Query psy6612
Match_columns 291
No_of_seqs 297 out of 2223
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 22:35:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6612.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6612hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 2.9E-66 6.2E-71 448.4 24.6 212 19-230 2-226 (240)
2 COG1125 OpuBA ABC-type proline 100.0 2.2E-62 4.8E-67 432.7 22.7 217 19-235 1-231 (309)
3 COG1135 AbcC ABC-type metal io 100.0 1.4E-61 2.9E-66 438.2 23.8 213 19-231 1-233 (339)
4 COG1116 TauB ABC-type nitrate/ 100.0 1.5E-60 3.2E-65 422.3 24.5 203 18-220 2-213 (248)
5 COG1120 FepC ABC-type cobalami 100.0 4.1E-60 8.8E-65 425.4 24.6 222 19-242 2-239 (258)
6 COG1127 Ttg2A ABC-type transpo 100.0 9.9E-60 2.1E-64 413.3 24.8 224 17-240 6-246 (263)
7 COG3842 PotA ABC-type spermidi 100.0 1.7E-59 3.6E-64 438.1 23.6 228 17-244 3-242 (352)
8 COG3839 MalK ABC-type sugar tr 100.0 3.8E-59 8.3E-64 433.6 24.7 215 18-232 2-226 (338)
9 COG4555 NatA ABC-type Na+ tran 100.0 9E-60 2E-64 403.6 17.2 212 19-230 1-223 (245)
10 COG1136 SalX ABC-type antimicr 100.0 2.5E-58 5.5E-63 406.5 25.5 200 19-218 1-220 (226)
11 COG1131 CcmA ABC-type multidru 100.0 4.3E-58 9.3E-63 423.7 27.4 213 18-230 3-227 (293)
12 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 8E-58 1.7E-62 408.9 26.5 220 18-240 3-236 (254)
13 PRK13537 nodulation ABC transp 100.0 1.7E-57 3.7E-62 422.2 29.0 214 16-229 4-227 (306)
14 COG3638 ABC-type phosphate/pho 100.0 7E-58 1.5E-62 400.6 22.6 220 18-240 2-245 (258)
15 PRK13536 nodulation factor exp 100.0 3.2E-56 6.9E-61 419.0 29.6 213 17-229 39-261 (340)
16 TIGR02314 ABC_MetN D-methionin 100.0 2.4E-56 5.3E-61 419.9 28.4 211 19-229 1-230 (343)
17 PRK11650 ugpC glycerol-3-phosp 100.0 2.8E-56 6E-61 421.8 28.4 212 19-230 3-225 (356)
18 COG1118 CysA ABC-type sulfate/ 100.0 3.2E-57 6.9E-62 409.1 20.7 212 19-230 2-228 (345)
19 PRK11432 fbpC ferric transport 100.0 5.1E-56 1.1E-60 419.2 29.1 214 17-230 4-227 (351)
20 COG1124 DppF ABC-type dipeptid 100.0 1.8E-56 4E-61 393.7 23.0 211 18-230 2-232 (252)
21 TIGR03265 PhnT2 putative 2-ami 100.0 9E-56 1.9E-60 417.9 29.3 212 19-230 4-225 (353)
22 COG2884 FtsE Predicted ATPase 100.0 9.7E-57 2.1E-61 381.8 20.0 205 19-223 1-220 (223)
23 COG1117 PstB ABC-type phosphat 100.0 1.7E-56 3.6E-61 386.6 20.1 213 18-232 6-240 (253)
24 TIGR03258 PhnT 2-aminoethylpho 100.0 2.2E-55 4.7E-60 416.3 28.9 212 19-230 5-229 (362)
25 TIGR01288 nodI ATP-binding ABC 100.0 3.1E-55 6.7E-60 406.4 29.0 212 18-229 3-224 (303)
26 COG4152 ABC-type uncharacteriz 100.0 1.8E-56 4E-61 392.9 19.5 212 19-230 2-220 (300)
27 PRK09452 potA putrescine/sperm 100.0 3.7E-55 8E-60 416.3 29.5 216 16-231 11-236 (375)
28 cd03261 ABC_Org_Solvent_Resist 100.0 5.3E-55 1.2E-59 390.1 27.9 209 20-228 1-225 (235)
29 PRK10851 sulfate/thiosulfate t 100.0 8E-55 1.7E-59 411.4 29.5 212 19-230 2-227 (353)
30 COG1122 CbiO ABC-type cobalt t 100.0 2.9E-55 6.3E-60 391.9 24.7 212 18-230 2-229 (235)
31 cd03265 ABC_DrrA DrrA is the A 100.0 7.4E-55 1.6E-59 385.6 26.8 207 20-226 1-218 (220)
32 TIGR00960 3a0501s02 Type II (G 100.0 5.4E-55 1.2E-59 385.2 25.5 200 19-218 1-216 (216)
33 cd03259 ABC_Carb_Solutes_like 100.0 6.7E-55 1.5E-59 383.8 25.5 203 20-222 1-213 (213)
34 PRK11000 maltose/maltodextrin 100.0 1.3E-54 2.8E-59 412.4 29.3 212 19-230 3-224 (369)
35 PRK11607 potG putrescine trans 100.0 1.8E-54 3.8E-59 412.1 29.6 214 17-230 17-240 (377)
36 TIGR03522 GldA_ABC_ATP gliding 100.0 1.8E-54 4E-59 401.0 28.9 210 19-229 2-221 (301)
37 TIGR01188 drrA daunorubicin re 100.0 1E-54 2.2E-59 402.8 26.5 203 27-229 1-213 (302)
38 PRK11153 metN DL-methionine tr 100.0 2.1E-54 4.5E-59 407.4 28.8 211 19-229 1-230 (343)
39 cd03296 ABC_CysA_sulfate_impor 100.0 2.6E-54 5.5E-59 386.9 27.9 210 19-228 2-225 (239)
40 cd03218 ABC_YhbG The ABC trans 100.0 3E-54 6.4E-59 384.2 27.9 210 20-229 1-222 (232)
41 COG0411 LivG ABC-type branched 100.0 3.1E-55 6.7E-60 386.1 20.4 220 18-239 3-247 (250)
42 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.8E-54 8.1E-59 381.1 27.0 205 20-224 1-218 (220)
43 COG1137 YhbG ABC-type (unclass 100.0 5.1E-56 1.1E-60 380.1 14.4 220 18-239 3-236 (243)
44 PRK11629 lolD lipoprotein tran 100.0 5.9E-54 1.3E-58 383.1 28.4 207 18-224 4-229 (233)
45 cd03266 ABC_NatA_sodium_export 100.0 2.7E-54 5.9E-59 381.0 25.5 203 19-221 1-217 (218)
46 PRK09536 btuD corrinoid ABC tr 100.0 5.7E-54 1.2E-58 411.0 29.5 221 18-240 2-237 (402)
47 cd03219 ABC_Mj1267_LivG_branch 100.0 4.3E-54 9.2E-59 384.1 26.8 208 20-227 1-230 (236)
48 cd03301 ABC_MalK_N The N-termi 100.0 5E-54 1.1E-58 378.0 26.0 203 20-222 1-213 (213)
49 cd03258 ABC_MetN_methionine_tr 100.0 5.2E-54 1.1E-58 383.1 26.5 209 19-227 1-228 (233)
50 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.1E-53 2.4E-58 382.0 28.5 211 19-229 1-221 (236)
51 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.6E-54 7.9E-59 380.2 25.0 199 20-218 1-218 (218)
52 cd03269 ABC_putative_ATPase Th 100.0 8.7E-54 1.9E-58 376.0 26.2 202 20-221 1-209 (210)
53 COG4175 ProV ABC-type proline/ 100.0 1.2E-54 2.6E-59 393.3 20.7 214 19-232 4-257 (386)
54 TIGR01186 proV glycine betaine 100.0 6.9E-54 1.5E-58 405.7 26.3 204 27-230 1-220 (363)
55 cd03263 ABC_subfamily_A The AB 100.0 1.2E-53 2.5E-58 377.5 25.9 206 20-226 1-218 (220)
56 PRK11831 putative ABC transpor 100.0 2.3E-53 5E-58 387.5 28.4 213 17-229 5-233 (269)
57 TIGR02673 FtsE cell division A 100.0 9.8E-54 2.1E-58 376.5 24.9 199 19-217 1-214 (214)
58 PRK13647 cbiO cobalt transport 100.0 1.9E-53 4.1E-58 389.3 27.5 211 17-227 2-225 (274)
59 PRK09493 glnQ glutamine ABC tr 100.0 2.7E-53 6E-58 380.2 27.9 211 19-229 1-225 (240)
60 TIGR02211 LolD_lipo_ex lipopro 100.0 1.7E-53 3.7E-58 376.7 26.2 201 19-219 1-220 (221)
61 cd03224 ABC_TM1139_LivF_branch 100.0 1.3E-53 2.8E-58 377.4 25.4 206 20-227 1-219 (222)
62 PRK10908 cell division protein 100.0 2.1E-53 4.5E-58 376.8 26.4 202 19-220 1-217 (222)
63 PRK13650 cbiO cobalt transport 100.0 1.6E-53 3.6E-58 390.6 26.6 214 17-230 2-230 (279)
64 PRK10070 glycine betaine trans 100.0 2.1E-53 4.5E-58 406.8 28.4 213 17-229 2-254 (400)
65 PRK13637 cbiO cobalt transport 100.0 3.3E-53 7.2E-58 390.1 28.3 211 19-229 2-234 (287)
66 PRK10895 lipopolysaccharide AB 100.0 3.7E-53 8.1E-58 379.6 27.8 211 19-229 3-226 (241)
67 PRK11264 putative amino-acid A 100.0 3.8E-53 8.3E-58 381.2 27.8 211 19-229 3-233 (250)
68 PRK15079 oligopeptide ABC tran 100.0 3.7E-53 8E-58 397.0 28.5 214 17-230 6-252 (331)
69 TIGR02315 ABC_phnC phosphonate 100.0 2.3E-53 5E-58 380.9 25.9 209 19-227 1-233 (243)
70 cd03256 ABC_PhnC_transporter A 100.0 3.4E-53 7.3E-58 379.2 26.8 209 20-228 1-233 (241)
71 PRK10584 putative ABC transpor 100.0 4.9E-53 1.1E-57 375.6 27.2 204 17-220 4-226 (228)
72 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.1E-53 8.9E-58 379.7 26.9 209 20-228 1-224 (242)
73 PRK11248 tauB taurine transpor 100.0 5.8E-53 1.3E-57 382.3 27.8 206 19-224 1-215 (255)
74 TIGR03411 urea_trans_UrtD urea 100.0 9.6E-53 2.1E-57 376.9 28.7 210 19-229 2-231 (242)
75 PRK13634 cbiO cobalt transport 100.0 4.6E-53 9.9E-58 389.7 27.2 209 20-229 3-235 (290)
76 cd03268 ABC_BcrA_bacitracin_re 100.0 3E-53 6.5E-58 372.0 24.7 198 20-221 1-207 (208)
77 cd03260 ABC_PstB_phosphate_tra 100.0 3.7E-53 8E-58 376.2 25.0 205 20-226 1-226 (227)
78 PRK13643 cbiO cobalt transport 100.0 7.8E-53 1.7E-57 387.8 27.8 210 19-229 1-233 (288)
79 PRK10619 histidine/lysine/argi 100.0 1.4E-52 3.1E-57 379.6 29.0 213 17-229 3-241 (257)
80 PRK11124 artP arginine transpo 100.0 1.1E-52 2.4E-57 376.7 27.8 209 19-227 2-228 (242)
81 PRK13641 cbiO cobalt transport 100.0 8.1E-53 1.8E-57 387.5 27.5 210 19-229 2-234 (287)
82 cd03264 ABC_drug_resistance_li 100.0 5.3E-53 1.1E-57 371.3 24.8 200 20-221 1-210 (211)
83 cd03292 ABC_FtsE_transporter F 100.0 6E-53 1.3E-57 371.2 25.2 199 20-218 1-214 (214)
84 PRK13548 hmuV hemin importer A 100.0 1.9E-52 4.2E-57 379.3 29.1 211 19-229 2-230 (258)
85 PRK11300 livG leucine/isoleuci 100.0 1.7E-52 3.8E-57 378.0 28.5 212 18-229 4-243 (255)
86 PRK13644 cbiO cobalt transport 100.0 7.5E-53 1.6E-57 385.3 26.5 211 19-229 1-224 (274)
87 PRK13651 cobalt transporter AT 100.0 8.5E-53 1.8E-57 390.6 27.1 211 19-230 2-255 (305)
88 TIGR00972 3a0107s01c2 phosphat 100.0 1.7E-52 3.8E-57 376.7 28.2 209 19-229 1-232 (247)
89 PRK11231 fecE iron-dicitrate t 100.0 1.9E-52 4.2E-57 378.3 28.5 219 19-239 2-235 (255)
90 cd03262 ABC_HisP_GlnQ_permease 100.0 7.5E-53 1.6E-57 370.3 25.0 199 20-218 1-213 (213)
91 cd03225 ABC_cobalt_CbiO_domain 100.0 5.5E-53 1.2E-57 370.9 23.9 196 22-217 2-211 (211)
92 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.5E-53 1.2E-57 385.2 24.7 209 21-229 26-250 (269)
93 cd03226 ABC_cobalt_CbiO_domain 100.0 4.8E-53 1E-57 370.2 23.2 194 22-219 2-205 (205)
94 PRK13638 cbiO cobalt transport 100.0 1E-52 2.2E-57 383.5 26.1 211 19-229 1-225 (271)
95 PRK11614 livF leucine/isoleuci 100.0 1.6E-52 3.5E-57 374.6 26.6 210 18-229 4-226 (237)
96 PRK13635 cbiO cobalt transport 100.0 1.6E-52 3.5E-57 384.1 26.9 213 17-229 3-229 (279)
97 PRK11308 dppF dipeptide transp 100.0 3.5E-52 7.6E-57 389.8 28.8 213 18-230 4-245 (327)
98 PRK13636 cbiO cobalt transport 100.0 2.8E-52 6.1E-57 383.2 27.5 212 18-229 4-231 (283)
99 PRK14267 phosphate ABC transpo 100.0 4.7E-52 1E-56 375.0 27.6 212 17-229 2-237 (253)
100 PRK13631 cbiO cobalt transport 100.0 4.4E-52 9.4E-57 388.2 28.2 218 11-229 13-265 (320)
101 PRK11022 dppD dipeptide transp 100.0 5E-52 1.1E-56 388.7 28.5 212 19-230 3-244 (326)
102 PRK13652 cbiO cobalt transport 100.0 4.7E-52 1E-56 380.5 27.6 212 18-229 2-227 (277)
103 PRK13646 cbiO cobalt transport 100.0 4.1E-52 8.9E-57 382.6 27.3 209 20-229 3-235 (286)
104 PRK10575 iron-hydroxamate tran 100.0 7.2E-52 1.6E-56 376.8 28.5 212 18-229 10-237 (265)
105 COG0410 LivF ABC-type branched 100.0 3.1E-52 6.6E-57 364.5 24.9 212 18-230 2-227 (237)
106 COG3840 ThiQ ABC-type thiamine 100.0 7.6E-53 1.7E-57 356.0 20.3 209 19-229 1-219 (231)
107 cd03298 ABC_ThiQ_thiamine_tran 100.0 4.2E-52 9.1E-57 365.5 25.7 200 20-221 1-210 (211)
108 PRK14247 phosphate ABC transpo 100.0 7.5E-52 1.6E-56 373.0 28.0 210 19-229 3-234 (250)
109 cd03235 ABC_Metallic_Cations A 100.0 1.8E-52 4E-57 368.3 23.4 198 22-220 2-211 (213)
110 PRK10253 iron-enterobactin tra 100.0 1E-51 2.2E-56 375.9 28.9 215 15-229 3-233 (265)
111 PRK11247 ssuB aliphatic sulfon 100.0 5.1E-52 1.1E-56 376.7 26.9 202 17-224 10-218 (257)
112 cd03257 ABC_NikE_OppD_transpor 100.0 3.9E-52 8.5E-57 369.1 25.5 203 19-221 1-227 (228)
113 TIGR03410 urea_trans_UrtE urea 100.0 5.3E-52 1.2E-56 369.4 26.2 206 20-228 1-220 (230)
114 PRK14268 phosphate ABC transpo 100.0 9.8E-52 2.1E-56 374.4 27.9 209 18-228 11-241 (258)
115 PRK13633 cobalt transporter AT 100.0 5.9E-52 1.3E-56 380.4 26.5 214 16-229 1-233 (280)
116 TIGR03005 ectoine_ehuA ectoine 100.0 9.7E-52 2.1E-56 372.9 27.4 210 20-229 1-236 (252)
117 PRK10771 thiQ thiamine transpo 100.0 1.1E-51 2.5E-56 368.2 27.3 210 19-230 1-220 (232)
118 PRK13639 cbiO cobalt transport 100.0 1E-51 2.2E-56 377.9 27.4 211 19-229 1-226 (275)
119 TIGR03873 F420-0_ABC_ATP propo 100.0 1.7E-51 3.6E-56 372.4 28.3 210 20-229 2-226 (256)
120 TIGR03415 ABC_choXWV_ATP choli 100.0 3.9E-52 8.4E-57 395.7 25.2 207 23-229 28-254 (382)
121 PRK13649 cbiO cobalt transport 100.0 1.2E-51 2.6E-56 378.0 27.5 209 20-229 3-234 (280)
122 PRK14250 phosphate ABC transpo 100.0 9.5E-52 2.1E-56 371.0 26.1 206 19-229 3-221 (241)
123 PRK09473 oppD oligopeptide tra 100.0 1.8E-51 3.8E-56 385.5 28.8 214 17-230 10-252 (330)
124 PRK13640 cbiO cobalt transport 100.0 9.7E-52 2.1E-56 379.4 26.4 213 17-229 3-232 (282)
125 TIGR02769 nickel_nikE nickel i 100.0 1.6E-51 3.4E-56 374.6 27.5 211 19-229 2-240 (265)
126 PRK13632 cbiO cobalt transport 100.0 8.1E-52 1.8E-56 377.8 25.8 212 18-229 6-231 (271)
127 PRK15112 antimicrobial peptide 100.0 1.1E-51 2.4E-56 376.1 26.4 213 17-229 2-239 (267)
128 TIGR01978 sufC FeS assembly AT 100.0 1.6E-51 3.5E-56 368.7 27.0 207 20-226 1-231 (243)
129 TIGR03740 galliderm_ABC gallid 100.0 1.7E-51 3.6E-56 364.8 26.5 203 20-226 1-210 (223)
130 PRK14242 phosphate transporter 100.0 2.4E-51 5.1E-56 370.4 27.7 209 18-228 5-236 (253)
131 PRK09984 phosphonate/organopho 100.0 2E-51 4.2E-56 373.1 27.3 211 17-227 2-240 (262)
132 PRK13642 cbiO cobalt transport 100.0 1.7E-51 3.6E-56 376.9 26.9 213 17-229 2-229 (277)
133 cd03300 ABC_PotA_N PotA is an 100.0 3E-51 6.5E-56 365.7 27.5 210 20-229 1-220 (232)
134 PRK10762 D-ribose transporter 100.0 1.2E-51 2.5E-56 406.3 27.4 212 17-228 2-229 (501)
135 PRK14273 phosphate ABC transpo 100.0 2.3E-51 5E-56 370.9 27.1 211 17-229 5-238 (254)
136 PRK15093 antimicrobial peptide 100.0 2.7E-51 5.9E-56 384.3 28.6 211 19-229 3-248 (330)
137 PRK13648 cbiO cobalt transport 100.0 2E-51 4.2E-56 374.7 26.3 214 17-230 5-232 (269)
138 PRK14241 phosphate transporter 100.0 5E-51 1.1E-55 369.6 28.1 211 18-229 3-242 (258)
139 PRK14270 phosphate ABC transpo 100.0 6.3E-51 1.4E-55 367.4 28.2 212 16-229 1-235 (251)
140 PRK10744 pstB phosphate transp 100.0 4.8E-51 1E-55 370.3 27.4 212 16-229 10-244 (260)
141 PRK13645 cbiO cobalt transport 100.0 3.7E-51 8.1E-56 376.6 27.1 213 16-229 3-240 (289)
142 PRK11701 phnK phosphonate C-P 100.0 4.7E-51 1E-55 369.8 27.3 214 16-229 3-241 (258)
143 cd03297 ABC_ModC_molybdenum_tr 100.0 3.5E-51 7.6E-56 360.6 25.3 197 20-222 2-214 (214)
144 PRK14256 phosphate ABC transpo 100.0 9.1E-51 2E-55 366.6 28.6 213 16-229 1-236 (252)
145 PRK11144 modC molybdate transp 100.0 4.5E-51 9.7E-56 386.0 27.8 204 19-231 1-220 (352)
146 PRK13549 xylose transporter AT 100.0 2.7E-51 5.9E-56 404.1 27.4 212 17-228 3-231 (506)
147 PRK14269 phosphate ABC transpo 100.0 6.2E-51 1.3E-55 366.6 27.3 209 19-229 2-230 (246)
148 TIGR01277 thiQ thiamine ABC tr 100.0 5.1E-51 1.1E-55 359.5 25.9 202 20-223 1-212 (213)
149 TIGR00968 3a0106s01 sulfate AB 100.0 6.6E-51 1.4E-55 364.7 27.0 210 20-229 1-220 (237)
150 PRK14274 phosphate ABC transpo 100.0 8.6E-51 1.9E-55 368.3 28.1 214 14-229 7-243 (259)
151 PRK09700 D-allose transporter 100.0 3.4E-51 7.4E-56 403.7 27.6 213 17-229 3-234 (510)
152 TIGR02142 modC_ABC molybdenum 100.0 5.6E-51 1.2E-55 385.6 27.8 203 24-230 4-222 (354)
153 cd03299 ABC_ModC_like Archeal 100.0 8.8E-51 1.9E-55 363.4 27.5 209 20-229 1-219 (235)
154 COG4598 HisP ABC-type histidin 100.0 1.4E-52 3E-57 354.1 14.8 213 18-230 5-242 (256)
155 PRK14235 phosphate transporter 100.0 1.1E-50 2.4E-55 369.5 28.2 210 17-228 17-250 (267)
156 TIGR03608 L_ocin_972_ABC putat 100.0 3.8E-51 8.3E-56 357.7 23.6 192 22-213 1-206 (206)
157 PRK14248 phosphate ABC transpo 100.0 1E-50 2.2E-55 369.7 27.1 219 9-229 11-252 (268)
158 PRK15439 autoinducer 2 ABC tra 100.0 7.4E-51 1.6E-55 401.5 28.3 211 15-229 7-229 (510)
159 PRK13547 hmuV hemin importer A 100.0 1.6E-50 3.4E-55 369.8 27.8 211 19-229 1-244 (272)
160 PRK14251 phosphate ABC transpo 100.0 1.6E-50 3.5E-55 364.5 27.5 210 17-228 2-234 (251)
161 PRK14245 phosphate ABC transpo 100.0 2.3E-50 4.9E-55 363.6 28.4 210 18-229 2-234 (250)
162 PRK14239 phosphate transporter 100.0 2E-50 4.3E-55 364.0 27.8 210 18-229 4-236 (252)
163 COG0444 DppD ABC-type dipeptid 100.0 6.9E-51 1.5E-55 371.8 24.6 212 20-231 2-245 (316)
164 PRK14259 phosphate ABC transpo 100.0 2.9E-50 6.2E-55 367.3 27.8 213 14-229 8-253 (269)
165 PRK14240 phosphate transporter 100.0 2.8E-50 6.1E-55 362.8 27.4 208 19-228 3-233 (250)
166 PRK14272 phosphate ABC transpo 100.0 3.7E-50 8E-55 362.2 27.8 210 19-229 4-236 (252)
167 PRK10247 putative ABC transpor 100.0 1E-50 2.2E-55 360.8 23.6 206 15-223 3-221 (225)
168 TIGR02323 CP_lyasePhnK phospho 100.0 2.8E-50 6.2E-55 363.4 26.5 212 18-229 2-238 (253)
169 PRK14262 phosphate ABC transpo 100.0 4.5E-50 9.7E-55 361.5 27.6 209 19-229 3-234 (250)
170 TIGR02982 heterocyst_DevA ABC 100.0 3.2E-50 6.9E-55 356.1 26.1 199 20-218 2-219 (220)
171 COG4525 TauB ABC-type taurine 100.0 5.7E-51 1.2E-55 348.1 19.7 207 19-225 3-220 (259)
172 PRK14249 phosphate ABC transpo 100.0 7.6E-50 1.7E-54 360.4 28.0 211 17-229 2-235 (251)
173 PRK10418 nikD nickel transport 100.0 6.7E-50 1.4E-54 361.6 27.2 208 19-229 4-230 (254)
174 PRK10261 glutathione transport 100.0 2.7E-50 5.8E-55 406.0 27.3 216 14-229 7-258 (623)
175 PRK10261 glutathione transport 100.0 4.7E-50 1E-54 404.2 28.7 212 18-229 312-553 (623)
176 PRK14253 phosphate ABC transpo 100.0 7.3E-50 1.6E-54 359.9 26.7 209 18-228 2-232 (249)
177 PRK15056 manganese/iron transp 100.0 8.5E-50 1.9E-54 364.6 27.4 211 17-228 4-229 (272)
178 COG4181 Predicted ABC-type tra 100.0 6.8E-51 1.5E-55 341.2 18.3 204 18-221 5-227 (228)
179 PRK14255 phosphate ABC transpo 100.0 1.2E-49 2.6E-54 359.1 28.0 211 17-229 3-236 (252)
180 PRK14237 phosphate transporter 100.0 1.4E-49 3E-54 362.3 28.2 212 16-229 17-251 (267)
181 cd03267 ABC_NatA_like Similar 100.0 5E-50 1.1E-54 358.9 24.8 195 27-221 29-235 (236)
182 PRK14261 phosphate ABC transpo 100.0 1.3E-49 2.8E-54 359.3 27.5 212 16-229 3-237 (253)
183 PRK14275 phosphate ABC transpo 100.0 1.3E-49 2.9E-54 366.0 28.0 212 16-229 36-270 (286)
184 PRK11288 araG L-arabinose tran 100.0 9.5E-50 2.1E-54 392.8 28.3 206 18-223 3-223 (501)
185 PRK14244 phosphate ABC transpo 100.0 1.4E-49 3.1E-54 358.6 27.1 207 21-229 7-237 (251)
186 PRK14271 phosphate ABC transpo 100.0 2.3E-49 4.9E-54 362.8 28.6 211 17-229 19-251 (276)
187 PRK14254 phosphate ABC transpo 100.0 1.8E-49 3.9E-54 365.0 28.1 210 16-228 36-268 (285)
188 PRK14258 phosphate ABC transpo 100.0 2.4E-49 5.1E-54 359.5 28.4 211 18-229 6-245 (261)
189 cd03251 ABCC_MsbA MsbA is an e 100.0 6.8E-50 1.5E-54 356.5 24.4 206 20-229 1-225 (234)
190 cd03252 ABCC_Hemolysin The ABC 100.0 3.6E-50 7.7E-55 359.2 22.6 206 20-229 1-225 (237)
191 TIGR02633 xylG D-xylose ABC tr 100.0 8.6E-50 1.9E-54 392.8 27.3 209 19-227 1-228 (500)
192 PRK14236 phosphate transporter 100.0 2.4E-49 5.2E-54 361.6 28.1 211 16-228 22-255 (272)
193 PRK10419 nikE nickel transport 100.0 1.8E-49 3.9E-54 361.9 27.2 210 19-228 3-240 (268)
194 PRK14260 phosphate ABC transpo 100.0 2.2E-49 4.7E-54 359.3 27.5 210 18-229 6-243 (259)
195 PRK13538 cytochrome c biogenes 100.0 8.9E-50 1.9E-54 349.6 24.0 192 19-213 1-202 (204)
196 PRK14238 phosphate transporter 100.0 1.6E-49 3.4E-54 362.8 26.5 211 17-229 22-255 (271)
197 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 5.4E-50 1.2E-54 356.2 22.7 200 20-222 23-224 (224)
198 CHL00131 ycf16 sulfate ABC tra 100.0 3.2E-49 6.9E-54 356.1 27.8 209 17-225 5-237 (252)
199 COG1123 ATPase components of v 100.0 7.4E-50 1.6E-54 388.1 24.9 215 16-230 277-520 (539)
200 PRK10982 galactose/methyl gala 100.0 1.1E-49 2.4E-54 391.3 26.2 206 23-228 2-222 (491)
201 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-49 3.2E-54 393.0 27.1 210 20-229 1-258 (520)
202 TIGR01184 ntrCD nitrate transp 100.0 7.4E-50 1.6E-54 356.5 22.5 191 35-225 1-200 (230)
203 cd03234 ABCG_White The White s 100.0 1.6E-49 3.4E-54 353.1 24.5 204 19-222 3-226 (226)
204 PRK15134 microcin C ABC transp 100.0 1.8E-49 3.9E-54 393.1 27.6 212 18-229 4-246 (529)
205 TIGR02324 CP_lyasePhnL phospho 100.0 2E-49 4.2E-54 351.6 24.8 195 19-213 1-222 (224)
206 COG4559 ABC-type hemin transpo 100.0 7.1E-50 1.5E-54 345.1 20.9 222 19-242 1-241 (259)
207 PRK14246 phosphate ABC transpo 100.0 3.5E-49 7.5E-54 358.0 26.5 213 17-230 8-242 (257)
208 PRK09544 znuC high-affinity zi 100.0 2.7E-49 5.8E-54 357.7 25.7 202 18-229 3-209 (251)
209 PRK13543 cytochrome c biogenes 100.0 2.2E-49 4.8E-54 349.7 24.5 196 17-215 9-212 (214)
210 TIGR03269 met_CoM_red_A2 methy 100.0 2.4E-49 5.2E-54 391.4 27.5 212 17-229 277-517 (520)
211 PRK14243 phosphate transporter 100.0 4E-49 8.8E-54 358.7 26.7 209 18-229 9-248 (264)
212 COG1129 MglA ABC-type sugar tr 100.0 1.5E-49 3.3E-54 383.6 24.7 210 18-227 7-233 (500)
213 PRK14265 phosphate ABC transpo 100.0 7.3E-49 1.6E-53 359.0 27.3 208 19-229 20-258 (274)
214 cd03245 ABCC_bacteriocin_expor 100.0 1.8E-49 3.8E-54 350.8 22.3 194 20-221 3-219 (220)
215 COG1123 ATPase components of v 100.0 3.1E-49 6.7E-54 383.8 26.0 215 17-231 3-246 (539)
216 COG4604 CeuD ABC-type enteroch 100.0 9.2E-51 2E-55 347.2 13.3 222 19-242 1-236 (252)
217 cd03254 ABCC_Glucan_exporter_l 100.0 4E-49 8.7E-54 350.5 24.3 206 19-228 2-225 (229)
218 TIGR02770 nickel_nikD nickel i 100.0 3.9E-49 8.5E-54 351.6 24.1 196 34-229 1-215 (230)
219 PRK15134 microcin C ABC transp 100.0 3.1E-49 6.7E-54 391.4 25.4 212 17-229 273-515 (529)
220 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.9E-49 6.4E-54 353.5 22.8 206 20-229 1-226 (238)
221 PRK09580 sufC cysteine desulfu 100.0 1.3E-48 2.9E-53 351.1 27.0 208 19-226 1-232 (248)
222 PRK14266 phosphate ABC transpo 100.0 1.9E-48 4.1E-53 350.9 27.7 208 19-228 3-233 (250)
223 PRK14263 phosphate ABC transpo 100.0 2.1E-48 4.6E-53 353.6 28.1 210 17-229 6-245 (261)
224 cd03231 ABC_CcmA_heme_exporter 100.0 5.6E-49 1.2E-53 344.0 23.3 188 20-213 1-198 (201)
225 PRK03695 vitamin B12-transport 100.0 7.4E-49 1.6E-53 353.9 24.7 203 21-229 2-222 (248)
226 PRK13540 cytochrome c biogenes 100.0 5.1E-49 1.1E-53 343.8 22.6 189 19-212 1-198 (200)
227 PRK13549 xylose transporter AT 100.0 3.6E-49 7.8E-54 389.1 24.1 211 17-227 257-492 (506)
228 PRK13539 cytochrome c biogenes 100.0 1.1E-48 2.4E-53 343.6 24.1 192 19-215 2-200 (207)
229 cd03253 ABCC_ATM1_transporter 100.0 1.3E-48 2.9E-53 348.6 24.9 206 20-229 1-224 (236)
230 COG3845 ABC-type uncharacteriz 100.0 1.8E-48 3.8E-53 370.6 27.1 207 17-223 2-223 (501)
231 COG4161 ArtP ABC-type arginine 100.0 2.1E-49 4.5E-54 329.9 18.0 211 19-229 2-230 (242)
232 TIGR01257 rim_protein retinal- 100.0 1.1E-48 2.3E-53 426.2 28.9 214 17-230 1935-2160(2272)
233 PRK14252 phosphate ABC transpo 100.0 4.7E-48 1E-52 351.6 27.6 210 17-228 14-248 (265)
234 PRK14257 phosphate ABC transpo 100.0 4.2E-48 9E-53 362.6 28.0 214 14-229 75-313 (329)
235 PRK10938 putative molybdenum t 100.0 7.3E-49 1.6E-53 385.3 23.8 203 19-229 3-224 (490)
236 PRK13546 teichoic acids export 100.0 1.2E-47 2.6E-52 349.4 29.8 196 32-231 37-234 (264)
237 PRK09700 D-allose transporter 100.0 1.2E-48 2.7E-53 385.5 24.8 206 17-224 263-493 (510)
238 cd03230 ABC_DR_subfamily_A Thi 100.0 2.3E-48 5E-53 332.5 23.2 164 20-218 1-173 (173)
239 cd03248 ABCC_TAP TAP, the Tran 100.0 6.9E-49 1.5E-53 348.6 20.3 199 16-218 8-226 (226)
240 TIGR02633 xylG D-xylose ABC tr 100.0 1.6E-48 3.5E-53 383.8 24.0 209 18-226 256-489 (500)
241 PRK14264 phosphate ABC transpo 100.0 9.6E-48 2.1E-52 356.7 27.7 212 16-229 42-289 (305)
242 TIGR01189 ccmA heme ABC export 100.0 3.6E-48 7.7E-53 337.8 22.8 187 20-211 1-196 (198)
243 cd03229 ABC_Class3 This class 100.0 4E-48 8.7E-53 332.5 22.2 165 20-217 1-178 (178)
244 cd03213 ABCG_EPDR ABCG transpo 100.0 6.2E-48 1.3E-52 335.8 23.5 175 19-221 3-193 (194)
245 cd03244 ABCC_MRP_domain2 Domai 100.0 3.4E-48 7.4E-53 342.8 22.1 196 19-223 2-220 (221)
246 PRK13545 tagH teichoic acids e 100.0 2E-47 4.4E-52 372.3 29.3 210 17-230 19-233 (549)
247 cd03246 ABCC_Protease_Secretio 100.0 3.8E-48 8.2E-53 331.2 21.0 162 20-218 1-173 (173)
248 cd03369 ABCC_NFT1 Domain 2 of 100.0 1E-47 2.2E-52 336.9 24.3 191 18-223 5-206 (207)
249 TIGR01166 cbiO cobalt transpor 100.0 2.3E-48 4.9E-53 336.8 19.8 174 29-203 2-189 (190)
250 cd03215 ABC_Carb_Monos_II This 100.0 6.2E-48 1.4E-52 332.4 22.0 166 18-218 3-182 (182)
251 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.5E-48 1.4E-52 353.0 23.2 201 20-230 3-226 (275)
252 cd03247 ABCC_cytochrome_bd The 100.0 6.4E-48 1.4E-52 331.0 21.7 167 20-221 1-177 (178)
253 cd03232 ABC_PDR_domain2 The pl 100.0 1.3E-47 2.9E-52 333.2 23.4 175 19-221 3-191 (192)
254 cd03288 ABCC_SUR2 The SUR doma 100.0 1.6E-47 3.6E-52 346.7 24.8 212 13-229 13-243 (257)
255 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.1E-47 4.7E-52 333.8 24.1 175 20-224 1-189 (200)
256 TIGR01257 rim_protein retinal- 100.0 1.9E-47 4.2E-52 416.4 29.3 212 17-229 926-1149(2272)
257 cd03233 ABC_PDR_domain1 The pl 100.0 2.3E-47 5E-52 334.2 23.7 181 19-221 3-201 (202)
258 cd03250 ABCC_MRP_domain1 Domai 100.0 1.7E-47 3.6E-52 334.8 21.9 190 20-217 1-204 (204)
259 PRK10762 D-ribose transporter 100.0 2E-47 4.3E-52 376.3 24.2 206 18-228 256-483 (501)
260 PRK15064 ABC transporter ATP-b 100.0 3.8E-47 8.2E-52 376.6 26.3 205 19-228 1-241 (530)
261 PRK11819 putative ABC transpor 100.0 3.5E-47 7.6E-52 378.9 26.0 206 17-227 4-248 (556)
262 COG2274 SunT ABC-type bacterio 100.0 1.1E-47 2.3E-52 388.3 22.4 209 14-230 466-697 (709)
263 PRK11174 cysteine/glutathione 100.0 4.7E-47 1E-51 379.9 26.6 203 19-230 349-573 (588)
264 cd03214 ABC_Iron-Siderophores_ 100.0 1.6E-47 3.5E-52 329.2 19.7 176 21-221 1-179 (180)
265 PRK13541 cytochrome c biogenes 100.0 4E-47 8.7E-52 330.6 21.9 186 19-210 1-192 (195)
266 TIGR03771 anch_rpt_ABC anchore 100.0 7.7E-47 1.7E-51 335.6 24.0 197 40-239 1-209 (223)
267 PRK11288 araG L-arabinose tran 100.0 3E-47 6.4E-52 375.0 23.4 206 19-228 257-484 (501)
268 PRK15439 autoinducer 2 ABC tra 100.0 6.9E-47 1.5E-51 373.3 24.8 208 17-229 266-492 (510)
269 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.4E-47 1.4E-51 385.3 25.0 201 18-229 450-673 (686)
270 PLN03211 ABC transporter G-25; 100.0 8.1E-47 1.7E-51 382.0 24.4 208 22-229 71-296 (659)
271 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.6E-46 3.5E-51 373.8 26.2 207 17-228 2-247 (552)
272 cd03228 ABCC_MRP_Like The MRP 100.0 7E-47 1.5E-51 322.8 20.3 160 20-217 1-171 (171)
273 PRK11176 lipid transporter ATP 100.0 7.1E-47 1.5E-51 378.0 23.6 206 18-230 340-568 (582)
274 PRK15064 ABC transporter ATP-b 100.0 1.7E-46 3.7E-51 371.9 25.5 202 18-229 318-525 (530)
275 COG1132 MdlB ABC-type multidru 100.0 1.3E-46 2.8E-51 375.4 24.5 207 18-230 327-553 (567)
276 PRK10982 galactose/methyl gala 100.0 1.6E-46 3.5E-51 368.9 24.0 207 18-226 249-477 (491)
277 cd03290 ABCC_SUR1_N The SUR do 100.0 2.5E-46 5.4E-51 330.6 22.8 188 21-216 2-217 (218)
278 PRK10790 putative multidrug tr 100.0 3.7E-46 8E-51 373.8 27.0 204 18-230 339-564 (592)
279 cd03216 ABC_Carb_Monos_I This 100.0 4.2E-46 9E-51 316.0 22.8 151 20-220 1-162 (163)
280 COG4988 CydD ABC-type transpor 100.0 1.6E-46 3.4E-51 364.1 22.8 203 20-230 321-544 (559)
281 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.4E-46 7.3E-51 381.2 26.0 203 17-229 475-700 (710)
282 TIGR01187 potA spermidine/putr 100.0 2.6E-46 5.7E-51 350.0 22.9 181 50-230 1-191 (325)
283 cd03223 ABCD_peroxisomal_ALDP 100.0 3.2E-46 6.9E-51 317.6 21.4 162 20-216 1-163 (166)
284 PRK10535 macrolide transporter 100.0 7.7E-46 1.7E-50 375.0 28.1 211 17-227 2-230 (648)
285 PRK11160 cysteine/glutathione 100.0 2.1E-46 4.6E-51 374.6 23.6 206 17-230 336-563 (574)
286 TIGR01842 type_I_sec_PrtD type 100.0 5.7E-46 1.2E-50 369.2 26.5 209 17-228 314-541 (544)
287 KOG0058|consensus 100.0 1.5E-46 3.2E-51 370.8 21.9 212 15-230 461-692 (716)
288 TIGR03375 type_I_sec_LssB type 100.0 4E-46 8.6E-51 379.9 24.6 206 17-230 461-689 (694)
289 COG4608 AppF ABC-type oligopep 100.0 2.5E-46 5.4E-51 335.3 20.1 185 18-230 3-200 (268)
290 PRK10938 putative molybdenum t 100.0 4.5E-46 9.7E-51 365.6 23.0 205 17-221 258-484 (490)
291 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.3E-45 5.1E-50 365.5 28.0 206 17-229 320-531 (552)
292 TIGR01193 bacteriocin_ABC ABC- 100.0 5E-46 1.1E-50 380.0 23.7 205 17-229 471-697 (708)
293 TIGR00958 3a01208 Conjugate Tr 100.0 5.4E-46 1.2E-50 379.9 23.8 203 17-229 476-702 (711)
294 PRK13657 cyclic beta-1,2-gluca 100.0 2.4E-45 5.2E-50 367.7 26.9 205 17-229 332-558 (588)
295 PRK11819 putative ABC transpor 100.0 4.4E-45 9.5E-50 363.8 28.2 207 17-230 322-534 (556)
296 cd03291 ABCC_CFTR1 The CFTR su 100.0 7.4E-45 1.6E-49 333.9 27.1 201 14-229 34-247 (282)
297 KOG0057|consensus 100.0 1E-45 2.3E-50 354.7 22.1 205 16-229 348-574 (591)
298 COG4172 ABC-type uncharacteriz 100.0 2.8E-45 6E-50 341.2 23.5 215 16-231 273-518 (534)
299 TIGR01192 chvA glucan exporter 100.0 4.5E-45 9.7E-50 365.8 26.5 210 17-230 332-559 (585)
300 TIGR02203 MsbA_lipidA lipid A 100.0 1E-45 2.3E-50 368.5 21.8 206 17-229 328-556 (571)
301 COG4148 ModC ABC-type molybdat 100.0 2.7E-46 5.8E-51 334.2 15.3 198 25-230 6-219 (352)
302 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.2E-45 1.3E-49 328.4 23.3 178 34-218 9-194 (246)
303 COG4172 ABC-type uncharacteriz 100.0 4.4E-45 9.6E-50 339.8 22.5 214 17-230 4-248 (534)
304 TIGR02204 MsbA_rel ABC transpo 100.0 9.6E-45 2.1E-49 362.1 25.6 204 18-229 336-563 (576)
305 COG4674 Uncharacterized ABC-ty 100.0 1.2E-45 2.6E-50 315.3 16.0 212 18-230 4-236 (249)
306 PRK13409 putative ATPase RIL; 100.0 8.4E-45 1.8E-49 363.3 24.7 198 17-225 338-538 (590)
307 TIGR01846 type_I_sec_HlyB type 100.0 1.1E-44 2.3E-49 369.4 25.9 210 17-230 453-681 (694)
308 PRK10789 putative multidrug tr 100.0 1.1E-44 2.5E-49 361.7 25.5 204 18-229 312-538 (569)
309 KOG0055|consensus 100.0 1.4E-45 3.1E-50 381.1 19.0 210 15-230 346-577 (1228)
310 PRK15177 Vi polysaccharide exp 100.0 1E-44 2.3E-49 320.1 21.6 188 33-228 1-191 (213)
311 COG1119 ModF ABC-type molybden 100.0 4.2E-45 9E-50 322.1 17.5 211 13-223 25-256 (257)
312 PRK10636 putative ABC transpor 100.0 2.3E-44 5E-49 363.6 25.3 201 17-228 310-516 (638)
313 COG4987 CydC ABC-type transpor 100.0 1.3E-45 2.8E-50 353.7 15.1 203 19-229 336-561 (573)
314 PRK11147 ABC transporter ATPas 100.0 3.6E-44 7.9E-49 362.2 25.7 205 17-228 317-527 (635)
315 COG4619 ABC-type uncharacteriz 100.0 5.5E-46 1.2E-50 310.8 10.2 195 21-218 5-212 (223)
316 COG4586 ABC-type uncharacteriz 100.0 3.3E-45 7.2E-50 326.3 15.1 199 32-230 37-247 (325)
317 PRK10636 putative ABC transpor 100.0 8.4E-44 1.8E-48 359.6 26.0 204 19-228 1-235 (638)
318 TIGR00955 3a01204 The Eye Pigm 100.0 5.7E-44 1.2E-48 359.7 23.2 200 30-229 36-256 (617)
319 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.1E-44 9E-49 324.6 19.1 192 23-222 4-220 (255)
320 PTZ00265 multidrug resistance 100.0 6.7E-44 1.4E-48 385.6 24.2 206 17-229 1163-1452(1466)
321 PRK10522 multidrug transporter 100.0 1.1E-43 2.5E-48 353.0 23.4 193 18-221 321-530 (547)
322 TIGR00956 3a01205 Pleiotropic 100.0 2E-43 4.4E-48 381.0 27.1 209 18-226 758-990 (1394)
323 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.7E-43 3.7E-48 294.4 20.5 143 20-217 1-144 (144)
324 TIGR02857 CydD thiol reductant 100.0 1E-43 2.3E-48 351.6 21.9 187 19-213 320-529 (529)
325 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.5E-43 3.2E-48 352.8 23.1 194 18-221 336-551 (555)
326 PRK11147 ABC transporter ATPas 100.0 4E-43 8.7E-48 354.6 26.4 203 19-227 3-241 (635)
327 PLN03232 ABC transporter C fam 100.0 2.7E-43 5.8E-48 382.8 25.6 206 16-230 1231-1459(1495)
328 PLN03130 ABC transporter C fam 100.0 1.5E-43 3.2E-48 385.9 23.5 204 17-229 1235-1461(1622)
329 PTZ00265 multidrug resistance 100.0 2.8E-43 6E-48 380.8 22.3 197 19-216 382-655 (1466)
330 TIGR02868 CydC thiol reductant 100.0 2.6E-43 5.6E-48 348.8 19.7 176 18-201 333-529 (529)
331 cd03222 ABC_RNaseL_inhibitor T 100.0 1.3E-42 2.9E-47 298.5 21.3 146 23-219 4-151 (177)
332 PLN03073 ABC transporter F fam 100.0 2.7E-42 5.7E-47 351.4 27.1 199 18-227 507-712 (718)
333 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-42 2.4E-47 378.5 25.6 207 15-230 1280-1509(1522)
334 KOG0055|consensus 100.0 7E-43 1.5E-47 361.2 21.4 210 16-229 984-1213(1228)
335 COG1134 TagH ABC-type polysacc 100.0 2.5E-42 5.5E-47 304.6 21.5 196 31-230 39-237 (249)
336 PTZ00243 ABC transporter; Prov 100.0 2E-42 4.3E-47 376.4 25.0 203 18-229 1307-1533(1560)
337 COG0396 sufC Cysteine desulfur 100.0 1E-41 2.2E-46 297.8 24.1 213 18-231 2-235 (251)
338 TIGR00954 3a01203 Peroxysomal 100.0 2.3E-42 5E-47 350.2 22.2 193 17-215 449-653 (659)
339 PLN03140 ABC transporter G fam 100.0 8E-42 1.7E-46 368.6 26.9 208 19-226 867-1107(1470)
340 KOG0059|consensus 100.0 2.3E-42 4.9E-47 359.5 19.9 212 18-229 563-787 (885)
341 TIGR01271 CFTR_protein cystic 100.0 1.9E-41 4E-46 368.1 25.3 204 16-229 1214-1440(1490)
342 COG4167 SapF ABC-type antimicr 100.0 1E-41 2.3E-46 288.8 16.8 213 18-230 3-240 (267)
343 PRK13409 putative ATPase RIL; 100.0 1.1E-41 2.5E-46 340.7 18.9 183 23-216 77-287 (590)
344 cd00267 ABC_ATPase ABC (ATP-bi 100.0 8E-41 1.7E-45 281.1 21.1 146 22-217 2-157 (157)
345 cd03238 ABC_UvrA The excision 100.0 5.7E-41 1.2E-45 288.2 19.8 151 31-217 7-165 (176)
346 COG0488 Uup ATPase components 100.0 9.9E-41 2.1E-45 328.2 24.1 205 18-227 2-238 (530)
347 TIGR00956 3a01205 Pleiotropic 100.0 7E-41 1.5E-45 361.4 24.3 199 31-229 73-300 (1394)
348 COG1101 PhnK ABC-type uncharac 100.0 4.3E-41 9.4E-46 291.2 16.4 207 19-225 1-234 (263)
349 COG4107 PhnK ABC-type phosphon 100.0 3.5E-41 7.6E-46 283.7 13.9 210 17-230 4-242 (258)
350 COG4133 CcmA ABC-type transpor 100.0 3.7E-41 8E-46 286.2 14.1 184 19-205 2-194 (209)
351 COG4618 ArpD ABC-type protease 100.0 1.9E-40 4.1E-45 316.1 19.7 209 15-230 330-561 (580)
352 TIGR00957 MRP_assoc_pro multi 100.0 7.3E-40 1.6E-44 356.5 23.8 203 19-229 636-850 (1522)
353 PLN03130 ABC transporter C fam 100.0 9.3E-40 2E-44 356.2 24.4 198 19-229 614-828 (1622)
354 PLN03140 ABC transporter G fam 100.0 4.6E-40 1E-44 354.9 21.5 203 26-229 173-427 (1470)
355 KOG0061|consensus 100.0 1.3E-39 2.8E-44 326.9 23.0 210 20-229 26-260 (613)
356 PLN03073 ABC transporter F fam 100.0 4.5E-40 9.7E-45 335.1 19.1 205 18-227 176-429 (718)
357 KOG0056|consensus 100.0 1.7E-40 3.8E-45 314.6 14.9 214 13-230 531-762 (790)
358 PLN03232 ABC transporter C fam 100.0 1.1E-39 2.3E-44 354.7 22.9 198 19-229 614-828 (1495)
359 COG4136 ABC-type uncharacteriz 100.0 6.5E-40 1.4E-44 270.0 15.0 194 19-213 2-207 (213)
360 TIGR01271 CFTR_protein cystic 100.0 7.4E-39 1.6E-43 347.9 26.0 189 32-229 439-636 (1490)
361 cd03270 ABC_UvrA_I The excisio 100.0 1.1E-38 2.3E-43 284.2 19.6 186 29-222 5-226 (226)
362 PTZ00243 ABC transporter; Prov 100.0 1.9E-38 4E-43 345.4 23.6 193 29-229 670-870 (1560)
363 COG5265 ATM1 ABC-type transpor 100.0 7.5E-38 1.6E-42 292.8 15.7 210 17-230 260-487 (497)
364 COG4778 PhnL ABC-type phosphon 100.0 8.5E-38 1.8E-42 262.1 14.2 198 18-215 3-227 (235)
365 COG0488 Uup ATPase components 100.0 1.2E-36 2.6E-41 299.3 22.7 200 16-227 318-523 (530)
366 cd03271 ABC_UvrA_II The excisi 100.0 1.1E-35 2.3E-40 270.0 18.3 186 33-224 9-261 (261)
367 KOG0054|consensus 100.0 1.1E-35 2.5E-40 313.3 19.2 212 10-230 1129-1363(1381)
368 KOG0054|consensus 100.0 2.3E-35 5E-40 311.0 21.3 202 16-229 515-731 (1381)
369 PF00005 ABC_tran: ABC transpo 100.0 8.2E-36 1.8E-40 244.1 11.8 123 35-170 1-137 (137)
370 cd03278 ABC_SMC_barmotin Barmo 100.0 2.4E-35 5.2E-40 257.6 14.8 158 36-215 14-190 (197)
371 COG1129 MglA ABC-type sugar tr 100.0 1.2E-34 2.7E-39 280.1 21.1 207 18-228 262-489 (500)
372 cd03272 ABC_SMC3_euk Eukaryoti 100.0 2.1E-34 4.6E-39 258.1 13.8 187 20-214 4-234 (243)
373 COG4138 BtuD ABC-type cobalami 100.0 1E-34 2.2E-39 244.7 8.1 211 19-241 3-231 (248)
374 cd03274 ABC_SMC4_euk Eukaryoti 100.0 2.8E-35 6E-40 260.0 4.3 185 19-215 5-204 (212)
375 cd03273 ABC_SMC2_euk Eukaryoti 100.0 4.9E-34 1.1E-38 257.7 11.5 188 20-214 6-242 (251)
376 cd03279 ABC_sbcCD SbcCD and ot 100.0 2.6E-33 5.6E-38 247.3 13.5 184 19-217 5-210 (213)
377 cd03240 ABC_Rad50 The catalyti 100.0 2.4E-32 5.1E-37 239.9 13.7 160 37-215 15-197 (204)
378 KOG0065|consensus 100.0 3.7E-32 8E-37 282.0 13.6 218 12-229 780-1021(1391)
379 PRK00349 uvrA excinuclease ABC 100.0 2E-30 4.4E-35 269.2 21.9 126 99-230 792-928 (943)
380 PRK00635 excinuclease ABC subu 100.0 2.6E-30 5.6E-35 279.0 23.4 205 19-229 600-906 (1809)
381 COG3845 ABC-type uncharacteriz 100.0 5.4E-30 1.2E-34 244.4 21.7 212 16-227 254-490 (501)
382 KOG0927|consensus 100.0 6.1E-31 1.3E-35 252.5 10.0 201 18-228 388-595 (614)
383 TIGR00630 uvra excinuclease AB 100.0 2.4E-29 5.2E-34 260.7 22.2 123 99-227 790-923 (924)
384 cd03276 ABC_SMC6_euk Eukaryoti 100.0 1.3E-29 2.8E-34 221.6 16.8 165 34-216 11-191 (198)
385 KOG0927|consensus 100.0 8.9E-30 1.9E-34 244.5 14.5 202 16-228 72-308 (614)
386 COG4615 PvdE ABC-type sideroph 100.0 5.4E-30 1.2E-34 238.5 10.1 192 19-222 322-530 (546)
