Query psy6604
Match_columns 85
No_of_seqs 106 out of 486
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 22:23:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m16_A Transaldolase; dimer, m 99.8 4.9E-21 1.7E-25 148.7 5.1 63 21-83 4-66 (329)
2 3hjz_A Transaldolase B; parach 99.8 3.8E-21 1.3E-25 149.6 4.3 62 23-84 2-63 (334)
3 3tkf_A Transaldolase; structur 99.8 2.4E-20 8.2E-25 145.6 3.0 77 6-84 11-87 (345)
4 3cwn_A Transaldolase B; direct 99.7 2.2E-17 7.6E-22 128.0 4.6 68 18-85 16-83 (337)
5 2e1d_A Transaldolase; pentose 99.6 5.2E-17 1.8E-21 125.5 2.8 64 22-85 6-70 (331)
6 3cq0_A Putative transaldolase 99.6 6.5E-17 2.2E-21 125.4 3.0 63 23-85 11-75 (339)
7 3r5e_A Transaldolase; pentose 99.4 4.9E-14 1.7E-18 110.8 2.4 60 24-83 1-71 (360)
8 3cq0_A Putative transaldolase 98.9 6.1E-11 2.1E-15 92.0 -1.4 70 1-73 86-155 (339)
9 2e1d_A Transaldolase; pentose 98.9 6.3E-11 2.2E-15 91.5 -1.6 69 1-72 81-149 (331)
10 3cwn_A Transaldolase B; direct 98.9 8.4E-11 2.9E-15 91.1 -1.4 70 1-73 94-163 (337)
11 3m16_A Transaldolase; dimer, m 98.8 2.5E-10 8.5E-15 88.6 -1.4 70 1-73 82-151 (329)
12 3hjz_A Transaldolase B; parach 98.8 3.1E-10 1.1E-14 88.2 -1.4 70 1-73 78-147 (334)
13 3clm_A Transaldolase; YP_20865 98.8 8.8E-10 3E-14 85.8 0.9 45 37-81 24-69 (352)
14 3tkf_A Transaldolase; structur 98.8 3.5E-10 1.2E-14 88.3 -1.4 70 1-73 101-170 (345)
15 1l6w_A Fructose-6-phosphate al 98.1 1.3E-06 4.5E-11 64.1 3.3 42 36-79 3-48 (220)
16 1wx0_A Transaldolase; structur 98.1 8.1E-07 2.8E-11 65.2 1.7 30 36-65 3-36 (223)
17 3clm_A Transaldolase; YP_20865 97.5 8.9E-06 3.1E-10 63.3 -1.3 62 2-73 89-150 (352)
18 3r5e_A Transaldolase; pentose 97.3 1.9E-05 6.4E-10 62.2 -1.5 35 1-37 88-122 (360)
19 3s1x_A Probable transaldolase; 97.1 0.00017 5.7E-09 53.3 1.7 42 36-79 3-51 (223)
20 1vpx_A Protein (transaldolase 97.0 0.00012 4.3E-09 54.0 0.4 47 30-78 9-59 (230)
21 3r8r_A Transaldolase; pentose 96.8 0.00047 1.6E-08 50.5 2.3 41 36-78 3-48 (212)
22 1wx0_A Transaldolase; structur 96.7 0.00012 4.2E-09 53.6 -1.6 57 4-73 47-103 (223)
23 3s1x_A Probable transaldolase; 94.4 0.0042 1.4E-07 45.8 -1.2 55 5-72 42-96 (223)
24 3r8r_A Transaldolase; pentose 94.0 0.0049 1.7E-07 45.1 -1.5 55 5-72 40-94 (212)
25 1l6w_A Fructose-6-phosphate al 93.5 0.0068 2.3E-07 44.3 -1.6 51 10-73 44-96 (220)
26 1vpx_A Protein (transaldolase 93.2 0.0056 1.9E-07 45.2 -2.4 51 9-72 55-105 (230)
27 2okr_C MAP kinase-activated pr 29.9 29 0.001 17.6 1.7 14 49-62 3-16 (26)
28 3s83_A Ggdef family protein; s 23.6 96 0.0033 21.0 3.9 59 27-85 145-209 (259)
29 2lju_A Putative oxidoreductase 20.3 42 0.0014 22.0 1.4 11 75-85 70-80 (108)
No 1
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural genomics, PSI-2, protein structure initiative; 2.79A {Oleispira antarctica} SCOP: c.1.10.1
Probab=99.82 E-value=4.9e-21 Score=148.66 Aligned_cols=63 Identities=54% Similarity=0.795 Sum_probs=60.2
Q ss_pred ccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhh
Q psy6604 21 STEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQ 83 (85)
Q Consensus 21 sTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~ 83 (85)
-|-||+|+|||++|+||+||||++.|++|+|+|+|||||||++|++.|.|+++|+++++|+++
T Consensus 4 ~~~~~~L~~Lk~~t~vv~Dtgd~~~i~~~~p~daTTNPsi~~~A~~~~~Y~~li~~~~~~~~~ 66 (329)
T 3m16_A 4 AQAKNKLEALKAMTTVVADTGDIEAIKQFKPVDATTNPSLILKAAKLANYQHLIEEAIDWALQ 66 (329)
T ss_dssp C-CCCHHHHHTTTSEEEEECSCHHHHHHHCCSEEECCHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred ccccCHHHHHhcCcEEeeCCCCHHHHHhcCCCccCCCHHHHHHHhcCHhHHHHHHHHHHHhhh
Confidence 467899999999999999999999999999999999999999999999999999999999987
No 2
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str}
Probab=99.82 E-value=3.8e-21 Score=149.56 Aligned_cols=62 Identities=52% Similarity=0.739 Sum_probs=59.3
Q ss_pred ccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhc
Q psy6604 23 EVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84 (85)
Q Consensus 23 em~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~ 84 (85)
++++|+|||++|+||+||||+++|++|+|+|+|||||||++|+++|.|+++|+++++|+++.
