RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6604
         (85 letters)



>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId:
          562]}
          Length = 316

 Score = 92.9 bits (230), Expect = 3e-25
 Identities = 35/56 (62%), Positives = 42/56 (75%)

Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
          L+ YT VVADTGD  AMK Y+P DATTNPSLIL AA +P+Y+ LI+ AV + KQ  
Sbjct: 7  LRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQS 62



 Score = 32.0 bits (72), Expect = 0.004
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 1   MDKLVILFGTEILNIIPGRVSTEVDASLK 29
            DKL +  G EIL ++PGR+STEVDA L 
Sbjct: 73  TDKLAVNIGLEILKLVPGRISTEVDARLS 101


>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 319

 Score = 90.2 bits (223), Expect = 5e-24
 Identities = 36/56 (64%), Positives = 44/56 (78%)

Query: 30 LKDYTVVVADTGDFEAMKKYKPTDATTNPSLILQAATMPQYQHLINKAVEFGKQNG 85
          LK +T VVADTGDF A+ +YKP DATTNPSLIL AA MP YQ L+ +A+ +GK+ G
Sbjct: 6  LKQFTTVVADTGDFNAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAIAYGKKLG 61



 Score = 34.7 bits (79), Expect = 4e-04
 Identities = 22/36 (61%), Positives = 25/36 (69%)

Query: 1   MDKLVILFGTEILNIIPGRVSTEVDASLKLKDYTVV 36
           +DKL +LFG EIL  IPGRVSTEVDA L      +V
Sbjct: 72  IDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMV 107


>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
          aldolase/transaldolase {Thermus thermophilus [TaxId:
          274]}
          Length = 211

 Score = 41.3 bits (96), Expect = 2e-06
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 4/50 (8%)

Query: 38 ADTGDFEAMKKYKPT----DATTNPSLILQAATMPQYQHLINKAVEFGKQ 83
           DT   E +++          TTNP+L+ +A                 + 
Sbjct: 5  LDTASLEEIREIAAWGVLSGVTTNPTLVAKAFAAKGEALTEEAFAAHLRA 54


>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
          aldolase/transaldolase {Escherichia coli [TaxId: 562]}
          Length = 220

 Score = 38.6 bits (89), Expect = 2e-05
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 38 ADTGDFEAMKKYKPT----DATTNPSLILQAATMPQYQHLINKAVEFGKQ 83
           DT D  A+K           TTNPS+I  A   P    L       G Q
Sbjct: 5  LDTSDVVAVKALSRIFPLAGVTTNPSIIA-AGKKPLDVVLPQLHEAMGGQ 53


>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate
          aldolase/transaldolase {Thermotoga maritima [TaxId:
          2336]}
          Length = 218

 Score = 37.4 bits (86), Expect = 6e-05
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 38 ADTGDFEAMKKYKPT----DATTNPSLILQAA 65
           DT + E +KK          TTNP+LI +  
Sbjct: 7  LDTANLEEIKKGVEWGIVDGVTTNPTLISKEG 38


>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
           fungus (Peniophora sp. SG) [TaxId: 204723]}
          Length = 379

 Score = 29.2 bits (64), Expect = 0.045
 Identities = 9/76 (11%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 2   DKLVILFGTEILNIIPGRVSTEVDASLKLKDY-TVVVADTGDFEAMKKYKPTDATTNPSL 60
            +L+   G+  +       +  V+   ++  +  + +   G+        PT    NP+L
Sbjct: 304 PELLPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNI-------PTAYGANPTL 356

Query: 61  ILQAATMPQYQHLINK 76
              +  +   +++   
Sbjct: 357 TAMSLAIKSCEYIKQN 372


>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 23.9 bits (51), Expect = 2.7
 Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 42  DFEAMKKY----KPTDATTNPSLILQAATMPQYQHLINKAVEFGKQN 84
            F  +  +    +      N   ++  A   Q +H+++   +F K +
Sbjct: 76  GFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 122


>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas
          mobilis [TaxId: 542]}
          Length = 204

 Score = 23.3 bits (49), Expect = 4.9
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 15 IIPGRVSTEVDASLKLKDYTVVVADTGDF 43
          ++   ++ +V+A   L   T V+A+TGD 
Sbjct: 3  LVNAEIARQVEA--LLTPNTTVIAETGDS 29


>d3dbya1 a.29.13.1 (A:5-125) Uncharacterized protein
          BCE_G9241_0798 {Bacillus cereus [TaxId: 1396]}
          Length = 121

 Score = 22.8 bits (49), Expect = 5.3
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 59 SLILQAATMPQYQHLINKAVEFGKQ 83
          +  L  A  P+ +  I KA  F + 
Sbjct: 21 AQFLLDALAPKEKEDIKKATYFVET 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0661    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 290,145
Number of extensions: 10958
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 14
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)