Query psy6604
Match_columns 85
No_of_seqs 106 out of 486
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 22:23:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00411 transaldolase-like pr 99.9 1.8E-22 3.9E-27 158.1 5.9 62 23-84 1-62 (333)
2 PRK12346 transaldolase A; Prov 99.8 6.8E-21 1.5E-25 148.5 5.8 62 24-85 1-62 (316)
3 TIGR00874 talAB transaldolase. 99.8 8.5E-20 1.8E-24 142.4 5.8 60 25-84 1-60 (317)
4 PRK12309 transaldolase/EF-hand 99.8 3.4E-19 7.3E-24 141.7 5.6 61 24-84 3-63 (391)
5 PRK05269 transaldolase B; Prov 99.7 2.1E-18 4.6E-23 134.2 4.9 61 23-83 1-61 (318)
6 cd00957 Transaldolase_TalAB Tr 99.7 2.8E-18 6.1E-23 133.5 5.4 60 25-84 1-60 (313)
7 KOG2772|consensus 99.7 8.9E-18 1.9E-22 132.0 4.7 62 24-85 13-75 (337)
8 KOG2772|consensus 99.6 4.2E-17 9.2E-22 128.2 -0.3 70 1-73 86-155 (337)
9 PTZ00411 transaldolase-like pr 99.0 9.6E-11 2.1E-15 92.2 -0.3 70 1-73 84-153 (333)
10 PRK12346 transaldolase A; Prov 98.9 1.4E-10 3.1E-15 90.8 -0.4 70 1-73 73-142 (316)
11 COG0176 MipB Transaldolase [Ca 98.9 7.9E-10 1.7E-14 84.2 2.3 41 27-67 1-45 (239)
12 TIGR00874 talAB transaldolase. 98.8 7.6E-10 1.6E-14 86.7 -0.4 70 1-73 72-141 (317)
13 cd00957 Transaldolase_TalAB Tr 98.8 9E-10 1.9E-14 86.1 -0.4 70 1-73 72-141 (313)
14 PRK05269 transaldolase B; Prov 98.8 1E-09 2.2E-14 85.8 -0.3 70 1-73 74-143 (318)
15 PRK12309 transaldolase/EF-hand 98.7 1.6E-09 3.4E-14 86.7 -0.3 70 1-73 78-147 (391)
16 PRK03343 transaldolase; Valida 98.7 2.8E-08 6E-13 79.4 4.7 60 24-83 2-72 (368)
17 cd00955 Transaldolase_like Tra 98.5 1.1E-07 2.4E-12 75.3 4.2 45 38-82 12-58 (338)
18 cd00439 Transaldolase Transald 98.4 3.7E-07 8E-12 69.0 4.3 47 36-82 2-52 (252)
19 TIGR00876 tal_mycobact transal 98.2 1.3E-06 2.9E-11 69.7 4.1 41 39-79 16-58 (350)
20 PF00923 Transaldolase: Transa 97.7 2.1E-05 4.6E-10 59.8 2.4 42 36-77 1-47 (287)
21 cd00956 Transaldolase_FSA Tran 97.6 7.7E-05 1.7E-09 54.9 4.3 44 36-80 2-49 (211)
22 PRK01362 putative translaldola 97.4 0.00018 3.8E-09 53.7 3.7 42 36-79 3-48 (214)
23 COG0176 MipB Transaldolase [Ca 97.3 5.1E-05 1.1E-09 58.1 -0.1 61 3-72 47-107 (239)
24 PRK09533 bifunctional transald 97.2 0.00047 1E-08 60.9 4.6 58 24-81 1-69 (948)
25 TIGR00875 fsa_talC_mipB fructo 97.1 0.00047 1E-08 51.3 3.3 42 36-79 3-48 (213)
26 PRK12656 fructose-6-phosphate 97.1 0.00045 9.8E-09 51.9 2.8 42 38-80 5-50 (222)
27 TIGR02134 transald_staph trans 97.0 0.00038 8.1E-09 52.9 2.3 43 36-79 8-54 (236)
28 PRK12376 putative translaldola 97.0 0.00053 1.1E-08 52.0 2.3 42 36-78 8-53 (236)
29 PRK12653 fructose-6-phosphate 96.8 0.00095 2E-08 50.0 2.8 31 36-66 3-37 (220)
30 PRK12655 fructose-6-phosphate 96.8 0.0011 2.4E-08 49.7 2.7 31 36-66 3-37 (220)
31 PF00923 Transaldolase: Transa 96.2 0.00065 1.4E-08 51.7 -1.7 64 2-73 59-124 (287)
32 PRK03343 transaldolase; Valida 95.8 0.0045 9.9E-08 49.8 1.6 78 1-80 89-185 (368)
33 cd00439 Transaldolase Transald 95.7 0.0025 5.3E-08 48.3 -0.3 64 2-73 67-132 (252)
34 TIGR00876 tal_mycobact transal 95.7 0.0048 1E-07 49.5 1.3 79 1-81 79-176 (350)
35 cd00955 Transaldolase_like Tra 95.1 0.0096 2.1E-07 47.4 1.1 35 1-37 76-110 (338)
36 PRK03903 transaldolase; Provis 72.3 0.86 1.9E-05 35.5 -0.8 32 1-36 30-61 (274)
37 PRK09533 bifunctional transald 68.0 2.3 5E-05 38.3 0.8 67 1-69 89-174 (948)
38 PF10360 DUF2433: Protein of u 65.5 1.7 3.6E-05 30.9 -0.4 20 7-26 105-124 (132)
39 COG4747 ACT domain-containing 36.2 4.3 9.4E-05 29.2 -2.2 38 11-51 8-50 (142)
40 cd01948 EAL EAL domain. This d 35.4 71 0.0015 21.9 3.8 59 27-85 138-202 (240)
41 PF07129 DUF1381: Protein of u 33.0 40 0.00087 20.0 1.9 33 17-50 12-44 (44)
42 smart00052 EAL Putative diguan 26.4 1.2E+02 0.0025 20.8 3.6 60 26-85 138-203 (241)
43 smart00436 TOP1Bc Bacterial DN 25.5 20 0.00043 23.3 -0.4 28 15-53 59-86 (89)
44 COG1922 WecG Teichoic acid bio 24.3 53 0.0011 25.5 1.7 24 54-77 42-65 (253)
45 PF00563 EAL: EAL domain; Int 24.0 81 0.0018 21.5 2.5 59 26-85 139-203 (236)
46 PF14542 Acetyltransf_CG: GCN5 23.2 79 0.0017 19.5 2.1 15 71-85 41-55 (78)
47 PHA01746 hypothetical protein 23.0 43 0.00092 23.8 0.9 51 15-82 40-95 (131)
48 PF04800 ETC_C1_NDUFA4: ETC co 20.9 65 0.0014 21.7 1.5 12 74-85 58-69 (101)
49 KOG0334|consensus 20.3 77 0.0017 29.3 2.2 64 7-70 486-559 (997)
No 1
>PTZ00411 transaldolase-like protein; Provisional
Probab=99.87 E-value=1.8e-22 Score=158.14 Aligned_cols=62 Identities=55% Similarity=0.852 Sum_probs=59.6
Q ss_pred ccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhc
Q psy6604 23 EVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84 (85)
Q Consensus 23 em~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~ 84 (85)
+||+|+|||++|+|||||||++.|++|+|+|+|||||||++|++.|+|++||+++++|+++.