T Consensus 2 m~~~L~~Lk~~t~vv~Dtgd~~~i~~~~p~daTTNPsi~~~A~~~~~Y~~li~~~~~~~~~~ 63 (334)
T 3hjz_A 2 MKSILEQLSSMTVVVADTGDLDSIKKFQPRDATTNPSLILAAAKNPDYVKLIDKAIESSENT 63 (334)
T ss_dssp CCCHHHHHHTTSEEEECCCSHHHHHHHCCSSEEECHHHHHHHTTSTTTHHHHHHHHHHHHHH
T ss_pred CccHHHHHhhCeEEecCCCCHHHHHhcCCCCCCCCHHHHHHHhcChhHHHHHHHHHHHhhhc
Confidence 35789999999999999999999999999999999999999999999999999999999864
No 3
>3tkf_A Transaldolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel/TIM barrel; HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB: 3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Probab=99.79 E-value=2.4e-20 Score=145.65 Aligned_cols=77 Identities=47% Similarity=0.649 Sum_probs=58.6
Q ss_pred HhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhc
Q psy6604 6 ILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84 (85)
Q Consensus 6 v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~ 84 (85)
|..|++.+-.-.+-. .|++|+|||++|+|||||||++.|++|+|+|+|||||||++|++.|.|+++|+++++|+++.
T Consensus 11 ~~~~~~~~~~~~~~m--~~~~Ld~Lk~~t~vv~Dtgdl~~i~~~~p~daTTNPsi~~~A~~~~~Y~~li~~~~~~~~~~ 87 (345)
T 3tkf_A 11 VDLGTENLYFQSNAM--QKSVLEQLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKAN 87 (345)
T ss_dssp -----------------CCCHHHHHHHHSEEEEECSCHHHHGGGCCSEEECCHHHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccCC--ChhHHHHhhcCcEEecCCCCHHHHHhcCCCccccCHHHHHHHhcCHhHHHHHHHHHHHhhhc
Confidence 455665554433332 12689999999999999999999999999999999999999999999999999999999864
No 4
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt, transferase; 1.40A {Escherichia coli} PDB: 3kof_A 1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Probab=99.67 E-value=2.2e-17 Score=127.97 Aligned_cols=68 Identities=56% Similarity=0.806 Sum_probs=59.2
Q ss_pred CccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhcC
Q psy6604 18 GRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85 (85)
Q Consensus 18 GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~~ 85 (85)
++++-+||+|++|++++++++||||++.|++|.|.|+|||||||++|.+.+.|+++|+++++|+++.|
T Consensus 16 ~~~~~m~~~L~~L~~~~~~~~DT~dl~~i~~~~~~GvTTNPsLi~ka~~~~~y~~~i~~~~~~~~~~~ 83 (337)
T 3cwn_A 16 PRGSHMTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQS 83 (337)
T ss_dssp ------CBHHHHHTTTSEEEEECSCHHHHHHHCCSEEECCHHHHHHHHTSGGGHHHHHHHHHHHHHHC
T ss_pred chhhhhCcHHHHHHhCCEEEccCCCHHHHHHhCCCCeecCHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 45555679999999999999999999999999999999999999999988999999999999988653
No 5
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1 PDB: 2cwn_A 1f05_A
Probab=99.64 E-value=5.2e-17 Score=125.55 Aligned_cols=64 Identities=58% Similarity=0.920 Sum_probs=58.3
Q ss_pred ccc-ccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhcC
Q psy6604 22 TEV-DASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85 (85)
Q Consensus 22 Tem-~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~~ 85 (85)
