BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6604
(85 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E1D|A Chain A, Crystal Structure Of Mouse Transaldolase
pdb|2E1D|B Chain B, Crystal Structure Of Mouse Transaldolase
Length = 331
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 29 KLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
+LK +T VVADTGDF A+ +YKP DATTNPSLIL AA MP YQ L+ +A+ +GK+ G
Sbjct: 14 QLKQFTTVVADTGDFNAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAIAYGKKLG 70
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDASLKL-KDYTVVVA 38
+DKL +LFG EIL IPGRVSTEVDA L KD V A
Sbjct: 81 IDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARA 119
>pdb|1F05|A Chain A, Crystal Structure Of Human Transaldolase
pdb|1F05|B Chain B, Crystal Structure Of Human Transaldolase
Length = 337
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
Query: 19 RVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAV 78
R+ + +D +LK +T VVADTGDF A+ +YKP DATTNPSLIL AA MP YQ L+ +A+
Sbjct: 10 RMESALD---QLKQFTTVVADTGDFHAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAI 66
Query: 79 EFGKQNG 85
+G++ G
Sbjct: 67 AYGRKLG 73
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDASLKL-KDYTVVVA 38
+DKL +LFG EIL IPGRVSTEVDA L KD V A
Sbjct: 84 IDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARA 122
>pdb|2CWN|A Chain A, Crystal Structure Of Mouse Transaldolase
pdb|2CWN|B Chain B, Crystal Structure Of Mouse Transaldolase
Length = 332
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 45/57 (78%)
Query: 29 KLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
+LK +T VVADTGDF A+ +YKP DATTNPSLIL AA MP YQ L+ +A+ +GK+ G
Sbjct: 12 QLKQFTTVVADTGDFNAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAIAYGKKLG 68
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDASLKL-KDYTVVVA 38
+DKL +LFG EIL IPGRVSTEVDA L KD V A
Sbjct: 79 IDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARA 117
>pdb|3CWN|A Chain A, Escherichia Coli Transaldolase B Mutant F178y
pdb|3CWN|B Chain B, Escherichia Coli Transaldolase B Mutant F178y
Length = 337
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 15 IIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLI 74
++P R S D L+ YT VVADTGD AMK Y+P DATTNPSLIL AA +P+Y+ LI
Sbjct: 14 LVP-RGSHMTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLI 72
Query: 75 NKAVEFGKQN 84
+ AV + KQ
Sbjct: 73 DDAVAWAKQQ 82
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASL 28
DKL + G EIL ++PGR+STEVDA L
Sbjct: 95 DKLAVNIGLEILKLVPGRISTEVDARL 121
>pdb|3KOF|A Chain A, Crystal Structure Of The Double Mutant F178yR181E OF
E.COLI Transaldolase B
pdb|3KOF|B Chain B, Crystal Structure Of The Double Mutant F178yR181E OF
E.COLI Transaldolase B
Length = 337
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 15 IIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLI 74
++P R S D L+ YT VVADTGD AMK Y+P DATTNPSLIL AA +P+Y+ LI
Sbjct: 14 LVP-RGSHMTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLI 72
Query: 75 NKAVEFGKQN 84
+ AV + KQ
Sbjct: 73 DDAVAWAKQQ 82
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASL 28
DKL + G EIL ++PGR+STEVDA L
Sbjct: 95 DKLAVNIGLEILKLVPGRISTEVDARL 121
>pdb|1I2Q|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
pdb|1I2Q|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant T156a
Length = 316
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84
L+ YT VVADTGD AMK Y+P DATTNPSLIL AA +P+Y+ LI+ AV + KQ
Sbjct: 7 LRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQ 61
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASL 28
DKL + G EIL ++PGR+STEVDA L
Sbjct: 74 DKLAVNIGLEILKLVPGRISTEVDARL 100
>pdb|1UCW|A Chain A, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
pdb|1UCW|B Chain B, Complex Of Transaldolase With The Reduced Schiff-Base
Intermediate
Length = 317
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84
L+ YT VVADTGD AMK Y+P DATTNPSLIL AA +P+Y+ LI+ AV + KQ
Sbjct: 8 LRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQ 62
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASL 28