T Consensus 1 m~~~L~~L~~~t~vv~Dt~d~~~i~~~~p~daTtNPslil~a~~~~~y~~li~~a~~~~~~~ 62 (333)
T PTZ00411 1 MPNQLEALKEHTTVVADTGDFSLLKKFQPEDATTNPSLVLAAAQMPEYAHLIDDAIKYAKAN 62 (333)
T ss_pred CCCHHHHhhCCeEEecCCCCHHHHHhcCCCCCCCCHHHHHHHhcChHHHHHHHHHHHHHhhc
Confidence 47899999999999999999999999999999999999999999999999999999998764
No 2
>PRK12346 transaldolase A; Provisional
Probab=99.83 E-value=6.8e-21 Score=148.51 Aligned_cols=62 Identities=53% Similarity=0.939 Sum_probs=59.7
Q ss_pred cccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhcC
Q psy6604 24 VDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85 (85)
Q Consensus 24 m~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~~ 85 (85)
||+|+|||++|+|||||||++.|++|+|+|+|||||||++|.+.|+|+++|+++++|+++.|
T Consensus 1 m~~L~~Lk~~t~vv~Dtgd~~~i~~~~p~daTtNPsli~~a~~~~~y~~li~~ai~~~~~~~ 62 (316)
T PRK12346 1 MNQLDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGLPQYQHLIDDAIAWGKKQG 62 (316)
T ss_pred CChHHHhhCCeEEecCCCCHHHHHhcCCCccccCHHHHHHHhcChhhHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999988653
No 3
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=99.79 E-value=8.5e-20 Score=142.36 Aligned_cols=60 Identities=62% Similarity=0.955 Sum_probs=57.8
Q ss_pred ccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhc
Q psy6604 25 DASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84 (85)
Q Consensus 25 ~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~ 84 (85)
|+|+|||++|+|||||||+++|++|+|+|+|||||||++|++.|.|+++|+++++|+++.
T Consensus 1 ~~L~~L~~~t~vv~Dtgd~~~I~~~~p~~aTtNPsi~~~A~~~~~Y~~~i~~~~~~~~~~ 60 (317)
T TIGR00874 1 NQLDQLKQFTVVVADTGDIEAIKKYQPQDATTNPSLILAAAQLPKYAELIDEAVAWGKKQ 60 (317)
T ss_pred ChHHHhhcCeEEEeCCCCHHHHHhCCCCccccCHHHHHHHhCChHHHHHHHHHHHHhhhc
Confidence 579999999999999999999999999999999999999999999999999999998765
No 4
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=99.77 E-value=3.4e-19 Score=141.74 Aligned_cols=61 Identities=48% Similarity=0.757 Sum_probs=58.5
Q ss_pred cccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhc
Q psy6604 24 VDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84 (85)
Q Consensus 24 m~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~ 84 (85)
+|+|+|||++|+||+||||++.|++|+|+|||||||||+++++.|.|+++|++++.|+++.
T Consensus 3 ~~~L~~L~~~t~vv~Dtgd~~~i~~~~p~~aTtNPsli~~a~~~~~y~~~i~~~~~~~~~~ 63 (391)
T PRK12309 3 ASLLEQLRQMTVVVADTGDIQAIEKFTPRDATTNPSLITAAAQMPQYQSIVDETLRQARKE 63 (391)
T ss_pred cCHHHHHHcCcEEecCCCCHHHHHhcCCCccccCHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 4899999999999999999999999999999999999999999999999999999998753
No 5
>PRK05269 transaldolase B; Provisional
Probab=99.73 E-value=2.1e-18 Score=134.18 Aligned_cols=61 Identities=59% Similarity=0.882 Sum_probs=58.4
Q ss_pred ccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhh
Q psy6604 23 EVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQ 83 (85)
Q Consensus 23 em~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~ 83 (85)
+|++|+|||++|+||+||||++.|++|.|+|+|||||||++|.+.+.|+++|++++.+++.
T Consensus 1 ~~~~L~~L~~~t~vv~Dtgdl~~i~~~~p~g~TtNPsli~ka~~~~~Y~~~i~~~~~~~~~ 61 (318)
T PRK05269 1 MTNKLEQLKQFTTVVADTGDIEAIKKYQPQDATTNPSLILKAAQIPEYAPLIDDAVAWAKQ 61 (318)
T ss_pred CCCHHHHHHhCCEEEcCCCCHHHHHhcCCCceeeCHHHHHHHhcCHhHHHHHHHHHHhhcc
Confidence 4689999999999999999999999999999999999999999999999999999998765
No 6
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=99.73 E-value=2.8e-18 Score=133.47 Aligned_cols=60 Identities=55% Similarity=0.936 Sum_probs=57.7
Q ss_pred ccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhc
Q psy6604 25 DASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84 (85)
Q Consensus 25 ~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~ 84 (85)
|+|+|||++|+||+||||++.|++|.|+|+|||||||++|.+.|.|+++|++++.|+++.
T Consensus 1 ~~L~~L~~~t~vv~Dtgdl~~I~~~~p~gaTtNPsli~ka~~~~~y~~~i~~~~~~~~~~ 60 (313)
T cd00957 1 NQLDQLKKFTTIVADTGDFEAIKKFKPQDATTNPSLILAAAKLPEYNKLVDEAIAYAKKK 60 (313)
T ss_pred ChHHHhhcCcEEEecCCCHHHHHhcCCCeeeeCHHHHHHHhcCHHHHHHHHHHHHHhhhc
Confidence 579999999999999999999999999999999999999999999999999999998765
No 7
>KOG2772|consensus
Probab=99.70 E-value=8.9e-18 Score=132.04 Aligned_cols=62 Identities=60% Similarity=0.877 Sum_probs=59.4
Q ss_pred cccccccccc-eeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhcC
Q psy6604 24 VDASLKLKDY-TVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85 (85)
Q Consensus 24 m~~L~~Lk~~-T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~~ 85 (85)
|+.|+||++. |+||+|||||+.|..|+|+|+|||||||++|++++.|+++++.+++|+|+++
T Consensus 13 ~ssL~qLk~~~t~vvadtgDf~~i~~~~p~daTtnpSlil~as~~~~y~~~~~~aveygk~~~ 75 (337)
T KOG2772|consen 13 RSSLEQLKASGTVVVADTGDFLAIIEYKPQDATTNPSLILAASKMPAYAELFDTAVEYGKKHG 75 (337)
T ss_pred HhhHHHHHhccCeeecCccchHHHHhcCCCCCccCHHHHHhhhccHhHHHHHHHHHHHHHHhc
Confidence 5789999999 9999999999999999999999999999999999999999999999999864
No 8
>KOG2772|consensus
Probab=99.62 E-value=4.2e-17 Score=128.23 Aligned_cols=70 Identities=37% Similarity=0.483 Sum_probs=67.6
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
||+++|+||.+|+++||||||||+|++.++++.++|. +...+|+.|+..|+...+.||+.|++||++++.
