RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6603
(724 letters)
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 82.8 bits (204), Expect = 2e-16
Identities = 57/628 (9%), Positives = 131/628 (20%), Gaps = 99/628 (15%)
Query: 21 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 80
P +A L + + + V + +++ +
Sbjct: 188 TPAQVV---AIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQR 244
Query: 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140
+ A D + + + + ++ Q L P Q +
Sbjct: 245 LLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGK 304
Query: 141 HLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQ 200
L L + +T + Q ++ + L +
Sbjct: 305 QALETVQRL---LPVLCQAHGLTPDQVVAIASHDG----GKQALETVQRLLPVLCQAHGL 357
Query: 201 IHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQL 260
D++ + G K L + + + + L
Sbjct: 358 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQR---- 413
Query: 261 LTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEK- 319
+ +A L+ + V + E
Sbjct: 414 ---LLPVLCQAH---GLTPDQVVA----------------------IASHDGGKQALETV 445
Query: 320 -------CKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALL-----------WVYHYL 361
C+ L + V A++ Q V+ +L
Sbjct: 446 QRLLPVLCQTHG-LTPAQVVAIASHDG-GKQALETVQQLLPVLCQAHGLTPDQVVAIASN 503
Query: 362 AQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA 421
L + L + A TP + + G + V L +A L
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 563
Query: 422 DRYINSKCAKYMLRANLIKEAEETCSK---FTREGVSAMENLNEMQCMWFQTECALAYQR 478
+ ++ + T+ V A+ + Q
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASN------------IGGKQA 611
Query: 479 LGRWGDTLKKCHEVDRKC--------------YEHKQYKNGLK-FAKQILTNPKYAEHGE 523
L L + + + L + P
Sbjct: 612 LETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQV---V 668
Query: 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNAL 583
+A G L + + + + V +++ + + A
Sbjct: 669 AIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAH 728
Query: 584 KWEHDNIQIMRDLSLLQIQMRDLEGYRE 611
D + ++ + LE +
Sbjct: 729 GLTPDQVVA---IASNGGGKQALETVQR 753
Score = 76.2 bits (187), Expect = 2e-14
Identities = 54/601 (8%), Positives = 126/601 (20%), Gaps = 99/601 (16%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
+ P +A L + + + V G ++
Sbjct: 317 LCQAHGLTPDQVV---AIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 373
Query: 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133
+ + + A D + + Q + ++ Q L P Q +
Sbjct: 374 ALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAI 432
Query: 134 IGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKH 193
L L +T +T + + + Q +++ +
Sbjct: 433 ASHDGGKQALETVQRL---LPVLCQTHGLTPAQVVAIASHDGGK----QALETVQQLLPV 485
Query: 194 LDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTN 253
L + D++ + K L + + + +
Sbjct: 486 LCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIA---------S 536
Query: 254 NDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSL 313
N Q L P L+ + V +G
Sbjct: 537 NGGGKQALETVQRLLPVLCQAHGLTPDQVVA---------IASNG--------------- 572
Query: 314 YSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMK 373
+ +E+ L L + + + + L +
Sbjct: 573 --------GGKQALETVQRLLP-----VLCQAHGLTQVQVVAIASNIGGKQA--LETVQR 617
Query: 374 ALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDT--ADRYINSKCAK 431
L + A TP + + + V L +A L ++ K
Sbjct: 618 LLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 677
Query: 432 YMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHE 491
L ++ + A E +A L+
Sbjct: 678 QALET--VQRLLPVLCQ-------AHG---------LTQEQVVAIASNNGGKQALE---- 715
Query: 492 VDRKCYEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR 550
+ L + P +A G L + + +
Sbjct: 716 ---------TVQRLLPVLCQAHGLTPDQVV---AIASNGGGKQALETVQRLLPVLCQAHG 763
Query: 551 NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYR 610
V +++ + + + ++ + LE +
Sbjct: 764 LTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVV---AIASNIGGKQALETVQ 820
Query: 611 E 611
Sbjct: 821 R 821
Score = 75.5 bits (185), Expect = 4e-14
Identities = 52/596 (8%), Positives = 125/596 (20%), Gaps = 92/596 (15%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
+ P +A L + + + V +G ++
Sbjct: 249 LCQAHGLPPDQVV---AIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQ 305
Query: 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133
+ + + A D + + + + ++ Q L P Q +
Sbjct: 306 ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 365
Query: 134 IGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKH 193
L L + +T + + + Q ++ +
Sbjct: 366 ASNGGGKQALETVQRL---LPVLCQAHGLTPDQ-----VVAIASNGGKQALETVQRLLPV 417
Query: 194 LDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTL-YYNKLVEAKQLT 252
L + D++ ++ K L + + + + L
Sbjct: 418 LCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALE 477
Query: 253 NNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRS 312
+ + +A L + I + + P+
Sbjct: 478 TVQQL-------LPVLCQA-----HGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHG 525
Query: 313 LYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALL-----------WVYHYL 361
L + V A++ G Q V+ +L
Sbjct: 526 LTPD-------------QVVAIASNGG-GKQALETVQRLLPVLCQAHGLTPDQVVAIASN 571
Query: 362 AQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA--QSLD 419
L + L + A T + + + V L +A +
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
Query: 420 TADRYINSKCAKYMLRANLIKEAEETCSK---FTREGVSAMENLNEMQCMWFQTECALAY 476
+ K L ++ + T + V A+ +
Sbjct: 632 QVVAIASHDGGKQALET--VQRLLPVLCQAHGLTPDQVVAIASN------------GGGK 677
Query: 477 QRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCL 535
Q L + L Q + +A L
Sbjct: 678 QALET--------------------VQRLLPVLCQAHGLTQEQVV---AIASNNGGKQAL 714
Query: 536 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 591
+ + + V G +++ + + A +
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVV 770
Score = 68.5 bits (167), Expect = 5e-12
Identities = 49/556 (8%), Positives = 120/556 (21%), Gaps = 100/556 (17%)
Query: 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFM 124
+++ + + A + + + + ++ Q
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254
Query: 125 LRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS 184
L P Q + L L + +T + + Q
Sbjct: 255 LPPDQVVAIASNIGGKQALETVQRL---LPVLCQAHGLTP----DQVVAIASHGGGKQAL 307
Query: 185 GDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNK 244
++ + L + D++ ++ K L + +
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ------ 361
Query: 245 LVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVP 304
+ +N Q L P L+ + V +G + +
Sbjct: 362 ---VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQV---------VAIASNGGKQALE 409
Query: 305 PLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQH 364
+ Q L+ +A + P + H +
Sbjct: 410 TV-----------------QRLLPVLCQAH------------GLTPDQVVAIASHDGGKQ 440
Query: 365 YDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDT--AD 422
L + L + TP + + + V + L +A L
Sbjct: 441 A--LETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVV 498
Query: 423 RYINSKCAKYMLRANLIKEAEETCSK---FTREGVSAMENLNEMQCMWFQTECALAYQRL 479
++ K L ++ + T + V A+ + Q L
Sbjct: 499 AIASNIGGKQALAT--VQRLLPVLCQAHGLTPDQVVAIASN------------GGGKQAL 544
Query: 480 GRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKE 539
L + P + +A G L +
Sbjct: 545 ETV-QRLLPV------------------LCQAHGLTP---DQVVAIASNGGGKQALETVQ 582
Query: 540 EAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 599
+ + V +++ + + A + ++
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA---IASH 639
Query: 600 QIQMRDLEGYREGVSA 615
+ LE + +
Sbjct: 640 DGGKQALETVQRLLPV 655
Score = 67.0 bits (163), Expect = 2e-11
Identities = 61/591 (10%), Positives = 133/591 (22%), Gaps = 113/591 (19%)
Query: 66 HVYGLLQRSDKKYDEAIKCYRNALKWEHDNI--QIMRDLSLLQIQMRDLEGYRE--TRY- 120
+ + +R EA+ RNAL N+ + ++ + LE +
Sbjct: 157 QLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLC 216
Query: 121 QLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMV 180
Q L P Q + L L + + +
Sbjct: 217 QAHGLTPAQVVAIASHDGGKQALETMQRL---LPVLCQAHGLPPDQ----VVAIASNIGG 269
Query: 181 IQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTL 240
Q ++ + L + D++ ++G K L + + +
Sbjct: 270 KQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVV 329
Query: 241 YYNKLVEAKQLTNNDDIFQLLTHY---ISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRH 297
++D Q L + +A L+ + V
Sbjct: 330 AIA---------SHDGGKQALETVQRLLPVLCQAH---GLTPDQVVA------------- 364
Query: 298 GFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWV 357
+ E +Q L+ +A + P +
Sbjct: 365 ---------IASNGGGKQALET---VQRLLPVLCQAH------------GLTPDQVVAIA 400
Query: 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417
+ Q L + L + A TP + + + V L +
Sbjct: 401 SNGGKQA---LETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHG 457
Query: 418 LDT--ADRYINSKCAKYMLRANLIKEAEETCSK---FTREGVSAMENLNEMQCMWFQTEC 472
L + K L +++ + T + V A+ +
Sbjct: 458 LTPAQVVAIASHDGGKQALET--VQQLLPVLCQAHGLTPDQVVAIASN------------ 503
Query: 473 ALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTL 532
Q L L + P +A G
Sbjct: 504 IGGKQALATVQRLLPV-------------------LCQAHGLTPDQVV---AIASNGGGK 541
Query: 533 NCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQI 592
L + + + V G +++ + + A +
Sbjct: 542 QALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVA 601
Query: 593 MRDLSLLQIQMRDLEGYREGVSAMENLNEMQ--CMWFQTECALAYQRLGRW 641
++ + LE + + + + + + Q L
Sbjct: 602 ---IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETV 649
Score = 52.0 bits (124), Expect = 7e-07
Identities = 33/321 (10%), Positives = 73/321 (22%), Gaps = 51/321 (15%)
Query: 324 QDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAID 383
Q +EAL +++ + + + + AL A ++
Sbjct: 129 QWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNAL--TGAPLN 186
Query: 384 HTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDT--ADRYINSKCAKYMLRANLIKE 441
TP + + + V L +A L + K L ++
Sbjct: 187 LTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET--MQR 244
Query: 442 AEETCSK---FTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYE 498
+ + V A+ + Q L L
Sbjct: 245 LLPVLCQAHGLPPDQVVAIASN------------IGGKQALETVQRLL------------ 280
Query: 499 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVC 558
+ P +A G L + + + V
Sbjct: 281 -------PVLCQAHGLTPDQVV---AIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330
Query: 559 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMEN 618
+ +++ + + A D + ++ + LE + +
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA---IASNGGGKQALETVQR---LLPV 384
Query: 619 LNEMQCMWFQTECALAYQRLG 639
L Q + +A G
Sbjct: 385 LC--QAHGLTPDQVVAIASNG 403
Score = 43.1 bits (101), Expect = 3e-04
Identities = 26/293 (8%), Positives = 65/293 (22%), Gaps = 34/293 (11%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
+ + +A L + + + V G ++
Sbjct: 690 LCQAHGLTQEQVV---AIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 746
Query: 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133
+ + + A + + + + ++ Q L Q +
Sbjct: 747 ALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAI 806
Query: 134 IGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKH 193
L L + +T + + + Q ++ +
Sbjct: 807 ASNIGGKQALETVQRL---LPVLCQAHGLTQDQVVAIASNIGGK----QALETVQRLLPV 859
Query: 194 LDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESL--IERNQENTLYYNKLVEAKQ- 250
L + D++ + K L + + +Q + N +A +
Sbjct: 860 LCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALET 919
Query: 251 ---------------------LTNNDDIFQLLTHYISKYPKATVPKRLSLNYV 282
+ +N Q L P L+ N V
Sbjct: 920 VQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQV 972
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 79.8 bits (197), Expect = 9e-16
Identities = 77/564 (13%), Positives = 154/564 (27%), Gaps = 101/564 (17%)
Query: 69 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128
G +KKYD+AIK Y AL+ + D +
Sbjct: 13 GNQFFRNKKYDDAIKYYNWALELKEDPV-------------------------------- 40
Query: 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLE 188
+ + Y + D +E K ++ Y S++LL ++ + G
Sbjct: 41 ---FYSNLSACYVSVGDLKKV---VEMSTKALELKPDY----SKVLLRRASANEGLGKFA 90
Query: 189 EAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTLYYNKL 245
+A+ L E K + + E ++ E + K
Sbjct: 91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150
Query: 246 VEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFR---TEIDKYLRHGFHKG 302
+ KQ N + + + + + + + + K + K
Sbjct: 151 RKDKQ--ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKA 208
Query: 303 VPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALL------- 355
R +K + L E +L TG F + + A +
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF-KFLKNDPLGAHEDIKKAIELF 267
Query: 356 ---WVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWL 412
Y Y+A D+ + NY + A+ ++ +G++ + +A K
Sbjct: 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327
Query: 413 DEAQSL--DTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQT 470
D+A+ L + YI C Y N + E S+
Sbjct: 328 DKAKELDPENIFPYIQLACLAYRE--NKFDDCETLFSE----------------AKRKFP 369
Query: 471 ECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLK-FAKQILTNPKYAE----HGETL 525
E + L + + LK + I K +
Sbjct: 370 EAPEVPNFFA---EIL----------TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLV 416
Query: 526 AMKGL--TLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNAL 583
L + EA + + + D +S ++ + DEAI + +
Sbjct: 417 GKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476
Query: 584 KWEHDNIQIMRDLSLLQIQMRDLE 607
+ ++ ++ +
Sbjct: 477 DLARTMEEKLQAITFAEAAKVQQR 500
Score = 70.9 bits (174), Expect = 6e-13
Identities = 60/486 (12%), Positives = 133/486 (27%), Gaps = 76/486 (15%)
Query: 183 DSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENT 239
+ ++A+K+ + E D Y A + +G + ++ +E + +
Sbjct: 18 RNKKYDDAIKYYNWALELKED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS 73
Query: 240 LYYNKLVEAKQLTNNDD-------IFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEID 292
+ A + + L + + + + +LN + + + +
Sbjct: 74 KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER--NLNKQAMSKLKEKFG 131
Query: 293 KYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQD---EGEVE 349
L + ++ + S+ F+ D E + E
Sbjct: 132 DIDTAT--ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189
Query: 350 PASALLWVYHYLAQHYDHLG-DTMKALNYINAAIDHTPTLIEL-------FVTKGRIYKH 401
+ L +Y + YD KA +D +L G
Sbjct: 190 LMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 402 AGDVLEAYKWLDEAQSLD-TADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENL 460
D L A++ + +A L + YI N E K A++
Sbjct: 250 KNDPLGAHEDIKKAIELFPRVNSYIYMALIMADR--NDSTEYYNYFDK-------ALK-- 298
Query: 461 NEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLK-FAKQILTNPKYA 519
+ + Y G+ + + + Y K F K +P+
Sbjct: 299 -------LDSNNSSVYYHRGQ-------MN------FILQNYDQAGKDFDKAKELDPENI 338
Query: 520 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCY 579
+ ++ R ++ + + + +D+A+K Y
Sbjct: 339 F---PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395
Query: 580 RNALKWE------HDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECAL 633
A++ E + I + + L + +E + E A L +
Sbjct: 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE---ATNLLE--KASKLDPRSEQ 450
Query: 634 AYQRLG 639
A L
Sbjct: 451 AKIGLA 456
Score = 59.8 bits (145), Expect = 2e-09
Identities = 25/205 (12%), Positives = 65/205 (31%), Gaps = 8/205 (3%)
Query: 41 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 100
EE + + K + G+ + A + + A++ +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRVNSYI 274
Query: 101 DLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160
++L+ D Y + L + + +L ++D A + F K +
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA---GKDFDKAK 331
Query: 161 QVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQ 220
++ F + +L + + ++ K + + V + +
Sbjct: 332 ELDPENIFPYIQL----ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND 387
Query: 221 YNEAMKHYESLIERNQENTLYYNKL 245
+++A+K Y+ IE + Y +
Sbjct: 388 FDKALKQYDLAIELENKLDGIYVGI 412
Score = 59.0 bits (143), Expect = 3e-09
Identities = 64/568 (11%), Positives = 137/568 (24%), Gaps = 109/568 (19%)
Query: 1 KCYEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDL 59
+ + +K+Y + +K + + + +G ++ E + L
Sbjct: 15 QFFRNKKYDDAIKYYNWALELKEDP----VFYSNLSACYVSVGDLKKVVEMSTKALELKP 70
Query: 60 KSHVCWHVYGLLQRSDKKYDEAIKCY-----------------------RNALKWEHDNI 96
K+ +A+ + A+ +
Sbjct: 71 DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130
Query: 97 QIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAF 156
+ + ++ Q + T AS+ G ++D + +
Sbjct: 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190
Query: 157 RKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKL 216
N Y + + EE + + ++ E G K
Sbjct: 191 MNGLS--NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248
Query: 217 KLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKR 276
A + + IE Y + ++ + Y + + KA
Sbjct: 249 LKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTE-------YYNYFDKA----- 296
Query: 277 LSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSK 336
L L+ Y +H+G + + + + +A
Sbjct: 297 LKLD-------SNNSSVY----YHRGQ---------MNFILQN---YDQAGKDFDKAK-- 331
Query: 337 TGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKG 396
E++P + + Y LA + A P E+
Sbjct: 332 ----------ELDPENI--FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379
Query: 397 RIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVS- 455
I D +A K D A L+ I Y+ A L+ +A T E
Sbjct: 380 EILTDKNDFDKALKQYDLAIELENKLDGI------YVGIAPLVGKATLLTRNPTVENFIE 433
Query: 456 AMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEH-KQYKNGLK-FAKQIL 513
A L + A L + + + F +
Sbjct: 434 ATNLLE--KASKLDPRSEQAKIGLA--------------QMKLQQEDIDEAITLFEESAD 477
Query: 514 TNPKYAEHGETLAMKGLTLNCLGRKEEA 541
E ++ +T + ++
Sbjct: 478 LARTMEE-----KLQAITFAEAAKVQQR 500
Score = 48.2 bits (115), Expect = 6e-06
Identities = 26/211 (12%), Positives = 67/211 (31%), Gaps = 22/211 (10%)
Query: 3 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
+ + Y K F K +P+ + ++ R ++
Sbjct: 315 FILQNYDQAGKDFDKAKELDPENIF---PYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRET-RY 120
+ + + +D+A+K Y A++ E+ I ++ L + L +
Sbjct: 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431
Query: 121 QLFM--------LRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSE 172
L P + IG A D D A + F ++ + + +
Sbjct: 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA---ITLFEESADLARTME----- 483
Query: 173 LLLYQSMVIQDSGDLEEAVKHLDRFKEQIHD 203
Q++ ++ +++ ++ ++I +
Sbjct: 484 -EKLQAITFAEAAKVQQRIRSDPVLAKKIQE 513
Score = 35.5 bits (82), Expect = 0.057
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 4/94 (4%)
Query: 515 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 574
KYA L KG + ++A +Y L + V + S +
Sbjct: 2 KDKYAL---ALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKK 57
Query: 575 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG 608
++ AL+ + D +++ + +
Sbjct: 58 VVEMSTKALELKPDYSKVLLRRASANEGLGKFAD 91
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 79.4 bits (196), Expect = 1e-15
Identities = 40/474 (8%), Positives = 96/474 (20%), Gaps = 102/474 (21%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
+ P+ +A L + + + + V + ++
Sbjct: 61 TGAPLNLTPEQVV---AIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 117
Query: 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133
+ + + A + + + + + ++ Q L P Q +
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAI 177
Query: 134 IGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAV-- 191
L L + + + + Q ++ +
Sbjct: 178 ASNGGGKQALETVQRL---LPVLCQAHGL----TPQQVVAIASNGGGKQALETVQRLLPV 230
Query: 192 ----------------------KHLDRFKEQIHD-----KLTVE--ETY---GALKLKLG 219
+ L+ + + LT + K L
Sbjct: 231 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290
Query: 220 QYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHY---ISKYPKATVPKR 276
+ + + +N Q L + +A
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIA---------SNGGGKQALETVQRLLPVLCQAH---G 338
Query: 277 LSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSK 336
L+ V H K + + +Q L+ +A
Sbjct: 339 LTPQQVVA---------IASHDGGK----------------QALETVQRLLPVLCQAH-- 371
Query: 337 TGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKG 396
+ P L + L + A TP + +
Sbjct: 372 ----------GLTPEQV--VAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD 419
Query: 397 RIYKHAGDVLEAYKWLDEAQSLDT--ADRYINSKCAKYMLRANLIKEAEETCSK 448
+ V L +A L ++ + L + I
Sbjct: 420 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALES--IVAQLSRPDP 471
Score = 74.0 bits (182), Expect = 5e-14
Identities = 55/601 (9%), Positives = 120/601 (19%), Gaps = 134/601 (22%)
Query: 5 HKQYKNG------LKFAKQILTNPKYAEHGETLAM--KGLTLNCLGRKEEAYEYVRRGLR 56
H Q+ L A ++ P + G+ L + +G L
Sbjct: 7 HHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66
Query: 57 NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYR 116
+ V + +++ + + A + + + + ++
Sbjct: 67 LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLL 126
Query: 117 ETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLY 176
Q L P Q + L L + + E +
Sbjct: 127 PVLCQAHGLTPEQVVAIASHDGGKQALETVQAL---LPVLCQAHGL----TPEQVVAIAS 179
Query: 177 QSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQ 236
Q ++ + L + ++ + G K L +
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 239
Query: 237 ENTLYYNKLVEAKQLTNNDDIFQLLTHY---ISKYPKATVPKRLSLNYVSGDQFRTEIDK 293
+ + +N Q L + +A L+ V
Sbjct: 240 QQVVAIA---------SNGGGKQALETVQRLLPVLCQAH---GLTPQQVVA--------- 278
Query: 294 YLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASA 353
+ E +Q L+ +A + P
Sbjct: 279 -------------IASNSGGKQALET---VQRLLPVLCQAH------------GLTPQQV 310
Query: 354 LLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLD 413
L + L + A TP + + + V L
Sbjct: 311 --VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 368
Query: 414 EAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECA 473
+A L V A+ +
Sbjct: 369 QAHGLTPEQ-------------------------------VVAIASN------------G 385
Query: 474 LAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLN 533
Q L L + P+ +A
Sbjct: 386 GGKQALETVQRLLP-------------------VLCQAHGLTPEQV---VAIASHDGGKQ 423
Query: 534 CLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIM 593
L + + + + V G + + + + AL ++ +
Sbjct: 424 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVA 483
Query: 594 R 594
Sbjct: 484 L 484
Score = 70.5 bits (173), Expect = 7e-13
Identities = 49/557 (8%), Positives = 118/557 (21%), Gaps = 100/557 (17%)
Query: 59 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRET 118
L+ H H + + + A + L+ + + + + + +R
Sbjct: 1 LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEA-VHAWRNA 59
Query: 119 RY-QLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQ 177
L P Q + L L + + + +
Sbjct: 60 LTGAPLNLTPEQVVAIASHDGGKQALETVQRL---LPVLCQAHGL----TPQQVVAIASH 112
Query: 178 SMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQE 237
Q ++ + L + +++ ++ K L + E
Sbjct: 113 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPE 172
Query: 238 NT-LYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLR 296
+ + L + +A L+ V
Sbjct: 173 QVVAIASNGGGKQALETVQR-------LLPVLCQAH---GLTPQQV---------VAIAS 213
Query: 297 HGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLW 356
+G E +Q L+ +A + P
Sbjct: 214 NG-------------GGKQALET---VQRLLPVLCQAH------------GLTPQQV--V 243
Query: 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQ 416
L + L + A TP + + + V L +A
Sbjct: 244 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAH 303
Query: 417 SLDT--ADRYINSKCAKYMLRANLIKEAEETCSK---FTREGVSAMENLNEMQCMWFQTE 471
L ++ K L ++ + T + V A+ +
Sbjct: 304 GLTPQQVVAIASNGGGKQALET--VQRLLPVLCQAHGLTPQQVVAIASH----------- 350
Query: 472 CALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLT 531
Q L L + P+ +A G
Sbjct: 351 -DGGKQALETVQRLLPV-------------------LCQAHGLTPEQVV---AIASNGGG 387
Query: 532 LNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 591
L + + + + V + +++ + + A +
Sbjct: 388 KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 447
Query: 592 IMRDLSLLQIQMRDLEG 608
+ + + +
Sbjct: 448 AIASNGGGRPALESIVA 464
Score = 62.5 bits (152), Expect = 2e-10
Identities = 27/321 (8%), Positives = 63/321 (19%), Gaps = 51/321 (15%)
Query: 330 YVEALSKTGHFSLQDEGEVEPASALL-----------WVYHYLAQHYDHLGDTMKALNYI 378
V A++ Q V+ +L L + L +
Sbjct: 71 QVVAIASHD-GGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129
Query: 379 NAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANL 438
A TP + + + V L +A L +
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALET 189
Query: 439 IKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYE 498
++ + A + Q L L
Sbjct: 190 VQRLLPVLCQ-------AHGLTPQQVVAIA--SNGGGKQALETVQRLLP----------- 229
Query: 499 HKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVC 558
+ P+ +A G L + + + + V
Sbjct: 230 --------VLCQAHGLTPQQV---VAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 278
Query: 559 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMEN 618
+++ + + A + + + + ++ +
Sbjct: 279 IASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR------LLPV 332
Query: 619 LNEMQCMWFQTECALAYQRLG 639
L Q + +A
Sbjct: 333 LC--QAHGLTPQQVVAIASHD 351
Score = 45.1 bits (107), Expect = 6e-05
Identities = 10/132 (7%), Positives = 32/132 (24%), Gaps = 11/132 (8%)
Query: 508 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567
+ P+ +A L + + + + V + ++
Sbjct: 61 TGAPLNLTPEQVV---AIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQ 117
Query: 568 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWF 627
+ + + A + + + + + ++ + L Q
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQA------LLPVLC--QAHGL 169
Query: 628 QTECALAYQRLG 639
E +A G
Sbjct: 170 TPEQVVAIASNG 181
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 78.6 bits (194), Expect = 2e-15
Identities = 65/501 (12%), Positives = 131/501 (26%), Gaps = 52/501 (10%)
Query: 153 LEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY- 211
+ + ++ S ++ L + + + EA+K+ ++ I Y
Sbjct: 7 EPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKY---YQYAIELDPNEPVFYS 63
Query: 212 --GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKY 268
A + G + ++ +E +++ + A + L N D L+
Sbjct: 64 NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNG 123
Query: 269 PKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVE 328
L Q +++ L +G L + SL S ++
Sbjct: 124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP-SNTSLASFFGIFDSHLEVSS 182
Query: 329 SYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTL 388
+ T + L D + ++ L+
Sbjct: 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA 242
Query: 389 IELFVTKGRIYKHAGDVLEAYKWLDEAQSLD-TADRYINSKCAKYMLRANLIKEAEETCS 447
G + ++L+A L E+ +L T + YI + N +E +
Sbjct: 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIF-LALTLADKENS-QEFFKFFQ 300
Query: 448 KFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLK 507
K A++ E Y G + + YKN +
Sbjct: 301 K-------AVD---------LNPEYPPTYYHRG---QMY----------FILQDYKNAKE 331
Query: 508 -FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQ 566
F K NP+ L G+ E+ + + +
Sbjct: 332 DFQKAQSLNPENVY---PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL 388
Query: 567 RSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEM---- 622
+D AIK Y A + E +I + L + L + +
Sbjct: 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448
Query: 623 ----QCMWFQTECALAYQRLG 639
+ A L
Sbjct: 449 KLLTKACELDPRSEQAKIGLA 469
Score = 78.2 bits (193), Expect = 3e-15
Identities = 70/599 (11%), Positives = 153/599 (25%), Gaps = 99/599 (16%)
Query: 7 QYKNGLKFAKQILT-NPKYAE-HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVC 64
+ NG Q+ +P + + L +G EA +Y + + D V
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFM 124
+ S ++ I+ AL+ + D+ + + + + + L +
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSL 121
Query: 125 LRPTQRASW-IGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQS----M 179
AS + + N+ + + QV S S ++ S
Sbjct: 122 NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181
Query: 180 VIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY--GALKLKLGQYNEAMKHYESLIERNQE 237
+ S + + A L ++++ L Y+ + +
Sbjct: 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241
Query: 238 NTLYYNKLVEAKQLTNN-DDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLR 296
L L NN D LL I+ +P
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNS----------------------- 278
Query: 297 HGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLW 356
++ L ++ E Q+ + + +A+ ++ P
Sbjct: 279 ----------YIFLALTLADKEN---SQEFFKFFQKAV------------DLNPEYP--P 311
Query: 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQ 416
Y++ Q Y L D A A P + ++ + G E+ + +E
Sbjct: 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET- 370
Query: 417 SLDTADRYINSKCAK-YMLRANL------IKEAEETCSKFTREGVSAMENLNEMQCMWFQ 469
+ + A + A + A L E
Sbjct: 371 ------KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI-------AKR-LEE------- 409
Query: 470 TECALAYQRLG---RWGDTLKKCHEVDRKCYEHKQYKNGLK-FAKQILTNPKYAEHGETL 525
+ +G L + D + +++ +K K +P+ +
Sbjct: 410 -VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE---QAK 465
Query: 526 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
+ + +EA E + K + ++
Sbjct: 466 IGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEA--AKIQKRLRADPIISA 522
Score = 73.2 bits (180), Expect = 1e-13
Identities = 81/559 (14%), Positives = 157/559 (28%), Gaps = 85/559 (15%)
Query: 42 GRKEEAYEYVRRGLRNDLKSH----VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 97
G + + V G + K ++EAIK Y+ A++
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE------- 53
Query: 98 IMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFR 157
L P + + + Y D + +E
Sbjct: 54 ---------------------------LDPNEPVFYSNISACYISTGDLEKV---IEFTT 83
Query: 158 KTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLK 217
K + +HS+ LL ++ + G+ +A+ L + + L+
Sbjct: 84 KALE----IKPDHSKALLRRASANESLGNFTDAMFDL----SVLSLNGDFDGASIEPMLE 135
Query: 218 LGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRL 277
+AMK + ++ T+ F + ++ T
Sbjct: 136 RNLNKQAMKVLNENLSKD-----EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN-Y 189
Query: 278 SLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKT 337
Y + G+ L + +S + L E+ AL T
Sbjct: 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249
Query: 338 GHFSLQDEGEVEPASALL----------WVYHYLAQHYDHLGDTMKALNYINAAIDHTPT 387
G F + + A LL Y +LA ++ + + A+D P
Sbjct: 250 GIF-HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE 308
Query: 388 LIELFVTKGRIYKHAGDVLEAYKWLDEAQSL--DTADRYINSKCAKYMLRANLIKEAEET 445
+ +G++Y D A + +AQSL + YI C Y E+E
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ--GKFTESEAF 366
Query: 446 CSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNG 505
++ T A G + +K+ R ++ G
Sbjct: 367 FNE-------TKL-KFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417
Query: 506 LKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLL 565
+ A + + T + A + + + D +S L
Sbjct: 418 IGPLIG------KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471
Query: 566 QRSDKKYDEAIKCYRNALK 584
+ +K DEAI+ + ++
Sbjct: 472 KLQMEKIDEAIELFEDSAI 490
Score = 60.9 bits (148), Expect = 9e-10
Identities = 30/234 (12%), Positives = 62/234 (26%), Gaps = 34/234 (14%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
F K NP+ L G+ E+ + + +
Sbjct: 333 FQKAQSLNPENVY---PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389
Query: 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133
+D AIK Y A + E +I + L + L
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA------------------RQ 431
Query: 134 IGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSEL-LLYQSMVIQDSGDLEEAVK 192
F+ A ++ K ++ + L L M ++EA++
Sbjct: 432 SSQDPTQLDEEKFNAA---IKLLTKACELDPRSEQAKIGLAQLKLQM-----EKIDEAIE 483
Query: 193 HLDRFKEQIHDKLTVEETYGALKLK-LGQYNEAMKHYESLIERNQENTLYYNKL 245
F++ T++E A + + ++ + + + Y
Sbjct: 484 L---FEDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYRAK 534
Score = 60.5 bits (147), Expect = 1e-09
Identities = 32/272 (11%), Positives = 72/272 (26%), Gaps = 11/272 (4%)
Query: 3 YEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH 62
Y L A L L +
Sbjct: 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243
Query: 63 VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQL 122
+ G+ +A + ++ H L+L + + + + +
Sbjct: 244 LALCYTGIFHFLKNNLLDAQVLLQESIN-LHPTPNSYIFLALTLADKENSQEFFKFFQKA 302
Query: 123 FMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQ 182
L P ++ Y +L D+ A E F+K Q + + + +L + ++
Sbjct: 303 VDLNPEYPPTYYHRGQMYFILQDYKNA---KEDFQKAQSLNPENVYPYIQL----ACLLY 355
Query: 183 DSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQEN-TLY 241
G E+ + K + V + + G ++ A+K Y+ + ++
Sbjct: 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415
Query: 242 YNKLVEAKQLTNNDDIFQLLTHYIS--KYPKA 271
+ T + K+ A
Sbjct: 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447
Score = 52.0 bits (125), Expect = 5e-07
Identities = 38/257 (14%), Positives = 91/257 (35%), Gaps = 29/257 (11%)
Query: 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 93