DKL + G EIL ++PGR+STEVDA L
Sbjct: 75 DKLAVNIGLEILKLVPGRISTEVDARL 101
>pdb|1I2O|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
pdb|1I2O|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant E96a
Length = 316
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84
L+ YT VVADTGD AMK Y+P DATTNPSLIL AA +P+Y+ LI+ AV + KQ
Sbjct: 7 LRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQ 61
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASL 28
DKL + G EIL ++PGR+ST VDA L
Sbjct: 74 DKLAVNIGLEILKLVPGRISTAVDARL 100
>pdb|1I2R|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant S176a
pdb|1I2R|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant S176a
Length = 316
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84
L+ YT VVADTGD AMK Y+P DATTNPSLIL AA +P+Y+ LI+ AV + KQ
Sbjct: 7 LRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQ 61
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASL 28
DKL + G EIL ++PGR+STEVDA L
Sbjct: 74 DKLAVNIGLEILKLVPGRISTEVDARL 100
>pdb|1ONR|A Chain A, Structure Of Transaldolase B
pdb|1ONR|B Chain B, Structure Of Transaldolase B
Length = 316
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84
L+ YT VVADTGD AMK Y+P DATTNPSLIL AA +P+Y+ LI+ AV + KQ
Sbjct: 7 LRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQ 61
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASL 28
DKL + G EIL ++PGR+STEVDA L
Sbjct: 74 DKLAVNIGLEILKLVPGRISTEVDARL 100
>pdb|1I2N|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
pdb|1I2N|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant N35a
Length = 316
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 41/55 (74%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84
L+ YT VVADTGD AMK Y+P DATT PSLIL AA +P+Y+ LI+ AV + KQ
Sbjct: 7 LRQYTTVVADTGDIAAMKLYQPQDATTAPSLILNAAQIPEYRKLIDDAVAWAKQQ 61
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASL 28
DKL + G EIL ++PGR+STEVDA L
Sbjct: 74 DKLAVNIGLEILKLVPGRISTEVDARL 100
>pdb|1I2P|A Chain A, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
pdb|1I2P|B Chain B, Crystal Structure Of Escherichia Coli Transaldolase B
Mutant D17a
Length = 316
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 41/55 (74%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84
L+ YT VVA TGD AMK Y+P DATTNPSLIL AA +P+Y+ LI+ AV + KQ
Sbjct: 7 LRQYTTVVAATGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQ 61
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASL 28
DKL + G EIL ++PGR+STEVDA L
Sbjct: 74 DKLAVNIGLEILKLVPGRISTEVDARL 100
>pdb|3M16|A Chain A, Structure Of A Transaldolase From Oleispira Antarctica
Length = 329
Score = 72.8 bits (177), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/54 (62%), Positives = 43/54 (79%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQ 83
LK T VVADTGD EA+K++KP DATTNPSLIL+AA + YQHLI +A+++ Q
Sbjct: 13 LKAXTTVVADTGDIEAIKQFKPVDATTNPSLILKAAKLANYQHLIEEAIDWALQ 66
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVV 36
DKL + G E+L IPG +STEVDA L V
Sbjct: 83 DKLAVNIGCEVLTSIPGVISTEVDARLSFDTQATV 117
>pdb|3CQ0|A Chain A, Crystal Structure Of Tal2_yeast
pdb|3CQ0|B Chain B, Crystal Structure Of Tal2_yeast
Length = 339
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 42/52 (80%)
Query: 34 TVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
T VVAD+GDFEA+ KY+P D+TTNPSLIL A+ + +Y I+ AVE+G+++G
Sbjct: 24 THVVADSGDFEAISKYEPQDSTTNPSLILAASKLEKYARFIDAAVEYGRKHG 75
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDASLKL 30
MDK+++ FGT+IL ++PGRVSTEVDA L
Sbjct: 86 MDKILVEFGTQILKVVPGRVSTEVDARLSF 115
>pdb|3TK7|A Chain A, 2.0 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis In
Covalent Complex With Fructose 6- Phosphate
pdb|3TK7|B Chain B, 2.0 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis In
Covalent Complex With Fructose 6- Phosphate
pdb|3TNO|A Chain A, 1.65 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis In
Covalent Complex With Sedoheptulose-7- Phosphate
pdb|3TNO|B Chain B, 1.65 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis In
Covalent Complex With Sedoheptulose-7- Phosphate