T Consensus 86 idr~~v~fg~dilk~vpGrVStEVdaRLsfDTq~tve---kA~~Likly~~~gv~k~rvliKI~sTwegI~Aa 155 (337)
T KOG2772|consen 86 IDRACVLFGTDILKGVPGRVSTEVDARLSFDTQGTVE---KARHLIKLYNEEGVPKERVLIKIASTWEGIQAA 155 (337)
T ss_pred HHHHHHHhChhhhhcCCCeeeeeecccccccchhHHH---HHHHHHHHHHhcCCChheEEEecccccchhHHH
Confidence 5899999999999999999999999999999999999 899999999999999999999999999999863
No 9
>PTZ00411 transaldolase-like protein; Provisional
Probab=98.96 E-value=9.6e-11 Score=92.25 Aligned_cols=70 Identities=40% Similarity=0.539 Sum_probs=65.6
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
+|++.|+||.++++++|||||+|++++.+.+...+|. ...+.++.|+..++..++.+|+.|++|++++..
T Consensus 84 ~d~l~v~~g~~i~~~i~G~VS~EVd~~ls~d~e~~i~---~A~~l~~l~~~~gi~~~rilIKIPaT~eGi~Aa 153 (333)
T PTZ00411 84 VDKLTVNFGVEILKIVPGRVSTEVDARLSFDKQAMVD---KARKIIKMYEEAGISKDRILIKLASTWEGIQAA 153 (333)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEccccccCHHHHHH---HHHHHHHhhhhhcCCCCcEEEEeCCCHHHHHHH
Confidence 4899999999999999999999999999999998887 789999999999999999999999999998764
No 10
>PRK12346 transaldolase A; Provisional
Probab=98.93 E-value=1.4e-10 Score=90.85 Aligned_cols=70 Identities=34% Similarity=0.438 Sum_probs=66.1
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
+|++.|+||.++++++|||||+|++++.+.+...+|. ...++++.|+..++...+.+|+.+++|+++++.
T Consensus 73 ~D~l~v~~g~ei~~~v~G~Vs~EVdp~la~d~e~~i~---~A~~l~~l~~~~gi~~~~i~IKIPaT~eGi~A~ 142 (316)
T PRK12346 73 CDKLAVNFGAEILKSVPGRVSTEVDARLSFDREKSIE---KARHLVDLYQQQGIDKSRILIKLASTWEGIRAA 142 (316)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEccccccCHHHHHH---HHHHHHHHhhhcCCCCCcEEEEeCCCHHHHHHH
Confidence 5899999999999999999999999999999999997 789999999999999999999999999998864
No 11
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=7.9e-10 Score=84.18 Aligned_cols=41 Identities=41% Similarity=0.536 Sum_probs=37.7
Q ss_pred ccccccceeeeeccccHHHHHhhCC----CCCCCChHHHHhhhCc
Q psy6604 27 SLKLKDYTVVVADTGDFEAMKKYKP----TDATTNPSLILQAATM 67 (85)
Q Consensus 27 L~~Lk~~T~VvADTgd~~~I~~y~p----~DaTTNPSLIl~Aa~~ 67 (85)
++++++++.+++||+|++.|++|.| .|+|||||||++|.+.
T Consensus 1 ~~~~~~~~~~~~Dt~d~~eikk~~~~g~v~GvTTNPSli~ka~~~ 45 (239)
T COG0176 1 LDGLSQWMELFLDTADIEEIKKLLPIGPVDGVTTNPSLILKAGAK 45 (239)
T ss_pred CchhhhhHhheecccCHHHHHHhhhcCCcCCcCCCHHHHHhhccc
Confidence 4678888999999999999999999 9999999999999853
No 12
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=98.79 E-value=7.6e-10 Score=86.72 Aligned_cols=70 Identities=39% Similarity=0.503 Sum_probs=65.9
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
+|++.|+||.++++++|||||+|++++.+.+...+|. ...++++.|+..++.....+|+.+++|++++..
T Consensus 72 ~D~l~v~~g~~i~~~i~G~VS~EVdprls~d~~~~i~---~A~~l~~l~~~~gi~~~~v~IKIPaT~eGi~A~ 141 (317)
T TIGR00874 72 LDKLAVNFGLEILKIVPGRVSTEVDARLSFDTEATVE---KARHLIKLYEDAGVDKKRILIKIASTWEGIRAA 141 (317)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHH---HHHHHHHHhHhcCCCCCcEEEEeCCCHHHHHHH
Confidence 5899999999999999999999999999999998887 788999999999999999999999999999876
No 13
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=98.78 E-value=9e-10 Score=86.06 Aligned_cols=70 Identities=41% Similarity=0.554 Sum_probs=65.5
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
+|++.|+||.++++++|||||+|++++.+.+...+|. ...++++.|+..++...+.+|+.+++|++++..
T Consensus 72 ~d~l~v~~~~~i~~~i~G~Vs~EVdp~la~d~~~~i~---~A~~l~~~~~~~gi~~~~i~IKIPaT~eGi~A~ 141 (313)
T cd00957 72 LDKLLVNFGTEILKLIPGRVSTEVDARLSFDTNATIA---KARKLIKLYEEAGIDKERILIKIAATWEGIQAA 141 (313)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHH---HHHHHHHHhHhcCCCCCcEEEEeCCCHHHHHHH
Confidence 4899999999999999999999999999999998887 788999999999999999999999999999876
No 14
>PRK05269 transaldolase B; Provisional
Probab=98.77 E-value=1e-09 Score=85.75 Aligned_cols=70 Identities=36% Similarity=0.505 Sum_probs=65.6
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
+|++.|+||.++++++||+||+|++++.+.+...+|. ...++++.|+..++..+..+|+.+++|++++..
T Consensus 74 ~d~l~v~~g~ei~~~i~G~Vs~EVdp~l~~d~~~~i~---~A~~l~~~~~~~gi~~~~v~IKIPaT~eGi~A~ 143 (318)
T PRK05269 74 IDKLAVNFGLEILKLIPGRVSTEVDARLSFDTEATIA---KARKLIALYEEAGISKDRILIKIASTWEGIRAA 143 (318)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHH---HHHHHHHHhhhcCCCCCcEEEEeCCCHHHHHHH
Confidence 5899999999999999999999999999999998887 788999999999999988999999999999876
No 15
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.74 E-value=1.6e-09 Score=86.70 Aligned_cols=70 Identities=33% Similarity=0.491 Sum_probs=65.1
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
+|++.|+||.++++++|||||+|++++.+.+...+|. ....+++.|+..++...+.+|+.+++|++++..