LTL +E +++ ++ + + + ++ G + + Y A + ++ A
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
Query: 94 DNIQIMRDLSLLQIQMRDLEG----YRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMA 149
+N+ L+ L + + ET+ PT FA DFD A
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKL----KFPTLPEVPTFFAEILTDRGDFDTA 397
Query: 150 CNILEAFRKTQQVTNSYDFEHSEL--LLYQSMVIQDSGDLEEAVKHLDRFKEQIHD---- 203
++ + +++ + H + L+ ++ ++ + ++F I
Sbjct: 398 ---IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454
Query: 204 ---KLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTLYYN--KLVEA----KQL 251
E+ LKL++ + +EA++ +E + EA K+L
Sbjct: 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRL 514
Query: 252 TNNDDIFQLLTHYISKY 268
+ I + +++Y
Sbjct: 515 RADPIISAKMELTLARY 531
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 75.5 bits (186), Expect = 2e-14
Identities = 56/433 (12%), Positives = 124/433 (28%), Gaps = 73/433 (16%)
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLY 241
+++ +++ E G L GQ +A+ + + ++ + +N +
Sbjct: 14 GTENLYFQSMADVEKHLEL-----------GKKLLAAGQLADALSQFHAAVDGDPDNYIA 62
Query: 242 YNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHK 301
Y + + K A I L+ F
Sbjct: 63 YYRRATVFL-------------AMGKSKAAL------------PDLTKVIQ--LKMDFTA 95
Query: 302 GVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHY- 360
+ L K + + + + L + + E + + +
Sbjct: 96 A----RLQRGHLLLKQGKL---DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148
Query: 361 LAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDT 420
A + GD A+ +++ ++ EL + + G+ +A L A L
Sbjct: 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208
Query: 421 --ADRYINSKCAKYMLRANLIKEAEETCSKFTR---EGVSAMENLNEMQCMWFQTECALA 475
+ + Y L + + + + + + +++ + E A
Sbjct: 209 DNTEAFYKISTLYYQL--GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266
Query: 476 YQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAE-HGETLAMKGLTLNC 534
R GR+ D K V + T P AE + +
Sbjct: 267 LIRDGRYTDATSKYESV-------------------MKTEPSIAEYTVRSKERICHCFSK 307
Query: 535 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 594
+ EA L+ + + ++ YDEAI+ Y A + ++ QI
Sbjct: 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIRE 367
Query: 595 DLSLLQIQMRDLE 607
L Q ++ +
Sbjct: 368 GLEKAQRLLKQSQ 380
Score = 70.9 bits (174), Expect = 5e-13
Identities = 49/409 (11%), Positives = 115/409 (28%), Gaps = 58/409 (14%)
Query: 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 93
G L G+ +A + D +++ ++ + + K A+ ++ +
Sbjct: 32 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91
Query: 94 DNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNIL 153
D L ++ L+ + ++ P++ +
Sbjct: 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS----------- 140
Query: 154 EAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGA 213
+ + L Q++ SGD A+ LD+ E + E
Sbjct: 141 ---------------DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE 185
Query: 214 LKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATV 273
+K G+ +A+ ++ + +NT + K+ + +S+ +
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD------HELSLSEVREC-- 237
Query: 274 PKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEA 333
L L+ D +K V L + S + D Y
Sbjct: 238 ---LKLDQ----------DHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESV 283
Query: 334 LSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFV 393
+ + E A + + + ++A+ + + P +
Sbjct: 284 M----------KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333
Query: 394 TKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEA 442
+ Y EA + + AQ + D+ I K ++
Sbjct: 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR 382
Score = 65.1 bits (159), Expect = 3e-11
Identities = 45/343 (13%), Positives = 102/343 (29%), Gaps = 44/343 (12%)
Query: 330 YVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLI 389
+ +G L E + A + + L + G AL+ +AA+D P
Sbjct: 2 HHHHHHSSG-VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY 60
Query: 390 ELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKF 449
+ + ++ G A L + L + +L+ + EAE+ K
Sbjct: 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120
Query: 450 TR------EGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYK 503
+ E A L + M AL G + + +
Sbjct: 121 LKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA--------FLD----- 167
Query: 504 NGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYG 563
K + AE ++ G +A ++ + + ++
Sbjct: 168 ------KILEVCVWDAE---LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218
Query: 564 LLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG---------YREGVS 614
L ++ ++ R LK + D+ + ++ + +E Y + S
Sbjct: 219 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278
Query: 615 ----AMENLNEMQCMWFQTEC--ALAYQRLGRWGDTLKKCHEV 651
M+ + +++ + + + + ++ C EV
Sbjct: 279 KYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321
Score = 63.6 bits (155), Expect = 1e-10
Identities = 34/257 (13%), Positives = 72/257 (28%), Gaps = 43/257 (16%)
Query: 3 YEHKQYKNGLKFAKQIL-TNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
+ Y + F +IL AE ++ G +A ++ + +
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAE---LRELRAECFIKEGEPRKAISDLKAASKLKNDN 210
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121
++ L ++ ++ R LK + D+ + Q++ L E+ +
Sbjct: 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK----QVKKLNKLIESAEE 266
Query: 122 LFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVI 181
L + A + + S
Sbjct: 267 LIRDG------------------RYTDA---TSKYESVMKTEPSIAEYTVRSKERICHCF 305
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETY-------GALKLKLGQYNEAMKHYESLIER 234
EA++ L +E L Y+EA++ YE+ E
Sbjct: 306 SKDEKPVEAIRVCSE-------VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358
Query: 235 NQENTLYYNKLVEAKQL 251
N+ + L +A++L
Sbjct: 359 NENDQQIREGLEKAQRL 375
Score = 62.0 bits (151), Expect = 3e-10
Identities = 51/429 (11%), Positives = 116/429 (27%), Gaps = 72/429 (16%)
Query: 3 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
Q + L F + +P + +G+ + A + + ++ +
Sbjct: 37 LAAGQLADALSQFHAAVDGDPDNYI---AYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121
G L K DEA ++ LK + S L
Sbjct: 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL---------------- 137
Query: 122 LFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVI 181
++ + A+ D+ A + K +V +EL ++
Sbjct: 138 ---IKSDEMQRLRSQALNAFGSGDYTAA---IAFLDKILEVCVWD----AELRELRAECF 187
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLY 241
G+ +A+ L + +D L +LG + ++ ++ +Q++
Sbjct: 188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 247
Query: 242 YNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKY-----LR 296
+ + K+L + + L +Y A KY
Sbjct: 248 FAHYKQVKKLNKLIESAEELIR-DGRYTDA-------------------TSKYESVMKTE 287
Query: 297 HGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLW 356
+ + +S EK + + E L ++EP +
Sbjct: 288 PSIAEYTVRSKERICHCFSKDEK---PVEAIRVCSEVL------------QMEPDNV--N 330
Query: 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQ 416
A+ Y +A+ A +H ++ + + + +
Sbjct: 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390
Query: 417 SLDTADRYI 425
+ + I
Sbjct: 391 KRNAKKQEI 399
Score = 59.7 bits (145), Expect = 2e-09
Identities = 60/458 (13%), Positives = 123/458 (26%), Gaps = 96/458 (20%)
Query: 183 DSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENT 239
+G L +A+ + Y + L +G+ A+ +I+ + T
Sbjct: 38 AAGQLADALSQFHAA---VDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT 94
Query: 240 LYYNKLVEA-KQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHG 298
+ + D+ + P K + D E+ +
Sbjct: 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD----EMQRLRSQA 150
Query: 299 FHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVY 358
+ + + L EV A +
Sbjct: 151 LNA----------------FGSGDYTAAIAFLDKIL------------EVCVWDA--ELR 180
Query: 359 HYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL 418
A+ + G+ KA++ + AA E F +Y GD + + E L
Sbjct: 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240
Query: 419 DTADRYINSKCAKYMLRANLIKEAEETCSKFTREG---------VSAMENLNEMQCMWFQ 469
D + +C + + + + E+ + R+G S M+ + +
Sbjct: 241 DQD----HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296
Query: 470 TEC--ALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAM 527
++ + + + + ++ C EV + P L
Sbjct: 297 SKERICHCFSKDEKPVEAIRVCSEV-------------------LQMEPDNVN---ALKD 334
Query: 528 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKK---------------- 571
+ +EA + ++ QR K+
Sbjct: 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394
Query: 572 -YDEAIKCYRN-ALKWEHDNIQIMRDLSLLQIQMRDLE 607
E IK YR AL+W DN Q + + + D+
Sbjct: 395 KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIA 432
Score = 55.1 bits (133), Expect = 4e-08
Identities = 38/264 (14%), Positives = 75/264 (28%), Gaps = 48/264 (18%)
Query: 3 YEHKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
+ + + + K E LG E + VR L+ D
Sbjct: 188 IKEGEPRKAISDLKAASKLKNDNTE---AFYKISTLYYQLGDHELSLSEVRECLKLDQDH 244
Query: 62 HVCWHVYGLLQRSDK------------KYDEAIKCYRNALKWEHDNIQIMRDL------S 103
C+ Y +++ +K +Y +A Y + +K E +
Sbjct: 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304
Query: 104 LLQIQMRD--LEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQ 161
+ + + E + P + A AY + +D A ++ + Q+
Sbjct: 305 FSKDEKPVEAIRVCSEV----LQMEPDNVNALKDRAEAYLIEEMYDEA---IQDYETAQE 357
Query: 162 VTNSYDFEHSEL-------------LLYQSMVIQDSGDLEEAVKHLDRFKEQIH-DKLTV 207
+ L Y+ + ++ + +E +K + Q H D
Sbjct: 358 HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN 417
Query: 208 EETYGALKLKLGQYNEAMKHYESL 231
EE + K A E L
Sbjct: 418 EEEKKKAEKKFIDIAAA---KEVL 438
Score = 52.4 bits (126), Expect = 3e-07
Identities = 46/318 (14%), Positives = 92/318 (28%), Gaps = 57/318 (17%)
Query: 356 WVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA 415
G +A + + P+ E + ++ K E + +A
Sbjct: 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK----SDEMQRLRSQA 150
Query: 416 QSLDTADRY------------INSKCAK-YMLRANL------IKEAEETCSKFTREGVSA 456
+ + Y + A+ LRA ++A ++
Sbjct: 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210
Query: 457 MENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNP 516
E ++ + Y +LG +L + E + +HK+ K K++
Sbjct: 211 TEAFYKI---------STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL---- 257
Query: 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCW-HVY---GLLQRSDKKY 572
L L GR +A ++ + D+K
Sbjct: 258 ------NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311
Query: 573 DEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG----YREGVS-------AMENLNE 621
EAI+ L+ E DN+ ++D + + + Y E L +
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371
Query: 622 MQCMWFQTECALAYQRLG 639
Q + Q++ Y+ LG
Sbjct: 372 AQRLLKQSQKRDYYKILG 389
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 71.0 bits (175), Expect = 3e-13
Identities = 81/480 (16%), Positives = 151/480 (31%), Gaps = 100/480 (20%)
Query: 133 WIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVK 192
+ A + DF+ A R Q+ + +++ +LL S + L+ +
Sbjct: 2 PMELAHREYQAGDFE------AAERHCMQLWR-QEPDNTGVLLLLSSIHFQCRRLDRSAH 54
Query: 193 HLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAK 249
I + E Y G + + GQ EA++HY + + Y L A
Sbjct: 55 F---STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111
Query: 250 QLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVN 309
+ + + Y A L N + + +
Sbjct: 112 VAAGD------MEGAVQAYVSA-----LQYN--------------------PDLYCVRSD 140
Query: 310 LRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLG 369
L +L + +++ Y++A+ E +P A + L ++ G
Sbjct: 141 LGNLLKALGR---LEEAKACYLKAI------------ETQPNFA--VAWSNLGCVFNAQG 183
Query: 370 DTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL--DTADRYINS 427
+ A+++ A+ P ++ ++ G + K A A A SL + A + N
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 428 KCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLK 487
C Y LI A +T + A+E Q AY L + LK
Sbjct: 244 ACVYYEQ--GLIDLAIDTYRR-------AIE---------LQPHFPDAYCNLA---NALK 282
Query: 488 KCHEVDR--KCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYV 545
+ V CY + P +A+ +L G EEA
Sbjct: 283 EKGSVAEAEDCYN-----------TALRLCPTHAD---SLNNLANIKREQGNIEEAVRLY 328
Query: 546 RRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 605
R+ L + + + K EA+ Y+ A++ ++ +M+D
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
Score = 71.0 bits (175), Expect = 3e-13
Identities = 35/247 (14%), Positives = 82/247 (33%), Gaps = 17/247 (6%)
Query: 3 YEHKQYKNGLKFAKQIL-TNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
Y+ ++ + Q+ P L + R + + + ++ +
Sbjct: 10 YQAGDFEAAERHCMQLWRQEPDNTG---VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121
+ G + + + EAI+ YR+AL+ + D I +L+ + D+EG +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 122 LFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVI 181
P L + A + K + ++ S L V
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEA---KACYLKAIETQPNFAVAWSNL----GCVF 179
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQEN 238
G++ A+ H F++ + + Y G + + ++ A+ Y + + +
Sbjct: 180 NAQGEIWLAIHH---FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236
Query: 239 TLYYNKL 245
+ + L
Sbjct: 237 AVVHGNL 243
Score = 63.7 bits (156), Expect = 8e-11
Identities = 35/215 (16%), Positives = 70/215 (32%), Gaps = 15/215 (6%)
Query: 35 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 94
G E A + + R + + + + ++ D + A+K
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 95 NIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILE 154
+ +L + + L+ E L+P +I A A D + A ++
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA---VQ 122
Query: 155 AFRKTQQVTNSYDFEHSEL-LLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY-- 211
A+ Q S+L L +++ G LEEA + + I + +
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKAL-----GRLEEAKAC---YLKAIETQPNFAVAWSN 174
Query: 212 -GALKLKLGQYNEAMKHYESLIERNQENTLYYNKL 245
G + G+ A+ H+E + + Y L
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209
Score = 59.1 bits (144), Expect = 2e-09
Identities = 38/239 (15%), Positives = 90/239 (37%), Gaps = 24/239 (10%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
+ K I T P +A + G N G A + + + D + G + +
Sbjct: 158 YLKAIETQPNFAV---AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG----YRETRYQLFMLRPTQ 129
+ +D A+ Y AL ++ + +L+ + + ++ YR + L+P
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR----RAIELQPHF 270
Query: 130 RASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEE 189
++ A A A + + ++ H++ L + + ++ G++EE
Sbjct: 271 PDAYCNLANALKEKGSVAEA---EDCYNTALRL----CPTHADSLNNLANIKREQGNIEE 323
Query: 190 AVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTLYYNKL 245
AV+ +++ + + ++ + G+ EA+ HY+ I + Y+ +
Sbjct: 324 AVRL---YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Score = 58.3 bits (142), Expect = 4e-09
Identities = 72/414 (17%), Positives = 121/414 (29%), Gaps = 81/414 (19%)
Query: 212 GALKLKLGQYNEAMKHYESLIERNQENTLYYNKL-VEAKQLTNNDDIFQLLTHYISKYPK 270
+ + G + A +H L + +NT L Q D T I + P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 271 -ATVPKRLSLNYVSGDQFRTEIDKY-----LRHGFHKGVPPLFVNLRSLYSNTEKCKIIQ 324
A L Y Q + I+ Y L+ F ++NL + ++
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF----IDGYINLAAALVAAGD---ME 118
Query: 325 DLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDH 384
V++YV AL + P V L LG +A AI+
Sbjct: 119 GAVQAYVSAL------------QYNPDLY--CVRSDLGNLLKALGRLEEAKACYLKAIET 164
Query: 385 TPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL--DTADRYINSKCAKYMLRANLIK-- 440
P + G ++ G++ A ++A +L + D YIN N++K
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN--------LGNVLKEA 216
Query: 441 ----EAEETCSKFTR---EGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVD 493
A + NL A Y G +
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNL------------ACVYYEQGLIDLAID------ 258
Query: 494 RKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDL 553
Y + I P + + L G EA + LR
Sbjct: 259 --TYR-----------RAIELQPHFPD---AYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 554 KSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 607
+ ++R +EA++ YR AL+ + +L+ + Q L+
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356
Score = 43.7 bits (104), Expect = 1e-04
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 3/91 (3%)
Query: 21 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 80
P +A+ +L G EEA R+ L + + + K E
Sbjct: 301 CPTHAD---SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
Query: 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 111
A+ Y+ A++ ++ +M+D
Sbjct: 358 ALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
Score = 42.1 bits (100), Expect = 5e-04
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 3/132 (2%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
+ + I P + + L G EA + LR + ++R
Sbjct: 260 YRRAIELQPHFPD---AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316
Query: 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133
+EA++ YR AL+ + +L+ + Q L+ + + PT ++
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
Query: 134 IGFAMAYHLLHD 145
+ D
Sbjct: 377 SNMGNTLKEMQD 388
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 71.8 bits (176), Expect = 4e-13
Identities = 79/616 (12%), Positives = 163/616 (26%), Gaps = 133/616 (21%)
Query: 77 KYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETR--YQLFMLRPTQRASWI 134
+Y A L + D L Y + L A
Sbjct: 99 QYKCAAFVGEKVLDITGNP----NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRY 154
Query: 135 GFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHL 194
A L+D+ A N+L ++ +++QD G EA
Sbjct: 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEK----------NANKLLMQDGGIKLEASMCY 204
Query: 195 DRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNN 254
R G + L ++ A + Y+ + + + +++LV LT +
Sbjct: 205 LR---------------GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTAD 249
Query: 255 DDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLY 314
++ +L S Y K E +LR L++ +
Sbjct: 250 EEWDLVLKLNYSTYSK-------------------EDAAFLRS--------LYMLKLNKT 282
Query: 315 SNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKA 374
S+ ++ + E Y+ +++ S + A +
Sbjct: 283 SHEDELRRA----EDYLSSINGLEKSS--------------DLLLCKADTLFVRSRFIDV 324
Query: 375 LNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL--DTADRYINSKCAKY 432
L ++ P ++++ +G+ + Y ++ + A ++
Sbjct: 325 LAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384
Query: 433 MLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEV 492
+ I EA SK + + A+ + E
Sbjct: 385 CVN--KISEARRYFSKSST----------------MDPQFGPAWIGFA---HSFAIEGEH 423
Query: 493 DR--KCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR 550
D+ Y A ++ G+ LG A EY++
Sbjct: 424 DQAISAYTT---------AARL--FQGTHL---PYLFLGMQHMQLGNILLANEYLQSSYA 469
Query: 551 NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM----RDL 606
+ + G++ + AI ++NAL + + + R L
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529
Query: 607 EGYREGVSAMENLNEMQCMWFQTECALA--YQRLGRWGD---TLKKCHEVDRHFSEIIED 661
+ Y + A+ + A+A Y G L + + +
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM---- 585
Query: 662 QFDFHTYCMRKMTLRS 677
+ K L
Sbjct: 586 -----ASDLLKRALEE 596
Score = 65.2 bits (159), Expect = 4e-11
Identities = 33/282 (11%), Positives = 81/282 (28%), Gaps = 43/282 (15%)
Query: 1 KCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK 60
K + + + I K ++ L K TL R + + L D
Sbjct: 281 KTSHEDELRRAEDYLSSINGLEKSSD---LLLCKADTLFVRSRFIDVLAITTKILEIDPY 337
Query: 61 SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRY 120
+ + ++ + ++ + + + + + + + + R
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397
Query: 121 QLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRK-----------------TQQVT 163
+ + P +WIGFA ++ + + D A + A+
Sbjct: 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQA---ISAYTTAARLFQGTHLPYLFLGMQHMQL 454
Query: 164 NSYDF-------------EHSELLLYQSMVIQDSGDLEEAVKHLDR----FKEQIHDKLT 206
+ LL +V + D++ A+ H K+ ++
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
Query: 207 VEETY---GALKLKLGQYNEAMKHYESLIERNQENTLYYNKL 245
T+ G KL Y+ A+ + + + + +
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556
Score = 63.3 bits (154), Expect = 2e-10
Identities = 75/589 (12%), Positives = 148/589 (25%), Gaps = 110/589 (18%)
Query: 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
+QYK +++L LA C G A + + +S
Sbjct: 94 ALMQQQYKCAAFVGEKVLDITGNPNDAFWLA---QVYCCTGDYARAKCLLTKE-DLYNRS 149
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121
C ++ + A+ + R E
Sbjct: 150 SACRYLAAFCLVKLYDWQGALNLLGETNPF------------------RKDEKNANKLLM 191
Query: 122 LFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVI 181
+ + Y L +FD A E +++ V ++ +E + L+ ++
Sbjct: 192 QDGGIKLEASMCYLRGQVYTNLSNFDRA---KECYKEALMV-DAKCYEAFDQLVSNHLLT 247
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGAL--KLKLGQYNEAMKHYESLIERNQENT 239
D + + V L+ D + Y K + Y S I ++++
Sbjct: 248 AD--EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305
Query: 240 -LYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHG 298
L K + D+ + T + P +D Y H
Sbjct: 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYN-------------------LDVYPLHL 346
Query: 299 FHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVY 358
+ + + L + + + P A+ W
Sbjct: 347 -------------ASLHESGE---KNKLYLISNDLV------------DRHPEKAVTW-- 376
Query: 359 HYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL 418
+ +Y + +A Y + + P ++ + G+ +A A L
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436
Query: 419 --DTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAY 476
T Y+ L I A E + + E +
Sbjct: 437 FQGTHLPYLFLGMQHMQL--GNILLANEYLQS-------SYALFQYDPLLLN--ELGVVA 485
Query: 477 QRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCL 535
+ ++N L K+ + +A T A G L
Sbjct: 486 FNKSDMQTAI-------------NHFQNALLLVKKTQSNEKPWA---ATWANLGHAYRKL 529
Query: 536 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
+ A + + +GL L+ K AI +L
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 68.8 bits (169), Expect = 1e-12
Identities = 41/300 (13%), Positives = 85/300 (28%), Gaps = 51/300 (17%)
Query: 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417
+ L + G AL+ +AA+D P + + ++ G A L + +
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 418 LDTADRYINSKCAKYMLRANLIKEAEETCSKFTR------EGVSAMENLNEMQCMWFQTE 471
L + +L+ + EAE+ K + E A L + M
Sbjct: 66 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRS 125
Query: 472 CALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLT 531
AL + + + K + AE ++
Sbjct: 126 QALDAFDGADYTAAIT--------FLD-----------KILEVCVWDAE---LRELRAEC 163
Query: 532 LNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 591
G +A ++ + + ++ L ++ ++ R LK + D+ +
Sbjct: 164 FIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 223
Query: 592 IMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEV 651
+ +++ + E A R GR+ D K V
Sbjct: 224 -----------------------CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 260
Score = 65.8 bits (161), Expect = 1e-11
Identities = 32/257 (12%), Positives = 70/257 (27%), Gaps = 43/257 (16%)
Query: 3 YEHKQYKNGLKFAKQIL-TNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
++ Y + F +IL AE ++ G +A ++ + +
Sbjct: 131 FDGADYTAAITFLDKILEVCVWDAE---LRELRAECFIKEGEPRKAISDLKAASKLKSDN 187
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121
++ L ++ ++ R LK + D+ + ++
Sbjct: 188 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK--------------- 232
Query: 122 LFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVI 181
+ I A + A + + S
Sbjct: 233 -------KLNKLIESAEELIRDGRYTDA---TSKYESVMKTEPSVAEYTVRSKERICHCF 282
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETY-------GALKLKLGQYNEAMKHYESLIER 234
EA++ L +E L Y+EA++ YE+ E
Sbjct: 283 SKDEKPVEAIRICSEV-------LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335
Query: 235 NQENTLYYNKLVEAKQL 251
N+ + L +A++L
Sbjct: 336 NENDQQIREGLEKAQRL 352
Score = 65.0 bits (159), Expect = 2e-11
Identities = 42/397 (10%), Positives = 107/397 (26%), Gaps = 70/397 (17%)
Query: 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNA 88
E G L G+ +A + D +++ ++ + + K A+
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63
Query: 89 LKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDM 148
+ + D L ++ L+ + ++ P+++ +
Sbjct: 64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA------ 117
Query: 149 ACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVE 208
+ + L Q++ D D A+ LD+ E +
Sbjct: 118 --------------------DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157
Query: 209 ETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDD----IFQLLTHY 264
E +K G+ +A+ ++ + +NT + K+ + + +
Sbjct: 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217
Query: 265 ISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQ 324
+ + + + K + L + L +
Sbjct: 218 DQDHKRC----------------------FAHYKQVKKLNKLIESAEELI----RDGRYT 251
Query: 325 DLVESYVEALSKTGHFSLQDEGEVEP--ASALLWVYHYLAQHYDHLGDTMKALNYINAAI 382
D Y + + EP A + + + ++A+ + +
Sbjct: 252 DATSKYESVM------------KTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299
Query: 383 DHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLD 419
P + + Y EA + + AQ +
Sbjct: 300 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336
Score = 64.2 bits (157), Expect = 4e-11
Identities = 38/259 (14%), Positives = 79/259 (30%), Gaps = 27/259 (10%)
Query: 355 LWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDE 414
+ A D A+ +++ ++ EL + + G+ +A L
Sbjct: 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 415 AQSLDT--ADRYINSKCAKYMLRANLIKEAEETCSKFTR---EGVSAMENLNEMQCMWFQ 469
A L + + + Y L + + + + + + +++ +
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQL--GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237
Query: 470 TECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETL-AMK 528
E A R GR+ D K V + T P AE+
Sbjct: 238 IESAEELIRDGRYTDATSKYESV-------------------MKTEPSVAEYTVRSKERI 278
Query: 529 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 588
+ + EA L+ + + ++ YDEAI+ Y A + +
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338
Query: 589 NIQIMRDLSLLQIQMRDLE 607
+ QI L Q ++ +
Sbjct: 339 DQQIREGLEKAQRLLKQSQ 357
Score = 54.2 bits (131), Expect = 7e-08
Identities = 38/276 (13%), Positives = 77/276 (27%), Gaps = 46/276 (16%)
Query: 356 WVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA 415
G +A + + P+ E + ++ K E + +A
Sbjct: 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK----ADEMQRLRSQA 127
Query: 416 QSLDTADRY------------INSKCAK-YMLRANL------IKEAEETCSKFTREGVSA 456
Y + A+ LRA ++A ++
Sbjct: 128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187
Query: 457 MENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNP 516
E ++ + Y +LG +L + E + +HK+ K K++
Sbjct: 188 TEAFYKI---------STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL---- 234
Query: 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR----NDLKSHVCWHVYGLLQRSDKKY 572
L L GR +A ++ + D+K
Sbjct: 235 ------NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP 288
Query: 573 DEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG 608
EAI+ L+ E DN+ ++D + + +
Sbjct: 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE 324
Score = 51.9 bits (125), Expect = 4e-07
Identities = 31/277 (11%), Positives = 81/277 (29%), Gaps = 34/277 (12%)
Query: 6 KQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVC 64
+ K L +++ + +G L G+ +EA + ++ L+++
Sbjct: 51 GKSKAALPDLTKVIALKMDFTA---ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107
Query: 65 WHVYGLLQRSD---------------KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 109
L ++D Y AI L+ + ++ + I+
Sbjct: 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE 167
Query: 110 RDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRK--------TQQ 161
+ L+ ++ + Y+ L D +++ L R+ +
Sbjct: 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS---LSEVRECLKLDQDHKRC 224
Query: 162 VTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDR-FKEQIHDKLTVEETY---GALKLK 217
+ + L+ + + G +A + K + + K
Sbjct: 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK 284
Query: 218 LGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNN 254
+ EA++ +++ +N EA +
Sbjct: 285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321
Score = 40.3 bits (95), Expect = 0.002
Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 14/133 (10%)
Query: 523 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNA 582
E G L G+ +A + D +++ ++ + + K A+
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63
Query: 583 LKWEHDNIQIMRDLSLLQIQMRDLEG--------------YREGVSAMENLNEMQCMWFQ 628
+ + D L ++ L+ +E A L + M
Sbjct: 64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123
Query: 629 TECALAYQRLGRW 641
AL +
Sbjct: 124 RSQALDAFDGADY 136
Score = 39.2 bits (92), Expect = 0.004
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 1/102 (0%)
Query: 13 KFAKQILTNPKYAEHGETL-AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLL 71
K+ + T P AE+ + + EA L+ + +
Sbjct: 256 KYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315
Query: 72 QRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 113
++ YDEAI+ Y A + ++ QI L Q ++ +
Sbjct: 316 YLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357
Score = 35.7 bits (83), Expect = 0.044
Identities = 42/326 (12%), Positives = 90/326 (27%), Gaps = 74/326 (22%)
Query: 212 GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYIS--KYP 269
G L LK G+ +EA ++ +++ N + + + Y
Sbjct: 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137
Query: 270 KATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNT-EKCKIIQDLVE 328
A T +DK L LR L + K + +
Sbjct: 138 AA----------------ITFLDKILEVC------VWDAELRELRAECFIKEGEPRKAIS 175
Query: 329 SYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAI----DH 384
A +++ + ++ ++ Y LGD +L+ + + DH
Sbjct: 176 DLKAAS------------KLKSDNT--EAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221
Query: 385 TPTLIELFVTK--------GRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRA 436
K G +A + + + +
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS--KERIC 279
Query: 437 NL------IKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGD---TLK 487
+ EA CS+ ++ + + + A AY + + +
Sbjct: 280 HCFSKDEKPVEAIRICSE-------VLQ-MEP-DNVNALKDRAEAYLIEEMYDEAIQDYE 330
Query: 488 KCHEVDRKCYEHKQYKNGLKFAKQIL 513
E + +Q + GL+ A+++L
Sbjct: 331 AAQEHNE---NDQQIREGLEKAQRLL 353
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.5 bits (169), Expect = 3e-12
Identities = 86/694 (12%), Positives = 190/694 (27%), Gaps = 178/694 (25%)
Query: 75 DKKYDEAIKCYRNALKWEHDNIQ-IMRDLSLLQIQ--MRDLEGYRETRYQLFMLRPTQRA 131
D + E Y++ L + + +Q + + E + +
Sbjct: 8 DFETGEHQYQYKDIL---SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 132 SWIGFAMAYHLLHDFDMAC----NILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL 187
L F +++ F + N Y F S ++ Q S
Sbjct: 65 --------LRL---FWTLLSKQEEMVQKFVEEVLRIN-YKFLMSP---IKTEQRQPSMMT 109
Query: 188 EEAVKHLDRFKE--QIHDKLTV--EETYGALKLKL-----GQY---------------NE 223
++ DR Q+ K V + Y L+ L + +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 224 AMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNY-V 282
Y+ ++ + +++ L + + L P T S N +
Sbjct: 170 VCLSYK--VQCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 283 SGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTE------KCKIIQDLV----ESYVE 332
+ E+ + L+ ++ L V L ++ + CKI L+ + +
Sbjct: 226 RIHSIQAELRRLLKSKPYENC--LLV-LLNVQNAKAWNAFNLSCKI---LLTTRFKQVTD 279
Query: 333 ALS--KTGHFSLQD--EGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTL 388
LS T H SL L L ++ L + L + P
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSL-----LLKY---LDCRPQDLP--REVLTTNPRR 329
Query: 389 IELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSK 448
+ + + + +K ++ + + +N L ++ + S
Sbjct: 330 LSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNV------LEPAEYRKMFDRLSV 380
Query: 449 FTREGVSAMENLNEMQCMWFQ--TECALAYQRLGRWGDTLKKCHE---VDRKCYEHKQYK 503
F L + +WF + + K H+ V+++ E
Sbjct: 381 F-PPSAHIPTIL--LSLIWFDVIKSDVM---------VVVNKLHKYSLVEKQPKESTISI 428
Query: 504 NGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK--------- 554
+ ++ +YA H + + Y + +DL
Sbjct: 429 PSIYLELKVKLENEYALHRSIV--------------DHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 555 SHVCWHVYGLLQRSDKKYDEAIKCYRNALKW-----EHDNIQIMRDLSLLQIQMRDLEGY 609
SH+ H+ + ++ + + ++ HD+ S+L ++ L+ Y
Sbjct: 475 SHIGHHLKNIEH--PERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNT-LQQLKFY 530
Query: 610 REGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEIIEDQFDFHTYC 669
+ + + D + ++ DF
Sbjct: 531 KPYIC-----------------------------------DNDPKYERLVNAILDFLPKI 555
Query: 670 MRKMTLRSYVRLLRLEDVLRSHPFYYTAARCAIQ 703
+ Y LLR+ + + A + +Q
Sbjct: 556 EENLICSKYTDLLRIALMAEDEAIFEEAHK-QVQ 588
Score = 60.3 bits (145), Expect = 2e-09
Identities = 81/555 (14%), Positives = 148/555 (26%), Gaps = 163/555 (29%)
Query: 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGR--KEEAYEYVRRGLRNDL 59
KQ + KF +++L Y M + Y R L ND
Sbjct: 70 TLLSKQEEMVQKFVEEVL-RINYK-----FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 60 KSHVCWHVY----------GLLQRSDKKY--------------------DEAIKCYR-NA 88