+-| |+|++|+++|++++||||++.|++|.|+|+|||||||++|.+.+.|+++|+++++|+++++
T Consensus 6 ~~m~~~L~~L~~~t~~~~Dt~dl~~i~~~~~~GvTTNPsli~ka~~~~~y~~~i~~~~~~~~~~~ 70 (331)
T 2e1d_A 6 SGMESALDQLKQFTTVVADTGDFNAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAIAYGKKLG 70 (331)
T ss_dssp ---CCHHHHHTTTSEEEEECSCGGGTTTTCCSEEECCHHHHHHHHTSGGGHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHcCEEEecCcCHHHHHhhCCCCeecCHHHHHHHcCCchHHHHHHHHHHHHhhcC
Confidence 345 8899999999999999999999999999999999999999999999999999999988753
No 6
>3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt, transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae}
Probab=99.63 E-value=6.5e-17 Score=125.44 Aligned_cols=63 Identities=51% Similarity=0.831 Sum_probs=58.8
Q ss_pred cc-ccccccccc-eeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhcC
Q psy6604 23 EV-DASLKLKDY-TVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85 (85)
Q Consensus 23 em-~~L~~Lk~~-T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~~ 85 (85)
.| |+|++|+++ |.|++||||++.|++|.|+|+|||||||++|.+.+.|+++|+++++|++++|
T Consensus 11 ~m~~~L~~L~~~gt~i~lDT~dl~~i~~~~~~GvTTNPsLi~ka~~~~~y~~~i~~~~~~~~~~~ 75 (339)
T 3cq0_A 11 VATSSLEQLKKAGTHVVADSGDFEAISKYEPQDSTTNPSLILAASKLEKYARFIDAAVEYGRKHG 75 (339)
T ss_dssp -CCCHHHHHHHTTCEEEEECSCGGGTGGGCCSEEECCHHHHHHHHTCGGGHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHcCCEEEecCCCHHHHHhhCCCCeecCHHHHHHHhCChhHHHHHHHHHHHHhhcC
Confidence 35 789999999 9999999999999999999999999999999999999999999999987653
No 7
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold, transferase; 2.10A {Corynebacterium glutamicum}
Probab=99.41 E-value=4.9e-14 Score=110.84 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=55.9
Q ss_pred cccccccccc-eeeeec--------cccHH-HHHhhCCCCCCCChHHHHhh-hCchHHHHHHHHHHHhhhh
Q psy6604 24 VDASLKLKDY-TVVVAD--------TGDFE-AMKKYKPTDATTNPSLILQA-ATMPQYQHLINKAVEFGKQ 83 (85)
Q Consensus 24 m~~L~~Lk~~-T~VvAD--------Tgd~~-~I~~y~p~DaTTNPSLIl~A-a~~~~y~~li~~a~~~~~~ 83 (85)
||.|.+|+++ +.|.+| ||||+ +|++|+|+|+|||||||++| ++.|.|+++|++++++++.
T Consensus 1 m~~l~~L~~~g~siw~D~l~R~~l~sGdl~~~I~~~~~~gaTTNPsi~~kAi~~~~~Y~~~i~~~~~~~~~ 71 (360)
T 3r5e_A 1 MSHIDDLAQLGTSTWLDDLSRERITSGNLSQVIEEKSVVGVTTNPAIFAAAMSKGDSYDAQIAELKAAGAS 71 (360)
T ss_dssp CCHHHHHHHTTEEEEESCCCHHHHHTSHHHHHHHHHCCCEEECCHHHHHHHHHHCSTTHHHHHHHHHTTCC
T ss_pred CChHHHHHHcCcEEEeeCCcccccccccHHHHHHhCCCCeecCCHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 7889999999 678899 99999 89999999999999999999 6999999999999988764
No 8
>3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt, transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae}
Probab=98.92 E-value=6.1e-11 Score=91.97 Aligned_cols=70 Identities=40% Similarity=0.571 Sum_probs=66.2
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
+|++.|+||.++++++|||||+|++++.+.+...+|. ...++++.|+..++.+...+|+.|+||+++++.