T Consensus 78 ~d~l~v~~g~~i~~~i~G~Vs~EVdprl~~d~~~~i~---~A~~l~~~~~~~gi~~~~v~IKIPaT~eGi~A~ 147 (391)
T PRK12309 78 FDRLAVAFGLKILKIVPGRVSTEVDARLSYDTEATIA---KARKLISLYEDAGISRDRVLIKIASTWEGIKAA 147 (391)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecccccCHHHHHH---HHHHHHHHhhhhcCCCCcEEEEeCCCHHHHHHH
Confidence 4899999999999999999999999999999988887 788899999999999889999999999998865
No 16
>PRK03343 transaldolase; Validated
Probab=98.66 E-value=2.8e-08 Score=79.42 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=48.6
Q ss_pred ccccccccccee-eeec--------cccHH-HHHhhCCCCCCCChHHHHhhh-CchHHHHHHHHHHHhhhh
Q psy6604 24 VDASLKLKDYTV-VVAD--------TGDFE-AMKKYKPTDATTNPSLILQAA-TMPQYQHLINKAVEFGKQ 83 (85)
Q Consensus 24 m~~L~~Lk~~T~-VvAD--------Tgd~~-~I~~y~p~DaTTNPSLIl~Aa-~~~~y~~li~~a~~~~~~ 83 (85)
|+.|.+|.++.. +=+| ||+|. +|++|.|+|+|||||++.+|. +.+.|++.|++.+++++.
T Consensus 2 ~~~l~~l~~~g~s~WlD~i~R~~l~~g~l~~lI~~~g~~GaTsNPsIf~~Ai~~~~~Y~~~i~~l~~~~~~ 72 (368)
T PRK03343 2 MNPLQALSALGQSIWLDDLSRDRLTSGNLARLIDEKGVVGVTSNPAIFQKAIAGGDAYDAQIAELAAAGAD 72 (368)
T ss_pred CcHHHHHHHcCcEEeecCCccccccCcCHHHHHHhCCCCeeccCHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 455666655533 3344 59999 899999999999999999999 789999999999987653
No 17
>cd00955 Transaldolase_like Transaldolase-like proteins from plants and bacteria. Transaldolase is found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=98.51 E-value=1.1e-07 Score=75.28 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=41.5
Q ss_pred eccccHHHH-HhhCCCCCCCChHHHHhhhCc-hHHHHHHHHHHHhhh
Q psy6604 38 ADTGDFEAM-KKYKPTDATTNPSLILQAATM-PQYQHLINKAVEFGK 82 (85)
Q Consensus 38 ADTgd~~~I-~~y~p~DaTTNPSLIl~Aa~~-~~y~~li~~a~~~~~ 82 (85)
-|||++..| ++|.|.|+|||||++++|.+. +.|+++|++.+.+++
T Consensus 12 l~~g~l~~li~~~~~~g~TsNPsi~~~Ai~~~~~y~~~i~~~~~~~~ 58 (338)
T cd00955 12 IDNGFLKRLIEEQGVVGVTSNPAIFEKAIAGSAAYDDQIRALKGQGL 58 (338)
T ss_pred ccccCHHHHHHhCCCceeccCHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 478999988 999999999999999999988 999999999988753
No 18
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=98.39 E-value=3.7e-07 Score=69.03 Aligned_cols=47 Identities=23% Similarity=0.067 Sum_probs=42.3
Q ss_pred eeeccccHHHHHhhC----CCCCCCChHHHHhhhCchHHHHHHHHHHHhhh
Q psy6604 36 VVADTGDFEAMKKYK----PTDATTNPSLILQAATMPQYQHLINKAVEFGK 82 (85)
Q Consensus 36 VvADTgd~~~I~~y~----p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~ 82 (85)
+..||.|++.|+++. +.|+|||||+++++...+.|.+.+.+++.+++
T Consensus 2 ~~lDt~d~~~i~~~~~~~~~~GvTTNPsiv~~~~~~~~~~~~~~~~l~~~~ 52 (252)
T cd00439 2 PWYDTLDRPATDLLPLIRGVRGVTTNPSIIQAAISTSNAYNDQFRTLVESG 52 (252)
T ss_pred EEeeCCCHHHHHHhhccCCCCeeccCHHHHHHHhcCchhhHHHHHHHHHcc
Confidence 568999999999988 99999999999999999999999988887654
No 19
>TIGR00876 tal_mycobact transaldolase, mycobacterial type. This model describes one of three related but easily separable famiiles of known and putative transaldolases. This family and the family typified by E. coli TalA and TalB both contain experimentally verified examples.
Probab=98.22 E-value=1.3e-06 Score=69.68 Aligned_cols=41 Identities=32% Similarity=0.428 Sum_probs=36.5
Q ss_pred ccccH-HHHHhhCCCCCCCChHHHHhhhCch-HHHHHHHHHHH
Q psy6604 39 DTGDF-EAMKKYKPTDATTNPSLILQAATMP-QYQHLINKAVE 79 (85)
Q Consensus 39 DTgd~-~~I~~y~p~DaTTNPSLIl~Aa~~~-~y~~li~~a~~ 79 (85)
++||| ++|+++.|.|+|||||++.+|.+.+ .|++.|++...
T Consensus 16 ~~G~l~~lI~~~~~~G~TsNPsif~~Ai~~~~~Y~~~i~~l~~ 58 (350)
T TIGR00876 16 ENGDFLELIDKGAICGATSNPSIFCEAISEGAFYDAEIAELAA 58 (350)
T ss_pred cCCCHHHHHHhCCCCcccCCHHHHHHHHhCCHHHHHHHHHHHh
Confidence 45999 9999999999999999999999876 59999988654
No 20
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=97.71 E-value=2.1e-05 Score=59.76 Aligned_cols=42 Identities=31% Similarity=0.491 Sum_probs=32.2
Q ss_pred eeeccccHHHHHhhCC----CCCCCChHHHHhhhC-chHHHHHHHHH
Q psy6604 36 VVADTGDFEAMKKYKP----TDATTNPSLILQAAT-MPQYQHLINKA 77 (85)
Q Consensus 36 VvADTgd~~~I~~y~p----~DaTTNPSLIl~Aa~-~~~y~~li~~a 77 (85)
+-.||.|++.|+++.| .|+||||+|+.+|.. ...|...+.+.
T Consensus 1 i~~Dsad~~~i~~~~~~~~~~GvTTNPsii~~a~~~~~~~~~~i~~l 47 (287)
T PF00923_consen 1 IWLDSADRDEIKELLPNGGIDGVTTNPSIIAKALSGSEAYDEAIKEL 47 (287)
T ss_dssp EEEESSSHHHHHHHHHTTTESEEEE-HHHHHHHHTGHHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHhhccccCCCccCHHHHHHHHcccccHHHHHHHH
Confidence 3579999999999999 999999999999977 22444444433
No 21
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.63 E-value=7.7e-05 Score=54.92 Aligned_cols=44 Identities=32% Similarity=0.527 Sum_probs=33.6
Q ss_pred eeeccccHHHHHhhCC----CCCCCChHHHHhhhCchHHHHHHHHHHHh
Q psy6604 36 VVADTGDFEAMKKYKP----TDATTNPSLILQAATMPQYQHLINKAVEF 80 (85)
Q Consensus 36 VvADTgd~~~I~~y~p----~DaTTNPSLIl~Aa~~~~y~~li~~a~~~ 80 (85)
+-.||.|++.|+++.+ .++||||||+.++-. +.|...+.+..+.