+ ++V LL+ K ++C
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 89 LKW-----EHDNIQIMRDLSLLQIQM---------------RDLEGYRETRYQLFMLRPT 128
+ W + ++ L L Q+ + + +L +P
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 129 QRA---------SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYD------------ 167
+ + + F+++C IL R +QVT+
Sbjct: 244 ENCLLVLLNVQNAKA--------WNAFNLSCKILLTTRF-KQVTDFLSAATTTHISLDHH 294
Query: 168 ---FEHSELL-LYQSMVIQDSGDL-EEAVK----HLDRFKEQIHDKLTVEETYGALKLKL 218
E+ L + DL E + L E I D L + + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHVNC 352
Query: 219 GQYNEAMKH-YESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPK-ATVP-K 275
+ ++ L +++L +F P A +P
Sbjct: 353 DKLTTIIESSLNVLEPAEYRK--MFDRLS----------VF----------PPSAHIPTI 390
Query: 276 RLSL--NYVSGDQFRTEIDKYLRHGF-HKGVPPLFVNLRSLY-SNTEKCKIIQDLVESYV 331
LSL V ++K ++ K +++ S+Y K + L S V
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 332 EALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKA---------LNYINAAI 382
+ + F D P + Y ++ H ++ + ++ I
Sbjct: 451 DHYNIPKTFDSDDLI---PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 383 DHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKE- 441
H + +G + L+ Q L YI KY N I +
Sbjct: 508 RHD----------STAWNASGSI------LNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 442 ---AEETC--SKFTR 451
EE SK+T
Sbjct: 552 LPKIEENLICSKYTD 566
Score = 36.4 bits (83), Expect = 0.037
Identities = 24/168 (14%), Positives = 57/168 (33%), Gaps = 46/168 (27%)
Query: 46 EAYEYVRRGLRNDLK---------SHVCWHVYGLLQRSDKKYDEAIKCYRNALKW----- 91
+ Y + +DL SH+ H+ + ++ + + ++
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH--PERMTLFRMVFLD-FRFLEQKI 507
Query: 92 EHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHD--FDMA 149
HD+ S+L ++ L+ Y+ Y +D ++
Sbjct: 508 RHDSTAWNASGSILNT-LQQLKFYKP----------------------YICDNDPKYERL 544
Query: 150 CNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL-EEAVKHLDR 196
N + F + N ++++LL + ++ + + EEA K + R
Sbjct: 545 VNAILDFLPKIE-ENLICSKYTDLL--RIALMAEDEAIFEEAHKQVQR 589
Score = 35.6 bits (81), Expect = 0.062
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 19/115 (16%)
Query: 19 LTNPKYAEHGETLAMKGLTLNCLGRK---EEAYEYVRRGLRNDL------KSHVCWHVYG 69
L N ++ E M L L +K + + N L K ++C
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC----- 535
Query: 70 LLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG--YRETRYQL 122
+D KY+ + + L +N+ + LL+I + + + E Q+
Sbjct: 536 ---DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 65.4 bits (160), Expect = 2e-11
Identities = 33/264 (12%), Positives = 70/264 (26%), Gaps = 43/264 (16%)
Query: 22 PKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81
E+ + + + Y+ + D C V+ K +E
Sbjct: 16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANEL 75
Query: 82 IKCYRNALKWEHDNIQIMRDL-SLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140
+ N + + E R + L T +WI + ++
Sbjct: 76 FYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSF 135
Query: 141 HLLHDFDMACNILEAFRK-----------------TQQVTNSYDF-------------EH 170
+ + D A + A+ +TN+ E
Sbjct: 136 AVESEHDQA---MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192
Query: 171 SELLLYQSMVIQDSGDLEEAVKHLDR------FKEQIHDKLTVEETY---GALKLKLGQY 221
++ +V +G+ + A K E G + KL +Y
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 222 NEAMKHYESLIERNQENTLYYNKL 245
EA+ ++ + +N Y+ +
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAI 276
Score = 58.8 bits (143), Expect = 2e-09
Identities = 46/359 (12%), Positives = 95/359 (26%), Gaps = 54/359 (15%)
Query: 338 GHFSLQDEGEVEPASALL----WVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFV 393
G ++ E + + L V LA+ + + D + ++ P
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 394 TKGRIYKHAGDVLEAYKWLDEAQSLD--TADRYINSKCAKYMLRANLIKEAEETCSKFTR 451
E + + L + C Y++ + + A SK T
Sbjct: 61 VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY-YLMVGHKNEHARRYLSKATT 119
Query: 452 EGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDR--KCYEHKQYKNGLKFA 509
+ A+ G + E D+ Y
Sbjct: 120 ----------------LEKTYGPAWIAYGH---SFAVESEHDQAMAAYF----------- 149
Query: 510 KQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSD 569
+ GL + A + + L + H G++ +
Sbjct: 150 TAAQLMKGCH---LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN 206
Query: 570 KKYDEAIKCYRNALK--WEHDNIQIMRDLSLLQIQM----RDLEGYREGVSAMENLNEMQ 623
++ A K + +AL+ N + L + R L+ Y E A++ Q
Sbjct: 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE---ALDYHR--Q 261
Query: 624 CMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEIIE-DQFDFHTYCMRKMTLRSYVRL 681
+ + A Y +G + +F + + D + M + Y+
Sbjct: 262 ALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320
Score = 49.6 bits (119), Expect = 2e-06
Identities = 51/406 (12%), Positives = 106/406 (26%), Gaps = 97/406 (23%)
Query: 188 EEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENT-LYYNKLV 246
+ + + + + + L V + + K ++E++ + +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64
Query: 247 EAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPL 306
+L +++F L + YP + F G
Sbjct: 65 TLVELNKANELFYLSHKLVDLYP----------------------SNPVSW-FAVGC--Y 99
Query: 307 FVNLRSLYSNTEKC--KIIQDLVESYVEALSKTGHFSLQDEGEVEPA-----SALL---- 355
++ + + + K L ++Y A GH S E E + A +A
Sbjct: 100 YLMVGHKNEHARRYLSKATT-LEKTYGPAWIAYGH-SFAVESEHDQAMAAYFTAAQLMKG 157
Query: 356 --WVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLD 413
Y+ Y ++ A + + A+ P + G + G+ A KW
Sbjct: 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL 217
Query: 414 EAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECA 473
+A A + L NL
Sbjct: 218 DALEKIKAIGNEVTVDKWEPLLNNL----------------------------------G 243
Query: 474 LAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLN 533
++L ++ + L + + ++ P+ A T + G +
Sbjct: 244 HVCRKLKKYAEALD--------YHR-----------QALVLIPQNAS---TYSAIGYIHS 281
Query: 534 CLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCY 579
+G E A +Y L + G EA
Sbjct: 282 LMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
Score = 48.4 bits (116), Expect = 4e-06
Identities = 42/271 (15%), Positives = 84/271 (30%), Gaps = 38/271 (14%)
Query: 347 EVEPASALLW-----VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKH 401
++ P++ + W Y + + A Y++ A T ++ G +
Sbjct: 84 DLYPSNPVSWFAVGCYYLMVGHKNE------HARRYLSKATTLEKTYGPAWIAYGHSFAV 137
Query: 402 AGDVLEAYKWLDEAQSL--DTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMEN 459
+ +A A L + + N K AE S+ A+
Sbjct: 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT--NNSKLAERFFSQ-------ALSI 188
Query: 460 LNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYA 519
E + E + + G W K + + L+ K I
Sbjct: 189 APEDPFVMH--EVGVVAFQNGEWKTAEK-------------WFLDALEKIKAIGNEVTVD 233
Query: 520 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCY 579
+ L G L + EA +Y R+ L ++ + G + ++ A+ +
Sbjct: 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF 293
Query: 580 RNALKWEHDNIQIMRDLSL-LQIQMRDLEGY 609
AL D+ + L +++ + D E Y
Sbjct: 294 HTALGLRRDDTFSVTMLGHCIEMYIGDSEAY 324
Score = 43.4 bits (103), Expect = 2e-04
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 1/111 (0%)
Query: 6 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCW 65
K + + L+ K I + L G L + EA +Y R+ L ++ +
Sbjct: 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTY 273
Query: 66 HVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL-LQIQMRDLEGY 115
G + ++ A+ + AL D+ + L +++ + D E Y
Sbjct: 274 SAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAY 324
Score = 33.8 bits (78), Expect = 0.17
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 2 CYEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK 60
C + K+Y L + ++ P+ A T + G + +G E A +Y L
Sbjct: 246 CRKLKKYAEALDYHRQALVLIPQNAS---TYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302
Query: 61 SHVCWHVYGLLQRSDKKYDEAIKCY 85
+ G EA
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEAYIGA 327
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 1e-10
Identities = 90/630 (14%), Positives = 164/630 (26%), Gaps = 255/630 (40%)
Query: 154 EAFRKT-QQVTNSY--DFEHS---EL----LLYQSMVIQDS--GDLEEAVKH-LDRFKEQ 200
E F K + T + D E + EL L Y S +++ S G ++ + L F+
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 201 ------IHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNN 254
IH AL KL Q N+ + +N Y A+ +
Sbjct: 95 YLEGNDIH----------ALAAKLLQENDTTLVKTKELIKN-----YI----TARIMAK- 134
Query: 255 DDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRT--------EIDKYLRHGFHKGVPPL 306
+ K + L V + D Y
Sbjct: 135 -----------RPFDKKS-NSAL-FRAVGEGNAQLVAIFGGQGNTDDY------------ 169
Query: 307 FVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYD 366
F LR LY T ++ DL++ E LS+ ++ + E +
Sbjct: 170 FEELRDLY-QTYHV-LVGDLIKFSAETLSEL----IRTTLDAEK-------------VFT 210
Query: 367 HLGDTMKALNYINAA-----IDHTPT---LIEL-----FVTKGRIY-KHAGDVLEAYKWL 412
+ ++ L + + P LI + +V ++ G++ K
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 413 DEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTEC 472
+ ++ ++ A I E + + F A+ L + C
Sbjct: 271 --------------TGHSQGLVTAVAIAETD-SWESFFVSVRKAITVL-----FFIGVRC 310
Query: 473 ALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGET-----LAM 527
AY L+ E+ E L++
Sbjct: 311 YEAYPNTSLPPSILEDS-----------------------------LENNEGVPSPMLSI 341
Query: 528 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 587
LT + ++ L V + L N
Sbjct: 342 SNLTQEQV---QDYVNKTNSHLPAG--KQV--EI-SL---------------VNG----A 374
Query: 588 DNIQIM---RDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDT 644
N+ + + L L + +R
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKA-------------------------------------- 396
Query: 645 LKKCHEVDRH---FSE---IIEDQFD-----FHT-YCMRKMTLRSYVRLLRLEDVLRSHP 692
K +D+ FSE ++F FH+ L L+ +D+++++
Sbjct: 397 -KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL------LVPASDLI-NKDLVKNN- 447
Query: 693 FYYTAARCAIQVYLRLHDRPCTLDSEQQQQ 722
+ A I VY T D +
Sbjct: 448 VSFNAKDIQIPVY-------DTFDGSDLRV 470
Score = 41.2 bits (96), Expect = 0.001
Identities = 85/512 (16%), Positives = 135/512 (26%), Gaps = 218/512 (42%)
Query: 12 LKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR-NDLKSHVCWH--VY 68
L + ++ K + + L L L E Y L ND+ H
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLN---LCLTEF---ENCY------LEGNDI------HALAA 106
Query: 69 GLLQRSDK---KYDEAIKCYRNALKWEHDNIQIMRDLSLLQ-----------I---Q--- 108
LLQ +D K E IK Y A + +L + I Q
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 109 ------MRDLEGYRETRYQLF----------MLRPTQRA---------------SW---- 133
+RDL Y +T Y + L R W
Sbjct: 167 DDYFEELRDL--Y-QT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 134 ------------------IGFAMAYHLLHDFDMACNIL-----EAFRKTQQVTNSYDFEH 170
IG L H + + +L E + T H
Sbjct: 223 SNTPDKDYLLSIPISCPLIGV---IQLAH-YVVTAKLLGFTPGELRSYLKGATG-----H 273
Query: 171 SELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTV--------EETYG--ALKLKLGQ 220
S+ L+ ++ I ++ E F + +TV E Y +L + +
Sbjct: 274 SQGLV-TAVAIAETDSWES-------FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 221 YNEA--------M--------KHYESLIER-NQENTLYYNKLVEAKQ----LTNNDDIF- 258
+ M + + + + N L KQ L N
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH-------LPAGKQVEISLVNGAKNLV 378
Query: 259 -----QLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDK--------YLRHG--FHKGV 303
Q L KA P L DQ R + +L FH
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGL-------DQSRIPFSERKLKFSNRFLPVASPFH--- 428
Query: 304 PPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQ 363
S I +DLV++ V +K +Q P VY
Sbjct: 429 --------SHLLVPASDLINKDLVKNNVSFNAK----DIQ-----IP------VYDT--- 462
Query: 364 HYDHLGDTMKALNYINAAIDHTPTLIELFVTK 395
+D G ++ L + +I + +++ +
Sbjct: 463 -FD--GSDLRVL---SGSI--SERIVDCIIRL 486
Score = 37.0 bits (85), Expect = 0.029
Identities = 61/399 (15%), Positives = 110/399 (27%), Gaps = 150/399 (37%)
Query: 70 LLQRSD--KK-YDEAIKCYRNALKWEHDNIQ-IMRDLSLLQIQMRDLEGYRETRYQLFML 125
L + S + ++ A +++ + +I I+ + + E + R + +
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGF---SILDIVINNPVNLTIHFGGEKGKRIR-ENYS- 1689
Query: 126 RPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSG 185
AM + D + F++ + + SY F + LL + Q
Sbjct: 1690 -----------AMIFE--TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ--- 1733
Query: 186 DLEEAVKHLDRFKEQIHDKLTVEETYGALK-LK---LGQYNEAMK-HYESLIERNQENTL 240
A+ +E A + LK L + H SL E
Sbjct: 1734 ---PAL-------------TLME--KAAFEDLKSKGLIPADATFAGH--SLGE------- 1766
Query: 241 YYNKLV-EAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGF 299
Y L A ++ + + +++ Y + VP+ + R+
Sbjct: 1767 -YAALASLADVMS-IESLVEVV-FYRGMTMQVAVPR--------DELGRSNYGMI----- 1810
Query: 300 HKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSK-TGHFSLQDEGEVEPASALLWVY 358
+ P V Q+ ++ VE + K TG VE
Sbjct: 1811 --AINPGRVAA----------SFSQEALQYVVERVGKRTGWL-------VEIV------- 1844
Query: 359 HYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL 418
NY N + Y AGD L A L
Sbjct: 1845 -----------------NY-NVE--------------NQQYVAAGD-LRA---------L 1862
Query: 419 DTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAM 457
DT + + ++ I E S + E V
Sbjct: 1863 DTV-----TNVLNF-IKLQKIDIIELQKS-LSLEEVEGH 1894
Score = 32.3 bits (73), Expect = 0.77
Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 49/185 (26%)
Query: 47 AYEYVR-RGLRNDLKSHVCWHVYGLLQRSDKKYDE--AIKCYRNALKWEHDNIQI--MRD 101
A+E ++ +GL + H G E A+ + + E +++ R
Sbjct: 1743 AFEDLKSKGLIPA-DATFAGHSLG----------EYAALASLADVMSIE-SLVEVVFYRG 1790
Query: 102 LSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ- 160
+++ RD G + Y + + P + A F+ ++T
Sbjct: 1791 MTMQVAVPRDELG--RSNYGMIAINPGRVA--ASFSQE-----ALQYVVE--RVGKRTGW 1839
Query: 161 --QVTNSYDFEHSELLLYQSMVIQDSGD---LEEAVKHLDRFKEQ------IHDKLTVEE 209
++ N Y+ E+ Q V +GD L+ L+ K Q + L++EE
Sbjct: 1840 LVEIVN-YNVENQ-----Q-YVA--AGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
Query: 210 TYGAL 214
G L
Sbjct: 1891 VEGHL 1895
Score = 31.6 bits (71), Expect = 1.3
Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 24/107 (22%)
Query: 311 RSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVY-----------H 359
LY ++ + + + +++ + G FS+ D P + L ++ +
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFK--DTYG-FSILDIVINNPVN--LTIHFGGEKGKRIREN 1687
Query: 360 YLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVL 406
Y A ++ + D I I+ T ++ +L
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSY--------TFRSEKGLL 1726
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 61.5 bits (149), Expect = 4e-10
Identities = 47/461 (10%), Positives = 123/461 (26%), Gaps = 119/461 (25%)
Query: 6 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRR----------GL 55
+ + + +Q + T +GR + YV +
Sbjct: 72 ECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131
Query: 56 RNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGY 115
R + C + L+ + + A C+ AL+
Sbjct: 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE------------------------- 166
Query: 116 RETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLL 175
+P G A+A + L ++ + N ++ R+ ++ + L L
Sbjct: 167 ---------KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL 217
Query: 176 YQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERN 235
+ ++ + E K ++ E+ V + + + ++A++ + +E
Sbjct: 218 KLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI 277
Query: 236 QENTLYYNKL-------------VEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYV 282
N + ++ + + + +L+ H ++ KA N
Sbjct: 278 PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA-----DEAN-- 330
Query: 283 SGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSL 342
+ + L SL++ ++ ++ + + SK
Sbjct: 331 ------------------DNLFRVCSILASLHALADQ---YEEAEYYFQKEFSK------ 363
Query: 343 QDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNY------------------------I 378
E+ P + L Y + KA+++
Sbjct: 364 ----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIA 419
Query: 379 NAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLD 419
+ E + + + +A + +
Sbjct: 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460
Score = 59.2 bits (143), Expect = 2e-09
Identities = 54/436 (12%), Positives = 115/436 (26%), Gaps = 63/436 (14%)
Query: 186 DLEEAVKHLDRFKEQIHDKLTVEETY---------GALKLKLGQYNEAMKHYESLIERNQ 236
+L E LD F++++ + + LK GQ A++ E Q
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 237 ENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLR 296
+ ++ N ++ + + YV + +
Sbjct: 83 QEHADQAEIRSLVTWGNYAWVYYHM----GRLSDV-------QIYV---DKVKHVCEKFS 128
Query: 297 HGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLW 356
+ P L + + +AL E +P +
Sbjct: 129 SPYRIESPELDCEEGWTRLKCGG-NQNERAKVCFEKAL------------EKKPKNPEFT 175
Query: 357 V-YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKG----RIYKHAGDVLEAYKW 411
+ D+ + A++ + AI P L V ++ + + E K
Sbjct: 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL 235
Query: 412 LDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSK---FTREGVSAMENLNEMQCMWF 468
++EA + AK+ R + +A E K + +
Sbjct: 236 VEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI-------- 287
Query: 469 QTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMK 528
Y+ L++ ++ K N ++
Sbjct: 288 ----GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF---RVCSIL 340
Query: 529 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVY----GLLQRSDKKYDEAIKCYRNALK 584
+ EEA Y ++ +L ++ K D+AI + +K
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400
Query: 585 WEHDNIQIMRDLSLLQ 600
+ + + LQ
Sbjct: 401 INQKSREKEKMKDKLQ 416
Score = 48.0 bits (114), Expect = 7e-06
Identities = 70/528 (13%), Positives = 151/528 (28%), Gaps = 114/528 (21%)
Query: 41 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 100
L E+ Y + K+ +C ++ L+ + + A++C R A +
Sbjct: 31 LDDFEDKVFYRTEFQNREFKATMC-NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA 89
Query: 101 DLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKT- 159
++ L +W +A Y+ + ++ +
Sbjct: 90 EIRSL-------------------------VTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124
Query: 160 QQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLG 219
++ ++ Y E EL + LK
Sbjct: 125 EKFSSPYRIESPELDCEEGWTR--------------------------------LKCGGN 152
Query: 220 QYNEAMKHYESLIERNQENTLYYNKLVEA----KQLTNNDDIFQLLTHYISKYPK-ATVP 274
Q A +E +E+ +N + + L A + + L I P +
Sbjct: 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212
Query: 275 KRLSLNYVSGDQFRTEIDKYLRH-----GFHKGVPPLFVNLRSLYSNTEKCKIIQDLVES 329
L+L + E + + GV + + Y ++ +E
Sbjct: 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE---PDKAIEL 269
Query: 330 YVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLI 389
+AL E P +A +++ + Y + N + L+
Sbjct: 270 LKKAL------------EYIPNNA--YLHCQIGCCYRAKVFQVM--NLRENGMYGKRKLL 313
Query: 390 ELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKF 449
EL A L +A + + S A A+ +EAE K
Sbjct: 314 ELIG-------------HAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQK- 359
Query: 450 TREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTL---KKCHEVDRKCYEHKQYKNGL 506
+ E + + ++ + + ++++K E ++ K+ L
Sbjct: 360 ----EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL 415
Query: 507 K--FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRND 552
+ ++ N + E L + + ++A E RGL +
Sbjct: 416 QKIAKMRLSKNGADS---EALHVLAFLQELNEKMQQADEDSERGLESG 460
Score = 31.4 bits (71), Expect = 1.1
Identities = 13/119 (10%), Positives = 31/119 (26%), Gaps = 26/119 (21%)
Query: 3 YEHKQYKNGLKFAKQILT-NPKYAEHGET-LAMKGLTLNCLGRKEEAYEYVRRGLRNDLK 60
QY+ + ++ + L L + +++A + G++ + K
Sbjct: 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404
Query: 61 SHVCWHVYGLLQRSDKK------------------------YDEAIKCYRNALKWEHDN 95
S + LQ+ K +A + L+
Sbjct: 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 60.0 bits (146), Expect = 6e-10
Identities = 35/246 (14%), Positives = 82/246 (33%), Gaps = 15/246 (6%)
Query: 15 AKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS 74
A + LT+ + A+ L +G+ + LG + A + L ++ G+
Sbjct: 33 ASRALTDDERAQ---LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89
Query: 75 DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWI 134
+D A + + + L+ + + + + ++ + P +
Sbjct: 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSL 149
Query: 135 GFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHL 194
+A L + + + F K + + ++ + I + +E
Sbjct: 150 WLYLAEQKLDEKQAKEVLKQHFEK-----SDKEQWGWNIVEFYLGNISEQTLMERLKADA 204
Query: 195 DRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTL-YYNKLVEAKQ 250
+ + L+ ET G L LG + A ++ + N N + + L+E
Sbjct: 205 TDNTS-LAEHLS--ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 261
Query: 251 LTNNDD 256
L + D
Sbjct: 262 LGQDQD 267
Score = 51.5 bits (124), Expect = 3e-07
Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 14/219 (6%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
F++ + P E G+ L G + AYE L D + G+
Sbjct: 66 FSQALAIRPDMPE---VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 122
Query: 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133
+ A + + ++ L L + ++ D + +E Q F ++ W
Sbjct: 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFEKSDKEQWGW 181
Query: 134 IGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKH 193
+ + + + SE Y GDL+ A
Sbjct: 182 NIVEFYLGNISEQTLMERLKADATDNTS----LAEHLSETNFYLGKYYLSLGDLDSATAL 237
Query: 194 LDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYE 229
FK + + + + LGQ + + +
Sbjct: 238 ---FKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273
Score = 45.4 bits (108), Expect = 3e-05
Identities = 36/249 (14%), Positives = 68/249 (27%), Gaps = 17/249 (6%)
Query: 342 LQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKH 401
L + A + + YD LG A N + A+ P + E+F G
Sbjct: 32 LASRALTDDERA--QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89
Query: 402 AGDVLEAYKWLDEAQSL--DTADRYINSKCAKYMLRANLIKEAEETCSKFTR---EGVSA 456
AG+ AY+ D L ++N A Y K A++ F +
Sbjct: 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG--GRDKLAQDDLLAFYQDDPNDPFR 147
Query: 457 MENLN----EMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLK-FAKQ 511
L ++ + +++ + E +
Sbjct: 148 SLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDN 207
Query: 512 ILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKK 571
+E T G LG + A + + N++ + V L +
Sbjct: 208 TSLAEHLSE---TNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 264
Query: 572 YDEAIKCYR 580
+ +
Sbjct: 265 DQDDLAESD 273
Score = 35.0 bits (81), Expect = 0.064
Identities = 28/237 (11%), Positives = 59/237 (24%), Gaps = 59/237 (24%)
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQEN 238
+G+ + A + F + T + G G+ A + + + +
Sbjct: 88 TQAGNFDAAYEA---FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144
Query: 239 TLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHG 298
L A+Q + ++L + K K
Sbjct: 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE--------------------------- 177
Query: 299 FHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVY 358
+ + N + +++ L + S H S
Sbjct: 178 -----QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLS--------------ETN 218
Query: 359 HYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA 415
YL ++Y LGD A A+ + +++A L +
Sbjct: 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFV-------EHRYALLELSLLGQDQDD 268
Score = 34.2 bits (79), Expect = 0.12
Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 3/69 (4%)
Query: 516 PKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 575
K L L R E+ D + + G+L S A
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILA---SRALTDDERAQLLYERGVLYDSLGLRALA 62
Query: 576 IKCYRNALK 584
+ AL
Sbjct: 63 RNDFSQALA 71
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 59.2 bits (144), Expect = 9e-10
Identities = 21/260 (8%), Positives = 69/260 (26%), Gaps = 29/260 (11%)
Query: 3 YEHKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKEEAYEYV---RRGLRND 58
+++ Y ++ ++ + + L + + A + + +
Sbjct: 14 FKNNNYAEAIEVFNKLEAKKYNSPY---IYNRRAVCYYELAKYDLAQKDIETYFSKVNAT 70
Query: 59 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG---- 114
+ YG + + AI+ Y+ A+ + + + + +
Sbjct: 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQY 130
Query: 115 YRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSEL- 173
+ T + AY+ ++ A +F K ++ + +
Sbjct: 131 MEKQ----IRPTTTDPKVFYELGQAYYYNKEYVKA---DSSFVKVLELKPNIYIGYLWRA 183
Query: 174 LLYQSMVIQDSGDLEEAVKHLDRF-----KEQIHDKLTVEETY---GALKLKLGQYNEAM 225
+ A + ++ K + E +A
Sbjct: 184 RANAAQ--DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241
Query: 226 KHYESLIERNQENTLYYNKL 245
+++++ + N + L
Sbjct: 242 AAWKNILALDPTNKKAIDGL 261
Score = 50.0 bits (120), Expect = 9e-07
Identities = 20/187 (10%), Positives = 60/187 (32%), Gaps = 16/187 (8%)
Query: 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG---YRETRYQ 121
Y + Y EAI+ + ++++ I ++ ++ + ET +
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 122 LFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVI 181
+ A + + +A ++ ++ + + ++
Sbjct: 66 KVNATKAKSADFEYYGKILMKKGQDSLA---IQQYQAAVDRDTTRLDMYGQI----GSYF 118
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQEN 238
+ G+ A+++ ++QI T + + G +Y +A + ++E
Sbjct: 119 YNKGNFPLAIQY---MEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175
Query: 239 TLYYNKL 245
+ Y
Sbjct: 176 YIGYLWR 182
Score = 49.6 bits (119), Expect = 1e-06
Identities = 35/283 (12%), Positives = 88/283 (31%), Gaps = 27/283 (9%)
Query: 132 SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAV 191
+A +++ A +E F K + + + +++ + + A
Sbjct: 5 VEFRYADFLFKNNNYAEA---IEVFNKLEA----KKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 192 KHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA 248
K ++ + +++ + G + +K GQ + A++ Y++ ++R+ Y ++
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 249 -KQLTNNDDIFQLLTHYISKYPK-ATVPKRLSLNYVSGDQFRTEIDKY-----LRHGFHK 301
N Q + I V L Y ++ + L+ +
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI 177
Query: 302 GVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYL 361
G ++ + + Y + + + G + L+ Y+
Sbjct: 178 G----YLWRARANAAQDPDTKQGLAKPYYEKLIE------VCAPGGAKYKDELIEANEYI 227
Query: 362 AQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGD 404
A +Y D +KA + PT + +H
Sbjct: 228 AYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270
Score = 43.8 bits (104), Expect = 1e-04
Identities = 23/233 (9%), Positives = 54/233 (23%), Gaps = 35/233 (15%)
Query: 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA- 415
V A + +A+ N ++ + Y A K ++
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 416 QSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALA 475
++ + ++ + + A++ + T
Sbjct: 65 SKVNATKAKSAD----FEYYGKILMKKGQD--------SLAIQQYQ--AAVDRDTTRLDM 110
Query: 476 YQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNC 534
Y ++ G Y + ++ KQI + G
Sbjct: 111 YGQI---GSYF----------YNKGNFPLAIQYMEKQIRPTTTDP---KVFYELGQAYYY 154
Query: 535 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGL---LQRSDKKYDEAIKCYRNALK 584
+A + L ++ + Q D K A Y ++
Sbjct: 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207
Score = 43.4 bits (103), Expect = 1e-04
Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 7/115 (6%)
Query: 497 YEHKQYKNGLK----FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRND 552
YE +Y K + ++ + G L G+ A + + + D
Sbjct: 48 YELAKYDLAQKDIETYFSKVNATKAKSA---DFEYYGKILMKKGQDSLAIQQYQAAVDRD 104
Query: 553 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 607
+ G + + AI+ ++ + ++ +L ++
Sbjct: 105 TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159
Score = 40.3 bits (95), Expect = 0.001
Identities = 16/168 (9%), Positives = 47/168 (27%), Gaps = 7/168 (4%)
Query: 497 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555
+ Q ++ + + + + G G A +Y+ + +R
Sbjct: 85 MKKGQDSLAIQQYQAAVDRDTTRLD---MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141
Query: 556 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSA 615
++ G +K+Y +A + L+ + + +
Sbjct: 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPY 201
Query: 616 ME---NLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEIIE 660
E + ++ E A + + + + + D + I+
Sbjct: 202 YEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249
Score = 36.5 bits (85), Expect = 0.022
Identities = 35/243 (14%), Positives = 60/243 (24%), Gaps = 45/243 (18%)
Query: 356 WVYHYLAQHYDHLGDTMKALNYINA---AIDHTPTLIELFVTKGRIYKHAGDVLEAYKWL 412
++Y+ A Y L A I ++ T F G+I G A +
Sbjct: 38 YIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQY 97
Query: 413 DEAQSLDT--ADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQT 470
A DT D Y Y A + K + T
Sbjct: 98 QAAVDRDTTRLDMYGQIGSYFYNK--GNFPLAIQYMEK-------QIR---------PTT 139
Query: 471 ECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKG 529
+ LG + Y +K+Y F K + P A
Sbjct: 140 TDPKVFYELG-------------QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARAN 186
Query: 530 LTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVY--------GLLQRSDKKYDEAIKCYRN 581
+ ++ A Y + + + ++ +A ++N
Sbjct: 187 AAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246
Query: 582 ALK 584
L
Sbjct: 247 ILA 249
Score = 31.5 bits (72), Expect = 0.82
Identities = 6/49 (12%), Positives = 18/49 (36%)
Query: 559 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 607
Y + Y EAI+ + ++++ I ++ ++ +
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYD 54
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 61.0 bits (147), Expect = 9e-10
Identities = 25/196 (12%), Positives = 62/196 (31%), Gaps = 10/196 (5%)
Query: 20 TNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYD 79
+ P +A+ +L G EEA R+ L + + + K
Sbjct: 4 SCPTHAD---SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60
Query: 80 EAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMA 139
EA+ Y+ A++ ++ +M+D++G + + + P + A
Sbjct: 61 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120
Query: 140 YHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKE 199
+ + A + ++R + + + +Q D + + + +
Sbjct: 121 HKDSGNIPEA---IASYRTAL----KLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173
Query: 200 QIHDKLTVEETYGALK 215
+ D+L
Sbjct: 174 IVADQLEKNRLPSVHP 189
Score = 49.8 bits (118), Expect = 3e-06
Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 4/130 (3%)
Query: 21 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 80
+P +A+ + G TL + + A + R ++ + + + E
Sbjct: 73 SPTFADA---YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129
Query: 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQ-RASWIGFAMA 139
AI YR ALK + D +L+ + D Y E +L + Q + +
Sbjct: 130 AIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHP 189
Query: 140 YHLLHDFDMA 149
+H +
Sbjct: 190 HHSMLYPLSH 199
Score = 48.3 bits (114), Expect = 8e-06
Identities = 30/218 (13%), Positives = 60/218 (27%), Gaps = 29/218 (13%)
Query: 514 TNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYD 573
+ P +A+ +L G EEA R+ L + + + K
Sbjct: 4 SCPTHAD---SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60
Query: 574 EAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG----YREGVS-------AMENLNEM 622
EA+ Y+ A++ ++ +M+D++G Y + A NL +
Sbjct: 61 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120
Query: 623 QCMWFQTECALAYQR------------LGRWGDTLKKCHEVDRH---FSEIIEDQFDFHT 667
A+A R L+ + + +++ D
Sbjct: 121 HKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE 180
Query: 668 YCMRKMTLRSYVRLLRLEDVLRSHPFYYTAARCAIQVY 705
+ L L R C ++
Sbjct: 181 KNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKIN 218
Score = 44.0 bits (103), Expect = 1e-04
Identities = 37/319 (11%), Positives = 88/319 (27%), Gaps = 50/319 (15%)
Query: 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFM 124
+ ++R +EA++ YR AL+
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALE---------------------------------- 37
Query: 125 LRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS 184
+ P A+ A A L +++ +++ ++ +S + +++
Sbjct: 38 VFPEFAAAHSNLASVLQQQGKLQEA---LMHYKEAIRISPTFADAYSNM----GNTLKEM 90
Query: 185 GDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNK 244
D++ A++ R + ++ G EA+ Y + ++ + Y
Sbjct: 91 QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150
Query: 245 LVEAKQ----LTNNDDIFQLLTHYISKYPKA-----TVPKRLSLNYVSGDQFRTEIDKYL 295
L Q T+ D+ + L ++ + P L +S + +++
Sbjct: 151 LAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHG 210
Query: 296 RHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALL 355
K ++ S T H G P +
Sbjct: 211 NLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEV 270
Query: 356 WVYHYLAQHYDHLGDTMKA 374
+ Y + + A
Sbjct: 271 FCYALSPDDGTNFRVKVMA 289
Score = 39.4 bits (91), Expect = 0.004
Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 41/239 (17%)
Query: 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQ 416
+ LA G+ +A+ A++ P + + G + EA EA
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 417 SL--DTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECAL 474
+ AD Y N + ++ A + ++ + + + + + A
Sbjct: 71 RISPTFADAYSN--MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL---------AS 119