T Consensus 86 ~D~l~v~~g~ei~~~v~G~VS~EV~prls~D~e~~i~---eA~~L~~l~~~~gi~r~nv~IKIPaT~eGi~A~ 155 (339)
T 3cq0_A 86 MDKILVEFGTQILKVVPGRVSTEVDARLSFDKKATVK---KALHIIKLYKDAGVPKERVLIKIASTWEGIQAA 155 (339)
T ss_dssp HHHHHHHHHHHHHTTCSSCEEEECCGGGTTCHHHHHH---HHHHHHHHHHHTTCCGGGEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeeccccCCHHHHHH---HHHHHHHHhHhhCCCCCcEEEEeCCCHHHHHHH
Confidence 4899999999999999999999999999999999998 789999999999999999999999999998864
No 9
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1 PDB: 2cwn_A 1f05_A
Probab=98.91 E-value=6.3e-11 Score=91.53 Aligned_cols=69 Identities=41% Similarity=0.555 Sum_probs=65.4
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQH 72 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~ 72 (85)
+|++.|+||.++++++|||||+|++++.+.+...+|. ...++++.|+..++.+...+|+.|+||++++.
T Consensus 81 ~D~l~v~~g~ei~~~v~G~VS~EV~prla~d~e~~i~---eA~~L~~l~~~~gi~r~nv~IKIPaT~eGi~A 149 (331)
T 2e1d_A 81 IDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVA---RARRLIELYKEAGVGKDRILIKLSSTWEGIQA 149 (331)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEECCGGGTTCHHHHHH---HHHHHHHHHHHTTCCGGGEEEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCceEEEeccccCCCHHHHHH---HHHHHHHHhHhhCCCCCcEEEEeCCCHHHHHH
Confidence 4899999999999999999999999999999999998 78999999999999999999999999999876
No 10
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt, transferase; 1.40A {Escherichia coli} PDB: 3kof_A 1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Probab=98.90 E-value=8.4e-11 Score=91.11 Aligned_cols=70 Identities=33% Similarity=0.457 Sum_probs=65.7
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
+|++.|+||.++++++|||||+|++++.+.+...+|. ...++++.|+..++.+...+|+.|+||+++++.
T Consensus 94 ~D~l~v~~g~ei~~~v~G~VS~EVdprla~D~e~~i~---eA~~L~~l~~~~gi~r~nv~IKIPaT~eGi~A~ 163 (337)
T 3cwn_A 94 TDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIA---KAKRLIKLYNDAGISNDRILIKLASTWQGIRAA 163 (337)
T ss_dssp HHHHHHHHHHHHHTTCSSCEEEECCGGGTTCHHHHHH---HHHHHHHHHHHTTCCGGGEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEecccccCCHHHHHH---HHHHHHHHhhhhCCCCCcEEEEeCCCHHHHHHH
Confidence 4899999999999999999999999999999999998 789999999999999999999999999998753
No 11
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural genomics, PSI-2, protein structure initiative; 2.79A {Oleispira antarctica} SCOP: c.1.10.1
Probab=98.81 E-value=2.5e-10 Score=88.63 Aligned_cols=70 Identities=33% Similarity=0.418 Sum_probs=65.3
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
+|++.|+||.++++++|||||+|++++.+.+...+|. ...++++.|+..++.....+|+.+++|++++..
T Consensus 82 ~D~l~v~~g~ei~~~v~G~VS~EV~~~ls~d~e~~i~---eA~~l~~l~~~~gi~~~nv~IKIP~T~eGl~A~ 151 (329)
T 3m16_A 82 GDKLAVNIGCEVLTSIPGVISTEVDARLSFDTQATVA---KARKLIRLYQDAGIDSDRILIKIASTWEGIQAA 151 (329)
T ss_dssp HHHHHHHHHHHHHTTCSSCEEEECCGGGTTCHHHHHH---HHHHHHHHHHHTTCCGGGEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEECCcccCCHHHHHH---HHHHHHHhhhhhCCCCCcEEEEeCCCHHHHHHH
Confidence 5899999999999999999999999999999999988 788999999999999999999999999998754
No 12
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str}
Probab=98.80 E-value=3.1e-10 Score=88.25 Aligned_cols=70 Identities=37% Similarity=0.464 Sum_probs=65.2
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
+|++.|+||.++++++|||||+|++++.+.+...+|. ...++++.|+..++.....+|+.+++|++++..
