RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6604
(85 letters)
>gnl|CDD|235381 PRK05269, PRK05269, transaldolase B; Provisional.
Length = 318
Score = 107 bits (271), Expect = 3e-30
Identities = 36/56 (64%), Positives = 44/56 (78%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
LK +T VVADTGD EA+KKY+P DATTNPSLIL+AA +P+Y LI+ AV + KQ
Sbjct: 8 LKQFTTVVADTGDIEAIKKYQPQDATTNPSLILKAAQIPEYAPLIDDAVAWAKQQS 63
Score = 58.6 bits (143), Expect = 7e-12
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDASL 28
+DKL + FG EIL +IPGRVSTEVDA L
Sbjct: 74 IDKLAVNFGLEILKLIPGRVSTEVDARL 101
>gnl|CDD|240406 PTZ00411, PTZ00411, transaldolase-like protein; Provisional.
Length = 333
Score = 99.0 bits (247), Expect = 9e-27
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84
LK++T VVADTGDF +KK++P DATTNPSL+L AA MP+Y HLI+ A+++ K N
Sbjct: 8 LKEHTTVVADTGDFSLLKKFQPEDATTNPSLVLAAAQMPEYAHLIDDAIKYAKAN 62
Score = 48.2 bits (115), Expect = 4e-08
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASL 28
DKL + FG EIL I+PGRVSTEVDA L
Sbjct: 85 DKLTVNFGVEILKIVPGRVSTEVDARL 111
>gnl|CDD|183458 PRK12346, PRK12346, transaldolase A; Provisional.
Length = 316
Score = 97.9 bits (244), Expect = 2e-26
Identities = 33/56 (58%), Positives = 46/56 (82%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
+K +T VVAD+GD E+++ Y P DATTNPSL+L+AA +PQYQHLI+ A+ +GK+ G
Sbjct: 7 IKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGLPQYQHLIDDAIAWGKKQG 62
Score = 52.8 bits (127), Expect = 8e-10
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASL 28
DKL + FG EIL +PGRVSTEVDA L
Sbjct: 74 DKLAVNFGAEILKSVPGRVSTEVDARL 100
>gnl|CDD|162081 TIGR00874, talAB, transaldolase. This family includes the
majority of known and predicted transaldolase
sequences, including E. coli TalA and TalB. It excluded
two other families. The first includes E. coli
transaldolase-like protein TalC. The second family
includes the putative transaldolases of Helicobacter
pylori and Mycobacterium tuberculosis [Energy
metabolism, Pentose phosphate pathway].
Length = 317
Score = 94.8 bits (236), Expect = 3e-25
Identities = 38/56 (67%), Positives = 47/56 (83%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
LK +TVVVADTGD EA+KKY+P DATTNPSLIL AA +P+Y LI++AV +GK+ G
Sbjct: 6 LKQFTVVVADTGDIEAIKKYQPQDATTNPSLILAAAQLPKYAELIDEAVAWGKKQG 61
Score = 49.4 bits (118), Expect = 1e-08
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDASL 28
+DKL + FG EIL I+PGRVSTEVDA L
Sbjct: 72 LDKLAVNFGLEILKIVPGRVSTEVDARL 99
>gnl|CDD|188644 cd00957, Transaldolase_TalAB, Transaldolases including both TalA
and TalB. Transaldolases including both TalA and TalB.
The enzyme catalyses the reversible transfer of a
dyhydroxyacetone moiety, derived from
fructose-6-phosphate to erythrose-4-phosphate yielding
sedoheptulose-7-phosphate and
glyceraldehyde-3-phosphate. The catalytic mechanism is
similar to other class I aldolases. The enzyme is found
in the non-oxidative branch of the pentose phosphate
pathway and forms a dimer in solution.