Query: 475 AYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNC 534
++ G + + Y + P + + L
Sbjct: 120 IHKDSGNIPEAI--------ASYR-----------TALKLKPDFP---DAYCNLAHCLQI 157
Query: 535 LGR---KEEAYEYVRRGLRNDLKSHVCWHV---YGLLQRSDKKYDEAIKCYRNALKWEH 587
+ +E + + + + L+ + V + +L + +AI L +
Sbjct: 158 VCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDK 216
Score = 39.0 bits (90), Expect = 0.005
Identities = 39/314 (12%), Positives = 80/314 (25%), Gaps = 25/314 (7%)
Query: 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQ 416
Y + + D AL AI P + I+K +G++ EA A
Sbjct: 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138
Query: 417 SL--DTADRYIN-SKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECA 473
L D D Y N + C + + E + + + + +
Sbjct: 139 KLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLS 198
Query: 474 LAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLN 533
+++ + + K +PK + + G +
Sbjct: 199 HGFRKAIAE-------------RHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSS 245
Query: 534 CLGRKEEAY---EYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNI 590
G ++ + + K + + + +
Sbjct: 246 DFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGK 305
Query: 591 QIMRDLSLLQIQMRDLEGY----REGVSAMENLNEMQCMWFQTECALAYQRLGRW-GDTL 645
R + ++ GY R + A+ +Q MW + D
Sbjct: 306 AADRIHQDGIHILVNMNGYTKGARNELFALR-PAPIQAMWLGYPGTSGALFMDYIITDQE 364
Query: 646 KKCHEVDRHFSEII 659
EV +SE +
Sbjct: 365 TSPAEVAEQYSEKL 378
Score = 35.9 bits (82), Expect = 0.052
Identities = 15/77 (19%), Positives = 35/77 (45%)
Query: 169 EHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHY 228
H++ L + + ++ G++EEAV+ + E + ++ + G+ EA+ HY
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 229 ESLIERNQENTLYYNKL 245
+ I + Y+ +
Sbjct: 67 KEAIRISPTFADAYSNM 83
Score = 29.0 bits (64), Expect = 7.1
Identities = 30/293 (10%), Positives = 75/293 (25%), Gaps = 54/293 (18%)
Query: 212 GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEA-KQLTNNDDIFQLLTHYISKYPK 270
+K + G EA++ Y +E E ++ L +Q + I P
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 271 ATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESY 330
+ N+ + + +Q ++ Y
Sbjct: 76 F--------------------------------ADAYSNMGNTLKEMQD---VQGALQCY 100
Query: 331 VEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIE 390
A+ ++ PA A LA + G+ +A+ A+ P +
Sbjct: 101 TRAI------------QINPAFADAH--SNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146
Query: 391 LFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEE----TC 446
+ + D + + + + S+ N + + + L +
Sbjct: 147 AYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIA 206
Query: 447 SKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEH 499
+ + + L++ + + + + H
Sbjct: 207 ERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSI 259
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 59.9 bits (145), Expect = 2e-09
Identities = 16/153 (10%), Positives = 42/153 (27%), Gaps = 4/153 (2%)
Query: 42 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 101
+R +R+ + V W + + + L + + +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 102 LSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQ 161
L ++ + Q P + A + A A+ + Q
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA---AAAYTRAHQ 119
Query: 162 VTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHL 194
+ + ++LL ++ + D L+ +
Sbjct: 120 LLPEEPYITAQLLNWR-RRLCDWRALDVLSAQV 151
Score = 50.2 bits (120), Expect = 2e-06
Identities = 19/144 (13%), Positives = 36/144 (25%), Gaps = 3/144 (2%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
+ P+ M +G V+RGL G ++
Sbjct: 12 LRAAVRHRPQDFV---AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW 68
Query: 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASW 133
+ +++ EA + A ++ I L E + L P +
Sbjct: 69 TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT 128
Query: 134 IGFAMAYHLLHDFDMACNILEAFR 157
L D+ + R
Sbjct: 129 AQLLNWRRRLCDWRALDVLSAQVR 152
Score = 49.8 bits (119), Expect = 2e-06
Identities = 17/134 (12%), Positives = 32/134 (23%), Gaps = 7/134 (5%)
Query: 508 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567
+ P+ M +G V+RGL G ++
Sbjct: 12 LRAAVRHRPQDFV---AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW 68
Query: 568 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG----YREGVSAMENLNEMQ 623
+ +++ EA + A ++ I L E Y + +
Sbjct: 69 TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT 128
Query: 624 CMWFQTECALAYQR 637
L R
Sbjct: 129 AQLLNWRRRLCDWR 142
Score = 49.8 bits (119), Expect = 2e-06
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 3/121 (2%)
Query: 21 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 80
+P + E +A G R EA +++ + G + +
Sbjct: 53 HPGHPE---AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEA 109
Query: 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140
A Y A + + I L + ++ D Q+ + FA
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
Query: 141 H 141
Sbjct: 170 E 170
Score = 44.5 bits (105), Expect = 1e-04
Identities = 11/130 (8%), Positives = 32/130 (24%), Gaps = 12/130 (9%)
Query: 536 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 595
+R +R+ + V W + + + L + + +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 596 LSLLQIQMRDLEG----YREGVSAMENLNEMQCMWFQTECALAYQRLGRWGD---TLKKC 648
L ++ + ++ A + A + G+ +
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL-----GHALEDAGQAEAAAAAYTRA 117
Query: 649 HEVDRHFSEI 658
H++ I
Sbjct: 118 HQLLPEEPYI 127
Score = 44.1 bits (104), Expect = 2e-04
Identities = 19/147 (12%), Positives = 37/147 (25%), Gaps = 22/147 (14%)
Query: 473 ALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTL 532
A A +G + GL +P + E +A G
Sbjct: 30 ADAELGMGDTTAGEM-------------AVQRGLAL------HPGHPE---AVARLGRVR 67
Query: 533 NCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQI 592
R EA +++ + G + + A Y A + + I
Sbjct: 68 WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127
Query: 593 MRDLSLLQIQMRDLEGYREGVSAMENL 619
L + ++ D + +
Sbjct: 128 TAQLLNWRRRLCDWRALDVLSAQVRAA 154
Score = 41.4 bits (97), Expect = 0.001
Identities = 25/201 (12%), Positives = 50/201 (24%), Gaps = 45/201 (22%)
Query: 78 YDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFA 137
+ R A++ RP +W+ A
Sbjct: 5 GPRELLQLRAAVR----------------------------------HRPQDFVAWLMLA 30
Query: 138 MAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRF 197
A + D A ++ + H E + V EA L +
Sbjct: 31 DAELGMGDTTAG---EMAVQRGLAL----HPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83
Query: 198 KEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNN--- 254
+ + + G GQ A Y + E +L+ ++ +
Sbjct: 84 SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA 143
Query: 255 -DDIFQLLTHYISKYPKATVP 274
D + + +++ A P
Sbjct: 144 LDVLSAQVRAAVAQGVGAVEP 164
Score = 37.9 bits (88), Expect = 0.013
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 2/103 (1%)
Query: 347 EVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVL 406
+ P L + +A + A D P + + G + AG
Sbjct: 51 ALHPGHPEAV--ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAE 108
Query: 407 EAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKF 449
A A L + YI ++ + R + + ++
Sbjct: 109 AAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151
Score = 35.6 bits (82), Expect = 0.063
Identities = 5/75 (6%), Positives = 15/75 (20%)
Query: 184 SGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYN 243
+ D + L +L +G + + + +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 244 KLVEAKQLTNNDDIF 258
+L +
Sbjct: 62 RLGRVRWTQQRHAEA 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 56.6 bits (136), Expect = 2e-08
Identities = 38/278 (13%), Positives = 88/278 (31%), Gaps = 28/278 (10%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRK-EEAYEYVRRGLRNDLKSHVCWHVYGLLQ 72
+ + + A+ L +KG LN EA + + ++ + + W+ G +
Sbjct: 91 MEEVLGSAQVEAQ---ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVY 147
Query: 73 RSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQL---------F 123
A C+ AL N +++LS++ Q++ G +R+ +
Sbjct: 148 WKKGDVTSAHTCFSGALT-HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206
Query: 124 MLRPTQRASWIGFAMAY--------HLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLL 175
+ SW AY A L A+ + ++V + + +L L
Sbjct: 207 QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA---LSAYAQAEKV-DRKASSNPDLHL 262
Query: 176 YQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERN 235
++ + + EA++ + ++ L L + ++ +
Sbjct: 263 NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKK 322
Query: 236 QENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATV 273
++ L A D +Q + +
Sbjct: 323 LQS--MLGSLRPAHLGPCGDGRYQSASGQKMTLELKPL 358
Score = 46.5 bits (110), Expect = 2e-05
Identities = 29/303 (9%), Positives = 72/303 (23%), Gaps = 54/303 (17%)
Query: 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAI 82
+ + + L + + + + + ++H Q ++ ++ +
Sbjct: 29 QMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTL 88
Query: 83 KCYRNALKWEHDNIQIMRDL-SLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYH 141
+ L Q + L + + L P +W Y
Sbjct: 89 QQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW 148
Query: 142 LLHDFDMA-----------------CNILEAFRKTQQVTNSYDFEHSE------------ 172
D A N+ R+ Q + H
Sbjct: 149 KKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208
Query: 173 --------------LLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALK 215
L Q+ ++A+ + ++ + + + L
Sbjct: 209 DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLH 268
Query: 216 LKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPK 275
Y EA++ + + + + + + LT + K PK
Sbjct: 269 KYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR------LTSLLESKGKTK-PK 321
Query: 276 RLS 278
+L
Sbjct: 322 KLQ 324
Score = 46.2 bits (109), Expect = 3e-05
Identities = 29/238 (12%), Positives = 59/238 (24%), Gaps = 31/238 (13%)
Query: 357 VYHYLAQHYDHLGD-TMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA 415
+ + D + +A ++ A+ P L+E + G +Y GDV A+ A
Sbjct: 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163
Query: 416 QSLD-TADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECAL 474
+ N M+ L ++ + S+ + V + +
Sbjct: 164 LTHCKNKVSLQN----LSMVLRQLQTDSGDEHSRHVMDSVRQAK-----LAVQMDVLDGR 214
Query: 475 AYQRLGR--------WGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLA 526
++ LG G K + Y + K +
Sbjct: 215 SWYILGNAYLSLYFNTGQNPKISQQAL-SAYA--------QAEKVDRKASSNPD---LHL 262
Query: 527 MKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
+ EA E + D L + ++
Sbjct: 263 NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320
Score = 40.8 bits (95), Expect = 0.001
Identities = 31/297 (10%), Positives = 82/297 (27%), Gaps = 42/297 (14%)
Query: 323 IQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAI 382
+ +++ + + F E + + + K L + +
Sbjct: 43 AKHVLQKLQGLVDRLYCFR-DSYFETHSVEDAGRKQQDVQEEME------KTLQQMEEVL 95
Query: 383 DHTPTLIELFVTKGRIYKHAGDVL-EAYKWLDEAQSL--DTADRYINSKCAKYMLRANLI 439
+ + KG+ D EA L +A L + + + + +
Sbjct: 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK--GDV 153
Query: 440 KEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEH 499
A S A+ + + ++ Q L + + + D
Sbjct: 154 TSAHTCFSG-------ALTH----------CKNKVSLQNLS----MVLRQLQTDSGDEHS 192
Query: 500 KQYKNGLKFAKQILT-NPKYAE----HGETLAMKGLTL-NCLGRKEEAYEYVRRGLRNDL 553
+ + ++ AK + + G ++A + + D
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 554 KSHVCWHVY---GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 607
K+ ++ L + ++ Y EA++ + A + + + L + L
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT 309
Score = 31.1 bits (70), Expect = 1.5
Identities = 35/248 (14%), Positives = 75/248 (30%), Gaps = 22/248 (8%)
Query: 186 DLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQEN-TLYYNK 244
L+ V L F++ + +VE+ + + + ++ E ++ Q K
Sbjct: 49 KLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLK 108
Query: 245 LVEAKQLTN-NDDIFQLLTHYISKYPK-ATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKG 302
+ + + LL+ + P+ +L Y + + H
Sbjct: 109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK 168
Query: 303 VPPLFVNL------RSLYSNTEKCKIIQDLVESYVEALSK-----TGHFSLQDEGEVEPA 351
NL S E + + D V A+ + L
Sbjct: 169 NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL--------G 220
Query: 352 SALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKW 411
+A L +Y Q+ + A + +L + + ++K+ EA +
Sbjct: 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEG 280
Query: 412 LDEAQSLD 419
+A +LD
Sbjct: 281 FSQAAALD 288
Score = 30.0 bits (67), Expect = 3.2
Identities = 5/76 (6%), Positives = 21/76 (27%)
Query: 517 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAI 576
+ + + L + + + + + ++H Q ++ ++ +
Sbjct: 29 QMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTL 88
Query: 577 KCYRNALKWEHDNIQI 592
+ L Q
Sbjct: 89 QQMEEVLGSAQVEAQA 104
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 54.5 bits (132), Expect = 3e-08
Identities = 28/225 (12%), Positives = 64/225 (28%), Gaps = 52/225 (23%)
Query: 22 PKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81
A+ +G + +EA E+ + K + + +Y+ A
Sbjct: 2 GSMAD---KEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETA 57
Query: 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYH 141
I +A++ RA + + ++
Sbjct: 58 ISTLNDAVE----------------------------------QGREMRADYKVISKSFA 83
Query: 142 LLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI 201
+ + L +KT + EH + ++ + E+ +K + +
Sbjct: 84 RIGNAYHK---LGDLKKTIEYYQKSLTEH-----RTADILTKLRNAEKELKK---AEAEA 132
Query: 202 HDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTLYYN 243
+ E G + A+K Y +I+R E+ Y+
Sbjct: 133 YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS 177
Score = 51.8 bits (125), Expect = 3e-07
Identities = 28/251 (11%), Positives = 65/251 (25%), Gaps = 34/251 (13%)
Query: 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417
+ A G+ A++ +N A++ + + + + G+ L +
Sbjct: 41 LNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE 100
Query: 418 LD-TADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAY 476
+ + LR ++ + E Y
Sbjct: 101 YYQKSLTEHRTADILTKLRN--AEKELKKAEAEAYVNPEKAEEARLE---------GKEY 149
Query: 477 QRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLG 536
W + + K Y + I P+ A + + L L
Sbjct: 150 FTKSDWPNAV--------KAYT-----------EMIKRAPEDA---RGYSNRAAALAKLM 187
Query: 537 RKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 596
EA + + D + Q + K+Y A++ A + +
Sbjct: 188 SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 247
Query: 597 SLLQIQMRDLE 607
+ Q+ + +
Sbjct: 248 EIDQLYYKASQ 258
Score = 47.9 bits (115), Expect = 4e-06
Identities = 28/246 (11%), Positives = 56/246 (22%), Gaps = 55/246 (22%)
Query: 3 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
Y+ +Q+ ++ + K + + G E A + + +
Sbjct: 16 YKARQFDEAIEHYNKAWELHKDITYLN----NRAAAEYEKGEYETAISTLNDAVEQGREM 71
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121
+ V + + +++ +
Sbjct: 72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-------------------------- 105
Query: 122 LFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSEL-LLYQSMV 180
+ A L + + L+ V E Y +
Sbjct: 106 ---------LTEHRTADILTKLRNAEKE---LKKAEAEAYVNPEKAEEARLEGKEYFTK- 152
Query: 181 IQDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQE 237
D AVK + E I Y A KL + EA+ IE++
Sbjct: 153 ----SDWPNAVKA---YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205
Query: 238 NTLYYN 243
Y
Sbjct: 206 FVRAYI 211
Score = 43.7 bits (104), Expect = 9e-05
Identities = 28/202 (13%), Positives = 58/202 (28%), Gaps = 39/202 (19%)
Query: 386 PTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEET 445
++ + +G + A EA + ++A L Y+N++ A + + A T
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEY-ETAIST 60
Query: 446 CSK---FTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQY 502
+ RE + + + + ++ R+G HK
Sbjct: 61 LNDAVEQGREMRADYKVI------------SKSFARIGN---------------AYHKL- 92
Query: 503 KNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVY 562
K I K L L E+ + + + +
Sbjct: 93 ---GDLKKTIEYYQKSLTEHR----TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLE 145
Query: 563 GLLQRSDKKYDEAIKCYRNALK 584
G + + A+K Y +K
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIK 167
Score = 41.8 bits (99), Expect = 4e-04
Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 26/261 (9%)
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLY 241
+ +EA++H ++ E +H +T A + + G+Y A+ +E+ +E
Sbjct: 16 YKARQFDEAIEHYNKAWE-LHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD 74
Query: 242 YNKLVEAKQLTNNDDIFQLLTHY---ISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRH- 297
Y + +K + + L I Y K+ R + E+ K
Sbjct: 75 YKVI--SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA 132
Query: 298 GFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWV 357
+ Y + V++Y E + + P A
Sbjct: 133 YVNPEKAEEARLEGKEYFTKSD---WPNAVKAYTEMI------------KRAPEDA--RG 175
Query: 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417
Y A L +A+ N AI+ P + ++ K + A + LD A++
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 418 LD--TADRYINSKCAKYMLRA 436
D + + + +A
Sbjct: 236 KDAEVNNGSSAREIDQLYYKA 256
Score = 37.9 bits (89), Expect = 0.008
Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 4/112 (3%)
Query: 3 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
+ + N +K + + I P+ A + + L L EA + + D
Sbjct: 150 FTKSDWPNAVKAYTEMIKRAPEDAR---GYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 113
+ Q + K+Y A++ A + + + Q+ + +
Sbjct: 207 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258
Score = 37.1 bits (87), Expect = 0.012
Identities = 7/94 (7%), Positives = 25/94 (26%), Gaps = 5/94 (5%)
Query: 497 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555
Y+ +Q+ ++ + K + + G E A + + +
Sbjct: 16 YKARQFDEAIEHYNKAWELHKDITYLN----NRAAAEYEKGEYETAISTLNDAVEQGREM 71
Query: 556 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDN 589
+ V + + +++ +
Sbjct: 72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS 105
Score = 36.8 bits (86), Expect = 0.015
Identities = 11/127 (8%), Positives = 34/127 (26%), Gaps = 11/127 (8%)
Query: 497 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555
YE +Y+ + + + + + +G +++ + +
Sbjct: 49 YEKGEYETAISTLNDAVEQGREMRA---DYKVISKSFARIGNAYHKLGDLKKTIEYY-QK 104
Query: 556 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSA 615
+ H + + ++ +K + + R D A
Sbjct: 105 SLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN------A 158
Query: 616 MENLNEM 622
++ EM
Sbjct: 159 VKAYTEM 165
Score = 33.7 bits (78), Expect = 0.18
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 212 GALKLKLGQYNEAMKHYESLIERNQENTLYYNK 244
G K Q++EA++HY E +++ T N+
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHKDITYLNNR 44
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 54.7 bits (132), Expect = 4e-08
Identities = 39/251 (15%), Positives = 72/251 (28%), Gaps = 32/251 (12%)
Query: 15 AKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS 74
Q +H + +GL G A ++ D K W G Q
Sbjct: 52 GYQFEEENPLRDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 110
Query: 75 DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG----YRE-----TRYQLFML 125
+++ AI R L+ + DN + L++ R+ Y +
Sbjct: 111 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170
Query: 126 RPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSY--------DFEHSELLLYQ 177
+ A G + +L L + +V + ++
Sbjct: 171 PAEEGAGGAGLGPSKRIL-------GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223
Query: 178 SMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIER 234
++ SG+ ++AV F + + + GA Q EA+ Y +E
Sbjct: 224 GVLFNLSGEYDKAVDC---FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280
Query: 235 NQENTL-YYNK 244
YN
Sbjct: 281 QPGYIRSRYNL 291
Score = 53.5 bits (129), Expect = 1e-07
Identities = 36/278 (12%), Positives = 80/278 (28%), Gaps = 66/278 (23%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
F + +PK+ E G T ++ A +RR L + +
Sbjct: 87 FEAAVQQDPKHME---AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143
Query: 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRA-- 131
++ +A + R+ L++ ++ L + L
Sbjct: 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA-GLGPSKRILGSLLSDSLFLEVKE 202
Query: 132 ----------------SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLL 175
G + ++L ++D A ++ F V D+ L
Sbjct: 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA---VDCFTAALSV-RPNDYL-----L 253
Query: 176 YQSM--VIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLK---------------- 217
+ + + + EEAV R AL+L+
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRR----------------ALELQPGYIRSRYNLGISCIN 297
Query: 218 LGQYNEAMKHYESLIERNQENTL-YYNKLVEAKQLTNN 254
LG + EA++H+ + +++ ++ + +
Sbjct: 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST 335
Score = 45.0 bits (107), Expect = 5e-05
Identities = 34/234 (14%), Positives = 63/234 (26%), Gaps = 28/234 (11%)
Query: 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417
GD A+ AA+ P +E + G L A L
Sbjct: 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE 126
Query: 418 L--DTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALA 475
L D + + +L ++A E + + E
Sbjct: 127 LKPDNQTALMALAVSFTNE--SLQRQACEILRD-------WLRYTPAYAHLVTPAEEGAG 177
Query: 476 YQRLGRWGDTLKKCHEVDR-----KCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGL 530
LG L + + + +P + + G+
Sbjct: 178 GAGLGPSKRILGSLLSDSLFLEVKELFL-----------AAVRLDPTSIDPDVQCGL-GV 225
Query: 531 TLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
N G ++A + L ++ W+ G + + +EA+ YR AL+
Sbjct: 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279
Score = 44.6 bits (106), Expect = 7e-05
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 509 AKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS 568
Q +H + +GL G A ++ D K W G Q
Sbjct: 52 GYQFEEENPLRDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 110
Query: 569 DKKYDEAIKCYRNALK 584
+++ AI R L+
Sbjct: 111 NEQELLAISALRRCLE 126
Score = 41.2 bits (97), Expect = 0.001
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 3/110 (2%)
Query: 508 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567
F + +PK+ E G T ++ A +RR L + +
Sbjct: 87 FEAAVQQDPKHME---AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143
Query: 568 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAME 617
++ +A + R+ L++ ++ R S +
Sbjct: 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193
Score = 39.2 bits (92), Expect = 0.004
Identities = 30/243 (12%), Positives = 63/243 (25%), Gaps = 44/243 (18%)
Query: 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQ 416
+ YL + A++ + ++ P + + + +A + L +
Sbjct: 100 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159
Query: 417 SLDT--ADRYINSKCAKY-------------MLRANLIKEAEETCSKFTREGVSAMENLN 461
A ++ +L +L E +E A+
Sbjct: 160 RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA-------AVRLDP 212
Query: 462 EMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEH 521
Q + + G + + C+ + P
Sbjct: 213 TSIDPDVQCGLGVLFNLSGEYDKAVD--------CFT-----------AALSVRPNDYL- 252
Query: 522 GETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRN 581
G TL + EEA RR L + G+ + + EA++ +
Sbjct: 253 --LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 310
Query: 582 ALK 584
AL
Sbjct: 311 ALN 313
Score = 34.6 bits (80), Expect = 0.11
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 18/91 (19%)
Query: 515 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR------- 567
P L ++ + +A E +R LR
Sbjct: 128 KPDNQT---ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS 184
Query: 568 --------SDKKYDEAIKCYRNALKWEHDNI 590
SD + E + + A++ + +I
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSI 215
Score = 33.5 bits (77), Expect = 0.22
Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 13/115 (11%)
Query: 506 LKFAKQILTNPKYAEH--------GETLAMKGLTLNCLGRK-EEAYEYVRRGLR----ND 552
++F + + E L + +G + N
Sbjct: 1 MEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENP 60
Query: 553 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 607
L+ H GL + + A+ + A++ + +++ + L Q +
Sbjct: 61 LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115
Score = 32.7 bits (75), Expect = 0.41
Identities = 51/375 (13%), Positives = 89/375 (23%), Gaps = 72/375 (19%)
Query: 76 KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRAS-WI 134
+ +E K A W L + YQ P +
Sbjct: 22 AELEEMAKRDAEAHPW-------------LSDYDDLTSATYDKGYQFEEENPLRDHPQPF 68
Query: 135 GFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHL 194
+ D A + F Q D +H E Y ++ A+ L
Sbjct: 69 EEGLRRLQEGDLPNA---VLLFEAAVQ----QDPKHMEAWQYLGTTQAENEQELLAISAL 121
Query: 195 DRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNN 254
R E D T +A + + E
Sbjct: 122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181
Query: 255 DDIFQLLTHY---------ISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPP 305
++L + A RL + P
Sbjct: 182 GPSKRILGSLLSDSLFLEVKELFLAAV---RLDPTSID--------------------PD 218
Query: 306 LFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHY 365
+ L L++ + + V+ + AL V P LLW + L
Sbjct: 219 VQCGLGVLFNLSGE---YDKAVDCFTAAL------------SVRPNDYLLW--NKLGATL 261
Query: 366 DHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL--DTADR 423
+ + +A+ A++ P I G + G EA + EA ++ +
Sbjct: 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321
Query: 424 YINSKCAKYMLRANL 438
+ + L
Sbjct: 322 RGEGGAMSENIWSTL 336
Score = 30.8 bits (70), Expect = 1.4
Identities = 14/82 (17%), Positives = 19/82 (23%), Gaps = 18/82 (21%)
Query: 21 NPKYAEHGETLAM--KGLTLNCLGRKEEAYEYVRRGLR-----------NDLKSHVCWHV 67
P Y + G++ LG EA E+ L S W
Sbjct: 281 QPGYIR-----SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST 335
Query: 68 YGLLQRSDKKYDEAIKCYRNAL 89
L + D L
Sbjct: 336 LRLALSMLGQSDAYGAADARDL 357
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 54.3 bits (131), Expect = 7e-08
Identities = 30/223 (13%), Positives = 65/223 (29%), Gaps = 18/223 (8%)
Query: 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 93
+GL G ++ + D W G+ Q ++ AI + L+ +
Sbjct: 71 EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130
Query: 94 DNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNIL 153
+N++ + L++ + E P + + L +
Sbjct: 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS---P 187
Query: 154 EAFRKTQQVTNSY------DFEHSELLLYQSM--VIQDSGDLEEAVKHLDRFKEQIHDKL 205
+ V Y + + + L + + SG+ A+ F + +
Sbjct: 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA---FNAALTVRP 244
Query: 206 TVEETY---GALKLKLGQYNEAMKHYESLIERNQENTL-YYNK 244
+ GA + EA++ Y +E YN
Sbjct: 245 EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL 287
Score = 47.7 bits (114), Expect = 7e-06
Identities = 26/229 (11%), Positives = 61/229 (26%), Gaps = 23/229 (10%)
Query: 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417
GD + ++ AAI P E + G + A L
Sbjct: 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE 127
Query: 418 L--DTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALA 475
L + + + + ++A E ++ +
Sbjct: 128 LQPNNLKALMALAVSYTNT--SHQQDACEALKN-------WIK---------QNPKYKYL 169
Query: 476 YQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCL 535
+ ++ + + K + + N + + G+ +
Sbjct: 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKE--LYLEAAHQNGDMIDPDLQTGL-GVLFHLS 226
Query: 536 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
G A + L + + W+ G + + +EA++ Y AL+
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275
Score = 45.4 bits (108), Expect = 4e-05
Identities = 45/381 (11%), Positives = 102/381 (26%), Gaps = 61/381 (16%)
Query: 76 KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFM--------LRP 127
+++ A + ++ +++ + E +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62
Query: 128 TQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL 187
+ D + + D +E + + ++ +
Sbjct: 63 KDWPGAFEEGLKRLKEGDLPVT---ILFMEAAIL----QDPGDAEAWQFLGITQAENENE 115
Query: 188 EEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENT-LYYNK-- 244
+ A+ L R E + L +A + ++ I++N + L NK
Sbjct: 116 QAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG 175
Query: 245 -LVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGV 303
++++ + +L Y +A N D
Sbjct: 176 SPGLTRRMSKSPVDSSVLEGVKELYLEA-----AHQNGDMID------------------ 212
Query: 304 PPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQ 363
P L L L+ + + ++++ AL V P LW + L
Sbjct: 213 PDLQTGLGVLFHLSGE---FNRAIDAFNAAL------------TVRPEDYSLW--NRLGA 255
Query: 364 HYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL--DTA 421
+ + +A+ A++ P I G + G EA A SL +
Sbjct: 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315
Query: 422 DRYINSKCAKYMLRANLIKEA 442
++ A ++ A
Sbjct: 316 NQQQVPHPAISGNIWAALRIA 336
Score = 44.3 bits (105), Expect = 1e-04
Identities = 33/233 (14%), Positives = 60/233 (25%), Gaps = 27/233 (11%)
Query: 356 WVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA 415
+ +L + A+ + ++ P ++ + Y + +A + L
Sbjct: 100 EAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNW 159
Query: 416 QSL--DTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECA 473
N K + + R + ++ S E E
Sbjct: 160 IKQNPKYKYLVKNKKGSPGLTRR--MSKSPVDSSVLEG----VKELYLEAAHQNGDMIDP 213
Query: 474 LAYQRLGRWGDTLKKCHEVDR--KCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLT 531
LG E +R + + P+ G T
Sbjct: 214 DLQTGLG---VLFHLSGEFNRAIDAFN-----------AALTVRPEDYS---LWNRLGAT 256
Query: 532 LNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
L R EEA E R L + G+ + Y EA+ + AL
Sbjct: 257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309
Score = 43.1 bits (102), Expect = 2e-04
Identities = 11/62 (17%), Positives = 22/62 (35%)
Query: 528 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 587
+GL G ++ + D W G+ Q ++ AI + L+ +
Sbjct: 71 EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130
Query: 588 DN 589
+N
Sbjct: 131 NN 132
Score = 38.9 bits (91), Expect = 0.005
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
+ + N + + G+ + G A + L + + W+ G
Sbjct: 200 YLEAAHQNGDMIDPDLQTGL-GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258
Query: 74 SDKKYDEAIKCYRNALK 90
+ + +EA++ Y AL+
Sbjct: 259 NGDRSEEAVEAYTRALE 275
Score = 35.8 bits (83), Expect = 0.041
Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 5/105 (4%)
Query: 508 FAKQILTNPKYAEHGETLAMK-GLTLNCLGRKEEAYEYVRRGLR----NDLKSHVCWHVY 562
K E +A + ++ N + + +G N K
Sbjct: 12 VESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEE 71
Query: 563 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 607
GL + + I A+ + + + + L + Q + + +
Sbjct: 72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQ 116
Score = 31.6 bits (72), Expect = 0.83
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 13/86 (15%)
Query: 515 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWH----VYGLLQRSDK 570
P + L ++ +++A E ++ ++ + K GL +R K
Sbjct: 129 QPNNLK---ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK 185
Query: 571 ------KYDEAIKCYRNALKWEHDNI 590
+ + Y A D I
Sbjct: 186 SPVDSSVLEGVKELYLEAAHQNGDMI 211
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 50.6 bits (122), Expect = 4e-07
Identities = 26/241 (10%), Positives = 70/241 (29%), Gaps = 23/241 (9%)
Query: 13 KFAKQILTNPKYAE-HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLL 71
P+ + T + + G E+A E + + + + + + + L
Sbjct: 7 HHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANL 66
Query: 72 QRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG----YRETRYQLFMLRP 127
S + + A+ Y AL+ + + + + + +
Sbjct: 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA----LRAGM 122
Query: 128 TQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL 187
+ L +A L ++ ++ + + M + + G L
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLA---LPYLQRAVELNENDTEARFQF----GMCLANEGML 175
Query: 188 EEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTL-YYN 243
+EA+ F + + G +A++ + I+ ++ L +
Sbjct: 176 DEALSQ---FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232
Query: 244 K 244
K
Sbjct: 233 K 233
Score = 44.8 bits (107), Expect = 4e-05
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 3 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
+ YK F K + + + M G L L + + A Y++R + +
Sbjct: 102 VVKEMYKEAKDMFEKALRAGMENGD---LFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALK 90
+G+ ++ DEA+ + +
Sbjct: 159 TEARFQFGMCLANEGMLDEALSQFAAVTE 187
Score = 44.8 bits (107), Expect = 4e-05
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 497 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555
+ YK F K + + + M G L L + + A Y++R + +
Sbjct: 102 VVKEMYKEAKDMFEKALRAGMENGD---LFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158
Query: 556 HVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
+G+ ++ DEA+ + +
Sbjct: 159 TEARFQFGMCLANEGMLDEALSQFAAVTE 187
Score = 44.8 bits (107), Expect = 4e-05
Identities = 35/241 (14%), Positives = 67/241 (27%), Gaps = 41/241 (17%)
Query: 350 PASALLWVYHYLAQH--YDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLE 407
P + + Q GD KA AI+ ++ + ++
Sbjct: 16 PRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELER 75
Query: 408 AYKWLDEAQSL--DTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQC 465
A + D+A L A Y + + + KEA++ K A+
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVK--EMYKEAKDMFEK-------ALR------- 119