T Consensus 78 ~D~l~v~~g~ei~~~v~G~VS~EV~~~ls~d~e~~i~---eA~~l~~l~~~~gi~~~nv~IKIP~T~eGl~A~ 147 (334)
T 3hjz_A 78 VDQVSVFFGKEILKIISGRVSTEVDARLSFDTEATVK---KARKLINLYKNFGIEKERILIKIAATWEGIKAA 147 (334)
T ss_dssp HHHHHHHHHHHHHTTCSSCEEEECCGGGTTCHHHHHH---HHHHHHHHHHHTTCCGGGEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEcCCccCCHHHHHH---HHHHHHHHhhhhCCCCCcEEEEeCCCHHHHHHH
Confidence 5899999999999999999999999999999999988 678999999999999999999999999997754
No 13
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae}
Probab=98.79 E-value=8.8e-10 Score=85.83 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=40.7
Q ss_pred eeccccHHHHHhhCCCCCCCChHHHHhhh-CchHHHHHHHHHHHhh
Q psy6604 37 VADTGDFEAMKKYKPTDATTNPSLILQAA-TMPQYQHLINKAVEFG 81 (85)
Q Consensus 37 vADTgd~~~I~~y~p~DaTTNPSLIl~Aa-~~~~y~~li~~a~~~~ 81 (85)
..||||++.+..|.|.|+||||||+.+|. +.+.|+++|++.++++
T Consensus 24 ~ldtgdl~~~~~~g~~GvTTNPsl~~kA~~~~~~y~~~i~~~~~~~ 69 (352)
T 3clm_A 24 LVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKRQN 69 (352)
T ss_dssp HHHTSHHHHHHTTTCCCEECCHHHHHHHHHHCTTHHHHHHHHTTSS
T ss_pred hccccCHHHHHhcCCCeEecCHHHHHHHHhcCCcHHHHHHHHHHhC
Confidence 68999999999999999999999999997 5589999999987544
No 14
>3tkf_A Transaldolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel/TIM barrel; HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB: 3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Probab=98.79 E-value=3.5e-10 Score=88.33 Aligned_cols=70 Identities=27% Similarity=0.422 Sum_probs=65.0
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
+|++.|+||.++++++|||||+|++++.+.+...+|. ...++++.|+..++.....+|+.+++|++++..
T Consensus 101 ~D~l~v~~g~ei~~~v~G~VS~EV~~~ls~d~e~~i~---eA~~l~~l~~~~gi~~~nv~IKIP~T~eGi~A~ 170 (345)
T 3tkf_A 101 AIEILVSFGIKILDVIEGKVSSEVDARVSFNSATTID---YAKRIIARYESNGIPKDRVLIMIAATWEGIKAA 170 (345)
T ss_dssp HHHHHHHHHHHHHTTCSSCEEEECCGGGTTCHHHHHH---HHHHHHHHHHHTTCCGGGEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEcCCccCCHHHHHH---HHHHHHHHhhhcCCCCCcEEEEeCCCHHHHHHH
Confidence 5899999999999999999999999999999999888 678899999999999989999999999998754
No 15
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Probab=98.13 E-value=1.3e-06 Score=64.11 Aligned_cols=42 Identities=29% Similarity=0.346 Sum_probs=34.6
Q ss_pred eeeccccHHHHHhhCCC----CCCCChHHHHhhhCchHHHHHHHHHHH
Q psy6604 36 VVADTGDFEAMKKYKPT----DATTNPSLILQAATMPQYQHLINKAVE 79 (85)
Q Consensus 36 VvADTgd~~~I~~y~p~----DaTTNPSLIl~Aa~~~~y~~li~~a~~ 79 (85)
+.+||+|++.|+++.|. |+||||||+.++. ..|.+.+.+..+
T Consensus 3 ~~~Dtad~~~i~~~~~~g~i~GvTTNPsii~k~~--~~~~~~i~ei~~ 48 (220)
T 1l6w_A 3 LYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGK--KPLDVVLPQLHE 48 (220)
T ss_dssp EEEECCCHHHHHHHHTTSCCCEEECCHHHHHHHC--SCHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhcCCcCceeeCHHHHHhcC--CCHHHHHHHHHH
Confidence 67899999999999885 8999999999963 347777766543
No 16
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1
Probab=98.10 E-value=8.1e-07 Score=65.24 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=27.3
Q ss_pred eeeccccHHHHHhhCCC----CCCCChHHHHhhh
Q psy6604 36 VVADTGDFEAMKKYKPT----DATTNPSLILQAA 65 (85)
Q Consensus 36 VvADTgd~~~I~~y~p~----DaTTNPSLIl~Aa 65 (85)
+++||+|++.|++|.|. |+||||||+.++.
T Consensus 3 ~~~Dtad~~~i~~~~~~g~i~GvTTNPsli~ka~ 36 (223)
T 1wx0_A 3 LYLDTASLEEIREIAAWGVLSGVTTNPTLVAKAF 36 (223)
T ss_dssp EEEECCCHHHHHHHHHHTCCCEEECCHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHhcCCcCceecCHHHHHhcC
Confidence 67999999999999874 8999999999984
No 17
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae}
Probab=97.49 E-value=8.9e-06 Score=63.27 Aligned_cols=62 Identities=21% Similarity=0.065 Sum_probs=44.4
Q ss_pred hhHHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 2 DKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 2 dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
|.+.+.| ++++.+|||||+|++++.+.+...+|. ...++++. +.....+|+.++||++++..
