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.69 E-value=6.9e-16 Score=140.30 Aligned_cols=206 Identities=11% Similarity=0.033 Sum_probs=166.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHccCccchhhh-----
Q psy6603 359 HYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTK-------GRIYKHAGDVLEAYKWLDEAQSLDTADRYIN----- 426 (724)
Q Consensus 359 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----- 426 (724)
+..|..+ ..+++..|...|.+++..+|+.+++|..+ +.++...++..+++..+.+.+.+.|......
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 3555555 58999999999999999999999999999 8999999999999999999999988753333
Q ss_pred ----------------hhHHHHHHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhh
Q psy6603 427 ----------------SKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCH 490 (724)
Q Consensus 427 ----------------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 490 (724)
..++.++...|++++|.+.|..++...|... ..+.+|.++.+.+++++|+..|.
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~----------~~~~~a~l~~~~~r~~dA~~~l~ 159 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL----------VAWMKAVVYGAAERWTDVIDQVK 159 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH----------HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH----------HHHHHHHHHHHcCCHHHHHHHHH
Confidence 3378889999999999999999887554321 22447888888888888888766
Q ss_pred hhhhHhhhhhchHHHHHHHHHHhcCCCCCc-hhHHHHhhhhHhhhcCChHHHHHHHHHhhhcC--CC-ccchHHHHHHHH
Q psy6603 491 EVDRKCYEHKQYKNGLKFAKQILTNPKYAE-HGETLAMKGLTLNCLGRKEEAYEYVRRGLRND--LK-SHVCWHVYGLLQ 566 (724)
Q Consensus 491 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~ 566 (724)
.. + .. .+|. ...+++++|.++..+|++++|+..|++++... |. .+.+++.+|.++
T Consensus 160 ~a-------------------~-~~-~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL 218 (282)
T 4f3v_A 160 SA-------------------G-KW-PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMAR 218 (282)
T ss_dssp TG-------------------G-GC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHH
T ss_pred Hh-------------------h-cc-CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 44 1 11 1111 23589999999999999999999999998643 55 556899999999
Q ss_pred hccccHHHHHHHHHHHhhhccccHHHHHHHH
Q psy6603 567 RSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 597 (724)
Q Consensus 567 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 597 (724)
..+|+.++|...|++++..+|+ ..+...|.
T Consensus 219 ~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 219 RSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 9999999999999999999998 77776664
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.69 E-value=4.6e-16 Score=126.38 Aligned_cols=121 Identities=12% Similarity=0.033 Sum_probs=109.4
Q ss_pred HHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhH
Q psy6603 53 RGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRAS 132 (724)
Q Consensus 53 ~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 132 (724)
++..++|+....+..+|..++..|+|++|+..|+++++++|.++.++..+|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q psy6603 133 WIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMV 180 (724)
Q Consensus 133 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 180 (724)
|+.+|.++...|++++|+..|+++++.. |+ +..++..++.+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~---P~----~~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVD---PS----NEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT----CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC---cC----CHHHHHHHHHh
Confidence 9999999999999999999999987765 44 55566666554
No 111
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.69 E-value=4e-17 Score=136.37 Aligned_cols=112 Identities=10% Similarity=-0.042 Sum_probs=107.5
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Q psy6603 49 EYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128 (724)
Q Consensus 49 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 128 (724)
..+++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.+|..+|.++...|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 129 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
++.+++.+|.++...|++++|+..|+++++..
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999988776
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.68 E-value=2.3e-16 Score=132.58 Aligned_cols=121 Identities=12% Similarity=-0.027 Sum_probs=107.3
Q ss_pred HHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q psy6603 12 LKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW 91 (724)
Q Consensus 12 ~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~ 91 (724)
-..+++++. .+|.+..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.+
T Consensus 7 ~~~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345777888 678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHH
Q psy6603 92 EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWI 134 (724)
Q Consensus 92 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 134 (724)
+|+++.+++.+|.++...|++++|+..|+++++..|+++....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 9999999999999999999999999999999999888776543
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.68 E-value=1.4e-15 Score=144.38 Aligned_cols=167 Identities=12% Similarity=0.053 Sum_probs=82.2
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy6603 59 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAM 138 (724)
Q Consensus 59 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 138 (724)
|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555544444444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH--hhHHHHHHHHHH
Q psy6603 139 AYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK--LTVEETYGALKL 216 (724)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~ 216 (724)
.+...++.++|+..++++.... |+ +..+++.+|.++...|++++|+..|.++++.+|++ ..++..++.++.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~---P~----~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN---PE----DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcC---Cc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 4444444444444444433322 22 33444444444444455555555555444444444 444444444444
Q ss_pred HcCChHHHHHHHHHHH
Q psy6603 217 KLGQYNEAMKHYESLI 232 (724)
Q Consensus 217 ~~g~~~~A~~~~~~~~ 232 (724)
..|+.++|...|++++
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 4444444444444443
No 114
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.68 E-value=2.7e-16 Score=148.64 Aligned_cols=197 Identities=15% Similarity=0.107 Sum_probs=146.9
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 104 (724)
|.++..+..+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc
Q psy6603 105 LQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS 184 (724)
Q Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 184 (724)
++...|++++|+..|+++++++|+++..+...+...... .++......... ..|. ...+...++..+ .
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~----~~~i~~~l~~l~--~ 148 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKRWNSIEER---RIHQ----ESELHSYLTRLI--A 148 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHHHHHHHHT---CCCC----CCHHHHHHHHHH--H
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHHHHHHHHH---HHhh----hHHHHHHHHHHH--H
Confidence 999999999999999999999987643222222211111 111111111111 1122 223334444433 6
Q ss_pred CCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q psy6603 185 GDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKL-GQYNEAMKHYESLIE 233 (724)
Q Consensus 185 g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~ 233 (724)
|++++|++.++++++.+|++......++.++... +.+++|...|.++.+
T Consensus 149 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 149 AERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7888888888888888888777777777666665 567777777776654
No 115
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.67 E-value=5.4e-16 Score=129.83 Aligned_cols=124 Identities=16% Similarity=0.082 Sum_probs=110.8
Q ss_pred HHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhC
Q psy6603 13 KFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE 92 (724)
Q Consensus 13 ~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 92 (724)
..|++++. .+|.+...++.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++
T Consensus 5 ~~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46777777 7788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy6603 93 HDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAM 138 (724)
Q Consensus 93 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 138 (724)
|+++.+++.+|.++...|++++|+..|+++++.+|+++........
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 9999999999999999999999999999999999988776554443
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=2e-15 Score=159.44 Aligned_cols=156 Identities=12% Similarity=-0.030 Sum_probs=133.1
Q ss_pred ccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHH
Q psy6603 5 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKC 84 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 84 (724)
.|++++|+..++++++ .+|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5899999999999999 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhc
Q psy6603 85 YRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLL---HDFDMACNILEAFRKTQQ 161 (724)
Q Consensus 85 ~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~ 161 (724)
|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++... |++++|+..++++.+..+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999877764
Q ss_pred c
Q psy6603 162 V 162 (724)
Q Consensus 162 ~ 162 (724)
.
T Consensus 160 ~ 160 (568)
T 2vsy_A 160 G 160 (568)
T ss_dssp C
T ss_pred c
Confidence 3
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=1.7e-15 Score=159.82 Aligned_cols=165 Identities=7% Similarity=-0.056 Sum_probs=109.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHH
Q psy6603 41 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRY 120 (724)
Q Consensus 41 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 120 (724)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q psy6603 121 QLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS---GDLEEAVKHLDRF 197 (724)
Q Consensus 121 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---g~~~~A~~~~~~~ 197 (724)
++++.+|+++.++..+|.++...|++++|+..++++.+.. |+ ...++..+|.++... |++++|+..++++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---PE----EPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8888888887777777777777777777777666655543 32 345666666666666 6666666666666
Q ss_pred hhhhccHhhHHHHHH
Q psy6603 198 KEQIHDKLTVEETYG 212 (724)
Q Consensus 198 ~~~~p~~~~~~~~la 212 (724)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 666666655554444
No 118
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.5e-15 Score=121.45 Aligned_cols=118 Identities=11% Similarity=-0.002 Sum_probs=111.5
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~ 104 (724)
|..+..+..+|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHHHHHhC------CCchhHHHHHHHHHHH
Q psy6603 105 LQIQMRDLEGYRETRYQLFMLR------PTQRASWIGFAMAYHL 142 (724)
Q Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~ 142 (724)
++...|++++|+..|+++++.+ |.+..++..++.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999 8888888888776543
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=5.1e-16 Score=150.84 Aligned_cols=154 Identities=11% Similarity=0.070 Sum_probs=141.2
Q ss_pred cccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCc---------------hhHHHHH
Q psy6603 4 EHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS---------------HVCWHVY 68 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~l 68 (724)
..+++++|+..++..+. ..|.++.++..+|.+++..|++++|+..|++++..+|++ ..+|..+
T Consensus 125 ~L~~~~~A~~~~~~a~~--~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSE--EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEEECCCCGGGCCHH--HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHH--HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 34678888888888777 567888999999999999999999999999999999998 5889999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHH
Q psy6603 69 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDM 148 (724)
Q Consensus 69 g~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 148 (724)
|.++...|++++|+.+|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...|++++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHh
Q psy6603 149 AC-NILEAFRKT 159 (724)
Q Consensus 149 A~-~~~~~~~~~ 159 (724)
|. ..+..+...
T Consensus 283 a~~~~~~~~~~~ 294 (336)
T 1p5q_A 283 REKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 94 455554443
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.63 E-value=3.2e-15 Score=125.55 Aligned_cols=118 Identities=8% Similarity=-0.122 Sum_probs=112.3
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC
Q psy6603 48 YEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRP 127 (724)
Q Consensus 48 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 127 (724)
-..|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCC
Q psy6603 128 TQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNS 165 (724)
Q Consensus 128 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 165 (724)
+++.+++.+|.++...|++++|+..|+++++..+.+|.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 99999999999999999999999999999888865554
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=2.6e-14 Score=128.72 Aligned_cols=176 Identities=11% Similarity=-0.005 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc----chHHHHHHHHHH
Q psy6603 47 AYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMR----DLEGYRETRYQL 122 (724)
Q Consensus 47 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~~ 122 (724)
|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+..|+++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 34444444432 33444444444444444444444444444432 344444444444444 3 444444444444
Q ss_pred HHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHH
Q psy6603 123 FMLRPTQRASWIGFAMAYHL----LHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD----SGDLEEAVKHL 194 (724)
Q Consensus 123 l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~ 194 (724)
.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+.. |. ...+.+++.+|.+|.. .+++++|+.+|
T Consensus 80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~--~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS---ES--DAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST---TS--HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC---CC--cchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 32 3344445555555544 455555555544433222 10 0124556666666666 56677777777
Q ss_pred HHHhhhhccHhhHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHHc
Q psy6603 195 DRFKEQIHDKLTVEETYGALKLKL-G-----QYNEAMKHYESLIERN 235 (724)
Q Consensus 195 ~~~~~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~~~~~~ 235 (724)
+++.+. |.++.+++.+|.+|... | ++++|+..|+++.+..
T Consensus 153 ~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777665 55566677777777653 2 6777777777776653
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=3e-14 Score=128.34 Aligned_cols=178 Identities=10% Similarity=-0.013 Sum_probs=156.7
Q ss_pred hhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcC----CHHHHHHH
Q psy6603 9 KNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK----KYDEAIKC 84 (724)
Q Consensus 9 ~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~ 84 (724)
++|+..|+++.+ . .++.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+
T Consensus 3 ~eA~~~~~~aa~--~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAE--A--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHH--T--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHH--C--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 467888888877 2 57789999999999999999999999999874 678999999999998 7 99999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHH----hcchHHHHHHHHHHHHhCC--CchhHHHHHHHHHHH----cCCHHHHHHHHH
Q psy6603 85 YRNALKWEHDNIQIMRDLSLLQIQ----MRDLEGYRETRYQLFMLRP--TQRASWIGFAMAYHL----LHDFDMACNILE 154 (724)
Q Consensus 85 ~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~~~ 154 (724)
|+++.+ +.++.+++.||.+|.. .+++++|+..|+++++..| .++.+++.+|.+|.. .+++++|+.+|+
T Consensus 76 ~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 76 AEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999965 6899999999999987 8899999999999999998 468999999999999 899999999999
Q ss_pred HHHHhhccCCCCChhhHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhhhhcc
Q psy6603 155 AFRKTQQVTNSYDFEHSELLLYQSMVIQDS-G-----DLEEAVKHLDRFKEQIHD 203 (724)
Q Consensus 155 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-g-----~~~~A~~~~~~~~~~~p~ 203 (724)
++.+.. . .+.+++.+|.+|... | ++++|+.+|+++.+....
T Consensus 154 ~A~~~~-~-------~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSLS-R-------TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHTS-C-------TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcC-C-------CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 987651 1 345889999999874 3 899999999999987543
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-14 Score=119.38 Aligned_cols=124 Identities=10% Similarity=0.028 Sum_probs=119.1
Q ss_pred CCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q psy6603 22 PKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 101 (724)
Q Consensus 22 p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 101 (724)
+..|.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|.++.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCC
Q psy6603 102 LSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHD 145 (724)
Q Consensus 102 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 145 (724)
+|.++...|++++|+..++++++.+|.+..++..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988764
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.61 E-value=4.9e-15 Score=129.80 Aligned_cols=130 Identities=9% Similarity=0.020 Sum_probs=98.1
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHH-HhhcCCH--
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLL-QRSDKKY-- 78 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~-~~~~g~~-- 78 (724)
++..|++++|+..+++++. .+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4566778888888888777 5667777888888888888888888888888888888877778888877 6677777
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHH
Q psy6603 79 DEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133 (724)
Q Consensus 79 ~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 133 (724)
++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888888888888888888888888888888888888888888887765443
No 125
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.61 E-value=3.6e-14 Score=118.04 Aligned_cols=132 Identities=23% Similarity=0.301 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 108 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 108 (724)
.+++.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 109 MRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 109 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
.|++++|+..+++++...|.++.++..+|.++...|++++|...++++....
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999998876654
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.60 E-value=3.1e-16 Score=152.30 Aligned_cols=184 Identities=13% Similarity=0.147 Sum_probs=115.3
Q ss_pred cchhhHHHHHHH----hhCCCCCCChHHHHHHHHHHHh------------ccCCHHHHHHHHHHHHHcCCCchhHHHHHH
Q psy6603 6 KQYKNGLKFAKQ----ILTNPKYAEHGETLAMKGLTLN------------CLGRKEEAYEYVRRGLRNDLKSHVCWHVYG 69 (724)
Q Consensus 6 ~~~~~A~~~~~~----~l~~p~~p~~~~~~~~~a~~~~------------~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 69 (724)
+.+++|+..++. .+. ..|.. ++...|.... ..+++++|+..+++++..+|+...++..+|
T Consensus 79 ~~~e~al~~~~~Ge~~~l~--i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVY--LKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEE--ECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEE--ECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 456677776666 555 22332 3333443322 456677788888888877888888888888
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHH
Q psy6603 70 LLQRSDKKYDEAIKCYRNALKWEHDN---------------IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWI 134 (724)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 134 (724)
.++...|++++|+..|++++.++|.+ ..++.++|.++...|++++|+..|+++++++|+++.+++
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 234 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 88888888888888888888888877 355556666666666666666666666655555555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHH
Q psy6603 135 GFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGAL 214 (724)
Q Consensus 135 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 214 (724)
.+|. ++...|++++|+..|+++++.+|++..++..++.+
T Consensus 235 ~lg~-----------------------------------------~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 235 RRGE-----------------------------------------AHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHH-----------------------------------------HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHH-----------------------------------------HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 5554 55555555555555555555555555556666666
Q ss_pred HHHcCChHHH-HHHHHHHHHH
Q psy6603 215 KLKLGQYNEA-MKHYESLIER 234 (724)
Q Consensus 215 ~~~~g~~~~A-~~~~~~~~~~ 234 (724)
+...|++++| ...|++++..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555 3345554443
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.60 E-value=1.4e-14 Score=136.77 Aligned_cols=100 Identities=12% Similarity=-0.015 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHc
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRA 436 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 436 (724)
.++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|++..++..+|.++...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcccCc
Q psy6603 437 NLIKEAEETCSKFTREGVSA 456 (724)
Q Consensus 437 g~~~~A~~~~~~~~~~~~~~ 456 (724)
|++++|+..|+++++.+|..
T Consensus 86 g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCccc
Confidence 99999999999999866644
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.59 E-value=1.4e-14 Score=121.21 Aligned_cols=117 Identities=13% Similarity=-0.019 Sum_probs=108.5
Q ss_pred HHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Q psy6603 49 EYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128 (724)
Q Consensus 49 ~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 128 (724)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCC
Q psy6603 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNS 165 (724)
Q Consensus 129 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~ 165 (724)
++.+++.+|.++...|++++|+..|+++++..+.+|.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999999999888765554
No 129
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.59 E-value=2.1e-14 Score=123.68 Aligned_cols=119 Identities=10% Similarity=0.025 Sum_probs=112.0
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 102 (724)
..+.++..++.+|.+++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYH 141 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 141 (724)
|.++...|++++|+..|+++++++|++..++...+....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999997777665433
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.59 E-value=5.2e-14 Score=121.91 Aligned_cols=134 Identities=10% Similarity=0.075 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 106 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 106 (724)
.+..+..+|.+++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|.++.++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHHHHhCCCchhHHHHH--HHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 107 IQMRDLEGYRETRYQLFMLRPTQRASWIGF--AMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 107 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
...|++++|+..++++++.+|.+..++..+ +..+...|++++|+..+.......
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999999999999999999999888554 445888999999999988876554
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=2.3e-13 Score=130.02 Aligned_cols=178 Identities=13% Similarity=0.007 Sum_probs=149.5
Q ss_pred CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCc--
Q psy6603 58 DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI------QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQ-- 129 (724)
Q Consensus 58 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-- 129 (724)
+|.....+...+..+...|++++|+..+.++++..|... ..++.+|.++...|++++|+..++++++..+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 355556677788999999999999999999999877654 346678888999999999999999999876543
Q ss_pred ----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc--
Q psy6603 130 ----RASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHD-- 203 (724)
Q Consensus 130 ----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-- 203 (724)
..++..+|.+|...|++++|+..++++.+.....|+.......++..+|.++...|++++|+..+++++...+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 45889999999999999999999999997765555532233478999999999999999999999999988754
Q ss_pred ----HhhHHHHHHHHHHHcCChHHH-HHHHHHHHHHc
Q psy6603 204 ----KLTVEETYGALKLKLGQYNEA-MKHYESLIERN 235 (724)
Q Consensus 204 ----~~~~~~~la~~~~~~g~~~~A-~~~~~~~~~~~ 235 (724)
...++..+|.++..+|++++| ...|++++...
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 267899999999999999999 77899988763
No 132
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.57 E-value=3.6e-13 Score=124.18 Aligned_cols=249 Identities=14% Similarity=0.055 Sum_probs=184.2
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
.|-.|+|..++.-..++-. ..+. ...+.+.+++..+|++.... ...| ...+...++..+. ++ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~--~~~~--~~~~~~~Rs~iAlg~~~~~~-------~~~~-~~~a~~~la~~~~--~~---a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK--VTDN--TLLFYKAKTLLALGQYQSQD-------PTSK-LGKVLDLYVQFLD--TK---N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC--CCCH--HHHHHHHHHHHHTTCCCCCC-------SSST-THHHHHHHHHHHT--TT---C
T ss_pred HHHhhHHHHHHHHHHhcCc--cchH--HHHHHHHHHHHHcCCCccCC-------CCCH-HHHHHHHHHHHhc--cc---H
Confidence 3567999999986554322 3332 46677777888888877421 1111 1223334444442 32 8
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRP--TQRASWIGFAMAYHLLHDFDMACNILEAFRKT 159 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 159 (724)
+..|++.+...+.+..++..+|.++...|++++|+..+.+.+..+| ++.+++...+.++...|+.+.|.+.++++.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999887667777788999999999999999999999999997 88999999999999999999999999988766
Q ss_pred hccCCCCChhhHHHHHHHH--HHHHHcC--CHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHH-
Q psy6603 160 QQVTNSYDFEHSELLLYQS--MVIQDSG--DLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIER- 234 (724)
Q Consensus 160 ~~~~p~~~~~~~~~~~~~~--~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 234 (724)
. |+.......++..++ .+....| ++.+|...|+++....|+.......+. ++..+|++++|...++.+++.
T Consensus 166 ~---~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 I---EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp S---CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHH
T ss_pred C---ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhc
Confidence 5 200000123444444 3455556 999999999999988887322222233 899999999999999988776
Q ss_pred ---------cCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCc
Q psy6603 235 ---------NQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATV 273 (724)
Q Consensus 235 ---------~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (724)
+|+++.++.+++.+ +..|+ +|.+++.++....|+.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 58899999777766 56676 889999999999999854
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.57 E-value=4e-14 Score=123.92 Aligned_cols=127 Identities=13% Similarity=0.195 Sum_probs=115.8
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHhcch--HH
Q psy6603 38 LNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL-QIQMRDL--EG 114 (724)
Q Consensus 38 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~~~~--~~ 114 (724)
+...|++++|+..+++++..+|+++.+|..+|.++...|++++|+..|++++..+|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCC
Q psy6603 115 YRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 115 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p 164 (724)
|+..++++++.+|+++.++..+|.++...|++++|+..++++.+..+.++
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999999887765443
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.57 E-value=3.4e-14 Score=117.34 Aligned_cols=124 Identities=11% Similarity=0.054 Sum_probs=118.9
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 102 (724)
..|.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCH
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDF 146 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 146 (724)
|.++...|++++|+..++++++.+|+++.++..++.++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988875
No 135
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.57 E-value=7.6e-15 Score=119.55 Aligned_cols=108 Identities=11% Similarity=0.059 Sum_probs=94.8
Q ss_pred chhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHH
Q psy6603 520 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 599 (724)
Q Consensus 520 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 599 (724)
+.+.++..+|.++.+.|++++|+..|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|++...+..++.+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999887766666655
Q ss_pred HHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHH
Q psy6603 600 QIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHF 655 (724)
Q Consensus 600 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 655 (724)
+.. +|.++...|++++|++.|+++++..
T Consensus 86 ~~~----------------------------lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 86 MSR----------------------------AGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHH----------------------------HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHH----------------------------HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 444 4448889999999999999888753
No 136
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.56 E-value=1.4e-14 Score=118.29 Aligned_cols=110 Identities=14% Similarity=0.091 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-------chh-----HHHHHHHHHhhcCCHHHHHHHHHHHHhh---
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK-------SHV-----CWHVYGLLQRSDKKYDEAIKCYRNALKW--- 91 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~a~~~--- 91 (724)
.+..+..+|..++..|++++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3567889999999999999999999999999999 333 8999999999999999999999999999
Q ss_pred ----CCCcHHHH----HHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHH
Q psy6603 92 ----EHDNIQIM----RDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGF 136 (724)
Q Consensus 92 ----~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 136 (724)
+|++..+| +++|.++..+|++++|+..|+++++++|++......+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999 9999999999999999999999999998876554433
No 137
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.56 E-value=2.3e-13 Score=113.12 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy6603 63 VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL 142 (724)
Q Consensus 63 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 142 (724)
.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35667777777777888888888777777777777777777777777777777777777777777766666666666666
Q ss_pred cCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc
Q psy6603 143 LHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIH 202 (724)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 202 (724)
.|++++|+..++++.+.. |. ...++..+|.++...|++++|+..+++++..+|
T Consensus 82 ~~~~~~A~~~~~~~~~~~---~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD---PR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhC---CC----ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 666666666555544432 21 233444455555555555555555555544444
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=7.8e-15 Score=131.08 Aligned_cols=143 Identities=14% Similarity=0.114 Sum_probs=125.2
Q ss_pred cchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch----------------hHHHHHH
Q psy6603 6 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH----------------VCWHVYG 69 (724)
Q Consensus 6 ~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----------------~~~~~lg 69 (724)
|+|++|.+.++.... ..+..+..+..+|..++..|++++|+..|++++...|.++ .++..+|
T Consensus 18 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ----CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 556666665554444 3345678899999999999999999999999999999887 8899999
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy6603 70 LLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMA 149 (724)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 149 (724)
.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..++.++...++..++
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred H
Q psy6603 150 C 150 (724)
Q Consensus 150 ~ 150 (724)
.