Query: 466 MWFQTECALAYQRLGRWGDTLKKCHEVDR--KCYEHKQYKNGLKFAKQILTNPKYAEHGE 523
E + LG L K + + + + N E
Sbjct: 120 --AGMENGDLFYMLG---TVLVKLEQPKLALPYLQ-----------RAVELNENDTE--- 160
Query: 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNAL 583
G+ L G +EA D ++ G+ + ++A++ A+
Sbjct: 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220
Query: 584 K 584
Sbjct: 221 D 221
Score = 41.0 bits (97), Expect = 7e-04
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 507 KFAKQILTNPKYAE-HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLL 565
P+ + T + + G E+A E + + + + + + + L
Sbjct: 7 HHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANL 66
Query: 566 QRSDKKYDEAIKCYRNALK 584
S + + A+ Y AL+
Sbjct: 67 LSSVNELERALAFYDKALE 85
Score = 40.2 bits (95), Expect = 0.001
Identities = 10/82 (12%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 508 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567
+ K + + A G +EA + + LR +++ +++ G +
Sbjct: 80 YDKALELDSSAAT---AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV 136
Query: 568 SDKKYDEAIKCYRNALKWEHDN 589
++ A+ + A++ ++
Sbjct: 137 KLEQPKLALPYLQRAVELNEND 158
Score = 36.7 bits (86), Expect = 0.016
Identities = 23/180 (12%), Positives = 58/180 (32%), Gaps = 20/180 (11%)
Query: 71 LQRSDKKYDEAIKCYRNA--LKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128
+ S + + + Q+ R + + E + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYE-KAAEAFT----KAIEENKE 55
Query: 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLE 188
+I FA +++ + A L + K ++ +S + V +
Sbjct: 56 DAIPYINFANLLSSVNELERA---LAFYDKALELDSSAATAYYGA----GNVYVVKEMYK 108
Query: 189 EAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTLYYNKL 245
EA F++ + + + + G + +KL Q A+ + + +E N+ +T +
Sbjct: 109 EAKDM---FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQF 165
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 51.1 bits (123), Expect = 5e-07
Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 31/231 (13%)
Query: 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 93
+GL++ L EA + + W GL Q ++K AI +A +
Sbjct: 27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86
Query: 94 DNIQIMRDLSLLQIQMRDLEG--------------YRETRYQLFM-LRPTQRASWIGFAM 138
+I + L++ + Y + +
Sbjct: 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146
Query: 139 AYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSEL-LLYQSMVIQDSGDLEEAVKHLDRF 197
+ +++ ++ + H+ L +LY S + + A +
Sbjct: 147 FFAAPNEYREC---RTLLHAALEMNPNDAQLHASLGVLY-----NLSNNYDSAAAN---L 195
Query: 198 KEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTL-YYNK 244
+ + + + + GA + EA+ Y ++ N YN
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM 246
Score = 50.8 bits (122), Expect = 7e-07
Identities = 37/266 (13%), Positives = 69/266 (25%), Gaps = 63/266 (23%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
F P+ E GLT + A + D K +
Sbjct: 44 FEAVCQAAPEREE---AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100
Query: 74 SDKKYDEAIKCYRNALK------------WEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121
++ + A+ R L + D ++ YRE R
Sbjct: 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR-T 159
Query: 122 LFM----LRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQ 177
L + P + Y+L +++D A R+ ++ D + L+
Sbjct: 160 LLHAALEMNPNDAQLHASLGVLYNLSNNYDSA---AANLRRAVEL-RPDDAQ-----LWN 210
Query: 178 SM--VIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLK----------------LG 219
+ + + +EA+ +R AL + +
Sbjct: 211 KLGATLANGNRPQEALDAYNR----------------ALDINPGYVRVMYNMAVSYSNMS 254
Query: 220 QYNEAMKHYESLIERNQENTLYYNKL 245
QY+ A K I T +
Sbjct: 255 QYDLAAKQLVRAIYMQVGGTTPTGEA 280
Score = 48.1 bits (115), Expect = 5e-06
Identities = 28/235 (11%), Positives = 54/235 (22%), Gaps = 32/235 (13%)
Query: 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417
L + +A A P E + + G A L+ A+
Sbjct: 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM 83
Query: 418 L--DTADRYINSKCAKYMLRANLIKEAEETCSKFTR------EGVSAMENLNEMQCMWFQ 469
L + + + A + + + S +
Sbjct: 84 LDPKDIAVHAALAVSHTNE--HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNV 141
Query: 470 TECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKG 529
+ + + + NP A+ A G
Sbjct: 142 QSEDFFFAAPNEYRECRT--------LLH-----------AALEMNPNDAQ---LHASLG 179
Query: 530 LTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
+ N + A +RR + W+ G + + EA+ Y AL
Sbjct: 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234
Score = 47.3 bits (113), Expect = 9e-06
Identities = 30/222 (13%), Positives = 55/222 (24%), Gaps = 28/222 (12%)
Query: 42 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 101
G + N H GL EA + + + + R
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 102 LSLLQIQMRDLEG----YRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFR 157
L L Q + R ML P A A+++ H+ + A L + R
Sbjct: 61 LGLTQAENEKDGLAIIALNHAR----MLDPKDIAVHAALAVSHTNEHNANAA---LASLR 113
Query: 158 KT-----------QQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLT 206
+ + + + E +
Sbjct: 114 AWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL---LHAALEMNPN 170
Query: 207 VEETY---GALKLKLGQYNEAMKHYESLIERNQENTLYYNKL 245
+ + G L Y+ A + +E ++ +NKL
Sbjct: 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212
Score = 40.0 bits (94), Expect = 0.002
Identities = 16/110 (14%), Positives = 28/110 (25%), Gaps = 3/110 (2%)
Query: 508 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567
F P+ E GLT + A + D K +
Sbjct: 44 FEAVCQAAPEREE---AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100
Query: 568 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAME 617
++ + A+ R L + Q+ + + DL E
Sbjct: 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150
Score = 36.9 bits (86), Expect = 0.017
Identities = 31/262 (11%), Positives = 72/262 (27%), Gaps = 70/262 (26%)
Query: 355 LWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIEL---------------FVTKGRIY 399
+ V+ LA + + + AL + A + P +L ++ +
Sbjct: 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148
Query: 400 KHAGDVLEAYKWLDEAQSL--DTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAM 457
+ E L A + + A + + + A + A+
Sbjct: 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN--NYDSAAANLRR-------AV 199
Query: 458 ENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDR--KCYEHKQYKNGLKFAKQILTN 515
E + + A + +LG TL + Y + + N
Sbjct: 200 E---------LRPDDAQLWNKLG---ATLANGNRPQEALDAYN-----------RALDIN 236
Query: 516 PKYAEHGETLAM--KGLTLNCLGRKEEAYEYVRRGL------------RNDLKSHVCWHV 561
P Y M ++ + + + + A + + R + + + W
Sbjct: 237 PGYVR-----VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDF 291
Query: 562 YGLLQRSDKKYDEAIKCYRNAL 583
+ +L + D Y +
Sbjct: 292 FRMLLNVMNRPDLVELTYAQNV 313
Score = 34.2 bits (79), Expect = 0.13
Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 19/83 (22%)
Query: 21 NPKYAEHGETLAM--KGLTLNCLGRKEEAYEYVRRGL------------RNDLKSHVCWH 66
NP Y M ++ + + + + A + + R + + + W
Sbjct: 236 NPGYVR-----VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD 290
Query: 67 VYGLLQRSDKKYDEAIKCYRNAL 89
+ +L + D Y +
Sbjct: 291 FFRMLLNVMNRPDLVELTYAQNV 313
Score = 33.8 bits (78), Expect = 0.17
Identities = 11/72 (15%), Positives = 17/72 (23%)
Query: 536 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 595
G + N H GL EA + + + + R
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 596 LSLLQIQMRDLE 607
L L Q +
Sbjct: 61 LGLTQAENEKDG 72
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 49.6 bits (119), Expect = 1e-06
Identities = 35/259 (13%), Positives = 78/259 (30%), Gaps = 27/259 (10%)
Query: 2 CYEHKQYKNGLKFAKQILTNPKYAE-HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK 60
+ K + + + + GL G E+A +R+ L D
Sbjct: 14 LVPRGSHMGDQNPLKTDKGRDEARDAYIQ----LGLGYLQRGNTEQAKVPLRKALEIDPS 69
Query: 61 SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL-SLLQIQMRDLEGYRETR 119
S ++ +++ + A + YR AL + N +++ + L Q R E Y+
Sbjct: 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129
Query: 120 YQL-FMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQS 178
L P + + + + A E F K+ ++ + E+ +
Sbjct: 130 EASQDTLYPERSRVFENLGLVSLQMKKPAQA---KEYFEKSLRLNRNQPSVALEM----A 182
Query: 179 MVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERN 235
++ + A ++ D F + L + A + L
Sbjct: 183 DLLYKEREYVPARQYYDLF---AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239
Query: 236 QENTLYYNKLVEAKQLTNN 254
+ +E ++
Sbjct: 240 PGS-------LEYQEFQAE 251
Score = 41.1 bits (97), Expect = 6e-04
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 496 CYEHKQYKNGLKFAKQILTNPKYAE-HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK 554
+ K + + + + GL G E+A +R+ L D
Sbjct: 14 LVPRGSHMGDQNPLKTDKGRDEARDAYIQ----LGLGYLQRGNTEQAKVPLRKALEIDPS 69
Query: 555 SHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIM 593
S ++ +++ + A + YR AL + N +++
Sbjct: 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL 108
Score = 40.3 bits (95), Expect = 0.001
Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 30/140 (21%)
Query: 473 ALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAM--KGL 530
A+ +Q + Y K + ++ + A + G
Sbjct: 78 AVVFQTEMEPKLADE--------EYR-----------KALASDSRNAR-----VLNNYGG 113
Query: 531 TLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVY---GLLQRSDKKYDEAIKCYRNALKWEH 587
L R EEAY+ + ++ L V+ GL+ KK +A + + +L+
Sbjct: 114 FLYEQKRYEEAYQRLLEASQDTLYPER-SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172
Query: 588 DNIQIMRDLSLLQIQMRDLE 607
+ + +++ L + R+
Sbjct: 173 NQPSVALEMADLLYKEREYV 192
Score = 37.2 bits (87), Expect = 0.012
Identities = 28/232 (12%), Positives = 64/232 (27%), Gaps = 37/232 (15%)
Query: 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQ 416
Y L Y G+T +A + A++ P+ + +++ + A + +A
Sbjct: 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL 98
Query: 417 SL--DTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECAL 474
+ A N Y +EA + + A ++ E +
Sbjct: 99 ASDSRNARVLNNYGGFLYEQ--KRYEEAYQRLLE-------ASQDT-------LYPERSR 142
Query: 475 AYQRLGRWGDTLKKCHEVD--RKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTL 532
++ LG + + ++ +E K + N L
Sbjct: 143 VFENLGL---VSLQMKKPAQAKEYFE-----------KSLRLNRNQPS---VALEMADLL 185
Query: 533 NCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
A +Y + ++ + L + + D A +
Sbjct: 186 YKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237
Score = 29.5 bits (67), Expect = 3.7
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKL--TVEETY---GALKLKLGQYNEAMKHYESLIERNQ 236
+ EEA + E D L + G + L++ + +A +++E + N+
Sbjct: 116 YEQKRYEEAYQR---LLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172
Query: 237 ENTLYYNKLVEAKQLTNNDD 256
++ +
Sbjct: 173 NQPSVALEMADLLYKEREYV 192
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 49.0 bits (117), Expect = 1e-06
Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 23/215 (10%)
Query: 25 AEHGETLAMKGLTLNCLGRKEEAYE----------------YVRRGLRNDLKSHVCWHVY 68
+ + + K G+ +A Y +N S
Sbjct: 1 GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60
Query: 69 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128
L + ++ YD+A Y+ L+ +N+ + + +Q+ + ++ L
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120
Query: 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLE 188
A+ I Y+L + + LE K + + + E
Sbjct: 121 NLAANIFLGNYYYLTAEQEKK--KLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYE 174
Query: 189 EAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNE 223
+A L + ++T + + N
Sbjct: 175 KARNSLQKVIL-RFPSTEAQKTLDKILRIEKEVNR 208
Score = 46.3 bits (110), Expect = 8e-06
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 15/168 (8%)
Query: 2 CYEHKQYKNGLKFAKQILT-NPKYAE-------------HGETLAMKGLTLNCLGRKEEA 47
E Q + + +Q + N E + L ++A
Sbjct: 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA 73
Query: 48 YEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL-SLLQ 106
Y + + L+ + C +Q + +A++ Y L+ E DN+ L +
Sbjct: 74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133
Query: 107 IQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILE 154
+ + ET Y+ + + ++ ++ A N L+
Sbjct: 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181
Score = 44.0 bits (104), Expect = 5e-05
Identities = 18/193 (9%), Positives = 55/193 (28%), Gaps = 32/193 (16%)
Query: 68 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRP 127
+ +A+ +R + D ++ ++ E + +L
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRT----EMYYWTNVDKNSEISSKLATEL----- 60
Query: 128 TQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL 187
A+AY ++D A +++ Q + + L + + G
Sbjct: 61 ---------ALAYKKNRNYDKA---YLFYKELLQ----KAPNNVDCLEACAEMQVCRGQE 104
Query: 188 EEAVKHLDRFKEQIHDKLTVEETY----GALKLKLGQYNEAMKHYESLIERNQENTLYYN 243
++A++ ++ + + L Q + ++ + +
Sbjct: 105 KDALRMYEKILQ-LEADNL--AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY 161
Query: 244 KLVEAKQLTNNDD 256
+ +K T +
Sbjct: 162 RDGLSKLFTTRYE 174
Score = 41.3 bits (97), Expect = 4e-04
Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 14/126 (11%)
Query: 496 CYEHKQYKNGLKFAKQILT-NPKYAE-------------HGETLAMKGLTLNCLGRKEEA 541
E Q + + +Q + N E + L ++A
Sbjct: 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA 73
Query: 542 YEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 601
Y + + L+ + C +Q + +A++ Y L+ E DN+ L
Sbjct: 74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133
Query: 602 QMRDLE 607
+ E
Sbjct: 134 LTAEQE 139
Score = 39.0 bits (91), Expect = 0.002
Identities = 26/160 (16%), Positives = 52/160 (32%), Gaps = 13/160 (8%)
Query: 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQ 416
+ LA Y + KA + + P ++ + G +A + ++
Sbjct: 56 LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115
Query: 417 SLDTADRYINSKCAK-YMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALA 475
L+ + N Y L A K+ ET K + + +MQ ++ L+
Sbjct: 116 QLEADNLAANIFLGNYYYLTAEQEKKKLETDYK-------KLSSPTKMQYARYR--DGLS 166
Query: 476 YQRLGRWGD---TLKKCHEVDRKCYEHKQYKNGLKFAKQI 512
R+ +L+K K L+ K++
Sbjct: 167 KLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEV 206
Score = 37.4 bits (87), Expect = 0.008
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 3 YEHKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKE-EAYEYVRRGLRNDLK 60
Q K+ L+ ++IL G +E + E + L + K
Sbjct: 99 VCRGQEKDALRMYEKILQLEADNLA---ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155
Query: 61 SHVCWHVYGLLQRSDKKYDEAIKCYRNALK 90
+ GL + +Y++A + +
Sbjct: 156 MQYARYRDGLSKLFTTRYEKARNSLQKVIL 185
Score = 37.4 bits (87), Expect = 0.008
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 497 YEHKQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKE-EAYEYVRRGLRNDLK 554
Q K+ L+ ++IL G +E + E + L + K
Sbjct: 99 VCRGQEKDALRMYEKILQLEADNLA---ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155
Query: 555 SHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
+ GL + +Y++A + +
Sbjct: 156 MQYARYRDGLSKLFTTRYEKARNSLQKVIL 185
Score = 37.0 bits (86), Expect = 0.010
Identities = 26/213 (12%), Positives = 55/213 (25%), Gaps = 39/213 (18%)
Query: 211 YGALKLKLGQYNEAMKHYESLIERNQENT-LYYNKLVEAKQLTNNDDIFQLLTHYIS--K 267
+ ++ GQ +A+ ++ I N + T +YY V+ ++ +L Y
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69
Query: 268 YPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLV 327
Y KA + L+ + + +D +
Sbjct: 70 YDKA----------------YLFYKELLQ--KAPNNVDCLEACAEMQVCRGQ---EKDAL 108
Query: 328 ESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQ-HYDHLGDTMKALNYINAAIDHTP 386
Y + L ++E + +L +Y K L +
Sbjct: 109 RMYEKIL------------QLEADNL--AANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 387 TLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLD 419
+ G +A L +
Sbjct: 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187
Score = 36.3 bits (84), Expect = 0.021
Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 519 AEHGETLAMKGLTLNCLGRKEEAYE----------------YVRRGLRNDLKSHVCWHVY 562
+ + + K G+ +A Y +N S
Sbjct: 1 GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60
Query: 563 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 607
L + ++ YD+A Y+ L+ +N+ + + +Q+ +
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105
Score = 35.1 bits (81), Expect = 0.039
Identities = 11/104 (10%), Positives = 30/104 (28%), Gaps = 16/104 (15%)
Query: 169 EHSELLLYQSMVIQDSGDLEEAVKHLDR----------------FKEQIHDKLTVEETYG 212
+ + +L + ++G +AV + + + +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 213 ALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDD 256
K Y++A Y+ L+++ N E + +
Sbjct: 62 LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 46.3 bits (110), Expect = 2e-06
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 6/101 (5%)
Query: 521 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYR 580
+ E +GL++ L EA + + + W GL Q ++K AI
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 581 NALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNE 621
+A + +I + L++ + +A+ +L
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNAN------AALASLRA 110
Score = 45.9 bits (109), Expect = 3e-06
Identities = 16/87 (18%), Positives = 32/87 (36%)
Query: 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYR 86
+ E +GL++ L EA + + + W GL Q ++K AI
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 87 NALKWEHDNIQIMRDLSLLQIQMRDLE 113
+A + +I + L++ +
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNAN 102
Score = 34.0 bits (78), Expect = 0.043
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 3/77 (3%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
F P+ E GLT + A + D K +
Sbjct: 40 FEAVCQKEPEREE---AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96
Query: 74 SDKKYDEAIKCYRNALK 90
++ + A+ R L
Sbjct: 97 NEHNANAALASLRAWLL 113
Score = 34.0 bits (78), Expect = 0.043
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 3/77 (3%)
Query: 508 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567
F P+ E GLT + A + D K +
Sbjct: 40 FEAVCQKEPEREE---AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96
Query: 568 SDKKYDEAIKCYRNALK 584
++ + A+ R L
Sbjct: 97 NEHNANAALASLRAWLL 113
Score = 30.5 bits (69), Expect = 0.77
Identities = 11/60 (18%), Positives = 17/60 (28%)
Query: 360 YLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLD 419
L + +A A P E + + G A L+ A+ LD
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Score = 30.1 bits (68), Expect = 0.79
Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 11/109 (10%)
Query: 168 FEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEA 224
+ + E + + + + +L EA F+ + EE + G + + + A
Sbjct: 14 YMYHENPMEEGLSMLKLANLAEAALA---FEAVCQKEPEREEAWRSLGLTQAENEKDGLA 70
Query: 225 MKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHY---ISKYPK 270
+ + ++ + L A TN + L + P+
Sbjct: 71 IIALNHARMLDPKDIAVHAAL--AVSHTNEHNANAALASLRAWLLSQPQ 117
Score = 28.6 bits (64), Expect = 2.9
Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 7/104 (6%)
Query: 132 SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAV 191
+ + ++ L + A AF Q + E E + ++ A+
Sbjct: 19 NPMEEGLSMLKLANLAEA---ALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAI 71
Query: 192 KHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERN 235
L+ + + V N A+ + +
Sbjct: 72 IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 46.7 bits (111), Expect = 3e-06
Identities = 11/88 (12%), Positives = 29/88 (32%)
Query: 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCY 85
+ + + GR EEA + R D + + + +++ +A Y
Sbjct: 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY 93
Query: 86 RNALKWEHDNIQIMRDLSLLQIQMRDLE 113
A ++ + Q++++
Sbjct: 94 AVAFALGKNDYTPVFHTGQCQLRLKAPL 121
Score = 46.7 bits (111), Expect = 3e-06
Identities = 11/88 (12%), Positives = 29/88 (32%)
Query: 520 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCY 579
+ + + GR EEA + R D + + + +++ +A Y
Sbjct: 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY 93
Query: 580 RNALKWEHDNIQIMRDLSLLQIQMRDLE 607
A ++ + Q++++
Sbjct: 94 AVAFALGKNDYTPVFHTGQCQLRLKAPL 121
Score = 40.5 bits (95), Expect = 3e-04
Identities = 11/106 (10%), Positives = 31/106 (29%), Gaps = 4/106 (3%)
Query: 3 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
Y + + F + + ++ + + ++A +
Sbjct: 47 YNKGRIEEAEVFFRFLCIYDFYNVDY---IMGLAAIYQIKEQFQQAADLYAVAFALGKND 103
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 107
+ G Q K +A +C+ ++ +D ++ S L
Sbjct: 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDA 149
Score = 40.5 bits (95), Expect = 3e-04
Identities = 11/106 (10%), Positives = 31/106 (29%), Gaps = 4/106 (3%)
Query: 497 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555
Y + + F + + ++ + + ++A +
Sbjct: 47 YNKGRIEEAEVFFRFLCIYDFYNVDY---IMGLAAIYQIKEQFQQAADLYAVAFALGKND 103
Query: 556 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQI 601
+ G Q K +A +C+ ++ +D ++ S L
Sbjct: 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDA 149
Score = 36.3 bits (84), Expect = 0.010
Identities = 19/141 (13%), Positives = 44/141 (31%), Gaps = 19/141 (13%)
Query: 108 QMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYD 167
+ D T + + +A ++ + A FR YD
Sbjct: 14 AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEA---EVFFRFLCI----YD 66
Query: 168 FEHSELLLYQSMVIQDSGDLEEAVKH------LDRFKEQIHDKLTVEETYGALKLKLGQY 221
F + + ++ + + Q ++A L + G +L+L
Sbjct: 67 FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT------GQCQLRLKAP 120
Query: 222 NEAMKHYESLIERNQENTLYY 242
+A + +E +I+ + + L
Sbjct: 121 LKAKECFELVIQHSNDEKLKI 141
Score = 35.5 bits (82), Expect = 0.018
Identities = 15/151 (9%), Positives = 39/151 (25%), Gaps = 15/151 (9%)
Query: 76 KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIG 135
+ ++ D + + + +E L + +G
Sbjct: 16 IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMG 75
Query: 136 FAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLD 195
A Y + F A + + + + +A + +
Sbjct: 76 LAAIYQIKEQFQQA---ADLYAVAFA----LGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128
Query: 196 RFKEQIHDKLTVEETYGALKLKLGQYNEAMK 226
+ +D+ LK+K Y +A++
Sbjct: 129 LVIQHSNDE--------KLKIKAQSYLDAIQ 151
Score = 33.6 bits (77), Expect = 0.087
Identities = 11/107 (10%), Positives = 30/107 (28%), Gaps = 2/107 (1%)
Query: 152 ILEAFR--KTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEE 209
+++A T + N+ + + + + + G +EEA +
Sbjct: 15 VIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIM 74
Query: 210 TYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDD 256
A+ Q+ +A Y + + + +
Sbjct: 75 GLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPL 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 45.6 bits (108), Expect = 1e-05
Identities = 24/154 (15%), Positives = 60/154 (38%), Gaps = 9/154 (5%)
Query: 45 EEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104
E + ++ +R + ++ W + G Y ++ YR AL+ +N ++ L+
Sbjct: 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALAT 86
Query: 105 LQIQMRDLEGYRETRY---QLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQ 161
+ +TR + L + + + A + ++ A +E ++K
Sbjct: 87 VLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA---IELWQKVMD 143
Query: 162 VTNSYDFEHSELL--LYQSMVIQDSGDLEEAVKH 193
+ + ++L+ + + ++Q DLE H
Sbjct: 144 LNSP-RINRTQLVESINMAKLLQRRSDLEHHHHH 176
Score = 37.9 bits (88), Expect = 0.004
Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 13/146 (8%)
Query: 125 LRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYD---FEHSELLLYQSMVI 181
P W Y +D+ + L A+R+ Q+ + +L YQ+
Sbjct: 39 ANPQNSEQWALLGEYYLWQNDYSNS---LLAYRQALQLRGENAELYAALATVLYYQA--- 92
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLY 241
+ +D+ +++T + Y +A++ ++ +++ N
Sbjct: 93 -SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151
Query: 242 Y---NKLVEAKQLTNNDDIFQLLTHY 264
+ AK L D+ H+
Sbjct: 152 TQLVESINMAKLLQRRSDLEHHHHHH 177
Score = 37.5 bits (87), Expect = 0.006
Identities = 11/79 (13%), Positives = 31/79 (39%)
Query: 539 EEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 598
E + ++ +R + ++ W + G Y ++ YR AL+ +N ++ L+
Sbjct: 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALAT 86
Query: 599 LQIQMRDLEGYREGVSAME 617
+ + + ++
Sbjct: 87 VLYYQASQHMTAQTRAMID 105
Score = 32.1 bits (73), Expect = 0.38
Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 13 KFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYG--L 70
+I NP+ +E A+ G + R+ L+ ++ + L
Sbjct: 32 ALQDKIRANPQNSE---QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 71 LQRSDKK-YDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 113
++ + + AL + + I + L+ +
Sbjct: 89 YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Score = 32.1 bits (73), Expect = 0.38
Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 507 KFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYG--L 564
+I NP+ +E A+ G + R+ L+ ++ + L
Sbjct: 32 ALQDKIRANPQNSE---QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 565 LQRSDKK-YDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 607
++ + + AL + + I + L+ +
Sbjct: 89 YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Score = 31.0 bits (70), Expect = 0.89
Identities = 12/104 (11%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 508 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567
+ + + + AE LA + + + L D +
Sbjct: 67 YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126
Query: 568 SDKKYDEAIKCYRNALKWEHDNI---QIMRDLSLLQIQMRDLEG 608
Y +AI+ ++ + I Q++ +++ ++ R +
Sbjct: 127 MQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDL 170
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 47.4 bits (112), Expect = 1e-05
Identities = 21/161 (13%), Positives = 52/161 (32%), Gaps = 11/161 (6%)
Query: 500 KQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVC 558
K + + I+ PK + + + + L + E++ L D K++
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQ---VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202
Query: 559 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMEN 618
W + + K +D ++ LK + N + + ++
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262
Query: 619 LNEM-------QCMWFQTECALAYQRLGRWGDTLKKCHEVD 652
EM + W + L + L ++ + L + ++
Sbjct: 263 TLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQ 303
Score = 42.4 bits (99), Expect = 4e-04
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 6 KQYKNGLKFAKQILT-NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVC 64
K + + I+ PK + + + + L + E++ L D K++
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQ---VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202
Query: 65 WHVYGLLQRSDKKYDEAIKCYRNALKWEHDN 95
W + + K +D ++ LK + N
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233
Score = 37.4 bits (86), Expect = 0.014
Identities = 29/183 (15%), Positives = 60/183 (32%), Gaps = 9/183 (4%)
Query: 17 QILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYG-LLQRSD 75
QI+ + K+ + L R E A++ R + + ++ WH LL+
Sbjct: 89 QIIYSDKFRD---VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ 145
Query: 76 KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIG 135
K E + ++ + N Q+ +L +RD E + +W
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205
Query: 136 FAMAYHLLHDFDMACNILEAFRKT--QQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKH 193
+D L+ + + V N+ + ++ + D LE V++
Sbjct: 206 RQWVIQEFKLWDNE---LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262
Query: 194 LDR 196
Sbjct: 263 TLE 265
Score = 35.0 bits (80), Expect = 0.071
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 511 QILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYG-LLQRSD 569
QI+ + K+ + L R E A++ R + + ++ WH LL+
Sbjct: 89 QIIYSDKFRD---VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ 145
Query: 570 KKYDEAIKCYRNALKWEHDNIQI 592
K E + ++ + N Q+
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQV 168
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 46.7 bits (110), Expect = 1e-05
Identities = 30/253 (11%), Positives = 63/253 (24%), Gaps = 33/253 (13%)
Query: 360 YLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDE--AQS 417
+L + Y L+ I + + +F LD ++S
Sbjct: 39 FLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMF---AEYLASHSRRDAIVAELDREMSRS 95
Query: 418 LDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQ 477
+D + A A + L++ +
Sbjct: 96 VDVTNTTFLLMAASIYFYDQNPDAA--------------LRTLHQGDSLECMAMTVQILL 141
Query: 478 RLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAE--------------HGE 523
+L R K+ ++ + + + + K +
Sbjct: 142 KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL 201
Query: 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNAL 583
L + GR E A ++ L D +L + K E Y + L
Sbjct: 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261
Query: 584 KWEHDNIQIMRDL 596
K H + +++
Sbjct: 262 KDAHRSHPFIKEY 274
Score = 46.7 bits (110), Expect = 2e-05
Identities = 24/250 (9%), Positives = 67/250 (26%), Gaps = 12/250 (4%)
Query: 7 QYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWH 66
Y+ + A+++ + E + + ++ +L++
Sbjct: 14 SYQQCINEAQRVKPSSP-ERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQA---VR 69
Query: 67 VYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLR 126
++ S + D + + D L I + + + +
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY--DQNPDAALRTLH-Q 126
Query: 127 PTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGD 186
L D+A L+ + + D ++L +
Sbjct: 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE-----DATLTQLATAWVSLAAGGEK 181
Query: 187 LEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLV 246
L++A ++ L + A + G++ A + ++++ + LV
Sbjct: 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241
Query: 247 EAKQLTNNDD 256
Q
Sbjct: 242 VLSQHLGKPP 251
Score = 42.0 bits (98), Expect = 4e-04
Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 2/131 (1%)
Query: 23 KYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYG--LLQRSDKKYDE 80
+ E +AM L L R + A + +++ D + + L +K +
Sbjct: 125 HQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184
Query: 81 AIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAY 140
A ++ + ++ + + E + + I +
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244
Query: 141 HLLHDFDMACN 151
L N
Sbjct: 245 QHLGKPPEVTN 255
Score = 40.9 bits (95), Expect = 9e-04
Identities = 35/286 (12%), Positives = 74/286 (25%), Gaps = 45/286 (15%)
Query: 367 HLGDTMKALNYINAAIDHTPTL-IELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYI 425
++G + +N +P +E V R Y LDE + +
Sbjct: 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVV---LDEIKPSSAPELQA 67
Query: 426 NSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDT 485
A+Y+ + + V F A Y
Sbjct: 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTN-------TTFLLMAASIYFYDQNPDAA 120
Query: 486 LKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYV 545
L+ H+ + E +AM L L R + A + +
Sbjct: 121 LRTLHQ---------------------------GDSLECMAMTVQILLKLDRLDLARKEL 153
Query: 546 RRGLRNDLKSHVCWHVYG--LLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQM 603
++ D + + L +K +A ++ + ++ + +
Sbjct: 154 KKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213
Query: 604 RDLEGYREGVSAMENLNEMQCMWFQTECALA--YQRLGRWGDTLKK 647
E ++ + +T L Q LG+ + +
Sbjct: 214 GRWE---AAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256
Score = 37.0 bits (85), Expect = 0.017
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 3/106 (2%)
Query: 26 EHGETLAMKGLTLNCLGRK--EEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIK 83
+ T G + ++AY + + + + + +++ A
Sbjct: 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221
Query: 84 CYRNALKWEHDNIQIMRDL-SLLQIQMRDLEGYRETRYQLFMLRPT 128
+ AL + + + + +L L Q + E QL +
Sbjct: 222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267
Score = 35.9 bits (82), Expect = 0.034
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 6 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCW 65
++ ++ +++ K + L + GR E A ++ L D
Sbjct: 180 EKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237
Query: 66 HVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102
+L + K E Y + LK H + +++
Sbjct: 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274
Score = 35.1 bits (80), Expect = 0.068
Identities = 26/222 (11%), Positives = 56/222 (25%), Gaps = 17/222 (7%)
Query: 218 LGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRL 277
+G Y + + + + + E + + + L L S P+ +
Sbjct: 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMF 71
Query: 278 SLNYVSGDQFRT---EIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVES----- 329
+ S + E+D+ + + S+Y + +
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 330 ----YVEALSKTGHF-----SLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINA 380
V+ L K L+ + + + L + A
Sbjct: 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191
Query: 381 AIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTAD 422
D + L + + G A L EA D+
Sbjct: 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 45.7 bits (109), Expect = 1e-05
Identities = 12/89 (13%), Positives = 28/89 (31%)
Query: 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
C + + + + L +P Y KG+ G+ A Y++R L +
Sbjct: 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALK 90
+ + + +A ++
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQS 175
Score = 45.7 bits (109), Expect = 1e-05
Identities = 12/89 (13%), Positives = 28/89 (31%)