387 COG4170 SapD ABC-type antimicr 100.0 1.7E-29 3.8E-34 218.7 12.4 211 20-230 4-249 (330)
388 cd03275 ABC_SMC1_euk Eukaryoti 100.0 1.1E-29 2.4E-34 228.9 11.7 186 20-215 4-233 (247)
389 COG4178 ABC-type uncharacteriz 100.0 7.7E-29 1.7E-33 244.2 18.1 190 17-214 390-587 (604)
390 COG1245 Predicted ATPase, RNas 100.0 1.6E-28 3.4E-33 232.1 16.4 187 19-215 342-531 (591)
391 KOG0062|consensus 100.0 4E-29 8.7E-34 238.8 11.1 198 20-228 81-284 (582)
392 KOG0066|consensus 99.9 2.6E-27 5.6E-32 223.0 15.7 207 19-237 586-799 (807)
393 KOG0062|consensus 99.9 6.2E-27 1.4E-31 223.9 14.4 192 19-220 362-559 (582)
394 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.4E-26 2.9E-31 202.5 11.7 145 34-221 16-171 (200)
395 KOG2355|consensus 99.9 1.1E-25 2.4E-30 194.4 15.2 203 17-227 11-235 (291)
396 KOG0060|consensus 99.9 9.3E-25 2E-29 211.4 17.3 196 16-215 430-641 (659)
397 COG1245 Predicted ATPase, RNas 99.9 1.1E-25 2.5E-30 212.8 9.9 181 24-215 79-288 (591)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.9 2.2E-25 4.7E-30 197.1 10.4 172 35-217 14-211 (213)
399 cd03239 ABC_SMC_head The struc 99.9 1.4E-23 3.1E-28 180.6 15.3 74 142-215 95-172 (178)
400 cd03283 ABC_MutS-like MutS-lik 99.9 1.6E-24 3.4E-29 189.7 9.0 140 31-206 13-153 (199)
401 KOG0065|consensus 99.9 4.6E-24 1E-28 222.1 13.4 198 32-229 128-351 (1391)
402 cd03227 ABC_Class2 ABC-type Cl 99.9 1E-23 2.2E-28 178.6 11.2 140 35-215 11-155 (162)
403 cd03241 ABC_RecN RecN ATPase i 99.9 1E-22 2.3E-27 186.5 18.2 78 139-217 168-249 (276)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.9 3.9E-23 8.4E-28 183.8 9.6 154 30-223 15-175 (222)
405 PRK00635 excinuclease ABC subu 99.9 1.1E-21 2.4E-26 212.6 21.8 108 122-229 1678-1796(1809)
406 COG2401 ABC-type ATPase fused 99.9 3.1E-22 6.7E-27 187.8 14.0 177 32-218 396-587 (593)
407 cd03243 ABC_MutS_homologs The 99.9 6E-23 1.3E-27 179.6 7.9 151 37-224 21-174 (202)
408 PRK00349 uvrA excinuclease ABC 99.9 5.6E-22 1.2E-26 206.4 16.1 131 97-229 435-585 (943)
409 KOG0064|consensus 99.9 3.4E-22 7.3E-27 191.9 13.2 185 17-211 479-679 (728)
410 KOG0066|consensus 99.9 1.2E-22 2.5E-27 191.7 8.4 202 19-224 264-494 (807)
411 COG0178 UvrA Excinuclease ATPa 99.9 2.6E-21 5.6E-26 193.5 18.2 108 123-230 802-920 (935)
412 TIGR00630 uvra excinuclease AB 99.9 1.8E-21 4E-26 202.2 16.3 130 98-228 434-582 (924)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.9 6.5E-22 1.4E-26 173.8 9.6 141 30-206 14-156 (204)
414 cd03242 ABC_RecF RecF is a rec 99.8 3.8E-20 8.2E-25 169.1 17.3 76 139-218 181-269 (270)
415 cd03284 ABC_MutS1 MutS1 homolo 99.8 9.3E-20 2E-24 161.5 10.8 153 31-224 17-176 (216)
416 KOG0063|consensus 99.8 2.9E-19 6.2E-24 168.4 13.7 180 27-215 343-532 (592)
417 smart00534 MUTSac ATPase domai 99.8 5.1E-19 1.1E-23 152.9 6.4 133 47-216 1-137 (185)
418 TIGR02858 spore_III_AA stage I 99.7 4.2E-18 9.1E-23 155.5 10.2 130 46-225 112-265 (270)
419 cd03281 ABC_MSH5_euk MutS5 hom 99.7 3.2E-17 6.9E-22 145.0 13.5 134 33-206 17-159 (213)
420 TIGR01069 mutS2 MutS2 family p 99.7 9.8E-18 2.1E-22 172.4 8.7 147 19-205 295-449 (771)
421 PRK00064 recF recombination pr 99.7 5.7E-16 1.2E-20 147.2 19.5 77 139-218 271-359 (361)
422 PF02463 SMC_N: RecF/RecN/SMC 99.7 2.9E-17 6.2E-22 145.0 6.6 171 36-213 16-211 (220)
423 cd03287 ABC_MSH3_euk MutS3 hom 99.6 2E-15 4.2E-20 134.4 12.9 138 31-206 17-159 (222)
424 KOG0063|consensus 99.6 2E-16 4.3E-21 149.3 4.9 171 43-215 98-288 (592)
425 PTZ00132 GTP-binding nuclear p 99.6 5.2E-16 1.1E-20 136.5 6.7 50 140-189 149-205 (215)
426 PRK00409 recombination and DNA 99.6 2.1E-15 4.6E-20 155.6 9.7 139 38-212 319-462 (782)
427 cd01128 rho_factor Transcripti 99.6 1.2E-14 2.7E-19 131.3 12.9 166 39-220 10-213 (249)
428 cd00820 PEPCK_HprK Phosphoenol 99.6 3.4E-15 7.4E-20 117.8 6.9 68 32-108 2-78 (107)
429 TIGR00634 recN DNA repair prot 99.6 6.9E-15 1.5E-19 147.3 10.0 77 140-217 439-519 (563)
430 PRK08533 flagellar accessory p 99.6 2E-14 4.4E-19 128.5 11.2 148 20-203 8-164 (230)
431 TIGR00618 sbcc exonuclease Sbc 99.6 1.3E-14 2.9E-19 154.5 11.0 82 135-216 944-1036(1042)
432 PHA02562 46 endonuclease subun 99.6 6.9E-15 1.5E-19 146.8 8.3 80 137-218 464-555 (562)
433 PRK07721 fliI flagellum-specif 99.5 3.3E-14 7.1E-19 137.9 11.2 167 31-224 145-338 (438)
434 PRK13695 putative NTPase; Prov 99.5 1.2E-14 2.5E-19 124.1 6.1 150 47-221 2-156 (174)
435 cd01124 KaiC KaiC is a circadi 99.5 1.1E-13 2.4E-18 118.4 11.6 143 47-215 1-164 (187)
436 cd03286 ABC_MSH6_euk MutS6 hom 99.5 4.6E-13 9.9E-18 118.9 15.3 132 30-206 15-158 (218)
437 PRK10869 recombination and rep 99.5 5.9E-14 1.3E-18 140.1 10.3 75 141-216 430-508 (553)
438 PF13304 AAA_21: AAA domain; P 99.5 3.8E-14 8.2E-19 123.4 7.5 67 138-204 233-302 (303)
439 PRK03918 chromosome segregatio 99.5 6.4E-14 1.4E-18 146.7 10.2 80 136-215 783-868 (880)
440 COG0178 UvrA Excinuclease ATPa 99.5 3.8E-13 8.3E-18 135.5 15.1 133 97-230 427-578 (935)
441 PRK01156 chromosome segregatio 99.5 6.2E-13 1.3E-17 139.8 13.6 78 137-214 797-883 (895)
442 PRK06793 fliI flagellum-specif 99.5 3.4E-13 7.3E-18 130.2 10.6 163 20-221 131-303 (432)
443 PRK10246 exonuclease subunit S 99.4 4.7E-13 1E-17 142.6 10.9 81 135-215 943-1032(1047)
444 COG3910 Predicted ATPase [Gene 99.4 1.9E-12 4.1E-17 111.0 10.5 174 32-218 23-206 (233)
445 TIGR02168 SMC_prok_B chromosom 99.4 7.3E-13 1.6E-17 141.5 8.2 78 136-214 1084-1165(1179)
446 PRK13830 conjugal transfer pro 99.4 1.1E-11 2.4E-16 129.1 15.2 67 157-223 650-727 (818)
447 TIGR02788 VirB11 P-type DNA tr 99.4 2.8E-12 6E-17 119.5 9.6 145 38-229 137-281 (308)
448 TIGR00606 rad50 rad50. This fa 99.3 2.1E-12 4.6E-17 140.5 8.9 70 137-206 1195-1275(1311)
449 PRK06995 flhF flagellar biosyn 99.3 5.4E-12 1.2E-16 123.5 8.7 149 34-199 245-400 (484)
450 cd01120 RecA-like_NTPases RecA 99.3 1.3E-11 2.8E-16 101.9 9.3 130 47-204 1-140 (165)
451 PRK02224 chromosome segregatio 99.3 8.6E-12 1.9E-16 130.9 9.4 80 137-216 777-869 (880)
452 PRK06067 flagellar accessory p 99.3 4.8E-11 1E-15 106.5 12.4 141 41-203 21-167 (234)
453 TIGR02169 SMC_prok_A chromosom 99.3 8.7E-12 1.9E-16 133.6 8.7 79 136-215 1069-1151(1164)
454 cd01131 PilT Pilus retraction 99.2 1.1E-10 2.3E-15 102.1 10.0 119 47-214 3-122 (198)
455 TIGR03238 dnd_assoc_3 dnd syst 99.2 1.5E-11 3.2E-16 119.3 4.6 50 32-83 19-69 (504)
456 cd02023 UMPK Uridine monophosp 99.1 4.9E-11 1.1E-15 103.7 4.9 113 47-175 1-114 (198)
457 cd01125 repA Hexameric Replica 99.1 3.5E-10 7.5E-15 101.4 10.4 131 45-201 1-159 (239)
458 TIGR02655 circ_KaiC circadian 99.1 2.2E-11 4.7E-16 120.1 0.8 151 41-214 17-190 (484)
459 TIGR01026 fliI_yscN ATPase Fli 99.1 2.3E-09 5E-14 104.2 13.8 178 31-224 150-343 (440)
460 smart00382 AAA ATPases associa 99.1 2.9E-09 6.3E-14 84.4 11.8 118 44-200 1-125 (148)
461 PRK07196 fliI flagellum-specif 99.0 2.7E-10 5.8E-15 110.2 6.0 81 31-112 142-240 (434)
462 TIGR00611 recf recF protein. A 99.0 3.8E-10 8.3E-15 107.5 6.9 62 141-205 275-345 (365)
463 COG0419 SbcC ATPase involved i 99.0 1.2E-09 2.5E-14 115.4 10.0 80 137-216 811-898 (908)
464 TIGR03881 KaiC_arch_4 KaiC dom 99.0 1.9E-10 4.1E-15 102.1 2.4 26 41-66 16-41 (229)
465 cd01130 VirB11-like_ATPase Typ 99.0 8.9E-10 1.9E-14 95.2 6.2 74 36-109 16-97 (186)
466 PRK05399 DNA mismatch repair p 99.0 5.3E-09 1.1E-13 109.5 12.6 136 32-208 595-737 (854)
467 PRK06002 fliI flagellum-specif 98.9 2.8E-09 6.2E-14 103.3 8.9 75 19-94 139-230 (450)
468 PRK13898 type IV secretion sys 98.9 8.4E-08 1.8E-12 100.2 18.0 50 155-204 638-688 (800)
469 TIGR02680 conserved hypothetic 98.9 3.4E-09 7.3E-14 115.7 7.5 63 136-201 1242-1316(1353)
470 PLN03210 Resistant to P. syrin 98.9 1.1E-08 2.3E-13 110.7 11.0 143 38-214 200-349 (1153)
471 cd01876 YihA_EngB The YihA (En 98.9 1.1E-08 2.4E-13 84.3 8.7 135 48-187 2-169 (170)
472 TIGR01420 pilT_fam pilus retra 98.8 1.4E-08 3E-13 96.1 9.6 122 43-213 120-242 (343)
473 PRK13891 conjugal transfer pro 98.8 9.8E-08 2.1E-12 100.2 16.5 54 152-205 680-734 (852)
474 PRK14079 recF recombination pr 98.8 7.9E-09 1.7E-13 98.0 6.5 74 141-220 263-345 (349)
475 TIGR02903 spore_lon_C ATP-depe 98.8 3.6E-08 7.9E-13 99.9 11.5 109 44-186 174-291 (615)
476 PRK06315 type III secretion sy 98.8 1.5E-08 3.2E-13 98.5 8.1 112 31-144 151-294 (442)
477 PRK00454 engB GTP-binding prot 98.7 3.2E-08 6.9E-13 84.9 7.8 65 122-190 126-195 (196)
478 PRK09825 idnK D-gluconate kina 98.7 8.2E-09 1.8E-13 88.7 3.4 36 44-83 2-37 (176)
479 COG4637 Predicted ATPase [Gene 98.7 2E-07 4.4E-12 85.9 11.7 73 140-213 269-345 (373)
480 TIGR00152 dephospho-CoA kinase 98.7 4.8E-08 1E-12 84.3 7.1 130 47-216 1-133 (188)
481 PRK08149 ATP synthase SpaL; Va 98.6 8.4E-08 1.8E-12 92.9 8.0 64 30-94 137-216 (428)
482 PRK09862 putative ATP-dependen 98.6 3.3E-08 7.1E-13 97.7 4.3 62 22-83 187-248 (506)
483 PRK07594 type III secretion sy 98.6 5.4E-08 1.2E-12 94.3 5.1 62 20-82 130-192 (433)
484 PRK13873 conjugal transfer ATP 98.6 7.4E-07 1.6E-11 93.3 13.2 60 156-215 632-702 (811)
485 cd01136 ATPase_flagellum-secre 98.5 1.1E-07 2.5E-12 89.0 6.1 51 30-81 55-105 (326)
486 PF00488 MutS_V: MutS domain V 98.5 1.8E-06 3.9E-11 77.6 13.5 48 158-205 121-170 (235)
487 cd01122 GP4d_helicase GP4d_hel 98.5 1.8E-06 3.8E-11 78.5 13.5 153 31-200 16-190 (271)
488 PRK09270 nucleoside triphospha 98.5 8.7E-08 1.9E-12 85.4 4.8 35 42-76 30-64 (229)
489 PF13558 SbcCD_C: Putative exo 98.5 1.6E-07 3.5E-12 71.9 5.6 51 136-186 27-90 (90)
490 TIGR02546 III_secr_ATP type II 98.5 1.4E-07 3.1E-12 91.5 6.2 68 31-99 132-214 (422)
491 TIGR00416 sms DNA repair prote 98.5 2.9E-07 6.3E-12 90.2 8.4 138 41-217 90-247 (454)
492 TIGR03880 KaiC_arch_3 KaiC dom 98.5 1.1E-06 2.4E-11 77.8 11.0 56 158-214 106-177 (224)
493 TIGR00554 panK_bact pantothena 98.5 7.8E-08 1.7E-12 88.9 3.7 62 45-107 62-133 (290)
494 PRK01889 GTPase RsgA; Reviewed 98.5 1.5E-07 3.2E-12 89.6 5.5 73 34-107 184-262 (356)
495 PF13555 AAA_29: P-loop contai 98.5 7.8E-08 1.7E-12 68.5 2.6 39 35-73 12-51 (62)
496 cd00009 AAA The AAA+ (ATPases 98.5 3.4E-07 7.4E-12 73.2 6.7 109 44-202 18-131 (151)
497 PRK07960 fliI flagellum-specif 98.5 2E-07 4.3E-12 90.6 6.1 63 31-94 162-239 (455)
498 TIGR00235 udk uridine kinase. 98.5 5.1E-08 1.1E-12 85.5 1.7 29 43-71 4-32 (207)
499 PRK10078 ribose 1,5-bisphospho 98.5 1.8E-07 3.8E-12 80.7 4.8 36 45-83 2-37 (186)
500 PRK10416 signal recognition pa 98.5 1.2E-07 2.5E-12 88.9 3.9 41 43-83 112-152 (318)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-66 Score=448.43 Aligned_cols=212 Identities=30% Similarity=0.505 Sum_probs=200.7
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~ 88 (291)
||+++|++|+||+..+|++||++|++||+++|+||||||||||||||++|.+|++|+|+++|.++ +++|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 68899999999999999999999999999999999999999999999999999999999999754 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHhc-cccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 89 MPQELALHGELSIRETFRYYG-YMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
|||+++|||.+||.||+.++. ...+.+++++++++.++|+++||.+ ++.+|.+|||||||||+|||||+.+|+++|+|
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 999999999999999998753 3457888999999999999999976 79999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+|||+...++++.+++++++|+|.++|||+|.+++. ||||++|++|+++.++++++++..
T Consensus 162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999999999999987 999999999999999999887654
No 2
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-62 Score=432.73 Aligned_cols=217 Identities=31% Similarity=0.505 Sum_probs=204.5
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
|++++|++|.|+++.+++|+||+|++||+++++|||||||||+||+|++++.|++|+|+++|+++ ++||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 68899999999999999999999999999999999999999999999999999999999999987 469999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC---CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
-|...|||++||.||+.+.-.+.++++++.+++++++|+.+||+. .+++|++|||||||||.+||||+.+|+++|+|
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 999999999999999998878888888999999999999999963 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEAL 235 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 235 (291)
|||++|||.++.++.+.+.+++++ |+||||||||++++.. +|||++|++|+++..++|+++.......+
T Consensus 161 EPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F 231 (309)
T COG1125 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231 (309)
T ss_pred CCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence 999999999999999999999854 9999999999999966 99999999999999999999876554443
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-61 Score=438.24 Aligned_cols=213 Identities=27% Similarity=0.453 Sum_probs=202.1
Q ss_pred eEEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
||++++++|.|.. ..+|+||||+|++|||+||+|.||||||||+|||++|.+|++|+|.++|+++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6889999999976 5799999999999999999999999999999999999999999999999876
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
++||++||+++|+...||++|++|+..+.+.++++.++++.++++.+||++ .+++|.+|||||||||+|||||+.+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 469999999999999999999999999999999999999999999999976 78999999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
++||+|||||+|||.+.+.++++|+++.+ .|.||+++||.|+.++. |||+++|++|++++.|+..+++...
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 99999999999999999999999999974 59999999999999987 9999999999999999988876543
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-60 Score=422.25 Aligned_cols=203 Identities=32% Similarity=0.468 Sum_probs=189.3
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCC
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQEL 93 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~ 93 (291)
.+++++++++.|++..+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|+++ .++|||||++
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 467899999999999999999999999999999999999999999999999999999999999876 5799999999
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
.|+|++||.||+.++....+.+.++.++++.++++.+||.. .+++|++|||||||||+|||||+.+|++|+|||||++|
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgAL 161 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchh
Confidence 99999999999999877766667777789999999999977 79999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC--CEEEE
Q psy6612 173 DPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD--DQYIG 220 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~--G~i~~ 220 (291)
|..++..+.+.+.++. +.++||++||||++++-. +|||++|.+ |++..
T Consensus 162 DalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~ 213 (248)
T COG1116 162 DALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGE 213 (248)
T ss_pred hHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceee
Confidence 9999999999999986 568999999999999976 999999999 45543
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.1e-60 Score=425.42 Aligned_cols=222 Identities=27% Similarity=0.455 Sum_probs=201.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
+|+++|+++.|+++++|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|+++ +.+|||
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 68899999999999999999999999999999999999999999999999999999999999987 469999
Q ss_pred cCCCCCCCCCCHHHHHHHhccc----cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 90 PQELALHGELSIRETFRYYGYM----FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
||.+...+.+||+|.+.++..- +....++.++.+.++++.+|+.+ +++++.+|||||||||.|||||+++|++|+
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLL 161 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILL 161 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEE
Confidence 9999888899999999875322 22234455668899999999976 789999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHHhcC
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHG 242 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 242 (291)
|||||++||..++.++++++++++ ++|+|||+++||++.+.+ ||++++|++|+++++|.++++..+ +.+.+.|+..
T Consensus 162 LDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~--e~l~~Vygv~ 239 (258)
T COG1120 162 LDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE--ENLREVYGVD 239 (258)
T ss_pred eCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH--HHHHHHhCCc
Confidence 999999999999999999999998 569999999999999976 999999999999999999988765 6677777654
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.9e-60 Score=413.26 Aligned_cols=224 Identities=29% Similarity=0.451 Sum_probs=205.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------C
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~ 84 (291)
...+++++++++||++.+++|+||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++ +
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
++|++||...||..+||+||+.|+.+-+ ..+++..++.+..-++.+||.. .+++|++|||||++|++||||++.+|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPe 165 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPE 165 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCC
Confidence 6999999999999999999999976554 5777888888888899999964 689999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
++++||||+||||.+...|-++|+++++. |.|+++||||++.+.. |||++++.+|+|++.|+++++.+.-...+.+.+
T Consensus 166 ll~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf~ 245 (263)
T COG1127 166 LLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFF 245 (263)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHHh
Confidence 99999999999999999999999999865 9999999999999976 999999999999999999998765445555554
Q ss_pred h
Q psy6612 240 R 240 (291)
Q Consensus 240 ~ 240 (291)
.
T Consensus 246 ~ 246 (263)
T COG1127 246 N 246 (263)
T ss_pred c
Confidence 3
No 7
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-59 Score=438.06 Aligned_cols=228 Identities=32% Similarity=0.475 Sum_probs=206.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYM 89 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v 89 (291)
...+++++++|+||+..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++ ++||+|
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4578899999999999999999999999999999999999999999999999999999999999987 679999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
||+..|||.|||+||+.|+.+..+ .+++++++++.++++.++++. .++++++|||||||||+|||||+.+|++|||||
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE 162 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE 162 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence 999999999999999999987444 344668889999999999976 789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHH-HHHHHhcCcc
Q psy6612 168 PTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEA-LEDALRHGNV 244 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~-~~~~~~~~~~ 244 (291)
|+|+||..-+.++...++++.+ .|.|.|+||||.+++.. +|||++|++|+|...|+++++....... +.+.++..++
T Consensus 163 PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~~N~ 242 (352)
T COG3842 163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIGESNI 242 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHHhCccee
Confidence 9999999999999999999974 59999999999999976 9999999999999999999987765433 3333443333
No 8
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-59 Score=433.57 Aligned_cols=215 Identities=31% Similarity=0.458 Sum_probs=204.6
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEc
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMP 90 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~ 90 (291)
.+|+++|++|.||+..+|+++||+|+.||+++|+||||||||||||+|+||++|++|+|.++|+++ ++||+||
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 368899999999987799999999999999999999999999999999999999999999999987 6799999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|+..|||.|||+||+.|+.+..+.++++.++++.++++.+++++ ++++|.+|||||||||+|||||+++|+++|||||+
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence 99999999999999999999988889999999999999999987 79999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHH
Q psy6612 170 VGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLV 232 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~ 232 (291)
|+||+..+..+...|+++.++ |.|+|.+|||..++.. +||+++|++|++...|++.++.+...
T Consensus 162 SnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred hHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 999999999999999999854 8999999999999977 99999999999999999999877544
No 9
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-60 Score=403.63 Aligned_cols=212 Identities=27% Similarity=0.467 Sum_probs=203.0
Q ss_pred eEEEEeEEEEECCEe-eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~-~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v 89 (291)
||++.+++|+|+... +++||||+++.||++||+|||||||||+||+|++++.|++|.|+++|.+. ++||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 688999999999876 99999999999999999999999999999999999999999999999876 579999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
+.+..+|..||++||+.|++.++++++.+.+.+++++.+.+++.. .++++++||.||||||+|||||+++|++++||||
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP 160 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEP 160 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCC
Confidence 988999999999999999999999999999999999999999966 7999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||..+++.+.+.+++++++|++||++||+|++++. ||+++++++|+++..|+.+.+...
T Consensus 161 ~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 161 TSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999889999999999999986 999999999999999999887654
No 10
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.5e-58 Score=406.51 Aligned_cols=200 Identities=31% Similarity=0.476 Sum_probs=183.9
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
|+++++++|.|+. ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|+|.++|+++
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 4678999999964 4799999999999999999999999999999999999999999999999876
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-C-CCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-A-KKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
++||||||+.+|.|++||.||+.++..+.+.+....++++.++++.+|+.+ . +++|.+|||||||||+|||||+.+
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 359999999999999999999998776666555456778889999999975 4 488999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEE
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQY 218 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i 218 (291)
|+++++||||.+||..+.+.+++++++++++ |+||||||||...+..|||++.|++|++
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999854 8999999999999999999999999984
No 11
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.3e-58 Score=423.71 Aligned_cols=213 Identities=38% Similarity=0.681 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEE
Q psy6612 18 HSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGY 88 (291)
Q Consensus 18 ~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~ 88 (291)
.++++++++|+|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+. +++||
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 3567899999999 69999999999999999999999999999999999999999999999999875 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
+||++.+++.+|++||+.|++.+++.+....+++++++++.++|.. .++++++||+|||||++||+||+++|++|||||
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999999999999999998888765556678999999999976 578899999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCC-cEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNG-KTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g-~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+||||.++..++++|++++++| +||+++||.++++.. ||+|++|++|+++..++++++...
T Consensus 163 Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 999999999999999999999876 899999999999987 999999999999999988775443
No 12
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-58 Score=408.94 Aligned_cols=220 Identities=30% Similarity=0.480 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEEcC
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYMPQ 91 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v~q 91 (291)
.+++++|+++.|++.+||+||||++++|++++|+||||||||||+|+|+|+++|++|+|.++|++. ..||||||
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 468899999999976899999999999999999999999999999999999999999999999865 36999999
Q ss_pred CCC--CCCCCCHHHHHHHhccc----cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 92 ELA--LHGELSIRETFRYYGYM----FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 92 ~~~--l~~~ltv~enl~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
... .-..+||+|.+.++... ++...+..+++++++|+.+|+.+ .++++++|||||+|||.|||||+++|++|+
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll 162 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL 162 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE
Confidence 653 33347999999875321 12223444788999999999976 799999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHHh
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALR 240 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 240 (291)
|||||+|+|+.++..|+++|++++++|+||++||||++.+.. ||+++.| |+++++.|+++++.+. +.+...|.
T Consensus 163 LDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~~--~~l~~~~g 236 (254)
T COG1121 163 LDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE--ENLEKAFG 236 (254)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccCH--HHHHHHhC
Confidence 999999999999999999999999779999999999999966 9999999 4678899999988765 44555554
No 13
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.7e-57 Score=422.22 Aligned_cols=214 Identities=33% Similarity=0.642 Sum_probs=198.7
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEE
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIG 87 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig 87 (291)
...++++++++|+|+++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++ +.+|
T Consensus 4 ~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred CCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999886 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
|+||++.+++.+|++||+.+++..++.+..+..+++.++++.+++.. .++++++||||||||++|||||+++|++||||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD 163 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD 163 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 99999999999999999998776666665666678889999999976 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+|||+.++..++++|++++++|+|||++||+++++.. |||+++|++|+++..|+++++..
T Consensus 164 EPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 164 EPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999998779999999999999976 99999999999999999887754
No 14
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-58 Score=400.61 Aligned_cols=220 Identities=29% Similarity=0.447 Sum_probs=199.6
Q ss_pred ceEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------C
Q psy6612 18 HSVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------S 84 (291)
Q Consensus 18 ~~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~ 84 (291)
.||+++|+++.| +++++|+||||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.++ +
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 478999999999 899999999999999999999999999999999999999999999999999776 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhc--------cccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYG--------YMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~--------~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAra 155 (291)
++||+||+++|.+.+||.+|+..+. .++++..++.+..+.++|+.+|+.+ +.++.++|||||||||+||||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa 161 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA 161 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence 6999999999999999999997542 2345556677888899999999965 678999999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~ 233 (291)
|+++|+++|.|||+++|||.+.+++++.|++++ ++|.|||++.|+++.+.. |||++-|++|+++.+|++.++.++
T Consensus 162 L~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~--- 238 (258)
T COG3638 162 LVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDE--- 238 (258)
T ss_pred HhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHH---
Confidence 999999999999999999999999999999998 569999999999999966 999999999999999999986654
Q ss_pred HHHHHHh
Q psy6612 234 ALEDALR 240 (291)
Q Consensus 234 ~~~~~~~ 240 (291)
.+.+.|.
T Consensus 239 ~~~~iYg 245 (258)
T COG3638 239 ALDEIYG 245 (258)
T ss_pred HHHHHhc
Confidence 4455554
No 15
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.2e-56 Score=419.01 Aligned_cols=213 Identities=35% Similarity=0.645 Sum_probs=196.7
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGY 88 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~ 88 (291)
..+|+++|++|+|+++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++ +.+||
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 3479999999999999999999999999999999999999999999999999999999999999875 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
+||++.+++.+|++||+.++...++.+..+..+++.++++.+++.. .++++.+||||||||++|||||+++|++|||||
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDE 198 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE 198 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999999999987666655554555667888999999976 689999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+||||.++..++++|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 199 Pt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 199 PTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999998779999999999999976 99999999999999999888754
No 16
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.4e-56 Score=419.87 Aligned_cols=211 Identities=27% Similarity=0.449 Sum_probs=194.2
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
||+++|++|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5889999999952 5799999999999999999999999999999999999999999999999875
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
++|||+||++.+++.+|++||+.++....+.+..+.++++.++++.+|+.+ .++++.+|||||||||+|||||+.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 259999999999999999999998765555556667778899999999976 689999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||++||+.++..++++|++++++ |.|||++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999864 8999999999999976 99999999999999999887754
No 17
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-56 Score=421.78 Aligned_cols=212 Identities=29% Similarity=0.448 Sum_probs=196.9
Q ss_pred eEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEc
Q psy6612 19 SVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~ 90 (291)
+|++++++++| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++ +.|||+|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 68899999999 788999999999999999999999999999999999999999999999999876 4699999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+|+.+||+||+.|.....+.+..+..+++.++++.++++. .++++.+|||||||||+|||||+.+|++|||||||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999999998765555555666778899999999976 68999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 170 VGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++||+.++..+++.|+++.++ |.|+|++|||++++.. ||++++|++|+++..|+++++.+.
T Consensus 163 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 163 SNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999754 8999999999999966 999999999999999999888654
No 18
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-57 Score=409.13 Aligned_cols=212 Identities=29% Similarity=0.480 Sum_probs=197.9
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE---ec-------CeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR---QI-------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~---~~-------~~ig~ 88 (291)
+|++++++|.|+...+++|||++|+.||.+||+||||||||||||+|+|++.|++|+|.++|+ +. ++|||
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 578899999999999999999999999999999999999999999999999999999999999 43 57999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccC--CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFD--MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|||+..+|+.|||.+||+|+..... .++..++.++.++|+.++|+. .+++|.+|||||||||+|||||+.+|++|||
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLL 161 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLL 161 (345)
T ss_pred EEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEee
Confidence 9999999999999999999875542 345677889999999999987 6899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+++||..-++++...|+++.++ |.|.++||||.+++.. ||||++|++|+|...|+++++...
T Consensus 162 DEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 162 DEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 9999999999999999999999865 9999999999999976 999999999999999999988654
No 19
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-56 Score=419.15 Aligned_cols=214 Identities=29% Similarity=0.479 Sum_probs=199.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYM 89 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v 89 (291)
+.+|+++++++.|+++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +++||+
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 3479999999999999999999999999999999999999999999999999999999999999876 579999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
||++.+|+.+||+||+.|....++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 999999999999999998766556666667788999999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|++||+..+.++.+.|+++.++ |.|+|++|||++++.. ||++++|++|+++..++++++...
T Consensus 164 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 164 LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999754 8999999999999966 999999999999999999887654
No 20
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-56 Score=393.67 Aligned_cols=211 Identities=26% Similarity=0.391 Sum_probs=192.8
Q ss_pred ceEEEEeEEEEECCEe----eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 18 HSVAVTSAYKKIGNHV----VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~----~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
.+|+++|+++.|+.+. +|++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|.++|++.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4789999999999877 99999999999999999999999999999999999999999999999754
Q ss_pred CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 ~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+.+.+|||+| ++.|.+||++.+.-+....+.++. ++++.++++.+|+.. ++++|.+|||||+||++|||||+.+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 4699999998 688999999999877666555443 345899999999975 6899999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|++||||||||+||+..+.+++++|.++++ .+.|+||+|||+..+.. ||||++|++|++++.++..++...
T Consensus 160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999985 48999999999999988 999999999999999998887654
No 21
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=9e-56 Score=417.88 Aligned_cols=212 Identities=34% Similarity=0.494 Sum_probs=197.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|+++|++++|+++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +.+||+||
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 68899999999999999999999999999999999999999999999999999999999999876 46999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+||+||+.|+....+.+..+.+++++++++.++|+. .++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s 163 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLS 163 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999999999998765555556667788999999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+||+..+..+++.|+++.++ |.|+|++|||++++.. ||++++|++|+++..|+++++.+.