Length = 313
Score = 94.6 bits (236), Expect = 4e-25
Identities = 34/56 (60%), Positives = 46/56 (82%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
LK +T +VADTGDFEA+KK+KP DATTNPSLIL AA +P+Y L+++A+ + K+ G
Sbjct: 6 LKKFTTIVADTGDFEAIKKFKPQDATTNPSLILAAAKLPEYNKLVDEAIAYAKKKG 61
Score = 53.8 bits (130), Expect = 3e-10
Identities = 21/28 (75%), Positives = 25/28 (89%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDASL 28
+DKL++ FGTEIL +IPGRVSTEVDA L
Sbjct: 72 LDKLLVNFGTEILKLIPGRVSTEVDARL 99
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 79.8 bits (197), Expect = 2e-19
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 29 KLKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQ 83
+L+ TVVVADTGD +A++K+ P DATTNPSLI AA MPQYQ ++++ + ++
Sbjct: 8 QLRQMTVVVADTGDIQAIEKFTPRDATTNPSLITAAAQMPQYQSIVDETLRQARK 62
Score = 48.6 bits (116), Expect = 3e-08
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDASL 28
D+L + FG +IL I+PGRVSTEVDA L
Sbjct: 78 FDRLAVAFGLKILKIVPGRVSTEVDARL 105
>gnl|CDD|223254 COG0176, MipB, Transaldolase [Carbohydrate transport and
metabolism].
Length = 239
Score = 51.5 bits (124), Expect = 2e-09
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPT----DATTNPSLILQAATMPQYQHLINKAVEFGKQ 83
L + + DT D E +KK P TTNPSLIL+A P AVEFGK+
Sbjct: 4 LSQWMELFLDTADIEEIKKLLPIGPVDGVTTNPSLILKAGAKP------RDAVEFGKE 55
Score = 28.8 bits (65), Expect = 0.21
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 12/46 (26%)
Query: 1 MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVVVADTGDFEAM 46
+ + FG EIL I+PGRV TEVD V++ D EAM
Sbjct: 45 KPRDAVEFGKEILKIVPGRV-TEVDE---------VLSF--DAEAM 78
>gnl|CDD|216195 pfam00923, Transaldolase, Transaldolase.
Length = 244
Score = 50.7 bits (122), Expect = 4e-09
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 36 VVADTGDFEAMKKYKP----TDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
+ DT D E +KK TTNPS+ L+A +Y L ++A+ K+ G
Sbjct: 1 IWLDTADRELIKKLIEEGPIDGVTTNPSIFLKAI---EYSALYDEAIAEIKEIG 51
Score = 34.1 bits (79), Expect = 0.003
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 4 LVILFGTEILNIIPGRVSTEVDASL 28
+ G EIL I GRVS EVD L
Sbjct: 59 EELRPGYEILKGIDGRVSLEVDPRL 83
>gnl|CDD|188631 cd00439, Transaldolase, Transaldolase. Transaldolase. Enzymes
found in the non-oxidative branch of the pentose
phosphate pathway, that catalyze the reversible
transfer of a dihydroxyacetone group from
fructose-6-phosphate to erythrose-4-phosphate yielding
sedoheptulose-7-phosphate and
glyceraldehyde-3-phosphate. They are members of the
class I aldolases, who are characterized by using a
Schiff-base mechanism for stabilization of the reaction
intermediates.
Length = 252
Score = 45.8 bits (108), Expect = 2e-07
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 36 VVADTGDFEAMKKYK----PTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
DT D A TTNPS+I A + + + + ++
Sbjct: 2 PWYDTLDRPATDLLPLIRGVRGVTTNPSIIQAAISTSNAYNDQFRTLVESGKDI 55
Score = 27.3 bits (60), Expect = 0.74
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 2 DKLVILFGTEILNII--PGRVSTEVDASL 28
+ I + GRVS EV A L
Sbjct: 67 IQDACKLFEPIYDQTEADGRVSVEVSARL 95
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like
fructose-6-phosphate aldolases (FSA) found in bacteria
and archaea. Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea, which
are member of the MipB/TalC subfamily of class I
aldolases. FSA catalyze an aldol cleavage of fructose
6-phosphate and do not utilize fructose, fructose
1-phosphate, fructose 1,6-phosphate, or
dihydroxyacetone phosphate. The enzymes belong to the
transaldolase family that serves in transfer reactions
in the pentose phosphate cycle, and are more distantly
related to fructose 1,6-bisphosphate aldolase.
