BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6612
(291 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 18/227 (7%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
+V V K+IG +LKG++ + E +I+GL+GP+G GKTT L I +G + +
Sbjct: 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74
Query: 79 SFRQISD--------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET---RSKEIL 127
+ + + I Y+P+E + + E R+ + + +IE R+ EI
Sbjct: 75 FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA 134
Query: 128 KLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L E K V S G R++ A +L+ NP+L ILDEPT GLD + ++ + LK+
Sbjct: 135 GLGE--KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192
Query: 188 ALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ G TI++++H + E + I L+ + G +V VE L E
Sbjct: 193 SQEGLTILVSSHNMLEVEFLCDRIALIHN----GTIVETGTVEELKE 235
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 28/218 (12%)
Query: 22 VTSAYKKIGNHVV--LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
VT YK +G ++ LK +NLN+ E + ++GPSG GK+T+LN I + G + +
Sbjct: 7 VTKTYK-MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID 65
Query: 80 FRQISD-------------IGYMPQELALHGELSIRET------FRYYGYMFDMTDDQIE 120
+ +D IG++ Q+ L L+ E F+Y G M + ++
Sbjct: 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM---SGEERR 122
Query: 121 TRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
R+ E LK+ EL A LSGGQQ+R++ A +L +NP +++ D+PT LD +
Sbjct: 123 KRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182
Query: 179 IIWDRLKEM-ALNGKTIIITTHYIEEAKGAHNIGLMRD 215
I LK++ +GKT+++ TH I A+ I ++D
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD 220
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 28/218 (12%)
Query: 22 VTSAYKKIGNHVV--LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
VT YK +G ++ LK +NLN+ E + ++GPSG GK+T+LN I + G + +
Sbjct: 7 VTKTYK-MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID 65
Query: 80 FRQISD-------------IGYMPQELALHGELSIRET------FRYYGYMFDMTDDQIE 120
+ +D IG++ Q+ L L+ E F+Y G M + ++
Sbjct: 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM---SGEERR 122
Query: 121 TRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
R+ E LK+ EL A LSGGQQ+R++ A +L +NP +++ D+PT LD +
Sbjct: 123 KRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGE 182
Query: 179 IIWDRLKEM-ALNGKTIIITTHYIEEAKGAHNIGLMRD 215
I LK++ +GKT+++ TH I A+ I ++D
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD 220
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 10/201 (4%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
KK GN L +NL + + + LLGPSG GK+TLL I G +G I + +++
Sbjct: 11 KKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTEL 70
Query: 86 ------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKI 138
+G + Q AL+ +++ + + + ++I+ + +E+ K+L + +
Sbjct: 71 PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRY 130
Query: 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIIT 197
LSGGQQ+R++ A +L+ P++L+LDEP LD +L + LK + G T +
Sbjct: 131 PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYV 190
Query: 198 THYIEEAKG-AHNIGLMRDDQ 217
TH EA A I ++R+ +
Sbjct: 191 THDQAEALAMADRIAVIREGE 211
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 15/192 (7%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
V+ +KK G V L +N+N+ + +G+LGPSG GKTT + I G + G + R
Sbjct: 9 VSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR 67
Query: 82 QISD------------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
++ IG + Q AL+ L+ E + M+ ++I R +E+ K+
Sbjct: 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI 127
Query: 130 LELPPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
L++ LSGGQQ+R++ A +L+ +P LL+LDEP LD + +KE+
Sbjct: 128 LDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 189 LN-GKTIIITTH 199
G T+++ +H
Sbjct: 188 SRLGVTLLVVSH 199
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 13/197 (6%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
SV + + K G VV K +NL++ E + +GPSGCGK+TLL I G T+ +G + +
Sbjct: 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62
Query: 79 SFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
++++D +G + Q AL+ LS+ E + + + I R ++ ++L+
Sbjct: 63 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 122
Query: 132 LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS---QIIWDRLKEM 187
L + ALSGGQ++R++ +L+ P + +LDEP LD L +I RL +
Sbjct: 123 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182
Query: 188 ALNGKTIIITTHYIEEA 204
G+T+I TH EA
Sbjct: 183 L--GRTMIYVTHDQVEA 197
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 13/197 (6%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
SV + + K G VV K +NL++ E + +GPSGCGK+TLL I G T+ +G + +
Sbjct: 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62
Query: 79 SFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
++++D +G + Q AL+ LS+ E + + + I R ++ ++L+
Sbjct: 63 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 122
Query: 132 LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS---QIIWDRLKEM 187
L + ALSGGQ++R++ +L+ P + +LDEP LD L +I RL +
Sbjct: 123 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 182
Query: 188 ALNGKTIIITTHYIEEA 204
G+T+I TH EA
Sbjct: 183 L--GRTMIYVTHDQVEA 197
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 13/197 (6%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
SV + + K G VV K +NL++ E + +GPSGCGK+TLL I G T+ +G + +
Sbjct: 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62
Query: 79 SFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
++++D +G + Q AL+ LS+ E + + + I R ++ ++L+
Sbjct: 63 GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 122
Query: 132 LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS---QIIWDRLKEM 187
L + ALSGGQ++R++ +L+ P + +LD+P LD L +I RL +
Sbjct: 123 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKR 182
Query: 188 ALNGKTIIITTHYIEEA 204
G+T+I TH EA
Sbjct: 183 L--GRTMIYVTHDQVEA 197
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 15/192 (7%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
V+ +KK G V L +N+N+ + +G+LGPSG GKTT + I G + G + R
Sbjct: 9 VSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR 67
Query: 82 QISD------------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
++ IG + Q AL+ L+ E + M+ ++I R +E+ K+
Sbjct: 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI 127
Query: 130 LELPPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
L++ LSG QQ+R++ A +L+ +P LL+LDEP LD + +KE+
Sbjct: 128 LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187
Query: 189 LN-GKTIIITTH 199
G T+++ +H
Sbjct: 188 SRLGVTLLVVSH 199
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 28/228 (12%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
V +Y K NH LK +N +P L+G +G GK+T+ + R G IK+ +
Sbjct: 23 VNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGGK 81
Query: 82 QI---------SDIGYMPQELALHGELSIRETFRY---YGYMFDMTDDQI--ETRSKEIL 127
+ S IG +PQ+ L ET +Y YG + D TD+++ T+S ++
Sbjct: 82 NVNKYNRNSIRSIIGIVPQDTIL-----FNETIKYNILYGKL-DATDEEVIKATKSAQLY 135
Query: 128 KLLELPPAK--KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
+E P K IVG LSGG+++RI+ A LL +PK++I DE T LD +
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 182 DRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
++++ N +T+II H + A +I L+ + + + H D+++
Sbjct: 196 KAVEDLRKN-RTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 28/218 (12%)
Query: 22 VTSAYKKIGNHVV--LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
VT YK G ++ LK +NLN+ E + + GPSG GK+T LN I + G + +
Sbjct: 7 VTKTYKX-GEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYID 65
Query: 80 FRQISD-------------IGYMPQELALHGELSIRET------FRYYGYMFDMTDDQIE 120
+ +D IG++ Q+ L L+ E F+Y G + ++
Sbjct: 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAX---SGEERR 122
Query: 121 TRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
R+ E LK EL A LSGGQQ+R++ A +L +NP +++ DEPT LD +
Sbjct: 123 KRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGE 182
Query: 179 IIWDRLKEM-ALNGKTIIITTHYIEEAKGAHNIGLMRD 215
I LK++ +GKT+++ TH I A+ I ++D
Sbjct: 183 KIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD 220
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-------IG 87
++G++ + E ++ GLLGPSG GKTT+L I G G + + ++++D +G
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90
Query: 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQ 146
+ Q AL +++ + + + D+++ R +E+L+ + L A + LSGGQ
Sbjct: 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQ 150
Query: 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEA 204
Q+R++ A +L P++L+ DEP +D + + + ++++ G T + TH EEA
Sbjct: 151 QQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA 209
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
S+ V + K G + G++ V + + LLGPSGCGKTT L + G +G I
Sbjct: 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62
Query: 79 SFRQISDI-------GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK--- 128
++DI G + Q AL+ +++ E + ++ D++E R EI +
Sbjct: 63 DDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL 122
Query: 129 ---LLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
LL+ P + LSGGQQ+R++ A +L+ PK+L+ DEP LD L I+ +K
Sbjct: 123 IDNLLDRKPTQ-----LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIK 177
Query: 186 EMALN-GKTIIITTHYIEEA 204
+ G T + TH EA
Sbjct: 178 HLQQELGITSVYVTHDQAEA 197
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 107/211 (50%), Gaps = 23/211 (10%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--- 83
K G+ VLKG+N+++ E ++ ++GPSG GK+T L C+ D G I + +
Sbjct: 11 KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK 70
Query: 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTD-------------DQIETRSKEILKL 129
+++ + +E+ + + + F + +M + + ++ E ++ E+L
Sbjct: 71 DTNLNKVREEVGM-----VFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDK 125
Query: 130 LELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ L A +LSGGQ +R++ A +L PK+++ DEPT LDP + + +K++A
Sbjct: 126 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 185
Query: 189 LNGKTIIITTHYIEEAKGAHNIGLMRDDQYI 219
G T+++ TH + A+ + L D YI
Sbjct: 186 NEGMTMVVVTHEMGFAREVGDRVLFMDGGYI 216
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 107/211 (50%), Gaps = 23/211 (10%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--- 83
K G+ VLKG+N+++ E ++ ++GPSG GK+T L C+ D G I + +
Sbjct: 32 KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK 91
Query: 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTD-------------DQIETRSKEILKL 129
+++ + +E+ + + + F + +M + + ++ E ++ E+L
Sbjct: 92 DTNLNKVREEVGM-----VFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDK 146
Query: 130 LELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ L A +LSGGQ +R++ A +L PK+++ DEPT LDP + + +K++A
Sbjct: 147 VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206
Query: 189 LNGKTIIITTHYIEEAKGAHNIGLMRDDQYI 219
G T+++ TH + A+ + L D YI
Sbjct: 207 NEGMTMVVVTHEMGFAREVGDRVLFMDGGYI 237
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
V + + K+ GN + LNL + + + LLGPSGCGKTT L I G G I
Sbjct: 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70
Query: 79 SFRQISDIGYMP----------QELALHGELSIRETFRYYGYMFDMTDDQIETR---SKE 125
R D+ Y+P Q A+ +++ E + + D+I+ R + E
Sbjct: 71 GDR---DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 127
Query: 126 ILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
+L++ EL + LSGGQ++R++ A +++ P +L++DEP LD L + +K