pdb|3UPB|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of
Transaldolase From Francisella Tularensis In Covalent
Complex With Arabinose-5-Phosphate
pdb|3UPB|B Chain B, 1.5 Angstrom Resolution Crystal Structure Of
Transaldolase From Francisella Tularensis In Covalent
Complex With Arabinose-5-Phosphate
pdb|4E0C|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Transaldolase From Francisella Tularensis
(Phosphate-Free)
pdb|4E0C|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Transaldolase From Francisella Tularensis
(Phosphate-Free)
Length = 345
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%)
Query: 29 KLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
+LK T+VVADTGDFE +KKYKP DATTNPSLIL+A +Y +L+ + + K N
Sbjct: 32 QLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKANN 88
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 3 KLVILFGTEILNIIPGRVSTEVDASLKLKDYTVV 36
++++ FG +IL++I G+VS+EVDA + T +
Sbjct: 103 EILVSFGIKILDVIEGKVSSEVDARVSFNSATTI 136
>pdb|3TE9|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of K135m
Mutant Of Transaldolase B (Tala) From Francisella
Tularensis In Complex With Fructose 6-Phosphate
pdb|3TE9|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of K135m
Mutant Of Transaldolase B (Tala) From Francisella
Tularensis In Complex With Fructose 6-Phosphate
pdb|3TKF|A Chain A, 1.5 Angstrom Resolution Crystal Structure Of K135m
Mutant Of Transaldolase B (Tala) From Francisella
Tularensis In Complex With Sedoheptulose 7-Phosphate.
pdb|3TKF|B Chain B, 1.5 Angstrom Resolution Crystal Structure Of K135m
Mutant Of Transaldolase B (Tala) From Francisella
Tularensis In Complex With Sedoheptulose 7-Phosphate
Length = 345
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 41/57 (71%)
Query: 29 KLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
+LK T+VVADTGDFE +KKYKP DATTNPSLIL+A +Y +L+ + + K N
Sbjct: 32 QLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKANN 88
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 3 KLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDF--EAMKKYKPTDATTNPSL 60
++++ FG +IL++I G+VS+EVDA + T + D+ + +Y+ + L
Sbjct: 103 EILVSFGIKILDVIEGKVSSEVDARVSFNSATTI-----DYAKRIIARYESNGIPKDRVL 157
Query: 61 ILQAATM 67
I+ AAT
Sbjct: 158 IMIAATW 164
>pdb|3HJZ|A Chain A, The Structure Of An Aldolase From Prochlorococcus
Marinus
Length = 334
Score = 66.6 bits (161), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/51 (62%), Positives = 40/51 (78%)
Query: 29 KLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVE 79
+L TVVVADTGD +++KK++P DATTNPSLIL AA P Y LI+KA+E
Sbjct: 8 QLSSXTVVVADTGDLDSIKKFQPRDATTNPSLILAAAKNPDYVKLIDKAIE 58
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDASLKL 30
+D++ + FG EIL II GRVSTEVDA L
Sbjct: 78 VDQVSVFFGKEILKIISGRVSTEVDARLSF 107
>pdb|3IGX|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis.
pdb|3IGX|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of
Transaldolase B (Tala) From Francisella Tularensis
Length = 324
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 40/57 (70%)
Query: 29 KLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
+LK T VVADTGDFE +KKYKP DATTNPSLIL+A +Y +L+ + + K N
Sbjct: 11 QLKQVTXVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKANN 67
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 3 KLVILFGTEILNIIPGRVSTEVDASLKLKDYTVV 36
++++ FG +IL++I G+VS+EVDA + T +
Sbjct: 82 EILVSFGIKILDVIEGKVSSEVDARVSFNSATTI 115
>pdb|3NUA|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Clostridium Perfringens
pdb|3NUA|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Clostridium Perfringens
Length = 238
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
+ DY V FE + K A N IL+ A Q +LI+ +EFG+ NG
Sbjct: 136 INDYHAVGIGATTFEELNKIYEITAKVNE--ILKEAFKKQNINLIDFKLEFGRYNG 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,410,351
Number of Sequences: 62578
Number of extensions: 81636
Number of successful extensions: 213
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 39
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)