T Consensus 176 ~ 176 (198)
T 2fbn_A 176 D 176 (198)
T ss_dssp -
T ss_pred H
Confidence 6
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=4.5e-14 Score=113.72 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 108 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~ 108 (724)
..++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHHHhCCCchh
Q psy6603 109 MRDLEGYRETRYQLFMLRPTQRA 131 (724)
Q Consensus 109 ~~~~~~A~~~~~~~l~~~p~~~~ 131 (724)
.|++++|+..++++++.+|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999997653
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.55 E-value=5.5e-13 Score=127.35 Aligned_cols=173 Identities=10% Similarity=-0.029 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch------hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc------
Q psy6603 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH------VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN------ 95 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~------ 95 (724)
...+...+..+...|++++|+..+.++++..|... ..++.+|.++...|++++|+..|++++...+..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556788899999999999999999999877644 235678999999999999999999999875543
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHH---HhCCCch----hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCCh
Q psy6603 96 IQIMRDLSLLQIQMRDLEGYRETRYQLF---MLRPTQR----ASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDF 168 (724)
Q Consensus 96 ~~~~~~la~~~~~~~~~~~A~~~~~~~l---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 168 (724)
..++..+|.+|...|++++|+..|++++ +..|++. .++.++|.+|...|++++|+..++++++.... .+...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~-~~~~~ 233 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-INSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTBCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCcHH
Confidence 5689999999999999999999999999 5556532 68999999999999999999999999887633 22233
Q ss_pred hhHHHHHHHHHHHHHcCCHHHH-HHHHHHHhhhh
Q psy6603 169 EHSELLLYQSMVIQDSGDLEEA-VKHLDRFKEQI 201 (724)
Q Consensus 169 ~~~~~~~~~~~~~~~~g~~~~A-~~~~~~~~~~~ 201 (724)
....+++.+|.++...|++++| ...+++++...
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4578999999999999999999 78899988654
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.54 E-value=5.4e-14 Score=114.46 Aligned_cols=103 Identities=11% Similarity=-0.015 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc-------HHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN-------IQI 98 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~ 98 (724)
+.+.++..+|..++..|++++|+..|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|++ ..+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 4567788899999999999999999999999999999999999999999999999999999999988765 347
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Q psy6603 99 MRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128 (724)
Q Consensus 99 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 128 (724)
+..+|.++...|++++|+..|++++...|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 888899999999999999999999988875
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.54 E-value=1.1e-13 Score=119.73 Aligned_cols=139 Identities=6% Similarity=0.015 Sum_probs=126.1
Q ss_pred hhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHH
Q psy6603 521 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 600 (724)
Q Consensus 521 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 600 (724)
.+..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhhh
Q psy6603 601 IQMRDLEGYREGVSAMENLNEMQ-CMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEII 659 (724)
Q Consensus 601 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 659 (724)
...|++++|.+.++.+....|.. ..+....++..+...|++++|++.+.++...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 151 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccc
Confidence 99999999999999999887765 556556666678899999999999998887765443
No 143
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.54 E-value=1.3e-13 Score=125.01 Aligned_cols=131 Identities=11% Similarity=0.027 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 106 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 106 (724)
....++.+|.++...|++++|+..|++++ +| ++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34567888999999999999999999885 33 5778899999999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHHHHhCCCch----------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 107 IQMRDLEGYRETRYQLFMLRPTQR----------------ASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 107 ~~~~~~~~A~~~~~~~l~~~p~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
...|++++|+..|+++++..|.+. .++..+|.++...|++++|+..++++.+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999999887766 677777777777777777777766655443
No 144
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.54 E-value=2.6e-11 Score=123.54 Aligned_cols=210 Identities=10% Similarity=0.017 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHhh
Q psy6603 371 TMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFT 450 (724)
Q Consensus 371 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 450 (724)
.+.....|++++...|..+..|+..+..+...|+.++|...|++++.. |.+..++...+.. .+.++. ++.+.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~----~e~~~~---~~~l~ 266 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV----MDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH----TTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh----cchhHH---HHHHH
Confidence 345678899999999999999999999999999999999999999999 8887665543332 111111 22211
Q ss_pred hcc---c---CccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHH
Q psy6603 451 REG---V---SAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGET 524 (724)
Q Consensus 451 ~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 524 (724)
... . ...........+|.. .+....+.+ ..+.|..+|+.. ..|. ....+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~--y~~~~~r~~--------------------~~~~AR~i~~~A-~~~~--~~~~v 321 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRIN--HLNYVLKKR--------------------GLELFRKLFIEL-GNEG--VGPHV 321 (493)
T ss_dssp HHTC----------CHHHHHHHHHH--HHHHHHHHH--------------------CHHHHHHHHHHH-TTSC--CCHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHH--HHHHHHHcC--------------------CHHHHHHHHHHh-hCCC--CChHH
Confidence 100 0 000001111122222 122222222 233344444333 2221 12334
Q ss_pred HHhhhhHhhhcC-ChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHh
Q psy6603 525 LAMKGLTLNCLG-RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 603 (724)
Q Consensus 525 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 603 (724)
|...+.+....+ +.+.|..+|+.+++..|+++..|...+......|+.+.|...|+++ +....++......-...
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~ 397 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMV 397 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHC
Confidence 444454444444 4666666666666666666665555666666666666666666665 23455555555555556
Q ss_pred hhHhhHHHHHHHHH
Q psy6603 604 RDLEGYREGVSAME 617 (724)
Q Consensus 604 ~~~~~a~~~~~~~~ 617 (724)
|+.+.+.+.++...
T Consensus 398 G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 398 GSMELFRELVDQKM 411 (493)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666555544
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.54 E-value=4.6e-13 Score=127.90 Aligned_cols=171 Identities=13% Similarity=-0.002 Sum_probs=143.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH------HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCc------hhH
Q psy6603 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ------IMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQ------RAS 132 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~ 132 (724)
+...+..+...|++++|+..+++++...+..+. .+..+|.++...|++++|+..+++++...+.. ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 334477788899999999999999998776655 33458888888889999999999999865442 236
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH------hh
Q psy6603 133 WIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK------LT 206 (724)
Q Consensus 133 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~ 206 (724)
+..+|.+|...|++++|+..++++++.....|........++..+|.++...|++++|+..++++++..+.. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 899999999999999999999999887665545455677799999999999999999999999999887554 67
Q ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHHHHc
Q psy6603 207 VEETYGALKLKLGQ-YNEAMKHYESLIERN 235 (724)
Q Consensus 207 ~~~~la~~~~~~g~-~~~A~~~~~~~~~~~ 235 (724)
++..+|.++..+|+ +++|+..|++++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 89999999999995 699999999998763
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.53 E-value=1.2e-13 Score=115.04 Aligned_cols=119 Identities=14% Similarity=0.086 Sum_probs=107.7
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 102 (724)
..|.++..++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCC-----chhHHHHHHHHHH
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLRPT-----QRASWIGFAMAYH 141 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~ 141 (724)
|.++...|++++|+..|+++++.+|+ +..++..+..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 5566655555443
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1.6e-13 Score=141.92 Aligned_cols=175 Identities=10% Similarity=0.089 Sum_probs=157.4
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHccCccchhhhhhHHHHHHHcC-
Q psy6603 369 GDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGD----------VLEAYKWLDEAQSLDTADRYINSKCAKYMLRAN- 437 (724)
Q Consensus 369 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g- 437 (724)
...++|+..+++++..+|++..+|+.++.++...|+ +++++..++++++.+|++..++...+.++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 345788999999999999999999999999999998 999999999999999999999988888888888
Q ss_pred -CHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCC
Q psy6603 438 -LIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNP 516 (724)
Q Consensus 438 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 516 (724)
+++++++.+.++++
T Consensus 123 ~~~~~el~~~~k~l~----------------------------------------------------------------- 137 (567)
T 1dce_A 123 PNWARELELCARFLE----------------------------------------------------------------- 137 (567)
T ss_dssp CCHHHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHh-----------------------------------------------------------------
Confidence 56888887777765
Q ss_pred CCCchhHHHHhhhhHhhhcC-ChHHHHHHHHHhhhcCCCccchHHHHHHHHhcc--------------ccHHHHHHHHHH
Q psy6603 517 KYAEHGETLAMKGLTLNCLG-RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD--------------KKYDEAIKCYRN 581 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~ 581 (724)
.+|.+..+|..++.++...| .+++++++++++++.+|.+..+|+.+|.++... +.+++|++++.+
T Consensus 138 ~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 217 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHH
Confidence 33456669999999999999 899999999999999999999999999998874 789999999999
Q ss_pred HhhhccccHHHHHHHHHHHHHhhhHhh
Q psy6603 582 ALKWEHDNIQIMRDLSLLQIQMRDLEG 608 (724)
Q Consensus 582 al~~~p~~~~~~~~l~~~~~~~~~~~~ 608 (724)
++..+|++..+|+.++.++...+..+.
T Consensus 218 ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 218 AFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 999999999999999999988887554
No 148
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.53 E-value=1.1e-14 Score=147.73 Aligned_cols=145 Identities=12% Similarity=0.103 Sum_probs=132.0
Q ss_pred ccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCc---------------hhHHHHHH
Q psy6603 5 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS---------------HVCWHVYG 69 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~lg 69 (724)
.++|++|+..++..+. ..|..+..+..+|.+++..|++++|+..|+++++.+|.+ ..+|..+|
T Consensus 247 l~~~~~A~~~~~~~~~--~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTK--EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEECCCCGGGSCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 4677788888877776 567888999999999999999999999999999999998 58899999
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Q psy6603 70 LLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMA 149 (724)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 149 (724)
.++..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...+++++|
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HH
Q psy6603 150 CN 151 (724)
Q Consensus 150 ~~ 151 (724)
..
T Consensus 405 ~~ 406 (457)
T 1kt0_A 405 DR 406 (457)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 149
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.53 E-value=2e-13 Score=123.84 Aligned_cols=125 Identities=19% Similarity=0.233 Sum_probs=116.8
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
++..|+|++|+..|++++. .++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|
T Consensus 16 ~~~~~~~~~A~~~~~~a~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp HHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHH
Confidence 3567999999999999974 25689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcH----------------HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchh
Q psy6603 82 IKCYRNALKWEHDNI----------------QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRA 131 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 131 (724)
+..|+++++..|.+. .+++.+|.++...|++++|+..|+++++.+|++..
T Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 999999999888766 89999999999999999999999999999998744
No 150
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.52 E-value=6.6e-11 Score=120.51 Aligned_cols=353 Identities=10% Similarity=0.017 Sum_probs=180.4
Q ss_pred c-chhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCC-HHHHHH
Q psy6603 6 K-QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKK-YDEAIK 83 (724)
Q Consensus 6 ~-~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~-~~~A~~ 83 (724)
| +...|...|+.++. ..|. |+++.+..+|++++...| +...|..........++ .+....
T Consensus 8 ~~~i~~aR~vyer~l~--~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 8 GVELSSPSAIMEHARR--LYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ----CCHHHHHHHHHH--HHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred CcchHHHHHHHHHHHH--HCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 5 37778888888777 4443 889999999999999888 67788888777776663 455677
Q ss_pred HHHHHHhh---CCCcHHHHHHHHHHHH----HhcchHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHcCCHHHHHHHHHH
Q psy6603 84 CYRNALKW---EHDNIQIMRDLSLLQI----QMRDLEGYRETRYQLFMLRPTQRA-SWIGFAMAYHLLHDFDMACNILEA 155 (724)
Q Consensus 84 ~~~~a~~~---~p~~~~~~~~la~~~~----~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~ 155 (724)
.|+.++.. +|.+..+|...+..+. ..++.+.+..+|++++..-+.+.. .|...... ........+..++..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHH
Confidence 88888874 6778888888887654 457888999999999985322222 22222111 111111112111111
Q ss_pred HHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc-HhhHHHHHHHHHHHc--CC-----hHHHHHH
Q psy6603 156 FRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHD-KLTVEETYGALKLKL--GQ-----YNEAMKH 227 (724)
Q Consensus 156 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~--g~-----~~~A~~~ 227 (724)
..+.+..|...++.+....+. +...|......-... |- .+.....
T Consensus 149 ---------------------------~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 149 ---------------------------TLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred ---------------------------HhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 111233333333333332221 122333322222111 00 2334556
Q ss_pred HHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHHhCCCCCccccccccccCchhHHHHHHHHHHhhhhcCCchh
Q psy6603 228 YESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPL 306 (724)
Q Consensus 228 ~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (724)
|++++...|..+..|...+.. ...|+.+.|..+|++++.. |.+.........+.
T Consensus 202 ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~------------------------ 256 (493)
T 2uy1_A 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM------------------------ 256 (493)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT------------------------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc------------------------
Confidence 666666666666666666655 3456666666666666666 55432100000000
Q ss_pred hhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy6603 307 FVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTP 386 (724)
Q Consensus 307 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 386 (724)
..+. ....+...+. ....... .....+....+| ...+....+.++.+.|..+|+++ ...+
T Consensus 257 ---------e~~~--~~~~l~~~~~----~~~~~~~--~~~~~~~~~~lw--~~y~~~~~r~~~~~~AR~i~~~A-~~~~ 316 (493)
T 2uy1_A 257 ---------DEEA--VYGDLKRKYS----MGEAESA--EKVFSKELDLLR--INHLNYVLKKRGLELFRKLFIEL-GNEG 316 (493)
T ss_dssp ---------TCTH--HHHHHHHHTC----------------CHHHHHHHH--HHHHHHHHHHHCHHHHHHHHHHH-TTSC
T ss_pred ---------chhH--HHHHHHHHHH----hhccchh--hhhcccccHHHH--HHHHHHHHHcCCHHHHHHHHHHh-hCCC
Confidence 0000 0000000000 0000000 000011112223 23445555566677777777777 3222
Q ss_pred ChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHHHHHHHHHHh
Q psy6603 387 TLIELFVTKGRIYKHAG-DVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKF 449 (724)
Q Consensus 387 ~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 449 (724)
.....|...+.+....+ +.+.|..+|+.+++..|+++..+...+......|+.+.|..+|+++
T Consensus 317 ~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 317 VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 24455555555555444 4777777777777766666555555555555566666666665554
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.52 E-value=4.4e-13 Score=109.48 Aligned_cols=118 Identities=22% Similarity=0.242 Sum_probs=113.0
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 106 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~ 106 (724)
.+.+++.+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..|++++...|.++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC
Q psy6603 107 IQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLH 144 (724)
Q Consensus 107 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 144 (724)
...|++++|+..++++++.+|.++.++..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999887654
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=3.3e-13 Score=110.21 Aligned_cols=102 Identities=13% Similarity=0.099 Sum_probs=97.5
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHH
Q psy6603 59 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAM 138 (724)
Q Consensus 59 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 138 (724)
|..+..+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhh
Q psy6603 139 AYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
++...|++++|+..++++.+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999987766
No 153
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.51 E-value=9.2e-13 Score=121.51 Aligned_cols=188 Identities=12% Similarity=0.051 Sum_probs=143.9
Q ss_pred HHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CchhHHHHHHHHHhhcCCHHHHHHHHHHH
Q psy6603 11 GLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDL--KSHVCWHVYGLLQRSDKKYDEAIKCYRNA 88 (724)
Q Consensus 11 A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 88 (724)
|+..+++++. ..+.+..++..+|.++...|++++|++++.+.+..+| .+..++..++.++..+|+.+.|.+.++++
T Consensus 85 a~~~l~~l~~--~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLK--DKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTT--TSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6778888887 3345566778999999999999999999999999887 88899999999999999999999999999
Q ss_pred HhhCCC----cHHHHHHH--HHHHHHhc--chHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 89 LKWEHD----NIQIMRDL--SLLQIQMR--DLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 89 ~~~~p~----~~~~~~~l--a~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
.+.+|+ +-.+...+ +.+.+..| ++.+|..+|+++.+..|+.......+. ++..+|++++|...++.+.+..
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhc
Confidence 999883 23344444 44466667 899999999999888887222222233 8999999999999988765553
Q ss_pred cc-------CCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhH
Q psy6603 161 QV-------TNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTV 207 (724)
Q Consensus 161 ~~-------~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 207 (724)
+. +|+ ++.++.+++.+....|+ +|.++++++....|+++.+
T Consensus 242 p~~~~k~~~~p~----~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 242 YSVEQKENAVLY----KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHTTTCHHHHSS----HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccccCCCC----CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 22 233 56666666666666666 6677777777777776655
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=1.2e-13 Score=118.95 Aligned_cols=119 Identities=10% Similarity=0.012 Sum_probs=107.6
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHH
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 596 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 596 (724)
..+.++.++..+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+.+|+++++++|+++.+++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHH
Q psy6603 597 SLLQIQMRDLEGYREGVSAMENLNEMQ-CMWFQTECALAY 635 (724)
Q Consensus 597 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~ 635 (724)
|.++..+|+++.|.+.++.+....|.. ..|+...+..+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999999999999999999888876 555444443333
No 155
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=2.3e-13 Score=140.71 Aligned_cols=178 Identities=8% Similarity=-0.033 Sum_probs=147.3
Q ss_pred hccCCH-HHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCC----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy6603 39 NCLGRK-EEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKK----------YDEAIKCYRNALKWEHDNIQIMRDLSLLQI 107 (724)
Q Consensus 39 ~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~a~~~~p~~~~~~~~la~~~~ 107 (724)
...|++ ++|++.+++++..+|++..+|+..+.++...|+ +++++..+.++++.+|++..+|...+.++.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344544 578999999999999999999999999999988 999999999999999999999999999999
Q ss_pred Hhc--chHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc
Q psy6603 108 QMR--DLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLH-DFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS 184 (724)
Q Consensus 108 ~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 184 (724)
..+ +++++++.+.++++.+|.+..+|...+.+....| .++++++.++++ +..+|. +..+|..++.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~---I~~~p~----n~saW~~r~~ll~~l 191 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL---ITRNFS----NYSSWHYRSCLLPQL 191 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT---TTTTCC----CHHHHHHHHHHHHHH
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHH---HHHCCC----CccHHHHHHHHHHhh
Confidence 999 6699999999999999999999999999999999 899998777664 444555 777888888888775
Q ss_pred --------------CCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHH
Q psy6603 185 --------------GDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNE 223 (724)
Q Consensus 185 --------------g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~ 223 (724)
+.++++++.+.+++..+|++..+|+.++.++...+++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 345666666666666666666666666666666665444
No 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.51 E-value=1.3e-13 Score=118.38 Aligned_cols=118 Identities=19% Similarity=0.081 Sum_probs=108.2
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------------------CCCchhHHHHHHHHHhhcCCHHHHHHHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN------------------DLKSHVCWHVYGLLQRSDKKYDEAIKCYRN 87 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 87 (724)
..+..+..+|..++..|++++|+..|.+++.. +|.+..+|..+|.++...|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 35678999999999999999999999999998 777788999999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHc
Q psy6603 88 ALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQR-ASWIGFAMAYHLL 143 (724)
Q Consensus 88 a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~ 143 (724)
++.++|+++.+++.+|.++...|++++|+..|+++++++|+++ .+...++.+....
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 5666666655443
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.51 E-value=4.9e-13 Score=107.89 Aligned_cols=115 Identities=13% Similarity=0.057 Sum_probs=109.7
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 105 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 105 (724)
+.+..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy6603 106 QIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140 (724)
Q Consensus 106 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 140 (724)
+...|++++|...++++++.+|+++.++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999998887764
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.50 E-value=3e-13 Score=121.60 Aligned_cols=161 Identities=16% Similarity=0.216 Sum_probs=132.6
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHH------cCCCchhHHHHHHHHHhhc
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR------NDLKSHVCWHVYGLLQRSD 75 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~lg~~~~~~ 75 (724)
++..|+|++|.+.++.+..+| +..+.++..+|.++...|++++|+..+++++. ..|....++..+|.++...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 467899999999777666633 47789999999999999999999999999998 4556677799999999999
Q ss_pred CCHHHHHHHHHHHHhh---CCCc----HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC------chhHHHHHHHHHHH
Q psy6603 76 KKYDEAIKCYRNALKW---EHDN----IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT------QRASWIGFAMAYHL 142 (724)
Q Consensus 76 g~~~~A~~~~~~a~~~---~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~ 142 (724)
|++++|+..|++++.. .+++ ..++..+|.++...|++++|+..+++++...+. ...++..+|.++..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999999988 4433 457899999999999999999999999976432 12456889999999
Q ss_pred cCCHHHHHHHHHHHHHhhccCC
Q psy6603 143 LHDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~~p 164 (724)
.|++++|+..++++.+.....+
T Consensus 160 ~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999887764433
No 159
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.50 E-value=1.1e-12 Score=125.34 Aligned_cols=171 Identities=11% Similarity=-0.010 Sum_probs=141.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchh------HHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc------HH
Q psy6603 30 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV------CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN------IQ 97 (724)
Q Consensus 30 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~------~~ 97 (724)
.+...+..+...|++++|...+++++...+..+. .+..+|.++...|++++|+..|++++...+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3445578889999999999999999987776554 23358999999999999999999999865432 34
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC-------CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhh
Q psy6603 98 IMRDLSLLQIQMRDLEGYRETRYQLFMLR-------PTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEH 170 (724)
Q Consensus 98 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 170 (724)
++..+|.+|...|++++|+..|+++++.. |....++.++|.+|...|++++|+..++++++..+...+ ....
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~-~~~~ 235 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-MALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-CTTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc-HHHH
Confidence 78999999999999999999999999522 234468899999999999999999999999887644322 3346
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHhhhh
Q psy6603 171 SELLLYQSMVIQDSG-DLEEAVKHLDRFKEQI 201 (724)
Q Consensus 171 ~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~ 201 (724)
+.++..+|.++...| .+++|+..|++++...