Sbjct: 128 LLQIEEL--LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 185
Query: 186 EM--ALNGKTIIITTHYIEEAKGAHNIGLMRDDQYI 219
++ L TI +T +E I +M Q +
Sbjct: 186 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 221
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 20/216 (9%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
V + + K+ GN + LNL + + + LLGPSGCGKTT L I G G I
Sbjct: 12 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 71
Query: 79 SFRQISDIGYMP----------QELALHGELSIRETFRYYGYMFDMTDDQIETR---SKE 125
R D+ Y+P Q A+ +++ E + + D+I+ R + E
Sbjct: 72 GDR---DVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 128
Query: 126 ILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
+L++ EL + LSGGQ++R++ A +++ P +L++DEP LD L + +K
Sbjct: 129 LLQIEEL--LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 186
Query: 186 EM--ALNGKTIIITTHYIEEAKGAHNIGLMRDDQYI 219
++ L TI +T +E I +M Q +
Sbjct: 187 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL 222
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 104/207 (50%), Gaps = 38/207 (18%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS---FRQI------S 84
+ + +L++P + L+GPSG GK+T+L+ ++ +GTI L RQ+ S
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA--------- 135
IG + QE L SI E Y DD ++EI ++ E+ A
Sbjct: 450 KIGTVSQEPILF-SCSIAENIAY------GADDPSSVTAEEIQRVAEVANAVAFIRNFPQ 502
Query: 136 --KKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP---ILSQIIWDRLKE 186
+VG LSGGQ++RI+ A +LL NPK+L+LDE T LD L Q DRL
Sbjct: 503 GFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-- 560
Query: 187 MALNGKTIIITTHYIEEAKGAHNIGLM 213
++G+T+++ H++ K A+ + ++
Sbjct: 561 --MDGRTVLVIAHHLSTIKNANMVAVL 585
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 127/270 (47%), Gaps = 24/270 (8%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K N VL ++L++ +I ++G SGCGKTTLL C+ G D+G I LS + I
Sbjct: 12 KSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSK 71
Query: 86 ----------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA 135
+GY+ QE L L++ +R Y + + I +LEL
Sbjct: 72 NTNLPVRERRLGYLVQEGVLFPHLTV---YRNIAYGLGNGKGRTAQERQRIEAMLELTGI 128
Query: 136 KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL-SQIIWDRLKEMALN 190
++ G LSGGQQ+R + A +L +P+L++LDEP LD L QI D + + N
Sbjct: 129 SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188
Query: 191 GKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGNVINKVD 249
GK+ + +H EEA + A I +M+ + + H++ + L+ AL G I
Sbjct: 189 GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPAD-LDAALFIGEGIVFPA 247
Query: 250 LVDGRGSIDEVLSRQCTVSVDVDRPAINEG 279
++ G+ D L R + V PA G
Sbjct: 248 ALNADGTADCRLGR---LPVQSGAPAGTRG 274
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 38/207 (18%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS---FRQI------S 84
+ + +L++P + L+GPSG GK+T+L+ ++ +GTI L RQ+ S
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418
Query: 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA--------- 135
IG + QE L SI E Y DD ++EI ++ E+ A
Sbjct: 419 KIGTVSQEPILF-SCSIAENIAY------GADDPSSVTAEEIQRVAEVANAVAFIRNFPQ 471
Query: 136 --KKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP---ILSQIIWDRLKE 186
+VG LSGGQ++RI+ A +LL NPK+L+LDE T LD L Q DRL
Sbjct: 472 GFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-- 529
Query: 187 MALNGKTIIITTHYIEEAKGAHNIGLM 213
++G+T+++ H + K A+ + ++
Sbjct: 530 --MDGRTVLVIAHRLSTIKNANMVAVL 554
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 127/267 (47%), Gaps = 41/267 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTL----------LNCIVGRNTLDAGTIKLSF-RQ 82
+LKGLNL V + L+G SGCGK+T L+ +V + D TI + + R+
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 83 ISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK---LLELP-PAKKI 138
I IG + QE L +I E RY D+T D+IE KE +++LP +
Sbjct: 465 I--IGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTL 519
Query: 139 VG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
VG LSGGQ++RI+ A +L+ NPK+L+LDE T LD ++ L + A G+T
Sbjct: 520 VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREGRTT 578
Query: 195 IITTHYIEEAKGAHNIG---------------LMRDDQYIGRLVHHDIVESLVEALEDAL 239
I+ H + + A I LMR+ +LV + +E +A
Sbjct: 579 IVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEAC 638
Query: 240 RHGNVINKVDLVDGRGSIDEVLSRQCT 266
+ + I+ +D+ + S ++ R+ T
Sbjct: 639 KSKDEIDNLDM-SSKDSGSSLIRRRST 664
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 23/216 (10%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84
VL+GL+L V + + L+G SGCGK+T++ + AG++ L ++I +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE--ILKLLELPPAK--KIVG 140
+G + QE L + SI E Y ++ ++I +KE I + ++ P K VG
Sbjct: 1108 QLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 141 ----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
LSGGQ++RI+ A +L+ P +L+LDE T LD +++ + L + A G+T I+
Sbjct: 1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKAREGRTCIV 1225
Query: 197 TTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLV 232
H + + A I ++++ G++ H + L+
Sbjct: 1226 IAHRLSTIQNADLIVVIQN----GKVKEHGTHQQLL 1257
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 127/267 (47%), Gaps = 41/267 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTL----------LNCIVGRNTLDAGTIKLSF-RQ 82
+LKGLNL V + L+G SGCGK+T L+ +V + D TI + + R+
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 83 ISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK---LLELP-PAKKI 138
I IG + QE L +I E RY D+T D+IE KE +++LP +
Sbjct: 465 I--IGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTL 519
Query: 139 VG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
VG LSGGQ++RI+ A +L+ NPK+L+LDE T LD ++ L + A G+T
Sbjct: 520 VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREGRTT 578
Query: 195 IITTHYIEEAKGAHNIG---------------LMRDDQYIGRLVHHDIVESLVEALEDAL 239
I+ H + + A I LMR+ +LV + +E +A
Sbjct: 579 IVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEAC 638
Query: 240 RHGNVINKVDLVDGRGSIDEVLSRQCT 266
+ + I+ +D+ + S ++ R+ T
Sbjct: 639 KSKDEIDNLDM-SSKDSGSSLIRRRST 664
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 23/216 (10%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84
VL+GL+L V + + L+G SGCGK+T++ + AG++ L ++I +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE--ILKLLELPPAK--KIVG 140
+G + QE L + SI E Y ++ ++I +KE I + ++ P K VG
Sbjct: 1108 QLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 141 ----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
LSGGQ++RI+ A +L+ P +L+LDE T LD +++ + L + A G+T I+
Sbjct: 1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKAREGRTCIV 1225
Query: 197 TTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLV 232
H + + A I ++++ G++ H + L+
Sbjct: 1226 IAHRLSTIQNADLIVVIQN----GKVKEHGTHQQLL 1257
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-------IG 87
L L+L V + + +LGP+G GKT L I G + D+G I L + ++D I
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQ--IET-RSKEILKLLELPPAKKIVGALSG 144
++ Q +L +++++ + M + D + ++T R +I LL+ P LSG
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL-----TLSG 130
Query: 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITTHYIEE 203
G+Q+R++ A +L+ NPK+L+LDEP LDP + + L + K T++ TH E
Sbjct: 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190
Query: 204 AK-GAHNIGLMRDDQYIGRLVHHDIVESLVE 233
A+ A I ++ D + I +I E VE
Sbjct: 191 ARIMADRIAVVMDGKLIQVGKPEEIFEKPVE 221
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 20/189 (10%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------- 84
L ++L+VP +IYG++G SG GK+TL+ C+ G++ + ++++
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79
Query: 85 ---DIGYMPQELALHGELSIRETFRYYGYMFDMTD---DQIETRSKEILKLLELPPAKKI 138
IG + Q L LS R F ++ + D+++ R E+L L+ L
Sbjct: 80 ARRQIGMIFQHFNL---LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 136
Query: 139 VGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIII 196
+ LSGGQ++R++ A +L NPK+L+ DE T LDP ++ I + LK++ G TI++
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL 196
Query: 197 TTHYIEEAK 205
TH ++ K
Sbjct: 197 ITHEMDVVK 205
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 23/220 (10%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92
+LK ++ + + + L G +G GKTTLLN + +GT+ L + +GY +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 93 LALH--------------GE----LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP 134
+ H GE + I F+ G D+ DD+I + ++LKL+
Sbjct: 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDI-DDEIRNEAHQLLKLVGXSA 153
Query: 135 -AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193
A++ +G LS G+++R+ A +L P++LILDEP GLD I + + L ++ + T
Sbjct: 154 KAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPT 213
Query: 194 I--IITTHYIEEAKGAHN-IGLMRDDQYIGRLVHHDIVES 230
+ I TH+IEE + I L++D Q I + DI+ S
Sbjct: 214 LAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 98/189 (51%), Gaps = 20/189 (10%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------- 84
L ++L+VP +IYG++G SG GK+TL+ C+ G++ + ++++
Sbjct: 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102
Query: 85 ---DIGYMPQELALHGELSIRETFRYYGYMFDMTD---DQIETRSKEILKLLEL-PPAKK 137
IG + Q L LS R F ++ + D+++ R E+L L+ L
Sbjct: 103 ARRQIGMIFQHFNL---LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIII 196
LSGGQ++R++ A +L NPK+L+ D+ T LDP ++ I + LK++ G TI++
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219
Query: 197 TTHYIEEAK 205
TH ++ K
Sbjct: 220 ITHEMDVVK 228
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 23/214 (10%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI----------VGRNTLDAGTIKLSFRQI 83
VL G+N +V + +LG +G GK+TL+N I V + LD T+KL +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR- 416
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK------EILKLLELPPAKK 137
I +PQE L +I+E ++ D TDD+I +K I+ L E ++
Sbjct: 417 GHISAVPQETVLFSG-TIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRV 473
Query: 138 IVGA--LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
G SGGQ++R+S A +L+ PK+LILD+ T +DPI + I D LK G T
Sbjct: 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTF 532
Query: 196 ITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
I T I A A I ++ + + G H +++E
Sbjct: 533 IITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 20/183 (10%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------- 84
L ++L+VP +IYG++G SG GK+TL+ C+ G++ + ++++
Sbjct: 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102
Query: 85 ---DIGYMPQELALHGELSIRETFRYYGYMFDMTD---DQIETRSKEILKLLEL-PPAKK 137
IG + Q L LS R F ++ + D+++ R E+L L+ L
Sbjct: 103 ARRQIGXIFQHFNL---LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIII 196
LSGGQ++R++ A +L NPK+L+ D+ T LDP ++ I + LK++ G TI++
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219
Query: 197 TTH 199
TH
Sbjct: 220 ITH 222
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 19/177 (10%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD--------- 85
+KG++L VP +I L+G +G GKTT L+ I G G I + + I++
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA-----KKIV 139
I +P+ + EL++ E Y + D E +++ + L P K++
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAY--NRKDK--EGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
G LSGG+Q+ ++ +L PKLL DEP++GL PIL +++ ++++ G TI++
Sbjct: 138 GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 123/282 (43%), Gaps = 47/282 (16%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