T Consensus 89 d~l~~~~--e~~~~v~G~VS~EVdprla~D~e~~i~---eA~~L~~~-----i~r~nv~IKIPaT~eGi~A~ 150 (352)
T 3clm_A 89 DVCLAEH--ESTGGKTGFVSLEVSPELAKDAQGTVE---EARRLHAA-----IARKNAMIKVPATDAGIDAL 150 (352)
T ss_dssp HHHHHHH--HHTTSSSCCEEEECCGGGTTCHHHHHH---HHHHHHHH-----HCCTTEEEEEECSHHHHHHH
T ss_pred HHHHHHH--HhcCCCCeeEEEEeccccCCCHHHHHH---HHHHHHHh-----cCCCCEEEEeCCCHHHHHHH
Confidence 4455555 667889999999999999988888776 45555555 22334677777777776653
No 18
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold, transferase; 2.10A {Corynebacterium glutamicum}
Probab=97.31 E-value=1.9e-05 Score=62.16 Aligned_cols=35 Identities=31% Similarity=0.347 Sum_probs=29.4
Q ss_pred ChhHHHhHchhhhhcCCCccccccccccccccceeee
Q psy6604 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVV 37 (85)
Q Consensus 1 ~dk~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~Vv 37 (85)
+|++.|+| ++++.++|+||+|++++.+.+...+|.
T Consensus 88 ~D~L~~~~--e~~~~~~G~VS~EV~prla~d~e~mi~ 122 (360)
T 3r5e_A 88 CDLFTGIF--ESSNGYDGRVSIEVDPRISADRDATLA 122 (360)
T ss_dssp HHHTHHHH--HHTTTSSSEEEEECCGGGTTCHHHHHH
T ss_pred HHHHHHHH--HhcCCCCccEEEEecccccCCHHHHHH
Confidence 48899999 899999999999999887776655554
No 19
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=97.07 E-value=0.00017 Score=53.32 Aligned_cols=42 Identities=24% Similarity=0.474 Sum_probs=31.5
Q ss_pred eeeccccHHHHHhhCC----CCCCCChHHHHhh---hCchHHHHHHHHHHH
Q psy6604 36 VVADTGDFEAMKKYKP----TDATTNPSLILQA---ATMPQYQHLINKAVE 79 (85)
Q Consensus 36 VvADTgd~~~I~~y~p----~DaTTNPSLIl~A---a~~~~y~~li~~a~~ 79 (85)
+-.||.|++.|+++.+ .++||||||+.++ .. .|.+++.+..+
T Consensus 3 ~flDtAn~~ei~~~~~~g~i~GVTTNPsli~k~~~~g~--~~~~~~~ei~~ 51 (223)
T 3s1x_A 3 IFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGK--KYGDIIREILK 51 (223)
T ss_dssp EEEECCCHHHHHHHHHHTCCCEEECCHHHHHHHSCTTC--CHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHhcCCcccccCCHHHHHhhhccCC--CHHHHHHHHHH
Confidence 3469999999998876 5689999999999 53 45556555443
No 20
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1
Probab=97.00 E-value=0.00012 Score=54.04 Aligned_cols=47 Identities=23% Similarity=0.360 Sum_probs=27.3
Q ss_pred cccceeeeeccccHHHHHhhC---C-CCCCCChHHHHhhhCchHHHHHHHHHH
Q psy6604 30 LKDYTVVVADTGDFEAMKKYK---P-TDATTNPSLILQAATMPQYQHLINKAV 78 (85)
Q Consensus 30 Lk~~T~VvADTgd~~~I~~y~---p-~DaTTNPSLIl~Aa~~~~y~~li~~a~ 78 (85)
-..||-+-.||++++.|+++. + .++||||||+.++. ..|.+.+.+..
T Consensus 9 ~~~~~~~flDta~~~ei~~~~~~g~i~GvTTNPsi~~k~g--~~~~~~i~ei~ 59 (230)
T 1vpx_A 9 HHHHMKIFLDTANLEEIKKGVEWGIVDGVTTNPTLISKEG--AEFKQRVKEIC 59 (230)
T ss_dssp --CCCEEEEECCCHHHHHHHHHTTCCCEEECCC-------------CHHHHHH
T ss_pred cccceEEEEcCCCHHHHHHHHhcCCcCCCccCHHHHHhcC--CCHHHHHHHHH
Confidence 345788999999999999875 4 57999999999953 34666666543
No 21
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=96.84 E-value=0.00047 Score=50.53 Aligned_cols=41 Identities=20% Similarity=0.433 Sum_probs=31.2
Q ss_pred eeeccccHHHHHhhCC----CCCCCChHHHHhh-hCchHHHHHHHHHH
Q psy6604 36 VVADTGDFEAMKKYKP----TDATTNPSLILQA-ATMPQYQHLINKAV 78 (85)
Q Consensus 36 VvADTgd~~~I~~y~p----~DaTTNPSLIl~A-a~~~~y~~li~~a~ 78 (85)
+-.||.|++.|+++.+ .++||||||+.++ .. .|...+.+..