Length = 211
Score = 32.9 bits (76), Expect = 0.008
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 39 DTGDFEAMKKYKPT----DATTNPSLILQAATMPQYQHL 73
DT D E +KK T TTNPSLI ++ + L
Sbjct: 5 DTADLEEIKKASETGLLDGVTTNPSLIAKSGRIDFEAVL 43
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 27.6 bits (62), Expect = 0.72
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 30 LKDYTVVVADTGDFEAM----KKYKPTDATTNPSLILQAATMPQYQ 71
L TV++ D E +KYK T P + + A P
Sbjct: 213 LCGATVIIMPKFDSETFLKLIEKYKVTSLFLVPPIAVALAKSPLVD 258
>gnl|CDD|100089 cd03087, PGM_like1, This archaeal PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily
which includes several related enzymes that catalyze a
reversible intramolecular phosphoryl transfer on their
sugar substrates. The alpha-D-phosphohexomutases include
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Members of this superfamily include the
phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 439
Score = 27.2 bits (61), Expect = 0.94
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 2 DKLVILFGTEILNIIPGRVSTEVDASLKLKDY 33
DKL+ L +L G+V T VDAS+ ++D
Sbjct: 252 DKLLALLAKYLLEEGGGKVVTPVDASMLVEDV 283
>gnl|CDD|240409 PTZ00416, PTZ00416, elongation factor 2; Provisional.
Length = 836
Score = 26.5 bits (59), Expect = 1.8
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 12 ILNII--PGRV--STEVDASLKLKDYTVVVADT 40
++N+I PG V S+EV A+L++ D +VV D
Sbjct: 93 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDC 125
>gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit;
Provisional.
Length = 843
Score = 26.2 bits (58), Expect = 2.5
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 12 ILNII--PGRV--STEVDASLKLKDYTVVVADT 40
++N+I PG V S+EV A+L++ D +VV D
Sbjct: 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDC 131
>gnl|CDD|206672 cd01885, EF2, Elongation Factor 2 (EF2) in archaea and eukarya.
Translocation requires hydrolysis of a molecule of GTP
and is mediated by EF-G in bacteria and by eEF2 in
eukaryotes. The eukaryotic elongation factor eEF2 is a
GTPase involved in the translocation of the
peptidyl-tRNA from the A site to the P site on the
ribosome. The 95-kDa protein is highly conserved, with
60% amino acid sequence identity between the human and
yeast proteins. Two major mechanisms are known to
regulate protein elongation and both involve eEF2.
First, eEF2 can be modulated by reversible
phosphorylation. Increased levels of phosphorylated eEF2
reduce elongation rates presumably because
phosphorylated eEF2 fails to bind the ribosomes.
Treatment of mammalian cells with agents that raise the
cytoplasmic Ca2+ and cAMP levels reduce elongation rates
by activating the kinase responsible for phosphorylating
eEF2. In contrast, treatment of cells with insulin
increases elongation rates by promoting eEF2
dephosphorylation. Second, the protein can be
post-translationally modified by ADP-ribosylation.
Various bacterial toxins perform this reaction after
modification of a specific histidine residue to
diphthamide, but there is evidence for endogenous ADP
ribosylase activity. Similar to the bacterial toxins, it
is presumed that modification by the endogenous enzyme
also inhibits eEF2 activity.
Length = 218
Score = 26.0 bits (58), Expect = 2.5
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
Query: 12 ILNII--PGRV--STEVDASLKLKDYTVVVAD 39
++N+I PG V S+EV A+L+L D +VV D
Sbjct: 73 LINLIDSPGHVDFSSEVTAALRLTDGALVVVD 104
>gnl|CDD|172383 PRK13862, PRK13862, putative crown gall tumor protein VirC2;
Provisional.