T Consensus 164 ~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 164 ALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999754 8999999999999966 999999999999999999888654
No 22
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=9.7e-57 Score=381.80 Aligned_cols=205 Identities=27% Similarity=0.428 Sum_probs=194.3
Q ss_pred eEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------Ce
Q psy6612 19 SVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~ 85 (291)
||++++++|.|++ .+||+||||+|++||++-|+||||||||||+|+|++..+|+.|+|+++|.++ ++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 6789999999965 5599999999999999999999999999999999999999999999999986 56
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
||+||||..|.+..||+||++|+....+.++++.++++.++|+.+||.+ .+..|.+|||||||||+||||++++|++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl 160 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL 160 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe
Confidence 9999999999999999999999999999999999999999999999976 788999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
.||||.+|||....++++++.++...|.||+|+|||.+.+.. -.|++.+++|+++.+..
T Consensus 161 ADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 161 ADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred ecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999889999999999999987 57899999999987543
No 23
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-56 Score=386.64 Aligned_cols=213 Identities=30% Similarity=0.445 Sum_probs=196.6
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc-----cEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA-----GTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~-----G~I~~~g~~~--------- 83 (291)
..++++++++.||.+.||+|||++|++++++|++||||||||||||+++.+..... |+|.++|+++
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 45788999999999999999999999999999999999999999999999987664 9999999987
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAral 156 (291)
+++|+|||.|+.|| +|++||+.|+.++++...++..+.+++.|+...|++ +++.+..||||||||++|||||
T Consensus 86 lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence 46999999999999 899999999999888777788888999999888852 4678889999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLV 232 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~ 232 (291)
+.+|+|||||||||+|||.+..++.++|.+|+ +.-||++|||+|..+.+ +|+.+++..|++++.|+.+.++....
T Consensus 165 Av~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~ 240 (253)
T COG1117 165 AVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK 240 (253)
T ss_pred hcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCcc
Confidence 99999999999999999999999999999998 45899999999999988 89999999999999999988876544
No 24
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.2e-55 Score=416.29 Aligned_cols=212 Identities=27% Similarity=0.438 Sum_probs=197.5
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc--cEEEECCEec-------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA--GTIKLSFRQI-------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~--G~I~~~g~~~-------~~ig~v 89 (291)
.|++++++++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|.++|+++ +.+||+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 4789999999999999999999999999999999999999999999999999999 9999999875 469999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
||++.+|+.+||+||+.|+....+.+..+.++++.++++.++|+. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEP 164 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 999999999999999998765555566667778999999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhC--CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALN--GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~--g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|+|||+..+.++++.|++++++ |.|+|++|||++++.. ||++++|++|+++..|+++++...
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999865 7999999999999966 999999999999999999988664
No 25
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.1e-55 Score=406.41 Aligned_cols=212 Identities=34% Similarity=0.633 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYM 89 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v 89 (291)
.+|+++|++++|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ +.+||+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 468899999999999999999999999999999999999999999999999999999999999875 359999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
||++.+++.+|++||+.+....++.+..+..+++.++++.+++.. .++++++||||||||++|||||+++|++||||||
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999986554444444455567788999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+|||+.++..+++.|++++++|.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 163 t~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 163 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999998779999999999999976 99999999999999999887654
No 26
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-56 Score=392.93 Aligned_cols=212 Identities=30% Similarity=0.542 Sum_probs=204.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----CeEEEEcCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----SDIGYMPQEL 93 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----~~ig~v~q~~ 93 (291)
+|++++++|+||.+.|++|+||++++|+++|++|||||||||++|+|.|++.|++|+|.|+|.++ .+|||+|.+.
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 68899999999999999999999999999999999999999999999999999999999999887 4699999999
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
.||+.+||.|.+.|++.+.+++..+.++++..+|+++++.. ..+++.+||.|+||++.+..|++|+|+++|||||||||
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 99999999999999999999999999999999999999965 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||.+.+.+.+.+.+++++|+|||++||.|+.++. ||++++|++|+.|.+|+.+++...
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 9999999999999999999999999999999987 999999999999999998877653
No 27
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.7e-55 Score=416.34 Aligned_cols=216 Identities=31% Similarity=0.445 Sum_probs=198.9
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEE
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGY 88 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~ 88 (291)
..++|+++|+++.|+++++|+++||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +.+||
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35578999999999999999999999999999999999999999999999999999999999999976 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
+||++.+|+.+||+||+.|+....+.+..+.++++.++++.++++. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDE 170 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 170 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999999999998765555555666678899999999976 689999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
||++||+..+..+.+.|+++.++ |.|+|++|||++++.. ||++++|++|+++..++++++....
T Consensus 171 P~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 171 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999854 8999999999999866 9999999999999999998876643
No 28
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-55 Score=390.15 Aligned_cols=209 Identities=31% Similarity=0.485 Sum_probs=188.0
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------CeEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SDIG 87 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~ig 87 (291)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 4689999999988999999999999999999999999999999999999999999999999764 2489
Q ss_pred EEcCCCCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|+||++.+++.+|+.||+.+....+ +...++..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llll 160 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999998754322 2344455667888999999975 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
||||+|||+.++..+++.|+++++ .|+|||++|||++++.. ||++++|++|+++..++++++.
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999986 48999999999999976 9999999999999988876543
No 29
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=8e-55 Score=411.42 Aligned_cols=212 Identities=26% Similarity=0.444 Sum_probs=195.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|++++++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.+||+||
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999876 46999999
Q ss_pred CCCCCCCCCHHHHHHHhcccc----CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 92 ELALHGELSIRETFRYYGYMF----DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
++.+|+.+|++||+.|....+ ..+.++..+++.++++.++++. .++++.+|||||||||+|||||+.+|++||||
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD 161 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999865432 2344556678899999999976 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+|||+.++..+++.|++++++ |+|+|++|||++++.. ||++++|++|+++..|+++++...
T Consensus 162 EP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999865 8999999999999976 999999999999999999888654
No 30
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-55 Score=391.94 Aligned_cols=212 Identities=27% Similarity=0.404 Sum_probs=197.2
Q ss_pred ceEEEEeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeE
Q psy6612 18 HSVAVTSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~i 86 (291)
.++++++++++|++. .+|+++||++++||+++|+|+||||||||+++++|+++|++|+|.++|.++ +++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 467899999999765 999999999999999999999999999999999999999999999999863 469
Q ss_pred EEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 87 GYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 87 g~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
|||||+| .++. -||.+.++|+....+.+.+++++++.++++.+++.+ .++++.+|||||||||+||.+|+++|++|
T Consensus 82 G~VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 82 GLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred EEEEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 9999998 4454 499999999988888888889999999999999976 79999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||||||||+.+++.+++++++++++ |+|||++|||++++.. ||++++|++|+++.+|++.++.+.
T Consensus 161 iLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999876 6999999999999976 999999999999999998777654
No 31
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-55 Score=385.56 Aligned_cols=207 Identities=30% Similarity=0.570 Sum_probs=188.1
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEcC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMPQ 91 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~q 91 (291)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 4689999999999999999999999999999999999999999999999999999999999765 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|+++|+.+....++....+..+++.++++.++++. .++++.+||||||||++|||||+.+|++|||||||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999999999987654444444445667889999999975 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
|||+.++..+++.|++++++ |+|||++||+++++.. ||++++|++|+++..+++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999865 8999999999999976 99999999999998877554
No 32
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.4e-55 Score=385.21 Aligned_cols=200 Identities=26% Similarity=0.412 Sum_probs=180.9
Q ss_pred eEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------C
Q psy6612 19 SVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------S 84 (291)
Q Consensus 19 ~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~ 84 (291)
||+++|++++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 5789999999964 5799999999999999999999999999999999999999999999999865 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
.++|+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 58999999999999999999987654444444445667889999999975 68899999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
||||||+|||+.++..+.+.|++++++|+|||++|||++++.. ||++++|++|++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999997778999999999999976 999999999864
No 33
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-55 Score=383.84 Aligned_cols=203 Identities=35% Similarity=0.518 Sum_probs=183.2
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
+++++++++|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 4689999999988999999999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|++||+.+....++.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999999999987543333334445567888999999975 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEe
Q psy6612 172 LDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~ 222 (291)
||+.++..+++.|+++++ .|+|||++|||++++.. ||++++|++|+++..|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999975 48999999999999866 9999999999987643
No 34
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-54 Score=412.38 Aligned_cols=212 Identities=27% Similarity=0.442 Sum_probs=195.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+||+||
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 58899999999999999999999999999999999999999999999999999999999999876 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+|++||+.|.....+.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts 162 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999999998755444555556678899999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+.++..+++.|+++.++ |.|+|++|||++++.. ||++++|++|+++..++++++...
T Consensus 163 ~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999754 8999999999999976 999999999999999999887653
No 35
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-54 Score=412.07 Aligned_cols=214 Identities=29% Similarity=0.428 Sum_probs=197.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYM 89 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v 89 (291)
..+|++++++++|++..+|+++||++++||+++|+||||||||||||+|+|+.+|++|+|+++|+++ +.+||+
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 5579999999999988999999999999999999999999999999999999999999999999876 469999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
||++.+|+.+||.||+.|.....+.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999998765445556667778899999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|++||+..+..+.+.|+++.+ .|.|+|++|||++++.. ||++++|++|+++..|+++++...
T Consensus 177 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 177 MGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 999999999999999999864 48999999999999866 999999999999999999887654
No 36
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.8e-54 Score=400.98 Aligned_cols=210 Identities=30% Similarity=0.568 Sum_probs=194.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~ 90 (291)
++++++++++|+++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++ +.+||+|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999876 3599999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+++++|+.||+.+....++.+.++..+++.++++.+++.. .++++++||||||||++|||||+++|++|||||||
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999998766666555555667889999999976 68999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||+.+++.+++.|+++++ ++|||++||+++++.. |||+++|++|+++..|+.+++..
T Consensus 162 ~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 162 TGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred ccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999974 7999999999999976 99999999999999999887644
No 37
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1e-54 Score=402.79 Aligned_cols=203 Identities=35% Similarity=0.652 Sum_probs=186.7
Q ss_pred EEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEcCCCCCCCC
Q psy6612 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMPQELALHGE 98 (291)
Q Consensus 27 ~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~q~~~l~~~ 98 (291)
|+|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++ +.+||+||++.+++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 468888999999999999999999999999999999999999999999999999875 359999999999999
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHH
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~ 177 (291)
+|++||+.+....++.+..+..+++.++++.+++.. .++++++|||||||||+|||||+++|++|||||||+|||+.++
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 999999988766665555555677889999999976 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 178 QIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 178 ~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
..++++|++++++|+|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 161 ~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 161 RAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999998779999999999999976 99999999999999999877644
No 38
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-54 Score=407.39 Aligned_cols=211 Identities=26% Similarity=0.451 Sum_probs=192.9
Q ss_pred eEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
||+++|++++|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 578999999997 47899999999999999999999999999999999999999999999999875
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+.+||+||++.+++.+|+.||+.+....++.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 259999999999999999999988655555555556678889999999976 689999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+|||+.++..++++|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999754 8999999999999976 99999999999999999887754
No 39
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-54 Score=386.87 Aligned_cols=210 Identities=30% Similarity=0.459 Sum_probs=188.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|++++++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 47899999999989999999999999999999999999999999999999999999999999875 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCC----ChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 92 ELALHGELSIRETFRYYGYMFDM----TDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
++.+++.+|+.||+.+.....+. ...+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++||||
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 161 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999989999999875433221 22334456788999999975 68899999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|||+|||+.+++.+.++|++++++ |+|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 162 EPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999864 8999999999999866 9999999999999998877654
No 40
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3e-54 Score=384.17 Aligned_cols=210 Identities=31% Similarity=0.506 Sum_probs=189.1
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~v 89 (291)
|+++|++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 4689999999989999999999999999999999999999999999999999999999999864 249999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
||++.+++.+|++||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++||||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999999999999987543333333444567788999999975 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+|||+.+++.+.+.|++++++|+|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999998778999999999999866 99999999999999888776543
No 41
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-55 Score=386.10 Aligned_cols=220 Identities=29% Similarity=0.423 Sum_probs=199.1
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.++++++++|+||+..|++||||++++||+++||||||||||||+|+|+|+++|++|+|.++|+++ ..|+
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 467899999999999999999999999999999999999999999999999999999999999987 2488
Q ss_pred EEcCCCCCCCCCCHHHHHHHhcccc-------C-----CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMF-------D-----MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~-------~-----~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAr 154 (291)
.-||.+.+|++|||.||+......+ + ...++..+++.++++++||.+ ++++.++||+|||+|+.|||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIAr 162 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIAR 162 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHH
Confidence 9999999999999999998653211 1 134567788999999999976 79999999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLV 232 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~ 232 (291)
||+.+|++|+||||.+||.+.....+.++|+++++ .|.||++|.|||+.+.. ||||++|+.|+++++|+|+++.++
T Consensus 163 ALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d-- 240 (250)
T COG0411 163 ALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN-- 240 (250)
T ss_pred HHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC--
Confidence 99999999999999999999999999999999986 46999999999999976 999999999999999999998876
Q ss_pred HHHHHHH
Q psy6612 233 EALEDAL 239 (291)
Q Consensus 233 ~~~~~~~ 239 (291)
..+.+.|
T Consensus 241 p~VieAY 247 (250)
T COG0411 241 PRVIEAY 247 (250)
T ss_pred HHhHHHh
Confidence 3444444
No 42
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-54 Score=381.07 Aligned_cols=205 Identities=28% Similarity=0.452 Sum_probs=184.9
Q ss_pred EEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcC
Q psy6612 20 VAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQ 91 (291)
Q Consensus 20 l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q 91 (291)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 468999999987 7899999999999999999999999999999999999999999999999876 46999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|+.||+.+....++.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 160 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 9999998999999987644444444445567888999999975 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEe--CCEEEEEech
Q psy6612 171 GLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMR--DDQYIGRLVH 224 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~--~G~i~~~~~~ 224 (291)
|||+.++..++++|+++.+ .|+|||++||+++++.. ||++++|+ +|+++++++.
T Consensus 161 ~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 161 ALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999864 58999999999999865 99999999 7999887653
No 43
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-56 Score=380.11 Aligned_cols=220 Identities=28% Similarity=0.439 Sum_probs=199.7
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----------eEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----------DIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----------~ig 87 (291)
.+|.++++.|+|+.++++++|||++++||++||+|||||||||.+.++.|+.+|++|+|.++|.++. .||
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 3578899999999999999999999999999999999999999999999999999999999999872 499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChH--HHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDD--QIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
|+||+++.|..+||.||+......+....+ +.+.+++++++.|.+.+ .+++..+||||||+|+.|||||+.+|++++
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiL 162 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFIL 162 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999877666543333 44556889999999987 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
|||||+|+||.+...+.++++.|++.|..|+++.|+..+... |||.+++.+|++.++|+++++.++ +.....|
T Consensus 163 LDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n--~~Vr~~Y 236 (243)
T COG1137 163 LDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN--EDVRRVY 236 (243)
T ss_pred ecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC--hhhhhhc
Confidence 999999999999999999999999899999999999999755 999999999999999999998875 3444444
No 44
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-54 Score=383.13 Aligned_cols=207 Identities=26% Similarity=0.388 Sum_probs=186.1
Q ss_pred ceEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 18 HSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
++|++++++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 36889999999964 5799999999999999999999999999999999999999999999999875
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+.++|+||++.+++.+|++||+.+.....+...++.++++.++++.+|+.. .++++.+||||||||++|||||+.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 249999999999999999999987543333344455567889999999976 6789999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEech
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~ 224 (291)
|++|||||||+|||+.++..+.+.|+++++ +|+|||++|||++++..+|++++|++|++++.++.
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELSL 229 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999975 58999999999999988789999999999987764
No 45
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.7e-54 Score=381.03 Aligned_cols=203 Identities=25% Similarity=0.513 Sum_probs=185.3
Q ss_pred eEEEEeEEEEECCE----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeE
Q psy6612 19 SVAVTSAYKKIGNH----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDI 86 (291)
Q Consensus 19 ~l~~~~l~~~~~~~----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~i 86 (291)
||+++|++++|+++ ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 57899999999876 899999999999999999999999999999999999999999999999875 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
+|+||++.+++.+|++||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 160 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999987654444444555677889999999975 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence 99999999999999999999998778999999999999866 999999999998764
No 46
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.7e-54 Score=410.97 Aligned_cols=221 Identities=26% Similarity=0.401 Sum_probs=197.2
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
.+|+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.+||
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 368899999999999999999999999999999999999999999999999999999999999875 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhcccc----CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 89 MPQELALHGELSIRETFRYYGYMF----DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
++|++.+++.+|++||+.+....+ .......+++++++++.+++.. .++++.+||||||||++|||||+++|++|
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iL 161 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999998753211 1112344567889999999976 68999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHHh
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALR 240 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 240 (291)
||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|+++..|+++++... ..+.+.|.
T Consensus 162 LLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~--~~l~~~~~ 237 (402)
T PRK09536 162 LLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA--DTLRAAFD 237 (402)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc--HHHHHHhC
Confidence 9999999999999999999999998778999999999999966 999999999999999999887654 34555554
No 47
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4.3e-54 Score=384.10 Aligned_cols=208 Identities=29% Similarity=0.450 Sum_probs=186.7
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~v 89 (291)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 4679999999988999999999999999999999999999999999999999999999999865 249999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCC----------ChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDM----------TDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~----------~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
||++.+++.+|++||+.+....... ......+++.++++.+++.. .++++.+|||||||||+|||||+.
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999999999999875432211 12344567888999999976 688999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+|++|||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..++++++
T Consensus 161 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 999999999999999999999999999998778999999999999966 999999999999988887654
No 48
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=5e-54 Score=378.04 Aligned_cols=203 Identities=32% Similarity=0.487 Sum_probs=183.9
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
|+++|++++|+++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 4689999999988999999999999999999999999999999999999999999999999875 259999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|++||+.+.....+...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||+|
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999988999999987644444444555667888999999975 6899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEe
Q psy6612 172 LDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~ 222 (291)
||+.++..+++.|+++++ .|+|||++|||++++.. ||++++|++|++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999985 48999999999999976 9999999999998653
No 49
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-54 Score=383.06 Aligned_cols=209 Identities=30% Similarity=0.494 Sum_probs=188.4
Q ss_pred eEEEEeEEEEECCE----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIGNH----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
||+++|++++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 57899999999876 899999999999999999999999999999999999999999999999875
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+.++|+||++.+++.+|+.||+.+....++.........+.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 249999999999999999999987543334444444567888999999975 688999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
++||||||+|||+.++..+++.|++++++ |+|||++||+++++.. ||++++|++|+++..++.+++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999765 8999999999999976 999999999999998876654
No 50
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.1e-53 Score=382.05 Aligned_cols=211 Identities=27% Similarity=0.472 Sum_probs=190.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~ 90 (291)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+|
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 57899999999989999999999999999999999999999999999999999999999999875 3599999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+++.+|+.||+.+....++.......+.+.++++.+|+.. .++++.+||||||||++|||||+.+|+++||||||
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999888999999987654444444445567888999999975 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 170 VGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||+.++..+.+.|+++++ +|.|||++||+++++..||++++|++|+++..++++++..
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 161 VGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999999999999999974 5899999999999997799999999999999988776654
No 51
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.6e-54 Score=380.20 Aligned_cols=199 Identities=30% Similarity=0.468 Sum_probs=179.7
Q ss_pred EEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------
Q psy6612 20 VAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------ 83 (291)
Q Consensus 20 l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------ 83 (291)
|++++++++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 468999999986 7899999999999999999999999999999999999999999999999764
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+.++|+||++.+++.+|+.||+.+.....+......++++.++++.++++. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 249999999999999999999987654444333344567888999999976 688999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEE
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQY 218 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i 218 (291)
+|||||||+|||+.++..+.++|+++++ .|+|||++||+++++..||++++|++|++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999986 58999999999999877999999999864
No 52
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-54 Score=375.98 Aligned_cols=202 Identities=32% Similarity=0.583 Sum_probs=184.0
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----CeEEEEcCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----SDIGYMPQELA 94 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----~~ig~v~q~~~ 94 (291)
|+++|+++.|+++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||++.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 4689999999988999999999999999999999999999999999999999999999999875 46999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
+++.+|+.||+.+....++....+..+.+.++++.++++. .++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 9999999999987654444444455667888999999975 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 999999999999998778999999999999966 999999999998754
No 53
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-54 Score=393.35 Aligned_cols=214 Identities=28% Similarity=0.417 Sum_probs=200.2
Q ss_pred eEEEEeEEEEECCE------------------------eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc
Q psy6612 19 SVAVTSAYKKIGNH------------------------VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG 74 (291)
Q Consensus 19 ~l~~~~l~~~~~~~------------------------~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G 74 (291)
.++++|++|-||.+ ..++|+||+++.|||+.|+|-||||||||+|+++++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 46788888888632 368999999999999999999999999999999999999999
Q ss_pred EEEECCEec-------------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcC
Q psy6612 75 TIKLSFRQI-------------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVG 140 (291)
Q Consensus 75 ~I~~~g~~~-------------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~ 140 (291)
+|+++|+++ +++++|||++.|+|+.||.||+.|+....+.++.+.++++.++++.+||+. .+++|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999987 469999999999999999999999999999999999999999999999986 689999
Q ss_pred cCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 141 ~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
+|||||||||.|||||+.+|++||+|||||+|||--+.++.+.|.+|.+ -++||+|+|||++++.+ .|||.+|++|+|
T Consensus 164 eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i 243 (386)
T COG4175 164 ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI 243 (386)
T ss_pred cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE
Confidence 9999999999999999999999999999999999999999999999974 48999999999999976 999999999999
Q ss_pred EEEechhHHHHHHH
Q psy6612 219 IGRLVHHDIVESLV 232 (291)
Q Consensus 219 ~~~~~~~~~~~~~~ 232 (291)
+..|+++++.....
T Consensus 244 vQ~Gtp~eIl~~PA 257 (386)
T COG4175 244 VQVGTPEEILLNPA 257 (386)
T ss_pred EEeCCHHHHHcCcc
Confidence 99999999876544
No 54
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.9e-54 Score=405.70 Aligned_cols=204 Identities=26% Similarity=0.418 Sum_probs=188.3
Q ss_pred EEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeEEEEcCCC
Q psy6612 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDIGYMPQEL 93 (291)
Q Consensus 27 ~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ig~v~q~~ 93 (291)
|+|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.+||+||++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 468889999999999999999999999999999999999999999999999999875 2599999999
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
.+|+.+||+||+.+.....+.+.++..+++.++++.++|+. .++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999999999998766556666666778999999999976 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 173 DPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||.++..+.+.|.++++ .|+|||++|||++++.. ||++++|++|+++..|+++++...
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 99999999999999975 48999999999999866 999999999999999998887543
No 55
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.2e-53 Score=377.49 Aligned_cols=206 Identities=35% Similarity=0.591 Sum_probs=186.5
Q ss_pred EEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEE
Q psy6612 20 VAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v 89 (291)
|++++++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 468999999987 7899999999999999999999999999999999999999999999999875 359999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
+|++.+++.+|+.||+.+....++.+.....+++.++++.+++.. .++++.+||+|||||++|||||+.+|++||||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 160 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999989999999987655444444445567888999999965 6788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
|+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..+++++
T Consensus 161 ~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 161 TSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999999999999999975 5899999999999976 99999999999998887654
No 56
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.3e-53 Score=387.54 Aligned_cols=213 Identities=26% Similarity=0.398 Sum_probs=190.6
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------C
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~ 84 (291)
+++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++ +
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4578999999999999999999999999999999999999999999999999999999999999764 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
.++|+||++.+++.+|+.||+.+..... .......+.++.++++.+++.. .++++++||||||||++|||||+.+|++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l 164 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 4999999999999999999998753222 2233344556778899999976 6889999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.++..+++.|++++++ |+|||++|||++++.. ||++++|++|+++..++++++.+
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 165 IMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999754 8999999999999976 99999999999999998877654
No 57
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=9.8e-54 Score=376.46 Aligned_cols=199 Identities=30% Similarity=0.454 Sum_probs=180.1
Q ss_pred eEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------Ce
Q psy6612 19 SVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~ 85 (291)
||+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 57899999999 567899999999999999999999999999999999999999999999999865 25
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
++|++|++.+++.+|+.||+.+....++......++++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 8999999999999999999987644333334445567889999999975 688999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
|||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+
T Consensus 161 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 161 ADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999997778999999999999976 99999999884
No 58
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-53 Score=389.27 Aligned_cols=211 Identities=27% Similarity=0.389 Sum_probs=188.3
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
.++|+++++++.|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++ +.+
T Consensus 2 ~~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 2 DNIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred CceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 45789999999995 57899999999999999999999999999999999999999999999999876 359
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 87 GYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 87 g~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
||+||++. .+..+|++||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999973 3445799999987543334444555667889999999965 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
|||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++.+
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999998678999999999999965 999999999999999987643
No 59
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.7e-53 Score=380.21 Aligned_cols=211 Identities=27% Similarity=0.452 Sum_probs=189.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-----------eEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-----------DIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~-----------~ig 87 (291)
||++++++++|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++. .++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 578999999999889999999999999999999999999999999999999999999999998752 489
Q ss_pred EEcCCCCCCCCCCHHHHHHHhcc-ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGY-MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|++|++.+++.+|+.||+.+... ..+....+..+++.++++.++++. .++++.+||||||||++|||||+.+|+++||
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 160 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999986432 223334445567888999999975 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+.++|++++++|+|||++||+++++.. ||++++|++|+++..++.+++.+
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 99999999999999999999998778999999999999966 99999999999999988776543
No 60
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.7e-53 Score=376.67 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=179.9
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
+|++++++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 3678999999964 5799999999999999999999999999999999999999999999999864
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+.++|+||++.+++.+|++||+.+..........+..+++.++++.++++. .++++.+||||||||++|||||+.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 249999999999999999999987543333333344567788999999975 68899999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEE
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYI 219 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~ 219 (291)
++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++++..||++++|++|+++
T Consensus 161 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999975 489999999999998779999999999875
No 61
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.3e-53 Score=377.42 Aligned_cols=206 Identities=31% Similarity=0.518 Sum_probs=183.7
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~v 89 (291)
|+++|++++|+++++++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++ +.++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 4689999999988999999999999999999999999999999999999999999999999764 249999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHc-CCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL-ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
||++.+++.+|++||+.+....+. ....+.++.++++.+ ++.. .++++.+||||||||++|||||+.+|++|||||
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 999999999999999987644332 223345566778887 4654 688999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
||+|||+.++..+++.|++++++|+|||++||+++++.. ||++++|++|+++..++.+++
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 999999999999999999998778999999999999866 999999999999988876654
No 62
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.1e-53 Score=376.82 Aligned_cols=202 Identities=28% Similarity=0.374 Sum_probs=182.9
Q ss_pred eEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------Ce
Q psy6612 19 SVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~ 85 (291)
||+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 57899999999 678899999999999999999999999999999999999999999999999865 24
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
++|+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 8999999998888999999987644444444445567788999999965 688999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEE
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~ 220 (291)
|||||+|||+.++..+++.|+++++++.|||++||+++++.. ||++++|++|++++
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 161 ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999997678999999999999976 99999999999864
No 63
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-53 Score=390.61 Aligned_cols=214 Identities=21% Similarity=0.306 Sum_probs=192.3
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
..+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 2 SNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred CceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHh
Confidence 457899999999963 4699999999999999999999999999999999999999999999999876 2
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 85 DIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 85 ~ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
.+||+||++. +++.+|+.||+.+.....+...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 5899999984 6677899999987654445555566678899999999976 6899999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||||+|||+.++..+++.|++++++ |+|||++||+++++..||++++|++|+++..++++++...
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999864 8999999999999966999999999999999998876543
No 64
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-53 Score=406.82 Aligned_cols=213 Identities=23% Similarity=0.393 Sum_probs=191.5
Q ss_pred cceEEEEeEEEEECCEe------------------------eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHV------------------------VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~------------------------~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~ 72 (291)
..+|+++|++|.||.++ +|+|+||+|++||+++|+||||||||||+|+|+|+++|+
T Consensus 2 ~~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~ 81 (400)
T PRK10070 2 AIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT 81 (400)
T ss_pred CcEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 34677788888777654 899999999999999999999999999999999999999
Q ss_pred ccEEEECCEec-------------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCC
Q psy6612 73 AGTIKLSFRQI-------------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKI 138 (291)
Q Consensus 73 ~G~I~~~g~~~-------------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~ 138 (291)
+|+|+++|+++ +.+||+||++.+|+++|+.||+.+.....+.+..+..+++.++++.+++.. .+++
T Consensus 82 sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~ 161 (400)
T PRK10070 82 RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY 161 (400)
T ss_pred CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC
Confidence 99999999875 259999999999999999999998655445555555677889999999976 6899
Q ss_pred cCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCC
Q psy6612 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDD 216 (291)
Q Consensus 139 ~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G 216 (291)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.++++ .|+|||++|||++++.. ||++++|++|
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999999974 58999999999999966 9999999999
Q ss_pred EEEEEechhHHHH
Q psy6612 217 QYIGRLVHHDIVE 229 (291)
Q Consensus 217 ~i~~~~~~~~~~~ 229 (291)
+++..++++++..
T Consensus 242 ~i~~~g~~~~l~~ 254 (400)
T PRK10070 242 EVVQVGTPDEILN 254 (400)
T ss_pred EEEecCCHHHHHh
Confidence 9999998887754
No 65
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-53 Score=390.14 Aligned_cols=211 Identities=27% Similarity=0.411 Sum_probs=188.8
Q ss_pred eEEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
+|+++++++.|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4889999999974 4799999999999999999999999999999999999999999999999875
Q ss_pred -CeEEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC--C-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 84 -SDIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP--P-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 84 -~~ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
+.+||+||++. .+...|++||+.+.....+...++..+++.++++.+|+. . .++++.+||||||||++|||||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 24899999973 233479999998765444556666677888999999996 3 689999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|++|||||||+|||+.++..++++|++++++ |.|||++|||++++.. |||+++|++|+++.+++++++.+
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999764 8999999999999965 99999999999999999887654
No 66
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-53 Score=379.58 Aligned_cols=211 Identities=29% Similarity=0.483 Sum_probs=190.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~ 88 (291)
++++++++++|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++ ..++|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 68899999999989999999999999999999999999999999999999999999999999764 34999
Q ss_pred EcCCCCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
+||++.+++.+|+.||+.+..... .....+.+.++.++++.+++.. .++++.+||||||||++|||||+.+|++||||
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999999999998754332 2233344567888999999965 68899999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+|||+.++..+.+.+++++++|+|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999998778999999999998866 99999999999999988877643
No 67
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.8e-53 Score=381.24 Aligned_cols=211 Identities=28% Similarity=0.456 Sum_probs=189.5
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------------- 83 (291)
||+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 68899999999988999999999999999999999999999999999999999999999998754
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhcc-ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGY-MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+.++|+||++.+++.+|+.||+.+... ..+.......+++.++++.+++.. .++++.+||||||||++|||||+.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 248999999999998999999986432 123334445567888999999976 6889999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++|||||||+|||+.++..+.++|++++++|.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 163 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999998778999999999999966 99999999999999988876643
No 68
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.7e-53 Score=397.00 Aligned_cols=214 Identities=23% Similarity=0.357 Sum_probs=192.5
Q ss_pred cceEEEEeEEEEECC-------------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 17 KHSVAVTSAYKKIGN-------------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-------------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
+.+|+++|+++.|+. ..+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 457899999999962 5799999999999999999999999999999999999999999999999875
Q ss_pred ------------CeEEEEcCCC--CCCCCCCHHHHHHHhcccc--CCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChh
Q psy6612 84 ------------SDIGYMPQEL--ALHGELSIRETFRYYGYMF--DMTDDQIETRSKEILKLLELP-P-AKKIVGALSGG 145 (291)
Q Consensus 84 ------------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgG 145 (291)
++++||||++ .+++.+|+.+|+.+....+ +.+.++.++++.++++.+++. . .++++++||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 3599999998 6888999999998754333 245566677888999999994 3 68999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 146 QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 146 qkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
|||||+|||||+.+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||++++.. ||++++|.+|++++.|+
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~ 245 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGT 245 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999999999999999854 8999999999999976 99999999999999999
Q ss_pred hhHHHHH
Q psy6612 224 HHDIVES 230 (291)
Q Consensus 224 ~~~~~~~ 230 (291)
.+++...
T Consensus 246 ~~~i~~~ 252 (331)
T PRK15079 246 YDEVYHN 252 (331)
T ss_pred HHHHHcC
Confidence 8887653
No 69
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.3e-53 Score=380.92 Aligned_cols=209 Identities=30% Similarity=0.409 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------Ce
Q psy6612 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~ 85 (291)
||+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 578999999998 78899999999999999999999999999999999999999999999999874 24
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccc--------cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYM--------FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
++|+||++.+++.+|+.||+.+.... .+......++++.++++.+++.. .++++.+||||||||++|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999764211 11112334567888999999965 6889999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++++.. ||++++|++|+++..++++++
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999975 48999999999999965 999999999999998887765
No 70
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-53 Score=379.18 Aligned_cols=209 Identities=30% Similarity=0.447 Sum_probs=185.4
Q ss_pred EEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------CeE
Q psy6612 20 VAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SDI 86 (291)
Q Consensus 20 l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~i 86 (291)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999987 8899999999999999999999999999999999999999999999999765 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccc--------cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYM--------FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+|+||++.+++.+|+.||+.+.... .+.......+++.++++.+++.. .++++.+|||||||||+|||||+
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999764211 11122334456788999999975 68899999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
.+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||++++.. ||++++|++|+++..++++++.
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999975 48999999999999975 9999999999999998887653
No 71
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=4.9e-53 Score=375.65 Aligned_cols=204 Identities=27% Similarity=0.380 Sum_probs=183.0
Q ss_pred cceEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 17 KHSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
..+|++++++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 457899999999975 3699999999999999999999999999999999999999999999999765
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
+.++|+||++.+++.+|+.||+.+.....+....+.++++.++++.+++.. .++++.+||||||||++|||||+.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 259999999999999999999987543333334445667889999999975 688999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEE
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIG 220 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~ 220 (291)
+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++++..||++++|++|++++
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999754 899999999999986699999999999865
No 72
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-53 Score=379.74 Aligned_cols=209 Identities=31% Similarity=0.521 Sum_probs=187.9
Q ss_pred EEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 20 VAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
+++++++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999988 7899999999999999999999999999999999999999999999999875 258999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC---CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
||++.+++.+|++||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++||||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 160 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999999999987644444444445567888999999973 57899999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 161 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999754 8999999999999866 9999999999999988876653
No 73
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-53 Score=382.32 Aligned_cols=206 Identities=30% Similarity=0.435 Sum_probs=185.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQELA 94 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~~ 94 (291)
||+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..+||++|++.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 57899999999988999999999999999999999999999999999999999999999999876 35899999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
+++.+|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 9998999999987543334444445567889999999975 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEe--CCEEEEEech
Q psy6612 174 PILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMR--DDQYIGRLVH 224 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~--~G~i~~~~~~ 224 (291)
+.++..+.++|++++ +.|+|||++|||++++.. ||++++|+ +|+++.+++.
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999985 458999999999999976 99999998 5999887654
No 74
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=9.6e-53 Score=376.93 Aligned_cols=210 Identities=22% Similarity=0.360 Sum_probs=188.1
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~ 88 (291)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 67899999999988999999999999999999999999999999999999999999999999865 24999
Q ss_pred EcCCCCCCCCCCHHHHHHHhcccc--------CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 89 MPQELALHGELSIRETFRYYGYMF--------DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+||++.+++.+|+.||+.+..... +...+..++++.++++.+++.. .++++++||||||||++|||||+.+
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~ 161 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD 161 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998753211 1122334567888999999975 6889999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++|||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 162 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 162 PKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred CCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999975 6899999999999976 99999999999999988777643
No 75
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-53 Score=389.74 Aligned_cols=209 Identities=26% Similarity=0.429 Sum_probs=187.8
Q ss_pred EEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 20 VAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 20 l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
+++++++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 789999999974 5799999999999999999999999999999999999999999999999865
Q ss_pred --CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 --SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 --~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+.+||+||++ .++ ..|++||+.+.....+....+.++++.++++.++|. . .++++.+|||||||||+|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 2499999997 455 469999998765444555555667888999999996 4 58999999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++++.. |||+++|++|+++.+++++++..
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999754 8999999999999965 99999999999999999887654
No 76
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3e-53 Score=372.03 Aligned_cols=198 Identities=33% Similarity=0.539 Sum_probs=180.3
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
|++++++++|+++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4689999999888999999999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|+.||+.++...++. .++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 81 PGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred CccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 9999999999999876443332 1346778899999975 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 172 LDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999999999998778999999999999976 999999999998764
No 77
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.7e-53 Score=376.18 Aligned_cols=205 Identities=30% Similarity=0.454 Sum_probs=182.1
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC-----CCCccEEEECCEec-----------
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-----TLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~-----~p~~G~I~~~g~~~----------- 83 (291)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 46899999999889999999999999999999999999999999999999 99999999999874
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCCh-HHHHHHHHHHHHHcCCCC-CCCC--cCcCChhHHHHHHHHHHHhcC
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTD-DQIETRSKEILKLLELPP-AKKI--VGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~-~~~~--~~~LSgGqkQrv~iAral~~~ 159 (291)
+.++|+||++.++ .+|++||+.+....++... .+..+++.++++.+++.. .+++ +.+||||||||++|||||+.+
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 2499999999888 7899999987544333222 224567888999999975 4555 599999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
|++|||||||+|||+.++..+++.|++++++ +|||++|||++++.. ||++++|++|+++..+++++
T Consensus 160 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999876 999999999999875 99999999999998887654
No 78
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-53 Score=387.83 Aligned_cols=210 Identities=24% Similarity=0.358 Sum_probs=189.2
Q ss_pred eEEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
||+++|+++.|+. +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5889999999963 2599999999999999999999999999999999999999999999999874
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 ---SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 ---~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.+||+||++ .+++ .|+.||+.|....++.+..+.++++.++++.+++. . .++++.+||||||||++|||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 2489999997 5665 59999998865444555566677888999999995 3 5899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||++++.. ||++++|++|+++.+|+++++..
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999999998778999999999999965 99999999999999999888754
No 79
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.4e-52 Score=379.58 Aligned_cols=213 Identities=26% Similarity=0.417 Sum_probs=191.3
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------- 83 (291)
+++|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 4678999999999999999999999999999999999999999999999999999999999999764
Q ss_pred ---------CeEEEEcCCCCCCCCCCHHHHHHHhc-cccCCChHHHHHHHHHHHHHcCCCC-C-CCCcCcCChhHHHHHH
Q psy6612 84 ---------SDIGYMPQELALHGELSIRETFRYYG-YMFDMTDDQIETRSKEILKLLELPP-A-KKIVGALSGGQQRRIS 151 (291)
Q Consensus 84 ---------~~ig~v~q~~~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~-~~~~~~LSgGqkQrv~ 151 (291)
+.++|+||++.+++.+|++||+.+.. ...........+++.++++.+|+.. . ++++.+||||||||++
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 24899999999999999999997642 2223334445667889999999975 3 7889999999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+.+|++|||||||+|||+.+++.+.++|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhh
Confidence 9999999999999999999999999999999999998779999999999999976 99999999999999988776543
No 80
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-52 Score=376.74 Aligned_cols=209 Identities=29% Similarity=0.458 Sum_probs=188.1
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------------- 83 (291)
+|+++|++++|+++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 57899999999988999999999999999999999999999999999999999999999999864
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHh-ccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYY-GYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+.++|+||++.+++.+|+.||+.+. ....+....+..+++.++++.+|++. .++++.+||||||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2499999999999999999999642 22233334444567888999999975 688999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
++||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..++++++
T Consensus 162 llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 162 VLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999998778999999999999965 999999999999998887654
No 81
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-53 Score=387.49 Aligned_cols=210 Identities=24% Similarity=0.360 Sum_probs=187.8
Q ss_pred eEEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
+|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 5789999999974 4699999999999999999999999999999999999999999999999864
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 ---SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 ---~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral 156 (291)
..+||+||++ .++ .+|+.||+.+....++...++..+++.++++.++++ . .++++.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 2489999997 355 579999998754434444555667788999999996 4 6899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||++++.. ||++++|++|+++..++++++.+
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999998779999999999999976 99999999999999999887654
No 82
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-53 Score=371.25 Aligned_cols=200 Identities=32% Similarity=0.629 Sum_probs=181.2
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEcC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMPQ 91 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~q 91 (291)
|++++++++|+++++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 46899999999889999999999999 9999999999999999999999999999999999764 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred CCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999999999987554444444445567888999999975 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
|||+.++..+.+.|+++++ +.|||++|||++++.. ||++++|++|+++..
T Consensus 160 ~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 160 GLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999975 5899999999999965 999999999998764
No 83
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=6e-53 Score=371.22 Aligned_cols=199 Identities=28% Similarity=0.446 Sum_probs=179.4
Q ss_pred EEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------CeE
Q psy6612 20 VAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SDI 86 (291)
Q Consensus 20 l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~i 86 (291)
+++++++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999964 6899999999999999999999999999999999999999999999999865 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
+|++|++.+++.+|+.||+.+....++...++..+++.++++.++++. .++++.+||||||||++|||||+.+|+++||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 160 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999987644334344445567888999999975 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|++
T Consensus 161 DEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999997678999999999999976 999999999864
No 84
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-52 Score=379.32 Aligned_cols=211 Identities=23% Similarity=0.386 Sum_probs=188.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 68899999999988999999999999999999999999999999999999999999999999865 358999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh------cCCCE
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL------HNPKL 162 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~------~~p~l 162 (291)
||++.+++.+|++||+.+.........+...+.+.++++.+++.. .++++.+||||||||++|||||+ .+|++
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l 161 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 999998888999999987533222222334456788999999965 68899999999999999999999 59999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.++..+.+.|++++ ++|.|||++|||++++.. ||++++|++|+++..++++++.+
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 99999999999999999999999997 668999999999999975 99999999999999888777654
No 85
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-52 Score=378.01 Aligned_cols=212 Identities=25% Similarity=0.417 Sum_probs=188.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.+|+++|++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 478999999999989999999999999999999999999999999999999999999999999875 1389
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccc----------cCC-----ChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYM----------FDM-----TDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRIS 151 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~ 151 (291)
|+||++.+++.+|+.||+.+.... +.. ...+..+.+.++++.+|+.. .++++.+||||||||++
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 163 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE 163 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHH
Confidence 999999999999999999874221 110 11123356778899999965 68999999999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+.+|++|||||||+|||+.++..+++.|.+++++ |+|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 164 la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 164 IARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence 999999999999999999999999999999999999865 8999999999999966 99999999999999988877644
No 86
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-53 Score=385.31 Aligned_cols=211 Identities=23% Similarity=0.294 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
|++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.+|
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 578999999995 56799999999999999999999999999999999999999999999999875 2499
Q ss_pred EEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|+||++. .+...|++||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 160 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF 160 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999985 3566899999987644444455555677888999999976 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+++.|++++++|.|||++|||++++..||++++|++|+++..|+++++..