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 789999999999999 5799999999998764
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8.5e-13 Score=111.59 Aligned_cols=120 Identities=15% Similarity=0.031 Sum_probs=113.0
Q ss_pred CCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCc---hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHH
Q psy6603 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS---HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIM 99 (724)
Q Consensus 23 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 99 (724)
..|.+...++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..|++++..+|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 456788999999999999999999999999999999998 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy6603 100 RDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL 142 (724)
Q Consensus 100 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 142 (724)
+.+|.++...|++++|+..|+++++.+|++..++..++.+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998888776543
No 161
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.49 E-value=5.6e-13 Score=110.28 Aligned_cols=122 Identities=10% Similarity=-0.029 Sum_probs=112.0
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHH
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 596 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 596 (724)
..|.++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|+++.++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHHHHhCC
Q psy6603 597 SLLQIQMRDLEGYREGVSAMENLNEMQ-CMWFQTECALAYQRLGR 640 (724)
Q Consensus 597 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~ 640 (724)
|.++...|+++.|.+.++.+....|.. ..+ ..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAA--DGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHH--HHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHH--HHHHHHHHHhcC
Confidence 999999999999999999998887765 555 567778877764
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.48 E-value=8.1e-13 Score=108.57 Aligned_cols=115 Identities=12% Similarity=-0.016 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch---hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHHHH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH---VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMRDL 102 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~l 102 (724)
++++.+|.+++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4678899999999999999999999999999988 789999999999999999999999999999999 8899999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy6603 103 SLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLL 143 (724)
Q Consensus 103 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 143 (724)
|.++...|++++|+..|+++++..|+++.+......+....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~ 123 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIR 123 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999888766665544433
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.47 E-value=2.4e-13 Score=111.03 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=88.6
Q ss_pred hHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCC-------ccc-----hHHHHHHHHhccccHHHHHHHHHHHhhh----
Q psy6603 522 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK-------SHV-----CWHVYGLLQRSDKKYDEAIKCYRNALKW---- 585 (724)
Q Consensus 522 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~---- 585 (724)
+..+..+|..+...|++++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 457899999999999999999999999999999 333 9999999999999999999999999999
Q ss_pred ---ccccHHHH----HHHHHHHHHhhhHhhHHHHHHHHHhhhhhh
Q psy6603 586 ---EHDNIQIM----RDLSLLQIQMRDLEGYREGVSAMENLNEMQ 623 (724)
Q Consensus 586 ---~p~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 623 (724)
+|++..+| +++|.++..+|++++|++.|+.+....|.+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999 888887777777777777777766666655
No 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.47 E-value=1.6e-12 Score=116.78 Aligned_cols=160 Identities=13% Similarity=0.042 Sum_probs=82.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHhcch
Q psy6603 39 NCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW------EHDNIQIMRDLSLLQIQMRDL 112 (724)
Q Consensus 39 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~------~p~~~~~~~~la~~~~~~~~~ 112 (724)
+..|++++|...++......+....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677777777554443322355666777777777777777777777777763 233344566666666666666
Q ss_pred HHHHHHHHHHHHh---CC----CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcC
Q psy6603 113 EGYRETRYQLFML---RP----TQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSG 185 (724)
Q Consensus 113 ~~A~~~~~~~l~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g 185 (724)
++|+..++++++. .+ ....++..+|.++...|++++|+..++++.......++ ......++..+|.++...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-QVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHCc
Confidence 6666666666555 22 12234455555555555555555555554443322111 1112223334444444444
Q ss_pred CHHHHHHHHHHHhh
Q psy6603 186 DLEEAVKHLDRFKE 199 (724)
Q Consensus 186 ~~~~A~~~~~~~~~ 199 (724)
++++|+..+++++.
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.47 E-value=8.9e-14 Score=124.16 Aligned_cols=126 Identities=11% Similarity=-0.020 Sum_probs=74.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcH---------------
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI--------------- 96 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~--------------- 96 (724)
...+......|++++|.+.+.......+.....+..+|..+...|++++|+..|++++...|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 33455566677777777777766666666777788888888888888888888888888877765
Q ss_pred -HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6603 97 -QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFR 157 (724)
Q Consensus 97 -~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 157 (724)
.++..+|.++...|++++|+..++++++.+|.++.+++.+|.++...|++++|+..|++++
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555554444444444444433
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.46 E-value=4e-13 Score=108.11 Aligned_cols=100 Identities=17% Similarity=0.155 Sum_probs=90.9
Q ss_pred HHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Q psy6603 523 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 602 (724)
Q Consensus 523 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 602 (724)
..++.+|.++.+.|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhHhhHHHHHHHHHhhhhh
Q psy6603 603 MRDLEGYREGVSAMENLNEM 622 (724)
Q Consensus 603 ~~~~~~a~~~~~~~~~~~~~ 622 (724)
.|++++|+..++.+....|.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 88888888888887776664
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.44 E-value=6.1e-13 Score=106.14 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC--cHHHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD--NIQIMRDL 102 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l 102 (724)
|.++.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|. +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 5566777888888888888888888888888888888888888888888888888888888888888888 88888888
Q ss_pred HHHHHHh-cchHHHHHHHHHHHHhCCCch
Q psy6603 103 SLLQIQM-RDLEGYRETRYQLFMLRPTQR 130 (724)
Q Consensus 103 a~~~~~~-~~~~~A~~~~~~~l~~~p~~~ 130 (724)
|.++... |++++|++.+++++...|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888888 888888888888888777653
No 168
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.42 E-value=2.8e-12 Score=105.65 Aligned_cols=125 Identities=10% Similarity=0.074 Sum_probs=113.7
Q ss_pred HcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHH
Q psy6603 56 RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIG 135 (724)
Q Consensus 56 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 135 (724)
..+|.+...+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|.++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCH
Q psy6603 136 FAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL 187 (724)
Q Consensus 136 la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~ 187 (724)
+|.++...|++++|+..++++.+.. |+ ...++..++.++...|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELD---PD----NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TT----CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC---cc----chHHHHHHHHHHHHHhcC
Confidence 9999999999999999999987765 43 556788888888888764
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.42 E-value=4.8e-12 Score=105.20 Aligned_cols=107 Identities=15% Similarity=0.068 Sum_probs=100.6
Q ss_pred HcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHH
Q psy6603 56 RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIG 135 (724)
Q Consensus 56 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 135 (724)
..+|.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcc
Q psy6603 136 FAMAYHLLHDFDMACNILEAFRKTQQV 162 (724)
Q Consensus 136 la~~~~~~g~~~~A~~~~~~~~~~~~~ 162 (724)
+|.++...|++++|+..++++.+..+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999998887754
No 170
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.42 E-value=5.9e-13 Score=108.41 Aligned_cols=94 Identities=10% Similarity=0.006 Sum_probs=81.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCH----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q psy6603 40 CLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKY----------DEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 109 (724)
Q Consensus 40 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~ 109 (724)
+.+.+++|+..++++++.+|+++.+|..+|.++...+++ ++|+..|+++++++|++..+++.+|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 456788899999999999999999999898888888765 5999999999999999999999999999887
Q ss_pred c-----------chHHHHHHHHHHHHhCCCchhHH
Q psy6603 110 R-----------DLEGYRETRYQLFMLRPTQRASW 133 (724)
Q Consensus 110 ~-----------~~~~A~~~~~~~l~~~p~~~~~~ 133 (724)
| ++++|+.+|+++++++|++...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 5 89999999999999999876443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.41 E-value=1.4e-12 Score=107.54 Aligned_cols=116 Identities=6% Similarity=-0.060 Sum_probs=105.9
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc-------HHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN-------IQI 98 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~-------~~~ 98 (724)
..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999998876 889
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy6603 99 MRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL 142 (724)
Q Consensus 99 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 142 (724)
+..+|.++...|++++|+..|+++++..| ++..+..++.+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 57777777766543
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.40 E-value=3.4e-13 Score=136.94 Aligned_cols=147 Identities=16% Similarity=0.169 Sum_probs=132.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---------------HHHHHHHHH
Q psy6603 40 CLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---------------IQIMRDLSL 104 (724)
Q Consensus 40 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---------------~~~~~~la~ 104 (724)
..+++++|+..++.++...|+....+..+|.++...|++++|+..|++++.++|.+ ..++.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45577789999999999999999999999999999999999999999999999998 689999999
Q ss_pred HHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHc
Q psy6603 105 LQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS 184 (724)
Q Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 184 (724)
++..+|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++.. |+ +..++..++.++...
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---P~----~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQ----NKAARLQISMCQKKA 398 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877654 43 556888999999999
Q ss_pred CCHHHHHHH
Q psy6603 185 GDLEEAVKH 193 (724)
Q Consensus 185 g~~~~A~~~ 193 (724)
+++++|...
T Consensus 399 ~~~~~a~~~ 407 (457)
T 1kt0_A 399 KEHNERDRR 407 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877653
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.39 E-value=5.8e-13 Score=106.85 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHc---CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHH
Q psy6603 42 GRKEEAYEYVRRGLRN---DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRET 118 (724)
Q Consensus 42 g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 118 (724)
|++++|+..|+++++. +|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444455555555544 3444444555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhCCCchh
Q psy6603 119 RYQLFMLRPTQRA 131 (724)
Q Consensus 119 ~~~~l~~~p~~~~ 131 (724)
+++++...|+++.
T Consensus 84 ~~~al~~~p~~~~ 96 (117)
T 3k9i_A 84 LLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHhCCCcHH
Confidence 5555555554443
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.39 E-value=1.6e-12 Score=111.53 Aligned_cols=104 Identities=19% Similarity=0.104 Sum_probs=84.2
Q ss_pred hhHHHHhhhhHhhhcCChHHHHHHHHHhhhc------------------CCCccchHHHHHHHHhccccHHHHHHHHHHH
Q psy6603 521 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRN------------------DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNA 582 (724)
Q Consensus 521 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 582 (724)
.+..+...|..+.+.|++++|+..|++++.. +|.+..++.++|.++..+|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4557788888888888888888888888887 6666678888888888888888888888888
Q ss_pred hhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhh
Q psy6603 583 LKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQC 624 (724)
Q Consensus 583 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 624 (724)
++++|+++.+++.+|.++..+|+++.|...++.+....|...
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 888888888888888888888888888888888877777664
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.39 E-value=2.2e-13 Score=138.75 Aligned_cols=129 Identities=10% Similarity=0.084 Sum_probs=118.3
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 105 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 105 (724)
..+.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++++|+++.+++.+|.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHH--HHHcCCHHHHHHHHH
Q psy6603 106 QIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMA--YHLLHDFDMACNILE 154 (724)
Q Consensus 106 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~ 154 (724)
+..+|++++|+..|+++++.+|++..++..++.+ +...|++++|+..++
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999988 888999999998877
No 176
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.38 E-value=6.8e-13 Score=108.06 Aligned_cols=91 Identities=19% Similarity=0.108 Sum_probs=84.6
Q ss_pred ccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCH----------HHHHHHHHHHHHcCCCchhHHHHHHHHHhh
Q psy6603 5 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRK----------EEAYEYVRRGLRNDLKSHVCWHVYGLLQRS 74 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 74 (724)
.+.|++|++.++++++ .+|.++++|+.+|.++...+++ ++|+..|+++++++|++..+|+.+|.+|..
T Consensus 15 ~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3689999999999999 7789999999999999999876 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHhhCCCcHH
Q psy6603 75 DK-----------KYDEAIKCYRNALKWEHDNIQ 97 (724)
Q Consensus 75 ~g-----------~~~~A~~~~~~a~~~~p~~~~ 97 (724)
.| ++++|+.+|++|++++|++..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 75 899999999999999999853
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.38 E-value=1.2e-12 Score=104.93 Aligned_cols=102 Identities=11% Similarity=0.127 Sum_probs=88.4
Q ss_pred cccchhhHHHHHHHhhC-CCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHH
Q psy6603 4 EHKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAI 82 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~-~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 82 (724)
..|++++|+..|+++++ .+.+|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46899999999999999 22268889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHH
Q psy6603 83 KCYRNALKWEHDNIQIMRDLSLL 105 (724)
Q Consensus 83 ~~~~~a~~~~p~~~~~~~~la~~ 105 (724)
..|++++...|+++.+......+
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999998765444333
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.38 E-value=4.1e-12 Score=124.43 Aligned_cols=124 Identities=13% Similarity=0.035 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH----------------cCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q psy6603 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLR----------------NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW 91 (724)
Q Consensus 28 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~ 91 (724)
+..+..+|..++..|++++|+..|+++++ .+|.+..+|..+|.++...|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45788999999999999999999999998 78888899999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHH
Q psy6603 92 EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACN 151 (724)
Q Consensus 92 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 151 (724)
+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++++++.+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888764
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.38 E-value=1.1e-11 Score=126.30 Aligned_cols=205 Identities=10% Similarity=0.022 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchh-----------------HHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV-----------------CWHVYGLLQRSDKKYDEAIKCYRNALKW 91 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~a~~~ 91 (724)
.+....|..+...|++++|++.|.++++..|.... ++..+|.+|...|++++|+..+.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 46677888889999999999999999988776543 3667788888888888888888887776
Q ss_pred CCCcH------HHHHHHHHHHHHhcchHHHHHHHHHHHHhCC------CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy6603 92 EHDNI------QIMRDLSLLQIQMRDLEGYRETRYQLFMLRP------TQRASWIGFAMAYHLLHDFDMACNILEAFRKT 159 (724)
Q Consensus 92 ~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 159 (724)
.+... .+...++.++...|+++.|+..+++++...+ ....++..+|.++...|++.+|+..++.+...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 44321 2344566666667777777777777765432 23456677777777777777777777776665
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccH-------hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6603 160 QQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK-------LTVEETYGALKLKLGQYNEAMKHYESLI 232 (724)
Q Consensus 160 ~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 232 (724)
.....+ .+....++..+|.++...|++++|...+++++...+.. ...+..+|.++...|++++|...|.+++
T Consensus 165 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 165 FKKLDD-KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTSSC-STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHhccc-chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 543332 34456677777777777777777777777776654221 2345566667777777777777777776
Q ss_pred HH
Q psy6603 233 ER 234 (724)
Q Consensus 233 ~~ 234 (724)
+.
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.38 E-value=4.3e-12 Score=101.11 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=99.8
Q ss_pred cCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--chhHHH
Q psy6603 57 NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT--QRASWI 134 (724)
Q Consensus 57 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~ 134 (724)
.+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|. +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHhhc
Q psy6603 135 GFAMAYHLL-HDFDMACNILEAFRKTQQ 161 (724)
Q Consensus 135 ~la~~~~~~-g~~~~A~~~~~~~~~~~~ 161 (724)
.+|.++... |++++|+..++++....+
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999999 999999999988776654
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.37 E-value=4.3e-13 Score=136.57 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=114.8
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 81 (724)
++.+|+|++|+..|+++++ .+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++..+|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5678999999999999999 77889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHH--HHHhcchHHHHHHHH-----------HHHHhCCCch
Q psy6603 82 IKCYRNALKWEHDNIQIMRDLSLL--QIQMRDLEGYRETRY-----------QLFMLRPTQR 130 (724)
Q Consensus 82 ~~~~~~a~~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~~l~~~p~~~ 130 (724)
+..|+++++++|++..++..++.+ +...|++++|+..++ +++..+|...
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~ 155 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS 155 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence 999999999999999999999988 889999999999999 7777777643
No 182
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.37 E-value=2.6e-11 Score=98.77 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=107.0
Q ss_pred CCCc-hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHH
Q psy6603 58 DLKS-HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGF 136 (724)
Q Consensus 58 ~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l 136 (724)
+|.. ..+++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4554 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcC
Q psy6603 137 AMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSG 185 (724)
Q Consensus 137 a~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g 185 (724)
|.++...|++++|+..++++.+.. |. ...++..++.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELD---PN----NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TT----CHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC---CC----cHHHHHHHHHHHHhcc
Confidence 999999999999999999887765 43 4567777777776554
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.37 E-value=7.8e-13 Score=128.37 Aligned_cols=135 Identities=15% Similarity=0.086 Sum_probs=94.9
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch-----------------hHHHHHHHHHhhcCCHHHHHHHHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH-----------------VCWHVYGLLQRSDKKYDEAIKCYRNA 88 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~a 88 (724)
..+..+..+|..++..|++++|+..|++++...|++. .+|+.+|.++...|++++|+..|+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999877 38999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHH-HHcCCHHHHHHHHHHHHHhh
Q psy6603 89 LKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY-HLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 89 ~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~ 160 (724)
++++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.+. ...+..+++...|.++....
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999999999999999884 45567777877777765554
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.2e-11 Score=126.16 Aligned_cols=200 Identities=14% Similarity=0.144 Sum_probs=163.9
Q ss_pred cccccchhhHHHHHHHhhC-CCCCCC--------------hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch----
Q psy6603 2 CYEHKQYKNGLKFAKQILT-NPKYAE--------------HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH---- 62 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~-~p~~p~--------------~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---- 62 (724)
++..|+|++|++.|.++++ .|.... ...++..+|.+|...|++++|++.+.+++...+...
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 4578999999999999998 222211 124688999999999999999999999987655433
Q ss_pred --hHHHHHHHHHhhcCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHh------CCC
Q psy6603 63 --VCWHVYGLLQRSDKKYDEAIKCYRNALKWE------HDNIQIMRDLSLLQIQMRDLEGYRETRYQLFML------RPT 128 (724)
Q Consensus 63 --~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~ 128 (724)
.+...+|.++...|++++|+..+++++... +....++..+|.++...|++++|...+++++.. .|.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 235667899999999999999999998763 233668899999999999999999999998875 234
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q psy6603 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI 201 (724)
Q Consensus 129 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 201 (724)
...++..++.++...|++++|...++++.......+.........+...|.++...|++++|...|.+++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999998887765555334456778888999999999999999999988754
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.35 E-value=1e-11 Score=101.85 Aligned_cols=87 Identities=13% Similarity=-0.068 Sum_probs=56.1
Q ss_pred HhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCc---cchHHHHHHHHhccccHHHHHHHHHHHhhhccc
Q psy6603 512 ILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS---HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 588 (724)
Q Consensus 512 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 588 (724)
+...|.++..+.+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|+
T Consensus 29 ~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 29 LELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 44444444444566667777777777777777777777666666 556666777777777777777777777776666
Q ss_pred cHHHHHHHHH
Q psy6603 589 NIQIMRDLSL 598 (724)
Q Consensus 589 ~~~~~~~l~~ 598 (724)
++.+...+..
T Consensus 109 ~~~~~~a~~~ 118 (129)
T 2xev_A 109 SDAARVAQER 118 (129)
T ss_dssp SHHHHHHHHH
T ss_pred ChHHHHHHHH
Confidence 6655554443
No 186
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.32 E-value=7.2e-12 Score=103.17 Aligned_cols=107 Identities=6% Similarity=-0.071 Sum_probs=94.7
Q ss_pred chhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhcccc-------HHH
Q psy6603 520 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN-------IQI 592 (724)
Q Consensus 520 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 592 (724)
..+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|++++...|++ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3456899999999999999999999999999999999999999999999999999999999999999887 888
Q ss_pred HHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhh
Q psy6603 593 MRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMW 626 (724)
Q Consensus 593 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 626 (724)
+..+|.++...|+++.|.+.++.+....|+...+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 115 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL 115 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHH
Confidence 8889988888888888888888887776644433
No 187
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.31 E-value=6.4e-11 Score=95.24 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=101.4
Q ss_pred chhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q psy6603 61 SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140 (724)
Q Consensus 61 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 140 (724)
.+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q psy6603 141 HLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMV 180 (724)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 180 (724)
...|++++|+..++++.+.. |+ ...++..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE---AN----NPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC---TT----CHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcC---CC----CHHHHHHHHHh
Confidence 99999999999988876654 43 44556555554
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.30 E-value=2.9e-12 Score=124.30 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=81.8
Q ss_pred cccccchhhHHHHHHHhhCCCCCCChH-----------------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhH
Q psy6603 2 CYEHKQYKNGLKFAKQILTNPKYAEHG-----------------ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVC 64 (724)
Q Consensus 2 ~~~~~~~~~A~~~~~~~l~~p~~p~~~-----------------~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 64 (724)
++..|+|++|+..|++++. ..|.+. .+++.+|.++...|++++|+..|+++++.+|++..+
T Consensus 189 ~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a 266 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKA 266 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 5788999999999999998 556655 489999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHhcchHHHHHHHHHHHHhCCCchh
Q psy6603 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL-QIQMRDLEGYRETRYQLFMLRPTQRA 131 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~~l~~~p~~~~ 131 (724)
|+.+|.++...|++++|+..|+++++++|++..++..++.+ ....+..+.+...|.+++...|.++.
T Consensus 267 ~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 267 LFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 99999999999999999999999999999999999999998 44667788899999999999998654
No 189
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1e-10 Score=98.65 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=98.8
Q ss_pred cCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHH
Q psy6603 57 NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN---IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133 (724)
Q Consensus 57 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 133 (724)
.+|.+...+..+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|.++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457788889999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 134 IGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 134 ~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
..+|.++...|++++|+..++++.+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999987765
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.26 E-value=4.8e-11 Score=102.61 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCch------hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc-----
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH------VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN----- 95 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~----- 95 (724)
.+.++..+|.++...|++++|+..+++++...+... .++..+|.++...|++++|+..|++++...+..
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 457889999999999999999999999998765543 368899999999999999999999999875432
Q ss_pred -HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 96 -IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT------QRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 96 -~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
..++..+|.++...|++++|+..++++++..+. ...++..+|.++...|++++|+..++++.+..
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 558899999999999999999999999976432 35678899999999999999999999887765
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.26 E-value=1.8e-10 Score=98.94 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=95.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q psy6603 63 VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHL 142 (724)
Q Consensus 63 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 142 (724)
.++..+|.++...|++++|+..|++++...+.... . +....++..+|.++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~--------------~~~~~~~~~l~~~~~~ 61 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--------------K--------------AAERIAYSNLGNAYIF 61 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------------H--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC--------------c--------------hHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666554322110 0 0001355566666666
Q ss_pred cCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc------cHhhHHHHHHHHHH
Q psy6603 143 LHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIH------DKLTVEETYGALKL 216 (724)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~ 216 (724)
.|++++|+..++++....+..++ ......++..+|.++...|++++|+..+++++...+ ....++..+|.++.
T Consensus 62 ~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 62 LGEFETASEYYKKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 66666666666666655533322 223456778888889999999999999988887643 23557888899999
Q ss_pred HcCChHHHHHHHHHHHHHcCC
Q psy6603 217 KLGQYNEAMKHYESLIERNQE 237 (724)
Q Consensus 217 ~~g~~~~A~~~~~~~~~~~p~ 237 (724)
..|++++|+..++++++....