T Consensus 3 ~flDtAn~~ei~~~~~~g~i~GVTTNPsli~k~~g~--~~~~~~~eI~ 48 (212)
T 3r8r_A 3 FFVDTANIDEIREANELGILAGVTTNPSLVAKEANV--SFHDRLREIT 48 (212)
T ss_dssp EEEECCCHHHHHHHHHTTCEEEEECCHHHHHTSCSS--CHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHhcCCcccccCCHHHHHHccCC--CHHHHHHHHH
Confidence 3469999999999887 5579999999999 43 3555555544
No 22
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1
Probab=96.72 E-value=0.00012 Score=53.61 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=44.1
Q ss_pred HHHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 4 LVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 4 ~~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
-...++.++++++|||||+|++ +.+...+|. ...++++.| ...+|+.+++|++++..
T Consensus 47 ~~~~~~~~i~~~v~G~VS~EV~---a~d~e~~i~---eA~~l~~~~-------~nv~IKIP~T~eGl~A~ 103 (223)
T 1wx0_A 47 AFAAHLRAICETVGGPVSAEVT---ALEAEAMVA---EGRRLAAIH-------PNIVVKLPTTEEGLKAC 103 (223)
T ss_dssp HHHHHHHHHHHHHTSCEEEECC---CSSHHHHHH---HHHHHHHHC-------TTEEEEEESSHHHHHHH
T ss_pred CHHHHHHHHHhccCCcEEEEEe---cCCHHHHHH---HHHHHHhhC-------CCEEEEeCCCHHHHHHH
Confidence 3567899999999999999998 556666665 566667766 24888999999887654
No 23
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=94.40 E-value=0.0042 Score=45.79 Aligned_cols=55 Identities=22% Similarity=0.065 Sum_probs=35.8
Q ss_pred HHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHH
Q psy6604 5 VILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQH 72 (85)
Q Consensus 5 ~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~ 72 (85)
+..+..+|+++|||+||+|+++ .+...+|. -..++.+.+ ...+|+.+++|++++.
T Consensus 42 ~~~~~~ei~~~v~G~Vs~EV~a---~d~e~mi~---eA~~L~~~~-------~nv~IKIP~T~eGl~A 96 (223)
T 3s1x_A 42 YGDIIREILKIVDGPVSVEVVS---TKYEGMVE---EARKIHGLG-------DNAVVKIPMTEDGLRA 96 (223)
T ss_dssp HHHHHHHHHHHCSSCEEEECCC---CSHHHHHH---HHHHHHHTC-------TTEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEcc---CCHHHHHH---HHHHHHHhC-------CCEEEEeCCCHHHHHH
Confidence 4577889999999999999875 33333332 223333333 2467777788777654
No 24
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=94.00 E-value=0.0049 Score=45.06 Aligned_cols=55 Identities=22% Similarity=0.124 Sum_probs=34.2
Q ss_pred HHhHchhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHH
Q psy6604 5 VILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQH 72 (85)
Q Consensus 5 ~v~~g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~ 72 (85)
+..+..+|+++|+|+||+|+ .+.+...+|. -..++.+.+ ...+|+.+++|++++.
T Consensus 40 ~~~~~~eI~~~v~G~Vs~EV---~a~d~e~mi~---ea~~l~~~~-------~nv~IKIP~T~eGl~A 94 (212)
T 3r8r_A 40 FHDRLREITDVVKGSVSAEV---ISLKAEEMIE---EGKELAKIA-------PNITVKIPMTSDGLKA 94 (212)
T ss_dssp HHHHHHHHHHHCCSCEEEEC---CCSSHHHHHH---HHHHHHTTC-------TTEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEE---ecCCHHHHHH---HHHHHHHhC-------CCEEEEeCCCHHHHHH
Confidence 46788999999999999998 2333333332 122222222 2467777777777643
No 25
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Probab=93.48 E-value=0.0068 Score=44.27 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=38.1
Q ss_pred hhhhhcCCCc--cccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHHH
Q psy6604 10 TEILNIIPGR--VSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHL 73 (85)
Q Consensus 10 ~~~l~~v~Gr--vsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~l 73 (85)
.+++++++|+ ||+|++ +.+...+|. -..++.+.| ...+|+.+++|++++..