T Consensus 2 ~~lDsa~~~ei~~~~~~~~i~GvTTNPsll~k~~~-~~~~~~~~~i~~~ 49 (211)
T cd00956 2 IFLDTADLEEIKKASETGLLDGVTTNPSLIAKSGR-IDFEAVLKEICEI 49 (211)
T ss_pred EEecCCCHHHHHHHHhcCCcCccccCHHHHHhcCC-cCHHHHHHHHHHh
Confidence 3479999999999998 599999999998644 3455566555443
No 22
>PRK01362 putative translaldolase; Provisional
Probab=97.40 E-value=0.00018 Score=53.66 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=32.3
Q ss_pred eeeccccHHHHHhhCCC----CCCCChHHHHhhhCchHHHHHHHHHHH
Q psy6604 36 VVADTGDFEAMKKYKPT----DATTNPSLILQAATMPQYQHLINKAVE 79 (85)
Q Consensus 36 VvADTgd~~~I~~y~p~----DaTTNPSLIl~Aa~~~~y~~li~~a~~ 79 (85)
+-.||.|++.|+++.+. ++||||||+.++-. .|.+++.+..+
T Consensus 3 ~~lDsA~~~ei~~~~~~~~i~GvTTNPsll~k~g~--~~~~~~~~i~~ 48 (214)
T PRK01362 3 FFIDTANVEEIKEANELGVLDGVTTNPSLIAKEGR--DFEEVIKEICS 48 (214)
T ss_pred EEEecCCHHHHHHHHhCCCcceEcCCHHHHHhcCC--CHHHHHHHHHH
Confidence 45799999999988874 89999999999753 45555555543
No 23
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=5.1e-05 Score=58.06 Aligned_cols=61 Identities=31% Similarity=0.397 Sum_probs=49.5
Q ss_pred hHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHH
Q psy6604 3 KLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQH 72 (85)
Q Consensus 3 k~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~ 72 (85)
+.++.||.++++++|||| +|++++.+++...+|- ...++++.|.-.+ .+|+.|++|++++.
T Consensus 47 ~~~~~~~~ei~~~v~G~v-~e~~~~ls~d~e~mi~---eA~~L~~~~~~~~-----i~IKIP~T~eGl~A 107 (239)
T COG0176 47 RDAVEFGKEILKIVPGRV-TEVDEVLSFDAEAMIE---EARRLAKLIDNVG-----IVIKIPATWEGLKA 107 (239)
T ss_pred ccHHHHHHHHHhcCCCCC-eEeeeeecccHHHHHH---HHHHHHHhcCcCC-----eEEEeCCCHHHHHH
Confidence 457899999999999999 9999999999988886 5566666665544 67888888888654
No 24
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=97.19 E-value=0.00047 Score=60.95 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=44.5
Q ss_pred ccccccccccee-eeec--------cccHHH-HHhhCCCCCCCChHHHHhhhC-chHHHHHHHHHHHhh
Q psy6604 24 VDASLKLKDYTV-VVAD--------TGDFEA-MKKYKPTDATTNPSLILQAAT-MPQYQHLINKAVEFG 81 (85)
Q Consensus 24 m~~L~~Lk~~T~-VvAD--------Tgd~~~-I~~y~p~DaTTNPSLIl~Aa~-~~~y~~li~~a~~~~ 81 (85)
||.|.+|.++.. +=.| +|++.. |+.+.+.++|||||++.+|.. .+.|++.|.+.+.++
T Consensus 1 ~~~l~~l~~~gqsiWlD~l~R~~l~~g~l~~li~~~~~~GvTsNPsIf~~Ai~~~~~Y~~~i~~l~~~~ 69 (948)
T PRK09533 1 MNPLKALAQHGQSVWLDFLARGFIAKGELKRLVEEDGLRGVTSNPAIFEKAIGSSDEYDDAIKAALAEG 69 (948)
T ss_pred CchHHHHHHcCcEEeecccchhcccCchHHHHHHhCCCceeecCHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 345555555432 3344 488776 999999999999999999975 799999999988765
No 25
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=97.12 E-value=0.00047 Score=51.31 Aligned_cols=42 Identities=31% Similarity=0.456 Sum_probs=31.9
Q ss_pred eeeccccHHHHHhhCC----CCCCCChHHHHhhhCchHHHHHHHHHHH
Q psy6604 36 VVADTGDFEAMKKYKP----TDATTNPSLILQAATMPQYQHLINKAVE 79 (85)
Q Consensus 36 VvADTgd~~~I~~y~p----~DaTTNPSLIl~Aa~~~~y~~li~~a~~ 79 (85)
+-.||.|++.|+++.+ .++||||||+.++-. .|..++.+..+
T Consensus 3 ~~lDsAd~~~i~~~~~~~~i~GvTTNPsll~k~g~--~~~~~~~~i~~ 48 (213)
T TIGR00875 3 FFLDTANVEEIKKAAELGILAGVTTNPSLIAKEGR--SFWEVLKEIQE 48 (213)
T ss_pred EEEcCCCHHHHHHHHhcCCcceEeCCHHHHHhcCC--CHHHHHHHHHH
Confidence 3469999999999887 688999999998754 25555555443
No 26
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=97.06 E-value=0.00045 Score=51.91 Aligned_cols=42 Identities=29% Similarity=0.417 Sum_probs=31.5
Q ss_pred eccccHHHHHhhCC----CCCCCChHHHHhhhCchHHHHHHHHHHHh
Q psy6604 38 ADTGDFEAMKKYKP----TDATTNPSLILQAATMPQYQHLINKAVEF 80 (85)
Q Consensus 38 ADTgd~~~I~~y~p----~DaTTNPSLIl~Aa~~~~y~~li~~a~~~ 80 (85)
-||.|++.|+++.+ .++||||||+.++.. ..|..++.+..+.
T Consensus 5 lDtAd~~~i~~~~~~~~i~GvTTNPsll~k~g~-~~~~~~~~~i~~~ 50 (222)
T PRK12656 5 LDTLNLEAIKKWHEILPLAGVTSNPSIAKKEGD-IDFFERIREVREI 50 (222)
T ss_pred EecCCHHHHHHHHhcCCcceEeCCHHHHHhcCC-CCHHHHHHHHHHH
Confidence 59999999988876 689999999999742 2455666555443
No 27
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=97.05 E-value=0.00038 Score=52.94 Aligned_cols=43 Identities=35% Similarity=0.560 Sum_probs=33.3
Q ss_pred eeeccccHHHHHhhCC----CCCCCChHHHHhhhCchHHHHHHHHHHH
Q psy6604 36 VVADTGDFEAMKKYKP----TDATTNPSLILQAATMPQYQHLINKAVE 79 (85)
Q Consensus 36 VvADTgd~~~I~~y~p----~DaTTNPSLIl~Aa~~~~y~~li~~a~~ 79 (85)
+-.||.|++.|+++.+ .++||||||+.++. ...|..++.+.++
T Consensus 8 ~flDtAd~~ei~~~~~~g~i~GvTTNPsll~k~g-~~~~~~~~~~i~~ 54 (236)
T TIGR02134 8 VFADGANLEEMVKFSTHPYVKGFTTNPSLMRKAG-IVDYEAFAHEALA 54 (236)
T ss_pred EEEeCCCHHHHHHHHhCCCeeEEeCCHHHHHhcC-CCCHHHHHHHHHH
Confidence 5579999999998887 57999999999864 2346677766543
No 28
>PRK12376 putative translaldolase; Provisional
Probab=96.95 E-value=0.00053 Score=52.02 Aligned_cols=42 Identities=31% Similarity=0.451 Sum_probs=31.9
Q ss_pred eeeccccHHHHHhhCC----CCCCCChHHHHhhhCchHHHHHHHHHH
Q psy6604 36 VVADTGDFEAMKKYKP----TDATTNPSLILQAATMPQYQHLINKAV 78 (85)
Q Consensus 36 VvADTgd~~~I~~y~p----~DaTTNPSLIl~Aa~~~~y~~li~~a~ 78 (85)
+-.||.|++.|+++.+ .++||||||+.++.. ..|..++.+..