T Consensus 161 DEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 161 DEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999877999999999999996699999999999999998877654
No 87
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-53 Score=390.58 Aligned_cols=211 Identities=25% Similarity=0.411 Sum_probs=188.6
Q ss_pred eEEEEeEEEEECCE-----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNH-----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~-----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
+|+++|+++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48899999999753 599999999999999999999999999999999999999999999987532
Q ss_pred -----------------------CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CC
Q psy6612 84 -----------------------SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AK 136 (291)
Q Consensus 84 -----------------------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~ 136 (291)
+.+||+||++ .++ ..||+||+.|.....+.+.++..+++.++++.+|+. . .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 2489999986 344 469999998765545566666777889999999996 4 68
Q ss_pred CCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
+++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||++++.. |||+++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999998779999999999999865 999999999
Q ss_pred CEEEEEechhHHHHH
Q psy6612 216 DQYIGRLVHHDIVES 230 (291)
Q Consensus 216 G~i~~~~~~~~~~~~ 230 (291)
|+++.+++++++...
T Consensus 241 G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 241 GKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEECCHHHHhcC
Confidence 999999998887543
No 88
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.7e-52 Score=376.71 Aligned_cols=209 Identities=29% Similarity=0.449 Sum_probs=187.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-----ccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~---------- 83 (291)
||+++|++++|++..+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 578999999999889999999999999999999999999999999999999998 99999999875
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++ +|++||+.+.....+ .+..+..+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 24999999999988 899999987543333 23344556788899999996 4 5788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999976 4899999999999966 99999999999999988876643
No 89
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-52 Score=378.27 Aligned_cols=219 Identities=24% Similarity=0.422 Sum_probs=192.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
||+++|++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 58899999999999999999999999999999999999999999999999999999999999875 249999
Q ss_pred cCCCCCCCCCCHHHHHHHhcc----ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 90 PQELALHGELSIRETFRYYGY----MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
||++.+++.+|++||+.+... .++.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 161 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL 161 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999888999999987421 122212334556788999999965 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
|||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..++.+++... ..+...|
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~--~~~~~~~ 235 (255)
T PRK11231 162 LDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP--GLLRTVF 235 (255)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH--HHHHHHh
Confidence 999999999999999999999997678999999999999966 999999999999998887776543 3344444
No 90
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=7.5e-53 Score=370.31 Aligned_cols=199 Identities=33% Similarity=0.533 Sum_probs=179.7
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------CeEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~ig~ 88 (291)
++++|++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 4689999999988999999999999999999999999999999999999999999999999865 34999
Q ss_pred EcCCCCCCCCCCHHHHHHHhcc-ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 89 MPQELALHGELSIRETFRYYGY-MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
+||++.+++.+|+.||+.+... ..+....+..+++.++++.++++. .++++.+||||||||++|||||+.+|++||||
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 160 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999987532 223334445567888999999975 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
|||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|++
T Consensus 161 EP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999998778999999999999976 999999999864
No 91
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.5e-53 Score=370.90 Aligned_cols=196 Identities=27% Similarity=0.421 Sum_probs=175.4
Q ss_pred EEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEc
Q psy6612 22 VTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMP 90 (291)
Q Consensus 22 ~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~ 90 (291)
+++++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+|
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVF 81 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEe
Confidence 6889999987 8899999999999999999999999999999999999999999999999865 3589999
Q ss_pred CCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 91 QELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 91 q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
|++. .++.+|+.||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++||||||
T Consensus 82 q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 161 (211)
T cd03225 82 QNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEP 161 (211)
T ss_pred cChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9985 3567899999987543333334444567888999999965 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
|+|||+.++..+++.|++++++|.|||++|||++++.. ||++++|++|+
T Consensus 162 t~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 162 TAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999998678999999999999977 99999999884
No 92
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-53 Score=385.17 Aligned_cols=209 Identities=29% Similarity=0.432 Sum_probs=188.0
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeEE
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDIG 87 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ig 87 (291)
.+++++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 467899999999999999999999999999999999999999999999999999999999764 2599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
|+||++.+++.+|+.||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++||||
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999987544333334444567888999999975 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+|||+.++..+.+.|+++++ .|+|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999975 48999999999999866 99999999999999988877654
No 93
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.8e-53 Score=370.19 Aligned_cols=194 Identities=29% Similarity=0.396 Sum_probs=173.8
Q ss_pred EEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEEcCCCC
Q psy6612 22 VTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYMPQELA 94 (291)
Q Consensus 22 ~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v~q~~~ 94 (291)
++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.+||+||++.
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 5789999987 8899999999999999999999999999999999999999999999999875 36999999974
Q ss_pred -CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 95 -LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 95 -l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
.+..+|+.||+.++....+ . ..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+||
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 157 (205)
T cd03226 82 YQLFTDSVREELLLGLKELD--A--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157 (205)
T ss_pred hhhhhccHHHHHhhhhhhcC--c--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccC
Confidence 2345799999987543222 1 1246788999999975 68899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI 219 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~ 219 (291)
|+.+++.+.+.|++++++|.|||++||+++++.. ||++++|++|+++
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999997778999999999999976 9999999999874
No 94
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-52 Score=383.53 Aligned_cols=211 Identities=24% Similarity=0.389 Sum_probs=187.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------CeEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~ig 87 (291)
||+++|++++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 58899999999988899999999999999999999999999999999999999999999999875 2499
Q ss_pred EEcCCCCC-CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELAL-HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l-~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|+||++.+ +...|+.+|+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999753 344589999987543334444445567788999999965 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+.++|++++++|.|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999998678999999999999965 99999999999999998877654
No 95
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-52 Score=374.56 Aligned_cols=210 Identities=24% Similarity=0.451 Sum_probs=186.3
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.||++++++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 368899999999988999999999999999999999999999999999999999999999999864 2499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHc-CCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL-ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|++|++.+++.+|+.||+.+..... ......+.+.++++.+ ++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illl 161 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999899999998743221 1223344566777777 4654 5778999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+.+.|++++++|.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999998778999999999999865 99999999999999999887754
No 96
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-52 Score=384.11 Aligned_cols=213 Identities=22% Similarity=0.323 Sum_probs=191.2
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+.+|+++++++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 347899999999974 5799999999999999999999999999999999999999999999999876 35
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 86 IGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 86 ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
+||+||++. +++..|+.||+.+.....+...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999983 6667899999987644444455555677889999999976 68899999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.++..++++|++++++ |.|||++||+++++..||++++|++|+++..++.+++..
T Consensus 163 lLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999865 899999999999997799999999999999998776654
No 97
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-52 Score=389.84 Aligned_cols=213 Identities=18% Similarity=0.295 Sum_probs=191.2
Q ss_pred ceEEEEeEEEEEC----------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----
Q psy6612 18 HSVAVTSAYKKIG----------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~----------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---- 83 (291)
.+|+++|+++.|+ ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 4788999999995 25799999999999999999999999999999999999999999999999875
Q ss_pred --------CeEEEEcCCC--CCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHH
Q psy6612 84 --------SDIGYMPQEL--ALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRI 150 (291)
Q Consensus 84 --------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv 150 (291)
+.++|+||++ .+++.+|+.+++......+ +....+.++++.++++.+|+.. .++++++|||||||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 3599999998 5888899999987644332 3445556678899999999963 5899999999999999
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 151 ~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+|||||+.+|++||+||||++||+.++.+++++|+++++ .|.|||+||||++.+.. ||++++|.+|++++.|+.+++.
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999975 48999999999999976 9999999999999999988876
Q ss_pred HH
Q psy6612 229 ES 230 (291)
Q Consensus 229 ~~ 230 (291)
+.
T Consensus 244 ~~ 245 (327)
T PRK11308 244 NN 245 (327)
T ss_pred cC
Confidence 53
No 98
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-52 Score=383.20 Aligned_cols=212 Identities=28% Similarity=0.391 Sum_probs=189.7
Q ss_pred ceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------Ce
Q psy6612 18 HSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SD 85 (291)
Q Consensus 18 ~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~ 85 (291)
.+|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4788999999996 57899999999999999999999999999999999999999999999999875 24
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 86 IGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 86 ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
+||+||++. .+...|++||+.+....++.+..+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL 163 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999973 2345799999987544444555555677889999999976 68999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.++..++++|++++++ |.|||++||+++++.. |||+++|++|+++..|+++++..
T Consensus 164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999864 8999999999999975 99999999999999999887654
No 99
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-52 Score=374.96 Aligned_cols=212 Identities=28% Similarity=0.418 Sum_probs=187.3
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~-------- 83 (291)
+.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 2 KFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred cceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4578999999999988999999999999999999999999999999999999987 499999999865
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCC--ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iA 153 (291)
..++|+||++.+++.+|+.||+.+.....+. +.+...+++.++++.+++. . .++++.+||||||||++||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 2489999999999999999999875432221 2334455678889999873 2 5788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 162 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (253)
T PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999975 6899999999999866 99999999999999998877653
No 100
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-52 Score=388.15 Aligned_cols=218 Identities=26% Similarity=0.342 Sum_probs=191.6
Q ss_pred cccccccceEEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--
Q psy6612 11 PEIIEVKHSVAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-- 83 (291)
Q Consensus 11 ~~~~~~~~~l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-- 83 (291)
|....-+.+|+++|+++.|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++
T Consensus 13 ~~~~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 13 PNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGD 92 (320)
T ss_pred CCCCCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccc
Confidence 434444678999999999974 3699999999999999999999999999999999999999999999998543
Q ss_pred -----------------------CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CC
Q psy6612 84 -----------------------SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AK 136 (291)
Q Consensus 84 -----------------------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~ 136 (291)
+.+||+||++ .+++ .|++||+.+.....+.+.++..+++.++++.++++ . .+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 171 (320)
T PRK13631 93 KKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLE 171 (320)
T ss_pred ccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhc
Confidence 2489999997 4665 49999998754333445555667788999999996 4 68
Q ss_pred CCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
+++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||++++.. ||++++|++
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~ 251 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999999998778999999999999865 999999999
Q ss_pred CEEEEEechhHHHH
Q psy6612 216 DQYIGRLVHHDIVE 229 (291)
Q Consensus 216 G~i~~~~~~~~~~~ 229 (291)
|+++..|+++++..
T Consensus 252 G~i~~~g~~~~~~~ 265 (320)
T PRK13631 252 GKILKTGTPYEIFT 265 (320)
T ss_pred CEEEEeCCHHHHhc
Confidence 99999999887654
No 101
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-52 Score=388.69 Aligned_cols=212 Identities=22% Similarity=0.328 Sum_probs=188.9
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC----CCccEEEECCEec-------
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~----p~~G~I~~~g~~~------- 83 (291)
+|+++|+++.|+. ..+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5889999999976 579999999999999999999999999999999999997 4899999999886
Q ss_pred ------CeEEEEcCCC--CCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhHHHHH
Q psy6612 84 ------SDIGYMPQEL--ALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP----AKKIVGALSGGQQRRI 150 (291)
Q Consensus 84 ------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQrv 150 (291)
+.++|+||++ .+++.+|+.+++......+ +...++.++++.++++.+|+.. .++++++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 1499999998 5788899998886543332 3344556678899999999963 4789999999999999
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 151 ~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+|||||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||++++.. ||++++|.+|++++.|+.+++.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999985 58999999999999965 9999999999999999988876
Q ss_pred HH
Q psy6612 229 ES 230 (291)
Q Consensus 229 ~~ 230 (291)
+.
T Consensus 243 ~~ 244 (326)
T PRK11022 243 RA 244 (326)
T ss_pred hC
Confidence 53
No 102
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-52 Score=380.55 Aligned_cols=212 Identities=23% Similarity=0.380 Sum_probs=188.7
Q ss_pred ceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 18 HSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.+|
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 4688999999995 56799999999999999999999999999999999999999999999999875 2499
Q ss_pred EEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|+||++. .+...|+.||+.+.....+...+...+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil 161 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999974 3335799999987544334445555667889999999975 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..++++|++++++ |.|||++||+++++.. ||++++|++|+++..|+++++.+
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 162 DEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999999999865 8999999999999965 99999999999999999887754
No 103
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-52 Score=382.61 Aligned_cols=209 Identities=24% Similarity=0.390 Sum_probs=187.1
Q ss_pred EEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 20 VAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 20 l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 789999999964 4699999999999999999999999999999999999999999999999775
Q ss_pred --CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 --SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 --~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+.|||+||++ .+++ .|+.||+.+.....+...++..+++.++++.+|+. . .++++.+||||||||++|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 2489999997 4565 49999998764444455556667888999999996 4 57899999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999975 58999999999999865 99999999999999999877654
No 104
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-52 Score=376.81 Aligned_cols=212 Identities=25% Similarity=0.416 Sum_probs=188.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
.+|++++++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 468999999999988999999999999999999999999999999999999999999999999875 25999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccc-c---CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 89 MPQELALHGELSIRETFRYYGYM-F---DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~-~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
+||++.+++.+|+.||+.+.... . +.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 169 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCL 169 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999888889999999864321 1 1112233456788999999965 68899999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.+++.+.+.|.+++++ |.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 170 lLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 170 LLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999999999999999999999754 8999999999999965 99999999999999988877654
No 105
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-52 Score=364.55 Aligned_cols=212 Identities=28% Similarity=0.439 Sum_probs=190.2
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.||++++++..||..++|++|||++++||+++|+||||||||||||+|+|+.+|.+|+|.|+|+++ ..|+
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 578999999999999999999999999999999999999999999999999999999999999998 3499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcC-CCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE-LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
||||...+|+.|||.||+..+...... +.......+++.+.|- |.. .+++.++|||||||.++|||||+.+|++|+|
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 999999999999999999876543321 1122222677788775 444 6899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||.||-|.-.+++.+.|++++++ |.||++|.++...+.. +||.++|.+|+++.+|+.+++.++
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999965 7899999999999966 999999999999999999988765
No 106
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.6e-53 Score=355.97 Aligned_cols=209 Identities=25% Similarity=0.366 Sum_probs=187.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
|+.++++.++|+..+ -.++++|+.||+++|+|||||||||||++|+|++.|.+|+|+++|++. +.++++||
T Consensus 1 ~l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 1 MLALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred CccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 466789999997654 357889999999999999999999999999999999999999999986 56999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
+.++|..+||.+|+.++..-.-.-..+.+++++.++..+|+.. .++.|.+|||||||||+|||+|+++-+||+||||||
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFs 158 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFS 158 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchh
Confidence 9999999999999987543211113455778899999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||.-+.+++.++.+++ +++.|++||||+++++.. +|+++++++|+|.++|+.+++..
T Consensus 159 ALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 159 ALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred hcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999999999998 568999999999999977 99999999999999999887754
No 107
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-52 Score=365.54 Aligned_cols=200 Identities=25% Similarity=0.380 Sum_probs=176.9
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
++++|++++|+++.. |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|+
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 468999999987653 99999999999999999999999999999999999999999999876 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|+.||+.+.........+..++++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~ 158 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA 158 (211)
T ss_pred cccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999999999986532111112234557888999999975 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 172 LDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
||+.++..+++.|+++++ .|+|||++||+++++.. ||++++|++|+++..
T Consensus 159 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 159 LDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 999999999999999975 48999999999999966 999999999998754
No 108
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-52 Score=373.03 Aligned_cols=210 Identities=28% Similarity=0.386 Sum_probs=186.7
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec---------C
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI---------S 84 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~---------~ 84 (291)
+|++++++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++ +
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 58899999999988999999999999999999999999999999999999974 799999999875 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCC--ChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAral~ 157 (291)
.+||+||++.+++.+|+.||+.+....... ...+..+.+.++++.+++.. .++++.+||||||||++|||||+
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 599999999988889999999875432221 23444567888999999842 57889999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 99999999999999999999999999999864 7999999999999865 99999999999999998877654
No 109
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.8e-52 Score=368.33 Aligned_cols=198 Identities=30% Similarity=0.507 Sum_probs=174.5
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCCCCC-
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQELALH- 96 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~~l~- 96 (291)
++|++++|+++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||++.++
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~ 81 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDR 81 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccccc
Confidence 57899999988999999999999999999999999999999999999999999999999865 5699999998763
Q ss_pred -CCCCHHHHHHHhccccC----CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 97 -GELSIRETFRYYGYMFD----MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 97 -~~ltv~enl~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
..+|++||+.+...... .......+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 161 (213)
T cd03235 82 DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161 (213)
T ss_pred CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 33799999987532211 122334567888999999965 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEE
Q psy6612 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~ 220 (291)
|||+.++..+.+.|++++++|.|||++|||++++.. ||++++|++| ++.
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~ 211 (213)
T cd03235 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVA 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eee
Confidence 999999999999999998778999999999999976 9999999886 444
No 110
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-51 Score=375.88 Aligned_cols=215 Identities=25% Similarity=0.370 Sum_probs=190.7
Q ss_pred cccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+-+++|+++|++++|+++.+|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|+++ ..
T Consensus 3 ~~~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 3 ESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred ccccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 345689999999999999999999999999999999999999999999999999999999999999875 25
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccc----cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYM----FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
++|+||++.+++.+|++||+.+.... .....+....++.++++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p 162 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQET 162 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCC
Confidence 99999999999889999999864211 11112233456788999999965 68999999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
++|||||||+|||+.++..+.+.|.+++++ |.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 163 AIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999999999764 8999999999999866 99999999999999998877654
No 111
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-52 Score=376.73 Aligned_cols=202 Identities=28% Similarity=0.409 Sum_probs=183.2
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQE 92 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~ 92 (291)
..+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 4568899999999988999999999999999999999999999999999999999999999999875 469999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|++||+.+... . ....++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 90 ~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~ 163 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGA 163 (257)
T ss_pred ccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 999998999999986421 1 12356788999999975 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEech
Q psy6612 172 LDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~ 224 (291)
||+.++..+.+.|+++.+ .|+|||++|||++++.. ||++++|++|+++.+++.
T Consensus 164 LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 164 LDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 999999999999999864 58999999999999865 999999999999987754
No 112
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.9e-52 Score=369.10 Aligned_cols=203 Identities=26% Similarity=0.374 Sum_probs=177.1
Q ss_pred eEEEEeEEEEECCE----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIGNH----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
+|++++++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 57899999999765 799999999999999999999999999999999999999999999999864
Q ss_pred -CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCC-hHHHHHH-HHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMT-DDQIETR-SKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~-~~~~~~~-~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|++|++ .+++.+|+++|+.+....++.. .....+. +.++++.+++. . .++++.+||||||||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 2599999998 5677899999998754333221 1222222 35788999994 3 5889999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence 9999999999999999999999999999999865 8999999999999975 999999999998754
No 113
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.3e-52 Score=369.45 Aligned_cols=206 Identities=28% Similarity=0.470 Sum_probs=183.0
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~v 89 (291)
|+++|+++.|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 4689999999988999999999999999999999999999999999999999999999999775 249999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcC-CCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE-LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
||++.+++.+|+.||+.+....++.. ..+.+.++++.++ +.. .++++.+||||||||++|||||+.+|+++||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999999999998754333222 1234566777776 444 688999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
||+|||+.++..+.++|.+++++ |+|||++||+++++.. ||++++|++|+++..++.+++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999864 8999999999999976 9999999999999999887763
No 114
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-52 Score=374.42 Aligned_cols=209 Identities=28% Similarity=0.439 Sum_probs=186.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~--------- 83 (291)
.+|++++++++|+++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 368899999999988999999999999999999999999999999999999975 899999999764
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++ +|++||+.+....++.+.....+++.++++.+++. . .++++.+|||||||||+|||||
T Consensus 91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 169 (258)
T PRK14268 91 LRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169 (258)
T ss_pred HhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH
Confidence 24999999999888 89999998764434444444455678899999883 2 5788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+.+|++|||||||+|||+.++..++++|+++++ ++|||++|||++++.. ||++++|++|+++..++++++.
T Consensus 170 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999964 7999999999999966 9999999999999998887664
No 115
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-52 Score=380.43 Aligned_cols=214 Identities=25% Similarity=0.336 Sum_probs=190.3
Q ss_pred ccceEEEEeEEEEECC------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------
Q psy6612 16 VKHSVAVTSAYKKIGN------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------ 83 (291)
+++||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80 (280)
T ss_pred CCceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccH
Confidence 4678999999999963 5799999999999999999999999999999999999999999999999775
Q ss_pred ----CeEEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 ----SDIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 ----~~ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+.+||+||++. .+...|+.+|+.|.....+....+..+++.++++.+|+.. .++++.+||||||||++|||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 24899999974 2334699999987654444455555677889999999976 68999999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.+|+++||||||+|||+.++..+++.|+++++ .|.|||++||+++++..||++++|++|+++..++++++..
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999975 4899999999999986699999999999999999887654
No 116
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=9.7e-52 Score=372.90 Aligned_cols=210 Identities=28% Similarity=0.460 Sum_probs=187.5
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------------
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------------- 83 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------------- 83 (291)
|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 4689999999988999999999999999999999999999999999999999999999999764
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHhcc-ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 ------SDIGYMPQELALHGELSIRETFRYYGY-MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ------~~ig~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|++|++.+++.+|+.||+.+... ..+.......+.+.++++.+++.. .++.+.+||||||||++||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 249999999999999999999986422 123334445567888999999965 688999999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T TIGR03005 161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236 (252)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999764 8999999999999965 99999999999999988776643
No 117
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-51 Score=368.17 Aligned_cols=210 Identities=23% Similarity=0.319 Sum_probs=185.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
||+++|++++|++.. .++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 578999999998654 399999999999999999999999999999999999999999999875 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|+.||+.+.........+...+++.++++.++++. .++++.+||||||||++||||++.+|+++||||||+
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 158 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFS 158 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999999976422110112234566888999999965 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+.+++.+.++|+++.+ .|+|||++||+++++.. ||++++|++|+++..++.+++...
T Consensus 159 gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 159 ALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999975 48999999999999866 999999999999999988776654
No 118
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-51 Score=377.90 Aligned_cols=211 Identities=27% Similarity=0.403 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------CeE
Q psy6612 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SDI 86 (291)
Q Consensus 19 ~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~i 86 (291)
||+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++ +.+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 578999999996 46799999999999999999999999999999999999999999999999875 248
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 87 GYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 87 g~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
+|+||++. .+...|+.||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 160 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999973 3334699999986533333444455567888999999975 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+|||+.++..+++.|++++++|.|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 161 lDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999998678999999999999975 99999999999999999887654
No 119
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.7e-51 Score=372.38 Aligned_cols=210 Identities=24% Similarity=0.393 Sum_probs=187.2
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEc
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMP 90 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~ 90 (291)
|+++|+++.|+++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 5789999999999999999999999999999999999999999999999999999999999875 2499999
Q ss_pred CCCCCCCCCCHHHHHHHhccc----cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 91 QELALHGELSIRETFRYYGYM----FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|++.+++.+|+.||+.+.... +.....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++||
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 161 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLL 161 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999888889999999874211 11122233456788999999965 6899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+.+.|++++++|.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 162 DEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred cCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999998778999999999999965 99999999999999998877654
No 120
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.9e-52 Score=395.75 Aligned_cols=207 Identities=29% Similarity=0.441 Sum_probs=187.8
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE----ec-------------Ce
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR----QI-------------SD 85 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~----~~-------------~~ 85 (291)
..+.++||...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+ ++ ++
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 34556778888999999999999999999999999999999999999999999999996 22 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
++|+||++.+++.+|+.||+.+.....+.+..+.++++.++++.+|+.. .++++.+|||||||||+|||||+.+|++||
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999998755555555566678899999999976 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+|||+.++..+.+.|.+++++ ++|||++|||++++.. ||++++|++|+++..|+++++..
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999864 8999999999999965 99999999999999999988754
No 121
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-51 Score=377.98 Aligned_cols=209 Identities=24% Similarity=0.382 Sum_probs=185.5
Q ss_pred EEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 20 VAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 20 l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
|++++++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 789999999974 4699999999999999999999999999999999999999999999999764
Q ss_pred --CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 --SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 --~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+.++|+||++ .+++ .|++||+.+....++...++..+++.++++.+++. . .++++.+||||||||++|||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 2489999997 4555 69999998754333444445556778899999996 3 58899999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999998678999999999999965 99999999999999988877644
No 122
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-52 Score=370.98 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=184.5
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 57899999999988999999999999999999999999999999999999999999999999875 359999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
||++.+++ .|+.||+.+.....+ ....++.++++.+++. . .++++.+||||||||++|||||+.+|++|||||
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 157 (241)
T PRK14250 83 FQQPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157 (241)
T ss_pred ecCchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99998887 599999876432221 1234677889999996 3 578999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+|||+.++..+.+.|+++++ .|.|||++|||++++.. ||++++|++|+++..+++.++..
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 9999999999999999999976 48999999999999876 99999999999999888877643
No 123
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.8e-51 Score=385.54 Aligned_cols=214 Identities=23% Similarity=0.352 Sum_probs=190.8
Q ss_pred cceEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECCEec------
Q psy6612 17 KHSVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQI------ 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~------ 83 (291)
+.+|+++|+++.|+ ...+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 45789999999994 367999999999999999999999999999999999999996 99999999875
Q ss_pred -------CeEEEEcCCC--CCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhHHHH
Q psy6612 84 -------SDIGYMPQEL--ALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP----AKKIVGALSGGQQRR 149 (291)
Q Consensus 84 -------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQr 149 (291)
+.|+|+||++ .+++.+|+.+++......+ +....+..+++.++++.+++.. .++++++|||||+||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 2599999998 6889999999987644333 2445556678889999999963 367999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
|+|||||+.+|++||+||||+|||+.++..++++|++++++ |.|+|++|||++.+.. ||++++|.+|++++.|+.+++
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i 249 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999854 8999999999999976 999999999999999998887
Q ss_pred HHH
Q psy6612 228 VES 230 (291)
Q Consensus 228 ~~~ 230 (291)
...
T Consensus 250 ~~~ 252 (330)
T PRK09473 250 FYQ 252 (330)
T ss_pred HhC
Confidence 653
No 124
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-52 Score=379.45 Aligned_cols=213 Identities=21% Similarity=0.281 Sum_probs=190.6
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc---cEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA---GTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~~~-------- 83 (291)
+.+|+++++++.|++ +++++++||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.++
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 347899999999964 579999999999999999999999999999999999999987 8999999876
Q ss_pred -CeEEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 84 -SDIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 84 -~~ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+.+||+||++. +++..|++||+.+.....+.+..+..+++.++++.+++.. .++++.+|||||+||++|||||+.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 35999999984 6667899999987544444455555677889999999976 68999999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++..||++++|++|+++..++++++..
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 163 KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999754 899999999999996799999999999999999877654
No 125
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.6e-51 Score=374.62 Aligned_cols=211 Identities=26% Similarity=0.429 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEC---------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------
Q psy6612 19 SVAVTSAYKKIG---------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83 (291)
Q Consensus 19 ~l~~~~l~~~~~---------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------ 83 (291)
||+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 688999999995 36899999999999999999999999999999999999999999999999865
Q ss_pred ------CeEEEEcCCC--CCCCCCCHHHHHHHhccc-cCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHH
Q psy6612 84 ------SDIGYMPQEL--ALHGELSIRETFRYYGYM-FDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 ------~~ig~v~q~~--~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~i 152 (291)
+.++|+||++ .+++.+|+.||+.+.... .........+++.++++.+++. . .++++.+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 2499999997 466788999999764322 2233334456788899999995 4 588999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+++|++|||||||+|||+.++..+++.|++++++ |+|||++|||++.+.. ||++++|++|+++..++++++..
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 99999999999999999999999999999999999864 8999999999999975 99999999999999999887653
No 126
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-52 Score=377.75 Aligned_cols=212 Identities=23% Similarity=0.301 Sum_probs=188.5
Q ss_pred ceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
.|++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4788999999995 56899999999999999999999999999999999999999999999999875 248
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 87 GYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 87 g~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
+|+||++. .++.+|++||+.+.....+...++.+.++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII 165 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999984 6677899999987543333444445667888999999975 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+|||+.++..++++|++++++ ++|||++||+++++..||++++|++|+++..++.+++..
T Consensus 166 LDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 166 FDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999765 589999999999987799999999999999888776544
No 127
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.1e-51 Score=376.11 Aligned_cols=213 Identities=21% Similarity=0.303 Sum_probs=187.5
Q ss_pred cceEEEEeEEEEECC---------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----
Q psy6612 17 KHSVAVTSAYKKIGN---------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---- 83 (291)
++||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 467899999999962 4799999999999999999999999999999999999999999999999875
Q ss_pred -----CeEEEEcCCCC--CCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 -----SDIGYMPQELA--LHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 -----~~ig~v~q~~~--l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++. +++.+|+.+++.+..... .....+..+.+.++++.+++. . .++++.+||||||||++||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 25999999975 677789999997654332 233344456788899999994 4 5788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+.+.|.+++++ |.|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 9999999999999999999999999999999999754 8999999999999976 99999999999999888776654
No 128
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.6e-51 Score=368.73 Aligned_cols=207 Identities=24% Similarity=0.284 Sum_probs=181.9
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEECCEec----------CeEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~----------~~ig 87 (291)
|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 46899999999889999999999999999999999999999999999995 79999999999864 1289
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccC-------CChHHHHHHHHHHHHHcCCC-C-CCCCcC-cCChhHHHHHHHHHHHh
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFD-------MTDDQIETRSKEILKLLELP-P-AKKIVG-ALSGGQQRRISFAVSLL 157 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~-~-~~~~~~-~LSgGqkQrv~iAral~ 157 (291)
|++|++.+++.+|+.||+.+...... ....+..+++.++++.+++. . .++++. +||||||||++|||||+
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 99999999999999999976432211 12233345778899999996 3 577787 59999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEEeCCEEEEEechhH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i~~~~~~~~ 226 (291)
.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..+++++
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999998778999999999999964 79999999999998887653
No 129
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.7e-51 Score=364.85 Aligned_cols=203 Identities=32% Similarity=0.541 Sum_probs=184.2
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----CeEEEEcCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----SDIGYMPQELA 94 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----~~ig~v~q~~~ 94 (291)
|++++++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 4689999999989999999999999999999999999999999999999999999999999865 46999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
+++.+|++||+.+....++.. +.++.++++.++++. .++++.+||||||||++||||++.+|++|||||||+|||
T Consensus 81 ~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred ccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 999899999998754433322 245778899999976 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
+.++..+++.|++++++|.|||++|||++++.. ||++++|++|+++..+++.+
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999998778999999999999965 99999999999999887653
No 130
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-51 Score=370.42 Aligned_cols=209 Identities=28% Similarity=0.382 Sum_probs=183.4
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~--------- 83 (291)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 35778999999998899999999999999999999999999999999999974 6899999999765
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+++ .|+.||+.+.....+. ..+...+++.++++.+++.. .++++.+|||||||||+||||
T Consensus 85 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 163 (253)
T PRK14242 85 LRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARA 163 (253)
T ss_pred HhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 24999999999888 5999999875433332 22334567788899999842 478899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|+.+|++|||||||+|||+.++..+.++|+++++ ++|||++|||++++.. ||++++|++|+++..++++++.
T Consensus 164 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 164 LAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999964 7899999999999966 9999999999999998877654
No 131
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2e-51 Score=373.10 Aligned_cols=211 Identities=29% Similarity=0.451 Sum_probs=187.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECCEec----------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQI---------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~---------- 83 (291)
..+|+++|++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 45788999999999999999999999999999999999999999999999999986 49999999765
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccc--------cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYM--------FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRI 150 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv 150 (291)
+.++|+||++.+++.+|++||+.+.... .+....+.+.++.++++.+++.. .++++.+||||||||+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence 1489999999999999999999864311 01112334567888999999965 6889999999999999
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 151 ~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++++.. ||++++|++|+++..++++++
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999999999999999975 48999999999999865 999999999999999998775
No 132
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-51 Score=376.87 Aligned_cols=213 Identities=22% Similarity=0.293 Sum_probs=189.5
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
+.+|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 2 NKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred CceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhc
Confidence 347899999999974 3599999999999999999999999999999999999999999999999875 2
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 85 DIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 85 ~ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
.+||+||++. +++..|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 4999999984 5667899999987543334444555567889999999965 6889999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.++..+++.|++++++ |.|||++||+++++..||++++|++|+++..++++++..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999865 899999999999997799999999999999998877654
No 133
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-51 Score=365.66 Aligned_cols=210 Identities=34% Similarity=0.487 Sum_probs=188.9
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
|++++++++|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 4689999999999999999999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|+.+|+.+....++.......+++.++++.+++.. .++.+.+||+|||||++|||||+.+|+++||||||+|
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998999999987544444444445567788999999975 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 172 LDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.++..+.+.|++++++ |.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999999864 8999999999999865 99999999999998887765543
No 134
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.2e-51 Score=406.29 Aligned_cols=212 Identities=26% Similarity=0.413 Sum_probs=190.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~i 86 (291)
+.||+++|++++|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++ +.+
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 2 QALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred CceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4578999999999988999999999999999999999999999999999999999999999999865 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhcccc---C-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMF---D-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~---~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+|+||++.+++.+|++||+.++...+ + .+..+.++++.++++.+++.. .++++++|||||||||+|||||+.+|+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998753321 1 223344567888999999976 689999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++.
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 162 VIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999998778999999999999976 9999999999999988877653
No 135
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-51 Score=370.85 Aligned_cols=211 Identities=25% Similarity=0.359 Sum_probs=185.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~-------- 83 (291)
+.+|++++++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 4578999999999988899999999999999999999999999999999999987 589999999764
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|+||++.+++ +|++||+.+.....+. ......+++.++++.+++. . .++++.+||||||||++|||
T Consensus 85 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 24999999998885 8999999875433322 2334456778889998872 2 57889999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.+|++|||||||+|||+.++..++++|++++ ++.|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 238 (254)
T PRK14273 164 TLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238 (254)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999996 47899999999999866 99999999999999998877654
No 136
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-51 Score=384.34 Aligned_cols=211 Identities=20% Similarity=0.319 Sum_probs=185.6
Q ss_pred eEEEEeEEEEE----CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC----CCccEEEECCEec-------
Q psy6612 19 SVAVTSAYKKI----GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~----~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~----p~~G~I~~~g~~~------- 83 (291)
+|+++|++++| +...+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|+++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 68899999999 45789999999999999999999999999999999999996 5899999999875
Q ss_pred ------CeEEEEcCCCC--CCCCCCHHHHHHHhcccc---C---CChHHHHHHHHHHHHHcCCCC----CCCCcCcCChh
Q psy6612 84 ------SDIGYMPQELA--LHGELSIRETFRYYGYMF---D---MTDDQIETRSKEILKLLELPP----AKKIVGALSGG 145 (291)
Q Consensus 84 ------~~ig~v~q~~~--l~~~ltv~enl~~~~~~~---~---~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgG 145 (291)
+.|+|+||++. +++.+|+.+++.+....+ + ....+.++++.++++.+||.. .++++.+||||
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG 162 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEG 162 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 25999999985 678899999997532111 1 112344567889999999963 37899999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 146 QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 146 qkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
|||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||+||||++++.. ||++++|.+|++++.|+
T Consensus 163 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~ 242 (330)
T PRK15093 163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999864 8999999999999976 99999999999999999
Q ss_pred hhHHHH
Q psy6612 224 HHDIVE 229 (291)
Q Consensus 224 ~~~~~~ 229 (291)
.+++..
T Consensus 243 ~~~i~~ 248 (330)
T PRK15093 243 SKELVT 248 (330)
T ss_pred HHHHHh
Confidence 888764
No 137
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-51 Score=374.74 Aligned_cols=214 Identities=25% Similarity=0.336 Sum_probs=189.7
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
.++|++++++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 347889999999975 4699999999999999999999999999999999999999999999999875 25
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 86 IGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 86 ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
++|+||++. +++..|+.+|+.+.....+...+...+++.++++.+++.. .++++.+||+|||||++|||||+.+|++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999985 6777899999987544333444455567788999999965 68899999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||||+|||+.++..+++.|++++++ |+|||++||+++++..||++++|++|+++..++++++.+.
T Consensus 165 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 165 ILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999754 8999999999999866999999999999999988776543
No 138
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-51 Score=369.62 Aligned_cols=211 Identities=25% Similarity=0.380 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~--------- 83 (291)
.+++++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++
T Consensus 3 ~~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 3 KRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred ccEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 368899999999988999999999999999999999999999999999999974 799999999764
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+++.+|++||+.+....++. ......+.+.++++.+++. . .++++.+|||||||||+||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 2499999999999999999999875433332 2344456778889999883 2 578899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEe------CCEEEEEechhHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMR------DDQYIGRLVHHDIV 228 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~------~G~i~~~~~~~~~~ 228 (291)
|+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||+++++.. ||++++|+ +|++++.++++++.
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 9999999999999999999999999999999964 6899999999999965 99999997 79999999887764
Q ss_pred H
Q psy6612 229 E 229 (291)
Q Consensus 229 ~ 229 (291)
.
T Consensus 242 ~ 242 (258)
T PRK14241 242 S 242 (258)
T ss_pred h
Confidence 3
No 139
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-51 Score=367.40 Aligned_cols=212 Identities=30% Similarity=0.408 Sum_probs=187.4
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~------- 83 (291)
++.+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 1 MKIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred CccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 46788999999999988999999999999999999999999999999999999875 799999999875
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++ +|++||+.+....++. ...+..+++.++++.+++. . .++++.+||+|||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 159 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIA 159 (251)
T ss_pred HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 24999999999887 8999999875433332 2334455677889999873 2 4788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14270 160 RTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFL 235 (251)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhc
Confidence 999999999999999999999999999999999976 5899999999999876 99999999999999998887643
No 140
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-51 Score=370.32 Aligned_cols=212 Identities=27% Similarity=0.394 Sum_probs=187.1
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~------- 83 (291)
...+|+++|++++|++.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++
T Consensus 10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 3567889999999998899999999999999999999999999999999999986 5899999999775
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++ +|++||+.+....+ +.+..+..+++.++++.+++. . .++++.+||||||||++||
T Consensus 90 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 168 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIA 168 (260)
T ss_pred HHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 24999999999887 79999998754322 234444556788899999973 2 4788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+.+.|++++ ++.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 169 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (260)
T PRK10744 169 RGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFT 244 (260)
T ss_pred HHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999996 47899999999999965 99999999999999998877644
No 141
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-51 Score=376.59 Aligned_cols=213 Identities=24% Similarity=0.344 Sum_probs=185.7
Q ss_pred ccceEEEEeEEEEECCE-----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNH-----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~-----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------- 83 (291)
+...|+++|++++|+++ ++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 3 ~~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 3 FSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred ccceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccc
Confidence 34568999999999764 499999999999999999999999999999999999999999999999763
Q ss_pred -------CeEEEEcCCCC--CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHH
Q psy6612 84 -------SDIGYMPQELA--LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 -------~~ig~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~i 152 (291)
+.++|++|++. +++ .|+.||+.+.....+...+...+++.++++.+++. . .++++.+||||||||++|
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 24899999973 444 59999998754333334444456778899999994 4 688999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999975 48999999999999865 99999999999999988776643
No 142
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.7e-51 Score=369.82 Aligned_cols=214 Identities=24% Similarity=0.409 Sum_probs=187.6
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe-----c-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ-----I------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-----~------- 83 (291)
.+.+|++++++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 3 DQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred CCceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 3558999999999988899999999999999999999999999999999999999999999999986 3
Q ss_pred ------CeEEEEcCCCC--CCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHH
Q psy6612 84 ------SDIGYMPQELA--LHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 ------~~ig~v~q~~~--l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~i 152 (291)
..++|+||++. +++.+|+.+|+.+....++. ...+...++.++++.+++. . .++++.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 14999999984 67778999998753222221 2234456778899999995 3 588999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 241 (258)
T PRK11701 163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLD 241 (258)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998754 8999999999999975 99999999999999998877643
No 143
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-51 Score=360.64 Aligned_cols=197 Identities=31% Similarity=0.474 Sum_probs=175.8
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDI 86 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~i 86 (291)
+++ +++|+|+++.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++ +.+
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 445 89999999876 99999999 99999999999999999999999999999999999764 259
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
+|+||++.+++.+|+.+|+.+....+ .....++++.++++.+++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999998754322 22334557888999999975 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEe
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~ 222 (291)
||||+|||+.+++.+.++|++++++ |+|||++||+++++.. ||++++|++|+++..|
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999765 8999999999999965 9999999999987653
No 144
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-51 Score=366.56 Aligned_cols=213 Identities=25% Similarity=0.367 Sum_probs=187.2
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC--C---CccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--L---DAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~------- 83 (291)
+++.|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++
T Consensus 1 ~~~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 1 MNNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred CCcEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 3677999999999998899999999999999999999999999999999999986 4 689999999875
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++.+|+.||+.+.....+ ....+..+++.++++.+++.. .++.+.+||||||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 249999999999999999999986533322 223344566788899999842 4678999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999975 5899999999999965 99999999999999998877643
No 145
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-51 Score=385.97 Aligned_cols=204 Identities=26% Similarity=0.440 Sum_probs=184.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------Ce
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ 85 (291)
||++ |++|+|+++.+ |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 5777 99999988653 89999999999999999999999999999999999999999999764 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
++|+||++.+|+.+|++||+.+... ....+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llL 151 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLL 151 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999987532 122456788999999976 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
|||||+|||+.++..+++.|++++++ |.|+|++|||++++.. ||++++|++|+++..++++++....
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999765 8999999999999976 9999999999999999998886643
No 146
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-51 Score=404.14 Aligned_cols=212 Identities=28% Similarity=0.404 Sum_probs=191.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEECCEec----------C
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL--DAGTIKLSFRQI----------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~----------~ 84 (291)
+.||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++ +
T Consensus 3 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 3 EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred CceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4579999999999998999999999999999999999999999999999999986 899999999875 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhcccc--C-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMF--D-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~--~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
.+||+||++.+++.+|++||+.+....+ + .+.+...+++.++++.+++.. .++++++|||||||||+|||||+.+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 4999999999999999999998764322 1 233344567889999999975 68999999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
++|||||||+|||+.++..++++|.+++++|+|||++|||++++.. ||++++|++|+++..++.+++.
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 9999999999999999999999999998778999999999999976 9999999999999998877654
No 147
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-51 Score=366.61 Aligned_cols=209 Identities=32% Similarity=0.444 Sum_probs=184.7
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC---CCccEEEECCEec---------CeE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT---LDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~---------~~i 86 (291)
+++++|+++.|+++.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|+++|+++ +.+
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4678999999998899999999999999999999999999999999999974 7999999999876 259
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCC--ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+|+||++.+|+ .|++||+.+.....+. .....+.++.++++.+++. . .++++.+||||||||++|||||+.+
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999987 6999999875433332 1234455678899999994 2 4678899999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+++||||||+|||+.++..+.+.|+++.+ ++|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999864 8999999999999965 99999999999999998877654
No 148
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.1e-51 Score=359.54 Aligned_cols=202 Identities=24% Similarity=0.380 Sum_probs=178.1
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
++++|++++|+. .+.|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 468999999974 57899999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|+.||+.+............++++.++++.++++. .++++.+||||||||++|||||+.+|+++||||||+|
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 158 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158 (213)
T ss_pred CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 999999999999976432111112233456788999999965 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 172 LDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
||+.++..+.++|+++.++ |.|||++||+++++.. ||++++|++|++++.+.
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999754 8999999999999865 99999999999987653
No 149
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6.6e-51 Score=364.66 Aligned_cols=210 Identities=30% Similarity=0.479 Sum_probs=188.8
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
+++++++++|+++++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 4689999999999999999999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+|+.+|+.||+.+....++.......+.+.++++.+++.. .++.+.+||+||+||++|||||+.+|+++||||||+|
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999999999987544333333344566788999999965 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 172 LDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.++..+++.|.+++++ ++|||++||+++++.. ||++++|++|+++..++.+++.+
T Consensus 161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999765 8999999999999866 99999999999999988776643
No 150
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-51 Score=368.29 Aligned_cols=214 Identities=25% Similarity=0.382 Sum_probs=187.7
Q ss_pred ccccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC--C---CccEEEECCEec-----
Q psy6612 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--L---DAGTIKLSFRQI----- 83 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~----- 83 (291)
.+-+.+|+++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++
T Consensus 7 ~~~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 7 VMKQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred hcCCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 344668999999999998899999999999999999999999999999999999987 3 699999999865
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHH
Q psy6612 84 ------SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRIS 151 (291)
Q Consensus 84 ------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~ 151 (291)
+.+||+||++.+++. |++||+.+....++. ...+..+++.++++.+++. . .++++.+||||||||++
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred CHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 249999999998885 999999875443332 2344455677889998884 2 47889999999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++++.. ||++++|++|+++.+|+++++..