T Consensus 44 ~ei~~~v~G~~~VS~EV~---a~d~e~mi~---eA~~l~~~~-------~nv~IKIP~T~eGl~A~ 96 (220)
T 1l6w_A 44 PQLHEAMGGQGRLFAQVM---ATTAEGMVN---DALKLRSII-------ADIVVKVPVTAEGLAAI 96 (220)
T ss_dssp HHHHHHTTTCSEEEEECC---CSSHHHHHH---HHHHHHHHS-------TTCEEEEECSHHHHHHH
T ss_pred HHHHHhcCCCceEEEEEc---cCCHHHHHH---HHHHHHHhC-------CCEEEEeCCCHHHHHHH
Confidence 6789999999 999998 555555665 456666666 24888999998887653
No 26
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1
Probab=93.25 E-value=0.0056 Score=45.15 Aligned_cols=51 Identities=24% Similarity=0.126 Sum_probs=31.5
Q ss_pred chhhhhcCCCccccccccccccccceeeeeccccHHHHHhhCCCCCCCChHHHHhhhCchHHHH
Q psy6604 9 GTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQH 72 (85)
Q Consensus 9 g~~~l~~v~GrvsTem~~L~~Lk~~T~VvADTgd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~ 72 (85)
-.+|+++++|+||.|++ +.+...+|. -..++.+.+ ...+|+.+++|++++.
T Consensus 55 i~ei~~iv~G~VS~EV~---a~d~e~mi~---eA~~L~~~~-------~nv~IKIP~T~eGl~A 105 (230)
T 1vpx_A 55 VKEICDLVKGPVSAEVV---SLDYEGMVR---EARELAQIS-------EYVVIKIPMTPDGIKA 105 (230)
T ss_dssp HHHHHHHHCSCEEEECS---CCSHHHHHH---HHHHHHTTC-------TTEEEEEESSHHHHHH
T ss_pred HHHHHhccCCcEEEEEc---cCCHHHHHH---HHHHHHHhC-------CCEEEEeCCCHHHHHH
Confidence 35789999999999997 334444443 233333333 2366677777766554
No 27
>2okr_C MAP kinase-activated protein kinase 2; NLS, NES, heterodimer, docking groove, transferase; 2.00A {Homo sapiens}
Probab=29.89 E-value=29 Score=17.56 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=11.5
Q ss_pred hCCCCCCCChHHHH
Q psy6604 49 YKPTDATTNPSLIL 62 (85)
Q Consensus 49 y~p~DaTTNPSLIl 62 (85)
.++.+..+||+|..
T Consensus 3 iK~L~~snNpLL~k 16 (26)
T 2okr_C 3 IKKIEDASNPLLLK 16 (26)
T ss_dssp CCCTTTCCCHHHHH
T ss_pred ccccccccCHHHHH
Confidence 46778999999975
No 28
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=23.55 E-value=96 Score=21.05 Aligned_cols=59 Identities=8% Similarity=0.124 Sum_probs=46.4
Q ss_pred ccccccceeee-e-cc----ccHHHHHhhCCCCCCCChHHHHhhhCchHHHHHHHHHHHhhhhcC
Q psy6604 27 SLKLKDYTVVV-A-DT----GDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85 (85)
Q Consensus 27 L~~Lk~~T~Vv-A-DT----gd~~~I~~y~p~DaTTNPSLIl~Aa~~~~y~~li~~a~~~~~~~~ 85 (85)
+.+|++...-+ - |- ..+..+..+.|.-+-=+++++....+.+..+.++...++.|+..|
T Consensus 145 l~~l~~~G~~ialDdfG~g~ssl~~L~~l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g 209 (259)
T 3s83_A 145 LKTLRDAGAGLALDDFGTGFSSLSYLTRLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLD 209 (259)
T ss_dssp HHHHHHHTCEEEEECC---CHHHHHHHHSCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCEEEEECCCCCchhHHHHHhCCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCC
Confidence 55677765433 2 22 357888999998888999999999999999999999999887653
No 29
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=20.33 E-value=42 Score=21.99 Aligned_cols=11 Identities=9% Similarity=0.247 Sum_probs=8.5
Q ss_pred HHHHHhhhhcC
Q psy6604 75 NKAVEFGKQNG 85 (85)
Q Consensus 75 ~~a~~~~~~~~ 85 (85)
++||+||+++|
T Consensus 70 E~AiayAek~G 80 (108)
T 2lju_A 70 ELAIAYAVAHK 80 (108)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 57888888775
Done!