Query: 496 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555
C + + + + L +P Y KG+ G+ A Y++R L +
Sbjct: 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146
Query: 556 HVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
+ + + +A ++
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQS 175
Score = 44.9 bits (107), Expect = 3e-05
Identities = 27/200 (13%), Positives = 65/200 (32%), Gaps = 16/200 (8%)
Query: 35 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHD 94
+ +A + L++D K+ + W V + + K D+A + +R AL + D
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 95 NIQIMRDL-SLLQIQMRDLE----GYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMA 149
+ +I + L ++ + + PT + + + F +A
Sbjct: 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALAD--PTYPTPYIANLNKGICSAKQGQFGLA 132
Query: 150 CNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEE 209
+++ + EL + +G L +A + +++ ++ +
Sbjct: 133 ---EAYLKRSLAAQPQFPPAFKEL----ARTKMLAGQLGDADYYFKKYQSRVEVL--QAD 183
Query: 210 TYGALKLKLGQYNEAMKHYE 229
A YE
Sbjct: 184 DLLLGWKIAKALGNAQAAYE 203
Score = 38.4 bits (90), Expect = 0.004
Identities = 19/141 (13%), Positives = 38/141 (26%), Gaps = 31/141 (21%)
Query: 473 ALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAM--KGL 530
A YQ L + + + + P AE G
Sbjct: 49 AEIYQYLKVNDKAQE--------SFR-----------QALSIKPDSAE-----INNNYGW 84
Query: 531 TL-NCLGRKEEAYEYVRRGLRNDLKSHVCWHVY---GLLQRSDKKYDEAIKCYRNALKWE 586
L L R E+ Y + L + + G+ ++ A + +L +
Sbjct: 85 FLCGRLNRPAESMAYFDKALADPTYPTP-YIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143
Query: 587 HDNIQIMRDLSLLQIQMRDLE 607
++L+ ++ L
Sbjct: 144 PQFPPAFKELARTKMLAGQLG 164
Score = 37.6 bits (88), Expect = 0.007
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 529 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
+ +A + L++D K+ + W V + + K D+A + +R AL
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Score = 36.5 bits (85), Expect = 0.016
Identities = 31/241 (12%), Positives = 64/241 (26%), Gaps = 56/241 (23%)
Query: 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQ 416
+ LA Y D +A I A+ P ++ + IY++ +A + +A
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL 69
Query: 417 SL--DTADRYIN------SKCAKYMLRANLIKEAEETCSK-----FTREGVSAMENLNEM 463
S+ D+A+ N + + E+ K A N
Sbjct: 70 SIKPDSAEINNNYGWFLCGRLNRP-------AESMAYFDKALADPTYPTPYIANLNK--- 119
Query: 464 QCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGE 523
+ + G++G + + + P++
Sbjct: 120 ---------GICSAKQGQFGLAE--------AYLK-----------RSLAAQPQFP---P 148
Query: 524 TLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNAL 583
T G+ +A Y ++ + L + K A Y
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQS--RVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206
Query: 584 K 584
+
Sbjct: 207 Q 207
Score = 29.9 bits (68), Expect = 2.1
Identities = 9/77 (11%), Positives = 20/77 (25%), Gaps = 5/77 (6%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
+ + P++ T G+ +A Y ++ + L +
Sbjct: 136 LKRSLAAQPQFPP---AFKELARTKMLAGQLGDADYYFKKYQS--RVEVLQADDLLLGWK 190
Query: 74 SDKKYDEAIKCYRNALK 90
K A Y +
Sbjct: 191 IAKALGNAQAAYEYEAQ 207
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 44.3 bits (105), Expect = 2e-05
Identities = 14/88 (15%), Positives = 34/88 (38%)
Query: 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCY 85
+ E L G G+ ++A + + D + G ++S Y++A++ Y
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY 75
Query: 86 RNALKWEHDNIQIMRDLSLLQIQMRDLE 113
+ + + + +Q+ DL+
Sbjct: 76 SYGALMDINEPRFPFHAAECHLQLGDLD 103
Score = 44.3 bits (105), Expect = 2e-05
Identities = 14/88 (15%), Positives = 34/88 (38%)
Query: 520 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCY 579
+ E L G G+ ++A + + D + G ++S Y++A++ Y
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY 75
Query: 580 RNALKWEHDNIQIMRDLSLLQIQMRDLE 607
+ + + + +Q+ DL+
Sbjct: 76 SYGALMDINEPRFPFHAAECHLQLGDLD 103
Score = 42.8 bits (101), Expect = 6e-05
Identities = 14/116 (12%), Positives = 31/116 (26%), Gaps = 4/116 (3%)
Query: 3 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
Y+ ++ + K F + + A + G LG E+A + G D+
Sbjct: 29 YQAGKWDDAQKIFQALCMLDHYDARY---FLGLGACRQSLGLYEQALQSYSYGALMDINE 85
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRE 117
D A + +A + + + ++
Sbjct: 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKD 141
Score = 42.8 bits (101), Expect = 6e-05
Identities = 14/116 (12%), Positives = 31/116 (26%), Gaps = 4/116 (3%)
Query: 497 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555
Y+ ++ + K F + + A + G LG E+A + G D+
Sbjct: 29 YQAGKWDDAQKIFQALCMLDHYDARY---FLGLGACRQSLGLYEQALQSYSYGALMDINE 85
Query: 556 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRE 611
D A + +A + + + ++
Sbjct: 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARKD 141
Score = 39.7 bits (93), Expect = 7e-04
Identities = 21/145 (14%), Positives = 43/145 (29%), Gaps = 11/145 (7%)
Query: 85 YRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLH 144
D ++ + L Q Q + ++ L ML ++G L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 145 DFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDK 204
++ A L+++ D + + GDL+ A + +
Sbjct: 67 LYEQA---LQSYSYGAL----MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
Query: 205 LTVEETYGALKLKLGQYNEAMKHYE 229
+ AL + G EA+ +
Sbjct: 120 ----PAHEALAARAGAMLEAVTARK 140
Score = 32.4 bits (74), Expect = 0.19
Identities = 17/131 (12%), Positives = 32/131 (24%), Gaps = 7/131 (5%)
Query: 121 QLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMV 180
L L + +D A + F+ D + L
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDA---QKIFQAL----CMLDHYDARYFLGLGAC 61
Query: 181 IQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTL 240
Q G E+A++ ++ L+LG + A + S
Sbjct: 62 RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121
Query: 241 YYNKLVEAKQL 251
+ A +
Sbjct: 122 HEALAARAGAM 132
Score = 29.7 bits (67), Expect = 1.7
Identities = 8/44 (18%), Positives = 21/44 (47%)
Query: 211 YGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNN 254
G + + G++++A K +++L + + Y+ L +Q
Sbjct: 24 LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67
Score = 29.3 bits (66), Expect = 2.4
Identities = 15/88 (17%), Positives = 26/88 (29%)
Query: 169 EHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHY 228
+ E L +G ++A K H GA + LG Y +A++ Y
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY 75
Query: 229 ESLIERNQENTLYYNKLVEAKQLTNNDD 256
+ + E + D
Sbjct: 76 SYGALMDINEPRFPFHAAECHLQLGDLD 103
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 45.0 bits (107), Expect = 7e-05
Identities = 48/418 (11%), Positives = 111/418 (26%), Gaps = 90/418 (21%)
Query: 30 TLAMKGLTLNCLGRKEEAYEY------VRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIK 83
+ + + ++ LG G + + G + +
Sbjct: 10 SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69
Query: 84 CYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLL 143
++ A +Q DL QL AY L
Sbjct: 70 FFQAA----------------IQAGTEDLRTLSAIYSQL--------------GNAYFYL 99
Query: 144 HDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM--VIQDSGDLEEAVKHLDR---FK 198
D++ A ++ + + S + E ++ ++ G +EA +R
Sbjct: 100 GDYNKA---MQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156
Query: 199 EQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENT---LYYNK-LVEAKQL 251
Q+ D+L+ G + G++ + + + T +Y + L + L
Sbjct: 157 RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL 216
Query: 252 TNNDDIFQLLT------HYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPP 305
+ + + + + A + + + + G
Sbjct: 217 GDRGAQGRACGNLGNTYYLLGDFQAA-------IEH-----HQERLRIAREFGDRAAERR 264
Query: 306 LFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHF--SLQDEGEVEPASALLWVYHYLAQ 363
NL + + + + +A H+ +L E+ + L
Sbjct: 265 ANSNLGNSHIFLGQ----------FEDAAE---HYKRTLALAVELGEREVEAQSCYSLGN 311
Query: 364 HYDHLGDTMKALNY------INAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA 415
Y L + A+ Y I + + G + G A K+ ++
Sbjct: 312 TYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369
Score = 38.4 bits (90), Expect = 0.008
Identities = 43/280 (15%), Positives = 85/280 (30%), Gaps = 58/280 (20%)
Query: 341 SLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNY------INAAIDHTPTLIELFVT 394
++Q E + +Y L Y +LGD KA+ Y + +++ +
Sbjct: 74 AIQAGTEDLRTLSA--IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131
Query: 395 KGRIYKHAGDVLEAYKWLDEAQSL--------DTADRYIN-----SKCAKYMLRANLIKE 441
G K G EA + +L N K++ + N K
Sbjct: 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKF 191
Query: 442 AEETCSKFTREGVSAMENLNEMQCMWFQTEC-----------ALAYQRLGRWGDTLKKCH 490
++ TR A+E E + Y LG + ++
Sbjct: 192 GDDVKEALTR----AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH-- 245
Query: 491 EVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR 550
++ L+ A++ + G + LG+ E+A E+ +R L
Sbjct: 246 -----------HQERLRIAREFGDRA---AERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291
Query: 551 -----NDLKSH-VCWHVYGLLQRSDKKYDEAIKCYRNALK 584
+ + + G +++ AI+ + L
Sbjct: 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
Score = 35.0 bits (81), Expect = 0.082
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 9/89 (10%)
Query: 8 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL--RNDLKSHV-- 63
YK L A ++ ++ G T L A EY R L +L +
Sbjct: 286 YKRTLALAVELGERE---VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342
Query: 64 --CWHVYGLLQRSDKKYDEAIKCYRNALK 90
G + ++ A+K L+
Sbjct: 343 ARACWSLGNAHSAIGGHERALKYAEQHLQ 371
Score = 34.2 bits (79), Expect = 0.13
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 8 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR-----NDLKSH 62
++ L+ A++ + G + LG+ E+A E+ +R L + +
Sbjct: 246 HQERLRIAREFGDRA---AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302
Query: 63 -VCWHVYGLLQRSDKKYDEAIKCYRNALK 90
+ G +++ AI+ + L
Sbjct: 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
Score = 30.7 bits (70), Expect = 1.7
Identities = 5/67 (7%), Positives = 18/67 (26%), Gaps = 6/67 (8%)
Query: 524 TLAMKGLTLNCLGRKEEAYEY------VRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIK 577
+ + + ++ LG G + + G + +
Sbjct: 10 SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69
Query: 578 CYRNALK 584
++ A++
Sbjct: 70 FFQAAIQ 76
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 41.6 bits (98), Expect = 8e-05
Identities = 11/80 (13%), Positives = 27/80 (33%)
Query: 21 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 80
+ + E G T LG +A + G++ Y ++ + +Y++
Sbjct: 20 GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79
Query: 81 AIKCYRNALKWEHDNIQIMR 100
++ + D+ I
Sbjct: 80 GVELLLKIIAETSDDETIQS 99
Score = 41.6 bits (98), Expect = 8e-05
Identities = 11/80 (13%), Positives = 27/80 (33%)
Query: 515 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 574
+ + E G T LG +A + G++ Y ++ + +Y++
Sbjct: 20 GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79
Query: 575 AIKCYRNALKWEHDNIQIMR 594
++ + D+ I
Sbjct: 80 GVELLLKIIAETSDDETIQS 99
Score = 37.4 bits (87), Expect = 0.003
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 535 LGRKEEAYEYVRRGLRNDLKS---HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 591
LG + +A Y + + + L+ C+ G R+ +Y +A N +K ++
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 592 IMRDLSLLQIQMRDLEGYREGVSAMENL 619
+ +++ + +L Y +GV + +
Sbjct: 63 LRVFYAMV---LYNLGRYEQGVELLLKI 87
Score = 37.4 bits (87), Expect = 0.003
Identities = 19/154 (12%), Positives = 41/154 (26%), Gaps = 51/154 (33%)
Query: 77 KYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGF 136
+A+ Y A+ + ++G
Sbjct: 5 LEAQAVPYYEKAI-------------------------------ASGLQGKDLAECYLGL 33
Query: 137 AMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDR 196
+ L ++ A + H L ++ +MV+ + G E+ V+ L +
Sbjct: 34 GSTFRTLGEYRKA---EAVLANGVKQ----FPNHQALRVFYAMVLYNLGRYEQGVELLLK 86
Query: 197 F-KEQIHDKLTVEETYGALKLKLGQYNEAMKHYE 229
E D+ + Y +A+ Y
Sbjct: 87 IIAETSDDE------------TIQSYKQAILFYA 108
Score = 36.6 bits (85), Expect = 0.004
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 41 LGRKEEAYEYVRRGLRNDLKS---HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQ 97
LG + +A Y + + + L+ C+ G R+ +Y +A N +K ++
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 98 IMRDLSL 104
+ ++
Sbjct: 63 LRVFYAM 69
Score = 34.7 bits (80), Expect = 0.019
Identities = 14/70 (20%), Positives = 25/70 (35%)
Query: 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417
Y L + LG+ KA + + P L V + + G + + L + +
Sbjct: 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89
Query: 418 LDTADRYINS 427
+ D I S
Sbjct: 90 ETSDDETIQS 99
Score = 33.9 bits (78), Expect = 0.037
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIER--NQENT 239
+ G+ +A L +Q + + Y + LG+Y + ++ +I + E
Sbjct: 38 RTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97
Query: 240 LYYNK 244
Y +
Sbjct: 98 QSYKQ 102
Score = 30.5 bits (69), Expect = 0.63
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCY 85
H + L LGR E+ E + + + + + Y +AI Y
Sbjct: 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE-----------TIQSYKQAILFY 107
Query: 86 RNAL--KWE 92
+ L W+
Sbjct: 108 ADKLDETWK 116
Score = 30.5 bits (69), Expect = 0.63
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 520 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCY 579
H + L LGR E+ E + + + + + Y +AI Y
Sbjct: 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE-----------TIQSYKQAILFY 107
Query: 580 RNAL--KWE 586
+ L W+
Sbjct: 108 ADKLDETWK 116
Score = 28.1 bits (63), Expect = 4.3
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 9/67 (13%)
Query: 185 GDLEEAVKHLDRFKEQIHDKLTVEETYGALK------LKLGQYNEAMKHYESLIERNQEN 238
G +AV + +++ I L ++ LG+Y +A + +++ +
Sbjct: 4 GLEAQAVPY---YEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60
Query: 239 TLYYNKL 245
Sbjct: 61 QALRVFY 67
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 43.8 bits (103), Expect = 1e-04
Identities = 30/237 (12%), Positives = 63/237 (26%), Gaps = 23/237 (9%)
Query: 24 YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR------NDLKSHVCWHVYGLLQRSDKK 77
+ ++ G L+C G + +++ + + + +
Sbjct: 49 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108
Query: 78 YDEAIKCYRNALKWEHDNIQ--------IMRDLSLLQIQMRDLEG----YRETRYQLFML 125
A + A + ++ ++R + L L+ R L
Sbjct: 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168
Query: 126 RPTQRASWIGF-AMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDS 184
+P Q+ + D D A + L + S + + Q +
Sbjct: 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228
Query: 185 GDLEEAVKHLDRFK----EQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQE 237
GD A L H ++ LG++ A E L E +
Sbjct: 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 285
Score = 40.3 bits (94), Expect = 0.001
Identities = 26/195 (13%), Positives = 50/195 (25%), Gaps = 21/195 (10%)
Query: 27 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVY-----GLLQRSDKKYDEA 81
H E A++ G +EA + L + G + + +
Sbjct: 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 72
Query: 82 IKCYRNALK------WEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRA---- 131
+ + + H + + S + L+ ET+ + F L Q
Sbjct: 73 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132
Query: 132 ----SWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL 187
A D A + + +L GDL
Sbjct: 133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML--IQCSLARGDL 190
Query: 188 EEAVKHLDRFKEQIH 202
+ A L+R + +
Sbjct: 191 DNARSQLNRLENLLG 205
Score = 33.0 bits (75), Expect = 0.32
Identities = 41/321 (12%), Positives = 86/321 (26%), Gaps = 44/321 (13%)
Query: 137 AMAYHLLHDFDMACNILEAFRK-TQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLD 195
A + D A + +++ + + V+ G+L ++ +
Sbjct: 21 AQVAINDGNPDEA---ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQ 77
Query: 196 RFKEQ------IHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENT---------- 239
+ ++ H L + G A + E + E
Sbjct: 78 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137
Query: 240 ------LYY--NKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQ-FRTE 290
L + +L EA+ + S P+ + L S +
Sbjct: 138 VRIRAQLLWAWARLDEAEASAR-----SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN 192
Query: 291 IDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEP 350
L + + SN K ++I + A + + + E
Sbjct: 193 ARSQLNRLEN--LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 250
Query: 351 ASALLWVYHYLAQHYDHLGDTMKALNYINAAID------HTPTLIELFVTKGRIYKHAGD 404
W +A+ LG+ A + + L + ++Y AG
Sbjct: 251 FLQGQW--RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308
Query: 405 VLEAYKWLDEAQSLDTADRYI 425
+A + L +A L +I
Sbjct: 309 KSDAQRVLLDALKLANRTGFI 329
Score = 32.6 bits (74), Expect = 0.40
Identities = 32/223 (14%), Positives = 61/223 (27%), Gaps = 33/223 (14%)
Query: 340 FSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTL-----IELFVT 394
F L +E +E ++ AQ +A + I+ + ++
Sbjct: 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179
Query: 395 KGRIYKHAGDVLEAYKWLDEAQSLDTADRY-------INSKCAKYMLRANLIKEAEETCS 447
+ GD+ A L+ ++L +Y N Y A
Sbjct: 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 239
Query: 448 KFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLK 507
+ N + +Q W A A LG + E+ +
Sbjct: 240 HTAK---PEFANNHFLQGQWRNI--ARAQILLGEFEPAEIVLEEL-------------NE 281
Query: 508 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR 550
A+ + + L + GRK +A + L+
Sbjct: 282 NARSLRLMS---DLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321
Score = 32.3 bits (73), Expect = 0.56
Identities = 19/224 (8%), Positives = 54/224 (24%), Gaps = 35/224 (15%)
Query: 518 YAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR------NDLKSHVCWHVYGLLQRSDKK 571
+ ++ G L+C G + +++ + + + +
Sbjct: 49 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 108
Query: 572 YDEAIKCYRNALKWEHDNIQ--------IMRDLSLLQIQMRDLEG----YREGVSAMENL 619
A + A + ++ ++R + L L+ R G+ + +
Sbjct: 109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168
Query: 620 NEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRHFSEIIEDQFDFHTYCMRKMTLRSYV 679
Q + G L ++ + + +R
Sbjct: 169 QPQQQLQCLAMLIQCSLARGD----LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224
Query: 680 RLLR---------LEDVLRS----HPFYYTAARCAIQVYLRLHD 710
+ L + + F R + + L +
Sbjct: 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 268
Score = 30.3 bits (68), Expect = 2.0
Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 26/216 (12%)
Query: 521 HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVY-----GLLQRSDKKYDEA 575
H E A++ G +EA + L + G + + +
Sbjct: 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 72
Query: 576 IKCYRNALK------WEHDNIQIMRDLSLLQIQMRDLEG----YREGVSAMENLNEMQCM 625
+ + + H + + S + L+ + + + Q
Sbjct: 73 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132
Query: 626 WFQTECALAYQRLGRWGDTLKKCHEVDRHFSEIIEDQFDFHTYCMRKMTLRSYVR----- 680
+ + Q L W L + R E++ M ++ +
Sbjct: 133 MHEFLVRIRAQLLWAWAR-LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD 191
Query: 681 -----LLRLEDVLRSHPFYYTAARCAIQVYLRLHDR 711
L RLE++L + ++ A +V +
Sbjct: 192 NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 43.7 bits (103), Expect = 2e-04
Identities = 27/223 (12%), Positives = 72/223 (32%), Gaps = 26/223 (11%)
Query: 69 GLLQRSDKKYDEAIKCYRNALKW---EHDNIQIMRDLSLLQIQMRDLEGYR--------- 116
G+ + ++Y AIK ++ A D I+ + ++
Sbjct: 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169
Query: 117 -ETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLL 175
E + FA + L ++ A + F+K + +
Sbjct: 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDA---ISHFQKAYSMAEAEKQPQLMGRT 226
Query: 176 YQSM--VIQDSGDLEEAVKHLDR---FKEQIHDKLTVEETY---GALKLKLGQYNEAMKH 227
++ E+A+ + R E+ + ++ + Y + KLG+ ++A ++
Sbjct: 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEY 286
Query: 228 YE-SL-IERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKY 268
+ + + + +Y ++ K L + + + +
Sbjct: 287 HSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329
Score = 41.3 bits (97), Expect = 9e-04
Identities = 28/244 (11%), Positives = 68/244 (27%), Gaps = 24/244 (9%)
Query: 6 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR-----NDLK 60
K +K + E E + + + + +Y R+
Sbjct: 124 KFFKKAESKLIFVKDRI---EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180
Query: 61 SHV--CWHVYGLLQRSDKKYDEAIKCYRNALKW------EHDNIQIMRDLSLLQIQMRDL 112
+ C ++ K+Y++AI ++ A + + ++ L +
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240
Query: 113 E---GYRETRYQLFML---RPTQRASWIGFAMAYHLLHDFDMACNILE-AFRKTQQVTNS 165
E Y + +F P+ ++ ++ L D A +Q+ +
Sbjct: 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV 300
Query: 166 YDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAM 225
E L + D ++ L+ K D + + +A
Sbjct: 301 IYLSEFEFLKSLYLSGPDEEAIQGFFDFLES-KMLYADLEDFAIDVAKYYHERKNFQKAS 359
Query: 226 KHYE 229
++
Sbjct: 360 AYFL 363
Score = 35.2 bits (81), Expect = 0.075
Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 500 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR-----NDLK 554
K +K + E E + + + + +Y R+
Sbjct: 124 KFFKKAESKLIFVKDRI---EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180
Query: 555 SHV--CWHVYGLLQRSDKKYDEAIKCYRNALK 584
+ C ++ K+Y++AI ++ A
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYS 212
Score = 28.6 bits (64), Expect = 8.5
Identities = 24/253 (9%), Positives = 64/253 (25%), Gaps = 57/253 (22%)
Query: 358 YHYLAQHYDHLGDTMKALNYINAAI-------DHTPTLIELFVTKGRIYKHAGDVLEAYK 410
+ +++ Y ++ T +++Y A + L++ + +A
Sbjct: 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAIS 205
Query: 411 WLDEAQSL--------DTADRYIN-----------SKCAKYMLRANLIKEAEETCSKFTR 451
+A S+ N Y RA + E
Sbjct: 206 HFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-- 263
Query: 452 EGVSAMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQ 511
A + + +LG+ + + G+ ++++
Sbjct: 264 --PQAYFLI------------TQIHYKLGKIDKAHEY-------------HSKGMAYSQK 296
Query: 512 ILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKK 571
+ Y E L L+ + ++++ + V K
Sbjct: 297 AG-DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDV-AKYYHERKN 354
Query: 572 YDEAIKCYRNALK 584
+ +A + +
Sbjct: 355 FQKASAYFLKVEQ 367
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 43.4 bits (103), Expect = 2e-04
Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 39/169 (23%)
Query: 69 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128
G + +A+ + L I ++ D +
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRL-------LIAKEFG-------D--------------KAA 221
Query: 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM--VIQDSGD 186
+R ++ AY L +F+ A E ++KT + E S+ D
Sbjct: 222 ERRAYSNLGNAYIFLGEFETA---SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278
Query: 187 LEEAVKHLDR---FKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYE 229
E+A+ + + +++ D++ G LG +++AM E
Sbjct: 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327
Score = 41.1 bits (97), Expect = 9e-04
Identities = 37/267 (13%), Positives = 83/267 (31%), Gaps = 46/267 (17%)
Query: 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH----VCWHVYGLLQRSDKKYDEAIKC 84
LA++G L G + ++ + + G Y +A++
Sbjct: 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 65
Query: 85 YRNALKWE---HDNIQIMRDLSLLQIQMRDLEGYRE--TRYQ--LFMLR-----PTQRAS 132
+ + L D + + L ++ L + E Q L + R + +
Sbjct: 66 HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125
Query: 133 WIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYD-----FEHSELLLYQSM-------- 179
YH + + V N+ +E + L L ++
Sbjct: 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN-LSLVTALGDRAAQGR 184
Query: 180 -------VIQDSGDLEEAVKHLDR---FKEQIHDKLTVEETY---GALKLKLGQYNEAMK 226
G+ +AV ++ ++ DK Y G + LG++ A +
Sbjct: 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244
Query: 227 HYESLIERNQENTLYYNKLVEAKQLTN 253
+Y+ + ++ ++ VEA+ +
Sbjct: 245 YYKKTLLLARQ---LKDRAVEAQSCYS 268
Score = 34.9 bits (81), Expect = 0.078
Identities = 35/255 (13%), Positives = 69/255 (27%), Gaps = 39/255 (15%)
Query: 358 YHYLAQHYDHLGDTMKALNYINAAI----DHTPTLIELFVTKGRIYKHAGDVLEAYKWLD 413
+ GD +++ AA+ + TL ++ G Y + D +A ++
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 414 EAQSL--------DTADRYINSKCAKYMLRANLIKEAEETC------SKFTREGVSAMEN 459
+L A N +L EA C S+ + V
Sbjct: 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNF--DEAIVCCQRHLDISRELNDKVGEARA 125
Query: 460 LNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILT-NPKY 518
L + Y G+ + + + ++ L+
Sbjct: 126 LYNL---------GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176
Query: 519 AEH---GETLAMKGLTLNCLGRKEEAYEYVRRGLR-----NDLKSH-VCWHVYGLLQRSD 569
+ G G T LG +A + L D + + G
Sbjct: 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 236
Query: 570 KKYDEAIKCYRNALK 584
+++ A + Y+ L
Sbjct: 237 GEFETASEYYKKTLL 251
Score = 33.4 bits (77), Expect = 0.23
Identities = 45/376 (11%), Positives = 98/376 (26%), Gaps = 87/376 (23%)
Query: 69 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128
G + + A+ Q+ D T
Sbjct: 12 GERLCKSGDCRAGVSFFEAAV----------------QVGTED--------------LKT 41
Query: 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM--VIQDSGD 186
A + AY LHD+ A LE + + + E ++ ++ G+
Sbjct: 42 LSAIYSQLGNAYFYLHDYAKA---LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN 98
Query: 187 LEEAVKHLDR---FKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTL 240
+EA+ R +++DK+ G + G+ ++
Sbjct: 99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158
Query: 241 Y------YNK-LVEAKQLTNNDDIFQLLT------HYISKYPKATVPKRLSLNYVSGDQF 287
Y + L L + + + + + A +
Sbjct: 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA-------VIA-----H 206
Query: 288 RTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHF--SLQDE 345
+ G + NL + Y + + A ++ +L
Sbjct: 207 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE----------FETASE---YYKKTLLLA 253
Query: 346 GEVEPASALLWVYHYLAQHYDHLGDTMKALNY------INAAIDHTPTLIELFVTKGRIY 399
+++ + + L Y L D KA++Y I + + G Y
Sbjct: 254 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 313
Query: 400 KHAGDVLEAYKWLDEA 415
G+ +A + ++
Sbjct: 314 TALGNHDQAMHFAEKH 329
Score = 33.4 bits (77), Expect = 0.25
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 8 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL--RNDLKSHV-- 63
YK L A+Q+ A+ + G T L E+A +Y + L +LK +
Sbjct: 246 YKKTLLLARQLKDRAVEAQ---SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302
Query: 64 --CWHVYGLLQRSDKKYDEAIKCYRNALK 90
G + +D+A+ L+
Sbjct: 303 GRACWSLGNAYTALGNHDQAMHFAEKHLE 331
Score = 33.4 bits (77), Expect = 0.25
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 502 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL--RNDLKSHV-- 557
YK L A+Q+ A+ + G T L E+A +Y + L +LK +
Sbjct: 246 YKKTLLLARQLKDRAVEAQ---SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302
Query: 558 --CWHVYGLLQRSDKKYDEAIKCYRNALK 584
G + +D+A+ L+
Sbjct: 303 GRACWSLGNAYTALGNHDQAMHFAEKHLE 331
Score = 31.1 bits (71), Expect = 1.2
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 523 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH----VCWHVYGLLQRSDKKYDEAIKC 578
LA++G L G + ++ + + G Y +A++
Sbjct: 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 65
Query: 579 YRNALK 584
+ + L
Sbjct: 66 HHHDLT 71
Score = 29.9 bits (68), Expect = 2.6
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 502 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL--RNDLKSH--- 556
++ L AK+ + G LG E A EY ++ L LK
Sbjct: 206 HEQRLLIAKEFGDKA---AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262
Query: 557 -VCWHVYGLLQRSDKKYDEAIKCYRNALK 584
+ G + Y++AI + L
Sbjct: 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 42.7 bits (101), Expect = 3e-04
Identities = 34/256 (13%), Positives = 68/256 (26%), Gaps = 68/256 (26%)
Query: 8 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEY----------------- 50
+ + L A+ I + G TL LG +EA
Sbjct: 70 HHHDLTLARTIGDQL---GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126
Query: 51 ---------VRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRD 101
V V + A+ Y L ++
Sbjct: 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL-------SLVTA 179
Query: 102 LSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQ 161
L R Q ++ ++LL +F A + A +
Sbjct: 180 LG---------------------DRAAQGRAFGNLGNTHYLLGNFRDA---VIAHEQRLL 215
Query: 162 VTNSYDFEHSELLLYQSM--VIQDSGDLEEAVKHLDR---FKEQIHDKLTVEETY---GA 213
+ + + +E Y ++ G+ E A ++ + Q+ D+ ++ G
Sbjct: 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 275
Query: 214 LKLKLGQYNEAMKHYE 229
L Y +A+ ++
Sbjct: 276 TYTLLQDYEKAIDYHL 291
Score = 40.0 bits (94), Expect = 0.002
Identities = 38/261 (14%), Positives = 71/261 (27%), Gaps = 49/261 (18%)
Query: 8 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR-----NDLKSH 62
Y+ L + G G T LG +A + L D +
Sbjct: 170 YEENLSLVTALGDRA---AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 226
Query: 63 -VCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121
+ G +++ A + Y+ L + R L
Sbjct: 227 RRAYSNLGNAYIFLGEFETASEYYKKTL-------LLARQLK------------------ 261
Query: 122 LFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM-- 179
R + S Y LL D++ A ++ K + + E S+
Sbjct: 262 ---DRAVEAQSCYSLGNTYTLLQDYEKA---IDYHLKHLAIAQELNDRIGEGRACWSLGN 315
Query: 180 VIQDSGDLEEAVKHLDR---FKEQIHDKLTVEETY---GALKLKLGQ-YNEAMKHYESLI 232
G+ ++A+ ++ ++ DK L++ LG Y+
Sbjct: 316 AYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENT 375
Query: 233 ERNQENTLYYNKLVEAKQLTN 253
E + KL + N
Sbjct: 376 EIDSSLNGVRPKLGRRHSMEN 396
Score = 33.4 bits (77), Expect = 0.26
Identities = 37/255 (14%), Positives = 69/255 (27%), Gaps = 39/255 (15%)
Query: 358 YHYLAQHYDHLGDTMKALNYINAAI----DHTPTLIELFVTKGRIYKHAGDVLEAYKWLD 413
+ GD +++ AA+ + TL ++ G Y + D +A ++
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 414 EAQSL--------DTADRYINSKCAKYMLRANLIKEAEETC------SKFTREGVSAMEN 459
+L A N +L EA C S+ + V
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNF--DEAIVCCQRHLDISRELNDKVGEARA 129
Query: 460 LNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQIL----TN 515
L + Y G+ + + + F ++ L
Sbjct: 130 LYNL---------GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180
Query: 516 PKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR-----NDLKSH-VCWHVYGLLQRSD 569
A G G T LG +A + L D + + G
Sbjct: 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240
Query: 570 KKYDEAIKCYRNALK 584
+++ A + Y+ L
Sbjct: 241 GEFETASEYYKKTLL 255
Score = 32.7 bits (75), Expect = 0.40
Identities = 51/424 (12%), Positives = 119/424 (28%), Gaps = 90/424 (21%)
Query: 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSH----VCWHVYGLLQRSDKKYDEAIKC 84
LA++G L G + ++ + + G Y +A++
Sbjct: 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 69
Query: 85 YRNALKWE---HDNIQIMRDLSLLQIQMRDLEGYRE--TRYQ--LFMLR-----PTQRAS 132
+ + L D + + L ++ L + E Q L + R + +
Sbjct: 70 HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129
Query: 133 WIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVK 192
YH + ++V ++ AV
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ---------------------AAVD 168
Query: 193 HLDR---FKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLV 246
+ + D+ + G LG + +A+ +E + +E + +K
Sbjct: 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---FGDKAA 225
Query: 247 EAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPL 306
E + +N + + L ++ A Y ++ + +
Sbjct: 226 ERRAYSNLGNAYIFL----GEFETA-------SEY-----YKKTLLLARQLKDRAVEAQS 269
Query: 307 FVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHF--SLQDEGEVEPASALLWVYHYLAQH 364
+L + Y+ + Y +A+ + L E+ L
Sbjct: 270 CYSLGNTYTLLQD----------YEKAID---YHLKHLAIAQELNDRIGEGRACWSLGNA 316
Query: 365 YDHLGDTMKALNYINAAI-------DHT------PTLIELFVTKGRIYKHAGDVLEAYKW 411
Y LG+ +A+++ + D + L +L + G Y ++
Sbjct: 317 YTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTE 376
Query: 412 LDEA 415
+D +
Sbjct: 377 IDSS 380
Score = 31.5 bits (72), Expect = 0.89
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 502 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL--RNDLKSH--- 556
YK L A+Q+ A+ + G T L E+A +Y + L +L
Sbjct: 250 YKKTLLLARQLKDRAVEAQ---SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306
Query: 557 -VCWHVYGLLQRSDKKYDEAIKCYRNALK 584
G + +D+A+ L+
Sbjct: 307 GRACWSLGNAYTALGNHDQAMHFAEKHLE 335
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 41.8 bits (99), Expect = 3e-04
Identities = 30/210 (14%), Positives = 63/210 (30%), Gaps = 25/210 (11%)
Query: 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 93
G+ L LGR + A R L+ + + + Q + A++ + +
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 94 DNIQ-------IMRDLSLLQIQMRDLEGYRE---TRY-QLFMLRPTQRASWIGFAMAYHL 142
+ L +GY E + + P + + Y L
Sbjct: 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130
Query: 143 LHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIH 202
L + D A + ++ + S L + + G L+EA+ + + +
Sbjct: 131 LGERDKA---EASLKQALAL-EDTPEIRSAL----AELYLSMGRLDEALAQ---YAKALE 179
Query: 203 DKLTVEETY---GALKLKLGQYNEAMKHYE 229
+ + L G+ EA +
Sbjct: 180 QAPKDLDLRVRYASALLLKGKAEEAARAAA 209
Score = 40.2 bits (95), Expect = 0.001
Identities = 10/57 (17%), Positives = 21/57 (36%)
Query: 528 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
G+ L LGR + A R L+ + + + Q + A++ + +