T Consensus 141 ~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHTCHHHHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHHHHH
Confidence 999999999999998887543
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.4e-11 Score=97.90 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=86.7
Q ss_pred hhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhcccc------HHHHH
Q psy6603 521 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN------IQIMR 594 (724)
Q Consensus 521 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 594 (724)
++.++..+|.++...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 456899999999999999999999999999999999999999999999999999999999999999999 88888
Q ss_pred HHHHHHHHhhhHhhHHHHHHH
Q psy6603 595 DLSLLQIQMRDLEGYREGVSA 615 (724)
Q Consensus 595 ~l~~~~~~~~~~~~a~~~~~~ 615 (724)
.++.++...|+++.+.+.++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999888888887776655443
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.20 E-value=6.3e-11 Score=116.03 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=96.1
Q ss_pred hHHHHhhhhHhhhcCChHHHHHHHHHhhh----------------cCCCccchHHHHHHHHhccccHHHHHHHHHHHhhh
Q psy6603 522 GETLAMKGLTLNCLGRKEEAYEYVRRGLR----------------NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW 585 (724)
Q Consensus 522 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 585 (724)
+..+..+|..+...|++++|+..|+++++ .+|.+..++.++|.++..+|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34677888888888888888888888887 66777778888888888888888888888888888
Q ss_pred ccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHHHHhCChhHHHH
Q psy6603 586 EHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ-CMWFQTECALAYQRLGRWGDTLK 646 (724)
Q Consensus 586 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 646 (724)
+|+++.+++.+|.++..+|++++|.+.++.+.+..|.. ..+ ..++.++...++++++.+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~--~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ--AELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888887777655 333 456667777776666654
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.8e-11 Score=97.29 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc------HHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN------IQIMR 100 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~ 100 (724)
++.++..+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 567888889999999999999999999999999888889999999999999999999999999998888 77888
Q ss_pred HHHHHHHHhcchHHHHHHHH
Q psy6603 101 DLSLLQIQMRDLEGYRETRY 120 (724)
Q Consensus 101 ~la~~~~~~~~~~~A~~~~~ 120 (724)
.+|.++...|+++.|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888888777765543
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.18 E-value=1.1e-10 Score=88.54 Aligned_cols=86 Identities=24% Similarity=0.336 Sum_probs=80.9
Q ss_pred CchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHH
Q psy6603 519 AEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 598 (724)
Q Consensus 519 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 598 (724)
+..+.+++.+|.++...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+.+|+++++.+|+++.++..++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhh
Q psy6603 599 LQIQMR 604 (724)
Q Consensus 599 ~~~~~~ 604 (724)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 877654
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.17 E-value=1.4e-10 Score=92.50 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Q psy6603 46 EAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFML 125 (724)
Q Consensus 46 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 125 (724)
+|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666666666666666666666666666677777777777766666666666666777766667777777777666666
Q ss_pred CCC
Q psy6603 126 RPT 128 (724)
Q Consensus 126 ~p~ 128 (724)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 654
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.16 E-value=3e-10 Score=90.56 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=86.0
Q ss_pred hhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHH
Q psy6603 9 KNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNA 88 (724)
Q Consensus 9 ~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 88 (724)
++|+..|+++++ .+|.++.+++.+|.++...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 578999999999 778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCc--HHHHHHHHHHHH
Q psy6603 89 LKWEHDN--IQIMRDLSLLQI 107 (724)
Q Consensus 89 ~~~~p~~--~~~~~~la~~~~ 107 (724)
+.+.|.. ......+...+.
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~ 100 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLR 100 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHH
Confidence 9988743 444444444443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.15 E-value=3.2e-10 Score=86.02 Aligned_cols=84 Identities=25% Similarity=0.345 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 105 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 105 (724)
.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34566667777777777777777777777777777777777777777777777777777777777777777676666666
Q ss_pred HHHh
Q psy6603 106 QIQM 109 (724)
Q Consensus 106 ~~~~ 109 (724)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6544
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.09 E-value=4.6e-10 Score=86.51 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=71.6
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhcccc--HHHHH
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN--IQIMR 594 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~ 594 (724)
.+|.++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++++.|.+ .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 3567888999999999999999999999999999999999999999999999999999999999999987754 34444
Q ss_pred HHHHHHHH
Q psy6603 595 DLSLLQIQ 602 (724)
Q Consensus 595 ~l~~~~~~ 602 (724)
.+..++..
T Consensus 82 ~l~~~l~~ 89 (100)
T 3ma5_A 82 ELQDAKLK 89 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44443333
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.05 E-value=1.1e-09 Score=84.39 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCC--cHHHHHH
Q psy6603 24 YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD--NIQIMRD 101 (724)
Q Consensus 24 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~ 101 (724)
+|.++.+++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++++.|. +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 56777888888888888888888888888888888888888888888888888888888888888877553 2333334
Q ss_pred HHHHH
Q psy6603 102 LSLLQ 106 (724)
Q Consensus 102 la~~~ 106 (724)
+..++
T Consensus 83 l~~~l 87 (100)
T 3ma5_A 83 LQDAK 87 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.02 E-value=4.5e-10 Score=86.75 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=67.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCchh-HHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV-CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMR 110 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~ 110 (724)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++.+|+++.++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777888888888888888888888777 88888888888888888888888888888887776533 5
Q ss_pred chHHHHHHHHHHHHhCCCch
Q psy6603 111 DLEGYRETRYQLFMLRPTQR 130 (724)
Q Consensus 111 ~~~~A~~~~~~~l~~~p~~~ 130 (724)
.+.++...|+++...+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 56666666766666666543
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.95 E-value=1.8e-08 Score=82.79 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=90.2
Q ss_pred ccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhh----cCCHHH
Q psy6603 5 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS----DKKYDE 80 (724)
Q Consensus 5 ~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~ 80 (724)
.+++++|+..|+++.+ .... .+. +|.++...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~--~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACE--LNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHH--TTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHc--CCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 3578888888888877 2222 233 888888888888899999888875 577888888888887 788899
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHH----hcchHHHHHHHHHHHHhC
Q psy6603 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQ----MRDLEGYRETRYQLFMLR 126 (724)
Q Consensus 81 A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~ 126 (724)
|+.+|+++.+. .++.+++.||.+|.. .+++++|+..|+++.+..
T Consensus 80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999988875 678888888888888 788888888888888774
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.93 E-value=1.9e-09 Score=83.17 Aligned_cols=90 Identities=12% Similarity=0.042 Sum_probs=76.4
Q ss_pred HHhhhhHhhhcCChHHHHHHHHHhhhcCCCccc-hHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHh
Q psy6603 525 LAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV-CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 603 (724)
Q Consensus 525 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 603 (724)
.+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|+++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 356788999999999999999999999999999 99999999999999999999999999999999888743
Q ss_pred hhHhhHHHHHHHHHhhhhh
Q psy6603 604 RDLEGYREGVSAMENLNEM 622 (724)
Q Consensus 604 ~~~~~a~~~~~~~~~~~~~ 622 (724)
+.+..+...++......|+
T Consensus 75 ~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHHhccCcc
Confidence 4555566666655555544
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.92 E-value=2.9e-08 Score=88.79 Aligned_cols=128 Identities=9% Similarity=-0.041 Sum_probs=99.4
Q ss_pred CCCchhHHHHhhhhHhhh-----cC------ChHHHHHHHHHhhhcCCC--ccchHHHHHHHHhcc-----ccHHHHHHH
Q psy6603 517 KYAEHGETLAMKGLTLNC-----LG------RKEEAYEYVRRGLRNDLK--SHVCWHVYGLLQRSD-----KKYDEAIKC 578 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~-----~g------~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~-----~~~~~A~~~ 578 (724)
..|.++++++..|.+... .| ...+|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 446788888887776643 12 357899999999999999 566999999999995 999999999
Q ss_pred HHHHhhhcccc-HHHHHHHHHHHHH-hhhHhhHHHHHHHHHhhhhhh-hhhhhhhHHHHHHHhCChhHHHHHHHHH
Q psy6603 579 YRNALKWEHDN-IQIMRDLSLLQIQ-MRDLEGYREGVSAMENLNEMQ-CMWFQTECALAYQRLGRWGDTLKKCHEV 651 (724)
Q Consensus 579 ~~~al~~~p~~-~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 651 (724)
|+++++++|+. ..+++..|..++. .|+.+.+...++.++..+|.. +.+ .+...+.-.+|...+.++
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~-------~lan~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHN-------KLLVILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC-------HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh-------hHHHHHHHHHHHHHHHHh
Confidence 99999999975 9999999998877 488888888888888888775 444 223333344555554433
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.91 E-value=9.8e-09 Score=103.31 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=98.5
Q ss_pred HHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc
Q psy6603 472 CALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN 551 (724)
Q Consensus 472 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 551 (724)
.+..+..+|++++|+..++ +++++.+.+. .+.+|....++.++|.+|..+|++++|+.+++++++.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~-------------~aL~~~~~~l-g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i 380 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCR-------------ECLEKQEPVF-ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHH-------------HHHHHHTTTB-CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHH-------------HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3455667788888887744 4444443332 3477888889999999999999999999999999975
Q ss_pred -----CCCccc---hHHHHHHHHhccccHHHHHHHHHHHhh-----hccccHHHH---HHHHHHHHHhhhHhhHHHHHHH
Q psy6603 552 -----DLKSHV---CWHVYGLLQRSDKKYDEAIKCYRNALK-----WEHDNIQIM---RDLSLLQIQMRDLEGYREGVSA 615 (724)
Q Consensus 552 -----~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~---~~l~~~~~~~~~~~~a~~~~~~ 615 (724)
.|+++. .++++|.+|..+|++++|+..|++|++ +.|+++.+. ..++.++..++.+++|...+..
T Consensus 381 ~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 381 YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544 899999999999999999999999998 467776544 4555555555555555555555
Q ss_pred HH
Q psy6603 616 ME 617 (724)
Q Consensus 616 ~~ 617 (724)
+.
T Consensus 461 ~~ 462 (490)
T 3n71_A 461 MR 462 (490)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.88 E-value=4.1e-08 Score=80.60 Aligned_cols=111 Identities=11% Similarity=0.029 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hcchHHHHH
Q psy6603 42 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ----MRDLEGYRE 117 (724)
Q Consensus 42 g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~----~~~~~~A~~ 117 (724)
+++++|+.+|+++.+..+ +.+. +|.+|...+.+++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 478999999999998763 4444 999999999999999999999986 789999999999998 899999999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHH----cCCHHHHHHHHHHHHHhh
Q psy6603 118 TRYQLFMLRPTQRASWIGFAMAYHL----LHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 118 ~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~ 160 (724)
.|+++.+. .++.+.+.+|.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999987 678999999999999 999999999999887654
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.84 E-value=5.8e-09 Score=104.94 Aligned_cols=121 Identities=14% Similarity=0.073 Sum_probs=75.7
Q ss_pred ccCCHHHHHHHHHHHHHc-----CCCch---hHHHHHHHHHhhcCCHHHHHHHHHHHHhh-----CCCcHH---HHHHHH
Q psy6603 40 CLGRKEEAYEYVRRGLRN-----DLKSH---VCWHVYGLLQRSDKKYDEAIKCYRNALKW-----EHDNIQ---IMRDLS 103 (724)
Q Consensus 40 ~~g~~~~A~~~~~~~l~~-----~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~---~~~~la 103 (724)
.+|++++|+..++++++. .|+++ ..+..+|.+|..+|+|++|+.++++++.+ .|+++. .+.+||
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456777777777766642 33333 33666677777777777777777776654 344433 566677
Q ss_pred HHHHHhcchHHHHHHHHHHHHh-----CCCch---hHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 104 LLQIQMRDLEGYRETRYQLFML-----RPTQR---ASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 104 ~~~~~~~~~~~A~~~~~~~l~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
.+|..+|++++|+..+++++++ .|+++ .....++.++..++.+++|...|.++.+..
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766653 34443 344566677777777777777777766543
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.76 E-value=4.2e-08 Score=73.15 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q psy6603 24 YAEHGETLAMKGLTLNCLGR---KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN 95 (724)
Q Consensus 24 ~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~ 95 (724)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.++..+|..++..|+|++|+..|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 45677777777777765554 5777777777777777777777777777777777777777777777777763
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.75 E-value=5e-07 Score=84.91 Aligned_cols=158 Identities=9% Similarity=-0.013 Sum_probs=108.6
Q ss_pred HHHHcCCCchhHH--HHHHHHHhhcCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC
Q psy6603 53 RGLRNDLKSHVCW--HVYGLLQRSDKK---YDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRP 127 (724)
Q Consensus 53 ~~l~~~p~~~~~~--~~lg~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 127 (724)
++....|.+..+| +..|..+...++ +.+|+.+|+++++++|+++.++..++.++... ....|
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~ 251 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHP 251 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCC
Confidence 3445567776664 445666665544 47788888888888888888888888777511 00111
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhH
Q psy6603 128 TQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTV 207 (724)
Q Consensus 128 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 207 (724)
........+ ..+. . ........|. .+.++..++..+...|++++|+..+++++.++|+ ..+
T Consensus 252 ~~~~~~~~l----------~~a~---~-a~~a~~~~~~----~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a 312 (372)
T 3ly7_A 252 LDEKQLAAL----------NTEI---D-NIVTLPELNN----LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLN 312 (372)
T ss_dssp CCHHHHHHH----------HHHH---H-HHHTCGGGTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHH
T ss_pred CchhhHHHH----------HHHH---H-HHHhcccCCc----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHH
Confidence 111100000 1111 1 1123333444 6677778888888889999999999999999975 567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHH
Q psy6603 208 EETYGALKLKLGQYNEAMKHYESLIERNQENTLYY 242 (724)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 242 (724)
+..+|.++...|++++|+..|.+++.++|..+.++
T Consensus 313 ~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 78999999999999999999999999999887533
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.73 E-value=7.3e-08 Score=77.46 Aligned_cols=95 Identities=14% Similarity=-0.054 Sum_probs=63.7
Q ss_pred cchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcC-C-CchhHHHHHHHHHhhcCCHHH
Q psy6603 6 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLG---RKEEAYEYVRRGLRND-L-KSHVCWHVYGLLQRSDKKYDE 80 (724)
Q Consensus 6 ~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~lg~~~~~~g~~~~ 80 (724)
.....+.+.|...+. ..|.+.++.+..|.++.+.+ +.++++.+++..++.+ | ++.++++.+|..+++.|+|++
T Consensus 12 ~~l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 344555666666655 44566677777777777766 4557777777777766 5 456677777777777777777
Q ss_pred HHHHHHHHHhhCCCcHHHHHHH
Q psy6603 81 AIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 81 A~~~~~~a~~~~p~~~~~~~~l 102 (724)
|..+++++++++|++.++....
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 7777777777777776655443
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.73 E-value=6.8e-07 Score=84.02 Aligned_cols=147 Identities=9% Similarity=-0.128 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhccCC---HHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGR---KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 103 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la 103 (724)
++--++..|..+...+. ..+|+.+|+++++.+|+++.++..++.++..... ..|........
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~-------------~~~~~~~~~~~-- 259 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHS-------------QHPLDEKQLAA-- 259 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-------------HSCCCHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc-------------cCCCchhhHHH--
Confidence 34455777887776654 4789999999999999999999988888862100 01111110000
Q ss_pred HHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHH
Q psy6603 104 LLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQD 183 (724)
Q Consensus 104 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 183 (724)
...+... ..++..+|.++.++..++..+...|++++|+..+++++... |+ ...+..+|.++..
T Consensus 260 --------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s-----~~a~~llG~~~~~ 322 (372)
T 3ly7_A 260 --------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MS-----WLNYVLLGKVYEM 322 (372)
T ss_dssp --------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CC-----HHHHHHHHHHHHH
T ss_pred --------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CC-----HHHHHHHHHHHHH
Confidence 0111110 01223344455555555555555555555555555544442 21 2344455555566
Q ss_pred cCCHHHHHHHHHHHhhhhccHh
Q psy6603 184 SGDLEEAVKHLDRFKEQIHDKL 205 (724)
Q Consensus 184 ~g~~~~A~~~~~~~~~~~p~~~ 205 (724)
.|++++|++.|.+++.++|..+
T Consensus 323 ~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHHHSCSHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcC
Confidence 6666666666666666666543
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.69 E-value=5.3e-06 Score=84.39 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=79.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCC-CchhHHHHHHHHHhhcCC---------HHHHHHHHHHHHhhCCCcHHHHH
Q psy6603 31 LAMKGLTLNCLGRKEEAYEYVRRGLRNDL-KSHVCWHVYGLLQRSDKK---------YDEAIKCYRNALKWEHDNIQIMR 100 (724)
Q Consensus 31 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~a~~~~p~~~~~~~ 100 (724)
+...-..+.+.|+.++|+.+|+++.+..- -+...|..+-.++...+. .++|...|+++....-
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~------- 101 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV------- 101 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-------
Confidence 34444566677777777777777665421 124445555444443332 4455555555444321
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHH
Q psy6603 101 DLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMV 180 (724)
Q Consensus 101 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 180 (724)
+.+..++..+...+.+.|++++|..+|+.+.+.. ..| +...+..+...
T Consensus 102 --------------------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~P-----d~~tyn~lI~~ 149 (501)
T 4g26_A 102 --------------------------VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-IQP-----RLRSYGPALFG 149 (501)
T ss_dssp --------------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCC-----CHHHHHHHHHH
T ss_pred --------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC-----ccceehHHHHH
Confidence 1133344444444555555555555544443321 222 23344444445
Q ss_pred HHHcCCHHHHHHHHHHHhhhh-ccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy6603 181 IQDSGDLEEAVKHLDRFKEQI-HDKLTVEETYGALKLKLGQYNEAMKHYESLIER 234 (724)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (724)
+.+.|+.++|.++|+++.+.. ..+...+..+..++.+.|+.++|..+++++.+.
T Consensus 150 ~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 150 FCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 555555555555555544332 123344455555555555555555555555443
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.68 E-value=1.4e-07 Score=70.29 Aligned_cols=72 Identities=13% Similarity=-0.057 Sum_probs=61.6
Q ss_pred CCCchhHHHHHHHHHhhcCC---HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCc
Q psy6603 58 DLKSHVCWHVYGLLQRSDKK---YDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQ 129 (724)
Q Consensus 58 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 129 (724)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.++..+|..++..|++++|+..|+++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57888888888888875555 6889999999999999999999999999999999999999999998888874
No 214
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.64 E-value=1e-06 Score=89.69 Aligned_cols=152 Identities=5% Similarity=-0.047 Sum_probs=109.1
Q ss_pred hchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCC---------hHHHHHHHHHhhhcCCC-ccchHHHHHHHHhcc
Q psy6603 500 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGR---------KEEAYEYVRRGLRNDLK-SHVCWHVYGLLQRSD 569 (724)
Q Consensus 500 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 569 (724)
|++++|+++|+.+... ....+..+|+.+..++...+. .++|.++|+++....-. +..+|..+...+.+.
T Consensus 40 G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~ 118 (501)
T 4g26_A 40 GDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAK 118 (501)
T ss_dssp CCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 3444444444443332 334456677777777765543 57888888888765422 455788888888899
Q ss_pred ccHHHHHHHHHHHhhhc-cccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhh--hhhhhhhhhhHHHHHHHhCChhHHHH
Q psy6603 570 KKYDEAIKCYRNALKWE-HDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLN--EMQCMWFQTECALAYQRLGRWGDTLK 646 (724)
Q Consensus 570 ~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~ 646 (724)
|++++|.++|+++.+.. +.+...+..+...+.+.|+++.|.+.++.|.... |+...| ..+..++.+.|+.++|.+
T Consensus 119 g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 119 DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALLKVSMDTKNADKVYK 196 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHhhCCCHHHHHH
Confidence 99999999998887743 3366778888888888999999999999887665 444555 678888899999999999
Q ss_pred HHHHHHHH
Q psy6603 647 KCHEVDRH 654 (724)
Q Consensus 647 ~~~~~~~~ 654 (724)
+++++.+.
T Consensus 197 ll~~Mr~~ 204 (501)
T 4g26_A 197 TLQRLRDL 204 (501)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887654
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=3.3e-07 Score=73.70 Aligned_cols=93 Identities=10% Similarity=-0.035 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcC---CHHHHHHHHHHHHhhC-C-CcHHHHHHHHHHHHHhcchHHHHHH
Q psy6603 44 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDK---KYDEAIKCYRNALKWE-H-DNIQIMRDLSLLQIQMRDLEGYRET 118 (724)
Q Consensus 44 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~ 118 (724)
...+.+.|.+.+..+|.+..+.+.+|+++.+.+ +.++++..|+.+++.+ | ++.++++.+|..+.+.|++++|..+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456788888888888999999999999999988 6779999999999998 7 5688999999999999999999999
Q ss_pred HHHHHHhCCCchhHHHHH
Q psy6603 119 RYQLFMLRPTQRASWIGF 136 (724)
Q Consensus 119 ~~~~l~~~p~~~~~~~~l 136 (724)
++++++.+|++..+....
T Consensus 94 ~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 999999999998876554
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.55 E-value=5e-06 Score=74.55 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHhhhhcc--HhhHHHHHHHHHHHc-----CChHHHHHHHHHHHHHcCCc-HHHHHHHHHHh-c-cCChH
Q psy6603 186 DLEEAVKHLDRFKEQIHD--KLTVEETYGALKLKL-----GQYNEAMKHYESLIERNQEN-TLYYNKLVEAK-Q-LTNND 255 (724)
Q Consensus 186 ~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~-~-~~~~~ 255 (724)
....|...++++++++|+ +..++..+|.+|... |+.++|..+|+++++++|+. ...+...+..+ . .|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 445777778888888887 566888888888774 88888888888888888864 77777777774 3 37788
Q ss_pred HHHHHHHHHHHhCCCC
Q psy6603 256 DIFQLLTHYISKYPKA 271 (724)
Q Consensus 256 ~a~~~~~~~~~~~~~~ 271 (724)
.+...+++++...|..
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 8888888888877774
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.51 E-value=5.4e-07 Score=69.39 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=68.9
Q ss_pred hHHHHhhhhHhhhcCChHHHHHHHHHhhhcC-------CCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHH
Q psy6603 522 GETLAMKGLTLNCLGRKEEAYEYVRRGLRND-------LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 594 (724)
Q Consensus 522 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 594 (724)
+.-.+.+|..+...|++..|+.+|++|++.. +..+.++..+|.++.++|++++|+..+++++++.|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4567899999999999999999999999863 344568999999999999999999999999999999999988
Q ss_pred HHHH
Q psy6603 595 DLSL 598 (724)
Q Consensus 595 ~l~~ 598 (724)
+++.
T Consensus 85 n~~~ 88 (104)
T 2v5f_A 85 NLKY 88 (104)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 8764
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.47 E-value=1.4e-06 Score=66.98 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-------CCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRND-------LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIM 99 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 99 (724)
++.-.+.+|..++..|+|..|+.+|+.+++.. +..+.++..+|.++.++|++++|+..+++++.++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34566778888888888888888888887642 23455677777777777777777777777777777777776
Q ss_pred HHHH
Q psy6603 100 RDLS 103 (724)
Q Consensus 100 ~~la 103 (724)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6655
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.47 E-value=5.9e-07 Score=88.80 Aligned_cols=103 Identities=13% Similarity=0.055 Sum_probs=80.6
Q ss_pred hhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc-----C
Q psy6603 478 RLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN-----D 552 (724)
Q Consensus 478 ~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~ 552 (724)
..|++++|+..++ +++++.+.+ ..|.+|....++.++|.+|..+|++++|+.++++++++ .
T Consensus 310 ~~g~~~eA~~~~~-------------~~L~i~~~~-lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 375 (433)
T 3qww_A 310 HYKSPSELLEICE-------------LSQEKMSSV-FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP 375 (433)
T ss_dssp TTSCHHHHHHHHH-------------HHHHHHTTT-BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred hccCHHHHHHHHH-------------HHHHHhhCc-cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC
Confidence 4466666666533 334433332 24577888889999999999999999999999999975 4
Q ss_pred CCccc---hHHHHHHHHhccccHHHHHHHHHHHhh-----hccccHHHHH
Q psy6603 553 LKSHV---CWHVYGLLQRSDKKYDEAIKCYRNALK-----WEHDNIQIMR 594 (724)
Q Consensus 553 p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~ 594 (724)
|+++. .++++|.+|..+|++++|+..|++|++ +.|+++.+..