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999999999999999999999975 7899999999999865 99999999999999999887654
No 151
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-51 Score=403.71 Aligned_cols=213 Identities=23% Similarity=0.342 Sum_probs=191.4
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~i 86 (291)
..+|+++|++++|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++ +.+
T Consensus 3 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred CceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4578999999999988999999999999999999999999999999999999999999999999875 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhcc----ccCC---ChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 87 GYMPQELALHGELSIRETFRYYGY----MFDM---TDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~----~~~~---~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
||+||++.+++.+|+.||+.+... .++. +..+.++++.++++.+|+.. .++++++|||||||||+|||||+.
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 999999999999999999976432 1121 22344567888999999975 689999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 999999999999999999999999999998779999999999999976 99999999999999988877643
No 152
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.6e-51 Score=385.58 Aligned_cols=203 Identities=28% Similarity=0.443 Sum_probs=182.5
Q ss_pred eEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeEEEEc
Q psy6612 24 SAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDIGYMP 90 (291)
Q Consensus 24 ~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ig~v~ 90 (291)
|++++|+++.+ ++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+|
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 78999988764 89999999999999999999999999999999999999999999764 3499999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+|+.+|++||+.+..... ...+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||
T Consensus 82 q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt 159 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999999998754322 22334556888999999976 68999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 170 VGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+|||+.++..+++.|++++++ |+|||++|||++++.. ||++++|++|+++..++++++...
T Consensus 160 s~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 160 AALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 999999999999999999865 8999999999999976 999999999999999998877543
No 153
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-51 Score=363.43 Aligned_cols=209 Identities=31% Similarity=0.472 Sum_probs=187.3
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
|++++++++|++. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4679999999865 89999999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+||||||||++|||||+.+|++++|||||+|
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 999999999999987543333334445567788999999965 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 172 LDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.+++.+++.|++++.+ |.|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999754 8999999999999875 99999999999999988776644
No 154
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-52 Score=354.08 Aligned_cols=213 Identities=25% Similarity=0.436 Sum_probs=198.7
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------- 83 (291)
+.|+++++.|+||...+|++||++..+|+++.|||.+||||||+||||+-+..|+.|.|.++|+.+
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 467889999999999999999999999999999999999999999999999999999999999876
Q ss_pred --------CeEEEEcCCCCCCCCCCHHHHHHH-hccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHH
Q psy6612 84 --------SDIGYMPQELALHGELSIRETFRY-YGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 --------~~ig~v~q~~~l~~~ltv~enl~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iA 153 (291)
.++|+|||+++|+..||+.||+.- +....+.++.+..++++.++.++|+.+ .+.+|..||||||||++||
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 248999999999999999999864 233457788888999999999999976 6899999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.|.+++. +.+++++++|.|-++|+|++++..
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~n 242 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcC
Confidence 99999999999999999999999999999999999999999999999999987 899999999999999999988654
No 155
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-50 Score=369.50 Aligned_cols=210 Identities=24% Similarity=0.403 Sum_probs=185.5
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~-------- 83 (291)
+.+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 4578999999999988999999999999999999999999999999999999974 899999999775
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCC--ChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++. |+.||+.+....++. +.....+++.++++.+++.. .++++.+||||||||++||
T Consensus 97 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 248999999998875 999999875433322 23334566788999999842 4678999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 176 RAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999975 6899999999999966 9999999999999999877664
No 156
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.8e-51 Score=357.72 Aligned_cols=192 Identities=34% Similarity=0.505 Sum_probs=173.4
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeEEE
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDIGY 88 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ig~ 88 (291)
++|+++.|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 36899999988999999999999999999999999999999999999999999999999873 25999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
++|++.+++.+|++||+.+.....+.......+++.++++.++++. .++++.+||+|||||++|||||+.+|++|||||
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999999999987544334444455667889999999965 688999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM 213 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l 213 (291)
||+|||+.++..+.+.|+++.++|.|||++||+++.+..||++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999986789999999999977669999875
No 157
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-50 Score=369.73 Aligned_cols=219 Identities=26% Similarity=0.339 Sum_probs=187.2
Q ss_pred CCcccccccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec
Q psy6612 9 IDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI 83 (291)
Q Consensus 9 ~~~~~~~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~ 83 (291)
++|..-..+++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++
T Consensus 11 ~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 11 IAPFPEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred cccCCCCCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 33433334568999999999998899999999999999999999999999999999999864 7899999999765
Q ss_pred -----------CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhH
Q psy6612 84 -----------SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQ 146 (291)
Q Consensus 84 -----------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGq 146 (291)
+.++|+||++.+++. |++||+.+.....+. ......+.+.++++.+++. . .++++.+|||||
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 169 (268)
T PRK14248 91 LDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQ 169 (268)
T ss_pred ccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHH
Confidence 249999999998885 999999865332222 1223345567788888873 2 478899999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 147 kQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
|||++|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++++|++|+++..++++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999965 6899999999999865 9999999999999999877
Q ss_pred HHHH
Q psy6612 226 DIVE 229 (291)
Q Consensus 226 ~~~~ 229 (291)
++..
T Consensus 249 ~~~~ 252 (268)
T PRK14248 249 QIFT 252 (268)
T ss_pred HHHh
Confidence 6644
No 158
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.4e-51 Score=401.50 Aligned_cols=211 Identities=26% Similarity=0.384 Sum_probs=191.5
Q ss_pred cccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------C
Q psy6612 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------S 84 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~ 84 (291)
++..+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++ .
T Consensus 7 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 7 TAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred CCCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 345689999999999998999999999999999999999999999999999999999999999999875 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
.+||+||++.+++.+|++||+.+.... ....++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ll 162 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL 162 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 499999999999999999999875321 1234567888999999975 68999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..|+++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999998779999999999999976 99999999999999998877643
No 159
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-50 Score=369.81 Aligned_cols=211 Identities=24% Similarity=0.327 Sum_probs=185.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC--------ccEEEECCEec-------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD--------AGTIKLSFRQI------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~--------~G~I~~~g~~~------- 83 (291)
||+++|++++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 578999999999999999999999999999999999999999999999999998 99999999875
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhcccc----CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMF----DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++.+|++||+.+..... +....+..+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 160 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL 160 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 23899999987666689999998743211 1111233456788999999975 6889999999999999999999
Q ss_pred h---------cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 157 L---------HNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 157 ~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..++++
T Consensus 161 ~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (272)
T PRK13547 161 AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPA 240 (272)
T ss_pred hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 9 599999999999999999999999999999765 8999999999999965 9999999999999999887
Q ss_pred HHHH
Q psy6612 226 DIVE 229 (291)
Q Consensus 226 ~~~~ 229 (291)
++.+
T Consensus 241 ~~~~ 244 (272)
T PRK13547 241 DVLT 244 (272)
T ss_pred HHcC
Confidence 7644
No 160
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-50 Score=364.55 Aligned_cols=210 Identities=30% Similarity=0.458 Sum_probs=184.3
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~-------- 83 (291)
.++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 2 ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred CceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 357899999999998899999999999999999999999999999999999997 4799999999864
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|++|++.+++ .|++||+.+.....+.. .+...+++.++++.+++. . .++++.+||||||||++|||
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred HhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 24999999999886 69999998654333322 223345677889999983 2 47889999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..++.+++.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 161 ALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999864 6899999999999866 9999999999999998877654
No 161
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-50 Score=363.57 Aligned_cols=210 Identities=27% Similarity=0.384 Sum_probs=183.9
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC---CCC--CccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR---NTL--DAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl---~~p--~~G~I~~~g~~~--------- 83 (291)
.+|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|+++
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 478899999999999999999999999999999999999999999999997 454 589999999875
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+++ .|+.||+.+.....+.. .....+.+.++++.+++.. .++++.+||||||||++||||
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 24999999999887 59999998754333322 2334566788899999842 478899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 161 MAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999996 47999999999999965 99999999999999998887654
No 162
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-50 Score=363.97 Aligned_cols=210 Identities=27% Similarity=0.348 Sum_probs=184.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CC---CccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TL---DAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p---~~G~I~~~g~~~--------- 83 (291)
.+|++++++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+. .| ++|+|.++|+++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 4789999999999889999999999999999999999999999999999985 46 599999999865
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+++ +|++||+.+.....+.. .....+++.++++.+++. . .++++.+||||||||++||||
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 24999999999887 79999998754333322 223456677888998873 2 478899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++++|++|+++..++.+++.+
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 163 LATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999965 6899999999999865 99999999999999998877654
No 163
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-51 Score=371.82 Aligned_cols=212 Identities=26% Similarity=0.406 Sum_probs=189.8
Q ss_pred EEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-C----CccEEEECCEec-------
Q psy6612 20 VAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-L----DAGTIKLSFRQI------- 83 (291)
Q Consensus 20 l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-p----~~G~I~~~g~~~------- 83 (291)
|+++|++..|.. ..+++||||++++||++||+|+|||||||+.++|+|+++ | .+|+|.|+|+++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 678999999953 579999999999999999999999999999999999997 4 579999999865
Q ss_pred ------CeEEEEcCCC--CCCCCCCHHHHHHHhccccC-C-ChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhHHHH
Q psy6612 84 ------SDIGYMPQEL--ALHGELSIRETFRYYGYMFD-M-TDDQIETRSKEILKLLELPP----AKKIVGALSGGQQRR 149 (291)
Q Consensus 84 ------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQr 149 (291)
++|+|+||+| +|.|-+|+.+-+.-....+. . .+++.++++.++|+.+|++. .+.+|++|||||+||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 4699999997 67888999988865544432 3 45667889999999999974 389999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
|.||.||+.+|++||+||||++||...+.+++++|+++++ .|.|+|+||||+..+.. ||||+||..|++++.|+.+++
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999985 69999999999999976 999999999999999999888
Q ss_pred HHHH
Q psy6612 228 VESL 231 (291)
Q Consensus 228 ~~~~ 231 (291)
+.+.
T Consensus 242 ~~~P 245 (316)
T COG0444 242 FKNP 245 (316)
T ss_pred hcCC
Confidence 7653
No 164
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-50 Score=367.26 Aligned_cols=213 Identities=23% Similarity=0.355 Sum_probs=185.1
Q ss_pred ccccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-----
Q psy6612 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI----- 83 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~----- 83 (291)
|.-..+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 8 ~~~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 8 ISKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCCCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 344568999999999998999999999999999999999999999999999999987 6899999999864
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHH
Q psy6612 84 ------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 ------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~i 152 (291)
+.++|+||++.+++. |++||+.+.....+.. ....+++.++++.+++. . .++++.+||||||||++|
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred CHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 259999999998884 9999998764433332 22345667788888763 2 578899999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC-----------CEEEE
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD-----------DQYIG 220 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~-----------G~i~~ 220 (291)
||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++||+++++.. ||++++|++ |++++
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~ 244 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVE 244 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEE
Confidence 9999999999999999999999999999999999964 6899999999999976 999999996 67889
Q ss_pred EechhHHHH
Q psy6612 221 RLVHHDIVE 229 (291)
Q Consensus 221 ~~~~~~~~~ 229 (291)
.|+++++.+
T Consensus 245 ~~~~~~~~~ 253 (269)
T PRK14259 245 FNETKKIFN 253 (269)
T ss_pred eCCHHHHHh
Confidence 998877754
No 165
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-50 Score=362.77 Aligned_cols=208 Identities=29% Similarity=0.427 Sum_probs=183.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~---------- 83 (291)
+|+++|+++.|+++++++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 57899999999988999999999999999999999999999999999999763 699999999865
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++ +|++||+.+....++. +.....+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 24899999999887 8999999875433332 2334456778888888873 2 4788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999964 7899999999999866 9999999999999998877654
No 166
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-50 Score=362.23 Aligned_cols=210 Identities=27% Similarity=0.376 Sum_probs=183.9
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-----ccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~---------- 83 (291)
+|+++|++++|+++++++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 688999999999899999999999999999999999999999999999999874 89999999775
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++.+|+.||+.+.....+. ......+.+.++++.+++. . .++++++||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL 163 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 2499999999999999999999865332222 2233445666677777652 2 4788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999974 6999999999999976 99999999999999998877644
No 167
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1e-50 Score=360.81 Aligned_cols=206 Identities=22% Similarity=0.322 Sum_probs=178.9
Q ss_pred cccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+.+.+|+++|+++.|+++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..
T Consensus 3 ~~~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 3 ENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred CCCceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 445678999999999988999999999999999999999999999999999999999999999999865 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
++|+||++.+++. |++||+.+....+... ...+++.++++.+++. . .++++.+|||||+||++|||||+.+|+++
T Consensus 83 i~~~~q~~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (225)
T PRK10247 83 VSYCAQTPTLFGD-TVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL 159 (225)
T ss_pred cEEEecccccccc-cHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999998874 9999998753333221 1234677899999995 3 58999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEe-CCEEEEEec
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMR-DDQYIGRLV 223 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~-~G~i~~~~~ 223 (291)
||||||+|||+.++..+.++|+++++ .|.|||++||+++++..||++++|+ ++..+.+|.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999975 4899999999999997799999995 443444443
No 168
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.8e-50 Score=363.36 Aligned_cols=212 Identities=25% Similarity=0.415 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe-----c---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ-----I--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-----~--------- 83 (291)
++|+++|++++|++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 47889999999988889999999999999999999999999999999999999999999999865 3
Q ss_pred ----CeEEEEcCCCC--CCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 ----SDIGYMPQELA--LHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ----~~ig~v~q~~~--l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|++|++. +++.+|+.+|+.+...... .........+.++++.+++. . .++++.+|||||||||+|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 24899999974 4556789999865321111 11123346778899999995 3 68899999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~ 238 (253)
T TIGR02323 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999875 48999999999999975 99999999999999988776643
No 169
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-50 Score=361.49 Aligned_cols=209 Identities=32% Similarity=0.433 Sum_probs=184.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~---------- 83 (291)
||+++|+++.|+++++++++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 68899999999988999999999999999999999999999999999999874 899999999764
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++ +|++||+.+.....+. .....++.+.++++.+++.. .++++.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 25999999999887 7999999875433322 22334556778889888842 4788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999999975 6899999999999865 99999999999999998876654
No 170
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=3.2e-50 Score=356.14 Aligned_cols=199 Identities=31% Similarity=0.448 Sum_probs=179.3
Q ss_pred EEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------
Q psy6612 20 VAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------ 83 (291)
Q Consensus 20 l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------ 83 (291)
|+++++++.|++ +.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 678999999975 7899999999999999999999999999999999999999999999999875
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+.++|+||++.+++.+|+.||+.+....+. ....+..+++.++++.+++.. .++++.+||+|||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK 161 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 259999999999998999999987654332 334445567889999999965 688999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEE
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQY 218 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i 218 (291)
++||||||+|||+.++..+.+.|+++++ .++|||++||+++....||++++|++|++
T Consensus 162 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 162 LVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999975 58999999999986656999999999975
No 171
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-51 Score=348.08 Aligned_cols=207 Identities=30% Similarity=0.417 Sum_probs=193.9
Q ss_pred eEEEEeEEEEECCEe--eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCC
Q psy6612 19 SVAVTSAYKKIGNHV--VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQE 92 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~--~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~ 92 (291)
++.+++++.+|++++ +|+|+|++|.+||.++++||||||||||||+++|+.+|+.|+|.++|+++ ..-|.|||+
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 567889999999887 99999999999999999999999999999999999999999999999988 357999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.++|++|+.||+.|+.++.++++.+..+.+.+++..+|+.. .++++.+|||||||||.|||||+.+|++|+||||+++
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgA 162 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGA 162 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhh
Confidence 999999999999999999999999888899999999999976 5899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC--CEEEEEechh
Q psy6612 172 LDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD--DQYIGRLVHH 225 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~--G~i~~~~~~~ 225 (291)
||.-+++++.++|.++- +.|+.++++|||++++.. ++++++|+- |+|+...+++
T Consensus 163 lDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 163 LDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999875 569999999999999976 999999976 6888876654
No 172
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-50 Score=360.35 Aligned_cols=211 Identities=27% Similarity=0.419 Sum_probs=184.7
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-----ccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~-------- 83 (291)
..+|++++++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred CceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 45788999999999889999999999999999999999999999999999999987 69999999764
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|+||++.+++. |+.||+.+....++.. .+...+.+.++++.+++. . .++++.+||||||||++|||
T Consensus 82 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 160 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIAR 160 (251)
T ss_pred HhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 249999999998875 9999998754333322 223345667778888863 2 47889999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.+|++|||||||+|||+.++..+.++|+++. +++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 161 VLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999999985 57999999999999976 89999999999999998877644
No 173
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=6.7e-50 Score=361.65 Aligned_cols=208 Identities=19% Similarity=0.278 Sum_probs=182.7
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC----CccEEEECCEec-------CeEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL----DAGTIKLSFRQI-------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p----~~G~I~~~g~~~-------~~ig 87 (291)
+|+++|++++| ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++ +.++
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 57889999999 57899999999999999999999999999999999999999 999999999875 3599
Q ss_pred EEcCCCC--CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 88 YMPQELA--LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP----AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 88 ~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
|+||++. +.+.+|+.+|+.+.....+... ..+++.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 160 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP 160 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence 9999985 4456799998865433233222 2356788999999964 478899999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+|||+.++..+.+.|+++++ .|.|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999975 48999999999999965 99999999999999998877654
No 174
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-50 Score=406.00 Aligned_cols=216 Identities=19% Similarity=0.295 Sum_probs=191.4
Q ss_pred ccccceEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------
Q psy6612 14 IEVKHSVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------ 83 (291)
+..++||+++|+++.|+ ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..+
T Consensus 7 ~~~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 7 LDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CCCCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccc
Confidence 44566899999999996 35799999999999999999999999999999999999999999999988521
Q ss_pred -----------------CeEEEEcCCC--CCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC----CCCCc
Q psy6612 84 -----------------SDIGYMPQEL--ALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP----AKKIV 139 (291)
Q Consensus 84 -----------------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----~~~~~ 139 (291)
+.||||||++ .+++.+||.||+.+..... +.+..+.++++.++++.+|+.. .++++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence 2599999998 6888899999998865432 4455556678899999999953 57899
Q ss_pred CcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
.+|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++ |+|||+||||++++.. |||+++|++|+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 999999999999999999999999999999999999999999999999754 8999999999999976 99999999999
Q ss_pred EEEEechhHHHH
Q psy6612 218 YIGRLVHHDIVE 229 (291)
Q Consensus 218 i~~~~~~~~~~~ 229 (291)
++..|+++++..
T Consensus 247 i~~~g~~~~~~~ 258 (623)
T PRK10261 247 AVETGSVEQIFH 258 (623)
T ss_pred ecccCCHHHhhc
Confidence 999888877643
No 175
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-50 Score=404.19 Aligned_cols=212 Identities=20% Similarity=0.279 Sum_probs=190.1
Q ss_pred ceEEEEeEEEEEC-----------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---
Q psy6612 18 HSVAVTSAYKKIG-----------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~-----------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--- 83 (291)
.+|+++|+++.|+ ...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 5899999999996 25799999999999999999999999999999999999999999999999864
Q ss_pred ---------CeEEEEcCCC--CCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHH
Q psy6612 84 ---------SDIGYMPQEL--ALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRR 149 (291)
Q Consensus 84 ---------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQr 149 (291)
++|+|+||++ .+++.+|+.+|+.+....++. ...+.++++.++++.+|+. . .++++++||||||||
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR 471 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 2599999997 588999999999875433332 2344556788999999995 3 689999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
|+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++++.. ||++++|++|++++.|+++++
T Consensus 472 v~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i 551 (623)
T PRK10261 472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAV 551 (623)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999754 8999999999999976 999999999999999998887
Q ss_pred HH
Q psy6612 228 VE 229 (291)
Q Consensus 228 ~~ 229 (291)
..
T Consensus 552 ~~ 553 (623)
T PRK10261 552 FE 553 (623)
T ss_pred hc
Confidence 54
No 176
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-50 Score=359.91 Aligned_cols=209 Identities=27% Similarity=0.419 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~--------- 83 (291)
++|+++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 2 NKFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred CeEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 368899999999988999999999999999999999999999999999999986 599999999765
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++ .|+.||+.+.....+.. .....+++.++++.+++. . .++++.+|||||||||+|||||
T Consensus 82 ~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 82 RIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 24999999999887 79999998753333322 233445677788888873 2 4688999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++++|++|+++..++.+++.
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999975 5899999999999876 9999999999999988876653
No 177
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-50 Score=364.59 Aligned_cols=211 Identities=21% Similarity=0.358 Sum_probs=181.5
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEE
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYM 89 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v 89 (291)
..+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ ..++|+
T Consensus 4 ~~~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 4 QAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred hceEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 45789999999995 57899999999999999999999999999999999999999999999999875 259999
Q ss_pred cCCCCCC--CCCCHHHHHHHhcc----ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 90 PQELALH--GELSIRETFRYYGY----MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 90 ~q~~~l~--~~ltv~enl~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
||++.+. ...++.+|+.+... .........++++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 163 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV 163 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9998653 23478888754311 111122334456778899999975 6889999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|||||||+|||+.++..+.++|++++++|+|||++||+++++.. ||+++++ +|+++..++++++.
T Consensus 164 lllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 164 ILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 99999999999999999999999998778999999999999865 9999777 89999999887764
No 178
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.8e-51 Score=341.25 Aligned_cols=204 Identities=25% Similarity=0.382 Sum_probs=188.3
Q ss_pred ceEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 18 HSVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
+.|++++++|..+ ...+|++|+|.|++||-++|+||+|||||||+-+++|+..|++|+|.+.|+++
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 4677788888775 36799999999999999999999999999999999999999999999999886
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+++|||||.+.+.|+||..||+..+..+.+-+..+....+.++++.+|+.. .+.+|.+|||||||||+|||||+..
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 469999999999999999999999888877555666778889999999976 6889999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
|++|+.||||-+||..+-.++.+++-.+. +.|+|.++||||...+.+|+|++-|.+|+++++
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999999999999997 569999999999999999999999999998753
No 179
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-49 Score=359.07 Aligned_cols=211 Identities=28% Similarity=0.382 Sum_probs=182.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC--C---CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--L---DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~-------- 83 (291)
+.||+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 557899999999998899999999999999999999999999999999999975 4 599999999865
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|+||++.+++ .|+++|+.+.....+.. .+...+++.++++.+++. . .++++.+||||||||++|||
T Consensus 83 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 25999999999888 69999998754333322 222344566778888763 2 47889999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..+++.+...
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999975 5899999999999965 99999999999999888776543
No 180
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-49 Score=362.34 Aligned_cols=212 Identities=26% Similarity=0.341 Sum_probs=186.0
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~------- 83 (291)
-..+|+++|++++|+++++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 3457899999999998999999999999999999999999999999999999986 5899999999875
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++ .|++||+.+.....+. .......++.++++.+++. . .++++.+||||||||++||
T Consensus 97 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred HHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 24999999998887 5999999875433222 2334456677889999884 2 5788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+.++|+++. ++.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 176 RAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999996 47899999999999865 99999999999999998877643
No 181
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=5e-50 Score=358.90 Aligned_cols=195 Identities=30% Similarity=0.514 Sum_probs=173.9
Q ss_pred EEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc-CCCCCCC
Q psy6612 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP-QELALHG 97 (291)
Q Consensus 27 ~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~-q~~~l~~ 97 (291)
++|+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++ |++.+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 566778899999999999999999999999999999999999999999999999864 3599998 5577888
Q ss_pred CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHH
Q psy6612 98 ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176 (291)
Q Consensus 98 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~ 176 (291)
.+|+.||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 109 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 188 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188 (236)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 8999999987654444444455567788999999975 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 177 SQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 177 ~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
++.+.++|++++++ +.|||++||+++++.. ||++++|.+|+++..
T Consensus 189 ~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 189 QENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYD 235 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEec
Confidence 99999999999754 7899999999999866 999999999998764
No 182
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-49 Score=359.30 Aligned_cols=212 Identities=29% Similarity=0.414 Sum_probs=184.6
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC--C---CccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--L---DAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~------- 83 (291)
+..+|++++++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++
T Consensus 3 ~~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 3 MEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred ccceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 3557899999999999999999999999999999999999999999999999976 3 489999999774
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++. |++||+.+....++. .....++.+.++++.+++. . .++++.+||||||||++||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA 161 (253)
T ss_pred hhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHH
Confidence 248999999998885 999999876443332 2233445677788888873 1 4788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 162 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 162 RTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 999999999999999999999999999999999975 5899999999999965 99999999999999988877653
No 183
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-49 Score=365.99 Aligned_cols=212 Identities=27% Similarity=0.371 Sum_probs=185.1
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~------- 83 (291)
.+.+|++++++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 4557999999999988889999999999999999999999999999999999864 4999999999764
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++. |+.||+.+....++.. ....++++.++++.+++. . .++++.+||||||||++||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 259999999998875 9999998754333322 233445677888888873 2 4788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 195 raL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~ 270 (286)
T PRK14275 195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFT 270 (286)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999875 5899999999999966 99999999999999998877643
No 184
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-50 Score=392.75 Aligned_cols=206 Identities=22% Similarity=0.361 Sum_probs=186.1
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
++|+++|++++|+++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+|
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 378899999999988999999999999999999999999999999999999999999999999875 2599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhcc--ccC-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGY--MFD-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~--~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
|+||++.+++.+|+.||+.+... .++ ....+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999987532 112 233445567889999999975 68899999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
||||||+|||+.++..+.++|++++++|+|||++|||++++.. ||++++|++|+++..+.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999998778999999999999976 99999999999987654
No 185
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-49 Score=358.61 Aligned_cols=207 Identities=25% Similarity=0.442 Sum_probs=181.0
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-----------C
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI-----------S 84 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~-----------~ 84 (291)
+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++ +
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 86 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRA 86 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhh
Confidence 57999999998899999999999999999999999999999999999986 4799999999764 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCC--ChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAral~ 157 (291)
.++|+||++.+++. |++||+.+....++. .....++.+.++++.+++.. .++++.+||||||||++|||||+
T Consensus 87 ~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 87 KVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred hEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 48999999998886 999999875333222 22334456778899999852 46788999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.+|++|||||||+|||+.++..+.+.|++++ +++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999986 48999999999999976 99999999999999888766543
No 186
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-49 Score=362.77 Aligned_cols=211 Identities=25% Similarity=0.334 Sum_probs=186.0
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~-------- 83 (291)
+.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4478999999999999999999999999999999999999999999999999985 799999999764
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+|+ +|+++|+.+...... .+..+...++.++++.+++.. .++.+.+||||||||++||||
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra 177 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART 177 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 24999999999888 799999986532222 233444556678889999852 467899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+.+|++|||||||+|||+.+++.+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999975 4899999999999866 99999999999999999887754
No 187
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-49 Score=365.01 Aligned_cols=210 Identities=26% Similarity=0.422 Sum_probs=184.2
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~------- 83 (291)
-+++|++++++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 3567999999999998899999999999999999999999999999999999987 6899999999765
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-----CCCCCcCcCChhHHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-----PAKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|+||++.+++. |+.||+.+.....+.+. ...+++.++++.+++. ..++++.+||||||||++|||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAr 193 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIAR 193 (285)
T ss_pred HhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHH
Confidence 248999999988885 99999987543333332 3455788899999884 247889999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEE-EEeCCEEEEEechhHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIG-LMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~-~l~~G~i~~~~~~~~~~ 228 (291)
||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. |||++ +|++|+++..++++++.
T Consensus 194 aL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 194 AIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999975 4799999999999976 99975 67999999988877654
No 188
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-49 Score=359.54 Aligned_cols=211 Identities=25% Similarity=0.436 Sum_probs=185.8
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-----ccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~--------- 83 (291)
++|+++|++++|++..+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 4789999999998888999999999999999999999999999999999999985 89999999764
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+++ +|+.||+.+.....+. +..+..+++.++++.+++.. .++++.+||||||||++||||
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 24999999999888 8999999875333332 23334456778899998732 478899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeC-----CEEEEEechhHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRD-----DQYIGRLVHHDIV 228 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~-----G~i~~~~~~~~~~ 228 (291)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||+++++.. ||++++|++ |+++..++++++.
T Consensus 165 l~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 9999999999999999999999999999999874 58999999999999976 999999999 9999999988775
Q ss_pred H
Q psy6612 229 E 229 (291)
Q Consensus 229 ~ 229 (291)
+
T Consensus 245 ~ 245 (261)
T PRK14258 245 N 245 (261)
T ss_pred h
Confidence 4
No 189
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-50 Score=356.54 Aligned_cols=206 Identities=27% Similarity=0.442 Sum_probs=176.3
Q ss_pred EEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
|+++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++ +.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999765 899999999999999999999999999999999999999999999999875 34999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIET-----RSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+||++.+++ .|++||+.+..... ......+ .+.++++.+ ++.. .++++.+||+|||||++|||||+.+|
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999998887 69999998753321 1222111 234455555 5543 57789999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+++||||||+|||+.++..+.+.|++++ ++.|||++||+++++..||++++|++|+++..++++++..
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 158 PILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 9999999999999999999999999996 4899999999999997799999999999998888766543
No 190
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.6e-50 Score=359.23 Aligned_cols=206 Identities=25% Similarity=0.423 Sum_probs=175.0
Q ss_pred EEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 468999999963 6799999999999999999999999999999999999999999999999875 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIET-----RSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+||++.+++ .|+.||+.+... ......... .+.++++.+ ++.. .++++.+|||||||||+|||||+.+|
T Consensus 81 ~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 81 VLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999998875 699999976432 111211111 123344554 4433 46789999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
++|||||||+|||+.++..+.+.|++++ +|+|||++||+++++..||++++|++|+++..++++++..
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999997 4899999999999996699999999999999998776654
No 191
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.6e-50 Score=392.78 Aligned_cols=209 Identities=28% Similarity=0.419 Sum_probs=186.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEECCEec----------CeE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL--DAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~----------~~i 86 (291)
+|+++|++++|+++++|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++ ..+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 47899999999988999999999999999999999999999999999999987 799999999875 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhcccc--C--CChHHHHHHHHHHHHHcCCCC-C-CCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMF--D--MTDDQIETRSKEILKLLELPP-A-KKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~--~--~~~~~~~~~~~~~l~~~~l~~-~-~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
||+||++.+++.+|+.||+.+..... . ...+..++++.++++.+++.. . ++++++|||||||||+|||||+.+|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999998754321 1 223344567888999999965 3 5789999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
++|||||||+|||+.++..+.+.|++++++|.|||++|||++++.. ||++++|++|+++..+++++.
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999998778999999999999976 999999999999988876654
No 192
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-49 Score=361.65 Aligned_cols=211 Identities=27% Similarity=0.390 Sum_probs=185.4
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~------- 83 (291)
-..+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 22 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 22 EQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 3557999999999998899999999999999999999999999999999999987 4899999999864
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC-----CCCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP-----PAKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-----~~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+|+. |+.||+.+.....+. .....++++.++++.+++. ..++++.+||||||||++||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 180 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIA 180 (272)
T ss_pred HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHH
Confidence 259999999998886 999999875433332 2223345677888888884 24788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|||+.+|+++||||||+|||+.++..+++.|+++++ +.|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 181 ral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 181 RAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 999999999999999999999999999999999975 6899999999999865 9999999999999988877654
No 193
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.8e-49 Score=361.87 Aligned_cols=210 Identities=27% Similarity=0.398 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEC---------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------
Q psy6612 19 SVAVTSAYKKIG---------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83 (291)
Q Consensus 19 ~l~~~~l~~~~~---------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------ 83 (291)
+|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 688999999997 47899999999999999999999999999999999999999999999999864
Q ss_pred ------CeEEEEcCCC--CCCCCCCHHHHHHHhcc-ccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHH
Q psy6612 84 ------SDIGYMPQEL--ALHGELSIRETFRYYGY-MFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 ------~~ig~v~q~~--~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~i 152 (291)
+.++|+||++ .+++..|+.+|+.+... ..+........++.++++.+++. . .++++.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 2599999997 46677899999875432 12333344455788999999996 3 588999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 99999999999999999999999999999999999754 8999999999999976 9999999999999999887754
No 194
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-49 Score=359.25 Aligned_cols=210 Identities=26% Similarity=0.369 Sum_probs=184.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~--------- 83 (291)
.+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 368899999999988999999999999999999999999999999999999985 489999999865
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAra 155 (291)
..++|+||++.+|+ +|++||+.+.....+ .+.....+.+.++++.+++. . .++++.+||||||||++||||
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 24999999999887 899999987543322 23334455677888988873 2 578899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEe-----CCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMR-----DDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~-----~G~i~~~~~~~~~~~ 229 (291)
|+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++++.. ||++++|+ +|+++..++++++.+
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 243 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS 243 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhc
Confidence 9999999999999999999999999999999975 5899999999999976 99999998 599999999887643
No 195
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.9e-50 Score=349.61 Aligned_cols=192 Identities=26% Similarity=0.331 Sum_probs=172.9
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~ 90 (291)
|+++++++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 57899999999999999999999999999999999999999999999999999999999999875 3599999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+++.+|+.||+.+....++. ...+++.++++.+++.. .++++.+||||||||++|||||+++|+++||||||
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999999999999999876543321 22456788999999965 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhh-CeEEEE
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGA-HNIGLM 213 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~-d~i~~l 213 (291)
+|||+.++..++++|++++++|.|||++||+++++..| +|++.+
T Consensus 158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999987789999999999999775 566655
No 196
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-49 Score=362.79 Aligned_cols=211 Identities=24% Similarity=0.366 Sum_probs=182.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~-------- 83 (291)
..+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 347899999999998889999999999999999999999999999999999987 6999999999765
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCC----CC-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLEL----PP-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l----~~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|+||++.+++. |++||+.+.....+.. .....+.+.++++.+++ .. .++++.+||||||||++|||
T Consensus 102 ~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 249999999998874 9999998754333322 22234456677777754 22 47889999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 181 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 181 CLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999975 6899999999999865 99999999999999998776643
No 197
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=5.4e-50 Score=356.17 Aligned_cols=200 Identities=25% Similarity=0.380 Sum_probs=175.4
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGEL 99 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~l 99 (291)
+.+++++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++. +..+...+++.+
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS---LLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch---hhcccccCCCCC
Confidence 66788999999999999999999999999999999999999999999999999999999998642 222234566778
Q ss_pred CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHH
Q psy6612 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178 (291)
Q Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~ 178 (291)
|+.||+.+....++....+.++++.++++.+++.. .++++.+||||||||++|||||+++|+++||||||+|||+.+++
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~ 179 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 99999987654444344444567788899999976 68899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEe
Q psy6612 179 IIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222 (291)
Q Consensus 179 ~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~ 222 (291)
.+++.|++++++|+|||++||+++++.. ||++++|++|+++..|
T Consensus 180 ~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 180 KCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999998668999999999999965 9999999999987643
No 198
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.2e-49 Score=356.12 Aligned_cols=209 Identities=24% Similarity=0.301 Sum_probs=182.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEECCEecC----------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR--NTLDAGTIKLSFRQIS---------- 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~---------- 84 (291)
+.+|++++++++|+++.+|+++||++++||++||+||||||||||+++|+|+ ++|++|+|+++|.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4578999999999988999999999999999999999999999999999998 5799999999998751
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhcccc----C---CChHHHHHHHHHHHHHcCCC-C-CCCCcC-cCChhHHHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMF----D---MTDDQIETRSKEILKLLELP-P-AKKIVG-ALSGGQQRRISFAV 154 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~-~~~~~~-~LSgGqkQrv~iAr 154 (291)
.++|++|++.+++.+|+.+|+.+..... . ....+..+++.++++.+++. . .++++. .||||||||++|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 3789999999999999999987643211 1 11122345677889999996 3 577787 59999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEEeCCEEEEEechh
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i~~~~~~~ 225 (291)
||+.+|++|||||||+|||+.++..++++|++++++|.|||++||+++++.. ||++++|++|+++..++++
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 9999999999999999999999999999999998778999999999999964 8999999999999998876
No 199
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7.4e-50 Score=388.12 Aligned_cols=215 Identities=25% Similarity=0.409 Sum_probs=193.6
Q ss_pred ccceEEEEeEEEEECC-----------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-
Q psy6612 16 VKHSVAVTSAYKKIGN-----------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~-----------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~- 83 (291)
...+++++|++|.|.. ..+++||||++.+||++||+|+||||||||.|+|+|+++|++|+|.++|.+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4678999999999972 4789999999999999999999999999999999999999999999999762
Q ss_pred ----------CeEEEEcCCC--CCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHH
Q psy6612 84 ----------SDIGYMPQEL--ALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELPP--AKKIVGALSGGQQR 148 (291)
Q Consensus 84 ----------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQ 148 (291)
+++-++||+| +|.|.+||.+++......+.. ...+.++++.++++.++|.. .+++|++|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 3688999987 689999999999876654432 23455667999999999975 69999999999999
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 149 rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
|++|||||+.+|++|++|||||+||+..+.++.++|++++++ |.|.||||||+..++. ||||++|++|+|++.|+.+.
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~ 516 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEK 516 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHH
Confidence 999999999999999999999999999999999999999854 9999999999999987 99999999999999998877
Q ss_pred HHHH
Q psy6612 227 IVES 230 (291)
Q Consensus 227 ~~~~ 230 (291)
+++.
T Consensus 517 v~~~ 520 (539)
T COG1123 517 VFEN 520 (539)
T ss_pred HhcC
Confidence 7654
No 200
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-49 Score=391.31 Aligned_cols=206 Identities=27% Similarity=0.398 Sum_probs=185.3
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEEEcCC
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGYMPQE 92 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~v~q~ 92 (291)
+|++++|+++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||+
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 81 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQE 81 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecc
Confidence 6899999989999999999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhcc-ccC--CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 93 LALHGELSIRETFRYYGY-MFD--MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
+.+++.+|++||+.+... ..+ ....+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEP 161 (491)
T PRK10982 82 LNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEP 161 (491)
T ss_pred cccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999999999999986432 112 123344567888999999975 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|+|||+.++..++++|++++++|.|||++|||++++.. ||++++|++|+++..+++++..
T Consensus 162 t~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 162 TSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999998778999999999999976 9999999999999999877653
No 201
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.5e-49 Score=392.95 Aligned_cols=210 Identities=24% Similarity=0.412 Sum_probs=186.4
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEEC------------------
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLS------------------ 79 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~------------------ 79 (291)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 46899999999889999999999999999999999999999999999997 7999999996
Q ss_pred -----CEec-------------------CeEEEEcCC-CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC
Q psy6612 80 -----FRQI-------------------SDIGYMPQE-LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP 134 (291)
Q Consensus 80 -----g~~~-------------------~~ig~v~q~-~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 134 (291)
|.++ +.++|+||+ +.+++.+|++||+.+.....+.+..+.++++.++++.++++.
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 2111 248999998 678888999999987544444444555678889999999975
Q ss_pred -CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEE
Q psy6612 135 -AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIG 211 (291)
Q Consensus 135 -~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~ 211 (291)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++++ .|+|||+||||++.+.. ||+++
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~ 240 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 6889999999999999999999999999999999999999999999999999964 58999999999999976 99999
Q ss_pred EEeCCEEEEEechhHHHH
Q psy6612 212 LMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 212 ~l~~G~i~~~~~~~~~~~ 229 (291)
+|++|+++..|+++++..
T Consensus 241 ~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 241 WLENGEIKEEGTPDEVVA 258 (520)
T ss_pred EEeCCEEeeecCHHHHHH
Confidence 999999998888877654
No 202
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=7.4e-50 Score=356.51 Aligned_cols=191 Identities=30% Similarity=0.411 Sum_probs=169.9
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----eEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----DIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+|++|++.+++.+|+.||+.+...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999998763 36899999999999999999987532
Q ss_pred --ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 111 --MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 111 --~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
.......+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 160 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 122333444566888999999975 68899999999999999999999999999999999999999999999999999
Q ss_pred HhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 188 ALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 188 ~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
+++ |+|||++||+++++.. ||++++|++|+++..++..
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCce
Confidence 754 8999999999999866 9999999999998776543
No 203
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.6e-49 Score=353.07 Aligned_cols=204 Identities=31% Similarity=0.444 Sum_probs=177.3
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC---CCccEEEECCEec------Ce
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT---LDAGTIKLSFRQI------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~------~~ 85 (291)
.+.+++++++|.+ +++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++ +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 4568899999964 589999999999999999999999999999999999999 9999999999875 45
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccC---CChHHHHHHHHH-HHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFD---MTDDQIETRSKE-ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~-~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
++|+||++.+++.+|+.||+.+...... ........++.+ +++.+++.. .++.+.+|||||+||++|||||+.+|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999987543221 111222234455 788888865 57889999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCH-hHHhh-hCeEEEEeCCEEEEEe
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI-EEAKG-AHNIGLMRDDQYIGRL 222 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~-~~~~~-~d~i~~l~~G~i~~~~ 222 (291)
++|||||||+|||+.++..+.+.|++++++|.|+|++||++ +++.. ||++++|++|++++.|
T Consensus 163 ~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 163 KVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999986789999999998 57755 9999999999998653
No 204
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-49 Score=393.13 Aligned_cols=212 Identities=20% Similarity=0.306 Sum_probs=186.9
Q ss_pred ceEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec-----
Q psy6612 18 HSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI----- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~----- 83 (291)
+||++++++++|++ +++|+++||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 47899999999963 6899999999999999999999999999999999999986 799999999864
Q ss_pred --------CeEEEEcCCCC--CCCCCCHHHHHHHhccc-cCCChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhHHH
Q psy6612 84 --------SDIGYMPQELA--LHGELSIRETFRYYGYM-FDMTDDQIETRSKEILKLLELPP----AKKIVGALSGGQQR 148 (291)
Q Consensus 84 --------~~ig~v~q~~~--l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQ 148 (291)
+.+||+||++. +++.+|+.+|+.+.... .+.+..+..+++.++++.+++.. .++++.+|||||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 25999999975 66778999998754322 23444555678889999999964 37899999999999
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 149 rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
||+|||||+++|++|||||||++||+.++..++++|++++++ |+|||+||||++++.. |||+++|++|+++..+++++
T Consensus 164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 243 (529)
T PRK15134 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAAT 243 (529)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999754 8999999999999976 99999999999999998877
Q ss_pred HHH
Q psy6612 227 IVE 229 (291)
Q Consensus 227 ~~~ 229 (291)
+..