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67
Score = 36.4 bits (85), Expect = 0.016
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR---NDLKSHV------- 63
F + + NP+ E L T LG A E + + L ++
Sbjct: 28 FERALKENPQDPE---ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84
Query: 64 -CWHVYGLLQRSDKKYDEAIKCYRNALK 90
+ +R ++A+ ++A +
Sbjct: 85 ALYRQAEDRERGKGYLEQALSVLKDAER 112
Score = 36.4 bits (85), Expect = 0.016
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 508 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLR---NDLKSHV------- 557
F + + NP+ E L T LG A E + + L ++
Sbjct: 28 FERALKENPQDPE---ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV 84
Query: 558 -CWHVYGLLQRSDKKYDEAIKCYRNALK 584
+ +R ++A+ ++A +
Sbjct: 85 ALYRQAEDRERGKGYLEQALSVLKDAER 112
Score = 35.6 bits (83), Expect = 0.033
Identities = 11/60 (18%), Positives = 16/60 (26%)
Query: 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 93
+GR +EA + L K Y K +EA + H
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
Score = 35.6 bits (83), Expect = 0.033
Identities = 11/60 (18%), Positives = 16/60 (26%)
Query: 528 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 587
+GR +EA + L K Y K +EA + H
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
Score = 35.2 bits (82), Expect = 0.038
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 8/85 (9%)
Query: 14 FAKQILTNPKYAE--------HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCW 65
+ P+Y + G E+A ++ R + +
Sbjct: 62 GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121
Query: 66 HVYGLLQRSDKKYDEAIKCYRNALK 90
GL+ + D+A + AL
Sbjct: 122 LQRGLVYALLGERDKAEASLKQALA 146
Score = 35.2 bits (82), Expect = 0.038
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 8/85 (9%)
Query: 508 FAKQILTNPKYAE--------HGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCW 559
+ P+Y + G E+A ++ R + +
Sbjct: 62 GKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLH 121
Query: 560 HVYGLLQRSDKKYDEAIKCYRNALK 584
GL+ + D+A + AL
Sbjct: 122 LQRGLVYALLGERDKAEASLKQALA 146
Score = 34.8 bits (81), Expect = 0.064
Identities = 25/199 (12%), Positives = 45/199 (22%), Gaps = 76/199 (38%)
Query: 69 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128
G+ + +YD A+ + ALK P
Sbjct: 12 GVQLYALGRYDAALTLFERALK----------------------------------ENPQ 37
Query: 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHS-------ELLLYQSMVI 181
+ A L + A LE + T Y + L
Sbjct: 38 DPEALYWLARTQLKLGLVNPA---LENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRE 94
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLK----------------LGQYNEAM 225
+ G LE+A+ L A ++ LG+ ++A
Sbjct: 95 RGKGYLEQALSVLKD----------------AERVNPRYAPLHLQRGLVYALLGERDKAE 138
Query: 226 KHYESLIERNQENTLYYNK 244
+ + +
Sbjct: 139 ASLKQALALEDTPEIRSAL 157
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 42.2 bits (99), Expect = 3e-04
Identities = 22/181 (12%), Positives = 47/181 (25%), Gaps = 36/181 (19%)
Query: 69 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128
+ ++ K+ ++A Y + R L + Q
Sbjct: 43 AVAFKNAKQLEQAKDAYLQEAE--------------AHANNRSLFHAAKAFEQA------ 82
Query: 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLE 188
M L A +E + + + L ++ + + DL
Sbjct: 83 --------GMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEPLDLS 132
Query: 189 EAVKHLDR---FKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTLYY 242
+AV + E E L ++ +++EA + +E Y
Sbjct: 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192
Query: 243 N 243
Sbjct: 193 T 193
Score = 37.2 bits (86), Expect = 0.013
Identities = 29/225 (12%), Positives = 65/225 (28%), Gaps = 37/225 (16%)
Query: 218 LGQYNEAMKHYESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRL 277
Q +A Y E + N + AK + + L + P+A
Sbjct: 49 AKQLEQAKDAYLQEAEAHANN---RSLFHAAKAFEQAGMMLKDL----QRMPEAV----- 96
Query: 278 SLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKT 337
Y+ +G L + + V Y +A +
Sbjct: 97 -------QYIEKASVMYVENGTPDTAAMALDRAGKLMEPLD----LSKAVHLYQQAAAV- 144
Query: 338 GHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAI------DHTPTLIEL 391
++E + A+ + ++ +A + ++ PT +
Sbjct: 145 ----FENEERLRQAAE---LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197
Query: 392 FVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRA 436
+ + + H D + A K + E+ S+ + + +L+A
Sbjct: 198 CIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQA 242
Score = 33.3 bits (76), Expect = 0.22
Identities = 27/213 (12%), Positives = 60/213 (28%), Gaps = 20/213 (9%)
Query: 6 KQYKNGLKFAKQILT--NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV 63
+ K+ K P Y A + + E+A + + +
Sbjct: 12 EHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS 71
Query: 64 CWHV------YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ-----IQMRDL 112
+H G++ + ++ EA++ A +N L ++ DL
Sbjct: 72 LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDL 131
Query: 113 EG----YRE--TRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSY 166
Y++ ++ + FD A L+ + + +Y
Sbjct: 132 SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191
Query: 167 DFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKE 199
+ + + Q +V D A K +
Sbjct: 192 PTCY-KKCIAQVLVQLHRADYVAAQKCVRESYS 223
Score = 31.8 bits (72), Expect = 0.65
Identities = 26/212 (12%), Positives = 61/212 (28%), Gaps = 36/212 (16%)
Query: 389 IELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSK 448
+ +K+A + +A + ++ A ++A
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAE-------AHANNRSLFHAAKAFEQAGMMLKD 88
Query: 449 FTREGVSAMENLNEMQCMWFQTEC----ALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKN 504
+ A++ + + M+ + A+A R G K E
Sbjct: 89 -LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG--------------KLMEPLDLSK 133
Query: 505 GLKFAKQILTNPKYAEH----GETLAMKGLTLNCLGRKEEAYEYVRR--GLRNDLKSH-- 556
+ +Q + E E + L + +EA +++ + +++++
Sbjct: 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193
Query: 557 --VCWHVYGLLQRSDKKYDEAIKCYRNALKWE 586
L+Q Y A KC R +
Sbjct: 194 CYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225
Score = 31.4 bits (71), Expect = 0.89
Identities = 27/234 (11%), Positives = 52/234 (22%), Gaps = 45/234 (19%)
Query: 1 KCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLK 60
+ ++ A + + + L +A ++
Sbjct: 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFEN 147
Query: 61 SHV------CWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG 114
L +K+DEA +
Sbjct: 148 EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS------------------------ 183
Query: 115 YRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELL 174
Y+ PT I + D+ A + R++ + E L
Sbjct: 184 ----MYKEMENYPTCYKKCIAQVLVQLHRADYVAA---QKCVRESYSIPGFSGSEDCAAL 236
Query: 175 --LYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMK 226
L Q+ QD L + +D + A+ LK+ K
Sbjct: 237 EDLLQAYDEQDEEQLLRVCRS-PLVTYMDNDYAKL-----AISLKVPGGGGGKK 284
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 40.9 bits (97), Expect = 4e-04
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 4/89 (4%)
Query: 3 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
+ +Y + + + + G+ G + E + R L + +
Sbjct: 19 AKAGRYSQAVMLLEQVYDADAFDVD---VALHLGIAYVKTGAVDRGTELLERSLADAPDN 75
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALK 90
V GL +KYD A+ +
Sbjct: 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAE 104
Score = 40.9 bits (97), Expect = 4e-04
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 4/89 (4%)
Query: 497 YEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555
+ +Y + + + + G+ G + E + R L + +
Sbjct: 19 AKAGRYSQAVMLLEQVYDADAFDVD---VALHLGIAYVKTGAVDRGTELLERSLADAPDN 75
Query: 556 HVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
V GL +KYD A+ +
Sbjct: 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAE 104
Score = 40.5 bits (96), Expect = 5e-04
Identities = 25/203 (12%), Positives = 55/203 (27%), Gaps = 47/203 (23%)
Query: 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 93
KG++ GR +A + + D G+ D + +L
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--- 70
Query: 94 DNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNIL 153
P + Y + +D+A +
Sbjct: 71 -------------------------------DAPDNVKVATVLGLTYVQVQKYDLA---V 96
Query: 154 EAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY-- 211
K + L + + + G +EA+ FK + + + +
Sbjct: 97 PLLIKVAEANPINFNVRFRL----GVALDNLGRFDEAIDS---FKIALGLRPNEGKVHRA 149
Query: 212 -GALKLKLGQYNEAMKHYESLIE 233
++G++ EA+ H++ E
Sbjct: 150 IAFSYEQMGRHEEALPHFKKANE 172
Score = 40.1 bits (95), Expect = 7e-04
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
K NP G+ L+ LGR +EA + + L
Sbjct: 99 LIKVAEANPINFN---VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155
Query: 74 SDKKYDEAIKCYRNALK 90
+++EA+ ++ A +
Sbjct: 156 QMGRHEEALPHFKKANE 172
Score = 40.1 bits (95), Expect = 7e-04
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 508 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567
K NP G+ L+ LGR +EA + + L
Sbjct: 99 LIKVAEANPINFN---VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155
Query: 568 SDKKYDEAIKCYRNALK 584
+++EA+ ++ A +
Sbjct: 156 QMGRHEEALPHFKKANE 172
Score = 39.4 bits (93), Expect = 0.002
Identities = 11/64 (17%), Positives = 21/64 (32%)
Query: 528 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEH 587
KG++ GR +A + + D G+ D + +L
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 588 DNIQ 591
DN++
Sbjct: 74 DNVK 77
Score = 34.7 bits (81), Expect = 0.050
Identities = 18/194 (9%), Positives = 41/194 (21%), Gaps = 47/194 (24%)
Query: 55 LRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEG 114
+ ND V + G+ +Y +A+
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYD------------------------ 36
Query: 115 YRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELL 174
+ +AY D E ++ + L
Sbjct: 37 ----------ADAFDVDVALHLGIAYVKTGAVDRG---TELLERSLADAPDNVKVATVL- 82
Query: 175 LYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESL 231
+ + AV + G LG+++EA+ ++
Sbjct: 83 ---GLTYVQVQKYDLAVPL---LIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA 136
Query: 232 IERNQENTLYYNKL 245
+ + +
Sbjct: 137 LGLRPNEGKVHRAI 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 40.3 bits (94), Expect = 4e-04
Identities = 10/108 (9%), Positives = 30/108 (27%), Gaps = 3/108 (2%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
F + + + G +G+ + A G D+
Sbjct: 44 FQALCVLDHYDSRF---FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100
Query: 74 SDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQ 121
+ EA A + + + + + + ++ +E +++
Sbjct: 101 QXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKHE 148
Score = 39.9 bits (93), Expect = 7e-04
Identities = 19/146 (13%), Positives = 41/146 (28%), Gaps = 15/146 (10%)
Query: 478 RLGRWGDTLKKCHEVDRKCYE------HKQYKNGL------KFAKQILTNPKYAEHGETL 525
LG G T+ +E+ E QY++G F + + +
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF---F 58
Query: 526 AMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKW 585
G +G+ + A G D+ + EA A +
Sbjct: 59 LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118
Query: 586 EHDNIQIMRDLSLLQIQMRDLEGYRE 611
+ + + + + ++ +E
Sbjct: 119 IANXPEFXELSTRVSSMLEAIKLKKE 144
Score = 39.5 bits (92), Expect = 8e-04
Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 11/153 (7%)
Query: 77 KYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGF 136
+ D ++ + L+ Q Q E L +L ++G
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 137 AMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDR 196
+ +D+A + ++ D + + + G+L EA L
Sbjct: 62 GACRQAMGQYDLA---IHSYSYGAV----MDIXEPRFPFHAAECLLQXGELAEAESGLFL 114
Query: 197 FKEQIHDKLTVEETYGALKLKLGQYNEAMKHYE 229
+E I + + L ++ EA+K +
Sbjct: 115 AQELIAN----XPEFXELSTRVSSMLEAIKLKK 143
Score = 38.7 bits (90), Expect = 0.002
Identities = 14/92 (15%), Positives = 28/92 (30%)
Query: 26 EHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCY 85
+ E L G E+A+ + D + G +++ +YD AI Y
Sbjct: 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSY 78
Query: 86 RNALKWEHDNIQIMRDLSLLQIQMRDLEGYRE 117
+ + + +Q +L
Sbjct: 79 SYGAVMDIXEPRFPFHAAECLLQXGELAEAES 110
Score = 36.0 bits (83), Expect = 0.013
Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 14/137 (10%)
Query: 321 KIIQDLVESYVEALSKTGHFSLQDEGEVEPASALL-----------WVYHYLAQHYDHLG 369
++ ++ +E L + G E A + + L +G
Sbjct: 11 AMLNEISSDTLEQLYSLAF-NQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG 69
Query: 370 DTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSL--DTADRYINS 427
A++ + G++ EA L AQ L + + S
Sbjct: 70 QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129
Query: 428 KCAKYMLRANLIKEAEE 444
ML A +K+ +
Sbjct: 130 TRVSSMLEAIKLKKEMK 146
Score = 29.9 bits (67), Expect = 1.7
Identities = 11/70 (15%), Positives = 25/70 (35%)
Query: 185 GDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNK 244
G L + E D L + + + G Y +A +++L + ++ ++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 245 LVEAKQLTNN 254
L +Q
Sbjct: 61 LGACRQAMGQ 70
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 39.0 bits (92), Expect = 6e-04
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 21 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRR--GLRNDLKSHVCWHVYGLLQRSDKKY 78
+P+ ++ MKG L L R EEA + + D + W R +
Sbjct: 36 DPEESK---YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGK 92
Query: 79 DEAIKCYRNALKWEHDN 95
+ + K EH +
Sbjct: 93 EVEAEIAEARAKLEHHH 109
Score = 39.0 bits (92), Expect = 6e-04
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 515 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRR--GLRNDLKSHVCWHVYGLLQRSDKKY 572
+P+ ++ MKG L L R EEA + + D + W R +
Sbjct: 36 DPEESK---YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGK 92
Query: 573 DEAIKCYRNALKWEHDN 589
+ + K EH +
Sbjct: 93 EVEAEIAEARAKLEHHH 109
Score = 37.8 bits (89), Expect = 0.002
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 21 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 80
+ E ++G+ G E+ + + ++ D + W + G + ++Y+E
Sbjct: 2 VDQNPE---EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEE 58
Query: 81 AIKCYRNALKWEHD 94
A+ CY + D
Sbjct: 59 AVDCYNYVINVIED 72
Score = 37.8 bits (89), Expect = 0.002
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 515 NPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDE 574
+ E ++G+ G E+ + + ++ D + W + G + ++Y+E
Sbjct: 2 VDQNPE---EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEE 58
Query: 575 AIKCYRNALKWEHD 588
A+ CY + D
Sbjct: 59 AVDCYNYVINVIED 72
Score = 27.0 bits (61), Expect = 8.3
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 212 GALKLKLGQYNEAMKHYESLIERNQENTLYYN 243
G L+ G Y E++ +E I+ + E + Y+
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWL 44
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 38.7 bits (91), Expect = 0.002
Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 39/169 (23%)
Query: 69 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128
G + +A+ + L I ++ D +
Sbjct: 16 GNTHYLLGNFRDAVIAHEQRL-------LIAKEFG-------D--------------KAA 47
Query: 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM--VIQDSGD 186
+R ++ AY L +F+ A E ++KT + E S+ D
Sbjct: 48 ERIAYSNLGNAYIFLGEFETA---SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 104
Query: 187 LEEAVKHLDR---FKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYE 229
E+A+ + + +++ D++ G LG +++AM E
Sbjct: 105 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153
Score = 29.4 bits (67), Expect = 2.2
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 529 GLTLNCLGRKEEAYEYVRRGL--RNDLKSHV----CWHVYGLLQRSDKKYDEAIKCYRNA 582
G T L E+A +Y + L +LK + G + +D+A+
Sbjct: 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155
Query: 583 LK 584
L+
Sbjct: 156 LE 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 39.2 bits (92), Expect = 0.002
Identities = 29/208 (13%), Positives = 59/208 (28%), Gaps = 44/208 (21%)
Query: 28 GETLAMKGLTLNCLGRKEEAYEYVRRGLR------NDLKSHVCWHVYGLLQRSDKKYDEA 81
M G + R +EA + + + H H G+++R +D A
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYH 141
+C+ +++ L A+ A
Sbjct: 86 RRCFLEER-------ELLASL-----------PED---------PLAASANAYEVATVAL 118
Query: 142 LLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSM--VIQDSGDLEEAVKHLDR--- 196
D A + + K+ D + + ++ + + Q +L EA +H R
Sbjct: 119 HFGDLAGA---RQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175
Query: 197 FKEQIHDKLTVEETY---GALKLKLGQY 221
++ D V E L+ +
Sbjct: 176 IFAELEDSEAVNELMTRLNGLEHHHHHH 203
Score = 36.5 bits (85), Expect = 0.017
Identities = 27/199 (13%), Positives = 64/199 (32%), Gaps = 46/199 (23%)
Query: 46 EAYEY------VRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIM 99
EA++Y + L + + + G + ++DEA ++ +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ--------- 54
Query: 100 RDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKT 159
+ D +Q+ M + ++D A F +
Sbjct: 55 -----QAQKSGDHTAEHRALHQV--------------GMVERMAGNWDAA---RRCFLEE 92
Query: 160 QQVTNSY-DFEHSELLLYQSM--VIQDSGDLEEAVKHLDR---FKEQIHDKLTVEETY-- 211
+++ S + + + V GDL A + ++ + +Q D++ + +
Sbjct: 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152
Query: 212 -GALKLKLGQYNEAMKHYE 229
G L + EA +H+
Sbjct: 153 LGDLAQQEKNLLEAQQHWL 171
Score = 31.1 bits (71), Expect = 0.92
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 529 GLTLNCLGRKEEAYEYVRRGLR-----NDLKSH-VCWHVYGLLQRSDKKYDEAIKCYRNA 582
G A + + L +D + + G L + +K EA + + A
Sbjct: 114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173
Query: 583 LK 584
Sbjct: 174 RD 175
Score = 30.7 bits (70), Expect = 1.2
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 522 GETLAMKGLTLNCLGRKEEAYEYVRRGLR------NDLKSHVCWHVYGLLQRSDKKYDEA 575
M G + R +EA + + + H H G+++R +D A
Sbjct: 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85
Query: 576 IKCYRNALK 584
+C+ +
Sbjct: 86 RRCFLEERE 94
Score = 29.2 bits (66), Expect = 3.7
Identities = 7/63 (11%), Positives = 15/63 (23%), Gaps = 7/63 (11%)
Query: 529 GLTLNCLGRKEEAYEYVRRGLR-------NDLKSHVCWHVYGLLQRSDKKYDEAIKCYRN 581
G+ G + A + L + + + A + Y
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 582 ALK 584
+L
Sbjct: 133 SLV 135
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 39.8 bits (93), Expect = 0.002
Identities = 57/382 (14%), Positives = 115/382 (30%), Gaps = 77/382 (20%)
Query: 8 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHV 67
Y + + F Q++ + Y E G+T + L E + + L +
Sbjct: 54 YYSLMCFRHQLMLD--YLEPGKTYGNRPTVTELLETIETPQKKL-----TGLLKYYSLFF 106
Query: 68 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRP 127
G+ + K+Y EAI YR A K + D E +++
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEK--------------ELPFVSDDIEKAEFHFKV----- 147
Query: 128 TQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL 187
A AY+ + ++ + Q Y + L + D
Sbjct: 148 ---------AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHY 198
Query: 188 EEAVKHLDR---FKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTLY 241
++A+ HL+ I + + + + G A++H++ + ++E
Sbjct: 199 DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK--- 255
Query: 242 YNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQFRTEIDKYLRHGFHK 301
+ K L + KA L + H F+K
Sbjct: 256 -VPDLLPKVLFGLSWTLCKA----GQTQKAFQFIEEGL----------DHITARSHKFYK 300
Query: 302 GVPPLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYL 361
LF+ L+++Y T + I DL+ + + K H ++
Sbjct: 301 E---LFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEA------------CARSA 342
Query: 362 AQHYDHLGDTMKALNYINAAID 383
A ++ +A + +
Sbjct: 343 AAVFESSCHFEQAAAFYRKVLK 364
Score = 38.3 bits (89), Expect = 0.008
Identities = 24/246 (9%), Positives = 58/246 (23%), Gaps = 29/246 (11%)
Query: 6 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGL-------RND 58
Y+ K + E E + + + ++ + L
Sbjct: 122 GYYREAEKELPFV---SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178
Query: 59 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNAL---KWEHDNIQIMRDLSLLQIQMRDLEGY 115
+++ V K YD+A+ AL ++ I L +
Sbjct: 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238
Query: 116 RE--------TRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILE-AFRKTQQVTNSY 166
+ + + G + A +E ++ +
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298
Query: 167 DFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKL---KLGQYNE 223
E L D + + + + E+ + +E + + +
Sbjct: 299 YKELFLFLQAVYKETVDERKIHDLLSYF----EKKNLHAYIEACARSAAAVFESSCHFEQ 354
Query: 224 AMKHYE 229
A Y
Sbjct: 355 AAAFYR 360
Score = 35.2 bits (81), Expect = 0.066
Identities = 45/401 (11%), Positives = 109/401 (27%), Gaps = 91/401 (22%)
Query: 216 LKLGQYNEAMKHYESL------IERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYP 269
++ +A + +E +Q+ +YY+ QL+ Y+
Sbjct: 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYS---------LMCFRHQLMLDYLEPGK 73
Query: 270 KATVPKRLSLNYVSGDQFRTEIDKYLRHGFHKGVPPLFVNLRSLYSNTEKCKIIQDLVES 329
++ + + + ++ L++ + ++ + +
Sbjct: 74 TYGNRPTVTELLETIETPQKKLTGLLKYYSLF-------FRGMYEFDQKE---YVEAIGY 123
Query: 330 YVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAID------ 383
Y EA + ++E A + +A+ Y H+ T ++ +I A+D
Sbjct: 124 YREAEKE----LPFVSDDIEKAEF----HFKVAEAYYHMKQTHVSMYHILQALDIYQNHP 175
Query: 384 -HTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA--------QSLDTADRYIN-------- 426
++ I+ Y +A L+ A A +N
Sbjct: 176 LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS 235
Query: 427 ---SKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALAYQRLGRWG 483
++ +A + K + L + + G+
Sbjct: 236 GDDQMAVEHFQKAAKVSR-----EKVPDLLPKVLFGL------------SWTLCKAGQT- 277
Query: 484 DTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYE 543
+K ++ + GL ++ Y E L + +
Sbjct: 278 ----------QKAFQF--IEEGLDHITAR-SHKFYKELFLFLQAVYKETVDERKIHDLLS 324
Query: 544 YVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
Y + + + S +++A YR LK
Sbjct: 325 YFEKKNLHAYIEACA-RSAAAVFESSCHFEQAAAFYRKVLK 364
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 37.8 bits (89), Expect = 0.003
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 73
+ K + +P+ AE G G +EA EY ++ L D +S W+ G
Sbjct: 58 YQKALELDPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114
Query: 74 SDKKYDEAIKCYRNALK 90
YDEAI+ Y+ AL+
Sbjct: 115 KQGDYDEAIEYYQKALE 131
Score = 37.8 bits (89), Expect = 0.003
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 508 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQR 567
+ K + +P+ AE G G +EA EY ++ L D +S W+ G
Sbjct: 58 YQKALELDPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114
Query: 568 SDKKYDEAIKCYRNALK 584
YDEAI+ Y+ AL+
Sbjct: 115 KQGDYDEAIEYYQKALE 131
Score = 34.3 bits (80), Expect = 0.038
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 90
G G +EA EY ++ L D +S W+ G YDEAI+ Y+ AL+
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Score = 34.3 bits (80), Expect = 0.038
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 528 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
G G +EA EY ++ L D +S W+ G YDEAI+ Y+ AL+
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Score = 28.9 bits (66), Expect = 2.4
Identities = 33/173 (19%), Positives = 61/173 (35%), Gaps = 47/173 (27%)
Query: 69 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPT 128
G YDEAI+ Y+ AL+ L P
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALE----------------------------------LDPR 33
Query: 129 QRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLE 188
+W AY+ D+D A +E ++K ++ L GD +
Sbjct: 34 SAEAWYNLGNAYYKQGDYDEA---IEYYQKALELDPRSAEAWYNL----GNAYYKQGDYD 86
Query: 189 EAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQEN 238
EA+++ +++ + E + G K G Y+EA+++Y+ +E + +
Sbjct: 87 EAIEY---YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 27.4 bits (62), Expect = 8.0
Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQEN 238
GD +EA+++ +++ + E + G K G Y+EA+++Y+ +E + +
Sbjct: 12 YKQGDYDEAIEY---YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 239 TLYYN 243
+
Sbjct: 69 AEAWY 73
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 38.9 bits (91), Expect = 0.003
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 2 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 61
+ K +K L + ++ G L EA + R + D
Sbjct: 16 AADKKDWKGALDAFSAV--QDPHSR---ICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 70
Query: 62 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGY 115
V + G+L +KYD AIK + AL N I + LQ ++ E
Sbjct: 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124
Score = 38.9 bits (91), Expect = 0.003
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 496 CYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKS 555
+ K +K L + ++ G L EA + R + D
Sbjct: 16 AADKKDWKGALDAFSAV--QDPHSR---ICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 70
Query: 556 HVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGY 609
V + G+L +KYD AIK + AL N I + LQ ++ E
Sbjct: 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124
Score = 37.0 bits (86), Expect = 0.011
Identities = 17/162 (10%), Positives = 42/162 (25%), Gaps = 31/162 (19%)
Query: 473 ALAYQRLGRWGDTLK---KCHEVDRKCY--------EHKQYKNGLK-FAKQILTNPKYAE 520
+ W L + + K K F + I + A
Sbjct: 13 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72
Query: 521 HGETLAMKGLTLNCLGRKEEAYE----------------YVRRGLRNDLKSHVCWHVYGL 564
+G+ + + A + Y GL+ L + +
Sbjct: 73 ---AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129
Query: 565 LQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDL 606
+ +++ +A + A + + D ++ + + L
Sbjct: 130 MYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKL 171
Score = 37.0 bits (86), Expect = 0.011
Identities = 13/115 (11%), Positives = 35/115 (30%), Gaps = 19/115 (16%)
Query: 14 FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYE----------------YVRRGLRN 57
F + I + A +G+ + + A + Y GL+
Sbjct: 60 FTRSINRDKHLAV---AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 116
Query: 58 DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDL 112
L + + + +++ +A + A + + D ++ + + L
Sbjct: 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKL 171
Score = 33.9 bits (78), Expect = 0.11
Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 17/128 (13%)
Query: 137 AMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDR 196
+ D+ A L+AF Q HS + + ++ EA K
Sbjct: 13 GVLAADKKDWKGA---LDAFSAVQD-------PHSRICFNIGCMYTILKNMTEAEKA--- 59
Query: 197 FKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQEN-TLYYNKLVEAKQLT 252
F I+ + Y G L + +Y+ A+K + + + + N + Y L +L
Sbjct: 60 FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 119
Query: 253 NNDDIFQL 260
+ ++ +
Sbjct: 120 ACEVLYNI 127
Score = 32.0 bits (73), Expect = 0.49
Identities = 30/231 (12%), Positives = 54/231 (23%), Gaps = 68/231 (29%)
Query: 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417
D AL+ +A D + G +Y ++ EA K + +
Sbjct: 9 LWNEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSIN 65
Query: 418 LDT--ADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCMWFQTECALA 475
D A Y Y A + + A+ L Q +
Sbjct: 66 RDKHLAVAYFQRGMLYYQT--EKYDLAIKDLKE-------ALIQLRGNQ--------LID 108
Query: 476 YQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCL 535
Y+ LG + K + + N
Sbjct: 109 YKILG-----------LQFKLFACEVLYN-----------------------IAFMYAKK 134
Query: 536 GRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWE 586
++A E + + K D+A++C +E
Sbjct: 135 EEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYE 173
Score = 30.1 bits (68), Expect = 2.2
Identities = 13/70 (18%), Positives = 25/70 (35%)
Query: 357 VYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQ 416
+ + Y L + +A +I+ L + +G +Y A K L EA
Sbjct: 39 ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEAL 98
Query: 417 SLDTADRYIN 426
++ I+
Sbjct: 99 IQLRGNQLID 108
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 36.2 bits (84), Expect = 0.006
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 3/83 (3%)
Query: 13 KFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQ 72
+ + TL G T + + A ++R L D V W G
Sbjct: 7 RLEAMLAQGTDNMLLRFTL---GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 73 RSDKKYDEAIKCYRNALKWEHDN 95
+ A + + + L
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSR 86
Score = 36.2 bits (84), Expect = 0.006
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 3/83 (3%)
Query: 507 KFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQ 566
+ + TL G T + + A ++R L D V W G
Sbjct: 7 RLEAMLAQGTDNMLLRFTL---GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 567 RSDKKYDEAIKCYRNALKWEHDN 589
+ A + + + L
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSR 86
Score = 33.1 bits (76), Expect = 0.068
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 539 EEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 598
+ E + L + + G +++D A+ R AL ++ + L
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 599 LQIQMRDLEG----YREGVSAMENLNEMQCMWFQTECALAYQRLGR 640
D G + G++A ++ + Q E + +RL R
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQ---VVKELQVFLRRLAR 104
Score = 30.4 bits (69), Expect = 0.58
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 347 EVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVL 406
+ LL L + Y AL ++ AA+D PT + G+ + GD
Sbjct: 13 AQGTDNMLLR--FTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70
Query: 407 EAYKWLDEAQSLDTA 421
A + + + +
Sbjct: 71 GARQAWESGLAAAQS 85
Score = 29.6 bits (67), Expect = 1.1
Identities = 11/70 (15%), Positives = 22/70 (31%)
Query: 45 EEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSL 104
+ E + L + + G +++D A+ R AL ++ + L
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 105 LQIQMRDLEG 114
D G
Sbjct: 62 TLQGQGDRAG 71
Score = 29.2 bits (66), Expect = 1.5
Identities = 10/70 (14%), Positives = 29/70 (41%)
Query: 187 LEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLV 246
++ + L+ Q D + + T G + Q++ A+ H + ++ + ++ + L
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 247 EAKQLTNNDD 256
+ Q +
Sbjct: 61 KTLQGQGDRA 70
Score = 29.2 bits (66), Expect = 1.8
Identities = 9/57 (15%), Positives = 17/57 (29%)
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQEN 238
+ + A+ HL + + G G A + +ES + Q
Sbjct: 30 AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 38.2 bits (88), Expect = 0.009
Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 13/116 (11%)
Query: 469 QTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMK 528
+ E AL +K ++ + + + A
Sbjct: 236 RAEKALVDIVRHSQHPLDEKQLAALNTEIDN---------IVTLPELNNLSIIYQIKA-- 284
Query: 529 GLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
++ G+ +E+Y+ + G+ + S + + + G + EA Y A
Sbjct: 285 -VSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338
Score = 37.0 bits (85), Expect = 0.018
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 12 LKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLL 71
+ + + + A ++ G+ +E+Y+ + G+ + S + + + G +
Sbjct: 264 IDNIVTLPELNNLSIIYQIKA---VSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKV 319
Query: 72 QRSDKKYDEAIKCYRNALK 90
EA Y A
Sbjct: 320 YEMKGMNREAADAYLTAFN 338
Score = 34.3 bits (78), Expect = 0.15
Identities = 24/208 (11%), Positives = 46/208 (22%), Gaps = 61/208 (29%)
Query: 46 EAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLL 105
+ LL DK + A + ++ + + +L+
Sbjct: 195 ALLTNFYQAH------------DYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALV 242
Query: 106 QIQMRDLEGYRETRY--------QLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFR 157
I E + + L S I A L
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK------------ 290
Query: 158 KTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLK 217
G +E+ + ++ + + G +
Sbjct: 291 ---------------------------GKTDESYQAINTGID-LEMSWLNYVLLGKVYEM 322
Query: 218 LGQYNEAMKHYESLIERN-QENTLYYNK 244
G EA Y + NTLY+ +
Sbjct: 323 KGMNREAADAYLTAFNLRPGANTLYWIE 350
Score = 31.6 bits (71), Expect = 0.85
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 358 YHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQS 417
Y L + Y+ G +A + A + P L+ + I++ V +LD+ +
Sbjct: 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQT--SVPYVVPYLDKFLA 370
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 37.4 bits (86), Expect = 0.013
Identities = 24/183 (13%), Positives = 49/183 (26%), Gaps = 17/183 (9%)
Query: 105 LQIQMRDLEGYRETR--YQLFMLRPTQRAS-WIGFAMAYHLLHDFDMACNILEAFRKTQQ 161
+QI M L Y T + +GFA ++ A LEA
Sbjct: 74 VQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS 133
Query: 162 VTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY--GALKLKLG 219
+ + + ++ + + + + + L G L
Sbjct: 134 -EHLVAWMKA-VVYGAA------ERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185
Query: 220 QYNEAMKHYESLIERNQEN----TLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPK 275
+ EA + + + + + + N LL + +P+ V
Sbjct: 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAA 245
Query: 276 RLS 278
L
Sbjct: 246 ALK 248
Score = 33.5 bits (76), Expect = 0.19
Identities = 13/115 (11%), Positives = 24/115 (20%), Gaps = 23/115 (20%)
Query: 472 CALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLT 531
A+ Y RW D + + + K+ G+
Sbjct: 141 KAVVYGAAERWTDVIDQVKSAGK-------------------WPDKFLAG-AAGVAHGVA 180
Query: 532 LNCLGRKEEAYEYVRRGLRNDLKSHV---CWHVYGLLQRSDKKYDEAIKCYRNAL 583
L EA + + + +RS A+