T Consensus 8 ~flDtAd~~eik~~~~~g~i~GVTTNPsll~k~g~-~~~~~~~~~i~ 53 (236)
T PRK12376 8 IFADGADLEEMLAAYKNPLVKGFTTNPSLMRKAGV-TDYKAFAKEVL 53 (236)
T ss_pred EEEecCCHHHHHHHHhCCCeeEEECCHHHHHhcCC-CCHHHHHHHHH
Confidence 4579999999999887 579999999999743 23555555543
No 29
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=96.83 E-value=0.00095 Score=49.95 Aligned_cols=31 Identities=35% Similarity=0.442 Sum_probs=26.0
Q ss_pred eeeccccHHHHHhhCC----CCCCCChHHHHhhhC
Q psy6604 36 VVADTGDFEAMKKYKP----TDATTNPSLILQAAT 66 (85)
Q Consensus 36 VvADTgd~~~I~~y~p----~DaTTNPSLIl~Aa~ 66 (85)
+-.||.|++.|+++.+ .++||||||+.++..
T Consensus 3 ~flDtA~~~~i~~~~~~~~i~GvTTNPsll~k~g~ 37 (220)
T PRK12653 3 LYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKK 37 (220)
T ss_pred EEEecCCHHHHHHHHhCCCccEEeCCHHHHHhcCC
Confidence 3469999999988876 679999999998744
No 30
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=96.76 E-value=0.0011 Score=49.66 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=25.7
Q ss_pred eeeccccHHHHHhhCC----CCCCCChHHHHhhhC
Q psy6604 36 VVADTGDFEAMKKYKP----TDATTNPSLILQAAT 66 (85)
Q Consensus 36 VvADTgd~~~I~~y~p----~DaTTNPSLIl~Aa~ 66 (85)
+-.||.|++.|+++.+ .++||||||+.++..
T Consensus 3 ~flDtA~~~~i~~~~~~~~i~GvTTNPsll~k~g~ 37 (220)
T PRK12655 3 LYLDTANVAEVERLARIFPIAGVTTNPSIIAASKE 37 (220)
T ss_pred EEEecCCHHHHHHHHhCCCccEEeCCHHHHHhcCC
Confidence 3469999999987765 689999999998754
No 31
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=96.16 E-value=0.00065 Score=51.68 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=53.9
Q ss_pred hhHHHhHchhhhhcC--CCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 2 DKLVILFGTEILNII--PGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 2 dk~~v~~g~~~l~~v--~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
|++.|+.|.++++++ +|+||.|++++...+...+|. ...+..+.|. ++..+|+.++++++.+..
T Consensus 59 ~~l~~~~~~~~~~~lg~~G~vsvqv~p~~~~d~e~~i~---~A~~l~~~~~-----r~~v~IKIPaT~~Gi~A~ 124 (287)
T PF00923_consen 59 DKLAVEDGREALDLLGKDGPVSVQVDPRLAYDAEEMIE---EARRLHALFE-----RPNVVIKIPATEEGIKAI 124 (287)
T ss_dssp HHHHHHHHHHHHCCHTSSSEEEEE-SGGGTTSHHHHHH---HHHHHHHHHH-----GGTEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCccccCHHHHHH---HHHHHHHhcc-----ccCeeEECCCCHHHHHHH
Confidence 789999999999999 999999999988888877776 5666777776 788899999999988753
No 32
>PRK03343 transaldolase; Validated
Probab=95.80 E-value=0.0045 Score=49.81 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=50.3
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeee-------------------eccccHHHHHhhCCCCCCCChHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVV-------------------ADTGDFEAMKKYKPTDATTNPSLI 61 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~Vv-------------------ADTgd~~~I~~y~p~DaTTNPSLI 61 (85)
+|.+.+.| +.++.++|+||+|++++.+.+...+|- +--..+.+|+.....++.+|-.||
T Consensus 89 aD~L~p~~--e~~~g~~G~VS~EVdp~la~d~e~~i~eA~~L~~~~~~~nv~IKIPaT~~Gi~Ai~~L~~~GI~vn~Tli 166 (368)
T PRK03343 89 CDVLRPVY--EATGGVDGRVSIEVSPRLAHDTEATIAEARRLWAAVDRPNLMIKIPATPEGLPAIEALIAEGISVNVTLI 166 (368)
T ss_pred HHHHHHHH--HHhCCCCCeEEEEeccccccCHHHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHHHHHCCCceeEeee
Confidence 47888888 899999999999998765555443332 222346666666666666666666
Q ss_pred HhhhCchHHHHHHHHHHHh
Q psy6604 62 LQAATMPQYQHLINKAVEF 80 (85)
Q Consensus 62 l~Aa~~~~y~~li~~a~~~ 80 (85)
..+.|-..-.+.+.+.++.
T Consensus 167 FS~~Qa~a~~eA~~~Gl~~ 185 (368)
T PRK03343 167 FSVERYRAVADAYLRGLEK 185 (368)
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 6665554444444444433
No 33
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=95.71 E-value=0.0025 Score=48.33 Aligned_cols=64 Identities=22% Similarity=0.057 Sum_probs=45.8
Q ss_pred hhHHHhHchhhhhcC--CCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 2 DKLVILFGTEILNII--PGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 2 dk~~v~~g~~~l~~v--~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
+|.+++++.++++.+ +|+||.|++++...+...+|. -..++.+.+.. +..+|+.+++|++++..
T Consensus 67 ~~~~~~~~~~i~~~~~~~G~Vs~ev~~~~~~d~~~mi~---~A~~l~~~~~~-----~nv~IKIPaT~~Gl~A~ 132 (252)
T cd00439 67 IQDACKLFEPIYDQTEADGRVSVEVSARLADDTQGMVE---AAKYLSKVVNR-----RNIYIKIPATAEGIPAI 132 (252)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEEeccccCCHHHHHH---HHHHHHHhcCc-----ccEEEEeCCCHHHHHHH
Confidence 568899999999999 999999999877776666654 23333333322 33777888888777654
No 34
>TIGR00876 tal_mycobact transaldolase, mycobacterial type. This model describes one of three related but easily separable famiiles of known and putative transaldolases. This family and the family typified by E. coli TalA and TalB both contain experimentally verified examples.