T Consensus 244 ~~~ 246 (529)
T PRK15134 244 LFS 246 (529)
T ss_pred Hhh
Confidence 643
No 205
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2e-49 Score=351.62 Aligned_cols=195 Identities=27% Similarity=0.348 Sum_probs=172.1
Q ss_pred eEEEEeEEEEECC-------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEC--CE--ec----
Q psy6612 19 SVAVTSAYKKIGN-------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS--FR--QI---- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~-------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~--g~--~~---- 83 (291)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5789999999962 579999999999999999999999999999999999999999999998 42 32
Q ss_pred ---------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHH
Q psy6612 84 ---------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 ---------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~i 152 (291)
+.++|+||++.+++.+|+.||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 259999999999999999999987433333333444567788999999964 478999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEE
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLM 213 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l 213 (291)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||+++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999998778999999999999965 9999876
No 206
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-50 Score=345.12 Aligned_cols=222 Identities=23% Similarity=0.357 Sum_probs=198.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
||+++|++++..++.+|+++||++.+||+.+|+||||||||||||.|+|.+.|++|++.++|.++ +.-+.+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 67899999999999999999999999999999999999999999999999999999999999886 357899
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChH--HHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc------CC
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDD--QIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH------NP 160 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~------~p 160 (291)
||+..+-..+||+|.+.++..-++...+ +..+.++++|...++.. ..+...+|||||||||.+||.|++ ++
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 9999886678999999987554433222 55566888999999976 678889999999999999999987 44
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
++|+||||||+||+.++..++++.++++.+|..|+.|-||++.+.. |||+++|++|++++.|+++++... +.++..|
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~--Etl~~vy 238 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD--ETLERVY 238 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH--HHHHHHh
Confidence 5899999999999999999999999999889999999999999965 999999999999999999998776 6788888
Q ss_pred hcC
Q psy6612 240 RHG 242 (291)
Q Consensus 240 ~~~ 242 (291)
+..
T Consensus 239 g~~ 241 (259)
T COG4559 239 GAD 241 (259)
T ss_pred CCc
Confidence 654
No 207
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-49 Score=358.01 Aligned_cols=213 Identities=27% Similarity=0.423 Sum_probs=186.6
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC------Eec-------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF------RQI------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g------~~~------- 83 (291)
.++|.+++++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4578899999999999999999999999999999999999999999999999999997776665 332
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAra 155 (291)
..++|+||++.+++.+|+.||+.+.....+. ...+.++++.++++.+++. . .++++..||+|||||++||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 3599999999999999999999876432222 2334456788899999985 2 468899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|+.+|+++||||||+|||+.++..+.+.|.++++ +.|||++||+++++.. ||++++|++|+++..++.+++...
T Consensus 168 l~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 168 LALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999964 6899999999999965 999999999999999988776543
No 208
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.7e-49 Score=357.70 Aligned_cols=202 Identities=26% Similarity=0.403 Sum_probs=178.4
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCC
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHG 97 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~ 97 (291)
.+|+++++++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|+||++.+++
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~--~~i~~v~q~~~~~~ 80 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--LRIGYVPQKLYLDT 80 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc--cCEEEecccccccc
Confidence 4788999999999889999999999999999999999999999999999999999999999884 46999999988876
Q ss_pred CC--CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCH
Q psy6612 98 EL--SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174 (291)
Q Consensus 98 ~l--tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~ 174 (291)
.+ |+.+++.+.. +.. .+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+
T Consensus 81 ~l~~~~~~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 153 (251)
T PRK09544 81 TLPLTVNRFLRLRP---GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153 (251)
T ss_pred ccChhHHHHHhccc---ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 53 7777765321 111 245678899999976 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 175 ILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 175 ~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.++..+++.|++++++ |.|||++||+++++.. ||++++|++ +++..++++++.+
T Consensus 154 ~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 154 NGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 9999999999999765 8999999999999965 999999965 7888888877654
No 209
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.2e-49 Score=349.69 Aligned_cols=196 Identities=21% Similarity=0.285 Sum_probs=176.4
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC------eEEEEc
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS------DIGYMP 90 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~------~ig~v~ 90 (291)
+.+|+++|++++|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++|++
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 9 PPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred cceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 45788999999999889999999999999999999999999999999999999999999999998752 499999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+++.+|++||+.+....++. ...+.+.++++.+++.. .++++.+||+|||||++||||++.+|++|||||||
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999989999999875433322 12345678899999965 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
++||+.+++.+.+.|++++++|.|||++|||++++.. ||++++++.
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 166 ANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999998778999999999999966 999999863
No 210
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.4e-49 Score=391.40 Aligned_cols=212 Identities=25% Similarity=0.377 Sum_probs=185.6
Q ss_pred cceEEEEeEEEEEC-----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEC-CEe---c----
Q psy6612 17 KHSVAVTSAYKKIG-----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS-FRQ---I---- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~-g~~---~---- 83 (291)
..||+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+ +
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 45899999999994 2579999999999999999999999999999999999999999999995 521 1
Q ss_pred --------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------CCCCcCcCChhHHHH
Q psy6612 84 --------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------AKKIVGALSGGQQRR 149 (291)
Q Consensus 84 --------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~LSgGqkQr 149 (291)
+.+||+||++.+++.+|++||+.+.... ..+....++++.++++.+++.. .++++.+||||||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 3499999999999999999999864322 2233334567888999999963 478999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
|+|||||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++|||++++.. ||++++|++|+++..++++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999754 8999999999999976 999999999999998887765
Q ss_pred HH
Q psy6612 228 VE 229 (291)
Q Consensus 228 ~~ 229 (291)
.+
T Consensus 516 ~~ 517 (520)
T TIGR03269 516 VE 517 (520)
T ss_pred Hh
Confidence 44
No 211
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-49 Score=358.69 Aligned_cols=209 Identities=25% Similarity=0.389 Sum_probs=181.8
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~--------- 83 (291)
.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 36889999999998899999999999999999999999999999999999986 4899999999765
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|++|++.+++. |+.||+.+.....+.. ....+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 89 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred HhhhEEEEccCCccccc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 249999999988874 9999998754332222 22344566777877773 2 4788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEe---------CCEEEEEechhH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMR---------DDQYIGRLVHHD 226 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~---------~G~i~~~~~~~~ 226 (291)
+.+|++|||||||+|||+.++..++++|.++++ +.|||++||+++++.. ||++++|+ +|++++.+++++
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~ 245 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEK 245 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence 999999999999999999999999999999975 5899999999999966 99999998 799999999887
Q ss_pred HHH
Q psy6612 227 IVE 229 (291)
Q Consensus 227 ~~~ 229 (291)
+.+
T Consensus 246 ~~~ 248 (264)
T PRK14243 246 IFN 248 (264)
T ss_pred HHh
Confidence 754
No 212
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-49 Score=383.58 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=193.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
..+++++++|+|++.+||++|||++.+||++||+|.||||||||+|+|+|.++|++|+|+++|+.. ..|+
T Consensus 7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~ 86 (500)
T COG1129 7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIA 86 (500)
T ss_pred ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcE
Confidence 467899999999999999999999999999999999999999999999999999999999999976 3499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhcccc----CCChHHHHHHHHHHHHHcCCC-CCCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMF----DMTDDQIETRSKEILKLLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
.|+|+.+++|+|||.||+.++.... -+..+...+++.++|+.+++. ..+.++++||.||||.|+|||||..++++
T Consensus 87 ~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arl 166 (500)
T COG1129 87 TVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARV 166 (500)
T ss_pred EEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999997654322 245677888999999999984 37899999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEech-hHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVH-HDI 227 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~-~~~ 227 (291)
||||||||+|+....+.+++++++++++|.+||++||.++++.. ||||.+|+||+.++..+. .++
T Consensus 167 lIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 167 LILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233 (500)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC
Confidence 99999999999999999999999999999999999999999976 999999999999988873 443
No 213
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-49 Score=358.99 Aligned_cols=208 Identities=27% Similarity=0.402 Sum_probs=181.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~---------- 83 (291)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++
T Consensus 20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~ 99 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKL 99 (274)
T ss_pred eEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHH
Confidence 78999999999988999999999999999999999999999999999999863 699999999764
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+.++|+||++.+++. |+.||+.+.....+.. ....+.+.++++.+++. . .++++.+|||||||||+|||||+
T Consensus 100 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 100 RRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred hhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 259999999998875 9999998753322221 12234566778888763 2 47889999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEe---------CCEEEEEechhHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMR---------DDQYIGRLVHHDI 227 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~---------~G~i~~~~~~~~~ 227 (291)
.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++.. ||++++|+ +|+++..++++++
T Consensus 178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQM 256 (274)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 99999999999999999999999999999975 6899999999999966 99999998 8999999998877
Q ss_pred HH
Q psy6612 228 VE 229 (291)
Q Consensus 228 ~~ 229 (291)
..
T Consensus 257 ~~ 258 (274)
T PRK14265 257 FG 258 (274)
T ss_pred Hh
Confidence 54
No 214
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.8e-49 Score=350.77 Aligned_cols=194 Identities=26% Similarity=0.397 Sum_probs=168.7
Q ss_pred EEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
|++++++++|++ +.+++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|+++|.++ +.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 678999999975 5799999999999999999999999999999999999999999999999875 25999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCC-----------CcCcCChhHHHHHHHHHHH
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKK-----------IVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~-----------~~~~LSgGqkQrv~iAral 156 (291)
++|++.+++ .|+.||+.+.... .. .+.+.++++.+++.. .++ .+.+||||||||++|||||
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPL--AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCC--CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 999998887 6999999764221 11 234556777777743 333 3469999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
+.+|++|||||||+|||+.++..+++.|++++++ +|||++||+++++..||++++|++|+++..
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999754 899999999998866999999999998754
No 215
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.1e-49 Score=383.81 Aligned_cols=215 Identities=25% Similarity=0.367 Sum_probs=193.0
Q ss_pred cceEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC----ccEEEECCEec-----
Q psy6612 17 KHSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD----AGTIKLSFRQI----- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~----~G~I~~~g~~~----- 83 (291)
.++|+++|+++.|.. ..+++||||++++||++||+|+|||||||+.++|+|++++. +|+|.++|+++
T Consensus 3 ~~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred CceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 348899999999953 36999999999999999999999999999999999999887 89999999876
Q ss_pred --------CeEEEEcCCC--CCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCCC-C--CCCcCcCChhHHHH
Q psy6612 84 --------SDIGYMPQEL--ALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPP-A--KKIVGALSGGQQRR 149 (291)
Q Consensus 84 --------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-~--~~~~~~LSgGqkQr 149 (291)
++|+|+||+| .|.|-+|+.+-+.-....++ .+.++.++++.++|+.+++++ . +++|++||||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 4699999997 46666899888875544443 447788889999999999975 3 35999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
|.||+||+.+|++||+||||++||+..+.+++++|++++ +.|+++|+||||++.+.. |||+++|.+|++++.|+.+++
T Consensus 163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i 242 (539)
T COG1123 163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEI 242 (539)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999998 569999999999999977 999999999999999999998
Q ss_pred HHHH
Q psy6612 228 VESL 231 (291)
Q Consensus 228 ~~~~ 231 (291)
+++.
T Consensus 243 ~~~p 246 (539)
T COG1123 243 LSNP 246 (539)
T ss_pred Hhcc
Confidence 7754
No 216
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-51 Score=347.20 Aligned_cols=222 Identities=25% Similarity=0.417 Sum_probs=203.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
|++++|++|+|+++.+++++|++|++|.+++++|||||||||||.++++|+++++|+|+++|.++ ++++.+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999987 358899
Q ss_pred cCCCCCCCCCCHHHHHHHhcccc--CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 90 PQELALHGELSIRETFRYYGYMF--DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
-|+..+...+||+|-+.|+..-| +...++.+..+.++++.++|+. .+++..+||||||||..||..++++.++++||
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD 160 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec
Confidence 99999989999999998864333 4455677889999999999987 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHHhcC
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHG 242 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 242 (291)
||.++||..+..++++.|++++++ |+||++|-||++++.. +|+|+.|++|+++.+|+++++... +.+++.|...
T Consensus 161 EPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~--~~L~eiydm~ 236 (252)
T COG4604 161 EPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP--EILSEIYDMD 236 (252)
T ss_pred CcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH--HHHHHHhcCC
Confidence 999999999999999999999854 9999999999999976 999999999999999999998875 5677777554
No 217
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-49 Score=350.52 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=173.2
Q ss_pred eEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 19 SVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
.|+++|++++|++ +.+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 3678999999975 5799999999999999999999999999999999999999999999999775 34999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIET-----RSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+||++.+++. |++||+.+..... ......+ .+.++++.+ ++.. .++++.+|||||||||+|||||+.+|
T Consensus 82 ~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 82 VLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred ecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999988876 9999998653211 1111111 122233333 3433 45678999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
++|||||||+|||+.+++.+++.|++++ +++|||++||+++++..||++++|++|+++..++.+++.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999999999986 589999999999998779999999999999887765543
No 218
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.9e-49 Score=351.57 Aligned_cols=196 Identities=27% Similarity=0.349 Sum_probs=172.8
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC----CccEEEECCEec-------CeEEEEcCCCC--CCCCCC
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL----DAGTIKLSFRQI-------SDIGYMPQELA--LHGELS 100 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p----~~G~I~~~g~~~-------~~ig~v~q~~~--l~~~lt 100 (291)
+++|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|+++|+++ +.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 899999999875 36999999985 556789
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHcCCC---C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHH
Q psy6612 101 IRETFRYYGYMFDMTDDQIETRSKEILKLLELP---P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176 (291)
Q Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~ 176 (291)
+.+|+.+.....+.......+++.++++.++++ . .++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 999987643333322334456788999999996 3 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 177 SQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 177 ~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999764 8999999999999975 99999999999999998877643
No 219
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.1e-49 Score=391.43 Aligned_cols=212 Identities=21% Similarity=0.320 Sum_probs=186.6
Q ss_pred cceEEEEeEEEEEC-----------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--
Q psy6612 17 KHSVAVTSAYKKIG-----------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-----------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-- 83 (291)
+.+|+++|+++.|+ ++++|+++||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 34789999999995 3679999999999999999999999999999999999984 899999999764
Q ss_pred ----------CeEEEEcCCC--CCCCCCCHHHHHHHhccccC--CChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHH
Q psy6612 84 ----------SDIGYMPQEL--ALHGELSIRETFRYYGYMFD--MTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQ 147 (291)
Q Consensus 84 ----------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqk 147 (291)
+.+||+||++ .+++.+|+.||+.+....+. .+..+.++++.++++.+++. . .++++.+||||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 2489999997 48888999999987533221 23344456788999999996 3 6899999999999
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 148 Qrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
|||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||++|||++++.. ||++++|++|++++.++++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 511 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE 511 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999864 8999999999999976 9999999999999999887
Q ss_pred HHHH
Q psy6612 226 DIVE 229 (291)
Q Consensus 226 ~~~~ 229 (291)
++.+
T Consensus 512 ~~~~ 515 (529)
T PRK15134 512 RVFA 515 (529)
T ss_pred HHhc
Confidence 7643
No 220
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.9e-49 Score=353.51 Aligned_cols=206 Identities=30% Similarity=0.471 Sum_probs=173.5
Q ss_pred EEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 20 VAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 20 l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999964 4699999999999999999999999999999999999999999999999775 3499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH-----HHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETR-----SKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
|+||++.+++ .|++||+.+..... ..+..... +.++++.+ ++.. .++++.+|||||||||+|||||+.+
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 9999998886 59999998643221 11211111 12223333 3433 4677899999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++|||||||+|||+.++..+++.|++++ +|+|||++||+++++..||++++|++|+++..++.+++..
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999997 7899999999999997799999999999999888766543
No 221
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.3e-48 Score=351.09 Aligned_cols=208 Identities=22% Similarity=0.328 Sum_probs=178.1
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEECCEec----------CeE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~----------~~i 86 (291)
||+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++ ..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 578999999999889999999999999999999999999999999999995 69999999999764 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhcc-c--c-C---CChHHHHHHHHHHHHHcCCC-C-CCCCcC-cCChhHHHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGY-M--F-D---MTDDQIETRSKEILKLLELP-P-AKKIVG-ALSGGQQRRISFAVSL 156 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~-~--~-~---~~~~~~~~~~~~~l~~~~l~-~-~~~~~~-~LSgGqkQrv~iAral 156 (291)
+|++|++.+++.+|..+++.+... . . . .......+.+.++++.+++. . .++++. +||||||||++|||||
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 999999998888787766543211 0 1 0 11122345677889999995 3 466665 7999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEEeCCEEEEEechhH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i~~~~~~~~ 226 (291)
+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++|||++++.. ||++++|++|+++..++++.
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTL 232 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999998778999999999999965 79999999999999888763
No 222
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-48 Score=350.88 Aligned_cols=208 Identities=29% Similarity=0.440 Sum_probs=183.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~---------- 83 (291)
+|+++++++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 5789999999998899999999999999999999999999999999999864 4899999999875
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+|+. |+.||+.+....++. ..+..++++.++++.+++. . .++++.+||+|||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 249999999998885 999999865332222 2234556788889998873 2 4788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999964 7899999999999976 9999999999999999887764
No 223
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-48 Score=353.58 Aligned_cols=210 Identities=25% Similarity=0.357 Sum_probs=183.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~-------- 83 (291)
...+.++.++++|+++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3456788999999999999999999999999999999999999999999999986 799999999865
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.++ .+|+.||+.+........ .+..+++.++++.+++.. .++++.+|||||+||++||||
T Consensus 86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lara 163 (261)
T PRK14263 86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARA 163 (261)
T ss_pred hhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 2489999999888 489999998764433222 234467888999999842 357789999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEe--------CCEEEEEechhH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMR--------DDQYIGRLVHHD 226 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~--------~G~i~~~~~~~~ 226 (291)
|+.+|++|||||||+|||+.++..+++.|++++ ++.|||++||+++++.. ||++++|+ +|+++..++.++
T Consensus 164 l~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~ 242 (261)
T PRK14263 164 IATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQ 242 (261)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHH
Confidence 999999999999999999999999999999996 47899999999999865 99999996 899999999887
Q ss_pred HHH
Q psy6612 227 IVE 229 (291)
Q Consensus 227 ~~~ 229 (291)
+.+
T Consensus 243 ~~~ 245 (261)
T PRK14263 243 IFQ 245 (261)
T ss_pred HHh
Confidence 654
No 224
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=5.6e-49 Score=343.98 Aligned_cols=188 Identities=25% Similarity=0.338 Sum_probs=170.3
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEcC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMPQ 91 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~q 91 (291)
|+++++++.|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 4689999999999999999999999999999999999999999999999999999999999875 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|++||+.+..... ..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 154 (201)
T cd03231 81 APGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTT 154 (201)
T ss_pred ccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 999998899999998753211 2356778899999975 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEE
Q psy6612 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLM 213 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l 213 (291)
|||+.++..+.+.|++++++|.|+|++||+...... |++++.+
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 155 ALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999988778999999999888755 8998876
No 225
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=7.4e-49 Score=353.93 Aligned_cols=203 Identities=21% Similarity=0.341 Sum_probs=177.7
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcC
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQ 91 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q 91 (291)
+++|+++. .+|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|+++ +.++|+||
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q 76 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQ 76 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecc
Confidence 45677764 389999999999999999999999999999999999864 99999999875 24899999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc-------CCCEE
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH-------NPKLL 163 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~-------~p~ll 163 (291)
++.+++.+|+++|+.+.... .....+..+++.++++.+++.. .++++.+||||||||++|||||+. +|++|
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~ll 155 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLL 155 (248)
T ss_pred cCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEE
Confidence 99888889999999875322 2223344567888999999965 688999999999999999999998 67999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.++..+.++|++++++|.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 156 llDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 156 LLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 9999999999999999999999998778999999999999866 99999999999999988776643
No 226
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.1e-49 Score=343.82 Aligned_cols=189 Identities=24% Similarity=0.345 Sum_probs=170.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~ 90 (291)
||+++|++++|+++++|+++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|+++ +.++|++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 57899999999988999999999999999999999999999999999999999999999999865 3599999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+++.+|+.||+.+..... .. ...+.++++.+++.. .++++.+||+||+||++||||++.+|++|||||||
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~ 155 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999988899999998753211 11 246778999999865 57889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEE
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGL 212 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~ 212 (291)
+|||+.++..+.+.|++++++|.|||++||+.+.+..||.-++
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 156 VALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999997778999999999999988887554
No 227
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-49 Score=389.07 Aligned_cols=211 Identities=22% Similarity=0.389 Sum_probs=185.9
Q ss_pred cceEEEEeEEEEEC---CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEECCEec---------
Q psy6612 17 KHSVAVTSAYKKIG---NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-LDAGTIKLSFRQI--------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~---~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~~--------- 83 (291)
..+|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 34799999999993 4679999999999999999999999999999999999998 5999999999865
Q ss_pred -CeEEEEcCCC---CCCCCCCHHHHHHHhcc--ccC---CChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHH
Q psy6612 84 -SDIGYMPQEL---ALHGELSIRETFRYYGY--MFD---MTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 -~~ig~v~q~~---~l~~~ltv~enl~~~~~--~~~---~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~i 152 (291)
..++|+||++ .+++++|+.||+.+... ... .+....++++.++++.+++. . .++++++|||||||||+|
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 2499999996 47888999999976421 111 12333456788999999995 4 689999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
||||+.+|++|||||||+|||+.+++.++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999999998779999999999999976 999999999999999887765
No 228
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-48 Score=343.56 Aligned_cols=192 Identities=29% Similarity=0.386 Sum_probs=172.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEEcCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYMPQE 92 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v~q~ 92 (291)
||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++ +.++|++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 68899999999988999999999999999999999999999999999999999999999999874 258999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|+.||+.+....++.. .+.+.++++.+++.. .++++++||||||||++|||||+.+|++|||||||+|
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 88888899999998754333221 235778999999965 5789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 172 LDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
||+.++..+++.|++++++|.|||++||+++++.. |+++-+..
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999988779999999999999977 88887743
No 229
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-48 Score=348.61 Aligned_cols=206 Identities=26% Similarity=0.428 Sum_probs=173.6
Q ss_pred EEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 20 VAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
+++++++++|+ ++.+++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++ +.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 46899999995 57799999999999999999999999999999999999999999999999875 249999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIET-----RSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
||++.+++ .|+.||+.+.... ........ .+.+.++.+ ++.. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 81 PQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred CCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99998886 6999999875321 12222111 122233333 3332 456788999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+|||+.++..+.+.|.++++ |+|||++||+++++..||++++|++|+++..++.+++..
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999976 899999999999997799999999999998888766543
No 230
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.8e-48 Score=370.60 Aligned_cols=207 Identities=29% Similarity=0.423 Sum_probs=193.2
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~i 86 (291)
.+.+++++++|.|++..|+++|||+|++|||+||+|+||||||||+++|.|+++|++|+|.++|+++ ..|
T Consensus 2 ~~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 2 EPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred CceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 3567899999999999999999999999999999999999999999999999999999999999986 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccc---cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYM---FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
|+|+|++.|++.+||.||+.++..- .....++.++++.++.+.+|++- .++++++||-||||||.|.+||.++|++
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~i 161 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARL 161 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCE
Confidence 9999999999999999999886532 23456778889999999999975 7899999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
|||||||+-|-|...+++++.+++++++|+|||++||-++++.. |||+.+|.+|++++...
T Consensus 162 LILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 162 LILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999977 99999999999988776
No 231
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-49 Score=329.91 Aligned_cols=211 Identities=31% Similarity=0.466 Sum_probs=196.5
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------------- 83 (291)
.|+++++++.||...+|.||+|+.++||.+.++||+|||||||+|.++-+..|.+|+..+.|...
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999977543
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHH-hccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 SDIGYMPQELALHGELSIRETFRY-YGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+++|+|||+..++|.+||.||+.- +.+..++++++.+.++.++++.+.+.+ +|+.|-.|||||+|||+|||||+++|+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 469999999999999999999853 456678889999999999999999976 799999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|++||||++|||+-..++.++|+++.+.|.|-+++||..+.++. |.++++|++|+|++.|+.+.+.+
T Consensus 162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~ 230 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230 (242)
T ss_pred EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccC
Confidence 999999999999999999999999999889999999999999977 99999999999999999876543
No 232
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.1e-48 Score=426.25 Aligned_cols=214 Identities=26% Similarity=0.488 Sum_probs=198.2
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeE
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~i 86 (291)
+.+|+++|++|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++ +.|
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 458999999999985 6899999999999999999999999999999999999999999999999876 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
||+||++.+++.+|++||+.+.+..++.+.++.+++++++++.+++.. .++++++||||||||++||+||+.+|++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLL 2094 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLL 2094 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999998777777666666677889999999975 7899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+||||.+++.+++.|++++++|+|||++||++++++. |||+++|++|+++..|+++++.+.
T Consensus 2095 DEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2095 DEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999998779999999999999977 999999999999999998876543
No 233
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-48 Score=351.62 Aligned_cols=210 Identities=29% Similarity=0.394 Sum_probs=182.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~-------- 83 (291)
..+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 5578999999999988999999999999999999999999999999999999875 799999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCCh-HHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHH
Q psy6612 84 -----SDIGYMPQELALHGELSIRETFRYYGYMFDMTD-DQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 -----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~i 152 (291)
+.++|+||++.+++. |++||+.+.....+... ...++++.++++.+++. . .++++.+||||||||++|
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 172 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI 172 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence 248999999999986 99999986543333222 22345677788888763 2 468899999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..++.+++.
T Consensus 173 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 173 ARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999975 6899999999999965 9999999999999999887664
No 234
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-48 Score=362.56 Aligned_cols=214 Identities=28% Similarity=0.346 Sum_probs=186.1
Q ss_pred ccccceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec---
Q psy6612 14 IEVKHSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI--- 83 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~--- 83 (291)
+....+|+++|++++|. .+++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++
T Consensus 75 ~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 45566899999999994 4679999999999999999999999999999999999986 5799999999986
Q ss_pred --------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHH-HHHHHHHHHHHcCCC-----CCCCCcCcCChhHHHH
Q psy6612 84 --------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ-IETRSKEILKLLELP-----PAKKIVGALSGGQQRR 149 (291)
Q Consensus 84 --------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~-~~~~~~~~l~~~~l~-----~~~~~~~~LSgGqkQr 149 (291)
+.++|+||++.+|+ .|++||+.|.....+...++ ..+.+.++++.+++. ..++++.+||||||||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred ccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence 25999999999886 69999998754332333222 233467788888873 1468899999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
++|||||+.+|++|||||||+|||+.+...+.+.|+++.+ ++|||++||+++++.. ||+|++|++|++++.|+++++.
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999999875 6999999999999977 9999999999999999998876
Q ss_pred H
Q psy6612 229 E 229 (291)
Q Consensus 229 ~ 229 (291)
.
T Consensus 313 ~ 313 (329)
T PRK14257 313 I 313 (329)
T ss_pred c
Confidence 4
No 235
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=7.3e-49 Score=385.33 Aligned_cols=203 Identities=20% Similarity=0.288 Sum_probs=180.5
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.+||+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 68999999999988899999999999999999999999999999999999999999999988654 238999
Q ss_pred cCCCCC--C-C-----CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 90 PQELAL--H-G-----ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 90 ~q~~~l--~-~-----~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
||++.+ + + .+|+.+|+.+. ...++++.++++.++++. .++++++|||||||||+|||||+.+|
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEP 154 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 998653 1 1 46888876431 123456788999999965 68999999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
++|||||||+|||+.++..+.++|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 155 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 155 DLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999998778999999999999976 99999999999999988776543
No 236
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=349.38 Aligned_cols=196 Identities=21% Similarity=0.349 Sum_probs=174.7
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++++|++.+++.+|+.+|+.+....
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~----~~~~~~~~~~~~~~tv~enl~~~~~~ 112 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE----VSVIAISAGLSGQLTGIENIEFKMLC 112 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE----EeEEecccCCCCCCcHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999985 57888888888889999999765333
Q ss_pred cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 112 FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
.+...++..+.+.++++.+++.. .++++.+||+||+||++|||||+.+|++|||||||+|||+.++..+++.|.+++++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~ 192 (264)
T PRK13546 113 MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ 192 (264)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC
Confidence 34444555556777888889865 68899999999999999999999999999999999999999999999999999877
Q ss_pred CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 191 GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 191 g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
|+|||++||+++++.. ||++++|++|+++..++.+++....
T Consensus 193 g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 234 (264)
T PRK13546 193 NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY 234 (264)
T ss_pred CCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHh
Confidence 8999999999999976 9999999999999999988776654
No 237
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-48 Score=385.55 Aligned_cols=206 Identities=21% Similarity=0.390 Sum_probs=181.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~i 86 (291)
+.+|+++|+++.|+ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.+
T Consensus 263 ~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 263 ETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred CcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 34799999998764 389999999999999999999999999999999999999999999999764 259
Q ss_pred EEEcCC---CCCCCCCCHHHHHHHhcccc--------CC-ChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHH
Q psy6612 87 GYMPQE---LALHGELSIRETFRYYGYMF--------DM-TDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 87 g~v~q~---~~l~~~ltv~enl~~~~~~~--------~~-~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~i 152 (291)
||+||+ +.+++++|++||+.+....+ +. .....++++.++++.+++. . .++++++|||||||||+|
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence 999998 46888999999997642210 11 1223345678899999996 4 689999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEech
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~ 224 (291)
||||+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++.. ||++++|++|+++..++.
T Consensus 421 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 999999999999999999999999999999999998779999999999999976 999999999999987765
No 238
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-48 Score=332.47 Aligned_cols=164 Identities=41% Similarity=0.776 Sum_probs=154.6
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEcC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMPQ 91 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~q 91 (291)
+++++++++|++.++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 4689999999888899999999999999999999999999999999999999999999999875 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
++.+++.+|+.||+. ||||||||++|||||+.+|++|||||||++
T Consensus 81 ~~~~~~~~tv~~~~~-----------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~ 125 (173)
T cd03230 81 EPSLYENLTVRENLK-----------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSG 125 (173)
T ss_pred CCccccCCcHHHHhh-----------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 999999899999973 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 172 LDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
||+.++..+.+.|++++++|.|+|++||+++++.. ||++++|++|++
T Consensus 126 LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 126 LDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999998778999999999999975 999999999863
No 239
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=6.9e-49 Score=348.55 Aligned_cols=199 Identities=23% Similarity=0.353 Sum_probs=172.0
Q ss_pred ccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 16 VKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
...++++++++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 3567899999999974 4799999999999999999999999999999999999999999999999765
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHH-----HHHHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI-----ETRSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+++ .|++||+.+..... ..... ...+.++++.+ |+.. .++++.+||||||||++||||
T Consensus 88 ~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 88 SKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 35999999998886 59999997643211 11111 11245678888 6754 578899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEE
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQY 218 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i 218 (291)
|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++..||++++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999875 6899999999999977999999999864
No 240
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.6e-48 Score=383.77 Aligned_cols=209 Identities=21% Similarity=0.334 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEE---CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECCEec----------
Q psy6612 18 HSVAVTSAYKKI---GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFRQI---------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~---~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~---------- 83 (291)
.+|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 379999999999 346799999999999999999999999999999999999995 899999999765
Q ss_pred CeEEEEcCCC---CCCCCCCHHHHHHHhcc--cc---CCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 SDIGYMPQEL---ALHGELSIRETFRYYGY--MF---DMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ~~ig~v~q~~---~l~~~ltv~enl~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iA 153 (291)
+++||+||++ .+++++|+++|+.+... .. .......++++.++++.+++. . .++++++|||||||||+||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 2489999996 58899999999976421 11 122233456788899999995 3 5899999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
|||+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++.. ||++++|++|+++..++..+
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999998779999999999999976 99999999999998776544
No 241
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-48 Score=356.72 Aligned_cols=212 Identities=28% Similarity=0.434 Sum_probs=183.4
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~------- 83 (291)
.+.+|.++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred CCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 3568999999999998999999999999999999999999999999999999986 6899999999765
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhcccc------------CCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCc
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMF------------DMT-DDQIETRSKEILKLLELP----P-AKKIVGA 141 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~------------~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~ 141 (291)
+.++|+||++.+++. |++||+.+..... +.. .....+.+.++++.+++. . .++++.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 200 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG 200 (305)
T ss_pred HHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence 249999999988874 9999998653211 111 122345678889998873 2 4788999
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeE-EEEeCCEEE
Q psy6612 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNI-GLMRDDQYI 219 (291)
Q Consensus 142 LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i-~~l~~G~i~ 219 (291)
||||||||++|||||+++|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++ ++|++|+++
T Consensus 201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~ 279 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGELV 279 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEEE
Confidence 999999999999999999999999999999999999999999999976 4899999999999966 9996 577999999
Q ss_pred EEechhHHHH
Q psy6612 220 GRLVHHDIVE 229 (291)
Q Consensus 220 ~~~~~~~~~~ 229 (291)
..++++++..
T Consensus 280 ~~g~~~~~~~ 289 (305)
T PRK14264 280 EYDDTDKIFE 289 (305)
T ss_pred EeCCHHHHHh
Confidence 9998877654
No 242
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.6e-48 Score=337.80 Aligned_cols=187 Identities=26% Similarity=0.355 Sum_probs=165.9
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEcC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMPQ 91 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~q 91 (291)
|+++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 4689999999999999999999999999999999999999999999999999999999999875 36999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|+.||+.+.....+ .+ ++++.++++.+++.. .++++++||||||||++||||++.+|+++||||||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~--~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHG--GA--QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcC--Cc--HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999888999999987543332 11 345778899999975 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
|||+.++..+++.|.+++++|.|||++||+...+ .|++++
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~ 196 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEAREL 196 (198)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEe
Confidence 9999999999999999977789999999998543 245554
No 243
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-48 Score=332.45 Aligned_cols=165 Identities=38% Similarity=0.640 Sum_probs=154.4
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------CeEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~ig~ 88 (291)
|++++++++|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 4689999999988999999999999999999999999999999999999999999999999764 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
++|++.+++.+|+.||+.+. ||||||||++|||||+.+|+++|||||
T Consensus 81 ~~q~~~~~~~~t~~~~l~~~---------------------------------lS~G~~qr~~la~al~~~p~llilDEP 127 (178)
T cd03229 81 VFQDFALFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDPDVLLLDEP 127 (178)
T ss_pred EecCCccCCCCCHHHheeec---------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 99999999889999997542 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 169 TVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
|+|||+.++..++++|++++++ |.|+|++||+++++.. ||++++|++|+
T Consensus 128 ~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 128 TSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999876 7999999999999975 99999999874
No 244
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=6.2e-48 Score=335.84 Aligned_cols=175 Identities=33% Similarity=0.522 Sum_probs=159.8
Q ss_pred eEEEEeEEEEECC------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEECCEec------C
Q psy6612 19 SVAVTSAYKKIGN------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQI------S 84 (291)
Q Consensus 19 ~l~~~~l~~~~~~------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~------~ 84 (291)
.|++++++++|++ +++++++||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++ +
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4789999999975 68999999999999999999999999999999999999 99999999999875 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
.++|+||++.+++.+|++||+.+.... .+||||||||++|||||+.+|+++|
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~----------------------------~~LS~G~~qrv~laral~~~p~ill 134 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL----------------------------RGLSGGERKRVSIALELVSNPSLLF 134 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh----------------------------ccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 599999999999999999999753210 0899999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHh-HHhh-hCeEEEEeCCEEEEE
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE-EAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~-~~~~-~d~i~~l~~G~i~~~ 221 (291)
|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ++.. ||++++|++|+++..
T Consensus 135 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 135 LDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 99999999999999999999999867899999999996 5654 999999999998754
No 245
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.4e-48 Score=342.79 Aligned_cols=196 Identities=23% Similarity=0.345 Sum_probs=168.8
Q ss_pred eEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 19 SVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++ +.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 3678999999964 4799999999999999999999999999999999999999999999999875 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------------CCCCcCcCChhHHHHHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------------AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQrv~iAra 155 (291)
|+||++.+++ .|++||+.+... ... +++.++++.+++.. .++++.+||+|||||++||||
T Consensus 82 ~~~q~~~l~~-~tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lara 153 (221)
T cd03244 82 IIPQDPVLFS-GTIRSNLDPFGE---YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARA 153 (221)
T ss_pred EECCCCcccc-chHHHHhCcCCC---CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHH
Confidence 9999999876 599999864321 111 23344455444421 246889999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEec
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~ 223 (291)
|+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++..||++++|++|+++..++
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 154 LLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999999864 689999999999997799999999999987654
No 246
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-47 Score=372.32 Aligned_cols=210 Identities=25% Similarity=0.394 Sum_probs=185.0
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~ 93 (291)
+.|++++|+++.|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+. ++.+.+
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----~i~~~~ 94 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----LIAISS 94 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----eEEecc
Confidence 457899999999977 4799999999999999999999999999999999999999999999999752 233445
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
.+++.+|++||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+||
T Consensus 95 ~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgL 174 (549)
T PRK13545 95 GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVG 174 (549)
T ss_pred ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 66777899999987544334444555567788999999975 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|+.++..+++.|++++++|.|||++|||++++.. ||++++|++|+++..++++++...
T Consensus 175 D~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 175 DQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999998778999999999999976 999999999999999988877654
No 247
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.8e-48 Score=331.16 Aligned_cols=162 Identities=30% Similarity=0.499 Sum_probs=151.4
Q ss_pred EEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
++++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 468999999975 5699999999999999999999999999999999999999999999999875 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
++|++.+++. |++||+ ||||||||++|||||+.+|++||||||
T Consensus 81 ~~q~~~~~~~-tv~~~l------------------------------------LS~G~~qrv~la~al~~~p~~lllDEP 123 (173)
T cd03246 81 LPQDDELFSG-SIAENI------------------------------------LSGGQRQRLGLARALYGNPRILVLDEP 123 (173)
T ss_pred ECCCCccccC-cHHHHC------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999988875 999986 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEE
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQY 218 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i 218 (291)
|+|||+.++..+++.|++++++|+|||++||+++++..||++++|++|++
T Consensus 124 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 124 NSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999998778999999999998866999999999864
No 248
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1e-47 Score=336.91 Aligned_cols=191 Identities=23% Similarity=0.326 Sum_probs=167.5
Q ss_pred ceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
..+++++++++|++ .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46889999999975 4799999999999999999999999999999999999999999999999875 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
+|+||++.+++. |++||+.+... ... +.+.++++ .++++.+|||||+||++|||||+.+|+++|||
T Consensus 85 ~~v~q~~~~~~~-tv~~~l~~~~~---~~~----~~~~~~l~------~~~~~~~LS~G~~qrv~laral~~~p~llllD 150 (207)
T cd03369 85 TIIPQDPTLFSG-TIRSNLDPFDE---YSD----EEIYGALR------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLD 150 (207)
T ss_pred EEEecCCcccCc-cHHHHhcccCC---CCH----HHHHHHhh------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 999999988874 99999965321 111 12333333 35678999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEec
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~ 223 (291)
|||+|||+.++..+++.|+++. +|.|+|++||+++++..||++++|++|+++..++
T Consensus 151 EP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999999985 4899999999999996799999999999987664
No 249
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.3e-48 Score=336.78 Aligned_cols=174 Identities=28% Similarity=0.488 Sum_probs=154.1
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------CeEEEEcCCCC--C
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SDIGYMPQELA--L 95 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~ig~v~q~~~--l 95 (291)
|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||++. +
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3567899999999999999999999999999999999999999999999999764 24899999983 4
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCH
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~ 174 (291)
+ ..|++||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||+|||+
T Consensus 82 ~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred c-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 5 4799999987543334444445567888999999975 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEEccCHhH
Q psy6612 175 ILSQIIWDRLKEMALNGKTIIITTHYIEE 203 (291)
Q Consensus 175 ~~~~~i~~~l~~l~~~g~tii~~tHd~~~ 203 (291)
.+++.+.++|++++++|+|||++||++++
T Consensus 161 ~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 161 AGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999998778999999999875
No 250
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.2e-48 Score=332.37 Aligned_cols=166 Identities=28% Similarity=0.474 Sum_probs=153.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.+|++++++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 468899999998 99999999999999999999999999999999999999999999999775 2599
Q ss_pred EEcCCC---CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 88 YMPQEL---ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 88 ~v~q~~---~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
|+||++ .+++.+|++||+.+... ||+|||||++|||||+.+|++||
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------LS~G~~qrl~la~al~~~p~lll 127 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL-------------------------------LSGGNQQKVVLARWLARDPRVLI 127 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh-------------------------------cCHHHHHHHHHHHHHccCCCEEE
Confidence 999995 57888999999876321 99999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
|||||+|||+.+++.+.+.|++++++|.|+|++||+++++.. ||++++|++|++
T Consensus 128 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 128 LDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999997678999999999999976 999999999864
No 251
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.5e-48 Score=352.99 Aligned_cols=201 Identities=25% Similarity=0.426 Sum_probs=177.8
Q ss_pred EEEEeEEEEE--CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKI--GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~--~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
|+++|++++| ++.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++ +.++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 6789999999 45779999999999999999999999999999999999997 799999999876 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCc-----------CChhHHHHHHHHHHH
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGA-----------LSGGQQRRISFAVSL 156 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~-----------LSgGqkQrv~iAral 156 (291)
+||++.+|+. |+++|+..+.. ... +.+.++++.+|+.. .++++.. ||+|||||++|||||
T Consensus 82 v~q~~~lf~~-tv~~nl~~~~~---~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 82 IPQKVFIFSG-TFRKNLDPYGK---WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred ECCCcccchh-hHHHHhhhccC---CCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999985 99999964321 122 34567788888864 4566655 999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+..|||+++|++|+++..++++++...
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC
Confidence 99999999999999999999999999999875 47999999999999877999999999999999999988663
No 252
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6.4e-48 Score=331.01 Aligned_cols=167 Identities=30% Similarity=0.457 Sum_probs=155.4
Q ss_pred EEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEE
Q psy6612 20 VAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v 89 (291)
|++++++++|++. ++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++ +.++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4679999999764 799999999999999999999999999999999999999999999999865 359999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
+|++.+++ .|++||+ +.+||+|||||++|||||+.+|++|||||||
T Consensus 81 ~q~~~~~~-~tv~~~i---------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 81 NQRPYLFD-TTLRNNL---------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred ccCCeeec-ccHHHhh---------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99998886 6999986 7789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
+|||+.+++.+++.|+++. ++.|||++||+++++..||++++|++|+++..
T Consensus 127 ~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 127 VGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHMDKILFLENGKIIMQ 177 (178)
T ss_pred ccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999986 58999999999999977999999999998764
No 253
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-47 Score=333.16 Aligned_cols=175 Identities=29% Similarity=0.419 Sum_probs=158.9
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEECCEec-----CeEE
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQI-----SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~-----~~ig 87 (291)
.|+++++++.|++ +++|+++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++ +.++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5789999999975 78999999999999999999999999999999999986 48999999999885 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
|++|++.+++.+|++||+.+... ++ +||||||||++|||||+.+|++|||||
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~----------------~~------------~LSgGe~qrv~la~al~~~p~vlllDE 134 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL----------------LR------------GLSVEQRKRLTIGVELAAKPSILFLDE 134 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH----------------Hh------------cCCHHHhHHHHHHHHHhcCCcEEEEeC
Confidence 99999999999999999976321 00 899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhH-Hh-hhCeEEEEeC-CEEEEE
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE-AK-GAHNIGLMRD-DQYIGR 221 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~-~~-~~d~i~~l~~-G~i~~~ 221 (291)
||+|||+.++..+++.|++++++|+|||++||+++. +. .||++++|++ |+++..
T Consensus 135 P~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~ 191 (192)
T cd03232 135 PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYF 191 (192)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence 999999999999999999998778999999999984 54 5999999999 998864
No 254
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.6e-47 Score=346.73 Aligned_cols=212 Identities=19% Similarity=0.247 Sum_probs=178.0
Q ss_pred cccccceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------
Q psy6612 13 IIEVKHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------- 83 (291)
Q Consensus 13 ~~~~~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------- 83 (291)
.+.....|++++++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++
T Consensus 13 ~~~~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 13 LVGLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred cccCCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH
Confidence 3445678999999999976 5799999999999999999999999999999999999999999999999876
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET-----RSKEILKLL--ELPP-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|++|++.+++. |+++|+..... ........ .+.++++.+ +++. .++++.+||+|||||++||
T Consensus 93 ~~~~i~~v~q~~~l~~~-tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~la 168 (257)
T cd03288 93 LRSRLSIILQDPILFSG-SIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLA 168 (257)
T ss_pred HhhhEEEECCCCccccc-HHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHH
Confidence 249999999988875 99999853211 11111111 122334444 4443 4567789999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+++.++++. ++.|||++||+++++..||++++|++|+++..++++++..