Sbjct: 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235
Score = 29.3 bits (65), Expect = 4.0
Identities = 7/64 (10%), Positives = 13/64 (20%), Gaps = 3/64 (4%)
Query: 29 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHV---CWHVYGLLQRSDKKYDEAIKCY 85
G+ L EA + + + +RS A+
Sbjct: 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL 231
Query: 86 RNAL 89
Sbjct: 232 EWLQ 235
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 34.7 bits (81), Expect = 0.024
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 14 FAKQILTNPKYAEHGETLAM--KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLL 71
+ K + +P AE A G G +EA EY ++ L D + W+ G
Sbjct: 32 YQKALELDPNNAE-----AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86
Query: 72 QRSDKKYDEAIKCYRNALK 90
YDEAI+ Y+ AL+
Sbjct: 87 YYKQGDYDEAIEYYQKALE 105
Score = 34.7 bits (81), Expect = 0.024
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 508 FAKQILTNPKYAEHGETLAM--KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLL 565
+ K + +P AE A G G +EA EY ++ L D + W+ G
Sbjct: 32 YQKALELDPNNAE-----AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86
Query: 566 QRSDKKYDEAIKCYRNALK 584
YDEAI+ Y+ AL+
Sbjct: 87 YYKQGDYDEAIEYYQKALE 105
Score = 32.8 bits (76), Expect = 0.10
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 90
G G +EA EY ++ L D + W+ G YDEAI+ Y+ AL+
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Score = 32.8 bits (76), Expect = 0.10
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 528 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
G G +EA EY ++ L D + W+ G YDEAI+ Y+ AL+
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Score = 27.4 bits (62), Expect = 9.1
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQEN 238
GD +EA+++ +++ + E + G K G Y+EA+++Y+ +E + N
Sbjct: 20 YKQGDYDEAIEY---YQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76
Query: 239 TLYYN 243
+
Sbjct: 77 AEAWY 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 36.5 bits (84), Expect = 0.025
Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 14/181 (7%)
Query: 68 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRP 127
K++EA A ++ + + ++
Sbjct: 23 KLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFL---KAADYQKKAGN-----ED 74
Query: 128 TQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDL 187
+++ + + A + LE + + + ++ D D
Sbjct: 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDY 134
Query: 188 EEAVKHLDR---FKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENTLY 241
+A+ + + Q + + LK GQY EA Y LI+ + N L
Sbjct: 135 AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194
Query: 242 Y 242
Sbjct: 195 Q 195
Score = 32.3 bits (73), Expect = 0.49
Identities = 28/216 (12%), Positives = 57/216 (26%), Gaps = 21/216 (9%)
Query: 6 KQYKNGLKFAKQILTN--PKYAEHGETLAMKGLTLNCLGRKEEAYEY------VRRGLRN 57
K+ F K + K+ E + A + ++ N
Sbjct: 13 KKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN 72
Query: 58 DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ----IQMRDLE 113
+ ++ + +S A+ NA++ Q R + I DL
Sbjct: 73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH 132
Query: 114 GYRE---------TRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTN 164
Y + Y +I A L + A +I K+
Sbjct: 133 DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192
Query: 165 SYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQ 200
+ + L + + + D A + L + +
Sbjct: 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 33.9 bits (79), Expect = 0.025
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 34 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 90
G G +EA EY ++ L D + W+ G YDEAI+ Y+ AL+
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Score = 33.9 bits (79), Expect = 0.025
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 528 KGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALK 584
G G +EA EY ++ L D + W+ G YDEAI+ Y+ AL+
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 33.8 bits (78), Expect = 0.033
Identities = 9/64 (14%), Positives = 24/64 (37%)
Query: 356 WVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEA 415
+ + LAQ + + +AL ++ P + + G++Y+ +A +
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67
Query: 416 QSLD 419
+
Sbjct: 68 IEVA 71
Score = 32.2 bits (74), Expect = 0.12
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 19 LTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKY 78
+ +P+ T A + D ++ G L +
Sbjct: 1 MEDPEDPF---TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRT 57
Query: 79 DEAIKCYRNALK 90
D+AI Y ++
Sbjct: 58 DDAIDTYAQGIE 69
Score = 32.2 bits (74), Expect = 0.12
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 3/72 (4%)
Query: 513 LTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKY 572
+ +P+ T A + D ++ G L +
Sbjct: 1 MEDPEDPF---TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRT 57
Query: 573 DEAIKCYRNALK 584
D+AI Y ++
Sbjct: 58 DDAIDTYAQGIE 69
Score = 29.5 bits (67), Expect = 1.1
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIE--RNQ 236
+ A+ F+E + TY G L +L + ++A+ Y IE R +
Sbjct: 18 LKHDNASRALAL---FEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74
Query: 237 ENTLYYNKLVEAKQ 250
++L +AK
Sbjct: 75 GTQKDLSELQDAKL 88
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 35.0 bits (80), Expect = 0.077
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 12/161 (7%)
Query: 457 MENLNEMQCMWFQTECALAYQRLGRWGDTLKKC--HEVDRKCYEH--KQYKNGLKFAKQI 512
+E + + + + + D K + E +QY+ + +
Sbjct: 153 VEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD 212
Query: 513 LTNPKYAEHGETLAMKGLTLNC--------LGRKEEAYEYVRRGLRNDLKSHVCWHVYGL 564
Y ++ + + L R +EA + L + K+ G
Sbjct: 213 FMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGK 272
Query: 565 LQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 605
+ + D A +R A K+ D+ I R+L L Q +
Sbjct: 273 AKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313
Score = 33.1 bits (75), Expect = 0.29
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 6 KQYKNGLKFAKQILTNPKYAEHGETLAMKGLTLNC--------LGRKEEAYEYVRRGLRN 57
+QY+ + + Y ++ + + L R +EA + L
Sbjct: 200 QQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259
Query: 58 DLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 111
+ K+ G + + D A +R A K+ D+ I R+L L Q +
Sbjct: 260 EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 33.0 bits (76), Expect = 0.12
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 212 GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQ 250
G L ++ EA+ +Y+ +E + +N Y + L A+
Sbjct: 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
Score = 31.8 bits (73), Expect = 0.25
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 69 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 111
GL S K+ EA+ Y+ AL+ + DN +L + ++++R+
Sbjct: 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129
Score = 31.8 bits (73), Expect = 0.25
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 563 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 605
GL S K+ EA+ Y+ AL+ + DN +L + ++++R+
Sbjct: 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129
Score = 29.5 bits (67), Expect = 1.5
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 215 KLKLGQYNEAMKHYESLIERNQENTLYYN 243
++K+ + A+ Y IE N N +Y+
Sbjct: 22 QMKVENFEAAVHFYGKAIELNPANAVYFC 50
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 33.7 bits (76), Expect = 0.21
Identities = 22/210 (10%), Positives = 55/210 (26%), Gaps = 5/210 (2%)
Query: 22 PKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEA 81
+ + MK R + Y+ + + Y + ++A
Sbjct: 176 ARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY---AEEVYFFYSEYLIGIGQKEKA 232
Query: 82 IKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYH 141
K ++ D + + L+ + + + S +
Sbjct: 233 KKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKE-LDLLRI 290
Query: 142 LLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQI 201
++ + LE FRK + + + +G +
Sbjct: 291 NHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350
Query: 202 HDKLTVEETYGALKLKLGQYNEAMKHYESL 231
D ++E + L++G A ++ L
Sbjct: 351 PDSTLLKEEFFLFLLRIGDEENARALFKRL 380
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase,
ATP-binding, microtubule INT and trafficking domain,
nucleotide-binding; HET: SRT; 2.40A {Sulfolobus
solfataricus} PDB: 2v6y_B*
Length = 83
Score = 31.2 bits (70), Expect = 0.23
Identities = 12/84 (14%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 538 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 597
++ A +Y ++ D + K ++AI Y+ A++ I + +
Sbjct: 8 EDMARKYAILAVKAD---------------KEGKVEDAITYYKKAIEVLSQIIVLYPESV 52
Query: 598 LLQIQMRDLEGYREGVSAMENLNE 621
+ + Y++ +S +E +
Sbjct: 53 ARTAYEQMINEYKKRISYLEKVLP 76
Score = 28.5 bits (63), Expect = 2.1
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 15/74 (20%)
Query: 44 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 103
++ A +Y ++ D + K ++AI Y+ A++ I + +
Sbjct: 8 EDMARKYAILAVKAD---------------KEGKVEDAITYYKKAIEVLSQIIVLYPESV 52
Query: 104 LLQIQMRDLEGYRE 117
+ + Y++
Sbjct: 53 ARTAYEQMINEYKK 66
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 33.1 bits (75), Expect = 0.38
Identities = 71/436 (16%), Positives = 138/436 (31%), Gaps = 85/436 (19%)
Query: 246 VEAKQLTNNDDIFQLLTHYISKYPKATV-PKRLSLNYVSGDQFRTEIDKYLRHGFHKGVP 304
+E + N + +F+ L+ Y+ + + L + ID+ ++ +
Sbjct: 928 LELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPL---IDQVVQTALSETQD 984
Query: 305 PLFVNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEGEVEPASALLWVYHYLAQH 364
P V S T K + DL +E L K L + + L
Sbjct: 985 PEEV------SVTVKAFMTADLPNELIELLEK---IVLDN-----SVFSEHRNLQNLLIL 1030
Query: 365 YDHLGDTMKALNYINAAIDHT-PTLIELFVTKGR------IYKHAGDVLEAYK-WLDEAQ 416
D + + YIN ++ P + + ++ I++ A + ++
Sbjct: 1031 TAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIG 1090
Query: 417 SLDTADRYIN--------SKCAKYMLRANLIKEA-------------EETCSKFTREG-- 453
+LD A + S+ AK L+ ++KEA E G
Sbjct: 1091 NLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNW 1150
Query: 454 ---VSAMENL-NEMQCMWFQTECALAYQRLGRWGD--------TLKKCHEVDRKCYEHKQ 501
V ++ + + + +TE A + R + +V +CY+ K
Sbjct: 1151 EELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM 1210
Query: 502 YKNGLKFAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHV 561
Y + + A TL LG + A + R+ VC+
Sbjct: 1211 YDAAKLLYNNVSNFGRLAS----------TLVHLGEYQAAVDGARKANSTRTWKEVCFAC 1260
Query: 562 YGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNE 621
K++ A C + + +L L +D + E ++ +E
Sbjct: 1261 VDG-----KEFRLAQMCGLHI-------VVHADELEELINYYQDRGYFEELITMLEAALG 1308
Query: 622 MQC--MWFQTECALAY 635
++ M TE A+ Y
Sbjct: 1309 LERAHMGMFTELAILY 1324
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 30.4 bits (69), Expect = 0.43
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQEN 238
+ GD+E A++ L+ F + + + +E Y G KLG + +A+ +Y+S IE N ++
Sbjct: 11 INQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68
Query: 239 --TLYYNKLVEAKQLTNNDDIFQLLTHY 264
+++ N D QL H+
Sbjct: 69 PALQARKMVMDILNFYNKDMYNQLEHHH 96
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 31.1 bits (71), Expect = 0.47
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 69 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 111
+ K Y +A+ Y+ AL + + + +
Sbjct: 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
Score = 31.1 bits (71), Expect = 0.47
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 563 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 605
+ K Y +A+ Y+ AL + + + +
Sbjct: 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
Score = 29.9 bits (68), Expect = 1.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 217 KLGQYNEAMKHYESLIERNQENTLYYN 243
+ G Y +AMKHY I+RN ++ Y+
Sbjct: 28 QKGDYPQAMKHYTEAIKRNPKDAKLYS 54
Score = 29.1 bits (66), Expect = 2.2
Identities = 5/39 (12%), Positives = 12/39 (30%)
Query: 212 GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQ 250
A + Y +AM Y+ ++ + +
Sbjct: 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function;
2.00A {Candida albicans} PDB: 2x7p_A
Length = 321
Score = 32.4 bits (73), Expect = 0.51
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 2/101 (1%)
Query: 360 YLAQHYDHLGDTMKALN-YINAAIDHTPTLIELFVTKGRIYKH-AGDVLEAYKWLDEAQS 417
L D + + + A+N I +H IE + A + + ++
Sbjct: 211 SLQAKSDVIKNFIDAVNQGIQYYNEHVDEAIEYISSNLDYSAEDAKEWTKTVEFNSRIGK 270
Query: 418 LDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAME 458
I K + A ++ E+++ K V
Sbjct: 271 TPLDWDTIVVKTKDTLKLAGVLAESDDVILKRLNSNVKKTN 311
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 32.5 bits (73), Expect = 0.54
Identities = 52/405 (12%), Positives = 122/405 (30%), Gaps = 15/405 (3%)
Query: 228 YESLIERNQENTLYYNKLVEAKQLTNNDDIFQLLTHYISKYPKATVPKRLSLNYVSGDQF 287
E +E N + ++ L+ Q D + ++++P + R Y+ +
Sbjct: 2 AEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSG---RFWKLYIEAEIK 58
Query: 288 RTEIDKYLRHGFHKGVPPLF-VNLRSLYSNTEKCKIIQDLVESYVEALSKTGHFSLQDEG 346
DK + F + + + ++L Y + + + + SY E +++ F+L G
Sbjct: 59 AKNYDK-VEKLFQRCLMKVLHIDLWKCYLSY--VRETKGKLPSYKEKMAQAYDFALDKIG 115
Query: 347 EVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVL 406
+ + Y + + +G + + + + ++++
Sbjct: 116 MEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYE 175
Query: 407 EAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQCM 466
E + ++ R + ++K + + +M
Sbjct: 176 EGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235
Query: 467 WFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLA 526
+ Q E + + + YE G + + LA
Sbjct: 236 YIQWE-----KSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 290
Query: 527 MKGLTLNCLGRKEEAYEYVRRGLRNDLK-SHVCWHVYGLLQRSDKKYDEAIKCYRNALKW 585
KG N +EA R + LK + + + Y + S KY++ Y L
Sbjct: 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350
Query: 586 E-HDNIQIMRDLSLLQIQMRDLEGYREGVS-AMENLNEMQCMWFQ 628
E D + + ++ R A E+ ++
Sbjct: 351 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 32.2 bits (73), Expect = 0.66
Identities = 12/71 (16%), Positives = 25/71 (35%)
Query: 41 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 100
L A E + L D + G + ++ A ++ L+ +N
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268
Query: 101 DLSLLQIQMRD 111
L++ Q ++R
Sbjct: 269 QLAVCQQRIRR 279
Score = 32.2 bits (73), Expect = 0.66
Identities = 12/71 (16%), Positives = 25/71 (35%)
Query: 535 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 594
L A E + L D + G + ++ A ++ L+ +N
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268
Query: 595 DLSLLQIQMRD 605
L++ Q ++R
Sbjct: 269 QLAVCQQRIRR 279
Score = 29.5 bits (66), Expect = 3.8
Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 20/82 (24%)
Query: 570 KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQT 629
KY +A+ Y+ + W + + S + + + R +++ NL
Sbjct: 161 GKYKQALLQYKKIVSW------LEYESSFSNEEAQKAQALR--LASHLNL---------- 202
Query: 630 ECALAYQRLGRWGDTLKKCHEV 651
A+ + +L + ++ C++
Sbjct: 203 --AMCHLKLQAFSAAIESCNKA 222
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 30.4 bits (69), Expect = 0.72
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 217 KLGQYNEAMKHYESLIERNQENTLYYN 243
K G Y EA+ Y+ LI +N + Y+
Sbjct: 16 KQGLYREAVHCYDQLITAQPQNPVGYS 42
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 32.1 bits (73), Expect = 0.74
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 153 LEAFRKTQQVTNSYDFEHS-ELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEETY 211
L A R + DF S EL L + + D GD+ +A + LD E++ + +
Sbjct: 414 LRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYR 473
Query: 212 GALKLKLGQYNEAMKHYESL 231
+L G Y+ A KH+ +
Sbjct: 474 AVAELLTGDYDSATKHFTEV 493
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 30.8 bits (70), Expect = 0.77
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 17/83 (20%)
Query: 569 DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQ 628
K Y EAI YR+AL I + +++ + N+
Sbjct: 24 QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN-----IPLYANM--------- 69
Query: 629 TECALAYQRLGRWGDTLKKCHEV 651
+ Y +G + + EV
Sbjct: 70 ---SQCYLNIGDLHEAEETSSEV 89
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 30.6 bits (68), Expect = 0.86
Identities = 16/159 (10%), Positives = 38/159 (23%), Gaps = 27/159 (16%)
Query: 456 AMENLNEMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTN 515
M+ L E+ + A G + + + ++ + +
Sbjct: 1 GMKPLKEVVGAYLALSDAQRQLVAGEYDEAAAN-------------CRRAMEISHTMPPE 47
Query: 516 PKYAEHGETL---AMKGLTLNCLGRKEEAYEYVRRGLRNDLKS-------HVCWHVY--- 562
+ G A L L +EA + L + W
Sbjct: 48 EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYS 107
Query: 563 -GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 600
L + EA+ ++ ++ + +
Sbjct: 108 RALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146
Score = 30.6 bits (68), Expect = 0.97
Identities = 11/115 (9%), Positives = 28/115 (24%), Gaps = 14/115 (12%)
Query: 6 KQYKNGLKFAKQILTNPKYAEHGETL---AMKGLTLNCLGRKEEAYEYVRRGLRNDLKS- 61
+ ++ + + + G A L L +EA + L +
Sbjct: 32 ANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91
Query: 62 ------HVCWHVY----GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 106
W L + EA+ ++ ++ + +
Sbjct: 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 29.8 bits (68), Expect = 1.1
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 76 KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 108
+++EA + Y LK E +N Q+ L ++ +
Sbjct: 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118
Score = 29.8 bits (68), Expect = 1.1
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 570 KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQ 602
+++EA + Y LK E +N Q+ L ++ +
Sbjct: 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118
Score = 28.3 bits (64), Expect = 3.7
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 212 GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQ 250
A L ++ EA + YE ++ N L +
Sbjct: 79 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117
Score = 27.5 bits (62), Expect = 7.0
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 216 LKLGQYNEAMKHYESLIERNQENTLYYN 243
L +G ++A++ Y I+ + N + Y+
Sbjct: 15 LSVGNIDDALQCYSEAIKLDPHNHVLYS 42
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex,
nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis,
ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Length = 83
Score = 28.9 bits (64), Expect = 1.2
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 538 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 597
+E A +Y ++ D + +EAI Y+ A++ + + RD S
Sbjct: 16 EEMARKYAINAVKAD---------------KEGNAEEAITNYKKAIEVLAQLVSLYRDGS 60
Query: 598 LLQIQMRDLEGYREGVSAMENL 619
I + + Y+ + ++ L
Sbjct: 61 TAAIYEQMINEYKRRIEVLKEL 82
Score = 26.9 bits (59), Expect = 6.8
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 15/74 (20%)
Query: 44 KEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLS 103
+E A +Y ++ D + +EAI Y+ A++ + + RD S
Sbjct: 16 EEMARKYAINAVKAD---------------KEGNAEEAITNYKKAIEVLAQLVSLYRDGS 60
Query: 104 LLQIQMRDLEGYRE 117
I + + Y+
Sbjct: 61 TAAIYEQMINEYKR 74
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 31.4 bits (70), Expect = 1.2
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 354 LLWVYHYLAQHYDHLGDTMKALNYINAAIDHT--------PTLIELFVTKGRIYKHAGDV 405
+L + + ++ D AL Y I + +++ GR+Y +
Sbjct: 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENK 398
Query: 406 LEAYKWLDEAQSL 418
K L +A ++
Sbjct: 399 AAGEKALKKAIAI 411
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 31.2 bits (70), Expect = 1.2
Identities = 20/157 (12%), Positives = 43/157 (27%), Gaps = 13/157 (8%)
Query: 462 EMQCMWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKF---AKQILTNPKY 518
E+ F+ + E ++ +Y + L
Sbjct: 244 EVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG 303
Query: 519 AEHGETLAMKGLTLNC----------LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRS 568
E+ A + L L +A E + L D + + G Q
Sbjct: 304 LSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363
Query: 569 DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 605
+++ A + L+ N +S+ Q + ++
Sbjct: 364 MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 29.9 bits (68), Expect = 1.3
Identities = 12/114 (10%), Positives = 38/114 (33%), Gaps = 12/114 (10%)
Query: 1 KCYEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDL 59
Y+ K ++ + K I +P K + E ++ + +
Sbjct: 17 AAYKQKDFEKAHVHYDKAIELDPSNIT---FYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Query: 60 KSHVCWHVY-------GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 106
++ + + G + A++ + +L E + ++++ + L+
Sbjct: 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS-EFRDPELVKKVKELE 126
Score = 29.9 bits (68), Expect = 1.3
Identities = 12/114 (10%), Positives = 38/114 (33%), Gaps = 12/114 (10%)
Query: 495 KCYEHKQYKNGLK-FAKQILTNPKYAEHGETLAMKGLTLNCLGRKEEAYEYVRRGLRNDL 553
Y+ K ++ + K I +P K + E ++ + +
Sbjct: 17 AAYKQKDFEKAHVHYDKAIELDPSNIT---FYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Query: 554 KSHVCWHVY-------GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQ 600
++ + + G + A++ + +L E + ++++ + L+
Sbjct: 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS-EFRDPELVKKVKELE 126
Score = 29.2 bits (66), Expect = 1.8
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 183 DSGDLEEAVKHLDRFKEQIHDKLTVEETY---GALKLKLGQYNEAMKHYESLIERNQENT 239
D E+A H + + I + Y A+ + ++ E ++ E +E +E
Sbjct: 20 KQKDFEKAHVH---YDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76
Query: 240 LYYNKLVEA 248
Y + +A
Sbjct: 77 ADYKLIAKA 85
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 30.6 bits (68), Expect = 1.7
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 354 LLWVYHYLAQHYDHLGDTMKALNYINAAIDHT--------PTLIELFVTKGRIYKHAGDV 405
L V +LG +AL Y ++ P + G++ H G
Sbjct: 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMF 387
Query: 406 LEAYKWLDEAQ 416
+A K L A
Sbjct: 388 PQAMKNLRLAF 398
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 29.1 bits (66), Expect = 2.1
Identities = 5/39 (12%), Positives = 17/39 (43%)
Query: 212 GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQ 250
A + + ++++A + YE ++ + N + +
Sbjct: 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
Score = 29.1 bits (66), Expect = 2.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 217 KLGQYNEAMKHYESLIERNQENTLYYN 243
K G Y AM+HY ++R+ EN + Y+
Sbjct: 25 KKGDYPTAMRHYNEAVKRDPENAILYS 51
Score = 28.7 bits (65), Expect = 2.8
Identities = 5/34 (14%), Positives = 16/34 (47%)
Query: 69 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 102
+ +++ +A + Y +AL+ + N + +
Sbjct: 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
Score = 28.7 bits (65), Expect = 2.8
Identities = 5/34 (14%), Positives = 16/34 (47%)
Query: 563 GLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDL 596
+ +++ +A + Y +AL+ + N + +
Sbjct: 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 29.2 bits (66), Expect = 2.3
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 215 KLKLGQYNEAMKHYESLIERNQENTLYYN 243
+ A+K Y +I+R E+ Y+
Sbjct: 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYS 42
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 29.9 bits (67), Expect = 2.9
Identities = 16/91 (17%), Positives = 25/91 (27%)
Query: 362 AQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLDTA 421
A Y + +AL A++ ++ G+ EA L A SL
Sbjct: 45 ALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104
Query: 422 DRYINSKCAKYMLRANLIKEAEETCSKFTRE 452
R LR K + +
Sbjct: 105 QRLNFGDDIPSALRIAKKKRWNSIEERRIHQ 135
Score = 28.7 bits (64), Expect = 6.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 217 KLGQYNEAMKHYESLIERNQENTLYY 242
+Y EA Y I RN +YY
Sbjct: 16 VGRKYPEAAACYGRAITRNPLVAVYY 41
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 28.8 bits (65), Expect = 3.2
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 217 KLGQYNEAMKHYESLIERNQENTLYYN 243
K ++ A+KHY+ E + N Y
Sbjct: 16 KKKDFDTALKHYDKAKELDPTNMTYIT 42
Score = 28.4 bits (64), Expect = 3.4
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 41 LGRKEEAYEYVRRGLRNDLKSHVCWHVY-------GLLQRSDKKYDEAIKCYRNALKWEH 93
G + E + + ++ + G ++KY +AI Y +L EH
Sbjct: 51 KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA-EH 109
Query: 94 DNIQIMRDLSLLQIQMRDLE 113
+++ + +++ E
Sbjct: 110 RTPDVLKKCQQAEKILKEQE 129
Score = 28.4 bits (64), Expect = 3.4
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 535 LGRKEEAYEYVRRGLRNDLKSHVCWHVY-------GLLQRSDKKYDEAIKCYRNALKWEH 587
G + E + + ++ + G ++KY +AI Y +L EH
Sbjct: 51 KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA-EH 109
Query: 588 DNIQIMRDLSLLQIQMRDLE 607
+++ + +++ E
Sbjct: 110 RTPDVLKKCQQAEKILKEQE 129
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 29.6 bits (66), Expect = 3.3
Identities = 29/216 (13%), Positives = 61/216 (28%), Gaps = 7/216 (3%)
Query: 406 LEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEMQC 465
EA ++L+++ L +N+ AN+ + A T K A + E +
Sbjct: 54 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113
Query: 466 MWFQTECALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQIL---TNPKYAEHG 522
+ + Y RL D + + + G+K + I H
Sbjct: 114 KY--EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA--EGIKSGRMIFKKAREDARTRHH 169
Query: 523 ETLAMKGLTLNCLGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNA 582
+ + C K A++ GL+ Y + + +
Sbjct: 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229
Query: 583 LKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMEN 618
L + ++ + G + +E
Sbjct: 230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 29.4 bits (66), Expect = 3.4
Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 7/113 (6%)
Query: 6 KQYKNGLKFAKQILTNPKYAEHGETLAMK-GLTLN---C---LGRKEEAYEYVRRGLRND 58
+YK L F + ++ LN C +A ++ + L+ D
Sbjct: 59 VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118
Query: 59 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 111
+ + G+ +EA + A +N+ I L ++++
Sbjct: 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171
Score = 29.4 bits (66), Expect = 3.4
Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 7/113 (6%)
Query: 500 KQYKNGLKFAKQILTNPKYAEHGETLAMK-GLTLN---C---LGRKEEAYEYVRRGLRND 552
+YK L F + ++ LN C +A ++ + L+ D
Sbjct: 59 VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118
Query: 553 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRD 605
+ + G+ +EA + A +N+ I L ++++
Sbjct: 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171
Score = 28.6 bits (64), Expect = 6.3
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 19/83 (22%)
Query: 569 DKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYREGVSAMENLNEMQCMWFQ 628
+ +EAI Y+ AL + + + L + + ++ LN
Sbjct: 51 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN---------LNL------- 94
Query: 629 TECALAYQRLGRWGDTLKKCHEV 651
A Y + + + +V
Sbjct: 95 ---ATCYNKNKDYPKAIDHASKV 114
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 28.4 bits (64), Expect = 3.6
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 217 KLGQYNEAMKHYESLIERNQENTLYYN 243
+Y EA Y I RN +YY
Sbjct: 21 VGRKYPEAAACYGRAITRNPLVAVYYT 47
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 177
Score = 28.9 bits (64), Expect = 3.6
Identities = 15/159 (9%), Positives = 40/159 (25%), Gaps = 21/159 (13%)
Query: 41 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 100
G + A + + L + W + A Y+ ++
Sbjct: 18 YGNLDAALDEAK-----KLNDSITWERLIQEALAQGNASLAEMIYQTQHSFD-------- 64
Query: 101 DLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQ 160
LS L + D+ + R + + + +I +
Sbjct: 65 KLSFLYLVTGDVNKLSK-----MQNIAQTREDFGSMLLNTFYNNSTKERSSIFA---EGG 116
Query: 161 QVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKE 199
+ +Y + + + +++E L +
Sbjct: 117 SLPLAYAVAKANGDEAAASAFLEQAEVDEQDVTLPDQMD 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 29.4 bits (65), Expect = 4.5
Identities = 21/191 (10%), Positives = 61/191 (31%), Gaps = 20/191 (10%)
Query: 59 LKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLEGYRET 118
L+ + L+ ++ + K + + + L+ + E +
Sbjct: 56 LQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFL 115
Query: 119 RYQLFMLRPTQRASWIGFAMAYHLLHDFDMACNILEAFRKTQQVTNSYDFEHSELLLYQS 178
++Q ++ A D++ L+ QQ+T +++ + +
Sbjct: 116 QWQYYV------------AAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIENAIA 162
Query: 179 MVIQDSGDLEEAVKHLDRFKEQIHDKLTVEET-------YGALKLKLGQYNEAMKHYESL 231
+ ++G L++ + ++ +Q+ EE + +Y E++
Sbjct: 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222
Query: 232 IERNQENTLYY 242
IE +
Sbjct: 223 IEISCRINSMA 233
>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga
maritima} SCOP: a.8.3.3 c.6.2.4
Length = 528
Score = 29.4 bits (65), Expect = 4.8
Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 2/135 (1%)
Query: 339 HFSLQDEGEVEPASALLWVYHYLAQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRI 398
H E + W++ + + Y L + + TP L+E+ ++
Sbjct: 12 HLPYVHHPEYDHFLEERWLFEAITETYIPLLMMFDEIEDFRLTMSITPPLMEMLSSRDLQ 71
Query: 399 YKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAME 458
K+ + + + ++ + + K AK+ ++ + + +
Sbjct: 72 EKYERHMEKLIELANKEVERTKKEHPLKHKMAKFYREH--FEKILNVFRSYDGNILEGFK 129
Query: 459 NLNEMQCMWFQTECA 473
E + T A
Sbjct: 130 KYQETGKLEIVTCNA 144
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 29.3 bits (66), Expect = 5.5
Identities = 11/100 (11%), Positives = 32/100 (32%)
Query: 151 NILEAFRKTQQVTNSYDFEHSELLLYQSMVIQDSGDLEEAVKHLDRFKEQIHDKLTVEET 210
++ + ++ + E S + Y+ + +E+ K + +T
Sbjct: 153 DVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKT 212
Query: 211 YGALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQ 250
Y + L++ Y+ R + +L ++
Sbjct: 213 YKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEK 252
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 28.5 bits (64), Expect = 5.5
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 217 KLGQYNEAMKHYESLIERNQENTLYYN 243
+Y++A+ Y + N +Y +
Sbjct: 23 ARKEYSKAIDLYTQALSIAPANPIYLS 49
Score = 28.2 bits (63), Expect = 6.4
Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 2/104 (1%)
Query: 362 AQHYDHLGDTMKALNYINAAIDHTPTLIELFVTKGRIYKHAGDVLEAYKWLDEAQSLD-- 419
A Y G KA A P + + G D A + ++ +
Sbjct: 52 AAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
Query: 420 TADRYINSKCAKYMLRANLIKEAEETCSKFTREGVSAMENLNEM 463
+ + E + + A M
Sbjct: 112 GGSDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGASRGAGGM 155
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.7.14.1
Length = 117
Score = 27.7 bits (61), Expect = 5.6
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 397 RIYKHAGDVLEAYKWLDEAQSLDTADRYINSKCAKYMLRANLIKE 441
++Y+HA + D A + I +KC +Y+ RA +KE
Sbjct: 39 QLYQHAVQYFLHV--VKYEAQGDKAKQSIRAKCTEYLDRAEKLKE 81
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 28.1 bits (63), Expect = 6.1
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 212 GALKLKLGQYNEAMKHYESLIERNQENTLYYNKLVEAKQL 251
A + LG++ A++ YE++++ + K E ++
Sbjct: 88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127
Score = 28.1 bits (63), Expect = 6.2
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 182 QDSGDLEEAVKHLDRFKEQIHDKLTVEETYGALKLKLGQYNEAMKHYESLIERNQENTLY 241
+D + A+K + K Q K Y A+K Y IE N N +Y
Sbjct: 1 RDEPPADGALKRAEELKTQ-----------ANDYFKAKDYENAIKFYSQAIELNPSNAIY 49
Query: 242 YN 243
Y
Sbjct: 50 YG 51
Score = 28.1 bits (63), Expect = 7.8
Identities = 4/38 (10%), Positives = 12/38 (31%)
Query: 76 KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 113
K+ A++ Y +K + + ++
Sbjct: 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132
Score = 28.1 bits (63), Expect = 7.8
Identities = 4/38 (10%), Positives = 12/38 (31%)
Query: 570 KKYDEAIKCYRNALKWEHDNIQIMRDLSLLQIQMRDLE 607
K+ A++ Y +K + + ++
Sbjct: 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 28.9 bits (65), Expect = 8.0
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 20/116 (17%)
Query: 41 LGRKEEAYEYVRRGLRNDLKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKWEHDNIQIMR 100
+G+ A + + D + + W G + AI+ + NA E
Sbjct: 665 VGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLE-------- 711
Query: 101 DLSLLQIQMRDLEGYRETRYQLFMLRPTQRASWIGFA-MAYHLLHDFDMACNILEA 155
L LL + EG + + + A AY + D A ++L
Sbjct: 712 SLFLLHSSFNNKEGLVT------LAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIK 761
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 28.3 bits (64), Expect = 8.8
Identities = 15/118 (12%), Positives = 28/118 (23%), Gaps = 19/118 (16%)
Query: 473 ALAYQRLGRWGDTLKKCHEVDRKCYEHKQYKNGLKFAKQILTNPKYAEHGETLAMKGLTL 532
A Y + G++ D E+ L A + ++
Sbjct: 176 ASCYLKQGKYQDAETLYKEI-------------LTRAHEKEFGSVNGDNKPIWMHAEERE 222
Query: 533 NCLGRKEEAYEYVRRGLRNDL--KSH----VCWHVYGLLQRSDKKYDEAIKCYRNALK 584
++ ++ Y G G L R K + A A +
Sbjct: 223 ESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.414
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,182,553
Number of extensions: 680437
Number of successful extensions: 3300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2258
Number of HSP's successfully gapped: 652
Length of query: 724
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 623
Effective length of database: 3,881,772
Effective search space: 2418343956
Effective search space used: 2418343956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)