T Consensus 376 ~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 376 VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 55554 899999999999999999999999998 5678876554
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.40 E-value=6.4e-06 Score=81.69 Aligned_cols=96 Identities=6% Similarity=-0.096 Sum_probs=73.7
Q ss_pred HhhhcCChHHHHHHHHHhhhc-----CCCccc---hHHHHHHHHhccccHHHHHHHHHHHhh-----hccccHHHHHHHH
Q psy6603 531 TLNCLGRKEEAYEYVRRGLRN-----DLKSHV---CWHVYGLLQRSDKKYDEAIKCYRNALK-----WEHDNIQIMRDLS 597 (724)
Q Consensus 531 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~ 597 (724)
-+...|++++|+..++++++. .|+++. ++.++|.+|..+|+|++|+.++++++. ..|+++.+...+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l- 374 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV- 374 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH-
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH-
Confidence 345678888888888888864 444444 778888888888888888888888887 356666554444
Q ss_pred HHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhh
Q psy6603 598 LLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEI 658 (724)
Q Consensus 598 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 658 (724)
+.||.+|..+|++++|+..|+++++.+...
T Consensus 375 -------------------------------~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 375 -------------------------------MKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp -------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 457779999999999999999999886654
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.40 E-value=9.6e-07 Score=87.32 Aligned_cols=91 Identities=8% Similarity=-0.048 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHH-----cCCCchh---HHHHHHHHHhhcCCHHHHHHHHHHHHhh-----CCCcHH---HHHHHHHH
Q psy6603 42 GRKEEAYEYVRRGLR-----NDLKSHV---CWHVYGLLQRSDKKYDEAIKCYRNALKW-----EHDNIQ---IMRDLSLL 105 (724)
Q Consensus 42 g~~~~A~~~~~~~l~-----~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~---~~~~la~~ 105 (724)
|++++|+..++++++ +.|+++. .+..+|.+|..+|+|++|+.++++++.+ .|+++. .+.+||.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 566667776666664 2344433 3566666777777777777777766654 344433 56667777
Q ss_pred HHHhcchHHHHHHHHHHHHh-----CCCchhH
Q psy6603 106 QIQMRDLEGYRETRYQLFML-----RPTQRAS 132 (724)
Q Consensus 106 ~~~~~~~~~A~~~~~~~l~~-----~p~~~~~ 132 (724)
|..+|++++|+..|++++++ .|+++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 77777777777777666653 3555543
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.36 E-value=6.3e-07 Score=88.93 Aligned_cols=60 Identities=8% Similarity=-0.127 Sum_probs=28.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhh-----CCCcHH---HHHHHHHHHHHhcchHHHHHHHHHHHH
Q psy6603 65 WHVYGLLQRSDKKYDEAIKCYRNALKW-----EHDNIQ---IMRDLSLLQIQMRDLEGYRETRYQLFM 124 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~~l~ 124 (724)
+..+|.+|..+|+|++|+.++++++.+ .|+++. .+.+||.+|..+|++++|+..++++++
T Consensus 332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444444555555555555555544433 222222 344455555555555555555554443
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.16 E-value=1.4e-05 Score=61.53 Aligned_cols=74 Identities=16% Similarity=0.055 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHhccCCHHH---HHHHHHHHHHcC-C-CchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEE---AYEYVRRGLRND-L-KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIM 99 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~---A~~~~~~~l~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 99 (724)
.+.++.+..|.++.+..+..+ ++.+++..++.+ | ..-.+.+.+|..+++.|+|++|..+++.+++..|+|.++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 445555555555555554444 555555555544 3 3444555555555555555555555555555555555543
No 224
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.10 E-value=6.7e-05 Score=58.90 Aligned_cols=125 Identities=6% Similarity=0.061 Sum_probs=84.9
Q ss_pred CCCchhHHHHHHHHHHHcCCH------HHHHHHHHHHHHhhccCCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy6603 126 RPTQRASWIGFAMAYHLLHDF------DMACNILEAFRKTQQVTNS-YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFK 198 (724)
Q Consensus 126 ~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 198 (724)
.|.+++.|..........|+. +.-+++|+++....+.... ........|...+.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 455555555555555555555 4555555555444432211 223344555555644 56689999999999999
Q ss_pred hhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHhcc
Q psy6603 199 EQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQL 251 (724)
Q Consensus 199 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 251 (724)
......+.+|...|..-.++|+...|.+.+.+++...|.....+.....-+..
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~~ 140 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLNL 140 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhhc
Confidence 88777788999999999999999999999999999999877655544443433
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.07 E-value=6e-05 Score=58.12 Aligned_cols=94 Identities=10% Similarity=-0.028 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHH---HHHHHHHHHhhC-C-CcHHHHHHHHHHHHHhcchHHHHH
Q psy6603 43 RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE---AIKCYRNALKWE-H-DNIQIMRDLSLLQIQMRDLEGYRE 117 (724)
Q Consensus 43 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~a~~~~-p-~~~~~~~~la~~~~~~~~~~~A~~ 117 (724)
....+...|.+.+..++.+..+.+.+|+++.+..+..+ ++..++..+..+ | ...+.++.||..+.+.|+|++|..
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34566777787777788889999999999999887776 999999999877 5 467799999999999999999999
Q ss_pred HHHHHHHhCCCchhHHHHH
Q psy6603 118 TRYQLFMLRPTQRASWIGF 136 (724)
Q Consensus 118 ~~~~~l~~~p~~~~~~~~l 136 (724)
+++.+++..|++..+....
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHH
Confidence 9999999999998876544
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.76 E-value=0.00056 Score=53.83 Aligned_cols=108 Identities=7% Similarity=-0.033 Sum_probs=87.8
Q ss_pred CCChHHHHHHHHHHHhccCCH------HHHHHHHHHHHHcCCCch--------hHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy6603 24 YAEHGETLAMKGLTLNCLGRK------EEAYEYVRRGLRNDLKSH--------VCWHVYGLLQRSDKKYDEAIKCYRNAL 89 (724)
Q Consensus 24 ~p~~~~~~~~~a~~~~~~g~~------~~A~~~~~~~l~~~p~~~--------~~~~~lg~~~~~~g~~~~A~~~~~~a~ 89 (724)
.|.+++.|..........|+. ++-++.|++++..-|... ..|...+.. ...++.++|...|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 367888998888888888998 888899999997666432 235555544 45689999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhH
Q psy6603 90 KWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRAS 132 (724)
Q Consensus 90 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 132 (724)
.+....+.+|...|..-.++|+...|.+.+.+++...|.....
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 8888888899999999999999999999999999988876544
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.71 E-value=0.00015 Score=58.54 Aligned_cols=92 Identities=12% Similarity=0.006 Sum_probs=49.7
Q ss_pred HHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccc---------hHHHHHHHHhccccHHHHHHHHHHHhhhc--------
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV---------CWHVYGLLQRSDKKYDEAIKCYRNALKWE-------- 586 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------- 586 (724)
++..-...+...|.|+.|+-....++.+..+++. ++..+|.+++..|+|..|...|++++...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444445555566666666666655544222222 55566666666666666666666665521
Q ss_pred -----------------cccHHHHHHHHHHHHHhhhHhhHHHHHHH
Q psy6603 587 -----------------HDNIQIMRDLSLLQIQMRDLEGYREGVSA 615 (724)
Q Consensus 587 -----------------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 615 (724)
+.+.++.+.++.|+.++|++++|+..++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 12234555555555555555555555444
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.63 E-value=0.00044 Score=55.92 Aligned_cols=115 Identities=15% Similarity=0.036 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchh---------HHHHHHHHHhhcCCHHHHHHHHHHHHhhC---CCcH
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV---------CWHVYGLLQRSDKKYDEAIKCYRNALKWE---HDNI 96 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~a~~~~---p~~~ 96 (724)
.+++.....++..|.|+.|+-....++....+++. +...+|..++..|+|..|...|++++... +.++
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35666777788889999998888887765433332 56778899999999999999999887642 2222
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6603 97 QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEA 155 (724)
Q Consensus 97 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 155 (724)
.....++.. .... .... .+.+.+..+.++.|+...|++.+|+..++.
T Consensus 101 s~~~~~~~~----ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGNS----ASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred Ccccccccc----CCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 111001000 0000 0000 123445666677777777777777766554
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.54 E-value=0.0015 Score=51.20 Aligned_cols=80 Identities=10% Similarity=-0.039 Sum_probs=68.8
Q ss_pred CchhHHHHhhhhHhhhcCCh---HHHHHHHHHhhhcCCC-ccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHH
Q psy6603 519 AEHGETLAMKGLTLNCLGRK---EEAYEYVRRGLRNDLK-SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 594 (724)
Q Consensus 519 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 594 (724)
...+++-+++|+++.+..+. .+++.+++..+..+|. .-++++.+|..+.++|+|++|..+.+.+|+..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45677999999999998765 4799999999998885 4459999999999999999999999999999999988776
Q ss_pred HHHH
Q psy6603 595 DLSL 598 (724)
Q Consensus 595 ~l~~ 598 (724)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.49 E-value=0.0012 Score=51.00 Aligned_cols=80 Identities=10% Similarity=-0.034 Sum_probs=68.3
Q ss_pred chhHHHHhhhhHhhhcCCh---HHHHHHHHHhhhcCCC-ccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHH
Q psy6603 520 EHGETLAMKGLTLNCLGRK---EEAYEYVRRGLRNDLK-SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 595 (724)
Q Consensus 520 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 595 (724)
..+.+-+++|+++.+..+. .+++.+++..++.+|. .-++++.+|..+.++|+|++|+.+.+.++++.|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3567899999999988765 4799999999998884 45599999999999999999999999999999999988765
Q ss_pred HHHH
Q psy6603 596 LSLL 599 (724)
Q Consensus 596 l~~~ 599 (724)
...+
T Consensus 118 k~~I 121 (134)
T 3o48_A 118 KSMV 121 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 231
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=97.47 E-value=0.067 Score=49.61 Aligned_cols=218 Identities=13% Similarity=0.144 Sum_probs=128.8
Q ss_pred HHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHH----HHHhcCCCCCchhHHHHhhhhHhhhcCChH-HHHHHHHH
Q psy6603 473 ALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFA----KQILTNPKYAEHGETLAMKGLTLNCLGRKE-EAYEYVRR 547 (724)
Q Consensus 473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~ 547 (724)
..=|.+.+++++|++++..-...+.+.|++.-|..+. +.+... +.+.+.+....+..++.....-+ .=..+.++
T Consensus 42 ~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~-~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ 120 (336)
T 3lpz_A 42 AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQA-GQRVDGASRGKLLGCLRLFQPGEPVRKRFVKE 120 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence 4446778888888888888777777777777666554 333222 23334456666666666655421 11223333
Q ss_pred hhh-------cCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhh
Q psy6603 548 GLR-------NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLN 620 (724)
Q Consensus 548 al~-------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 620 (724)
+++ ..-.++..+..+|..|.+.+++.+|...|- +. +.++++.+..+-. +...+..
T Consensus 121 ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg-~~~s~~~~a~mL~---------------ew~~~~~ 182 (336)
T 3lpz_A 121 MIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LG-TKESPEVLARMEY---------------EWYKQDE 182 (336)
T ss_dssp HHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS-CTTHHHHHHHHHH---------------HHHHTSC
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hc-CCchHHHHHHHHH---------------HHHHhcC
Confidence 332 223466688889999999999999988883 22 2222234333221 1222223
Q ss_pred hhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc------------------c--chhHHHHHh---hhhHHH
Q psy6603 621 EMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEIIED------------------Q--FDFHTYCMR---KMTLRS 677 (724)
Q Consensus 621 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------~--~~~~~~~~~---~~~~~~ 677 (724)
+.....+-......|...|+...|...++...+.+....|. . +++..++.. +.....
T Consensus 183 ~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~l 262 (336)
T 3lpz_A 183 SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDL 262 (336)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34323333455668889999999999888777765332221 1 123322221 112222
Q ss_pred HHH-HHhHHhhhcCCh-HHHHHHHHHHHHHHHhh
Q psy6603 678 YVR-LLRLEDVLRSHP-FYYTAARCAIQVYLRLH 709 (724)
Q Consensus 678 y~~-~~~~~~~~~~~~-~~~~~~~~~~~~y~~~~ 709 (724)
+.. ..+|...++..| .|....-..+++||.+-
T Consensus 263 F~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~ 296 (336)
T 3lpz_A 263 FRQLKSKYEANLNELNGIWDTALELIAEMYFGIQ 296 (336)
T ss_dssp HHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCC
Confidence 332 566777777777 89999999999999983
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.46 E-value=0.0032 Score=49.38 Aligned_cols=78 Identities=9% Similarity=-0.048 Sum_probs=57.1
Q ss_pred CChHHHHHHHHHHHhccCCHH---HHHHHHHHHHHcCC-CchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHH
Q psy6603 25 AEHGETLAMKGLTLNCLGRKE---EAYEYVRRGLRNDL-KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 100 (724)
Q Consensus 25 p~~~~~~~~~a~~~~~~g~~~---~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 100 (724)
...+++.+..|.++.+..+.. +++.+++..++..| ..-++.+.+|..+++.|+|++|..+.+.+++..|+|.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 346677788888877776544 57778888777776 45667777888888888888888888888888888776654
Q ss_pred HH
Q psy6603 101 DL 102 (724)
Q Consensus 101 ~l 102 (724)
..
T Consensus 116 Lk 117 (144)
T 1y8m_A 116 LK 117 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.44 E-value=0.0015 Score=50.50 Aligned_cols=78 Identities=10% Similarity=-0.031 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHhccCCH---HHHHHHHHHHHHcCC-CchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q psy6603 27 HGETLAMKGLTLNCLGRK---EEAYEYVRRGLRNDL-KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102 (724)
Q Consensus 27 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 102 (724)
.+.+.+..|.++.+..+. .+++.+++..++.+| ...++++.+|..+++.|+|++|..+.+.+++..|+|.++....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 457777888777777654 357888888877777 3467788888888888888888888888888888887765444
Q ss_pred HH
Q psy6603 103 SL 104 (724)
Q Consensus 103 a~ 104 (724)
..
T Consensus 119 ~~ 120 (134)
T 3o48_A 119 SM 120 (134)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.41 E-value=0.053 Score=52.20 Aligned_cols=233 Identities=14% Similarity=0.067 Sum_probs=146.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhH-----HHHHHHHHhh-cCCHHHHHHHHHHHHhhCCCcH----H-
Q psy6603 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVC-----WHVYGLLQRS-DKKYDEAIKCYRNALKWEHDNI----Q- 97 (724)
Q Consensus 29 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~lg~~~~~-~g~~~~A~~~~~~a~~~~p~~~----~- 97 (724)
.+.+.+|..|...|++++-.+++......-+.-+.+ -..+-..+.. -+..+.-+..+..+++...+.- .
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999998888765433332222 1222223322 3555555666666665432221 1
Q ss_pred -HHHHHHHHHHHhcchHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhh
Q psy6603 98 -IMRDLSLLQIQMRDLEGYRETRYQLFMLRPT------QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEH 170 (724)
Q Consensus 98 -~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 170 (724)
.-..+|.+|+..|++.+|.+.+.++.+.-.. -.+.+..-..+|...+++.++...+..+......-+..+...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2347999999999999999999888763211 235667778899999999999999998877654332222345
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHhhhhc-----cHhhHHHHHHHHHHHcCChHHHHHHHH-HHHHHcCCcH--HH
Q psy6603 171 SELLLYQSMVIQ-DSGDLEEAVKHLDRFKEQIH-----DKLTVEETYGALKLKLGQYNEAMKHYE-SLIERNQENT--LY 241 (724)
Q Consensus 171 ~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~p~~~--~~ 241 (724)
+.....-|..+. ..++|..|...|-++++... ....+...++.+-...++..+--.... +..... ..+ ..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~~pei~~ 258 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-SGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-CSHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc-CCccHHH
Confidence 666667788899 89999999999998875442 223344555555555555333222211 111111 223 34
Q ss_pred HHHHHHHhccCChHHHHHHHH
Q psy6603 242 YNKLVEAKQLTNNDDIFQLLT 262 (724)
Q Consensus 242 ~~~l~~~~~~~~~~~a~~~~~ 262 (724)
+..+...+..+++......+.
T Consensus 259 l~~L~~a~~~~dl~~f~~iL~ 279 (394)
T 3txn_A 259 MKSVAEASHKRSLADFQAALK 279 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 555666677777765544443
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.37 E-value=0.23 Score=53.31 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=34.0
Q ss_pred hHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHH
Q psy6603 10 NGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRG 54 (724)
Q Consensus 10 ~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 54 (724)
..+..++.+-++..+|...-+-.....+|+..|+|++|+.+--.+
T Consensus 52 ~~i~~ie~l~ed~~f~~r~laalvaSkvyy~Lg~~~~al~yaL~a 96 (963)
T 4ady_A 52 NELPDIEALYDDDTFSDREMAALIASKVYYNLGEYESAVKYALAA 96 (963)
T ss_dssp TTHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCCCcchHHHHHHHHHHHheeccchHHHHHHHHhC
Confidence 345556666667778877777778888999999999998877664
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.006 Score=50.47 Aligned_cols=100 Identities=12% Similarity=0.096 Sum_probs=74.8
Q ss_pred hhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHH
Q psy6603 532 LNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRE 611 (724)
Q Consensus 532 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 611 (724)
..+.|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-..+ .+..+|...|+.+...+
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~--------~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFD--------KLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH--------HHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH--------HHHHHHHHhCCHHHHHH
Confidence 35689999999987765 567799999999999999999999999886543 56667788888877665
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHH
Q psy6603 612 GVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHE 650 (724)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 650 (724)
.-+..........++ .++...|++++++++|.+
T Consensus 82 la~iA~~~g~~n~af------~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTREDFGSML------LNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTCHHHHH------HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCccHHHHH------HHHHHcCCHHHHHHHHHH
Confidence 555554444443333 267788888888887753
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.93 E-value=0.6 Score=50.17 Aligned_cols=188 Identities=10% Similarity=0.023 Sum_probs=89.9
Q ss_pred CCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhh---CCCcHHHHHHHHHH---HHHhcc--hHHHHHHHHHHHHhCCCch
Q psy6603 59 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW---EHDNIQIMRDLSLL---QIQMRD--LEGYRETRYQLFMLRPTQR 130 (724)
Q Consensus 59 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~la~~---~~~~~~--~~~A~~~~~~~l~~~p~~~ 130 (724)
|....+-.....+|+.+|+|++|+.+--.|=.. +..+.-+-..++.| |..... ++.-... .....++|.-.
T Consensus 67 ~~r~laalvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~-~~~~~id~rL~ 145 (963)
T 4ady_A 67 SDREMAALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQF-YTKDIIDPKLT 145 (963)
T ss_dssp TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTG-GGSSCSCHHHH
T ss_pred chHHHHHHHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhcccccccc-ccccccCHHHH
Confidence 333444566688999999999999887765332 22322222222222 211110 0000000 00001223333
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHh------hcc--CCCCChhhHHHHHHHHHHHHHcCCHHHH-HHHHHHHhhhh
Q psy6603 131 ASWIGFAMAYHLLHDFDMACNILEAFRKT------QQV--TNSYDFEHSELLLYQSMVIQDSGDLEEA-VKHLDRFKEQI 201 (724)
Q Consensus 131 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~--~p~~~~~~~~~~~~~~~~~~~~g~~~~A-~~~~~~~~~~~ 201 (724)
.....+..-+...|.+.+|+.++-+..+. ... .++.......++.++-.+-...-..+.- .++++-++++.
T Consensus 146 ~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy 225 (963)
T 4ady_A 146 SIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFL 225 (963)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Confidence 34445555667788888888775443221 110 0000012334444443333332222221 22333333322
Q ss_pred ccH-hhHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Q psy6603 202 HDK-LTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAK 249 (724)
Q Consensus 202 p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 249 (724)
... ..-+.....|...+++.+.+.+.|.+++. .++....+.++..+
T Consensus 226 ~k~~~~dy~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL 272 (963)
T 4ady_A 226 MNMPNCDYLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDL 272 (963)
T ss_dssp HHSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHH
Confidence 111 12345667888899999999999999874 45555555555553
No 238
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.85 E-value=0.13 Score=41.22 Aligned_cols=158 Identities=15% Similarity=0.037 Sum_probs=96.2
Q ss_pred HHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhh-
Q psy6603 472 CALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR- 550 (724)
Q Consensus 472 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~- 550 (724)
++.++.-.|.+..++-.+... +...+.+....|+.+..++..|+..+++.+.
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~l---------------------------NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~ 91 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHKL---------------------------NTCTSKYYESLCYKKKKDYKKAIKSLESILEG 91 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHTC---------------------------CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhhhhhcchHhHHHHHHHhc---------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777777777776654432 3344666677778888888888888887772
Q ss_pred -c---------------CCCccc-hHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHH-----------HH--
Q psy6603 551 -N---------------DLKSHV-CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL-----------LQ-- 600 (724)
Q Consensus 551 -~---------------~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-----------~~-- 600 (724)
. +|.+.+ .+..+|.++...|+.+||+.+|.......|-.+.+-..+-. +.
T Consensus 92 kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~ 171 (242)
T 3kae_A 92 KVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQT 171 (242)
T ss_dssp CSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC--------
T ss_pred ccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhh
Confidence 1 333433 56678899999999999999999888877755443321100 00
Q ss_pred ----HHhhhHhhHHH--------HHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHh
Q psy6603 601 ----IQMRDLEGYRE--------GVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFS 656 (724)
Q Consensus 601 ----~~~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 656 (724)
.+...+....+ ..+.....-|.--.++-..-+..|+..|-.++....|..+..+.|
T Consensus 172 ~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 172 GRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp ---CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 00000111111 111222222433444445567788999999999999988776633
No 239
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.75 E-value=0.16 Score=40.78 Aligned_cols=119 Identities=16% Similarity=0.069 Sum_probs=80.7
Q ss_pred cccchhhHHHHHHHhhCCCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHH
Q psy6603 4 EHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIK 83 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 83 (724)
.=.+|+.++-+-.-+.. ..| +.-..++..++-.|.+..|+-.+.. -+...+.+.-..|+...++|..|+.
T Consensus 14 kY~dYdt~~fLsa~L~~--~~~---eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~ 83 (242)
T 3kae_A 14 RYRDYETAIFLAACLLP--CKP---EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIK 83 (242)
T ss_dssp HTTCHHHHHHHHHHHC---------CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccccHHHHHHHHHcc--CCh---HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666544443433 223 5667788888999999988877653 3445556677889999999999999
Q ss_pred HHHHHHh--h---------------CCCcHH-HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhH
Q psy6603 84 CYRNALK--W---------------EHDNIQ-IMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRAS 132 (724)
Q Consensus 84 ~~~~a~~--~---------------~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 132 (724)
+++..++ . +|.+.+ .+..+|.++.+.|+.++|+..+.......|-.+.+
T Consensus 84 ~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 84 SLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 9999883 2 233333 35567778888888888888888877777754443
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.67 E-value=0.043 Score=60.44 Aligned_cols=28 Identities=11% Similarity=-0.236 Sum_probs=19.0
Q ss_pred hhHHHHhhhhHhhhcCChHHHHHHHHHh
Q psy6603 521 HGETLAMKGLTLNCLGRKEEAYEYVRRG 548 (724)
Q Consensus 521 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a 548 (724)
+...|..+|..+.+.|+++.|+.+|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3446777777777777777777777655
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.64 E-value=0.12 Score=49.62 Aligned_cols=172 Identities=10% Similarity=0.033 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH-----HHHHHHHHHHH-hcchHHHHHHHHHHHHhCCCchhHH---
Q psy6603 63 VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ-----IMRDLSLLQIQ-MRDLEGYRETRYQLFMLRPTQRASW--- 133 (724)
Q Consensus 63 ~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~-----~~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~--- 133 (724)
.+...+|..|...|++++-..++......-+.-+. ....+...+.. .+..+.-++.....++-..+....|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999988888776544332222 22333333322 2333444455555554332222222
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhc---cH---
Q psy6603 134 ---IGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIH---DK--- 204 (724)
Q Consensus 134 ---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---~~--- 204 (724)
..+|..|+..|+|.+|...+.+..+......+ .....+++.....+|...+++.++...+.++..... .+
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDD-KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 36789999999999999998888877654322 345667777888889999999999988888765431 11
Q ss_pred -hhHHHHHHHHHH-HcCChHHHHHHHHHHHHHc
Q psy6603 205 -LTVEETYGALKL-KLGQYNEAMKHYESLIERN 235 (724)
Q Consensus 205 -~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~ 235 (724)
......-|..+. ..++|..|...|-.++...