V + +K G ++ ++L V + + LLGPSGCGKTT L I G G I +
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 80 FRQIS-------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126
+ ++ DI + Q AL+ +++ + + + + +I+ R +E+
Sbjct: 64 DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV 123
Query: 127 LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
+LL L + LSGGQ++R++ +++ P++ ++DEP LD L + LK
Sbjct: 124 AELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELK 183
Query: 186 EMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGNVI 245
++ + + +TT Y V HD VE++ A+ + V+
Sbjct: 184 KLQ---RQLGVTTIY----------------------VTHDQVEAMTMGDRIAVMNRGVL 218
Query: 246 NKVDLVDGRGSIDEVLSRQCTVSVD--VDRPAINEGDYVWTQ 285
+V GS DEV + V + P +N D + T+
Sbjct: 219 QQV------GSPDEVYDKPANTFVAGFIGSPPMNFLDAIVTE 254
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 19/212 (8%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLL-------NCIVGRNTLDAGTIKL--SFRQIS 84
+LKGL+ +V + L+GPSGCGK+T++ + + G +D IK S
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153
Query: 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE--TRSKEILKLL-ELPPAKKI-VG 140
I + QE L + SI E Y +T Q+E R I + ELP + VG
Sbjct: 1154 QIAIVSQEPTLF-DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212
Query: 141 ----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
LSGGQ++RI+ A +L+ NPK+L+LDE T LD +++ + L + A G+T I+
Sbjct: 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL-DRAREGRTCIV 1271
Query: 197 TTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV 228
H + A I ++ + I + H ++
Sbjct: 1272 IAHRLNTVMNADCIAVVSNGTIIEKGTHTQLM 1303
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 49/217 (22%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-------GRNTLDAGTIK---LSFRQI 83
+L+G+NL V + L+G SGCGK+T+++ ++ G+ T+D ++ L F +
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR- 491
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA-- 141
++ + QE AL F+ T ++ + KE + E+ A K+ A
Sbjct: 492 KNVAVVSQEPAL----------------FNCTIEENISLGKEGITREEMVAACKMANAEK 535
Query: 142 -------------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
LSGGQ++RI+ A +L+ NPK+L+LDE T LD I+
Sbjct: 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQ 595
Query: 183 RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYI 219
L + A G+T II H + + A I ++ Q +
Sbjct: 596 ALDKAA-KGRTTIIIAHRLSTIRNADLIISCKNGQVV 631
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 32/201 (15%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
K G L G++++V + + ++GP+G GK+TL+N I G D G + + I++
Sbjct: 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN- 73
Query: 87 GYMPQELALHG------------ELSIRETFR--------------YYGYMFDMTDDQIE 120
P EL +G E+++ E +Y ++ +E
Sbjct: 74 -KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE 132
Query: 121 TRSK--EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
K E LKL L K G LSGGQ + + +L+ NPK++++DEP G+ P L+
Sbjct: 133 KAFKILEFLKLSHLYDRK--AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 179 IIWDRLKEMALNGKTIIITTH 199
I++ + E+ G T +I H
Sbjct: 191 DIFNHVLELKAKGITFLIIEH 211
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 32/201 (15%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
K G L G++++V + + ++GP+G GK+TL+N I G D G + + I++
Sbjct: 15 KYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN- 73
Query: 87 GYMPQELALHG------------ELSIRETFR--------------YYGYMFDMTDDQIE 120
P EL +G E+++ E +Y ++ +E
Sbjct: 74 -KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE 132
Query: 121 TRSK--EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
K E LKL L K G LSGGQ + + +L+ NPK++++DEP G+ P L+
Sbjct: 133 KAFKILEFLKLSHLYDRK--AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAH 190
Query: 179 IIWDRLKEMALNGKTIIITTH 199
I++ + E+ G T +I H
Sbjct: 191 DIFNHVLELKAKGITFLIIEH 211
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 34/221 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84
+L+ ++ N I GPSG GK+T+ + + AG I + + I S
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGAL-- 142
IG++ Q+ A+ +IRE Y G D TD+ ++ ++L+L A+ V +
Sbjct: 77 QIGFVSQDSAIMAG-TIRENLTY-GLEGDYTDE-------DLWQVLDLAFARSFVENMPD 127
Query: 143 -------------SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
SGGQ++R++ A + L NPK+L+LDE T LD ++ L + +
Sbjct: 128 QLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL-M 186
Query: 190 NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230
G+T ++ H + A I + Q G H+++V +
Sbjct: 187 KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL---NCIV----GRNTLDAGTIKLSFRQ 82
G H LKG+N+N+ ++ +LG +G GK+TL N I+ GR D I S +
Sbjct: 20 GTHA-LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78
Query: 83 I----SDIGYMPQELALH-GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK- 136
I IG + Q+ S+ + + + +D+I R LK + K
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD 138
Query: 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTII 195
K LS GQ++R++ A L+ PK+LILDEPT GLDP+ I L EM G TII
Sbjct: 139 KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITII 198
Query: 196 ITTHYIE 202
I TH I+
Sbjct: 199 IATHDID 205
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 32/201 (15%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
K G L G++++V + + ++GP+G GK+TL+N I G D G + + I++
Sbjct: 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN- 73
Query: 87 GYMPQELALHG------------ELSIRETFR--------------YYGYMFDMTDDQIE 120
P EL +G E+++ E +Y ++ +E
Sbjct: 74 -KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVE 132
Query: 121 TRSK--EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
K E LKL L K G LSGGQ + + +L+ NPK++++D+P G+ P L+
Sbjct: 133 KAFKILEFLKLSHLYDRK--AGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAH 190
Query: 179 IIWDRLKEMALNGKTIIITTH 199
I++ + E+ G T +I H
Sbjct: 191 DIFNHVLELKAKGITFLIIEH 211
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 15/201 (7%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
V + + +K+ G+ +K L+L + + + LLGPSGCGKTT L I G G I +
Sbjct: 6 EVKLINIWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYI 65
Query: 79 SFRQIS-------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
++ D+ + Q AL+ ++ + + + + +I+ R +E
Sbjct: 66 EDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVRE 125
Query: 126 ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+ + L L + LSGGQ++R++ +++ PK+ + DEP LD L L
Sbjct: 126 VAEXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAEL 185
Query: 185 KEMALN-GKTIIITTHYIEEA 204
K++ G T I TH EA
Sbjct: 186 KKLQRQLGVTTIYVTHDQVEA 206
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 20/212 (9%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
L ++ ++P+ K L+G SG GK+T+ N +D+G+I L + D Y L
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD--YKLTNL 415
Query: 94 ALHGELSIRETFRY---------YGYMFDMTDDQIE--TRSKEILKLLELPPA--KKIVG 140
H L + + Y + T +QIE R ++ +E P ++G
Sbjct: 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIG 475
Query: 141 ----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
+LSGGQ++R++ A +LL + +LILDE T LD + I L E+ N KT+++
Sbjct: 476 ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN-KTVLV 534
Query: 197 TTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV 228
H + + A I ++ + + I R H D++
Sbjct: 535 IAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 20/215 (9%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
K I + +LKG++L+V + + ++G SG GK+TLL + LDA T F + ++
Sbjct: 12 KVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL---GLLDAPTEGKVFLEGKEV 68
Query: 87 GYM-PQELALHGELSIRETFRYYGY-------------MFDMTDDQIETRSKEILKLLEL 132
Y +EL+L + F+++ M M + E + + L EL
Sbjct: 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL 128
Query: 133 PPAKKIVGA---LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
K+ LSGG+Q+R++ A +L + P LL DEPT LD ++ + D ++
Sbjct: 129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 190 NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224
G +I++ TH E A+ H M+D + +G +
Sbjct: 189 GGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 11/192 (5%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ + S + VLK +N KIY ++G +G GKTTLL + G AG I L
Sbjct: 12 IELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL-LAAAGEIFLD 70
Query: 80 ------FRQISDIGYMPQELALH--GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
F ++GY+ Q + G ++ E + + + + ++ R K++L+L+
Sbjct: 71 GSPADPFLLRKNVGYVFQNPSSQIIGA-TVEEDVAFSLEIMGLDESEMRKRIKKVLELVG 129
Query: 132 LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190
L A LSGGQ++R++ A L + + L LDEP LDP + I+ L+ +
Sbjct: 130 LSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE 189
Query: 191 GKTIIITTHYIE 202
GK II+ TH +E
Sbjct: 190 GKGIILVTHELE 201
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 27/224 (12%)
Query: 25 AYKKIGNHVVLKGLNLNVPENKIYG-LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83
A K++GN LN++ + Y LLGP+G GK+ L I G D G ++L+ I
Sbjct: 7 AEKRLGNF----RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 84 SD-------IGYMPQELALHGELSIRETFRY----YGYMFDMTDDQIETRSKEILKLLEL 132
+ IG++PQ+ AL LS+ Y + + I LL+
Sbjct: 63 TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR 122
Query: 133 PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK--EMALN 190
PA+ LSGG+++R++ A +L+ P+LL+LDEP +D ++ + L+ + +
Sbjct: 123 KPAR-----LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD 177
Query: 191 GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
+ +T IE A A + +M + GR+V ++ L A
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLN----GRIVEKGKLKELFSA 217
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 25/215 (11%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---KLSFRQI------S 84
VLK + ++ + L+GP+G GKTT++N ++ +D G I + R+I S
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429
Query: 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE-----TRSKEILKLLELPPAKKIV 139
IG + Q+ L +++E +Y TD++I+ T S +K LP + V
Sbjct: 430 SIGIVLQDTILFST-TVKENLKYGNP--GATDEEIKEAAKLTHSDHFIK--HLPEGYETV 484
Query: 140 GA-----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
LS GQ++ ++ + L NPK+LILDE T +D + I + ++ + GKT
Sbjct: 485 LTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL-MEGKTS 543
Query: 195 IITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
II H + K A I ++RD + + H ++++
Sbjct: 544 IIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 14/196 (7%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYM 89
+ + + LN ++ + I +LG +GCGK+TLL+ ++G + G I++ IG++
Sbjct: 16 AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV----YQSIGFV 71
Query: 90 PQELALHGELSI-------RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGAL 142
PQ + S+ R T D Q+ ++ + L L L AK+ +L
Sbjct: 72 PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL--AKREFTSL 129
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYI 201
SGGQ++ I A ++ KL++LDEPT LD I+ L ++A + T++ TTH
Sbjct: 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189
Query: 202 EEAKGAHNIGLMRDDQ 217
+ N L+ + Q
Sbjct: 190 NQVVAIANKTLLLNKQ 205
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 101/212 (47%), Gaps = 21/212 (9%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-------- 85
L+ ++ V + L+GPSG GK+T+L + + +G I++ + IS
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEIL---KLLELPPAKKI-VG 140
IG +PQ+ L + +I + RY +D++E ++ ++ P + VG
Sbjct: 129 HIGVVPQDTVLFND-TIADNIRYG--RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVG 185