Probab=95.68 E-value=0.0048 Score=49.52 Aligned_cols=79 Identities=23% Similarity=0.237 Sum_probs=52.1
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeee-------------------eccccHHHHHhhCCCCCCCChHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVV-------------------ADTGDFEAMKKYKPTDATTNPSLI 61 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~Vv-------------------ADTgd~~~I~~y~p~DaTTNPSLI 61 (85)
+|.+.+.| +.++.++|+||+|++++.+.+...+|. +--..+++|+.....++.+|-.||
T Consensus 79 ~D~L~p~~--e~~~g~~G~VS~EVdP~la~d~e~~i~eA~~L~~~~~~~nv~IKIPaT~~Gi~Ai~~L~~~GI~vNvTli 156 (350)
T TIGR00876 79 CDALMPLW--EDSDGNDGRISIEIDPFLADDAAKSIDEAIELFKILDRPNLFIKIPASEAGIEAISALLAAGIPVNVTLI 156 (350)
T ss_pred HHHHHHHH--HHhCCCCCcEEEEEccccccCHHHHHHHHHHHHHhhCCCCEEEEeCCCHHHHHHHHHHHHCCCceeEEEe
Confidence 47888888 799999999999998755544333221 333446777777777777777777
Q ss_pred HhhhCchHHHHHHHHHHHhh
Q psy6604 62 LQAATMPQYQHLINKAVEFG 81 (85)
Q Consensus 62 l~Aa~~~~y~~li~~a~~~~ 81 (85)
..+.|-.+-.+.+.+.++.+
T Consensus 157 FS~~q~~~v~eA~~~Gl~~~ 176 (350)
T TIGR00876 157 FSPKIAGEIADALAKEAEKA 176 (350)
T ss_pred ecHHHHHHHHHHHHHHHHHH
Confidence 77765544444444444433
No 35
>cd00955 Transaldolase_like Transaldolase-like proteins from plants and bacteria. Transaldolase is found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=95.06 E-value=0.0096 Score=47.45 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=28.3
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeee
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVV 37 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~Vv 37 (85)
+|++.++|+ +++.++|+||+|+|++.+.+...+|.
T Consensus 76 ~d~l~p~~~--~~~g~~G~Vs~EVdP~la~d~~~~i~ 110 (338)
T cd00955 76 CDLLAPVYE--QTGGNDGYVSLEVSPRLADDTQGTIA 110 (338)
T ss_pred HHHHHHHHh--hcCCCCCeEEEEecccccCCHHHHHH
Confidence 478899996 78999999999999877766655543
No 36
>PRK03903 transaldolase; Provisional
Probab=72.33 E-value=0.86 Score=35.54 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=23.6
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceee
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVV 36 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~V 36 (85)
+|.+...|+. -.+|+||.|++++.+.+...+|
T Consensus 30 ~d~l~p~~~~----g~~G~VS~EV~P~la~d~~~~i 61 (274)
T PRK03903 30 ADKLLPLYEK----PDDGFISIEIDPFLEDDAAGSI 61 (274)
T ss_pred HHHhHHHhcC----CCCCeEEEEEccccccCHHHHH
Confidence 3667777777 6889999999886666555444
No 37
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=68.00 E-value=2.3 Score=38.30 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=44.5
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceee-------------------eeccccHHHHHhhCCCCCCCChHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVV-------------------VADTGDFEAMKKYKPTDATTNPSLI 61 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~V-------------------vADTgd~~~I~~y~p~DaTTNPSLI 61 (85)
+|.+...+ +..+-.+|+||.|++++...+...+| =+--..+.+|+.....++.+|-.||
T Consensus 89 ~d~l~p~~--~~~~g~~G~VS~EV~P~la~d~e~~i~eA~~L~~~v~~~nv~IKIPaT~~Gl~Ai~~L~~~GI~vn~Tli 166 (948)
T PRK09533 89 ADVLRPVY--DATDGADGFVSLEVSPYLALDTEGTIAEARRLWAAVDRPNLMIKVPATPEGLPAIRQLIAEGINVNVTLL 166 (948)
T ss_pred HHHHHHHH--HhcCCCCCeEEEEEecccccCHHHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHHHHHCCCeeeEEEE
Confidence 46777777 67777999999999765444332222 1333457777777777888888877
Q ss_pred HhhhCchH
Q psy6604 62 LQAATMPQ 69 (85)
Q Consensus 62 l~Aa~~~~ 69 (85)
..+.|-..
T Consensus 167 FS~~q~~~ 174 (948)
T PRK09533 167 FSQDVYEE 174 (948)
T ss_pred ecHHHHHH
Confidence 77654333
No 38
>PF10360 DUF2433: Protein of unknown function (DUF2433); InterPro: IPR018829 This entry represents a conserved domain of 120 residues from a family fungal proteins. Their function is not known.
Probab=65.48 E-value=1.7 Score=30.91 Aligned_cols=20 Identities=40% Similarity=0.777 Sum_probs=17.8
Q ss_pred hHchhhhhcCCCcccccccc
Q psy6604 7 LFGTEILNIIPGRVSTEVDA 26 (85)
Q Consensus 7 ~~g~~~l~~v~GrvsTem~~ 26 (85)
.||..+|+|-.|||+|||+.
T Consensus 105 ~~G~lvL~I~dgri~~e~~s 124 (132)
T PF10360_consen 105 AFGSLVLDINDGRISAEMNS 124 (132)
T ss_pred cccceeeeccCceEEEEeec
Confidence 47999999999999999964
No 39
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=36.17 E-value=4.3 Score=29.20 Aligned_cols=38 Identities=34% Similarity=0.538 Sum_probs=26.3
Q ss_pred hhhhcCCCcccccccccccccccee-----eeeccccHHHHHhhCC
Q psy6604 11 EILNIIPGRVSTEVDASLKLKDYTV-----VVADTGDFEAMKKYKP 51 (85)
Q Consensus 11 ~~l~~v~GrvsTem~~L~~Lk~~T~-----VvADTgd~~~I~~y~p 51 (85)
-|+++-|||...- .+.|+++.+ -.||||||..|+..-|
T Consensus 8 vFlENk~GRL~~~---~~~L~eagINiRA~tiAdt~dFGIiRmvV~ 50 (142)
T COG4747 8 VFLENKPGRLASV---ANKLKEAGINIRAFTIADTGDFGIIRMVVD 50 (142)
T ss_pred EEecCCcchHHHH---HHHHHHcCCceEEEEeccccCcceEEEEcC
Confidence 4688899998544 445555432 4599999999886543
No 40
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=35.43 E-value=71 Score=21.88 Aligned_cols=59 Identities=12% Similarity=0.218 Sum_probs=45.3
Q ss_pred cccccccee-eee-----ccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhcC
Q psy6604 27 SLKLKDYTV-VVA-----DTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85 (85)
Q Consensus 27 L~~Lk~~T~-VvA-----DTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~~ 85 (85)
+.+|+++.. +.. +..+++.+..+.|.-+--+++++......+.++.+++..+..++..|
T Consensus 138 ~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 202 (240)
T cd01948 138 LRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLG 202 (240)
T ss_pred HHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCC
Confidence 555666644 222 23456788889998888999999999999999999999998887643
No 41
>PF07129 DUF1381: Protein of unknown function (DUF1381); InterPro: IPR009812 This entry is represented by Bacteriophage 92, Orf59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=32.99 E-value=40 Score=20.00 Aligned_cols=33 Identities=36% Similarity=0.546 Sum_probs=24.4
Q ss_pred CCccccccccccccccceeeeeccccHHHHHhhC