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 224455577777 7899999988888876543
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.38 Score=47.75 Aligned_cols=197 Identities=11% Similarity=0.028 Sum_probs=124.8
Q ss_pred cccchhhHHHHHHHhhC----CCCCCChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHH---HHHh-hc
Q psy6603 4 EHKQYKNGLKFAKQILT----NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYG---LLQR-SD 75 (724)
Q Consensus 4 ~~~~~~~A~~~~~~~l~----~p~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg---~~~~-~~ 75 (724)
.+|+++.|++.+-.+.+ ....+....++..+..+++..|+++...+.+.-..+.......+-..+. .-+. ..
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 35788888887755443 2234455677888888899999999887777654443332222211111 1111 11
Q ss_pred CCHHH--HHHHHHHHHhhCCC-------cHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CC----chhHHHHHHHHH
Q psy6603 76 KKYDE--AIKCYRNALKWEHD-------NIQIMRDLSLLQIQMRDLEGYRETRYQLFMLR--PT----QRASWIGFAMAY 140 (724)
Q Consensus 76 g~~~~--A~~~~~~a~~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~ 140 (724)
...+. -+...........+ .......|+.++...|++.+|...+..+..-. .. -.+.+....+++
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 21111 11111111011111 23456789999999999999999998776321 11 235777789999
Q ss_pred HHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhh
Q psy6603 141 HLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQ 200 (724)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 200 (724)
...+++..|...+.++.......+.........+...|..+...++|.+|-..|..+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999999999988754433333323345667778899999999999999999998764
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.018 Score=60.54 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=83.4
Q ss_pred cCC-HHHHHHHHHHHHHcCCCchhHHHHH--HHHHhhcCCHHHHHHHHHHHHhh--------CCC----------cHHHH
Q psy6603 41 LGR-KEEAYEYVRRGLRNDLKSHVCWHVY--GLLQRSDKKYDEAIKCYRNALKW--------EHD----------NIQIM 99 (724)
Q Consensus 41 ~g~-~~~A~~~~~~~l~~~p~~~~~~~~l--g~~~~~~g~~~~A~~~~~~a~~~--------~p~----------~~~~~ 99 (724)
.|+ ++.|+..|++....+|.....+... +.......+--+|+....++++. .+. ....+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL 340 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLL 340 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHH
Confidence 445 5789999999988888754433221 11111223345677777666632 122 23466
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6603 100 RDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEA 155 (724)
Q Consensus 100 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 155 (724)
..-+..+...|+++-|+.+.++++...|.....|+.|+.+|..+|+|+.|+-.++.
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 66788888999999999999999999999999999999999999999999977665
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.061 Score=56.54 Aligned_cols=111 Identities=9% Similarity=0.073 Sum_probs=82.1
Q ss_pred hhhHHHHHHHhhCCCCCCChHHHHHHHHHHH--hcc-CCHHHHHHHHHHHHHc--------CCCc----------hhHHH
Q psy6603 8 YKNGLKFAKQILTNPKYAEHGETLAMKGLTL--NCL-GRKEEAYEYVRRGLRN--------DLKS----------HVCWH 66 (724)
Q Consensus 8 ~~~A~~~~~~~l~~p~~p~~~~~~~~~a~~~--~~~-g~~~~A~~~~~~~l~~--------~p~~----------~~~~~ 66 (724)
++.|+.+++++.. .+|... +++..+.+. ... .+--+|+.++.+.++. .+.+ ...+.
T Consensus 265 ~~~a~~~le~L~~--~~p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~ 341 (754)
T 4gns_B 265 VDFTIDYLKGLTK--KDPIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLN 341 (754)
T ss_dssp HHHHHHHHHHHHH--HCGGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hCCchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHH
Confidence 5779999999888 556543 333333322 222 3445788989888742 1222 22455
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHH
Q psy6603 67 VYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121 (724)
Q Consensus 67 ~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 121 (724)
..+..+...|+++-|+.+-++++...|.....|+.|+.+|..+|+++.|+-.++.
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 5588888899999999999999999999999999999999999999999965543
No 245
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.18 E-value=0.046 Score=58.68 Aligned_cols=101 Identities=6% Similarity=-0.151 Sum_probs=83.0
Q ss_pred chhHHHHhhhhHhhhcCChHHHHHHHHHhhhc----CCCccchHHHHHHHHhccccHHHHHHHHHHHhhhc-cccHHHHH
Q psy6603 520 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN----DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE-HDNIQIMR 594 (724)
Q Consensus 520 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 594 (724)
....+++.+...|++.|+.++|.++|.++-+. -.-+...|+.+...|++.|+.++|.+.|+++.+.. ..|...|.
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34457999999999999999999999775432 23466789999999999999999999999998843 34677888
Q ss_pred HHHHHHHHhhhH-hhHHHHHHHHHhhh
Q psy6603 595 DLSLLQIQMRDL-EGYREGVSAMENLN 620 (724)
Q Consensus 595 ~l~~~~~~~~~~-~~a~~~~~~~~~~~ 620 (724)
.+..++++.|+. +.|.+.++.|....
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 888899998884 78889999998766
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.46 Score=39.31 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 105 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~ 105 (724)
.|++..+.++. ..|+++.|.+..+.. ++...|..+|......|+++-|..+|+++-. +..+..+
T Consensus 6 ~D~~~rF~LAL---~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~L 69 (177)
T 3mkq_B 6 QDPHIRFDLAL---EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFL 69 (177)
T ss_dssp SCHHHHHHHHH---HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHH
T ss_pred CChHHHHHHHH---hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHH
Confidence 44556666554 478999999887764 5677899999999999999999999987533 2233344
Q ss_pred HHHhcchHHHH
Q psy6603 106 QIQMRDLEGYR 116 (724)
Q Consensus 106 ~~~~~~~~~A~ 116 (724)
|...|+.+.-.
T Consensus 70 y~~tg~~e~L~ 80 (177)
T 3mkq_B 70 YLVTGDVNKLS 80 (177)
T ss_dssp HHHHTCHHHHH
T ss_pred HHHhCCHHHHH
Confidence 44555554443
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=96.13 E-value=0.83 Score=42.19 Aligned_cols=234 Identities=13% Similarity=0.071 Sum_probs=132.6
Q ss_pred HHHcCCHHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHH---
Q psy6603 433 MLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFA--- 509 (724)
Q Consensus 433 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~--- 509 (724)
....|++=||.+.++.. ..=|.+.+++++|++++......+.+.|++..|..+.
T Consensus 23 ~I~~G~yYEAhQ~~Rtl-----------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRTI-----------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHTCHHHHHHHHHHH-----------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHHHH-----------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHH
Confidence 34557777777777664 4456677888888888888877777777777666643
Q ss_pred -HHHhcCCCCCchhHHHHhhhhHhhhcCChH-HHHHHHHHhhhc-------CCCccchHHHHHHHHhccccHHHHHHHHH
Q psy6603 510 -KQILTNPKYAEHGETLAMKGLTLNCLGRKE-EAYEYVRRGLRN-------DLKSHVCWHVYGLLQRSDKKYDEAIKCYR 580 (724)
Q Consensus 510 -~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 580 (724)
+.+... +.+.+.+....+..++......+ .=....+++++- .-.++..+..+|..+...|++.+|..+|-
T Consensus 80 vev~~~~-~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 80 LEVYDLA-EVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHT-TCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHc-CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 333333 33445556666666665543222 123334444432 22466788999999999999999888876
Q ss_pred HHhhhccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHh---hhhhhhhhhhhhHHHHHHHhCChhHHHHHHHHHHHHHhh
Q psy6603 581 NALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMEN---LNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSE 657 (724)
Q Consensus 581 ~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 657 (724)
.. +.+++..+..+-. +...+ ..|.....+.......|...|+...|...++...+....
T Consensus 159 ~~---~~~s~~~~a~~l~---------------~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~ 220 (312)
T 2wpv_A 159 LG---THDSMIKYVDLLW---------------DWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFIE 220 (312)
T ss_dssp TS---CHHHHHHHHHHHH---------------HHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHH
T ss_pred hC---CCccHHHHHHHHH---------------HHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh
Confidence 22 1123333333221 11111 122332222234445677888888888888877766521
Q ss_pred --------h---------hc--ccchhHHHHHh---hhhHHHHHH-HHhHHhhhcCChHHHHHHHHHHHHHHHhhcC
Q psy6603 658 --------I---------IE--DQFDFHTYCMR---KMTLRSYVR-LLRLEDVLRSHPFYYTAARCAIQVYLRLHDR 711 (724)
Q Consensus 658 --------~---------~~--~~~~~~~~~~~---~~~~~~y~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 711 (724)
+ .| ..+++..++.. +.....|.. ..+|...|+ .|....-..+++|+.+-..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~p~~pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~---~~~~~L~~Ig~~yFgi~~~ 294 (312)
T 2wpv_A 221 KFHPKYEKIDKNGYEIVFFEDYSDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ---AYKSELEFLGQEYFNIVAP 294 (312)
T ss_dssp HHCCCEEEEEETTEEEEEESSCHHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHHCCC--
T ss_pred hcccccccccccccCCCCCCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCC
Confidence 0 12 11333333322 112222333 355555666 6777778889999987663
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.09 E-value=0.036 Score=59.48 Aligned_cols=106 Identities=4% Similarity=-0.129 Sum_probs=87.0
Q ss_pred chHHHHHHHHhccccHHHHHHHHHHHhhh----ccccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhh--hhhhhhhhhh
Q psy6603 557 VCWHVYGLLQRSDKKYDEAIKCYRNALKW----EHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLN--EMQCMWFQTE 630 (724)
Q Consensus 557 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 630 (724)
..++.+...|++.|+.++|.+.|..+.+. -..+...|..|...+++.|++++|.+.++.|.... |+...| ..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY--nt 205 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY--AA 205 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH--HH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH--HH
Confidence 37888999999999999999999876542 34577899999999999999999999999998776 444554 77
Q ss_pred HHHHHHHhCCh-hHHHHHHHHHHHHHhhhhcccchhH
Q psy6603 631 CALAYQRLGRW-GDTLKKCHEVDRHFSEIIEDQFDFH 666 (724)
Q Consensus 631 la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~ 666 (724)
+..++++.|+. ++|.++|+++.+. ...||.+-+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k--G~~PD~vtY~ 240 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE--GLKLQALFTA 240 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH--TCCSHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc--CCCCChhhcc
Confidence 88899999985 7889999999865 6667754443
No 249
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.01 E-value=7.5e-05 Score=71.52 Aligned_cols=253 Identities=13% Similarity=0.109 Sum_probs=141.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCC
Q psy6603 359 HYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANL 438 (724)
Q Consensus 359 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~ 438 (724)
..+|.++...+...+|++.|-++ +++..+.....+..+.|.+++=+.++..+.+. ..++.+-..+..+|.+.++
T Consensus 58 s~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 58 SQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNR 131 (624)
T ss_dssp SSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCS
T ss_pred HHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCc
Confidence 36677777777777777666442 23333344455556677777777777776654 3445566667777777776
Q ss_pred HHHHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhh------hHhhhhhchHHHHHHHHHH
Q psy6603 439 IKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVD------RKCYEHKQYKNGLKFAKQI 512 (724)
Q Consensus 439 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~A~~~~~~~ 512 (724)
..+-.+.+.. |+ ...+ ..+|.-.+..|.|+.|.-+|..+. ..+...++|..|+...+
T Consensus 132 L~elEefl~~-----~N-~A~i---------q~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr-- 194 (624)
T 3lvg_A 132 LAELEEFING-----PN-NAHI---------QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR-- 194 (624)
T ss_dssp SSTTTSTTSC-----CS-SSCT---------HHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT--
T ss_pred HHHHHHHHcC-----CC-cccH---------HHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH--
Confidence 5443322211 11 1111 125777777777777766655442 22223334433332211
Q ss_pred hcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHH
Q psy6603 513 LTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQI 592 (724)
Q Consensus 513 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 592 (724)
-.+++.+|-....++...+++.-|.-+--..+- .|+ -+-.+...|...|.|++=+..++.++.+..-+...
T Consensus 195 -----KAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-had---eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGm 265 (624)
T 3lvg_A 195 -----KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HAD---ELEELINYYQDRGYFEELITMLEAALGLERAHMGM 265 (624)
T ss_dssp -----TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSS---CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH
T ss_pred -----hcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHH---HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH
Confidence 111222444444444444444333332222221 111 12224456778899999999999999999899999
Q ss_pred HHHHHHHHHHhhhHhhHHHHHHHHH---------hhhhhhhhhhhhhHHHHHHHhCChhHHHH
Q psy6603 593 MRDLSLLQIQMRDLEGYREGVSAME---------NLNEMQCMWFQTECALAYQRLGRWGDTLK 646 (724)
Q Consensus 593 ~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 646 (724)
...||.+|.+- +.++..+.++... +.......| ..+...|..-.+|+.|..
T Consensus 266 FTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW--~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLW--AELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCH--HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhH--HHHHHHHhcchhHHHHHH
Confidence 99999888766 3344444444322 222333566 667778888888888765
No 250
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.80 E-value=0.21 Score=54.96 Aligned_cols=44 Identities=11% Similarity=-0.084 Sum_probs=24.4
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHH
Q psy6603 73 RSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121 (724)
Q Consensus 73 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 121 (724)
...|++++|.+..+ ..+++..|..+|..+.+.++++.|+.+|.+
T Consensus 663 l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 663 LKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556665555432 224455666666666666666666665544
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.71 E-value=0.3 Score=43.32 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=43.8
Q ss_pred HhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchh
Q psy6603 72 QRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRA 131 (724)
Q Consensus 72 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 131 (724)
..+.|+.++|+......++.+|.+......+..+++-.|+++.|.+-++.+.+++|....
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 455677777777777777777777777777777777777777777777777777776543
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=1.6 Score=43.26 Aligned_cols=199 Identities=9% Similarity=0.021 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHH----HHHcCC
Q psy6603 369 GDTMKALNYINAAIDH------TPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKY----MLRANL 438 (724)
Q Consensus 369 ~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~----~~~~g~ 438 (724)
|+++.|++.+-...+. .+....+...+..++...|+++...+.+.-.......-......+... ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6777887776443322 234567788888999999999988777765554433222221122111 111222
Q ss_pred HHH--HHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCC
Q psy6603 439 IKE--AEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNP 516 (724)
Q Consensus 439 ~~~--A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 516 (724)
.+. -+........ .......-.....-....++.++...|++.+|.+.+..+....+..-+
T Consensus 110 ~d~~~~~~~i~~l~~--vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~--------------- 172 (445)
T 4b4t_P 110 LDLNTRISVIETIRV--VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME--------------- 172 (445)
T ss_dssp THHHHHHHHHHCCSS--SSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC---------------
T ss_pred hhHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc---------------
Confidence 111 1111111110 010111111112223344788888888888888877766433322111
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhh---cCCCccc----hHHHHHHHHhccccHHHHHHHHHHHhhh
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR---NDLKSHV----CWHVYGLLQRSDKKYDEAIKCYRNALKW 585 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~al~~ 585 (724)
...-.+.+.....++...+++.+|...++++.. ..+.++. .+...|.++...++|.+|-.+|..++..
T Consensus 173 -~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 173 -MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp -HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 112345777888899999999999999998743 2333332 6677889999999999999999999873
No 253
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.06 E-value=1.8e-05 Score=75.72 Aligned_cols=253 Identities=14% Similarity=0.156 Sum_probs=121.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccchhhhhhHHHHHHHcCCHH
Q psy6603 361 LAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIK 440 (724)
Q Consensus 361 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~ 440 (724)
........+++.-|.-+--..+-. |+.. -.+...|...|-+++-+..++.++.+.....-+...+|..|.+- +.+
T Consensus 205 V~~ACvd~~EfrLAqicGLniIvh-adeL---~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~Pe 279 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVVH-ADEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQ 279 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHCC-SSCC---SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTT
T ss_pred HHHHHhCchHHHHHHHhcchhccc-HHHH---HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHH
Confidence 333445556666555544443322 2211 12234466777777777888887777777777777777776643 455
Q ss_pred HHHHHHHHhhhcccCccCChhHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHHHhcCCCCCc
Q psy6603 441 EAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAE 520 (724)
Q Consensus 441 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 520 (724)
+-.+.++..... .+....+......+.+.++..+|..-.+++.|....-+-....++.+.|++.+. + -.
T Consensus 280 KlmEHlklf~sr-iNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~------K----Va 348 (624)
T 3lvg_A 280 KMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT------K----VA 348 (624)
T ss_dssp HHHHHHTTSSSS-SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG------G----CS
T ss_pred HHHHHHHHHHHh-ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH------H----cc
Confidence 555555443321 111111111111233344677777777777775543322222222222222111 0 01
Q ss_pred hhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhh-----------hcccc
Q psy6603 521 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK-----------WEHDN 589 (724)
Q Consensus 521 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----------~~p~~ 589 (724)
+.+.++. |+..| ++..|. .+..+-.++...=+....+..|++.=. .+.++
T Consensus 349 N~EiyYK-------------Ai~FY---L~e~P~---lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~ 409 (624)
T 3lvg_A 349 NVELYYR-------------AIQFY---LEFKPL---LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNN 409 (624)
T ss_dssp CSHHHHH-------------HHHHH---TTSCCT---TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCC
T ss_pred hHHHHHH-------------HHHHH---HHhChH---HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhH
Confidence 1112221 11111 122222 122222222222233333333333221 13456
Q ss_pred HHHHHHHHHHHHHhhhHhhHHHHHHH---------HHhhhhhhhhhhhhhHHHHHHHhCChhHHHHHH
Q psy6603 590 IQIMRDLSLLQIQMRDLEGYREGVSA---------MENLNEMQCMWFQTECALAYQRLGRWGDTLKKC 648 (724)
Q Consensus 590 ~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 648 (724)
..+--.+-.++...+|++..+..++. +.++....-..+..--|.+|.+.++|.+|+.++
T Consensus 410 ~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~ 477 (624)
T 3lvg_A 410 KSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELC 477 (624)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCS
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 66777777888888888877665543 223333333333344456778888888888765
No 254
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.86 E-value=0.11 Score=51.92 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=74.1
Q ss_pred HHHhhhhHhhhcCChHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHh
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 603 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 603 (724)
.+..+|++......+..|..+|.+|+.+.|++...++.+|.+....|+.-+|+-+|.+++......+.+..+|..++...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999998888999999998876653
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.73 E-value=1.4 Score=39.20 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=83.3
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHH
Q psy6603 36 LTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGY 115 (724)
Q Consensus 36 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A 115 (724)
..+++.|+.++|+......++.+|.+......+-..++-.|+++.|.+.++.+.+++|........+..+ -.|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHH
Confidence 3467889999999999999999999999999999999999999999999999999999875432111111 011
Q ss_pred HHHHHHHHHh--CC---CchhHHH---HHHHHHHHcCCHHHHHHHHHHHHHhhccCC
Q psy6603 116 RETRYQLFML--RP---TQRASWI---GFAMAYHLLHDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 116 ~~~~~~~l~~--~p---~~~~~~~---~la~~~~~~g~~~~A~~~~~~~~~~~~~~p 164 (724)
...=.+++.- .| ..+..|. .-+......|+.++|..+-..+.+..+..+
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 1111122221 12 2333333 335566677999999988887776654433
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.2 Score=49.50 Aligned_cols=184 Identities=11% Similarity=0.070 Sum_probs=82.4
Q ss_pred HHHHhhcCCHHHHHHHHHHHHh---h--------CCCcHHHHHHHHHHHHHhcchHHHH----------HHHHHHHH---
Q psy6603 69 GLLQRSDKKYDEAIKCYRNALK---W--------EHDNIQIMRDLSLLQIQMRDLEGYR----------ETRYQLFM--- 124 (724)
Q Consensus 69 g~~~~~~g~~~~A~~~~~~a~~---~--------~p~~~~~~~~la~~~~~~~~~~~A~----------~~~~~~l~--- 124 (724)
-..+...+++++|..+-...+. + ++=...+|+..+.++...|+..... ..+-.+++
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3345567889998887765541 1 2334557777777777777665432 22222222
Q ss_pred --hCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q psy6603 125 --LRPT-QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI 201 (724)
Q Consensus 125 --~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 201 (724)
.++. ....+..+-+.|...+.++.|..+..+.. ++............++++|.++.-.++|.+|.+.+..++...
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2222 45677888999999999999988777642 221111123456778889999999999999999999999988
Q ss_pred ccHhh-------HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCc---HHHHHHHHHHhccCChHHHHHH
Q psy6603 202 HDKLT-------VEETYGALKLKLGQYNEAMKHYESLIERNQEN---TLYYNKLVEAKQLTNNDDIFQL 260 (724)
Q Consensus 202 p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~a~~~ 260 (724)
|.+.. ++..+.-+-.-+|+..+- ..|. .|.. ...+..+..+++.|+...-...
T Consensus 301 p~~~~a~gfr~~a~K~lI~V~LLlG~iP~r-~lf~-----q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~ 363 (523)
T 4b4t_S 301 PHNSKSLGFLQQSNKLHCCIQLLMGDIPEL-SFFH-----QSNMQKSLLPYYHLTKAVKLGDLKKFTST 363 (523)
T ss_dssp SCSSSCSHHHHHHHHHHHHHHHHHTCCCCH-HHHT-----TTSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcchhhhhHHHHHHHHHHhHHhhcCCCCCh-HHhh-----chhHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 75432 222333333345765531 1111 1222 2336667777777876544333
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.64 E-value=0.54 Score=45.74 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=74.3
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhCCCc----------------------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC
Q psy6603 70 LLQRSDKKYDEAIKCYRNALKWEHDN----------------------IQIMRDLSLLQIQMRDLEGYRETRYQLFMLRP 127 (724)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~a~~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p 127 (724)
......|+.+.|...+.+|+.+.... ..+...++..+...|++.+++..+..++..+|
T Consensus 123 ~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P 202 (388)
T 2ff4_A 123 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP 202 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33344688888999999988774211 11344567788899999999999999999999
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 128 TQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 128 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
-+..++..+..++...|+..+|+..|+.+.+.+
T Consensus 203 ~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 203 YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876654
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.61 E-value=4.9 Score=41.57 Aligned_cols=124 Identities=13% Similarity=0.045 Sum_probs=70.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHc
Q psy6603 139 AYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKL 218 (724)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 218 (724)
......+.+.|...+....+....++ .........++..+...+...++...+.+.....+++.. ...++....+.