Query: 141 ----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
LSGG+++R++ A ++L P +++LDE T LD + I L ++ N +T I+
Sbjct: 186 ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCAN-RTTIV 244
Query: 197 TTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV 228
H + A I +++D + R H ++
Sbjct: 245 VAHRLSTVVNADQILVIKDGCIVERGRHEALL 276
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 28/208 (13%)
Query: 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77
H +++ + + + +L+GL+L+V +++ ++GP+G GK+TL + GR +
Sbjct: 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT 78
Query: 78 LSFRQISDIGYMPQELALHGELSIRETFRY--------------------YGYMFDMTDD 117
+ F+ + P++ A G I F+Y Y T D
Sbjct: 79 VEFKGKDLLALSPEDRAGEG---IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLD 135
Query: 118 QIETRS--KEILKLLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
+ + + +E + LL++P + + SGG+++R + P+L ILDE GL
Sbjct: 136 RFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGL 195
Query: 173 DPILSQIIWDRLKEMALNGKTIIITTHY 200
D +++ D + + ++ II THY
Sbjct: 196 DIDALKVVADGVNSLRDGKRSFIIVTHY 223
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 25/209 (11%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
V +K+ G H VLKG++L + ++G SG GK+T L CI G I ++ +
Sbjct: 9 VIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQ 68
Query: 82 QISDIGYMPQELALHGELSIR-------ETFRYYGYMFDMT--DDQIE------------ 120
I+ + +L + + +R F+++ MT ++ +E
Sbjct: 69 NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD 128
Query: 121 TRSKEILKLLELPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
R + + L ++ ++ G LSGGQQ+R+S A +L P +L+ DEPT LDP L
Sbjct: 129 ARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPEL 188
Query: 177 SQIIWDRLKEMALNGKTIIITTHYIEEAK 205
+ ++++A GKT+++ TH + A+
Sbjct: 189 VGEVLRIMQQLAEEGKTMVVVTHEMGFAR 217
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 24/214 (11%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----------SFRQI 83
L+ +NL +P K L+G SG GK+T+ + I +D G I + S R
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLR-- 416
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKK----IV 139
+ + + Q + L + Y + +QIE ++ + + ++
Sbjct: 417 NQVALVSQNVHLFNDTVANNI--AYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVI 474
Query: 140 GA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
G LSGGQ++RI+ A +LL + +LILDE T LD + I L E+ N +T +
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN-RTSL 533
Query: 196 ITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
+ H + + A I ++ D + R H+D++E
Sbjct: 534 VIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLE 567
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 28/206 (13%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+++ + + + +L+GL+L+V +++ ++GP+G GK+TL + GR + +
Sbjct: 2 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE 61
Query: 80 FRQISDIGYMPQELALHGELSIRETFRY--------------------YGYMFDMTDDQI 119
F+ + P++ A G I F+Y Y T D+
Sbjct: 62 FKGKDLLALSPEDRAGEG---IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRF 118
Query: 120 ETRS--KEILKLLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
+ + +E + LL++P + + SGG+++R + P+L ILDE GLD
Sbjct: 119 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178
Query: 175 ILSQIIWDRLKEMALNGKTIIITTHY 200
+++ D + + ++ II THY
Sbjct: 179 DALKVVADGVNSLRDGKRSFIIVTHY 204
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 30/231 (12%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS-- 79
V+ AY N VL+GL + K+ L+GP+G GK+T+ + G + L
Sbjct: 22 VSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGE 81
Query: 80 ----------FRQISDIGYMPQELALHGELSIRETFRY----YGYMFDMTDDQIETRSKE 125
Q++ +G QE L G S RE Y M ++T +E+ + +
Sbjct: 82 PLVQYDHHYLHTQVAAVG---QEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHD 137
Query: 126 ILKLLELPPAKKI-VG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
+ P VG LSGGQ++ ++ A +L+ P+LLILD+ T LD +Q+
Sbjct: 138 FIS--GFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALD-AGNQLR 194
Query: 181 WDRL--KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
RL + +T+++ TH + A+ AH+I +++ + H ++E
Sbjct: 195 VQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 14/163 (8%)
Query: 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG 74
++K + T KK+G+ ++ N E +I G+LGP+G GKTT +VG T D G
Sbjct: 265 DLKTKMKWTKIIKKLGDFQLVVD-NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEG 323
Query: 75 TIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS---KEILKLLE 131
++ +QI + Y PQ + + + ++++ Y+ + + D + T S +E+ K L
Sbjct: 324 SVTPE-KQI--LSYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLN 374
Query: 132 LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
L + V LSGG+ +++ A +L L +LD+P+ LD
Sbjct: 375 LHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 35 LKGLNLNVPENK-IYGLLGPSGCGKTTLLNCIVGRNTLDAG---------TIKLSFRQIS 84
K L P+N I G+LG +G GKTT+L + G + G + FR
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 85 DIGYMPQELALHGELSIRETFRYYGY---MFDMTDDQIETR---------SKEILKLLEL 132
Y + EL I +Y Y T ++I T+ KE+L + L
Sbjct: 74 IYNYFKE--LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131
Query: 133 PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
K LSGG +R+ A SLL + I D+P+ LD + ++E+ L K
Sbjct: 132 --WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL-LKNK 188
Query: 193 TIIITTH 199
+I+ H
Sbjct: 189 YVIVVDH 195
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 88/173 (50%), Gaps = 14/173 (8%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L G+ ++PE + ++G GCGK++LL+ ++ G + + + Y+PQ+
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK----GSVAYVPQQAW 76
Query: 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA--KKIVGA----LSGGQQR 148
+ + S+RE +G + + ++ +L LE+ P+ + +G LSGGQ++
Sbjct: 77 IQND-SLRENI-LFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 134
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL--KEMALNGKTIIITTH 199
R+S A ++ N + + D+P +D + + I++ + + L KT I+ TH
Sbjct: 135 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 35/199 (17%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR-----QI 83
+GN V LK +NLN+ + ++ + G +G GKT+LL I+G G IK S R Q
Sbjct: 49 VGNPV-LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQF 107
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL--------PPA 135
S I MP +I+E +G +D E R K ++K +L
Sbjct: 108 SWI--MPG--------TIKENI-IFGVSYD------EYRYKSVVKACQLQQDITKFAEQD 150
Query: 136 KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
++G LSGGQ+ RIS A ++ + L +LD P LD + +++ +
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 192 KTIIITTHYIEEAKGAHNI 210
KT I+ T +E + A I
Sbjct: 211 KTRILVTSKMEHLRKADKI 229
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 35/199 (17%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR-----QI 83
+GN V LK +NLN+ + ++ + G +G GKT+LL I+G G IK S R Q
Sbjct: 49 VGNPV-LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQF 107
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL--------PPA 135
S I MP +I+E +G +D E R K ++K +L
Sbjct: 108 SWI--MPG--------TIKENI-IFGVSYD------EYRYKSVVKACQLQQDITKFAEQD 150
Query: 136 KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
++G LSGGQ+ RIS A ++ + L +LD P LD + +++ +
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 192 KTIIITTHYIEEAKGAHNI 210
KT I+ T +E + A I
Sbjct: 211 KTRILVTSKMEHLRKADKI 229
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 48/235 (20%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92
V+L +NL++ + ++ G++G SG GK+TL I + G + + +
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID----------GHD 66
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRS--------KEILKLLELPPAKKIVGA--- 141
LAL +R R G + + D+ + RS + + ++ A K+ GA
Sbjct: 67 LALADPNWLR---RQVGVV--LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 142 ------------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
LSGGQ++RI+ A +L++NPK+LI DE T LD +I
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 184 LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV---ESLVEAL 235
+ ++ G+T+II H + K A I +M + + + H +++ ESL L
Sbjct: 182 MHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 48/235 (20%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92
V+L +NL++ + ++ G++G SG GK+TL I + G + + +
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID----------GHD 72
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRS--------KEILKLLELPPAKKIVGA--- 141
LAL +R R G + + D+ + RS + + ++ A K+ GA
Sbjct: 73 LALADPNWLR---RQVGVV--LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 142 ------------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
LSGGQ++RI+ A +L++NPK+LI DE T LD +I
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 184 LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV---ESLVEAL 235
+ ++ G+T+II H + K A I +M + + + H +++ ESL L
Sbjct: 188 MHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 106/235 (45%), Gaps = 48/235 (20%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92
V+L +NL++ + ++ G++G SG GK+TL I + G + + +
Sbjct: 19 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID----------GHD 68
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRS--------KEILKLLELPPAKKIVGA--- 141
LAL +R R G + + D+ + RS + + ++ A K+ GA
Sbjct: 69 LALADPNWLR---RQVGVV--LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 142 ------------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
LSGGQ++RI+ A +L++NPK+LI DE T LD +I
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 184 LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV---ESLVEAL 235
+ ++ G+T+II H + K A I +M + + + H +++ ESL L
Sbjct: 184 MHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD----IGYM 89
VL+ + + + + + GP+G GKTTLL I G I + I+ I ++
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFL 83
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRR 149
P+E+ + ++S+ + + ++ + ++ E + L+ +E+ KK +G LS G RR
Sbjct: 84 PEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM--DALESVEVLDLKKKLGELSQGTIRR 141
Query: 150 ISFAVSLLHNPKLLILDEPTVGLD 173
+ A +LL N ++ +LD+P V +D
Sbjct: 142 VQLASTLLVNAEIYVLDDPVVAID 165
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 48/235 (20%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92
V+L +NL++ + ++ G++G +G GK+TL I + G + + +
Sbjct: 19 VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLID----------GHD 68
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRS--------KEILKLLELPPAKKIVGA--- 141
LAL +R R G + + D+ + RS + + ++ A K+ GA
Sbjct: 69 LALADPNWLR---RQVGVV--LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 142 ------------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
LSGGQ++RI+ A +L++NPK+LI DE T LD +I
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 184 LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV---ESLVEAL 235
+ ++ G+T+II H + K A I +M + + + H +++ ESL L
Sbjct: 184 MHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR-----QI 83
+GN V LK +NLN+ + ++ + G +G GKT+LL I+G G IK S R Q
Sbjct: 49 VGNPV-LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQF 107
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVG--- 140
S I MP + E I ++ Y Y + Q++ ++I K E ++G
Sbjct: 108 SWI--MPGTIK---ENIIGVSYDEYRYKSVVKACQLQ---QDITKFAE--QDNTVLGEGG 157
Query: 141 -ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LSGGQ+ RIS A ++ + L +LD P LD + +++ + KT I+ T