T Consensus 169 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 169 RAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999975 4799999999999997799999999999999998877654
No 255
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.1e-47 Score=333.83 Aligned_cols=175 Identities=25% Similarity=0.405 Sum_probs=159.9
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEECCEec----------CeEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR--NTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~----------~~ig 87 (291)
|+++|++++|+++++++|+||++++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 4689999999988999999999999999999999999999999999999 479999999999875 1399
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
|+||++.+++.+++.+++ ++...+|||||+||++|||||+.+|+++||||
T Consensus 81 ~v~q~~~~~~~~~~~~~l------------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDE 130 (200)
T cd03217 81 LAFQYPPEIPGVKNADFL------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDE 130 (200)
T ss_pred EeecChhhccCccHHHHH------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999888887765 12236899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh--hhCeEEEEeCCEEEEEech
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK--GAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~--~~d~i~~l~~G~i~~~~~~ 224 (291)
||++||+.++..+++.|++++++++|||++||+++.+. .||++++|++|+++..++.
T Consensus 131 Pt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 131 PDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred CCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 99999999999999999999877899999999999996 5999999999999988743
No 256
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.9e-47 Score=416.43 Aligned_cols=212 Identities=28% Similarity=0.434 Sum_probs=195.4
Q ss_pred cceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeE
Q psy6612 17 KHSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~i 86 (291)
...|+++|++|.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.+
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 34799999999995 57899999999999999999999999999999999999999999999999876 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
||+||++.+++.+||+||+.++.+.++.+.++.+++++++++.+|+.+ .++++++|||||||||+|||||+.+|+++||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLL 1085 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999998776666655566678899999999976 6899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.+++.++++|++++ +|+|||++||+++++.. |||+++|++|+++..|++..+.+
T Consensus 1086 DEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1086 DEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999995 58999999999999976 99999999999999999877654
No 257
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-47 Score=334.23 Aligned_cols=181 Identities=23% Similarity=0.285 Sum_probs=160.0
Q ss_pred eEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC---CCccEEEECCEec--------
Q psy6612 19 SVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT---LDAGTIKLSFRQI-------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~-------- 83 (291)
.+.++|++|.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 467899999995 5689999999999999999999999999999999999999 8999999999875
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
+.++|++|++.+++.+|++||+.+..... .++++.+||+|||||++|||||+.+|++|
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------------------~~~~~~~LS~Ge~qrl~laral~~~p~ll 140 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK----------------------GNEFVRGISGGERKRVSIAEALVSRASVL 140 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc----------------------cccchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 35999999999999999999997642110 46788999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEE-EccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALN-GKTIII-TTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~-~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
||||||+|||+.+++.+++.|++++++ +.|+|+ ++|+.+++.. ||++++|++|+++..
T Consensus 141 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 141 CWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence 999999999999999999999999754 566555 4566778765 999999999998764
No 258
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.7e-47 Score=334.85 Aligned_cols=190 Identities=26% Similarity=0.420 Sum_probs=158.2
Q ss_pred EEEEeEEEEECCE-----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCC
Q psy6612 20 VAVTSAYKKIGNH-----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94 (291)
Q Consensus 20 l~~~~l~~~~~~~-----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~ 94 (291)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----~i~~~~q~~~ 76 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----SIAYVSQEPW 76 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----EEEEEecCch
Confidence 4689999999764 799999999999999999999999999999999999999999999998 6999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHH-----HHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRS-----KEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
+++ .|++||+.+.... ..+...+.. .+.+..+ +++. .++++.+||+|||||++|||||+.+|+++|||
T Consensus 77 l~~-~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD 152 (204)
T cd03250 77 IQN-GTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD 152 (204)
T ss_pred hcc-CcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 885 6999999874322 111111111 1112222 2222 35678899999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHH-HHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCE
Q psy6612 167 EPTVGLDPILSQIIWD-RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~ 217 (291)
|||++||+.+++.+++ +++++.++|.|||++||+++.+..||++++|++|+
T Consensus 153 EP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 153 DPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999998 56667656899999999999997799999999884
No 259
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2e-47 Score=376.28 Aligned_cols=206 Identities=22% Similarity=0.435 Sum_probs=181.4
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.+++++++++ .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+|
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 4788999985 379999999999999999999999999999999999999999999999775 2499
Q ss_pred EEcCCC---CCCCCCCHHHHHHHhcc--cc---C-CChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 88 YMPQEL---ALHGELSIRETFRYYGY--MF---D-MTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 88 ~v~q~~---~l~~~ltv~enl~~~~~--~~---~-~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral 156 (291)
|+||++ .+++.+|+.||+.+... .. + ....+.++++.++++.+++. . .++++.+|||||||||+|||||
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al 410 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL 410 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 999996 57888999999986421 11 1 12233456788899999994 4 6899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++++.. ||++++|++|+++..++++++.
T Consensus 411 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 411 MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 99999999999999999999999999999998779999999999999976 9999999999999998887653
No 260
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-47 Score=376.61 Aligned_cols=205 Identities=21% Similarity=0.346 Sum_probs=178.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..+||++|++.+++.
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--ERLGKLRQDQFAFEE 78 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCcCCC
Confidence 578999999999889999999999999999999999999999999999999999999999874 469999999999999
Q ss_pred CCHHHHHHHhcc-c----------cCCC---------------------hHHHHHHHHHHHHHcCCCC-C-CCCcCcCCh
Q psy6612 99 LSIRETFRYYGY-M----------FDMT---------------------DDQIETRSKEILKLLELPP-A-KKIVGALSG 144 (291)
Q Consensus 99 ltv~enl~~~~~-~----------~~~~---------------------~~~~~~~~~~~l~~~~l~~-~-~~~~~~LSg 144 (291)
+|++||+.+... . +..+ ..+.++++.++++.+|+.. . ++++.+|||
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 999999976321 0 0000 0122356778999999964 3 578999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEe
Q psy6612 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRL 222 (291)
Q Consensus 145 GqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~ 222 (291)
||||||+|||||+.+|++|||||||++||+.++..+.++|.+ .|.|||+||||++++.. ||++++|++|+++ ..|
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g 235 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPG 235 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecC
Confidence 999999999999999999999999999999999999999864 47899999999999976 9999999999994 778
Q ss_pred chhHHH
Q psy6612 223 VHHDIV 228 (291)
Q Consensus 223 ~~~~~~ 228 (291)
+++++.
T Consensus 236 ~~~~~~ 241 (530)
T PRK15064 236 NYDEYM 241 (530)
T ss_pred CHHHHH
Confidence 877654
No 261
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.5e-47 Score=378.90 Aligned_cols=206 Identities=26% Similarity=0.300 Sum_probs=180.2
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
++||+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..+||+||++.+
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~ 81 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--IKVGYLPQEPQL 81 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCCCC
Confidence 45899999999998 789999999999999999999999999999999999999999999999753 569999999999
Q ss_pred CCCCCHHHHHHHhccc-c-------------CCCh----------------------HHHHHHHHHHHHHcCCCCCCCCc
Q psy6612 96 HGELSIRETFRYYGYM-F-------------DMTD----------------------DQIETRSKEILKLLELPPAKKIV 139 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~-~-------------~~~~----------------------~~~~~~~~~~l~~~~l~~~~~~~ 139 (291)
++.+|+.||+.+.... + .... .+..+++.++++.+|+...++++
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 161 (556)
T PRK11819 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKV 161 (556)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCch
Confidence 9999999999764210 0 1010 01235677889999996578899
Q ss_pred CcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
++|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++. .|||++|||++++.. ||++++|++|++
T Consensus 162 ~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999873 499999999999976 999999999998
Q ss_pred E-EEechhHH
Q psy6612 219 I-GRLVHHDI 227 (291)
Q Consensus 219 ~-~~~~~~~~ 227 (291)
+ ..|+.+++
T Consensus 239 ~~~~g~~~~~ 248 (556)
T PRK11819 239 IPWEGNYSSW 248 (556)
T ss_pred EEecCCHHHH
Confidence 6 67776654
No 262
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.1e-47 Score=388.33 Aligned_cols=209 Identities=30% Similarity=0.478 Sum_probs=180.8
Q ss_pred ccccceEEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------
Q psy6612 14 IEVKHSVAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------- 83 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------- 83 (291)
..+...++++|++++|+.. .+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++
T Consensus 466 ~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 466 PKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred cccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH
Confidence 3444568999999999865 699999999999999999999999999999999999999999999999987
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCC-------CC-CCCCc----CcCChhHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-------PP-AKKIV----GALSGGQQRRI 150 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-~~~~~----~~LSgGqkQrv 150 (291)
++||||+|++.+|.. |++||+.+.... .+.++.. +++...|. +. .+.++ ..||||||||+
T Consensus 546 R~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~--~~~e~i~----~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 546 RRQVGYVLQDPFLFSG-SIRENIALGNPE--ATDEEII----EAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred HhheeEEcccchhhcC-cHHHHHhcCCCC--CCHHHHH----HHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 569999999999997 999999875432 2223332 33333332 21 24444 46999999999
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 151 ~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+|||||+++|++||||||||+||+.+.+.+.+.|.++. .|+|+|++||++..++.||||++|++|+++.+|+++++.+.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999999999999999999997 47999999999999999999999999999999999988765
No 263
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.7e-47 Score=379.87 Aligned_cols=203 Identities=25% Similarity=0.386 Sum_probs=174.5
Q ss_pred eEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 19 SVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
.++++|+++.| +++++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.++|.++ +.|+|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 58999998654 5678999999999999999999999999999999999999 9999999999887 36999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHHHHHHH
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRISFAVSL 156 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~iAral 156 (291)
|+|++.+|+. |++||+.++.. ..++++. .++++..+++ . .+..+ ..||||||||++|||||
T Consensus 428 v~Q~~~LF~~-TI~eNI~~g~~--~~~~eei----~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl 500 (588)
T PRK11174 428 VGQNPQLPHG-TLRDNVLLGNP--DASDEQL----QQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL 500 (588)
T ss_pred ecCCCcCCCc-CHHHHhhcCCC--CCCHHHH----HHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 9999999987 99999987531 2333333 3333333331 1 23333 46999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+++|++||||||||+||+.+.+.+.+.|.++. +++|+|++||+++.+..||+|++|++|+++++|+++++.+.
T Consensus 501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence 99999999999999999999999999999986 57999999999999988999999999999999999888653
No 264
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.6e-47 Score=329.25 Aligned_cols=176 Identities=30% Similarity=0.515 Sum_probs=150.7
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCC
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELS 100 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~lt 100 (291)
++++++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~----------~~~~ 70 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL----------SPKE 70 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcC----------CHHH
Confidence 368999999988899999999999999999999999999999999999999999999999875320 0000
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHH
Q psy6612 101 IRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179 (291)
Q Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~ 179 (291)
....+.+. .++++.+++.. .++++.+||+|||||++|||||+.+|+++||||||+|||+.++..
T Consensus 71 ~~~~i~~~---------------~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~ 135 (180)
T cd03214 71 LARKIAYV---------------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135 (180)
T ss_pred HHHHHhHH---------------HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 11111111 01678888865 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 180 IWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 180 i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
+.+.|.+++++ +.|+|++||+++++.. ||++++|++|+++..
T Consensus 136 ~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 136 LLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 99999999765 8999999999999965 999999999998754
No 265
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-47 Score=330.59 Aligned_cols=186 Identities=19% Similarity=0.313 Sum_probs=165.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----CeEEEEcCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----SDIGYMPQEL 93 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----~~ig~v~q~~ 93 (291)
||++++++++|+++.+++ +||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++ +.++|++|++
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 578999999998776665 9999999999999999999999999999999999999999999876 3489999998
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
.+++.+|+.||+.+....++ ..+.+.++++.+++.. .++++.+||||||||++||||++.+|+++||||||+||
T Consensus 80 ~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~L 154 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNL 154 (195)
T ss_pred CCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 88888999999987543322 1345677889999965 68899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeE
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i 210 (291)
|+.++..+.+.|++..++|.|+|++||+++++..||.+
T Consensus 155 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 155 SKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 99999999999987766789999999999999888765
No 266
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=7.7e-47 Score=335.58 Aligned_cols=197 Identities=29% Similarity=0.428 Sum_probs=168.4
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCCCCCC--CCCHHHHHHHhccc--
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQELALHG--ELSIRETFRYYGYM-- 111 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~~l~~--~ltv~enl~~~~~~-- 111 (291)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||++.+++ .+|+.+|+.+....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999999999999999999875 46999999987643 47999999764221
Q ss_pred --cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH
Q psy6612 112 --FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188 (291)
Q Consensus 112 --~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 188 (291)
.........+++.++++.+++.. .++++.+||||||||++|||||+++|+++||||||+|||+.++..+.+.|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 11122233456788999999975 688899999999999999999999999999999999999999999999999998
Q ss_pred hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 189 LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 189 ~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
++|+|+|++||+++++.. ||+++++ +|+++..++.+++.+. ..+.+.|
T Consensus 161 ~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~--~~~~~~~ 209 (223)
T TIGR03771 161 GAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP--APWMTTF 209 (223)
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh--HHHHHHh
Confidence 778999999999999866 9999999 8999999988876553 3344444
No 267
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-47 Score=375.03 Aligned_cols=206 Identities=21% Similarity=0.376 Sum_probs=180.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~ 88 (291)
.+++++++. ..+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++ ..++|
T Consensus 257 ~l~~~~~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 332 (501)
T PRK11288 257 RLRLDGLKG----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332 (501)
T ss_pred EEEEecccc----CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEE
Confidence 578888873 2589999999999999999999999999999999999999999999999865 35899
Q ss_pred EcCCC---CCCCCCCHHHHHHHhcccc----C--CChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 89 MPQEL---ALHGELSIRETFRYYGYMF----D--MTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 89 v~q~~---~l~~~ltv~enl~~~~~~~----~--~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+||++ .+++.+|+.||+.+..... + ......++.+.++++.+++. . .++++.+|||||||||+|||||+
T Consensus 333 ~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~ 412 (501)
T PRK11288 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS 412 (501)
T ss_pred cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc
Confidence 99997 4888899999987642211 1 12223345678899999994 4 68999999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++.. ||++++|++|++++.+..++..
T Consensus 413 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 413 EDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred cCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999999998789999999999999976 9999999999999999877654
No 268
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.9e-47 Score=373.28 Aligned_cols=208 Identities=23% Similarity=0.345 Sum_probs=180.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~i 86 (291)
+.+|+++++++ .+|+++||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++ ..+
T Consensus 266 ~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 266 APVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred CceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 44799999984 269999999999999999999999999999999999999999999999865 259
Q ss_pred EEEcCCC---CCCCCCCHHHHHHHhcc--c-cCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 87 GYMPQEL---ALHGELSIRETFRYYGY--M-FDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 87 g~v~q~~---~l~~~ltv~enl~~~~~--~-~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
+|+||++ .+++.+|+.+|+..... . ........++.+.++++.+++. . .++++++|||||||||+|||||+.
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~ 420 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA 420 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh
Confidence 9999985 58888999999864211 1 1111223345678899999996 4 689999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 421 ~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 421 SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred CCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 999999999999999999999999999998778999999999999976 99999999999999998876543
No 269
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.4e-47 Score=385.29 Aligned_cols=201 Identities=24% Similarity=0.402 Sum_probs=176.2
Q ss_pred ceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
..++++|++++|+ ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++ +.+
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 4689999999994 46899999999999999999999999999999999999999999999999987 369
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCCc----CcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKIV----GALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~----~~LSgGqkQrv~iAr 154 (291)
|||||++.+|+. |++||+.++.. .+++ ++.++++..++++ .+..+ ..||||||||++|||
T Consensus 530 ~~v~Q~~~lf~g-TI~eNi~~~~~---~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR 601 (686)
T TIGR03797 530 GVVLQNGRLMSG-SIFENIAGGAP---LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601 (686)
T ss_pred EEEccCCccCcc-cHHHHHhcCCC---CCHH----HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999999999987 99999987532 2333 3455566555531 23333 469999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+++|++||||||||+||+.+.+.+.+.|+++ ++|+|++||+++.+..||+|++|++|+++++|+++++.+
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999886 579999999999998899999999999999999988764
No 270
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=8.1e-47 Score=382.00 Aligned_cols=208 Identities=28% Similarity=0.444 Sum_probs=184.5
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC--ccEEEECCEec-----CeEEEEcCCCC
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD--AGTIKLSFRQI-----SDIGYMPQELA 94 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~--~G~I~~~g~~~-----~~ig~v~q~~~ 94 (291)
.++++++|+++.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|+++ +++|||+|++.
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~ 150 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDI 150 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccc
Confidence 456788898899999999999999999999999999999999999999885 89999999875 46999999999
Q ss_pred CCCCCCHHHHHHHhcccc---CCChHHHHHHHHHHHHHcCCCC-C-----CCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 95 LHGELSIRETFRYYGYMF---DMTDDQIETRSKEILKLLELPP-A-----KKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~-~-----~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
+++.+||+||+.+..... ..+.++.+++++++++.+|+.+ . ++.+++||||||||++|||||+.+|++|+|
T Consensus 151 l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlL 230 (659)
T PLN03211 151 LYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 230 (659)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEE
Confidence 999999999998865432 2234455567889999999964 3 345678999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHh-HHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE-EAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~-~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+.+.|++++++|+|||++||+++ .+.. ||++++|++|+++..|+++++.+
T Consensus 231 DEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 231 DEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999999999877999999999998 4644 99999999999999999887654
No 271
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.6e-46 Score=373.82 Aligned_cols=207 Identities=26% Similarity=0.324 Sum_probs=178.4
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
+.|++++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+||++|++.+
T Consensus 2 ~~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~ 79 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG--IKVGYLPQEPQL 79 (552)
T ss_pred cEEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCC
Confidence 34789999999998 788999999999999999999999999999999999999999999999763 579999999999
Q ss_pred CCCCCHHHHHHHhccc--------------cCCChHH----------------------HHHHHHHHHHHcCCCCCCCCc
Q psy6612 96 HGELSIRETFRYYGYM--------------FDMTDDQ----------------------IETRSKEILKLLELPPAKKIV 139 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~--------------~~~~~~~----------------------~~~~~~~~l~~~~l~~~~~~~ 139 (291)
++++|+.||+.+.... +..+..+ ...++.++++.+++...++++
T Consensus 80 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 159 (552)
T TIGR03719 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADV 159 (552)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCch
Confidence 9999999999864211 0111111 124566778888886567899
Q ss_pred CcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
++|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++. .|||+||||++++.. ||++++|++|++
T Consensus 160 ~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~---~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 160 TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998872 599999999999976 999999999997
Q ss_pred E-EEechhHHH
Q psy6612 219 I-GRLVHHDIV 228 (291)
Q Consensus 219 ~-~~~~~~~~~ 228 (291)
+ ..|..+++.
T Consensus 237 ~~~~g~~~~~~ 247 (552)
T TIGR03719 237 IPWEGNYSSWL 247 (552)
T ss_pred EEecCCHHHHH
Confidence 5 667776543
No 272
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-47 Score=322.75 Aligned_cols=160 Identities=34% Similarity=0.555 Sum_probs=149.3
Q ss_pred EEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
|++++++++|+++ ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4689999999876 899999999999999999999999999999999999999999999999875 25999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
+||++.+++ .|++||+ ||+|||||++|||||+.+|++||||||
T Consensus 81 ~~~~~~~~~-~t~~e~l------------------------------------LS~G~~~rl~la~al~~~p~llllDEP 123 (171)
T cd03228 81 VPQDPFLFS-GTIRENI------------------------------------LSGGQRQRIAIARALLRDPPILILDEA 123 (171)
T ss_pred EcCCchhcc-chHHHHh------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999998876 5999886 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCE
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~ 217 (291)
|+|||+.++..+.++|+++++ ++|||++||+++++..||++++|++|+
T Consensus 124 ~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 124 TSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999964 699999999999996699999999874
No 273
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=7.1e-47 Score=378.03 Aligned_cols=206 Identities=24% Similarity=0.391 Sum_probs=176.9
Q ss_pred ceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
..++++|++++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++ +.+
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 419 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQV 419 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhc
Confidence 35899999999964 6799999999999999999999999999999999999999999999999986 459
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~iAr 154 (291)
+|+||++.+|+. |++||+.++.. ...+++ ++.++++.+++. . .+..+ .+||||||||++|||
T Consensus 420 ~~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 420 ALVSQNVHLFND-TIANNIAYART-EQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred eEEccCceeecc-hHHHHHhcCCC-CCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 999999999986 99999986421 112233 344445554432 1 23333 469999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+++|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+..||+|++|++|+++++|+++++.+.
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999985 46999999999999888999999999999999999887653
No 274
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=371.92 Aligned_cols=202 Identities=27% Similarity=0.376 Sum_probs=178.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCC--C
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA--L 95 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~--l 95 (291)
.+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ ..+||++|++. +
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~~~q~~~~~~ 395 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--ANIGYYAQDHAYDF 395 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--eEEEEEcccccccC
Confidence 4899999999999889999999999999999999999999999999999999999999999885 56999999974 5
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
++.+|+.+|+.+... . ...++++.++++.+++. . .++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus 396 ~~~~t~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD 470 (530)
T PRK15064 396 ENDLTLFDWMSQWRQ----E-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470 (530)
T ss_pred CCCCcHHHHHHHhcc----C-CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 667899999864321 1 11235678899999994 3 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHHHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDIVE 229 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~~ 229 (291)
+.++..+++.|+++ +.|||++|||++++.. ||++++|++|+++ ..|++.++.+
T Consensus 471 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 471 MESIESLNMALEKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999999987 3599999999999976 9999999999997 7777765543
No 275
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.3e-46 Score=375.37 Aligned_cols=207 Identities=30% Similarity=0.449 Sum_probs=180.6
Q ss_pred ceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 18 HSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
..++++|++++|+ ++++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++ +.|+
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 3489999999999 68999999999999999999999999999999999999999999999999987 4599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH-----HHHcCCCC-CCCCc----CcCChhHHHHHHHHHHHh
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI-----LKLLELPP-AKKIV----GALSGGQQRRISFAVSLL 157 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~-----l~~~~l~~-~~~~~----~~LSgGqkQrv~iAral~ 157 (291)
||||++.+|.. |++||+.++... .++++..+.++.+ +..+ +. .+..+ ..||||||||++||||++
T Consensus 407 ~V~Qd~~LF~~-TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 407 IVSQDPLLFSG-TIRENIALGRPD--ATDEEIEEALKLANAHEFIANL--PDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred EEcccceeecc-cHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhC--cccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 99999999995 999999986432 3444544444332 2222 22 34445 469999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
.+|++||||||||+||+.+...+.+.+.++. +++|+|+++|+++.+..||+|++|++|++++.|+++++...
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 9999999999999999999999999999887 56899999999999999999999999999999999998764
No 276
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-46 Score=368.92 Aligned_cols=207 Identities=23% Similarity=0.389 Sum_probs=178.8
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----------eEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----------DIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----------~ig 87 (291)
.+|+++|+++.+ +.+|+++||++++||++||+||||||||||+|+|+|+.+|++|+|+++|+++. .++
T Consensus 249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 478999999874 46999999999999999999999999999999999999999999999998762 289
Q ss_pred EEcCCC---CCCCCCCHHHHH-----HHhccccCC-ChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 88 YMPQEL---ALHGELSIRETF-----RYYGYMFDM-TDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 88 ~v~q~~---~l~~~ltv~enl-----~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral 156 (291)
|+||++ .+|+++|+.+|. .+....++. .....++.+.++++.+++. . .++++++|||||||||+|||||
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 406 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWL 406 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHH
Confidence 999985 478888887773 222111121 2233456678899999994 3 6899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++.. ||++++|++|++++.++.+.
T Consensus 407 ~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 407 LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999998779999999999999976 99999999999998776643
No 277
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.5e-46 Score=330.63 Aligned_cols=188 Identities=27% Similarity=0.405 Sum_probs=159.2
Q ss_pred EEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeE
Q psy6612 21 AVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDI 86 (291)
Q Consensus 21 ~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~i 86 (291)
.+.+++++|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 4788999996 46799999999999999999999999999999999999999999999998753 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-----------C-CCCCcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-----------P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+|++|++.++ ..|++||+.+.... ... ...++++.+++. . .++++.+||||||||++|||
T Consensus 82 ~~~~q~~~~~-~~t~~~nl~~~~~~---~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 82 AYAAQKPWLL-NATVEENITFGSPF---NKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred EEEcCCCccc-cccHHHHHhhcCcC---CHH----HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 9999999888 47999999874321 111 122334444432 1 24678999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHH--HHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCC
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWD--RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDD 216 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~--~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G 216 (291)
||+.+|++|||||||+|||+.++..+++ +++.++++|.|+|++||+++.+..||++++|++|
T Consensus 154 al~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCC
Confidence 9999999999999999999999999998 6666666689999999999998779999999987
No 278
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.7e-46 Score=373.78 Aligned_cols=204 Identities=23% Similarity=0.375 Sum_probs=178.5
Q ss_pred ceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 18 HSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
..+++++++++|++ +++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++ +.|+
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 45899999999964 6799999999999999999999999999999999999999999999999987 4599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCC----CcCcCChhHHHHHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKK----IVGALSGGQQRRISFAVS 155 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~----~~~~LSgGqkQrv~iAra 155 (291)
|+||++.+|++ |+++|+.++. ..+++ ++.++++.+|+.+ .+. .-..||||||||++||||
T Consensus 419 ~v~Q~~~lF~~-Ti~~NI~~~~---~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARa 490 (592)
T PRK10790 419 MVQQDPVVLAD-TFLANVTLGR---DISEE----QVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490 (592)
T ss_pred EEccCCccccc-hHHHHHHhCC---CCCHH----HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999998 9999998753 22333 3455555555431 233 335699999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999864 6999999999999988999999999999999999987643
No 279
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.2e-46 Score=316.00 Aligned_cols=151 Identities=30% Similarity=0.537 Sum_probs=139.1
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----------eEEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----------DIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----------~ig~v 89 (291)
|++++++++|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++|+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~ 80 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEE
Confidence 46899999999889999999999999999999999999999999999999999999999997642 13333
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|| ||+|||||++|||||+.+|++|||||||
T Consensus 81 ~q--------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~ 110 (163)
T cd03216 81 YQ--------------------------------------------------LSVGERQMVEIARALARNARLLILDEPT 110 (163)
T ss_pred Ee--------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 33 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEE
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~ 220 (291)
+|||+.+++.+.+.|++++++|.|||++||+++++.. ||++++|++|++++
T Consensus 111 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 111 AALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999998778999999999999866 99999999999864
No 280
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-46 Score=364.06 Aligned_cols=203 Identities=31% Similarity=0.472 Sum_probs=177.3
Q ss_pred EEEEeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 20 VAVTSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
++.+++++.|++. ++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+. ++++||
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 3345999999654 999999999999999999999999999999999999999999999999876 469999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-------CCCCcCc----CChhHHHHHHHHHHHhc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-------AKKIVGA----LSGGQQRRISFAVSLLH 158 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~----LSgGqkQrv~iAral~~ 158 (291)
+|+|.+|+. |++||+.++.. ..+++ .+.++++..++.+ .|..+++ |||||+|||++||||++
T Consensus 401 ~Q~p~lf~g-TireNi~l~~~--~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 401 SQNPYLFAG-TIRENILLARP--DASDE----EIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred CCCCccccc-cHHHHhhccCC--cCCHH----HHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 999999998 99999987532 23333 3445555555421 3555555 99999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+++++|+||||++||.++.+.+.+.|.++.+ ++|+|++||++..+..||+|++|++|++++.|.++++.++
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999999999999999999999999985 4999999999999999999999999999999999988553
No 281
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.4e-46 Score=381.24 Aligned_cols=203 Identities=24% Similarity=0.345 Sum_probs=175.4
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+..|+++|++++|++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++ +.
T Consensus 475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 446899999999974 6799999999999999999999999999999999999999999999999987 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCC----cCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKI----VGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~----~~~LSgGqkQrv~iA 153 (291)
||||||++.+|+. |++||+.++.. ..+++ ++.++++..++. . .+.. -..||||||||++||
T Consensus 555 i~~v~Q~~~lf~g-Ti~eNi~l~~~--~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLA 627 (710)
T TIGR03796 555 VAMVDQDIFLFEG-TVRDNLTLWDP--TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA 627 (710)
T ss_pred eeEEecCChhhhc-cHHHHhhCCCC--CCCHH----HHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHH
Confidence 9999999999986 99999986421 22333 334444444442 1 2333 356999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+++|++||||||||+||+.+.+.+.+.|++ .++|+|++||+++.+..||+|++|++|+++++|+++++.+
T Consensus 628 Rall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 628 RALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999999999999999986 4799999999999998899999999999999999988764
No 282
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.6e-46 Score=349.99 Aligned_cols=181 Identities=35% Similarity=0.508 Sum_probs=164.1
Q ss_pred EECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH
Q psy6612 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122 (291)
Q Consensus 50 liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~ 122 (291)
|+||||||||||+|+|+|+++|++|+|.++|+++ +++||+||++.+|+.+|++||+.|....++.+..+.+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999999999999999876 359999999999999999999998654444444555667
Q ss_pred HHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccC
Q psy6612 123 SKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHY 200 (291)
Q Consensus 123 ~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd 200 (291)
+.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 889999999976 68999999999999999999999999999999999999999999999999999754 8999999999
Q ss_pred HhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 201 IEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 201 ~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++++.. ||++++|++|+++..++++++.+.
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999976 999999999999999998887653
No 283
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.2e-46 Score=317.60 Aligned_cols=162 Identities=30% Similarity=0.426 Sum_probs=148.6
Q ss_pred EEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 20 VAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 20 l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
+++++++++|+ ++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++|++|++.++ .
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--~~i~~~~q~~~~~-~ 77 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLPQRPYLP-L 77 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--ceEEEECCCCccc-c
Confidence 46799999995 468999999999999999999999999999999999999999999999885 6799999998876 5
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHH
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~ 178 (291)
.|+.||+.+. ++.+||||||||++|||||+.+|+++||||||++||+.++.
T Consensus 78 ~tv~~nl~~~-----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~ 128 (166)
T cd03223 78 GTLREQLIYP-----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESED 128 (166)
T ss_pred ccHHHHhhcc-----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHH
Confidence 6999998642 46889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCC
Q psy6612 179 IIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDD 216 (291)
Q Consensus 179 ~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G 216 (291)
.+.+.|+++ +.|+|++||+++....||++++|+++
T Consensus 129 ~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 129 RLYQLLKEL---GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHh---CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999986 58999999999877669999999876
No 284
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=7.7e-46 Score=375.03 Aligned_cols=211 Identities=25% Similarity=0.363 Sum_probs=190.3
Q ss_pred cceEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 17 KHSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
..||+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 2 ~~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 2 TALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred CcEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence 357999999999953 5799999999999999999999999999999999999999999999999875
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
+.++|+||++.+++.+|+.||+.+.....+....+.++++.++++.+++.. .++++.+||+||+||++|||||+.
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 248999999999999999999987543334344455667889999999976 689999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+|++|||||||+|||+.+++.+.++|++++++|+|+|++||+++.+..||++++|++|+++.+++.++.
T Consensus 162 ~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 162 GGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCcccc
Confidence 999999999999999999999999999998778999999999998877999999999999998877654
No 285
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.1e-46 Score=374.57 Aligned_cols=206 Identities=30% Similarity=0.449 Sum_probs=180.4
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
...++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 336 ~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 336 QVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred CCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 346999999999964 5799999999999999999999999999999999999999999999999986 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-C------CC----CcCcCChhHHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-A------KK----IVGALSGGQQRRISFAV 154 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~------~~----~~~~LSgGqkQrv~iAr 154 (291)
++|+||++.+|+. |++||+.++.. ..+ .+.+.++++.+++++ . +. ....||||||||++|||
T Consensus 416 i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialAR 488 (574)
T PRK11160 416 ISVVSQRVHLFSA-TLRDNLLLAAP--NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIAR 488 (574)
T ss_pred eeEEcccchhhcc-cHHHHhhcCCC--ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHH
Confidence 9999999999986 99999987532 122 235666777777743 2 22 34569999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+++|++|||||||++||+.+++.+.+.|.++. +++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 489 all~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 489 ALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence 9999999999999999999999999999999986 47999999999999988999999999999999998887643
No 286
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.7e-46 Score=369.18 Aligned_cols=209 Identities=25% Similarity=0.415 Sum_probs=178.1
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+..++++|++++|++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 314 ~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 314 EGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 346999999999953 6899999999999999999999999999999999999999999999999876 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH-----HHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR-----SKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
++|+||++.+|+. |++||+.++.. ..++++..+. +.+.++.+ |++. .......||||||||++||||++
T Consensus 394 i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 394 IGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred eEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 9999999999987 99999985432 1233332222 22344444 3332 34556789999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
++|++|||||||++||+.+++.+.+.|+++..+++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999999875689999999999988779999999999999999987664
No 287
>KOG0058|consensus
Probab=100.00 E-value=1.5e-46 Score=370.79 Aligned_cols=212 Identities=28% Similarity=0.447 Sum_probs=183.8
Q ss_pred cccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------
Q psy6612 15 EVKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------- 83 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------- 83 (291)
.++..++++|+++.|.. .++|+|+||+|+|||++||+||||+||||+.++|..++.|++|+|.+||.++
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 46678999999999964 5799999999999999999999999999999999999999999999999998
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH--HHH-cCCCC-CCCCc----CcCChhHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI--LKL-LELPP-AKKIV----GALSGGQQRRISFAV 154 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~--l~~-~~l~~-~~~~~----~~LSgGqkQrv~iAr 154 (291)
++||+|-|+|.||.. |++|||.|+.. ..+.+++...++.+ -++ .++++ .+..+ .+||||||||+||||
T Consensus 541 r~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 469999999999997 99999998765 44445444333322 111 12332 34444 479999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+++|.||||||.||+||.++...+.+.|.++.+ ++|||++.|.++.++.||+|+++++|++++.|+++++.+.
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSK 692 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhC
Confidence 99999999999999999999999999999999874 5999999999999999999999999999999999988765
No 288
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4e-46 Score=379.90 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=177.3
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
...++++|++++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++ +.
T Consensus 461 ~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred cceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 346899999999963 5799999999999999999999999999999999999999999999999987 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CC----CCcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AK----KIVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~----~~~~~LSgGqkQrv~iA 153 (291)
++||+|++.+|+. |++||+.++.. ..+++ ++.++++..++. . .+ ..-..||||||||++||
T Consensus 541 i~~v~Q~~~lf~~-TI~eNi~~~~~--~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 541 IGYVPQDPRLFYG-TLRDNIALGAP--YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613 (694)
T ss_pred cEEECCChhhhhh-hHHHHHhCCCC--CCCHH----HHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 9999999999986 99999987532 12333 334444444432 1 22 23356999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+.+|++||||||||+||+.+.+.+.+.|.++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999999999999986 47999999999999988999999999999999999887653
No 289
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-46 Score=335.33 Aligned_cols=185 Identities=27% Similarity=0.416 Sum_probs=169.0
Q ss_pred ceEEEEeEEEEECC---------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEE
Q psy6612 18 HSVAVTSAYKKIGN---------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY 88 (291)
Q Consensus 18 ~~l~~~~l~~~~~~---------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~ 88 (291)
.+++++|+++.|.. ..|++||||+|++||++||+|+||||||||-|+|+|+++|++|+|+++|+++..+.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 46889999999942 48999999999999999999999999999999999999999999999998864432
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
..+..+++.++|+.+|+.. .++++++|||||+||++|||||+.+|+++++|
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~D 134 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVAD 134 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEec
Confidence 3445677899999999964 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+|+||...+.+++++|.++++ .|.|.+++|||++.+.. |||+++|..|++++.++.+++...
T Consensus 135 EpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 135 EPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred CchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 99999999999999999999985 49999999999999987 999999999999999999888764
No 290
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.5e-46 Score=365.60 Aligned_cols=205 Identities=25% Similarity=0.421 Sum_probs=174.0
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECCEec----------Ce
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFRQI----------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~----------~~ 85 (291)
+.+|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++ +.
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 4589999999999988899999999999999999999999999999999998876 699999998643 34
Q ss_pred EEEEcCCCCCCCC--CCHHHHHHHhcc----ccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 86 IGYMPQELALHGE--LSIRETFRYYGY----MFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 86 ig~v~q~~~l~~~--ltv~enl~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+||++|++.++.. .++.+++.+... .+.......++++.++++.+++.. .++++.+|||||||||+|||||+
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 417 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV 417 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence 9999999765442 467666643211 111112233457888999999964 58899999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCC-cEEEEEccCHhHHh-h-hCeEEEEeCCEEEEE
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG-KTIIITTHYIEEAK-G-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~tHd~~~~~-~-~d~i~~l~~G~i~~~ 221 (291)
.+|++|||||||+|||+.++..++++|+++++++ .|||++|||++++. . ||++++|++|+++..
T Consensus 418 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 418 KHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999998665 57999999999995 3 899999999998764
No 291
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.3e-45 Score=365.52 Aligned_cols=206 Identities=26% Similarity=0.374 Sum_probs=177.3
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC-CC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL-AL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~-~l 95 (291)
+.+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++ + ..+||+||++ .+
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-~~i~~v~q~~~~~ 397 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-VKLAYVDQSRDAL 397 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c-eEEEEEeCCcccc
Confidence 4589999999999988999999999999999999999999999999999999999999999954 2 2699999997 47
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
++.+|+.||+.+....++.... ...+.++++.+++.. .++++++|||||||||+|||||+.+|++|||||||+|||
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD 475 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475 (552)
T ss_pred CCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 8889999999875432222211 223557899999963 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC-CEEE-EEechhHHHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD-DQYI-GRLVHHDIVE 229 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~-G~i~-~~~~~~~~~~ 229 (291)
+.++..++++|+++. + |||++|||++++.. ||++++|++ |++. ..|..++..+
T Consensus 476 ~~~~~~l~~~l~~~~--~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 476 VETLRALEEALLEFA--G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHHHHHHHHHHHHCC--C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999983 3 89999999999976 999999987 5765 5566655443
No 292
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5e-46 Score=379.95 Aligned_cols=205 Identities=28% Similarity=0.394 Sum_probs=176.3
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
...++++|++++|+ ++++|+|+||+|++|+.+||+||||||||||+++|+|+++|++|+|++||.++ +.|
T Consensus 471 ~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 471 NGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred CCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 44689999999996 46899999999999999999999999999999999999999999999999986 369
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCC----CcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKK----IVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~----~~~~LSgGqkQrv~iAr 154 (291)
|||||++.+|+. |++||+.++.. ...++++ +.++++..++. . .+. ....||||||||++|||
T Consensus 551 ~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 551 NYLPQEPYIFSG-SILENLLLGAK-ENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred EEEecCceehhH-HHHHHHhccCC-CCCCHHH----HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 999999999987 99999987521 1223333 33444444431 1 233 33569999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++++|++||||||||+||+.+.+.+.+.|+++ +++|+|++||+++.+..||+|++|++|+++++|+++++.+
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999986 4789999999999998899999999999999999887754
No 293
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.4e-46 Score=379.86 Aligned_cols=203 Identities=25% Similarity=0.371 Sum_probs=173.0
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
+..++++|++++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++ +
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 446999999999964 5799999999999999999999999999999999999999999999999986 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCC----cCcCChhHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKI----VGALSGGQQRRISF 152 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~----~~~LSgGqkQrv~i 152 (291)
+|+||+|++.+|+. |++||+.++.. ..+++ ++.++++..++.+ .+.. -.+||||||||++|
T Consensus 556 ~i~~v~Q~~~lF~g-TIreNI~~g~~--~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlal 628 (711)
T TIGR00958 556 QVALVGQEPVLFSG-SVRENIAYGLT--DTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAI 628 (711)
T ss_pred hceEEecCcccccc-CHHHHHhcCCC--CCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHH
Confidence 69999999999986 99999987532 22222 3444555554421 2333 34699999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||++++|++||||||||+||+.+.+.+.+ .. ..+++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 629 ARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 629 ARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999999999999999988 22 235799999999999998899999999999999999988764
No 294
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.4e-45 Score=367.74 Aligned_cols=205 Identities=24% Similarity=0.356 Sum_probs=175.6
Q ss_pred cceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
+..+++++++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ +.|
T Consensus 332 ~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 332 KGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred CCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 346999999999965 6799999999999999999999999999999999999999999999999886 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CC----CCcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AK----KIVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~----~~~~~LSgGqkQrv~iAr 154 (291)
+|+||++.+|+. |++||+.++.. ..++++ +.++++.+++. . .+ .....||||||||++|||
T Consensus 412 ~~v~Q~~~lf~~-Ti~~Ni~~~~~--~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialAR 484 (588)
T PRK13657 412 AVVFQDAGLFNR-SIEDNIRVGRP--DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIAR 484 (588)
T ss_pred EEEecCcccccc-cHHHHHhcCCC--CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHH
Confidence 999999999986 99999987521 223333 33333333321 1 22 233469999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+++|+++|||||||+||+.+.+.+++.|.++. +++|+|++||+++.++.||++++|++|++++.|+++++.+
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999875 4799999999999988899999999999999999887754
No 295
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.4e-45 Score=363.85 Aligned_cols=207 Identities=26% Similarity=0.384 Sum_probs=178.5
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC-CC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL-AL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~-~l 95 (291)
+.+|+++++++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..+||+||++ .+
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-~~i~~v~q~~~~~ 399 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-VKLAYVDQSRDAL 399 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c-eEEEEEeCchhhc
Confidence 4589999999999999999999999999999999999999999999999999999999999954 2 3699999997 78
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
++.+|+.||+.+.....+.... ...+.++++.+++.. .++++++|||||||||+|||||+.+|++|||||||+|||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477 (556)
T ss_pred CCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 8889999999875433222211 123456899999963 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC-CEEE-EEechhHHHHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD-DQYI-GRLVHHDIVES 230 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~-G~i~-~~~~~~~~~~~ 230 (291)
+.++..+++.|+++. + |||++|||++++.. ||++++|++ |++. ..|+.+++.+.
T Consensus 478 ~~~~~~l~~~l~~~~--~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 478 VETLRALEEALLEFP--G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHHHHHHHHHHhCC--C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999973 4 89999999999976 999999986 7775 46776665443
No 296
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.4e-45 Score=333.92 Aligned_cols=201 Identities=25% Similarity=0.292 Sum_probs=166.9
Q ss_pred ccccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC
Q psy6612 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~ 93 (291)
..-.+.|+++++++. ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++
T Consensus 34 ~~~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----~i~yv~q~~ 107 (282)
T cd03291 34 SSDDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----RISFSSQFS 107 (282)
T ss_pred CCCCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----EEEEEeCcc
Confidence 334556889999985 46799999999999999999999999999999999999999999999998 499999999
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC------------CCCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP------------PAKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
.+++. |++||+.+.... ... ++.++++.+++. ..++++.+||||||||++|||||+.+|+
T Consensus 108 ~l~~~-tv~enl~~~~~~---~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 108 WIMPG-TIKENIIFGVSY---DEY----RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred ccccc-CHHHHhhccccc---CHH----HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 88875 999999864221 111 111222222221 1234568999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHH-HHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRL-KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+|||+.++..+.+.+ .++. ++.|||++||+++++..||++++|++|+++..++++++..