Q psy6604 17 PGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYK 50 (85)
Q Consensus 17 ~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~ 50 (85)
.|++-+.+...-.-..+|+|-|+++. +++++|+
T Consensus 12 tG~~h~~vtk~rdNqt~tvVeAeske-eA~~kye 44 (44)
T PF07129_consen 12 TGHPHTHVTKARDNQTFTVVEAESKE-EALKKYE 44 (44)
T ss_pred CCceeeeeeecccCceEEEEEecchH-HHHhhcC
Confidence 47777777777777788999999876 4566653
No 42
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=26.36 E-value=1.2e+02 Score=20.83 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=45.6
Q ss_pred ccccccccee-eee-c----cccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhcC
Q psy6604 26 ASLKLKDYTV-VVA-D----TGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85 (85)
Q Consensus 26 ~L~~Lk~~T~-VvA-D----Tgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~~ 85 (85)
.+..|+++.. +.. | ...++.+..+.|.-+--+++++......+..+.+++..+..++..|
T Consensus 138 ~i~~l~~~G~~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 203 (241)
T smart00052 138 TLQRLRELGVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLG 203 (241)
T ss_pred HHHHHHHCCCEEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCC
Confidence 3567777753 322 2 3455778888888888999999999999999999999988887643
No 43
>smart00436 TOP1Bc Bacterial DNA topoisomeraes I ATP-binding domain. Extension of TOPRIM in Bacterial DNA topoisomeraes I and III, Eukaryotic DNA topoisomeraes III, reverse gyrase beta subunit
Probab=25.47 E-value=20 Score=23.27 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=19.0
Q ss_pred cCCCccccccccccccccceeeeeccccHHHHHhhCCCC
Q psy6604 15 IIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTD 53 (85)
Q Consensus 15 ~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~D 53 (85)
+--|||-|++ ...|| --...|+.|+|.+
T Consensus 59 ls~GRVQtpt--------L~lIv---~R~~ei~~F~~~~ 86 (89)
T smart00436 59 LSAGRVQTPT--------LGLIV---EREREIKNFVPKP 86 (89)
T ss_pred cceecchHHH--------HHHHH---HHHHHHHcCCCCC
Confidence 5669998883 33355 3556788888876
No 44
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=24.28 E-value=53 Score=25.50 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.9
Q ss_pred CCCChHHHHhhhCchHHHHHHHHH
Q psy6604 54 ATTNPSLILQAATMPQYQHLINKA 77 (85)
Q Consensus 54 aTTNPSLIl~Aa~~~~y~~li~~a 77 (85)
+|-|+--+++|-+.++|+.++++|
T Consensus 42 v~~N~e~~~~a~~d~e~~~~i~~A 65 (253)
T COG1922 42 VTLNAEKVLLARKDPEFREILNQA 65 (253)
T ss_pred EEcCHHHHHHhccCHHHHHHHhhc
Confidence 467999999999999999999976
No 45
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=23.99 E-value=81 Score=21.52 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=46.3
Q ss_pred ccccccccee-eeec-----cccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhcC
Q psy6604 26 ASLKLKDYTV-VVAD-----TGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85 (85)
Q Consensus 26 ~L~~Lk~~T~-VvAD-----Tgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~~ 85 (85)
.+..|+++.. +..| ..+++.+..+.|.-+--+++++.... .+.++.++...++.+++.|
T Consensus 139 ~l~~l~~~G~~i~ld~~g~~~~~~~~l~~l~~~~ikld~~~~~~~~-~~~~~~~l~~l~~~~~~~~ 203 (236)
T PF00563_consen 139 NLRRLRSLGFRIALDDFGSGSSSLEYLASLPPDYIKLDGSLVRDLS-DEEAQSLLQSLINLAKSLG 203 (236)
T ss_dssp HHHHHHHCT-EEEEEEETSTCGCHHHHHHHCGSEEEEEHHGHTTTT-SHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCceeEeeeccCCcchhhhhhhcccccceeecccccccc-hhhHHHHHHHHHHHhhccc
Confidence 3555666543 2223 57899999999999999999998888 9999999999999888754
No 46
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=23.23 E-value=79 Score=19.54 Aligned_cols=15 Identities=27% Similarity=0.822 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhhhcC
Q psy6604 71 QHLINKAVEFGKQNG 85 (85)
Q Consensus 71 ~~li~~a~~~~~~~~ 85 (85)
..|++.+++|++++|
T Consensus 41 ~~L~~~~l~~a~~~~ 55 (78)
T PF14542_consen 41 KKLVEAALDYARENG 55 (78)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 468888999988764
No 47
>PHA01746 hypothetical protein
Probab=22.95 E-value=43 Score=23.82 Aligned_cols=51 Identities=20% Similarity=0.547 Sum_probs=33.1
Q ss_pred cCC--Ccccccc--cccccc-ccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhh
Q psy6604 15 IIP--GRVSTEV--DASLKL-KDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGK 82 (85)
Q Consensus 15 ~v~--GrvsTem--~~L~~L-k~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~ 82 (85)
-|| |.|.--| -....+ ||..+-..|.||+-+|..| ++.|...+++-|++.+
T Consensus 40 AvP~dg~vr~SMTiHs~nNfkKQIGiTa~DAgdL~lIa~F-----------------LeKYS~~LnkYVkFs~ 95 (131)
T PHA01746 40 AVPQDGKIRYSMTIHSQNNFRKQIGITPQDAGDLKLIAEF-----------------LEKYSDFLNEYVKFTP 95 (131)
T ss_pred ccCCCCeeEEEEEEecccchhhhcCCCccchhhHHHHHHH-----------------HHHHHHHHHHHeeecc
Confidence 355 6663233 334444 6678888889998888876 3677777777665543
No 48
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=20.87 E-value=65 Score=21.71 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=9.2
Q ss_pred HHHHHHhhhhcC
Q psy6604 74 INKAVEFGKQNG 85 (85)
Q Consensus 74 i~~a~~~~~~~~ 85 (85)
-++||+||+++|
T Consensus 58 kE~Ai~yaer~G 69 (101)
T PF04800_consen 58 KEDAIAYAERNG 69 (101)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHHcC
Confidence 367888888875
No 49
>KOG0334|consensus
Probab=20.30 E-value=77 Score=29.30 Aligned_cols=64 Identities=25% Similarity=0.309 Sum_probs=51.0
Q ss_pred hHchhhhhcCCCcccccc----ccccccccceeeeeccccHHHHHhhCCCC------CCCChHHHHhhhCchHH
Q psy6604 7 LFGTEILNIIPGRVSTEV----DASLKLKDYTVVVADTGDFEAMKKYKPTD------ATTNPSLILQAATMPQY 70 (85)
Q Consensus 7 ~~g~~~l~~v~GrvsTem----~~L~~Lk~~T~VvADTgd~~~I~~y~p~D------aTTNPSLIl~Aa~~~~y 70 (85)
.=|++|.=..|||.==.. ..+.+|+..|-+|.|.+|.--...|.|++ +-+.+-+++-+||.|.-
T Consensus 486 kRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~ 559 (997)
T KOG0334|consen 486 KRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRS 559 (997)
T ss_pred hcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHH
Confidence 347888888899863222 44889999999999999999999999965 56777778888888765
Done!