Sbjct: 158 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 217
Query: 200 YIEEAKGAHNI 210
+E + A I
Sbjct: 218 KMEHLRKADKI 228
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 106/235 (45%), Gaps = 48/235 (20%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92
V+L +NL++ + ++ G++G SG GK+TL I + G + + +
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID----------GHD 72
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRS--------KEILKLLELPPAKKIVGA--- 141
LAL +R R G + + D+ + RS + + ++ A K+ GA
Sbjct: 73 LALADPNWLR---RQVGVV--LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 142 ------------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
LSGGQ++RI+ A +L++NPK+LI D+ T LD +I
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN 187
Query: 184 LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV---ESLVEAL 235
+ ++ G+T+II H + K A I +M + + + H +++ ESL L
Sbjct: 188 MHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 34/209 (16%)
Query: 24 SAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR-- 81
+A+ + G VLK +N + ++ + G +G GKT+LL I+G G IK S R
Sbjct: 13 TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS 72
Query: 82 ---QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP---- 134
Q S I MP +I+E +G +D E R + ++K +L
Sbjct: 73 FCSQFSWI--MPG--------TIKENI-IFGVSYD------EYRYRSVIKACQLEEDISK 115
Query: 135 -AKK---IVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
A+K ++G LSGGQ+ RIS A ++ + L +LD P LD + + I++
Sbjct: 116 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 175
Query: 187 MALNGKTIIITTHYIEEAKGAHNIGLMRD 215
+ KT I+ T +E K A I ++ +
Sbjct: 176 KLMANKTRILVTSKMEHLKKADKILILHE 204
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 34/209 (16%)
Query: 24 SAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR-- 81
+A+ + G VLK +N + ++ + G +G GKT+LL I+G G IK S R
Sbjct: 25 TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS 84
Query: 82 ---QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP---- 134
Q S I MP +I+E +G +D E R + ++K +L
Sbjct: 85 FCSQFSWI--MPG--------TIKENI-IFGVSYD------EYRYRSVIKACQLEEDISK 127
Query: 135 -AKK---IVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
A+K ++G LSGGQ+ RIS A ++ + L +LD P LD + + I++
Sbjct: 128 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 187
Query: 187 MALNGKTIIITTHYIEEAKGAHNIGLMRD 215
+ KT I+ T +E K A I ++ +
Sbjct: 188 KLMANKTRILVTSKMEHLKKADKILILHE 216
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 24/213 (11%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----------SFRQI 83
L+ +NL +P K L+G SG GK+T+ + I +D G I + S R
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR-- 416
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKK----IV 139
+ + + Q + L + Y + + +QIE ++ + + I+
Sbjct: 417 NQVALVSQNVHLFNDTVANNI--AYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTII 474
Query: 140 GA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
G LSGGQ++RI+ A +LL + +LILDE T LD + I L E+ N +T +
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN-RTSL 533
Query: 196 ITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV 228
+ H + + A I ++ D + R H +++
Sbjct: 534 VIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR------NTLDAGTIKLSFRQISDIGY 88
L+ ++L + E + + G +G GK+TLL + G + L G K + +IG
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 84
Query: 89 MPQ--ELALHGELSIRE-TFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG 145
Q E E E F + D + ++ E + L ++ LSGG
Sbjct: 85 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGG 144
Query: 146 QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE 202
++RR++ A ++H P +LILDEP VGLD + +++ GKT+I+ +H IE
Sbjct: 145 EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 201
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 30/231 (12%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS-- 79
V+ AY N VL+GL + K+ L+GP+G GK+T+ + G + L
Sbjct: 22 VSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGE 81
Query: 80 ----------FRQISDIGYMPQELALHGELSIRETFRY----YGYMFDMTDDQIETRSKE 125
Q++ +G QE L G S RE Y M ++T +E+ + +
Sbjct: 82 PLVQYDHHYLHTQVAAVG---QEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHD 137
Query: 126 ILKLLELPPAKKI-VG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
+ P VG LSGGQ++ ++ A +L+ P+LLILD T LD +Q+
Sbjct: 138 FIS--GFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD-AGNQLR 194
Query: 181 WDRL--KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
RL + +T+++ T + A+ AH+I +++ + H ++E
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR------NTLDAGTIKLSFRQISDIGY 88
L+ ++L + E + + G +G GK+TLL + G + L G K + +IG
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82
Query: 89 MPQ--ELALHGELSIRE-TFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG 145
Q E E E F + D + ++ E + L ++ LSGG
Sbjct: 83 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGG 142
Query: 146 QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE 202
++RR++ A ++H P +LILDEP VGLD + +++ GKT+I+ +H IE
Sbjct: 143 EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE 199
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 90/199 (45%), Gaps = 35/199 (17%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR-----QI 83
+GN V LK +NLN+ + ++ + G +G GKT+LL I+G G IK S R Q
Sbjct: 49 VGNPV-LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQF 107
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL--------PPA 135
S I MP + E IR G +D E R K ++K +L
Sbjct: 108 SWI--MPGTIK---ENIIR------GVSYD------EYRYKSVVKACQLQQDITKFAEQD 150
Query: 136 KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
++G LSGGQ+ RIS A ++ + L +LD P LD + +++ +
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 192 KTIIITTHYIEEAKGAHNI 210
KT I+ T +E + A I
Sbjct: 211 KTRILVTSKMEHLRKADKI 229
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 35/199 (17%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR-----QI 83
+GN V LK +NLN+ + ++ + G +G GKT+LL I+G G IK S R Q
Sbjct: 49 VGNPV-LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQF 107
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL--------PPA 135
S I MP +I+E G +D E R K ++K +L
Sbjct: 108 SWI--MPG--------TIKENI-ISGVSYD------EYRYKSVVKACQLQQDITKFAEQD 150
Query: 136 KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
++G LSGGQ+ RIS A ++ + L +LD P LD + +++ +
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 192 KTIIITTHYIEEAKGAHNI 210
KT I+ T +E + A I
Sbjct: 211 KTRILVTSKMEHLRKADKI 229
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-------- 85
+LK +NL++ + + +G SG GK+TL+N I + +G I + I D
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK---LLELPPAKKI-VG 140
IG + Q+ L + +++E G TD+++ +K ++ LP VG
Sbjct: 416 QIGLVQQDNILFSD-TVKENI-LLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472
Query: 141 ----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
LSGGQ++R+S A L+NP +LILDE T LD II + L ++ +T +I
Sbjct: 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLI 531
Query: 197 TTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV 228
H + A I ++ + + H +++
Sbjct: 532 VAHRLSTITHADKIVVIENGHIVETGTHRELI 563
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 27/194 (13%)
Query: 37 GLNLNVPENKIYGLLGPSGCGKTTLLNC----------IVGRNTLDAGTIKLSFRQ---- 82
G++L++ EN + ++G S GK+T++ I+ L G L+ R+
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 83 ---ISDIGYMPQ--ELALHGELSIRETFR--YYGYMFDMTDDQIETRSKEILKLLELPPA 135
+I +PQ + +L+ + + E F+ + + ++ ++ E L+++ L P
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPE 145
Query: 136 KKIVG---ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ--IIWDRLKEMALN 190
+ LSGG ++R+ A++LL +P +LILDEPT LD +L+Q II + +
Sbjct: 146 AVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALD-VLTQAHIIQLLKELKKML 204
Query: 191 GKTIIITTHYIEEA 204
T+I TH I A
Sbjct: 205 KITLIFVTHDIAVA 218
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 19/201 (9%)
Query: 24 SAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR-- 81
+A+ + G VLK +N + ++ + G +G GKT+LL I+G G IK S R
Sbjct: 13 TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS 72
Query: 82 ---QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKI 138
Q S I MP + E I ++ Y Y + Q+E ++I K E +
Sbjct: 73 FCSQFSWI--MPGTIK---ENIIGVSYDEYRYRSVIKACQLE---EDISKFAE--KDNIV 122
Query: 139 VG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
+G LSGGQ+ RIS A ++ + L +LD P LD + + I++ + KT
Sbjct: 123 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 182
Query: 195 IITTHYIEEAKGAHNIGLMRD 215
I+ T +E K A I ++ +
Sbjct: 183 ILVTSKMEHLKKADKILILHE 203
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 31/162 (19%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83
G ++L L + + YG+ GP+GCGK+TL+ I +D + R +
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI-ANGQVDGFPTQEECRTVYVEHDI 504
Query: 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
SD + + + +E + F TD+ ++ +P +
Sbjct: 505 DGTHSDTSVL--DFVFESGVGTKEAIKDKLIEFGFTDE-----------MIAMP-----I 546
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
ALSGG + +++ A ++L N +L+LDEPT LD + + W
Sbjct: 547 SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTV--NVAW 586
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGGQ+ ++ A P L++LDEPT LD + LKE G IIIT
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIIT 955
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRET-FRY 107
++GP+G GK+TL+N + G +G + + I Y+ Q H E + +T Y
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYT--HENCRIAYIKQHAFAHIESHLDKTPSEY 760
Query: 108 YGYMFDMTDDQ 118
+ F +D+
Sbjct: 761 IQWRFQTGEDR 771
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 38/205 (18%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL--- 78
+T+ Y + GN +L+ ++ ++ + GLLG +G GK+TLL+ + R G I++
Sbjct: 25 LTAKYTEGGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGV 82
Query: 79 SFRQIS------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
S+ I+ G +PQ++ F + G D +EI K+ +
Sbjct: 83 SWDSITLEQWRKAFGVIPQKV-----------FIFSGTFRKNLDPNAAHSDQEIWKVADE 131
Query: 133 PPAKKIV---------------GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
+ ++ LS G ++ + A S+L K+L+LDEP+ LDP+
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 178 QIIWDRLKEMALNGKTIIITTHYIE 202
QII LK+ A T+I+ IE
Sbjct: 192 QIIRRTLKQ-AFADCTVILCEARIE 215
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 48/235 (20%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92
V+L +NL++ + ++ G++G SG GK+TL I + G + + +
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID----------GHD 66
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRS--------------KEILKLLELPPAKKI 138
LAL +R R G + + D+ + RS ++++ +L A
Sbjct: 67 LALADPNWLR---RQVGVV--LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 139 VGAL---------------SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
+ L SGGQ++RI+ A +L++NPK+LI DE T LD +I
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 184 LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV---ESLVEAL 235
+ ++ G+T+II + K A I +M + + + H +++ ESL L
Sbjct: 182 MHKIC-KGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 48/235 (20%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92
V+L +NL++ + ++ G++G SG GK+TL I + G + + +
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID----------GHD 72
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRS--------------KEILKLLELPPAKKI 138
LAL +R R G + + D+ + RS ++++ +L A