Length = 201
Score = 25.6 bits (56), Expect = 2.9
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATM 67
L D+ ++AD G F + P TT S+I+Q + M
Sbjct: 120 LDDFENMLAD-GSFSTAPQSYPIPHTTEKSIIVQTSRM 156
>gnl|CDD|131189 TIGR02134, transald_staph, transaldolase. This small family of
proteins is a member of the transaldolase sybfamily
represented by pfam00923. Coxiella and Staphylococcus
lack members of the known transaldolase equivalog
families and appear to require a transaldolase activity
for completion of the pentose phosphate pathway [Energy
metabolism, Pentose phosphate pathway].
Length = 236
Score = 25.2 bits (55), Expect = 4.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 36 VVADTGDFEAMKKYKPTDA----TTNPSLILQA 64
V AD + E M K+ TTNPSL+ +A
Sbjct: 8 VFADGANLEEMVKFSTHPYVKGFTTNPSLMRKA 40
>gnl|CDD|235212 PRK04043, tolB, translocation protein TolB; Provisional.
Length = 419
Score = 25.0 bits (55), Expect = 5.7
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 21 STEVDASLKLKDYTVVVAD---TGDFEAMKKYKPTD 53
S DA+LK K + ++V D + FE + +
Sbjct: 39 SDLNDANLKKKFFKILVNDLKVSSHFEVSENKDQSS 74
>gnl|CDD|225564 COG3019, COG3019, Predicted metal-binding protein [General
function prediction only].
Length = 149
Score = 24.7 bits (54), Expect = 6.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 28 LKLKDYTVVVADTGDFEAMKK 48
+K + V V +T DF A+K+
Sbjct: 46 MKANGFEVKVVETDDFLALKR 66
>gnl|CDD|153086 cd01677, PFL2_DhaB_BssA, Pyruvate formate lyase 2 and related
enzymes. This family includes pyruvate formate lyase 2
(PFL2), B12-independent glycerol dehydratase (DhaB) and
the alpha subunit of benzylsuccinate synthase (BssA),
all of which have a highly conserved ten-stranded
alpha/beta barrel domain, which is similar to those of
PFL1 (pyruvate formate lyase 1) and RNR (ribonucleotide
reductase). Pyruvate formate lyase catalyzes a key step
in anaerobic glycolysis, the conversion of pyruvate and
CoenzymeA to formate and acetylCoA. DhaB catalyzes the
first step in the conversion of glycerol to
1,3-propanediol while BssA catalyzes the first step in
the anaerobic mineralization of both toluene and
m-xylene.
Length = 781
Score = 24.5 bits (54), Expect = 7.6
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 36 VVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVE 79
V +TGD K ++ L A Q +H I +V
Sbjct: 467 VGPETGDATDFKTFEE----------LWEAFKKQLRHFIKLSVR 500
>gnl|CDD|183481 PRK12376, PRK12376, putative translaldolase; Provisional.
Length = 236
Score = 24.5 bits (54), Expect = 7.6
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 30 LKDYTV-VVADTGDFEAMKKYKPTDA----TTNPSLILQA 64
+ V + AD D E M TTNPSL+ +A
Sbjct: 1 MAKLNVKIFADGADLEEMLAAYKNPLVKGFTTNPSLMRKA 40
>gnl|CDD|236500 PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.
Length = 891
Score = 24.7 bits (55), Expect = 7.7
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 18/50 (36%)
Query: 23 EVDASLKLKDYTVVV------ADTGDF------EAMKKYKPTDATTNPSL 60
EVDA VVV AD G+ EA+KKY NP
Sbjct: 847 EVDA------EYVVVAALKALADEGEIDASVVAEAIKKYGIDPDKANPRT 890
>gnl|CDD|181598 PRK08965, PRK08965, putative monovalent cation/H+ antiporter
subunit E; Reviewed.
Length = 162
Score = 24.4 bits (54), Expect = 9.2
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 4 LVILFGTEILNIIPGRVSTEVDAS 27
L + I+ + PG V E+
Sbjct: 105 LALTLLANIITLTPGTVVVEISRD 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.367
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,192,693
Number of extensions: 328203
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 38
Length of query: 85
Length of database: 10,937,602
Length adjustment: 53
Effective length of query: 32
Effective length of database: 8,586,840
Effective search space: 274778880
Effective search space used: 274778880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)