T Consensus 223 ~rlar~d~~~A~~~~~~~~~~~~~~~---~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~ 298 (618)
T 1qsa_A 223 ASVARQDAENARLMIPSLAQAQQLNE---DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGT 298 (618)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHhhhhccCCCH---HHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHC
Confidence 33444577778777776654432222 122223333333334445355666666665544333332 33444445567
Q ss_pred CChHHHHHHHHHHHHHcCCcHHHHHHHHHH-hccCChHHHHHHHHHHHH
Q psy6603 219 GQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYIS 266 (724)
Q Consensus 219 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~a~~~~~~~~~ 266 (724)
|+++.|...|..+-...+......+-++.. ...|+.++|..+|..+..
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888888877655434445555566666 456888888888888764
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.59 E-value=2.4 Score=39.14 Aligned_cols=129 Identities=6% Similarity=-0.013 Sum_probs=68.2
Q ss_pred HHHHhhcchhhhhhhhhhhhhHhhhhhchHHHHHHHHH----HhcCCCCCchhHHHHhhhhHhhhcCCh--HHHHHHHHH
Q psy6603 474 LAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQ----ILTNPKYAEHGETLAMKGLTLNCLGRK--EEAYEYVRR 547 (724)
Q Consensus 474 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~ 547 (724)
......|+|=||.+.++.+...+...+++++|+.++.. +........-.+.-..+..+|.+.+.. ++.+.-+.+
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33455688899999999998888888999999887532 112211111222222333444433321 222333333
Q ss_pred hhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHH
Q psy6603 548 GLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRE 611 (724)
Q Consensus 548 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~ 611 (724)
.+..-|..... +..-.++|+++-.+.-...-.++..+..+|..+...|++..|..
T Consensus 101 l~~~~p~~~~~---------r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 101 LIAELDPSEPN---------LKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHTTCCTTCTT---------HHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHCCCCCch---------HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 33332221111 01112334444333322233578899999999998888766554
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.37 E-value=3.3 Score=38.53 Aligned_cols=129 Identities=9% Similarity=0.062 Sum_probs=67.0
Q ss_pred HHHhhcch---hhhhhhhhhhhhHhhhhhchHHHHHHHHH----HhcCCCCCchhHHHHhhhhHhhhcCC--hHHHHHHH
Q psy6603 475 AYQRLGRW---GDTLKKCHEVDRKCYEHKQYKNGLKFAKQ----ILTNPKYAEHGETLAMKGLTLNCLGR--KEEAYEYV 545 (724)
Q Consensus 475 ~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~ 545 (724)
.....|+| =||-+.++.+...+...++|++|+.++-. +........-.+.-..+..+|.+.+- -++...-+
T Consensus 21 ~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34557888 88999999888888888999999886522 22221111122233333344444331 12222223
Q ss_pred HHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHHHHHhhhHhhHHHH
Q psy6603 546 RRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREG 612 (724)
Q Consensus 546 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~a~~~ 612 (724)
.+.+..-|..... +..=.++|+++=.+.=...-.+++.+..+|..+++.+++..|...
T Consensus 101 ~~L~~~~~~~~p~---------r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 101 LGCLRLFQPGEPV---------RKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHTTSCTTCHH---------HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCCCCcH---------HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 3333333322111 011123444443332222335678888888888888876665543
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.21 E-value=1.7 Score=49.32 Aligned_cols=145 Identities=12% Similarity=-0.017 Sum_probs=99.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHhhC--------------------
Q psy6603 33 MKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE-------------------- 92 (724)
Q Consensus 33 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~-------------------- 92 (724)
.+...+...|.++-|.++ +...|.++...+.+|.++...|++++|..+|+++-.--
T Consensus 817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 344556667777666543 34556777778999999999999999999998873210
Q ss_pred ---CCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCc-h----hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCC
Q psy6603 93 ---HDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQ-R----ASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTN 164 (724)
Q Consensus 93 ---p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p 164 (724)
...+..|..+..++.+.+.++.+++..+.+++..+.+ . ..|..+-..+...|+|++|...+...... .
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~----~ 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT----P 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS----S
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH----H
Confidence 0113456677788889999999999999999876542 2 25777888899999999998766443211 1
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHH
Q psy6603 165 SYDFEHSELLLYQSMVIQDSGDLEE 189 (724)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~ 189 (724)
.....+..+...++..|..+.
T Consensus 969 ----~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 ----LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp ----SCHHHHHHHHHHHHHHCCHHH
T ss_pred ----HHHHHHHHHHHHHHhCCChhh
Confidence 133455555566666665443
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.37 Score=47.72 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcc--H----h
Q psy6603 132 SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHD--K----L 205 (724)
Q Consensus 132 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~--~----~ 205 (724)
++..+|..+...|++++|.+.|.++........ ...+.++....++...+++..+...+.++...... + .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~----~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG----AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC----SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 444455555555555555555555444332211 24445555555555555555555555554433211 1 1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy6603 206 TVEETYGALKLKLGQYNEAMKHYESLIER 234 (724)
Q Consensus 206 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (724)
......|.++...++|.+|...|-.++..
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 12233344455556666666666555443
No 263
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.00 E-value=0.31 Score=48.68 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=65.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc
Q psy6603 64 CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLL 143 (724)
Q Consensus 64 ~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 143 (724)
++..+|.+......+..|..+|.+|..+.|++...+..||.+....|+.-+|+-+|.+++......+.+..++...+...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 56677888888888888888888888888888888888888888888888888888888887777778888887776543
No 264
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.67 E-value=0.86 Score=44.31 Aligned_cols=90 Identities=10% Similarity=-0.056 Sum_probs=72.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCc--------hh--------------HHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q psy6603 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKS--------HV--------------CWHVYGLLQRSDKKYDEAIKCYRNALKW 91 (724)
Q Consensus 34 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~--------~~--------------~~~~lg~~~~~~g~~~~A~~~~~~a~~~ 91 (724)
.|......|+.+.|...+.+++.+.... .. +...++..+...|++.+|+..+..++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3444455789999999999999763211 11 1233566777899999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q psy6603 92 EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLF 123 (724)
Q Consensus 92 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 123 (724)
+|-+..++..+..++...|+..+|+..|++.-
T Consensus 201 ~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999987654
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.25 Score=48.95 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=44.7
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhcc---ccHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhh-----hhhhhh
Q psy6603 558 CWHVYGLLQRSDKKYDEAIKCYRNALKWEH---DNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQ-----CMWFQT 629 (724)
Q Consensus 558 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~ 629 (724)
++..+|..|...|++++|.++|.++..... .-.+.+..+..+....+||..+...+.++....... ..-+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 344444444444444444444444443221 122444444444444455544444444443322111 111113
Q ss_pred hHHHHHHHhCChhHHHHHHHHHHHHH
Q psy6603 630 ECALAYQRLGRWGDTLKKCHEVDRHF 655 (724)
Q Consensus 630 ~la~~~~~~g~~~~A~~~~~~~~~~~ 655 (724)
..|.++...++|.+|-..|-++...+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 34445566777777777776665443
No 266
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.44 E-value=1.5 Score=49.93 Aligned_cols=123 Identities=7% Similarity=-0.029 Sum_probs=85.7
Q ss_pred chhHHHHhhhhHhhhcCChHHHHHHHHHhhhcC-C--------------------C--ccchHHHHHHHHhccccHHHHH
Q psy6603 520 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRND-L--------------------K--SHVCWHVYGLLQRSDKKYDEAI 576 (724)
Q Consensus 520 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p--------------------~--~~~~~~~l~~~~~~~~~~~~A~ 576 (724)
.++..-+.+|.++...|++++|..+|+++-.-- + . .+..|..+..++.+.|.++.++
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 344456999999999999999999999884310 0 0 1124566778888999999999
Q ss_pred HHHHHHhhhcc-ccH----HHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhCChhHH
Q psy6603 577 KCYRNALKWEH-DNI----QIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDT 644 (724)
Q Consensus 577 ~~~~~al~~~p-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 644 (724)
+.-+.|++..+ ++. ..+.++-..++..|+|++|..++..+....-..++. ..+....+..|..+.=
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cL--r~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCL--LDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHH--HHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHH--HHHHHHHHhCCChhhh
Confidence 99999998654 332 267778888999999999988886554222222333 4455555666654443
No 267
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.09 E-value=16 Score=37.84 Aligned_cols=24 Identities=17% Similarity=-0.017 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCC
Q psy6603 692 PFYYTAARCAIQVYLRLHDRPCTL 715 (724)
Q Consensus 692 ~~~~~~~~~~~~~y~~~~~~~~~~ 715 (724)
..|+..+.....+|-.+-+.+.+.
T Consensus 585 r~YV~~Vl~~~~~Y~~~~~~~~~~ 608 (618)
T 1qsa_A 585 RGYVKNVLAYDAYYRYFMGDKPTL 608 (618)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC
Confidence 378888899999998887766553
No 268
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.96 E-value=1.3 Score=43.88 Aligned_cols=150 Identities=12% Similarity=0.049 Sum_probs=63.4
Q ss_pred HHhccCCHHHHHHHHHHHHH-----------cCCCchhHHHHHHHHHhhcCCHHHHH----------HHHHHHHh-----
Q psy6603 37 TLNCLGRKEEAYEYVRRGLR-----------NDLKSHVCWHVYGLLQRSDKKYDEAI----------KCYRNALK----- 90 (724)
Q Consensus 37 ~~~~~g~~~~A~~~~~~~l~-----------~~p~~~~~~~~lg~~~~~~g~~~~A~----------~~~~~a~~----- 90 (724)
.++..+++++|.++-...+. .++-...+|+.++.++...|+..... ..+-.+++
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 45667888888887765541 24445666888888888777766532 22222222
Q ss_pred hCCC-cHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCc-------hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcc
Q psy6603 91 WEHD-NIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQ-------RASWIGFAMAYHLLHDFDMACNILEAFRKTQQV 162 (724)
Q Consensus 91 ~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 162 (724)
.++. ....+..+-..|...+.++.|..+..+.. .|.. ...++.+|+++...++|.+|...+..+.+..+.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 2332 24577788899999999999999998885 3321 345677899999999999999888776554432
Q ss_pred CCCCChhhHHHHHHHHHHHHHcCCHH
Q psy6603 163 TNSYDFEHSELLLYQSMVIQDSGDLE 188 (724)
Q Consensus 163 ~p~~~~~~~~~~~~~~~~~~~~g~~~ 188 (724)
..........++-.+..+-.-.|+..
T Consensus 303 ~~~a~gfr~~a~K~lI~V~LLlG~iP 328 (523)
T 4b4t_S 303 NSKSLGFLQQSNKLHCCIQLLMGDIP 328 (523)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHTCCC
T ss_pred chhhhhHHHHHHHHHHhHHhhcCCCC
Confidence 22111122333333333333356644
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.29 E-value=11 Score=31.90 Aligned_cols=73 Identities=7% Similarity=-0.083 Sum_probs=54.0
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc--CCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccH
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN--DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 590 (724)
++|....+|...+..+ ..+...++.++|.-+... .-..+..|...|..+...|++.+|.++|+..++..-...
T Consensus 75 ND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 75 NDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 5555556777777665 234466888888877765 444555777788999999999999999999999765443
No 270
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=78.91 E-value=65 Score=33.49 Aligned_cols=39 Identities=13% Similarity=-0.060 Sum_probs=24.5
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6603 375 LNYINAAI-DHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA 415 (724)
Q Consensus 375 ~~~~~~~l-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 415 (724)
+.-+++.+ +..|..-.. ....++.-.|+|+.|+.++-+.
T Consensus 281 L~~LQ~~I~~yGe~~F~~--lYf~vLlLtgqFE~AI~~L~~~ 320 (661)
T 2qx5_A 281 LEDFQNIIISYGPSRFSN--YYLQTLLLSGLYGLAIDYTYTF 320 (661)
T ss_dssp HHHHHHHHHHHCGGGGTT--CHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhh--HHHHHHHHHhhHHHHHHHHHhc
Confidence 44455544 334443222 4566778899999999988754
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.24 E-value=41 Score=28.40 Aligned_cols=85 Identities=14% Similarity=0.033 Sum_probs=61.0
Q ss_pred HHHHHHHHhhccCCC--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh--ccHhhHHHHHHHHHHHcCChHHHHH
Q psy6603 151 NILEAFRKTQQVTNS--YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI--HDKLTVEETYGALKLKLGQYNEAMK 226 (724)
Q Consensus 151 ~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~ 226 (724)
.+++++.+.+...+. .++....+|+..+..+ ..+...++..+|..+.... ...+..|...|..+...|++.+|..
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 567777777765554 3455666777666554 2344678888888776654 3446678888899999999999999
Q ss_pred HHHHHHHHcC
Q psy6603 227 HYESLIERNQ 236 (724)
Q Consensus 227 ~~~~~~~~~p 236 (724)
+|+..++..-
T Consensus 137 Vy~~GI~~~A 146 (202)
T 3esl_A 137 LLELGAENNC 146 (202)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999998753
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=72.98 E-value=9.9 Score=30.46 Aligned_cols=69 Identities=3% Similarity=-0.086 Sum_probs=48.3
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc--CCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccHH
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN--DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 591 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 591 (724)
++|....+|...+... +++.++|.-+... .-..+..|...|..+...|++.+|.++|+..++......+
T Consensus 66 nD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 66 NDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp TCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4444445666665543 3377777777665 4445557777889999999999999999999997655543
No 273
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.73 E-value=53 Score=36.33 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=37.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy6603 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNAL 89 (724)
Q Consensus 34 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~ 89 (724)
+...+...|.++-|.+ .+..-|.++..-+.+|.++...|++++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4455566676665433 445566677777888999999999999999988764
No 274
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=71.21 E-value=26 Score=34.46 Aligned_cols=147 Identities=12% Similarity=0.056 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHHHhCCC-------c-----h----hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCC----CChhh
Q psy6603 111 DLEGYRETRYQLFMLRPT-------Q-----R----ASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNS----YDFEH 170 (724)
Q Consensus 111 ~~~~A~~~~~~~l~~~p~-------~-----~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~ 170 (724)
..+++...+.++...--. . . .....+-.+|++.|+..-+..++..+.... .-|. .....
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~-~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKS-MLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHC-CCSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC-CCcChhhCCccce
Confidence 356666777777765211 1 1 123445688999999999998887765543 2112 12345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhh-hccHh----------hHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCcH
Q psy6603 171 SELLLYQSMVIQDSGDLEEAVKHLDRFKEQ-IHDKL----------TVEETYGALKLKLGQYNEAMKHYESLIERNQENT 239 (724)
Q Consensus 171 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 239 (724)
....+++|..+...++|.+|.+.+..|+.. .|... .++..+.-+-.-+|+...-.- +++-. .|.-.
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~l-l~k~~--~~~L~ 296 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGP-LRPFL--SQETI 296 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHH-HGGGS--CHHHH
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHH-Hcccc--hHHHH
Confidence 677889999999999999999999999998 77541 133334444455676543221 21100 02222
Q ss_pred HHHHHHHHHhccCChHHHHHHH
Q psy6603 240 LYYNKLVEAKQLTNNDDIFQLL 261 (724)
Q Consensus 240 ~~~~~l~~~~~~~~~~~a~~~~ 261 (724)
..+..+..+.+.|+...-.+.+
T Consensus 297 ~~y~~L~~AVr~Gdl~~F~~~L 318 (455)
T 3t5v_B 297 DNWSVLYKHVRYGNIQGVSLWL 318 (455)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 2356677777888765444433
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=68.75 E-value=13 Score=30.33 Aligned_cols=68 Identities=4% Similarity=0.023 Sum_probs=47.8
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc--CCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccH
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN--DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 590 (724)
++|....+|...+... +++.++|.-+... .-..+..|...|..+...|++.+|.++|+..++......
T Consensus 61 nD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp TCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4444455666666553 3366677766654 444555777788999999999999999999999765444
No 276
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=68.22 E-value=61 Score=28.26 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHcC
Q psy6603 209 ETYGALKLKLGQYNEAMKHYESLIERNQ 236 (724)
Q Consensus 209 ~~la~~~~~~g~~~~A~~~~~~~~~~~p 236 (724)
..+|.+..+.++|++.....+++.+.++
T Consensus 12 v~~AklaeqaeRyddM~~~mk~v~~~~~ 39 (236)
T 3iqu_A 12 IQKAKLAEQAERYEDMAAFMKGAVEKGE 39 (236)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 3444445555555555555555554443
No 277
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=65.34 E-value=74 Score=28.18 Aligned_cols=172 Identities=14% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCC-cHHHHHHHHHHhcc--CChHHHHHHHHHHHHhCCCCCccccccccccCc
Q psy6603 208 EETYGALKLKLGQYNEAMKHYESLIERNQE-NTLYYNKLVEAKQL--TNNDDIFQLLTHYISKYPKATVPKRLSLNYVSG 284 (724)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (724)
+..++.+..+.++|++.+...+++.+.++. +.+-...+...++. |....+...+..+................-...
T Consensus 34 lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i~~yr 113 (261)
T 3ubw_A 34 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYR 113 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHhhhhcCCchhhhhhHHhhhchhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCchhHHHHHHHHHHHH
Q psy6603 285 DQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQH 364 (724)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 364 (724)
.....-+..+ +..++......+-. ....+...+..+-..|..
T Consensus 114 ~kIe~EL~~i----------------------------C~dil~lld~~Lip----------~a~~~EskVFY~KMKGDY 155 (261)
T 3ubw_A 114 QMVETELKLI----------------------------CCDILDVLDKHLIP----------AANTGESKVFYYKMKGDY 155 (261)
T ss_dssp HHHHHHHHHH----------------------------HHHHHHHHHHTHHH----------HCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HHHHHHHHHHhccc----------cCCcHHHHHHHHHhhccH
Q ss_pred HHhcCCH----------HHHHHHHHHHHhc--------CCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHc
Q psy6603 365 YDHLGDT----------MKALNYINAAIDH--------TPTLIELFVTKGRIYKH-AGDVLEAYKWLDEAQS 417 (724)
Q Consensus 365 ~~~~~~~----------~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~ 417 (724)
|...-.+ +.|...|+.|.++ +|-......+.+..|.. .+++++|...-++++.
T Consensus 156 yRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 156 HRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 278
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=63.89 E-value=6.2 Score=27.74 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=10.7
Q ss_pred ccccHHHHHHHHHHHhh
Q psy6603 568 SDKKYDEAIKCYRNALK 584 (724)
Q Consensus 568 ~~~~~~~A~~~~~~al~ 584 (724)
+.|++++|+.+|..+++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 46666666666666655
No 279
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=63.24 E-value=14 Score=25.08 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=17.1
Q ss_pred HHHHHhccccHHHHHHHHHHHhhhccccHH
Q psy6603 562 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 591 (724)
Q Consensus 562 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 591 (724)
+|..+...|++++|..+|-+|+...|....
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 455555555566666666666665555443
No 280
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=62.40 E-value=22 Score=24.13 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=21.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHH
Q psy6603 66 HVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 97 (724)
Q Consensus 66 ~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 97 (724)
..+|..+...|++++|..+|-+|+...|.-.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 34577777777777777777777777666443
No 281
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=61.77 E-value=7.1 Score=27.49 Aligned_cols=31 Identities=26% Similarity=0.518 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhh
Q psy6603 539 EEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584 (724)
Q Consensus 539 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 584 (724)
++|+.+.++|++.| +.|++++|+.+|..+++
T Consensus 9 ~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKAD---------------KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHH
Confidence 35666666665543 46666666666666655
No 282
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.50 E-value=1.8e+02 Score=32.05 Aligned_cols=89 Identities=6% Similarity=-0.017 Sum_probs=64.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCC------------------
Q psy6603 68 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFML-RPT------------------ 128 (724)
Q Consensus 68 lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~------------------ 128 (724)
+...+...|.++-|. ..+...|.++..-+.+|.++...|++++|..+|+++-.- .+.
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 555666678887654 356778888888899999999999999999999866421 100
Q ss_pred ----chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 129 ----QRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 129 ----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
....|...+.++...+-++.++...+.++...
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 11245666777777888888887777766654
No 283
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=60.36 E-value=17 Score=31.24 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=48.6
Q ss_pred CCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhc--CCCccchHHHHHHHHhccccHHHHHHHHHHHhhhccccH
Q psy6603 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRN--DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 517 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 590 (724)
+++....+|...+.. .+++..+|.-+... .-..+..|...|..+...|++.+|.++|+..++..-...
T Consensus 115 nD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 115 DDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp TCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 444455566666653 24666777766655 444555777788999999999999999999999765543
No 284
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=57.35 E-value=1e+02 Score=27.14 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHcC
Q psy6603 209 ETYGALKLKLGQYNEAMKHYESLIERNQ 236 (724)
Q Consensus 209 ~~la~~~~~~g~~~~A~~~~~~~~~~~p 236 (724)
..++.+..+.++|++.....+++...++
T Consensus 8 v~~AklaeqaeRyddM~~~Mk~v~~~~~ 35 (248)
T 3uzd_A 8 VQKARLAEQAERYDDMAAAMKNVTELNE 35 (248)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3444555555555555555555555443
No 285
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=56.84 E-value=1.1e+02 Score=27.24 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q psy6603 172 ELLLYQSMVIQDSGDLEEAVKHLDRFKEQI 201 (724)
Q Consensus 172 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 201 (724)
+-+..++.+..+.++|++.+.+.+++.+.+
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~ 58 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEAR 58 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 344455666666666666666666666543
No 286
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=56.49 E-value=53 Score=23.63 Aligned_cols=32 Identities=22% Similarity=0.623 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhh
Q psy6603 538 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584 (724)
Q Consensus 538 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 584 (724)
.+.|+..+.+|++.+ ..|+|++|+.+|..+++
T Consensus 12 l~~Ai~lv~~Ave~D---------------~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 12 STAAVAVLKRAVELD---------------AESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HhCCHHHHHHHHHHHHH
Confidence 456666666666553 34555555555555554
No 287
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=56.05 E-value=19 Score=24.80 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=27.2
Q ss_pred hhHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc
Q psy6603 629 TECALAYQRLGRWGDTLKKCHEVDRHFSEIIED 661 (724)
Q Consensus 629 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 661 (724)
..+|+-|...|+|+.|+.+|+.+++........
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~ 48 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMNKYLYS 48 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 568889999999999999999999876654444
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.47 E-value=90 Score=25.39 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhccCCC--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh--ccHhhHHHHHHHHHHHcCChHHHH
Q psy6603 150 CNILEAFRKTQQVTNS--YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI--HDKLTVEETYGALKLKLGQYNEAM 225 (724)
Q Consensus 150 ~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~ 225 (724)
..+++++.+.+...+. .++....+|+..+... ++ +..+|..+.... ...+..|...|..+...|++.+|.
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~ 116 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKAD 116 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 3345666666655444 3445566666555542 33 556666665543 445667888899999999999999
Q ss_pred HHHHHHHHHcCCc
Q psy6603 226 KHYESLIERNQEN 238 (724)
Q Consensus 226 ~~~~~~~~~~p~~ 238 (724)
.+|...++.....