Sbjct: 73 LALADPNWLR---RQVGVV--LQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 139 VGAL---------------SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
+ L SGGQ++RI+ A +L++NPK+LI DE T LD +I
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 184 LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV---ESLVEAL 235
+ ++ G+T+II + K A I +M + + + H +++ ESL L
Sbjct: 188 MHKIC-KGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 27/190 (14%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-E 92
VLK +N + ++ + G +G GKT+LL I+G G IK S R I + Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQNS 108
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-----AKK---IVG---- 140
+ G +I+E G +D E R + ++K +L A+K ++G
Sbjct: 109 WIMPG--TIKENI--IGVSYD------EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
LSGGQ+ RIS A ++ + L +LD P LD + + I++ + KT I+ T
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 201 IEEAKGAHNI 210
+E K A I
Sbjct: 219 MEHLKKADKI 228
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 31/162 (19%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83
G ++L L + + YG+ GP+GCGK+TL I +D + R +
Sbjct: 440 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAI-ANGQVDGFPTQEECRTVYVEHDI 498
Query: 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
SD + + + +E + F TD+ I +
Sbjct: 499 DGTHSDTSVL--DFVFESGVGTKEAIKDKLIEFGFTDEXIAXP----------------I 540
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
ALSGG + +++ A ++L N +L+LDEPT LD + + W
Sbjct: 541 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTV--NVAW 580
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGGQ+ ++ A P L++LDEPT LD + LKE G IIIT
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIIT 949
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRET-FRY 107
++GP+G GK+TL+N + G +G + + I Y+ Q H E + +T Y
Sbjct: 697 AVIGPNGAGKSTLINVLTGELLPTSGEVYT--HENCRIAYIKQHAFAHIESHLDKTPSEY 754
Query: 108 YGYMFDMTDDQ 118
+ F +D+
Sbjct: 755 IQWRFQTGEDR 765
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 27/190 (14%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-E 92
VLK +N + ++ + G +G GKT+LL I+G G IK S R I + Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQNS 108
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-----AKK---IVG---- 140
+ G +I+E G +D E R + ++K +L A+K ++G
Sbjct: 109 WIMPG--TIKENI--IGVSYD------EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
LSGGQ+ RIS A ++ + L +LD P LD + + I++ + KT I+ T
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 201 IEEAKGAHNI 210
+E K A I
Sbjct: 219 MEHLKKADKI 228
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Query: 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG--RNTLDAGTIKLSFRQI 83
+ I +LKG+NL VP+ +++ L+GP+G GK+TL + G T++ G I L I
Sbjct: 10 WASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENI 69
Query: 84 SDIGYMPQELALHG-ELSIRETFRYYGYMF--------------DMTDDQIETRSKEILK 128
++ P E A G L+ + G ++ + T+ K+ L+
Sbjct: 70 LELS--PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALE 127
Query: 129 LLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
LL+ ++ + SGG+++R L+ P +LDE GLD +++ +
Sbjct: 128 LLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVN 187
Query: 186 EMALNGKTIIITTHY 200
M ++ THY
Sbjct: 188 AMRGPNFGALVITHY 202
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 31/162 (19%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83
G ++L L + + YG+ GP+GCGK+TL I +D + R +
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAI-ANGQVDGFPTQEECRTVYVEHDI 504
Query: 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
SD + + + +E + F TD+ I +
Sbjct: 505 DGTHSDTSVL--DFVFESGVGTKEAIKDKLIEFGFTDEXIAXP----------------I 546
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
ALSGG + +++ A ++L N +L+LDEPT LD + + W
Sbjct: 547 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTV--NVAW 586
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGGQ+ ++ A P L++LDEPT LD + LKE G IIIT
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIIT 955
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRET-FRY 107
++GP+G GK+TL+N + G +G + + I Y+ Q H E + +T Y
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYT--HENCRIAYIKQHAFAHIESHLDKTPSEY 760
Query: 108 YGYMFDMTDDQ 118
+ F +D+
Sbjct: 761 IQWRFQTGEDR 771
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-E 92
VLK +N + ++ + G +G GKT+LL I+G G IK S R I + Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFS 108
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-----AKK---IVG---- 140
+ G +I+E G +D E R + ++K +L A+K ++G
Sbjct: 109 WIMPG--TIKENI-IAGVSYD------EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
LSGGQ+ RIS A ++ + L +LD P LD + + I++ + KT I+ T
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 201 IEEAKGAHNI 210
+E K A I
Sbjct: 220 MEHLKKADKI 229
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 26/190 (13%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-E 92
VLK +N + ++ + G +G GKT+LL I+G G IK S R I + Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFS 108
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-----AKK---IVG---- 140
+ G +I+E +G +D E R + ++K +L A+K ++G
Sbjct: 109 WIMPG--TIKENI-IFGVSYD------EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 159
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
LS GQQ +IS A ++ + L +LD P LD + + I++ + KT I+ T
Sbjct: 160 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 201 IEEAKGAHNI 210
+E K A I
Sbjct: 220 MEHLKKADKI 229
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 30/231 (12%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS-- 79
V+ AY N VL+GL + K+ L+GP+G GK+T+ + G + L
Sbjct: 22 VSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGE 81
Query: 80 ----------FRQISDIGYMPQELALHGELSIRETFRY----YGYMFDMTDDQIETRSKE 125
Q++ +G QE L G S RE Y M ++T +E+ + +
Sbjct: 82 PLVQYDHHYLHTQVAAVG---QEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHD 137
Query: 126 ILKLLELPPAKKI-VG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
+ P VG L+ GQ++ ++ A +L+ P+LLILD T LD +Q+
Sbjct: 138 FIS--GFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALD-AGNQLR 194
Query: 181 WDRL--KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
RL + +T+++ T + A+ AH+I +++ + H ++E
Sbjct: 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSI 101
+ + ++ G++GP+G GKTT + + G G I+ + Y PQ + E ++
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDL----TVAYKPQYIKADYEGTV 364
Query: 102 RETFRYYGYMFDMTDDQIETRSKEILKLLEL-PPAKKIVGALSGGQQRRISFAVSLLHNP 160
E D + E+LK L + + V LSGG+ +R++ A +LL +
Sbjct: 365 YELLS----KIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDA 420
Query: 161 KLLILDEPTVGLD 173
+ +LDEP+ LD
Sbjct: 421 DIYLLDEPSAYLD 433
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 23/177 (12%)
Query: 42 VPENKIYGLLGPSGCGKTTLLNCIVGR--------NTLDAGTIKLSFRQISDIGYMPQEL 93
V E + G++GP+G GK+T + + G+ N G I+ +FR Y E
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIR-AFRGNELQNYF--EK 100
Query: 94 ALHGELSIRETFRYY--------GYMFDMTDDQIET-RSKEILKLLELPPA-KKIVGALS 143
+GE+ +Y G + ++ ET + +E++K LEL ++ + LS
Sbjct: 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLS 160
Query: 144 GGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR-LKEMALNGKTIIITTH 199
GG+ +R++ A +LL N DEP+ LD I ++ R ++ ++ GK++++ H
Sbjct: 161 GGELQRVAIAAALLRNATFYFFDEPSSYLD-IRQRLNAARAIRRLSEEGKSVLVVEH 216
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 27/190 (14%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-E 92
VLK +N + ++ + G +G GKT+LL I+G G IK S R I + Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFS 108
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-----AKK---IVG---- 140
+ G +I+E G +D E R + ++K +L A+K ++G
Sbjct: 109 WIMPG--TIKENI--IGVSYD------EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGI 158
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
LS GQQ +IS A ++ + L +LD P LD + + I++ + KT I+ T
Sbjct: 159 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 201 IEEAKGAHNI 210
+E K A I
Sbjct: 219 MEHLKKADKI 228
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETF 105
++ G++GP+G GKTT + + G G ++ + Y PQ + E ++ E
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----TVAYKPQYIKAEYEGTVYELL 438
Query: 106 RYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164
D + E+LK L + + V LSGG+ +R++ A +LL + + +
Sbjct: 439 S----KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYL 494
Query: 165 LDEPTVGLDPILSQIIWDRLKE-MALNGKTIIITTH 199
LDEP+ LD + ++ M N KT ++ H
Sbjct: 495 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 28/190 (14%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR-------NTLDAGTIKLSFRQI 83
N VL L + V + + G++GP+G GKTT + + G+ + + +FR
Sbjct: 104 NAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE------------ 131
Y E +GE+ +Y D+ ++ + +E+LK ++
Sbjct: 163 ELQNYF--ERLKNGEIRPVVKPQY----VDLLPKAVKGKVRELLKKVDEVGKFEEVVKEL 216
Query: 132 --LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+ + LSGG+ +R++ A +LL DEP+ LD + ++ +A
Sbjct: 217 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 190 NGKTIIITTH 199
GK +++ H
Sbjct: 277 EGKAVLVVEH 286
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETF 105
++ G++GP+G GKTT + + G G ++ + Y PQ + E ++ E
Sbjct: 369 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----TVAYKPQYIKAEYEGTVYELL 424
Query: 106 RYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164
D + E+LK L + + V LSGG+ +R++ A +LL + + +
Sbjct: 425 S----KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYL 480
Query: 165 LDEPTVGLDPILSQIIWDRLKE-MALNGKTIIITTH 199
LDEP+ LD + ++ M N KT ++ H
Sbjct: 481 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 28/190 (14%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR-------NTLDAGTIKLSFRQI 83
N VL L + V + + G++GP+G GKTT + + G+ + + +FR
Sbjct: 90 NAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 148
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE------------ 131
Y E +GE+ +Y D+ ++ + +E+LK ++
Sbjct: 149 ELQNYF--ERLKNGEIRPVVKPQY----VDLLPKAVKGKVRELLKKVDEVGKFEEVVKEL 202
Query: 132 --LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+ + LSGG+ +R++ A +LL DEP+ LD + ++ +A
Sbjct: 203 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 262
Query: 190 NGKTIIITTH 199
GK +++ H
Sbjct: 263 EGKAVLVVEH 272
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 110/242 (45%), Gaps = 28/242 (11%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTT-------LLNCIVGRNTLDAG 74
V+ AY + +VL+GL + ++ L+GP+G GK+T L G+ LD
Sbjct: 20 VSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGK 79
Query: 75 TI-----KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
+ + RQ++ +G PQ + +I M ++T +++ + +
Sbjct: 80 PLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISG 139
Query: 130 LELPPAKKIVGA---LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP----ILSQIIWD 182
L ++ A LSGGQ++ ++ A +L+ P +LILD+ T LD + Q++++
Sbjct: 140 LPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 199
Query: 183 RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE------SLVEALE 236
+ + +++++ T ++ + A +I + H ++E ++V+A
Sbjct: 200 SPERYS---RSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQAPA 256
Query: 237 DA 238
DA
Sbjct: 257 DA 258
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 28/166 (16%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY 88
+ ++ ++L++ ++ ++GP+G GK+TLL + G + G L + ++ +
Sbjct: 21 VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNS--W 78
Query: 89 MPQELA-----------LHGELSIRETFRY----YGYMFDMTDDQIETRSKEILKLLELP 133
P+ LA L S+ E + YG D Q + L L
Sbjct: 79 QPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLAL---- 134
Query: 134 PAKKIVGALSGGQQRRISFAVSLLH------NPKLLILDEPTVGLD 173
A++ LSGG+Q+R+ A L P+ L LDEPT LD
Sbjct: 135 -AQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALD 179
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 20/217 (9%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+++ + + L L+ V +I L+GP+G GK+TLL + G T G+I+ +
Sbjct: 1 MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFA 59
Query: 80 FRQISDIGYMPQELALH-GELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPPA-- 135
+ + + +LALH LS ++T + ++ +T Q + E+L + A
Sbjct: 60 GQPLE--AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD 117
Query: 136 ---KKIVGALSGGQQRRISFAVSLLH-----NP--KLLILDEPTVGLDPILSQIIWDR-L 184
+ LSGG+ +R+ A +L NP +LL+LD+P LD + Q D+ L
Sbjct: 118 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLD-VAQQSALDKIL 176
Query: 185 KEMALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIG 220
++ G I++++H + + AH L++ + +
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA 213
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 8/168 (4%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI-GYMPQEL 93
L+ +NL V K+ +LGP+G GKTTLL I G +G I ++ ++ I Y+
Sbjct: 21 LENINLEVNGEKVI-ILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEVRKIRNYIRYST 78
Query: 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA--KKIVGALSGGQQRRIS 151
L I T Y+++ E+LK L+L ++ + LS GQ +
Sbjct: 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVR 138
Query: 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+++L P+++ LDEP +D +I +KE GK I+ TH
Sbjct: 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTH 183
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 20/193 (10%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH- 96
L+ V +I L+GP+G GK+TLL G T G+I+ + + + + +LALH
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSGKGSIQFAGQPLE--AWSATKLALHR 75
Query: 97 GELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPPA-----KKIVGALSGGQQRRI 150
LS ++T + ++ +T Q + E+L + A + LSGG+ +R+
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 135
Query: 151 SFAVSLLH-----NP--KLLILDEPTVGLDPILSQIIWDR-LKEMALNGKTIIITTHYIE 202
A +L NP +LL+LDEP LD + Q D+ L ++ G I+ ++H +
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDEPXNSLD-VAQQSALDKILSALSQQGLAIVXSSHDLN 194
Query: 203 EA-KGAHNIGLMR 214
+ AH L++
Sbjct: 195 HTLRHAHRAWLLK 207
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 20/199 (10%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH- 96
L+ V +I L+GP+G GK+TLL + G T G+I+ + + + + +LALH
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLE--AWSATKLALHR 75
Query: 97 GELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPPA-----KKIVGALSGGQQRRI 150
LS ++T + ++ +T Q + E+L + A + LSGG+ +R+
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 135
Query: 151 SFAVSLLH-----NP--KLLILDEPTVGLDPILSQIIWDR-LKEMALNGKTIIITTHYIE 202
A +L NP +LL+LD+P LD + Q D+ L ++ G I++++H +
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDQPMNSLD-VAQQSALDKILSALSQQGLAIVMSSHDLN 194
Query: 203 EA-KGAHNIGLMRDDQYIG 220
+ AH L++ + +
Sbjct: 195 HTLRHAHRAWLLKGGKMLA 213
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 20/210 (9%)
Query: 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80
++ + + L L+ V +I L+GP+G GK+TLL G T G+I+ +
Sbjct: 2 SIVXQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAG-XTSGKGSIQFAG 60
Query: 81 RQISDIGYMPQELALH-GELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPPA--- 135
+ + + +LALH LS ++T + ++ +T Q + E+L + A
Sbjct: 61 QPLE--AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDD 118
Query: 136 --KKIVGALSGGQQRRISFAVSLLH-----NP--KLLILDEPTVGLDPILSQIIWDR-LK 185
+ LSGG+ +R+ A +L NP +LL+LDEP LD + Q D+ L
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLD-VAQQSALDKILS 177
Query: 186 EMALNGKTIIITTHYIEEA-KGAHNIGLMR 214
+ G I+ ++H + + AH L++
Sbjct: 178 ALCQQGLAIVXSSHDLNHTLRHAHRAWLLK 207
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 110/244 (45%), Gaps = 22/244 (9%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT--IKLSFRQISDIGYMPQELALHGELSI 101
+++I ++G +G GKTTL+ + G D G KL ++ PQ++A ++
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQKIAPKFPGTV 430
Query: 102 RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPK 161
R+ F + + Q +T + L++ ++ + V LSGG+ +R++ ++L
Sbjct: 431 RQLF-FKKIRGQFLNPQFQTDVVKPLRIDDI--IDQEVQHLSGGELQRVAIVLALGIPAD 487
Query: 162 LLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTH-YIEEAKGAHNIGLMRDDQYI 219
+ ++DEP+ LD I ++ L N KT I H +I A + + +
Sbjct: 488 IYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVF--EGIP 545
Query: 220 GRLVHHDIVESLVEALEDALRHGNVINKVDLVDGRGSIDEVLSRQCTVSVDVDRPAINEG 279
+ H ESL+ L++ NV + D R I+++ S+ +D+ + G
Sbjct: 546 SKNAHARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRINKLDSQ-------MDKEQKSSG 598
Query: 280 DYVW 283
+Y +
Sbjct: 599 NYFF 602
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 75/184 (40%), Gaps = 23/184 (12%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+II + ++ ++ N L L P ++ GL+G +G GK+T L + G+
Sbjct: 71 QIINLPTNLEAHVTHRYSANSFKLHRLPTPRP-GQVLGLVGTNGIGKSTALKILAGKQKP 129
Query: 72 DAG---------TIKLSFRQISDIGYMPQELALHGELSIRETF------------RYYGY 110
+ G I FR Y + L + I+ + + G
Sbjct: 130 NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGE 189
Query: 111 MFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169
+ + ++ K +K+L+L K+ + LSGG+ +R + +S + + + DEP+
Sbjct: 190 LLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS 249
Query: 170 VGLD 173
LD
Sbjct: 250 SYLD 253
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 74 GTIKLSFRQISDIGYMPQELALHGELSIRETFR--YYGY----MFDMT-DDQIE------ 120
G IK+ + D+ Y+P E+ HG+ RET Y G + DMT +D ++
Sbjct: 461 GIIKIEMHFLPDV-YVPCEVC-HGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP 518
Query: 121 --TRSKEILKLLELPPAK--KIVGALSGGQQRRISFAVSLLHNPK---LLILDEPTVGLD 173
R E L + L K + LSGG+ +R+ A L L ILDEPT GL
Sbjct: 519 KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLH 578
Query: 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210
+ D L + NG T+++ H ++ K A I
Sbjct: 579 VDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYI 615
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 137 KIVGALSGGQQRRISFAVSLLHNPK--LLILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
+ G LSGG+ +RI A + L +LDEP++GL + + LK M G T+
Sbjct: 198 RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 257
Query: 195 IITTH 199
I+ H
Sbjct: 258 IVVEH 262
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 74 GTIKLSFRQISDIGYMPQELALHGELSIRETFR--YYGY----MFDMT-DDQIE------ 120
G IK+ + D+ Y+P E+ HG+ RET Y G + DMT +D ++
Sbjct: 763 GIIKIEMHFLPDV-YVPCEVC-HGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP 820
Query: 121 --TRSKEILKLLELPPAK--KIVGALSGGQQRRISFAVSLLHNPK---LLILDEPTVGLD 173
R E L + L K + LSGG+ +R+ A L L ILDEPT GL
Sbjct: 821 KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLH 880
Query: 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210
+ D L + NG T+++ H ++ K A I
Sbjct: 881 VDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYI 917
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 139 VGALSGGQQRRISFAVSLLHNPK--LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
G LSGG+ +RI A + L +LDEP++GL + + LK M G T+I+
Sbjct: 502 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 561
Query: 197 TTH 199
H
Sbjct: 562 VEH 564
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 141 ALSGGQQRRISFAVSLLHNPK--LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITT 198
LSGG+ +RI A + + +LDEPT+GL P ++ + LK++ G T+I+
Sbjct: 464 TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523
Query: 199 HYIEEAKGAHNI 210
H E + A +I
Sbjct: 524 HDEEVIRNADHI 535
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 141 ALSGGQQRRISFAVSLLHNPK---LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGG+ +RI A L L ILDEPTVGL + + + L + G T+I+
Sbjct: 805 TLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVI 864
Query: 198 THYIEEAKGAHNI 210
H ++ K A +I
Sbjct: 865 EHNLDVIKNADHI 877
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 142 LSGGQQRRISFAVSLLHNPK---LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITT 198
LSGG+ +RI A L + + + +LDEPT GL P + + +L ++ G T+I
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 199 HYIE 202
H ++
Sbjct: 791 HKMQ 794
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 142 LSGGQQRRISFAVSLLHN--PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LS G+ +R+ A L N + +LDEP+ GL P ++ + L+ + G ++ + H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 142 LSGGQQRRISFAVSLLHNPK---LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITT 198
LSGG+ +R+ A L L ILDEPT GL + D L + NG T+++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 199 HYIEEAKGAHNI 210
H ++ K A I
Sbjct: 906 HNLDVIKTADYI 917
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 139 VGALSGGQQRRISFAVSLLHNPK--LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
G LSGG+ +RI A + L +LDEP++GL + + LK G T+I+
Sbjct: 502 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIV 561
Query: 197 TTH 199
H
Sbjct: 562 VEH 564
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 21/148 (14%)
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRR 149
P+E A+ G++ ++E G++ D+ L+ L L + LSGG+ +R
Sbjct: 485 PREQAIAGQV-LKEIRSRLGFLLDVG-----------LEYLSL---SRAAATLSGGEAQR 529
Query: 150 ISFAVSLLHN--PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH---YIEEA 204
I A + L +LDEP++GL ++ + + L + G T+I+ H IE A
Sbjct: 530 IRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHA 589
Query: 205 KGAHNIGLMRDDQYIGRLVHHDIVESLV 232
+IG ++ GR+VH + L+
Sbjct: 590 DWIVDIG-PGAGEHGGRIVHSGPYDELL 616
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 142 LSGGQQRRISFAVSLLHNPK---LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITT 198
LSGG+ +R+ A L + ILDEPT GL + + + + + G T+I+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 199 HYIE 202
H ++
Sbjct: 924 HNLD 927
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67
L+G++++ P + + G SG GK+TL+N I+
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILA 690
>pdb|2ID2|A Chain A, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|B Chain B, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|C Chain C, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|D Chain D, Gapn T244s Mutant X-Ray Structure At 2.5 A
Length = 475
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 167 EPTVGLD----PILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG--LMRDDQYIG 220
EP G + P +S D + A + YIE A H + LMRD + IG
Sbjct: 24 EPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIG 83
Query: 221 RLVHHDIVESLVEALEDALRHGNVIN 246
++ ++ + A+ + +R +IN
Sbjct: 84 AILSKEVAKGYKSAVSEVVRTAEIIN 109
>pdb|2ESD|A Chain A, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2ESD|B Chain B, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2ESD|C Chain C, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2ESD|D Chain D, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2QE0|A Chain A, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement.
pdb|2QE0|B Chain B, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement.
pdb|2QE0|C Chain C, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement.