T Consensus 117 ~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 117 AIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHTTCBS
T ss_pred HHHHHHHHcCCCc
Confidence 9999999876433
No 289
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=53.35 E-value=57 Score=23.04 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=25.4
Q ss_pred hHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc
Q psy6603 630 ECALAYQRLGRWGDTLKKCHEVDRHFSEIIED 661 (724)
Q Consensus 630 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 661 (724)
..|.-.-..|++++|+..|..+++.|-.....
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~ 52 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGIDLLLQVLKG 52 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 34556678899999999999999888766544
No 290
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=51.54 E-value=41 Score=28.73 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Q psy6603 350 PASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLI 389 (724)
Q Consensus 350 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 389 (724)
|....+.-.|.+|..+...++|.+|.+.+..|+...|...
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 4455555778899999999999999999999998887643
No 291
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=50.72 E-value=1.3e+02 Score=26.61 Aligned_cols=28 Identities=14% Similarity=0.385 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhh
Q psy6603 174 LLYQSMVIQDSGDLEEAVKHLDRFKEQI 201 (724)
Q Consensus 174 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 201 (724)
+..++.+..+.++|++.+.+.+++...+
T Consensus 11 ~v~~AkLaeqaeRyddm~~~mk~v~~~~ 38 (260)
T 1o9d_A 11 NVYMAKLAEQAERYEEMVEFMEKVSNSL 38 (260)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC
Confidence 3344555555555555555555554433
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=50.35 E-value=85 Score=25.41 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=29.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCc---hhHHHH------HHHHHhhcCCHHHHHHHHHHHHh
Q psy6603 32 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKS---HVCWHV------YGLLQRSDKKYDEAIKCYRNALK 90 (724)
Q Consensus 32 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~------lg~~~~~~g~~~~A~~~~~~a~~ 90 (724)
+..|..++..|+|=+|-+.++.+-...+.. ...|.. .|......|+..-|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445555666666666666666665544332 111111 12233445555555555555544
No 293
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=49.93 E-value=69 Score=23.07 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=23.8
Q ss_pred hhHHHHHHHhCChhHHHHHHHHHHHHHhhhhcc
Q psy6603 629 TECALAYQRLGRWGDTLKKCHEVDRHFSEIIED 661 (724)
Q Consensus 629 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 661 (724)
.+.|..+...|+. |...+.+++.......++
T Consensus 45 ~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~~ 75 (94)
T 2cwy_A 45 LAAALHQRRLGRP--GLRNLRKAEARLEGLPCP 75 (94)
T ss_dssp HHHHHHHHHTTCC--CHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHcCcH--HHHHHHHHHHHHHhCCCc
Confidence 4556677788988 999999999887766544
No 294
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=49.08 E-value=38 Score=33.33 Aligned_cols=66 Identities=5% Similarity=-0.107 Sum_probs=50.4
Q ss_pred HHHhhhhHhhhcCChHHHHHHHHHhhhc--------CCCcc--chHHHHHHHHhccccHHHHHHHHHHHhhh-cccc
Q psy6603 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRN--------DLKSH--VCWHVYGLLQRSDKKYDEAIKCYRNALKW-EHDN 589 (724)
Q Consensus 524 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~ 589 (724)
..+.+-.+|.+.|+..-+...++..-.. .|.+. ...+.+|.++...++|.+|.+.+..|+.. .|.+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3455667899999999888888644322 22222 27788999999999999999999999998 7764
No 295
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=47.68 E-value=26 Score=25.22 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=22.5
Q ss_pred HHHHHHhccccHHHHHHHHHHHhhhccccHHHH
Q psy6603 561 VYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIM 593 (724)
Q Consensus 561 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 593 (724)
.+|..+...|+++.|+.+|-+|+...|......
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 367777777777777777777777776654433
No 296
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.35 E-value=71 Score=27.14 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=26.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHc
Q psy6603 179 MVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKL 218 (724)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 218 (724)
.++.+.|.+++|.+.+++....+|.+......|..+-.+.
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~K 161 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhcc
Confidence 3566778888888888888776666555555555544433
No 297
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=46.35 E-value=48 Score=23.23 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=23.6
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhh
Q psy6603 631 CALAYQRLGRWGDTLKKCHEVDRHFSEII 659 (724)
Q Consensus 631 la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 659 (724)
.|.-.-+.|++++|+..|...++.+....
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~aie~l~~al 53 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAIEVLAQLV 53 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 45567888999999999999998877654
No 298
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=45.61 E-value=1.1e+02 Score=24.04 Aligned_cols=121 Identities=13% Similarity=0.079 Sum_probs=81.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCchhHHHHH------------------HHHH--hhcCCHHHHHHHHHHHHhhCCC
Q psy6603 35 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVY------------------GLLQ--RSDKKYDEAIKCYRNALKWEHD 94 (724)
Q Consensus 35 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l------------------g~~~--~~~g~~~~A~~~~~~a~~~~p~ 94 (724)
|.-..-.|..++..++..+.....|-...-|+.- |..+ ...|+...-+.+|-+. +..
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~---n~~ 90 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---NTL 90 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---TCC
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh---cch
Confidence 4445567888999999998887666544334321 1111 1246666777776553 222
Q ss_pred cHHHHHHHH-HHHHHhcchHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q psy6603 95 NIQIMRDLS-LLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160 (724)
Q Consensus 95 ~~~~~~~la-~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 160 (724)
+. +..+| ......|+-++-.+.+...+...|-+++.+..+|.+|.+.|+..+|.+++.++-+..
T Consensus 91 se--~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 91 NE--HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CH--HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HH--HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 21 23333 345578888888888888777778889999999999999999999999888766544
No 299
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=44.66 E-value=47 Score=23.47 Aligned_cols=26 Identities=19% Similarity=0.018 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAAI 382 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~l 382 (724)
.+...|.-....|++++|+.+|..++
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444455556655555555544
No 300
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=44.45 E-value=43 Score=28.58 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=23.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhhCCCc
Q psy6603 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDN 95 (724)
Q Consensus 65 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~ 95 (724)
.+.+|.++...++|.+|.+.|..|+...|..
T Consensus 17 ~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 17 KYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 5666888888888888888888888777654
No 301
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.44 E-value=2.2e+02 Score=27.31 Aligned_cols=69 Identities=16% Similarity=0.062 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhhccCCCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q psy6603 131 ASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYD-FEHSELLLYQSMVIQDSGDLEEAVKHLDRFKE 199 (724)
Q Consensus 131 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 199 (724)
.....++..|...|+.++|...++++.......++.. ..+...+...+..+...+++..+....-..+.
T Consensus 128 ~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 128 LIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3556678889999999999999888876664443322 23444445555566666777666555544443
No 302
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=44.16 E-value=90 Score=22.71 Aligned_cols=26 Identities=12% Similarity=-0.139 Sum_probs=17.6
Q ss_pred hhHHHHhhhhHhhhcCChHHHHHHHH
Q psy6603 521 HGETLAMKGLTLNCLGRKEEAYEYVR 546 (724)
Q Consensus 521 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 546 (724)
.++.--.++.+-.+.|-.+++...+.
T Consensus 67 ~pdlepw~ALce~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 67 WPALEPWFALCEWHLGLGAALDRRLA 92 (115)
T ss_dssp CGGGHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcccHHHHHHHHH
Confidence 34456666777777887777777663
No 303
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=43.93 E-value=47 Score=23.56 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy6603 206 TVEETYGALKLKLGQYNEAMKHYESLI 232 (724)
Q Consensus 206 ~~~~~la~~~~~~g~~~~A~~~~~~~~ 232 (724)
..+...+..+.+.|+|++|+.+.+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345566777777777777777766654
No 304
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.67 E-value=1.1e+02 Score=24.80 Aligned_cols=24 Identities=4% Similarity=-0.249 Sum_probs=15.8
Q ss_pred hHHHHHHHcCCHHHHHHHHHHhhh
Q psy6603 428 KCAKYMLRANLIKEAEETCSKFTR 451 (724)
Q Consensus 428 ~~~~~~~~~g~~~~A~~~~~~~~~ 451 (724)
..|..+.+.|+...|..++.+++.
T Consensus 80 AvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 80 AGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345556667777777777777654
No 305
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=43.25 E-value=59 Score=22.75 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=23.5
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhh
Q psy6603 631 CALAYQRLGRWGDTLKKCHEVDRHFSEII 659 (724)
Q Consensus 631 la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 659 (724)
.|.-.-+.|++++|+..|...++.|....
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 44466788999999999999998877654
No 306
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=42.95 E-value=1.7e+02 Score=25.52 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHH
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAIDHTPT-LIELFVTKGRIYK 400 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~ 400 (724)
.++.+..+.++|++...+.+++.+.+|. +.+-...+..+|.
T Consensus 10 ~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayK 51 (234)
T 2br9_A 10 YQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYK 51 (234)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 6788888899999999999999998765 4455555555553
No 307
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=42.49 E-value=2.2e+02 Score=26.62 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=34.2
Q ss_pred HHHHHHHhhhc-----CCCccchHHHHHHHHhccccHHHHHHHHHHHhh------hccccHHHHHHH
Q psy6603 541 AYEYVRRGLRN-----DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK------WEHDNIQIMRDL 596 (724)
Q Consensus 541 A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~l 596 (724)
++.+|.+++.. +-....-+..+|..+++.+++.+|+..+-.+-. ...++.+++..+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf 342 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEF 342 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence 55566665543 222333566677788888888888888877655 234455555444
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.36 E-value=1.3e+02 Score=24.06 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHhhhhHhhhcCChHHHHHHHHHhhhcCCCc
Q psy6603 504 NGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555 (724)
Q Consensus 504 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 555 (724)
++..+|.-+....-....+..|...|..+...|++.+|.++|+..++.....
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3555555555544445567788999999999999999999999999875544
No 309
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=41.44 E-value=96 Score=22.25 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=24.9
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhcc
Q psy6603 631 CALAYQRLGRWGDTLKKCHEVDRHFSEIIED 661 (724)
Q Consensus 631 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 661 (724)
.|.-.-..|++++|+..|...++.|......
T Consensus 21 ~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~ 51 (93)
T 1wfd_A 21 RAVELDAESRYQQALVCYQEGIDMLLQVLKG 51 (93)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678899999999999999988876544
No 310
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=41.40 E-value=68 Score=23.12 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHcCCcHHH
Q psy6603 209 ETYGALKLKLGQYNEAMKHYESLIERNQENTLY 241 (724)
Q Consensus 209 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 241 (724)
..+|..+...|+++.|+.+|-+++...|.-...
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 345666666666667776666666666654443
No 311
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=41.01 E-value=1.9e+02 Score=25.62 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC---CC-hHHHHHHHHHHHH
Q psy6603 359 HYLAQHYDHLGDTMKALNYINAAIDHT---PT-LIELFVTKGRIYK 400 (724)
Q Consensus 359 ~~la~~~~~~~~~~~A~~~~~~~l~~~---p~-~~~~~~~l~~~~~ 400 (724)
..++.+..+.++|++...+.+++.+.+ +. +.+-...+..+|.
T Consensus 32 v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyK 77 (260)
T 2npm_A 32 VYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYK 77 (260)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHH
Confidence 367888888999999999999999876 54 4555566666654
No 312
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=40.72 E-value=22 Score=27.00 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhhhcCCCccchHHHHHHHHhccccHHHHHHHHHHHhh
Q psy6603 538 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584 (724)
Q Consensus 538 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 584 (724)
.+.|+.++.+|++.+ ..|+|++|+.+|..+++
T Consensus 15 l~kAi~lv~~Ave~D---------------~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQED---------------KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHH---------------HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HccCHHHHHHHHHHHHH
Confidence 346666666665432 35666666666666655
No 313
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=39.98 E-value=94 Score=21.75 Aligned_cols=17 Identities=35% Similarity=0.667 Sum_probs=10.4
Q ss_pred ccccHHHHHHHHHHHhh
Q psy6603 568 SDKKYDEAIKCYRNALK 584 (724)
Q Consensus 568 ~~~~~~~A~~~~~~al~ 584 (724)
..|++++|+.+|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 35666666666666655
No 314
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=39.10 E-value=98 Score=22.01 Aligned_cols=25 Identities=16% Similarity=0.011 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q psy6603 357 VYHYLAQHYDHLGDTMKALNYINAA 381 (724)
Q Consensus 357 ~~~~la~~~~~~~~~~~A~~~~~~~ 381 (724)
.+-..+..+...|+|++||++.+++
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555555666666666555443
No 315
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.21 E-value=2e+02 Score=24.76 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhccCCC--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHhhhh--ccHhhHHHHHHHHHHHcCChHHHH
Q psy6603 150 CNILEAFRKTQQVTNS--YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI--HDKLTVEETYGALKLKLGQYNEAM 225 (724)
Q Consensus 150 ~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~ 225 (724)
..+++++.+.+...+. .++....+|+..+.. .+.+..+|..+.... ......|...|..+...|++.+|.
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 170 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKAD 170 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 3456677766655544 234455666655542 135566666665543 445667888889999999999999
Q ss_pred HHHHHHHHHcCC
Q psy6603 226 KHYESLIERNQE 237 (724)
Q Consensus 226 ~~~~~~~~~~p~ 237 (724)
.+|+..++..-.
T Consensus 171 ~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 171 EVYQKGKRMKAK 182 (223)
T ss_dssp HHHHHHHHHTCB
T ss_pred HHHHHHHHcCCc
Confidence 999999987543
No 316
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=36.22 E-value=2.9e+02 Score=26.36 Aligned_cols=56 Identities=7% Similarity=0.217 Sum_probs=36.4
Q ss_pred HHHHHHHhhhc-----CCCccchHHHHHHHHhccccHHHHHHHHHHHhh------hccccHHHHHHH
Q psy6603 541 AYEYVRRGLRN-----DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK------WEHDNIQIMRDL 596 (724)
Q Consensus 541 A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~l 596 (724)
++.+|.+++.. .-....-|..+|..+++.+++.+|+..+-.+-. ...++.++|..+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf 364 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEF 364 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence 55666666643 223344677788888899999999998887765 234455555443
No 317
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=35.38 E-value=1.1e+02 Score=21.33 Aligned_cols=30 Identities=3% Similarity=-0.023 Sum_probs=23.2
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhhc
Q psy6603 631 CALAYQRLGRWGDTLKKCHEVDRHFSEIIE 660 (724)
Q Consensus 631 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 660 (724)
.|.-.-..|++++|+..|..+++.|-....
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k 48 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGLDYLMLALK 48 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 444566789999999999999988776543
No 318
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=33.43 E-value=2.7e+02 Score=25.98 Aligned_cols=44 Identities=23% Similarity=0.160 Sum_probs=26.5
Q ss_pred HHHHHHHHHHc-----CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q psy6603 47 AYEYVRRGLRN-----DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 90 (724)
Q Consensus 47 A~~~~~~~l~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 90 (724)
++.+|.+++.. +-.+...|..+|-.+++.+++.+|+..+..+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 56666666642 122344466666677777777777777766543
No 319
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=32.16 E-value=2.5e+02 Score=24.42 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=37.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHH-cCCHHHHHHHHH
Q psy6603 360 YLAQHYDHLGDTMKALNYINAAIDHTPT-LIELFVTKGRIYKH-AGDVLEAYKWLD 413 (724)
Q Consensus 360 ~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~ 413 (724)
.+|.+..+.++|++...+.+++.+.++. +.+-...+..+|.. .|....+...+.
T Consensus 13 ~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiis 68 (236)
T 3iqu_A 13 QKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLS 68 (236)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 6788888999999999999999998875 45556666666532 233344444443
No 320
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.53 E-value=1.7e+02 Score=24.85 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=29.7
Q ss_pred HHHHhccccHHHHHHHHHHHhhhccccHHHHHHHHHH
Q psy6603 563 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 599 (724)
Q Consensus 563 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 599 (724)
-.++.+.|.|++|.+.+++.+..+|.+......|..+
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~I 157 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI 157 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3566788999999999999999887777777777654
No 321
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=30.35 E-value=2e+02 Score=22.62 Aligned_cols=56 Identities=5% Similarity=-0.006 Sum_probs=44.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy6603 179 MVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIER 234 (724)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (724)
..+..+|+-++-.+.+...+...+.+++.+..+|.+|.+.|+..+|...+.++-+.
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 35667788888777777776767777888999999999999999999988888765
No 322
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.26 E-value=3.3e+02 Score=25.10 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcchhhhhhhhhhhhhHhh----h-hh---chHHHHHHHHHHhcCCCCCchhHHHHhhhhHhh---h-c--
Q psy6603 470 TECALAYQRLGRWGDTLKKCHEVDRKCY----E-HK---QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLN---C-L-- 535 (724)
Q Consensus 470 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~-~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~-~-- 535 (724)
...|.-+...|++++|+..|+.++...- + .. +.++.+.++++ +.+|.... + +
T Consensus 118 Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrE--------------Yilal~iEl~Rr~l~~ 183 (325)
T 3mv2_A 118 MNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETARE--------------YILGLSIELERRSLKE 183 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCc
Confidence 3467788889999999999998873221 1 11 22222222222 11221111 1 1
Q ss_pred CChHHHHHHHH--HhhhcCCCccc-hHHHHHHHHhccccHHHHHHHHHHHhhhccccH
Q psy6603 536 GRKEEAYEYVR--RGLRNDLKSHV-CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 590 (724)
Q Consensus 536 g~~~~A~~~~~--~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 590 (724)
.+....+++.- ...++.|..-. ++..-.....+.++|..|..+-++.+++.|...
T Consensus 184 ~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 184 GNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp TCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred ccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 11122222211 22233443333 444445677789999999999999999998644
No 323
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=29.52 E-value=1e+02 Score=21.52 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=11.0
Q ss_pred HHHHhhcCCHHHHHHHHHHHHh
Q psy6603 69 GLLQRSDKKYDEAIKCYRNALK 90 (724)
Q Consensus 69 g~~~~~~g~~~~A~~~~~~a~~ 90 (724)
|.-+++.++|.+|...|+++..
T Consensus 60 ak~~y~~~ny~ea~~l~~k~~n 81 (106)
T 2vkj_A 60 GKDLFETANYGEALVFFEKALN 81 (106)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhHHHHHHHHHHc
Confidence 4444445555555555555543
No 324
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.62 E-value=81 Score=21.75 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy6603 208 EETYGALKLKLGQYNEAMKHYESLIER 234 (724)
Q Consensus 208 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 234 (724)
...+|+-+...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456777788888888888888887754
No 325
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.53 E-value=5.7e+02 Score=26.64 Aligned_cols=43 Identities=7% Similarity=-0.085 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhhccHhhHHHHHHHHHHH
Q psy6603 175 LYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLK 217 (724)
Q Consensus 175 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 217 (724)
...|......|++++|+.+|.-+-+.+.--.-....++.+...
T Consensus 447 ~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~ 489 (661)
T 2qx5_A 447 EQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSA 489 (661)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcc
Confidence 3445566778888888888776544332222233344555543
No 326
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=26.51 E-value=20 Score=24.98 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCchhHH-HHHHHHH
Q psy6603 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRND--LKSHVCW-HVYGLLQ 72 (724)
Q Consensus 26 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~-~~lg~~~ 72 (724)
.++..+...|.-+++.++|.+|..+|+++.... |.-..++ +.++.|-
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 456677888999999999999999999987543 2222223 5555554
No 327
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=26.45 E-value=2.1e+02 Score=21.61 Aligned_cols=29 Identities=14% Similarity=0.276 Sum_probs=23.3
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHhhhh
Q psy6603 631 CALAYQRLGRWGDTLKKCHEVDRHFSEII 659 (724)
Q Consensus 631 la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 659 (724)
.|.-.-..|+|++|+..|..+++.|-...
T Consensus 24 ~Ave~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 24 KAAQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 34456678999999999999998877665
No 328
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.78 E-value=4.5e+02 Score=25.22 Aligned_cols=57 Identities=7% Similarity=0.197 Sum_probs=37.6
Q ss_pred HHHHHHHhhhc-----CCCccchHHHHHHHHhccccHHHHHHHHHHHhh------hccccHHHHHHHH
Q psy6603 541 AYEYVRRGLRN-----DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK------WEHDNIQIMRDLS 597 (724)
Q Consensus 541 A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~l~ 597 (724)
++.+|++++.. .-....-|..+|-.+.+.+++.+|+..+..+-. ...++.+++..+.
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~ 350 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFF 350 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHH
Confidence 45566666653 222334667778888889999999999988865 3345566665543
No 329
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=25.28 E-value=4.2e+02 Score=25.37 Aligned_cols=27 Identities=7% Similarity=0.157 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy6603 63 VCWHVYGLLQRSDKKYDEAIKCYRNAL 89 (724)
Q Consensus 63 ~~~~~lg~~~~~~g~~~~A~~~~~~a~ 89 (724)
..|..+|-.+++.+++.+|+..+..+-
T Consensus 319 YPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 319 YPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cceeecchhhhhcchHHHHHHHHHHHH
Confidence 335555556666666666666655543
No 330
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=24.67 E-value=87 Score=32.77 Aligned_cols=52 Identities=10% Similarity=-0.135 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcchH
Q psy6603 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 113 (724)
Q Consensus 62 ~~~~~~lg~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~la~~~~~~~~~~ 113 (724)
.......|...+..|+|.-|.+....++..+|+|..+...++.++.++|.-.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 3444556667777889999999999999889999888888888888887644
No 331
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=22.90 E-value=2.1e+02 Score=20.49 Aligned_cols=24 Identities=13% Similarity=-0.095 Sum_probs=12.8
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhC
Q psy6603 69 GLLQRSDKKYDEAIKCYRNALKWE 92 (724)
Q Consensus 69 g~~~~~~g~~~~A~~~~~~a~~~~ 92 (724)
|..++..|+|=+|-+.++.+-...
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~ 31 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKA 31 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCChHHHHHHHHHHHhhC
Confidence 444444555555555555555544
No 332
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.43 E-value=5.2e+02 Score=24.80 Aligned_cols=45 Identities=7% Similarity=0.165 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHc-----CCCchhHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q psy6603 46 EAYEYVRRGLRN-----DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 90 (724)
Q Consensus 46 ~A~~~~~~~l~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a~~ 90 (724)
.++.+|++++.. .-.+...|..+|-.+++.+++.+|+..+..+-.
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 355666666642 223344466667777777777777777776644
No 333
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=21.01 E-value=5.4e+02 Score=25.35 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHhh-hccccHHHHHHHHHHHHHhhhH
Q psy6603 571 KYDEAIKCYRNALK-WEHDNIQIMRDLSLLQIQMRDL 606 (724)
Q Consensus 571 ~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~ 606 (724)
.|++|+++++++-. -+|+....+..++..|...||+
T Consensus 454 ~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGDy 490 (526)
T 2wb7_A 454 EYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGDY 490 (526)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccHH
Confidence 57788888888773 5566666777777777777774
No 334
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=20.31 E-value=4.3e+02 Score=23.00 Aligned_cols=26 Identities=12% Similarity=-0.051 Sum_probs=18.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcc
Q psy6603 137 AMAYHLLHDFDMACNILEAFRKTQQV 162 (724)
Q Consensus 137 a~~~~~~g~~~~A~~~~~~~~~~~~~ 162 (724)
-.++....++++|+..+++..+....
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~ 50 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLED 50 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34566778888888888877666543
Done!