pdb|2QE0|D Chain D, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement
Length = 475
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 167 EPTVGLD----PILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG--LMRDDQYIG 220
EP G + P +S D + A + YIE A H + LMRD + IG
Sbjct: 24 EPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIG 83
Query: 221 RLVHHDIVESLVEALEDALRHGNVIN 246
++ ++ + A+ + +R +IN
Sbjct: 84 AILSKEVAKGYKSAVSEVVRTAEIIN 109
>pdb|1EUH|A Chain A, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|B Chain B, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|C Chain C, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|D Chain D, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|2EUH|A Chain A, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|B Chain B, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|C Chain C, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|D Chain D, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|1QI6|A Chain A, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|B Chain B, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|C Chain C, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|D Chain D, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
Length = 475
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 167 EPTVGLD----PILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG--LMRDDQYIG 220
EP G + P +S D + A + YIE A H + LMRD + IG
Sbjct: 24 EPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIG 83
Query: 221 RLVHHDIVESLVEALEDALRHGNVIN 246
++ ++ + A+ + +R +IN
Sbjct: 84 AILSKEVAKGYKSAVSEVVRTAEIIN 109
>pdb|1QI1|A Chain A, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|B Chain B, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|C Chain C, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|D Chain D, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
Length = 475
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 167 EPTVGLD----PILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG--LMRDDQYIG 220
EP G + P +S D + A + YIE A H + LMRD + IG
Sbjct: 24 EPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIG 83
Query: 221 RLVHHDIVESLVEALEDALRHGNVIN 246
++ ++ + A+ + +R +IN
Sbjct: 84 AILSKEVAKGYKSAVSEVVRTAEIIN 109
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 50 LLGPSGCGKTTLLNCI-VGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFR-Y 107
+LG G GKTT+L + +G TI + +S L G+ SIR +R Y
Sbjct: 23 ILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCY 82
Query: 108 YG------YMFDMTD-DQIETRSKEILKLL---ELPPAKKIVGA 141
Y ++ D TD D++ T SKE+ +L EL A +V A
Sbjct: 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA 126
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 50 LLGPSGCGKTTLLNCI-VGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFR-Y 107
+LG G GKTT+L + VG TI + ++ Q L G+ SIR +R Y
Sbjct: 7 ILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCY 66
Query: 108 YG------YMFDMTD-DQIETRSKEILKLLELPPAKKIVGALSGGQQ 147
Y Y+ D D D+I E++ +LE +K + + +Q
Sbjct: 67 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQ 113
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 142 LSGGQQ------RRISFAVSLLHNP-KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
LSGG+Q R++ A +L+ N + +ILDEPTV LD + + +++ + I
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 195 IITTH 199
IIT H
Sbjct: 341 IITHH 345
>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
Hedgehog N-Terminal Signalling Domain
Length = 187
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190
+NP ++ DE G D +++Q DRL +A++
Sbjct: 70 YNPDIIFKDEKNTGADRLMTQRCKDRLNSLAIS 102
>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal
Signalling Domain
Length = 187
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190
+NP ++ DE G D +++Q DRL +A++
Sbjct: 70 YNPDIIFKDEENTGADRLMTQRCKDRLNSLAIS 102
>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190
+NP ++ DE G D +++Q DRL +A++
Sbjct: 70 YNPDIIFKDEENTGADRLMTQRCKDRLNSLAIS 102
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp
Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp
Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein
(Adpnp-Adp Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein
(Adpnp-Adp Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein
(Adpnp-Adp Complexes)
Length = 412
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ 82
N IYG +G G GKTTL V R + A L+ +Q
Sbjct: 52 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQ 89
>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|B Chain B, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1M|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1O|A Chain A, Crystal Structure Of Ihhn
pdb|3N1O|B Chain B, Crystal Structure Of Ihhn
pdb|3N1O|C Chain C, Crystal Structure Of Ihhn
pdb|3N1P|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 169
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190
+NP ++ DE G D +++Q DRL +A++
Sbjct: 61 YNPDIIFKDEENTGADRLMTQRCKDRLNSLAIS 93
>pdb|3DHA|A Chain A, An Ultral High Resolution Structure Of N-Acyl Homoserine
Lactone Hydrolase With The Product
N-Hexanoyl-L-Homoserine Bound At An Alternative Site
pdb|3DHB|A Chain A, 1.4 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homoserine Bound
At The Catalytic Metal Center
pdb|3DHC|A Chain A, 1.3 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homocysteine
Bound To The Catalytic Metal Center
Length = 254
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGA 207
P G DP L+ RLKE+ K II H IE+ K
Sbjct: 208 PFAGFDPELALSSIKRLKEVVKKEKPIIFFGHDIEQEKSC 247
>pdb|2BR6|A Chain A, Crystal Structure Of Quorum-Quenching N-Acyl Homoserine
Lactone Lactonase
pdb|2BTN|A Chain A, Crystal Structure And Catalytic Mechanism Of The Quorum-
Quenching N-Acyl Homoserine Lactone Hydrolase
Length = 252
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGA 207
P G DP L+ RLKE+ K II H IE+ K
Sbjct: 206 PFAGFDPELALSSIKRLKEVVKKEKPIIFFGHDIEQEKSC 245
>pdb|2A7M|A Chain A, 1.6 Angstrom Resolution Structure Of The Quorum-Quenching
N-Acyl Homoserine Lactone Hydrolase Of Bacillus
Thuringiensis
Length = 250
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGA 207
P G DP L+ RLKE+ K II H IE+ K
Sbjct: 204 PFAGFDPELALSSIKRLKEVVKKEKPIIFFGHDIEQEKSC 243
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 50 LLGPSGCGKTTLLNCI-VGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFR-Y 107
+LG G GKTT+L + VG TI + ++ Q L G SIR +R Y
Sbjct: 9 ILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCY 68
Query: 108 YG------YMFDMTD-DQIETRSKEILKLLELPPAKKIVGALSGGQQ 147
Y Y+ D D D+I E++ +LE +K + + +Q
Sbjct: 69 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQ 115
>pdb|1XEW|Y Chain Y, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 130 LELPPAKKIVG---ALSGGQQRRIS----FAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
+E PA K V A+SGG++ + FA+ + DE LD + + D
Sbjct: 49 IEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD 108
Query: 183 RLKEMALNGKTIIITTHYIEEAKGAHNIGL-MRD 215
+KE + + I+IT + A IG+ MRD
Sbjct: 109 LIKESSKESQFIVITLRDVMMANADKIIGVSMRD 142
>pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
FadNADP+ Domain At 1.9a Resolution
Length = 435
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 224 HHDIVESLVEALEDALRHGNVINKVDLVDGRGSIDEVLS 262
H D+V +L+E LEDA +V+ KV++++ R + V+S
Sbjct: 78 HEDLVNALIERLEDAPPANHVV-KVEMLEERNTALGVIS 115
>pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And
Magnesium
Length = 264
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 33/133 (24%)
Query: 130 LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS-QIIW------- 181
LE + G G+ + + + L NP+ L DE V + + ++
Sbjct: 37 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTF 96
Query: 182 --DRLKEMA----LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEAL 235
+R+ +MA ++G+T++ D+ ++ R + D+ E +
Sbjct: 97 RPERIMQMAEHAGIDGQTVL-------------------DNTFVARAYNSDMQMLFAEKI 137
Query: 236 EDALRHGNVINKV 248
ED ++ GN I V
Sbjct: 138 EDLIQEGNNIKLV 150
>pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution.
pdb|1TLL|B Chain B, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution
Length = 688
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 224 HHDIVESLVEALEDALRHGNVINKVDLVDGRGSIDEVLS 262
H D+V +L+E LEDA +V+ KV++++ R + V+S
Sbjct: 299 HEDLVNALIERLEDAPPANHVV-KVEMLEERNTALGVIS 336
>pdb|4DC9|A Chain A, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|B Chain B, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|C Chain C, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|D Chain D, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|E Chain E, Hexameric Ring Of Methanococcus Voltae Rada
pdb|4DC9|F Chain F, Hexameric Ring Of Methanococcus Voltae Rada
Length = 266
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 33/133 (24%)
Query: 130 LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS-QIIW------- 181
LE + G G+ + + + L NP+ L DE V + + ++
Sbjct: 39 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTF 98
Query: 182 --DRLKEMA----LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEAL 235
+R+ +MA ++G+T++ D+ ++ R + D+ E +
Sbjct: 99 RPERIMQMAEHAGIDGQTVL-------------------DNTFVARAYNSDMQMLFAEKI 139
Query: 236 EDALRHGNVINKV 248
ED ++ GN I V
Sbjct: 140 EDLIQEGNNIKLV 152
>pdb|1T4G|A Chain A, Atpase In Complex With Amp-pnp
pdb|1XU4|A Chain A, Atpase In Complex With Amp-Pnp, Magnesium And Potassium
Co-F
pdb|2FPK|A Chain A, Rada Recombinase In Complex With Adp
pdb|2FPL|A Chain A, Rada Recombinase In Complex With Amp-Pnp And Low
Concentration Of K+
pdb|2FPM|A Chain A, Rada Recombinase In Complex With Amp-Pnp And High
Concentration Of K+
pdb|2B21|A Chain A, Rada Recombinase In Complex With Amppnp At Ph 6.0
pdb|2I1Q|A Chain A, Rada Recombinase In Complex With Calcium
pdb|3FYH|A Chain A, Recombinase In Complex With Adp And Metatungstate
Length = 322
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 33/133 (24%)
Query: 130 LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS-QIIW------- 181
LE + G G+ + + + L NP+ L DE V + + ++
Sbjct: 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTF 154
Query: 182 --DRLKEMA----LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEAL 235
+R+ +MA ++G+T++ D+ ++ R + D+ E +
Sbjct: 155 RPERIMQMAEHAGIDGQTVL-------------------DNTFVARAYNSDMQMLFAEKI 195
Query: 236 EDALRHGNVINKV 248
ED ++ GN I V
Sbjct: 196 EDLIQEGNNIKLV 208
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77
K L L P + L GP GCGKT L + + L+ ++K
Sbjct: 36 FKALGLVTPAGVL--LAGPPGCGKTLLAKAVANESGLNFISVK 76
>pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp
Length = 319
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 33/133 (24%)
Query: 130 LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS-QIIW------- 181
LE + G G+ + + + L NP+ L DE V + + ++
Sbjct: 92 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTF 151
Query: 182 --DRLKEMA----LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEAL 235
+R+ +MA ++G+T++ D+ ++ R + D+ E +
Sbjct: 152 RPERIMQMAEHAGIDGQTVL-------------------DNTFVARAYNSDMQMLFAEKI 192
Query: 236 EDALRHGNVINKV 248
ED ++ GN I V
Sbjct: 193 EDLIQEGNNIKLV 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,766,478
Number of Sequences: 62578
Number of extensions: 360964
Number of successful extensions: 1593
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1341
Number of HSP's gapped (non-prelim): 179
length of query: 291
length of database: 14,973,337
effective HSP length: 98
effective length of query: 193
effective length of database: 8,840,693
effective search space: 1706253749
effective search space used: 1706253749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)