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999865 5554 4789999999999987799999999999999999887654
No 297
>KOG0057|consensus
Probab=100.00 E-value=1e-45 Score=354.69 Aligned_cols=205 Identities=25% Similarity=0.397 Sum_probs=181.3
Q ss_pred ccceEEEEeEEEEECCEe-eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 16 VKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~-~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
....|+++|++++|++++ +|+++||+|++||-+||+|+|||||||++|+|.++.. ++|+|.+||.++ +-
T Consensus 348 ~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred CCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhh
Confidence 455699999999999877 9999999999999999999999999999999999999 899999999998 24
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-C-------CC----CcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-A-------KK----IVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-------~~----~~~~LSgGqkQrv~iA 153 (291)
||||||+..||++ |+..|+.|+.. ..+. +++.++.+.+++++ . .+ +-..|||||||||+||
T Consensus 427 Ig~VPQd~~LFnd-TIl~NI~YGn~--sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsla 499 (591)
T KOG0057|consen 427 IGVVPQDSVLFND-TILYNIKYGNP--SASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLA 499 (591)
T ss_pred eeEeCCcccccch-hHHHHhhcCCC--CcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHH
Confidence 9999999999998 99999987642 1222 34566677777753 1 12 2235999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||++.+|+++++|||||+||.++.+.+++.+.+. ..++|+|++-|+++.++.||+|+++++|++.+.|+++++..
T Consensus 500 Ra~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 500 RAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999999999994 35899999999999999999999999999999999999876
No 298
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-45 Score=341.15 Aligned_cols=215 Identities=22% Similarity=0.361 Sum_probs=194.3
Q ss_pred ccceEEEEeEEEEEC-----------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-
Q psy6612 16 VKHSVAVTSAYKKIG-----------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~-----------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~- 83 (291)
-...|+.+++...|. ...+++++||++.+||.+||+|+||||||||-++|.++++++ |+|.|+|+++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence 344678888888882 246999999999999999999999999999999999999886 9999999987
Q ss_pred -----------CeEEEEcCCC--CCCCCCCHHHHHHHhccccC--CChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhH
Q psy6612 84 -----------SDIGYMPQEL--ALHGELSIRETFRYYGYMFD--MTDDQIETRSKEILKLLELPP--AKKIVGALSGGQ 146 (291)
Q Consensus 84 -----------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGq 146 (291)
+++..||||| +|.|.|||.+.+.-+...+. .+..+..+++.++|+.+||+. .+++|+++||||
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ 431 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ 431 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch
Confidence 3599999998 58999999999987766553 567777889999999999976 689999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEech
Q psy6612 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 147 kQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~ 224 (291)
|||++||||++.+|++++||||||+||..-+.++.++|++|. +.|.+-+|+|||+..++. ||++++|++|+|+++|+.
T Consensus 432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~ 511 (534)
T COG4172 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPT 511 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCH
Confidence 999999999999999999999999999999999999999997 568999999999999977 999999999999999999
Q ss_pred hHHHHHH
Q psy6612 225 HDIVESL 231 (291)
Q Consensus 225 ~~~~~~~ 231 (291)
+++++..
T Consensus 512 ~~if~~P 518 (534)
T COG4172 512 EAVFANP 518 (534)
T ss_pred HHHhcCC
Confidence 9887653
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.5e-45 Score=365.78 Aligned_cols=210 Identities=22% Similarity=0.329 Sum_probs=177.7
Q ss_pred cceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
+..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.+
T Consensus 332 ~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 332 KGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred CCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 346999999999975 5799999999999999999999999999999999999999999999999876 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHH-----HHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE-----ILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
+|++|++.+|+. |++||+.++.. ..++++..+.++. .+..+ |++. .......||||||||++|||||+.
T Consensus 412 ~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 412 ATVFQDAGLFNR-SIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred EEEccCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999975 99999987532 2233333332221 12222 2322 345567899999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+|++|||||||++||+.+++.+.+.|.++. +++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC
Confidence 999999999999999999999999999885 47999999999999978999999999999999998877543
No 300
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1e-45 Score=368.54 Aligned_cols=206 Identities=24% Similarity=0.369 Sum_probs=177.2
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
...++++|++++|.+ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 328 ~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 328 RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred CCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 346999999999964 6799999999999999999999999999999999999999999999999886 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCCc----CcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKIV----GALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~----~~LSgGqkQrv~iA 153 (291)
++|+||++.+|+. |++||+.++.. ...++ +++.++++.+++++ .+..+ ..||||||||++||
T Consensus 408 i~~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLA 481 (571)
T TIGR02203 408 VALVSQDVVLFND-TIANNIAYGRT-EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA 481 (571)
T ss_pred ceEEccCcccccc-cHHHHHhcCCC-CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence 9999999999987 99999986531 01222 34555555555421 23333 46999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||++.+|+++|||||||+||+.+.+.+++.|.++. +++|+|++||+.+.+..||+|++|++|++++.|+++++.+
T Consensus 482 Rall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 482 RALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999985 4699999999999988899999999999999999988754
No 301
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-46 Score=334.18 Aligned_cols=198 Identities=28% Similarity=0.477 Sum_probs=177.4
Q ss_pred EEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeEEEEcC
Q psy6612 25 AYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDIGYMPQ 91 (291)
Q Consensus 25 l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ig~v~q 91 (291)
+.+++|+. +| +++|+.+.-.++||.|+||||||||+|+|+|+.+|+.|.|.++|+.+ ++||||||
T Consensus 6 ~~~~lG~~-~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 6 FRQRLGNF-AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred hhhhcCce-EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 44555543 44 58999998679999999999999999999999999999999999764 57999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
+..|||.+||+.|+.|+.+.. .....+++.+.+|+.+ .+++|..|||||||||+|+|||+.+|++|+||||.+
T Consensus 84 DARLFpH~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLa 157 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLA 157 (352)
T ss_pred ccccccceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchh
Confidence 999999999999999876532 2345677889999987 799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+||..-+++++-+|.+++++ +.-|+.|||.++++.+ ||++++|++|++.+.|..+++...
T Consensus 158 SLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 158 SLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 99999999999999999865 7899999999999987 999999999999999998887654
No 302
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.2e-45 Score=328.37 Aligned_cols=178 Identities=27% Similarity=0.396 Sum_probs=153.7
Q ss_pred eEeeeeEEEe-----CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 34 VLKGLNLNVP-----ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 34 ~L~~vsl~i~-----~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
.+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++|++..++.+|+.||+.+.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---~i~~~~q~~~~~~~~tv~e~l~~~ 85 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---TVSYKPQYIKADYEGTVRDLLSSI 85 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---eEEEecccccCCCCCCHHHHHHHH
Confidence 4555666665 79999999999999999999999999999999999985 699999999877788999998754
Q ss_pred ccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 109 GYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
...... ....+.++++.+++.. .++++.+|||||||||+|||||+.+|+++||||||++||+.++..+.++|+++
T Consensus 86 ~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 161 (246)
T cd03237 86 TKDFYT----HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRF 161 (246)
T ss_pred hhhccc----cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 321111 1234567889999975 68899999999999999999999999999999999999999999999999999
Q ss_pred Hh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 188 AL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 188 ~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
++ .|+|||++|||++++.. ||++++|+++..
T Consensus 162 ~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 162 AENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 75 48999999999999976 999999976543
No 303
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.4e-45 Score=339.78 Aligned_cols=214 Identities=24% Similarity=0.365 Sum_probs=191.3
Q ss_pred cceEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec----
Q psy6612 17 KHSVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI---- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~---- 83 (291)
.+.|+++|++..|+ ...++++|||++++||.+||+|+||||||-..+.|+|+++. -+|+|.|+|+++
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 34688999999996 67899999999999999999999999999999999999864 379999999986
Q ss_pred ---------CeEEEEcCCC--CCCCCCCHHHHHHHhccc-cCCChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhHH
Q psy6612 84 ---------SDIGYMPQEL--ALHGELSIRETFRYYGYM-FDMTDDQIETRSKEILKLLELPP----AKKIVGALSGGQQ 147 (291)
Q Consensus 84 ---------~~ig~v~q~~--~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqk 147 (291)
.+|+++||+| +|.|-.|+..-+.-...+ .+.+..+.+.++.++++.+|+.+ .+.+|++||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 3699999998 466767887766544333 46778888999999999999953 4789999999999
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 148 Qrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
|||+||.||+.+|++||.||||++||...+.+|+++|++|. +.|++++++|||+..++. ||||++|.+|++++.+..+
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~ 243 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTE 243 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHH
Confidence 99999999999999999999999999999999999999997 459999999999999987 9999999999999999988
Q ss_pred HHHHH
Q psy6612 226 DIVES 230 (291)
Q Consensus 226 ~~~~~ 230 (291)
.++..
T Consensus 244 ~lF~~ 248 (534)
T COG4172 244 TLFAA 248 (534)
T ss_pred HHhhC
Confidence 77664
No 304
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=9.6e-45 Score=362.12 Aligned_cols=204 Identities=26% Similarity=0.403 Sum_probs=175.4
Q ss_pred ceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 18 HSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 18 ~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
..++++|++++|.+ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 45899999999964 5799999999999999999999999999999999999999999999999876 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CC----CCcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AK----KIVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~----~~~~~LSgGqkQrv~iA 153 (291)
++|+||++.+|+. |++||+.++.. ..++ +++.++++.+++. . .+ .....||||||||++||
T Consensus 416 i~~~~Q~~~lf~~-Ti~~Ni~~~~~--~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~la 488 (576)
T TIGR02204 416 MALVPQDPVLFAA-SVMENIRYGRP--DATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIA 488 (576)
T ss_pred ceEEccCCccccc-cHHHHHhcCCC--CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHH
Confidence 9999999999986 99999987431 1222 2344445554432 1 12 23456999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||++++|++||||||||+||+.+++.+++.|+++. +++|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 489 Ral~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 489 RAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999999999999999999985 4799999999999988899999999999999999887654
No 305
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-45 Score=315.30 Aligned_cols=212 Identities=22% Similarity=0.374 Sum_probs=191.4
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC-Eec----------CeE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF-RQI----------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g-~~~----------~~i 86 (291)
..|++++++.+|++..||+++||++.+||.-+|||||||||||+|.+|+|..+|+.|+|+++| .++ ..|
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 457899999999999999999999999999999999999999999999999999999999999 565 248
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccc--------cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYM--------FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
|--||.|..|+++||+||+.+.... +.....+.+.+++++|...||.+ .++..+.||.||||++.|+..++
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~ 163 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA 163 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence 9999999999999999999875432 12223345678999999999976 78999999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++|++|++|||++|+-.....+..++|+.++. +.+|+++.|||++++. |++|-+|+.|.+.++|+.+++.++
T Consensus 164 Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 164 QDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred cCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 99999999999999999999999999999984 5799999999999977 999999999999999998877554
No 306
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=8.4e-45 Score=363.26 Aligned_cols=198 Identities=24% Similarity=0.313 Sum_probs=175.0
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
..+++++++++.|++. .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ .+++|+||++.++
T Consensus 338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----~~i~y~~Q~~~~~ 412 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----LKISYKPQYIKPD 412 (590)
T ss_pred ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----eeEEEecccccCC
Confidence 4579999999999875 4999999999999999999999999999999999999999999986 3699999999888
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
+.+||.||+.+....+ .. ...+.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+.
T Consensus 413 ~~~tv~e~l~~~~~~~--~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~ 487 (590)
T PRK13409 413 YDGTVEDLLRSITDDL--GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 487 (590)
T ss_pred CCCcHHHHHHHHhhhc--Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 8899999998642211 11 234678899999975 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 176 LSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 176 ~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
++..+.++|+++++ .|+|||++|||++++.. |||+++|++ ++...|...
T Consensus 488 ~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~~ 538 (590)
T PRK13409 488 QRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHAS 538 (590)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeecC
Confidence 99999999999975 48999999999999976 999999965 776666543
No 307
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.1e-44 Score=369.39 Aligned_cols=210 Identities=25% Similarity=0.407 Sum_probs=176.9
Q ss_pred cceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
...++++|++++|+ ++++|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|+++|.++ +.
T Consensus 453 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 453 RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 44699999999995 35799999999999999999999999999999999999999999999999987 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHH-----HHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-----EILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
++||+|++.+|+. |++||+.+... ..+.++..+.++ +.++.+ |++. ......+||||||||++|||||+
T Consensus 533 i~~v~q~~~lf~~-ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall 609 (694)
T TIGR01846 533 MGVVLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV 609 (694)
T ss_pred CeEEccCCeehhh-hHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999986 99999987432 223333322221 122222 2221 23345679999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+..||++++|++|+++++|+++++.+.
T Consensus 610 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 610 GNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence 9999999999999999999999999999985 57999999999999988999999999999999999887653
No 308
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.1e-44 Score=361.73 Aligned_cols=204 Identities=25% Similarity=0.383 Sum_probs=175.5
Q ss_pred ceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
..+++++++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.+
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 35889999999964 5799999999999999999999999999999999999999999999999986 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-----------C-CCCCcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-----------P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+|++|++.+|+. |++||+.++.. ..++++ +.++++..++. . .+.....||||||||++|||
T Consensus 392 ~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lAR 464 (569)
T PRK10789 392 AVVSQTPFLFSD-TVANNIALGRP--DATQQE----IEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIAR 464 (569)
T ss_pred EEEccCCeeccc-cHHHHHhcCCC--CCCHHH----HHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 999999999986 99999986532 122332 33334443331 1 23345679999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+++|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 465 all~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 465 ALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999985 5899999999999988899999999999999999887764
No 309
>KOG0055|consensus
Probab=100.00 E-value=1.4e-45 Score=381.07 Aligned_cols=210 Identities=30% Similarity=0.530 Sum_probs=178.4
Q ss_pred cccceEEEEeEEEEECCE---eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------
Q psy6612 15 EVKHSVAVTSAYKKIGNH---VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------- 83 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~---~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------- 83 (291)
.++..++++|++++|..+ ++|+++||.|++|+.++|+|||||||||++++|.+++.|++|+|.+||.++
T Consensus 346 ~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 346 SIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHH
Confidence 356679999999999754 699999999999999999999999999999999999999999999999987
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHH-----HHHHHcCCCC-CCCCc----CcCChhHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-----EILKLLELPP-AKKIV----GALSGGQQRRISF 152 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~-~~~~~----~~LSgGqkQrv~i 152 (291)
.+||.|+|+|.+|. .|++||+.|+.. +...++..+.++ +.+.. ++. .+..+ -+||||||||++|
T Consensus 426 r~~iglV~QePvlF~-~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge~g~qLSGGQKQRIAI 500 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFA-TTIRENIRYGKP--DATREEIEEAAKAANAHDFILK--LPDGYDTLVGERGVQLSGGQKQRIAI 500 (1228)
T ss_pred HhhcCeeeechhhhc-ccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHh--hHHhhcccccCCCCCCChHHHHHHHH
Confidence 46999999998887 499999987532 122333333321 11222 221 23333 3599999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+.+|++||||||||+||+++++.+.+.|.+.. .|+|.|+|+|+++.++.||++++|++|+|++.|+++++...
T Consensus 501 ARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 501 ARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred HHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhc
Confidence 999999999999999999999999999999999876 58899999999999999999999999999999999998764
No 310
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1e-44 Score=320.11 Aligned_cols=188 Identities=21% Similarity=0.216 Sum_probs=159.1
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE-ECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK-LSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+ .+.+.+.+++.+|+.||+.+....
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~----~~~~~~~l~~~ltv~enl~~~~~~ 76 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL----PLGANSFILPGLTGEENARMMASL 76 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee----ccccccccCCcCcHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999997 777543 233567788999999999886555
Q ss_pred cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 112 FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
++....+. ...+.+.++++. .++++++||+|||||++|||||+.+|+++||||||+++|+.++..+.+.+.+..+
T Consensus 77 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~- 152 (213)
T PRK15177 77 YGLDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ- 152 (213)
T ss_pred cCCCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-
Confidence 54443322 223445567765 6789999999999999999999999999999999999999999999998866443
Q ss_pred CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 191 GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 191 g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+.|+|++||+++++.. ||++++|++|+++..++.++..
T Consensus 153 ~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 153 QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 4689999999999975 9999999999999988877654
No 311
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-45 Score=322.11 Aligned_cols=211 Identities=26% Similarity=0.405 Sum_probs=182.3
Q ss_pred cccccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 13 ~~~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
+......|+++|++..|+++++|+|+|++|++||-++|+|||||||||||++++|..+|++|.+.+.|+.+
T Consensus 25 ~~~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 25 IEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CCCCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 33344679999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -CeEEEEcCC--CCCCCCCCHHHHHHHh--cc--ccC-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 -SDIGYMPQE--LALHGELSIRETFRYY--GY--MFD-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 -~~ig~v~q~--~~l~~~ltv~enl~~~--~~--~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAr 154 (291)
++||||... ..+.++.+++|.+.-+ .. .+. ...++...++..+++.+|+.. .+++..+||-||||||.|||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHH
Confidence 468998754 2344566788876421 11 122 334566778899999999976 79999999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC--CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN--GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~--g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
||+.+|++|||||||+|||..++..+.+.|.+++.. +.++|+|||+.+++-. .++++.+++|+++.+|.
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999843 6899999999999966 79999999999998763
No 312
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-44 Score=363.61 Aligned_cols=201 Identities=23% Similarity=0.366 Sum_probs=176.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC--C
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL--A 94 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~--~ 94 (291)
+.+|+++++++.|+++.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. .++||++|+. .
T Consensus 310 ~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~igy~~Q~~~~~ 387 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--IKLGYFAQHQLEF 387 (638)
T ss_pred CceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--EEEEEecCcchhh
Confidence 45899999999999999999999999999999999999999999999999999999999999643 3699999974 3
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
+.+..|+.+++... . .......+.++++.+++.. .++++++|||||||||+|||||+.+|++|||||||+||
T Consensus 388 l~~~~~~~~~~~~~---~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~L 461 (638)
T PRK10636 388 LRADESPLQHLARL---A---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL 461 (638)
T ss_pred CCccchHHHHHHHh---C---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 55667888776321 1 1223456788999999953 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHHH
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDIV 228 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~ 228 (291)
|+.++..+.+.|.++ .| |||+||||++++.. ||++++|++|+++ ..|+.++..
T Consensus 462 D~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 462 DLDMRQALTEALIDF--EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999998 34 99999999999976 9999999999997 778887764
No 313
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-45 Score=353.75 Aligned_cols=203 Identities=29% Similarity=0.459 Sum_probs=179.5
Q ss_pred eEEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 19 SVAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
.++++|++++|.+. ++|+|+||++++||.++|+|++|||||||+.+|+|.++|++|+|.++|.++ ..++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 68999999999775 599999999999999999999999999999999999999999999999876 2489
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCCc----CcCChhHHHHHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKIV----GALSGGQQRRISFAVS 155 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~----~~LSgGqkQrv~iAra 155 (291)
+++|.+.+|.. |+++|+.+... +.++ +.+.++++.+||++ .+..+ ..||||||||++|||+
T Consensus 416 vl~Qr~hlF~~-Tlr~NL~lA~~--~AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 416 VLTQRVHLFSG-TLRDNLRLANP--DASD----EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488 (573)
T ss_pred hhccchHHHHH-HHHHHHhhcCC--CCCH----HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence 99999999987 99999987532 2233 34556677777743 12233 4699999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++|.+++||||||.|||+.+.+++++.|.+.. +|+|+||+||++..++.||+|++|++|+++++|.+.++..
T Consensus 489 LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999999999999999876 4899999999999999999999999999999999988765
No 314
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.6e-44 Score=362.23 Aligned_cols=205 Identities=24% Similarity=0.314 Sum_probs=177.2
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC-CC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL-AL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~-~l 95 (291)
+.+|+++|+++.|+++++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+ |.++ .+||++|++ .+
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-~i~y~~q~~~~l 394 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-EVAYFDQHRAEL 394 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-EEEEEeCccccc
Confidence 44799999999999999999999999999999999999999999999999999999999999 5443 699999986 58
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
++.+||.||+.+........ .....+.++++.+++. . .++++++|||||||||+|||||+.+|++|||||||+|||
T Consensus 395 ~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 395 DPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472 (635)
T ss_pred CCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 88999999998643211111 1234577889999985 3 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEe-CCEEEE-EechhHHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMR-DDQYIG-RLVHHDIV 228 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~-~G~i~~-~~~~~~~~ 228 (291)
+.++..+.++|+++ +.|||+||||.+++.. ||++++|+ +|+++. .|..++..
T Consensus 473 ~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 473 VETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999887 3599999999999976 99999998 798864 56666553
No 315
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.5e-46 Score=310.76 Aligned_cols=195 Identities=24% Similarity=0.379 Sum_probs=175.2
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcC
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQ 91 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q 91 (291)
+++++.+.-++.++|+++||++.+||+.+|.||+|||||||+|+++.+++|++|+++|.|+++ .+|+|+.|
T Consensus 5 e~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q 84 (223)
T COG4619 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQ 84 (223)
T ss_pred HHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHc
Confidence 445565566788999999999999999999999999999999999999999999999999987 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
.|.||++ ||+||+.|+...++.. ..+.++..+++.+++.+ +++.+.+||||||||++|+|-|..-|++|+|||||
T Consensus 85 ~paLfg~-tVeDNlifP~~~r~rr--~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 85 TPALFGD-TVEDNLIFPWQIRNRR--PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred Ccccccc-chhhccccchHHhccC--CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999998 9999999876665422 23567778999999975 68999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHh-hhCeEEEEeCCEE
Q psy6612 170 VGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAK-GAHNIGLMRDDQY 218 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~-~~d~i~~l~~G~i 218 (291)
|+||+.+++.+-++|.++. ++..+++.+|||.+++- .+|+++-+..|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999999999997 67899999999999975 4999999998854
No 316
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.3e-45 Score=326.28 Aligned_cols=199 Identities=29% Similarity=0.444 Sum_probs=181.7
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc-CCCCCCCCCCHH
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP-QELALHGELSIR 102 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~-q~~~l~~~ltv~ 102 (291)
..+++|+||+|++|+++|++|||||||||++|+++|++.|++|.|.++|.+. +++++|+ |...+.+.+.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 3589999999999999999999999999999999999999999999999865 4588876 445677777888
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHH
Q psy6612 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181 (291)
Q Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~ 181 (291)
+-+.....+|..+.+..+++.+.+.+.++++. .+.+++.||-|||.|+.||.||+++|+||+|||||-|||..++..+.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 88877777788888888999999999999976 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 182 DRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 182 ~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+.++++. +++.||+++||+++.+.. ||||+.|++|+++.+|+..++.+.
T Consensus 197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred HHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 9999997 458999999999999976 999999999999999998776654
No 317
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-44 Score=359.56 Aligned_cols=204 Identities=22% Similarity=0.265 Sum_probs=170.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
||+++|++++||++.+|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.++|. ..++|++|++..+.
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~--~~i~~~~q~~~~~~- 77 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN--WQLAWVNQETPALP- 77 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCCCCCC-
Confidence 578999999999999999999999999999999999999999999999999999999999885 35899999754332
Q ss_pred CCHHHHHHHhc-----------------------ccc----CCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHH
Q psy6612 99 LSIRETFRYYG-----------------------YMF----DMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRR 149 (291)
Q Consensus 99 ltv~enl~~~~-----------------------~~~----~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQr 149 (291)
.|+.+++.-.. ... .....+...++.++++.+|+. . .++++++||||||||
T Consensus 78 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 78 QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMR 157 (638)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHH
Confidence 46655542100 000 001112345778899999996 3 689999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~ 227 (291)
|+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||.+++.. ||++++|++|+++ ..|..+..
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 99999999999999999999999999999999999886 4699999999999976 9999999999996 45665544
Q ss_pred H
Q psy6612 228 V 228 (291)
Q Consensus 228 ~ 228 (291)
.
T Consensus 235 ~ 235 (638)
T PRK10636 235 E 235 (638)
T ss_pred H
Confidence 3
No 318
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=5.7e-44 Score=359.72 Aligned_cols=200 Identities=31% Similarity=0.432 Sum_probs=179.0
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECCEec------CeEEEEcCCCCCCCCCC
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQI------SDIGYMPQELALHGELS 100 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~------~~ig~v~q~~~l~~~lt 100 (291)
+++++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++|.++ +.+||++|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4678999999999999999999999999999999999999885 79999999886 35899999999999999
Q ss_pred HHHHHHHhcccc---CCChHHHHHHHHHHHHHcCCCC-CCCCcC------cCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 101 IRETFRYYGYMF---DMTDDQIETRSKEILKLLELPP-AKKIVG------ALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 101 v~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~~------~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
|+||+.|..... ..+.++.+++++++++.+|+.+ .+++++ .|||||||||+|||||+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 999999876543 2334556678899999999975 677776 499999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHh-HH-hhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIE-EA-KGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~-~~-~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.++..+++.|++++++|+|||+++|+++ ++ ..||++++|++|+++..|++++..+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 99999999999999999877999999999995 55 4599999999999999999887654
No 319
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.1e-44 Score=324.61 Aligned_cols=192 Identities=20% Similarity=0.302 Sum_probs=165.9
Q ss_pred EeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEecC------
Q psy6612 23 TSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK-----------LSFRQIS------ 84 (291)
Q Consensus 23 ~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-----------~~g~~~~------ 84 (291)
.+++++|+.+ .+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|+ ++|.++.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4688999765 59999995 999999999999999999999999999999999996 7786641
Q ss_pred -----eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 85 -----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 85 -----~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
.++|++|...+++. ++.+++.+.. .....+..+.++++.+++.. .++++.+||+|||||++|||||+.
T Consensus 83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR 156 (255)
T ss_pred hhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 37899999888874 7888876532 12233456788999999976 688999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEe
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~ 222 (291)
+|+++||||||++||+.++..+.+.|++++++++|||++||+++++.. ||++++|+ |++.+.|
T Consensus 157 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 157 DADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999998778999999999999976 99999995 5565443
No 320
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.7e-44 Score=385.59 Aligned_cols=206 Identities=27% Similarity=0.409 Sum_probs=177.0
Q ss_pred cceEEEEeEEEEEC---CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC----------------------
Q psy6612 17 KHSVAVTSAYKKIG---NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL---------------------- 71 (291)
Q Consensus 17 ~~~l~~~~l~~~~~---~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p---------------------- 71 (291)
+..|+++|++++|. +.++|+|+||+|++|+.+||+||||||||||+++|+|+++|
T Consensus 1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred CceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 34699999999995 35799999999999999999999999999999999999998
Q ss_pred --------------------------------CccEEEECCEec---------CeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 72 --------------------------------DAGTIKLSFRQI---------SDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 72 --------------------------------~~G~I~~~g~~~---------~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
++|+|+++|.++ +.||||+|+|.+|+. |++|||.++..
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~ 1321 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC
Confidence 699999999987 359999999999975 99999998632
Q ss_pred ccCCChHHHHHHHHHHHHHcCC-------CC-CCCCc----CcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHH
Q psy6612 111 MFDMTDDQIETRSKEILKLLEL-------PP-AKKIV----GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l-------~~-~~~~~----~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~ 178 (291)
..+.++ +.++++..++ +. .+..+ ..||||||||++|||||+++|++||||||||+||+.+.+
T Consensus 1322 --~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~ 1395 (1466)
T PTZ00265 1322 --DATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK 1395 (1466)
T ss_pred --CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence 223333 4444444443 22 34444 469999999999999999999999999999999999999
Q ss_pred HHHHHHHHhH-hCCcEEEEEccCHhHHhhhCeEEEEeC----CEEE-EEechhHHHH
Q psy6612 179 IIWDRLKEMA-LNGKTIIITTHYIEEAKGAHNIGLMRD----DQYI-GRLVHHDIVE 229 (291)
Q Consensus 179 ~i~~~l~~l~-~~g~tii~~tHd~~~~~~~d~i~~l~~----G~i~-~~~~~~~~~~ 229 (291)
.+.+.|.++. .+++|+|+|||+++.++.||+|++|++ |+++ ++|+++++..
T Consensus 1396 ~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1396 LIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9999999986 358999999999999999999999999 8855 8999988764
No 321
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-43 Score=352.98 Aligned_cols=193 Identities=20% Similarity=0.226 Sum_probs=167.7
Q ss_pred ceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 18 HSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
..++++|++++|++ .++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++ +.++
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence 36899999999964 5799999999999999999999999999999999999999999999999986 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCC-----cCcCChhHHHHHHHHHHHhcCCC
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKI-----VGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~-----~~~LSgGqkQrv~iAral~~~p~ 161 (291)
|++|++.+|+. |+++| . . ....+.+.++++.+++.. .+.. -.+||||||||++||||++++|+
T Consensus 401 ~v~q~~~lf~~-ti~~n---~---~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ 469 (547)
T PRK10522 401 AVFTDFHLFDQ-LLGPE---G---K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERD 469 (547)
T ss_pred EEecChhHHHH-hhccc---c---C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999886 78777 1 0 122345677888888753 2211 34799999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
+||||||||+||+.+++.+.+.+.+.. +.++|+|++||+++.+..||++++|++|++++.
T Consensus 470 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 470 ILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999998764 358999999999988888999999999999865
No 322
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2e-43 Score=381.03 Aligned_cols=209 Identities=28% Similarity=0.420 Sum_probs=186.5
Q ss_pred ceEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC---CCccEEEECCEec-----Ce
Q psy6612 18 HSVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT---LDAGTIKLSFRQI-----SD 85 (291)
Q Consensus 18 ~~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~-----~~ 85 (291)
.+++++|+++.|+ ++.+|+|||+++++||++||+|||||||||||++|+|+.+ |++|+|.++|+++ +.
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3688999999994 4689999999999999999999999999999999999997 7899999999886 45
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccC---CChHHHHHHHHHHHHHcCCCC-CCCCcC----cCChhHHHHHHHHHHHh
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFD---MTDDQIETRSKEILKLLELPP-AKKIVG----ALSGGQQRRISFAVSLL 157 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~----~LSgGqkQrv~iAral~ 157 (291)
+||++|++.+++.+||+||+.+...++. .++++..++++++++.+++.+ .++.++ .||||||||++||+||+
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 9999999988999999999998755432 334455677899999999976 677777 79999999999999999
Q ss_pred cCCC-EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH--hhhCeEEEEeCC-EEEEEechhH
Q psy6612 158 HNPK-LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA--KGAHNIGLMRDD-QYIGRLVHHD 226 (291)
Q Consensus 158 ~~p~-llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~--~~~d~i~~l~~G-~i~~~~~~~~ 226 (291)
.+|+ +|+|||||+|||+.++..+++.|++++++|+|||++||+++.. ..||++++|++| +++..|++.+
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9997 9999999999999999999999999987899999999999874 459999999997 9999998754
No 323
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.7e-43 Score=294.36 Aligned_cols=143 Identities=35% Similarity=0.517 Sum_probs=135.6
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGEL 99 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~l 99 (291)
+++++++++|++.++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+ ..++|+||
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~-------- 70 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQ-------- 70 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEcc--------
Confidence 46799999998888999999999999999999999999999999999999999999999996 46999998
Q ss_pred CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHH
Q psy6612 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179 (291)
Q Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~ 179 (291)
||+||+||++|||||+.+|+++||||||++||+.++..
T Consensus 71 ------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~ 108 (144)
T cd03221 71 ------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEA 108 (144)
T ss_pred ------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 180 IWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 180 i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
+.+.|+++ +.|+|++||+++++.. ||++++|++|+
T Consensus 109 l~~~l~~~---~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 109 LEEALKEY---PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999987 4699999999999966 99999999885
No 324
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1e-43 Score=351.64 Aligned_cols=187 Identities=29% Similarity=0.460 Sum_probs=161.7
Q ss_pred eEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 19 SVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
.++++|++++|++ +++|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 6899999999975 4799999999999999999999999999999999999999999999999986 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CC----CCcCcCChhHHHHHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AK----KIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~----~~~~~LSgGqkQrv~iAra 155 (291)
|++|++.+|+. |++||+.++.. ..++ +.+.++++..++.+ .+ ....+||||||||++||||
T Consensus 400 ~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 400 WVPQHPFLFAG-TIAENIRLARP--DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred EEcCCCcccCc-CHHHHHhccCC--CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 99999999985 99999987532 1222 23445555555421 22 2345799999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM 213 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l 213 (291)
|+++|+++|||||||+||+.+.+.+.+.|.++. +++|+|++||+++.++.||++++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999985 579999999999999889999875
No 325
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.5e-43 Score=352.84 Aligned_cols=194 Identities=23% Similarity=0.325 Sum_probs=167.7
Q ss_pred ceEEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 46899999999975 2599999999999999999999999999999999999999999999999987
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCC------CcCcCChhHHHHHHHHHHH
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKK------IVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~------~~~~LSgGqkQrv~iAral 156 (291)
+.++|++|++.+|.. |+++|.. .+..++++.++++.+++.+ .++ ....||||||||++||||+
T Consensus 416 ~~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 416 DLFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW 485 (555)
T ss_pred hhCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH
Confidence 348999999999986 7888731 1122345677888888753 221 2367999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHH-HhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLK-EMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~-~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
+.+|++|||||||++||+.+++.+.+.+. .++.+++|+|++||+++.+..||+|++|++|++++.
T Consensus 486 l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998664 455568999999999998888999999999999865
No 326
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4e-43 Score=354.63 Aligned_cols=203 Identities=24% Similarity=0.292 Sum_probs=169.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
||++++++++|+++++|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.++|. ..++|++|.+.....
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~--~~~~~l~q~~~~~~~ 80 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD--LIVARLQQDPPRNVE 80 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC--CEEEEeccCCCCCCC
Confidence 688999999999999999999999999999999999999999999999999999999999874 347899987644333
Q ss_pred CCHHHHHHHh------------------------------ccc----cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCCh
Q psy6612 99 LSIRETFRYY------------------------------GYM----FDMTDDQIETRSKEILKLLELPPAKKIVGALSG 144 (291)
Q Consensus 99 ltv~enl~~~------------------------------~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg 144 (291)
.++.+++... ... ..........++.++++.+|+. .++++++|||
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSg 159 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSG 159 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCH
Confidence 4666654210 000 0000112345678889999986 4789999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEE-Ee
Q psy6612 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG-RL 222 (291)
Q Consensus 145 GqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~-~~ 222 (291)
||||||+|||||+.+|++|||||||++||+.++..+.++|+++. .|||+||||.+++.. ||++++|++|+++. .|
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g 236 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFIRNMATRIVDLDRGKLVSYPG 236 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999883 599999999999976 99999999999974 57
Q ss_pred chhHH
Q psy6612 223 VHHDI 227 (291)
Q Consensus 223 ~~~~~ 227 (291)
..+..
T Consensus 237 ~~~~~ 241 (635)
T PRK11147 237 NYDQY 241 (635)
T ss_pred CHHHH
Confidence 66554
No 327
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-43 Score=382.81 Aligned_cols=206 Identities=21% Similarity=0.316 Sum_probs=178.7
Q ss_pred ccceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 16 VKHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
.+..|+++|++++|++ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++ +
T Consensus 1231 ~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1231 SRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred CCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHh
Confidence 3446999999999953 5799999999999999999999999999999999999999999999999987 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCC----cCcCChhHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKI----VGALSGGQQRRISF 152 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~----~~~LSgGqkQrv~i 152 (291)
+++||||+|.+|+. |++||+.++. ..+++ .+.++++..++.+ .+.. -.+||||||||++|
T Consensus 1311 ~i~iVpQdp~LF~g-TIr~NL~~~~---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaL 1382 (1495)
T PLN03232 1311 VLSIIPQSPVLFSG-TVRFNIDPFS---EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382 (1495)
T ss_pred hcEEECCCCeeeCc-cHHHHcCCCC---CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHH
Confidence 59999999999997 9999997642 22333 3444555554421 2333 34799999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+++|++||||||||+||+.+.+.+.+.|++.. +++|+|+|+|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 1383 ARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1383 ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999875 47999999999999999999999999999999999988753
No 328
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-43 Score=385.94 Aligned_cols=204 Identities=23% Similarity=0.342 Sum_probs=178.4
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+..|+++|++++|.+ .++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++ ++
T Consensus 1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred CCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence 456999999999964 4799999999999999999999999999999999999999999999999987 45
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~iA 153 (291)
|++|||+|.+|.. |++||+.++. ..+++ .+.++++..++. . .+..+ .+||||||||++||
T Consensus 1315 IsiVpQdp~LF~G-TIreNLd~~~---~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLA 1386 (1622)
T PLN03130 1315 LGIIPQAPVLFSG-TVRFNLDPFN---EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLA 1386 (1622)
T ss_pred cEEECCCCccccc-cHHHHhCcCC---CCCHH----HHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHH
Confidence 9999999999997 9999997643 22333 344455554442 1 23333 47999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+++|++||||||||+||+.+.+.+.+.|++.. +++|+|+|+|+++.+..||+|++|++|++++.|+++++.+
T Consensus 1387 RALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1387 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999975 4799999999999999999999999999999999998865
No 329
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.8e-43 Score=380.80 Aligned_cols=197 Identities=26% Similarity=0.422 Sum_probs=166.5
Q ss_pred eEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE-CCEec---------Ce
Q psy6612 19 SVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-SFRQI---------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~-~g~~~---------~~ 85 (291)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++ +.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 5899999999974 36999999999999999999999999999999999999999999999 45655 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhcccc----------CC-----------------------------------------
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMF----------DM----------------------------------------- 114 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~----------~~----------------------------------------- 114 (291)
||||+|++.+|+. |++||+.++.... +.
T Consensus 462 Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 462 IGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred ccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 9999999999985 9999998853100 00
Q ss_pred ChHHHHHHHHHHHHHcCCCC------------CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHH
Q psy6612 115 TDDQIETRSKEILKLLELPP------------AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182 (291)
Q Consensus 115 ~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~ 182 (291)
......+.+.++++.+++++ ......+||||||||++|||||+++|++|||||||++||+.++..+.+
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~ 620 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 00011234556666665531 135567899999999999999999999999999999999999999999
Q ss_pred HHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCC
Q psy6612 183 RLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDD 216 (291)
Q Consensus 183 ~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G 216 (291)
.|+++++ +|+|+|++||+++.+..||+|++|++|
T Consensus 621 ~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 621 TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 9999975 589999999999999779999999986
No 330
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.6e-43 Score=348.80 Aligned_cols=176 Identities=29% Similarity=0.440 Sum_probs=151.8
Q ss_pred ceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC--------eEEE
Q psy6612 18 HSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------DIGY 88 (291)
Q Consensus 18 ~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--------~ig~ 88 (291)
..++++|++++|++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+++ .++|
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~ 412 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISV 412 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEE
Confidence 35899999999975 57999999999999999999999999999999999999999999999999874 7999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHHHHHHH
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRISFAVSL 156 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~iAral 156 (291)
|||++.+|+. |++||+.++.. ..++ +++.++++..+++ + .+..+ ..||||||||++|||||
T Consensus 413 V~Q~~~lF~~-TI~eNI~~g~~--~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 413 FAQDAHLFDT-TVRDNLRLGRP--DATD----EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL 485 (529)
T ss_pred EccCcccccc-cHHHHHhccCC--CCCH----HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence 9999999987 99999987531 1222 3445556655552 1 24443 45999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~ 201 (291)
+.+|++||||||||+||+++.+.+.+.|.++. +++|+|++||++
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999999999874 479999999984
No 331
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.3e-42 Score=298.52 Aligned_cols=146 Identities=25% Similarity=0.391 Sum_probs=135.7
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHH
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIR 102 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~ 102 (291)
.|++++|+++.+++++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|++|++.
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---PVYKPQYID-------- 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---EEEEcccCC--------
Confidence 5789999999999984 9999999999999999999999999999999999999999964 889988642
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHH
Q psy6612 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182 (291)
Q Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~ 182 (291)
||||||||++|||||+.+|+++||||||++||+.++..+.+
T Consensus 72 ---------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~ 112 (177)
T cd03222 72 ---------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAAR 112 (177)
T ss_pred ---------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred HHHHhHhCC-cEEEEEccCHhHHhh-hCeEEEEeCCEEE
Q psy6612 183 RLKEMALNG-KTIIITTHYIEEAKG-AHNIGLMRDDQYI 219 (291)
Q Consensus 183 ~l~~l~~~g-~tii~~tHd~~~~~~-~d~i~~l~~G~i~ 219 (291)
.|+++++++ .|||++||+++++.. ||++++|+++-.+
T Consensus 113 ~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 113 AIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred HHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999997664 899999999999976 9999999987554
No 332
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.7e-42 Score=351.43 Aligned_cols=199 Identities=23% Similarity=0.340 Sum_probs=168.8
Q ss_pred ceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 18 HSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 18 ~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
.+|+++++++.|+ ++.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..+||++|++.
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--~~igyv~Q~~~-- 582 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--VRMAVFSQHHV-- 582 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--eeEEEEecccc--
Confidence 5799999999996 457999999999999999999999999999999999999999999999764 46999999863
Q ss_pred CCCCHHHHHHHh-cccc-CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 97 GELSIRETFRYY-GYMF-DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 97 ~~ltv~enl~~~-~~~~-~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
+.+++.++..+. ...+ +.. .+.+.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 583 ~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~L 658 (718)
T PLN03073 583 DGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658 (718)
T ss_pred ccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 345565554322 1111 111 346778999999963 58899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHH
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDI 227 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~ 227 (291)
|+.++..+.+.|.++ .| |||++|||++++.. ||++++|++|+++ ..|+.++.
T Consensus 659 D~~s~~~l~~~L~~~--~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 659 DLDAVEALIQGLVLF--QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CHHHHHHHHHHHHHc--CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999998888775 34 99999999999976 9999999999998 56766554
No 333
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.1e-42 Score=378.55 Aligned_cols=207 Identities=20% Similarity=0.291 Sum_probs=180.0
Q ss_pred cccceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 15 EVKHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
..+..|+++|++++|.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++
T Consensus 1280 p~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR 1359 (1522)
T TIGR00957 1280 PPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLR 1359 (1522)
T ss_pred CCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHH
Confidence 34557999999999964 4799999999999999999999999999999999999999999999999987
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHH
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRIS 151 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~ 151 (291)
++++||||+|.+|++ |+++|+..+. ..+++ .+.++++.+++. . .+..+ ..||||||||++
T Consensus 1360 ~~i~iVpQdp~LF~g-TIr~NLdp~~---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~ 1431 (1522)
T TIGR00957 1360 FKITIIPQDPVLFSG-SLRMNLDPFS---QYSDE----EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC 1431 (1522)
T ss_pred hcCeEECCCCcccCc-cHHHHcCccc---CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHH
Confidence 359999999999998 9999997432 22333 344555555542 1 34444 469999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||+++|++||||||||+||+++...+.+.|++.. +++|+|+|+|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 1432 LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1432 LARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999875 47999999999999999999999999999999999988653
No 334
>KOG0055|consensus
Probab=100.00 E-value=7e-43 Score=361.16 Aligned_cols=210 Identities=29% Similarity=0.474 Sum_probs=181.5
Q ss_pred ccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 16 VKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
++.-++++|+++.|.. .++|+|+||++++|+.+||+||+||||||.+.+|-+++.|++|.|.+||.++
T Consensus 984 ~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred ceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 4456899999999964 5699999999999999999999999999999999999999999999999987
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH-HHH--cCCCC-CCCCcC----cCChhHHHHHHHHHH
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI-LKL--LELPP-AKKIVG----ALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~-l~~--~~l~~-~~~~~~----~LSgGqkQrv~iAra 155 (291)
+++|.|.|+|.||.. |++||+.|+.. ..+..++.+.++.+ +.. .+|++ .|.+++ +||||||||+|||||
T Consensus 1064 ~~i~lVsQEP~LF~~-TIrENI~YG~~--~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFNG-TIRENIAYGSE--EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HhcceeccCchhhcc-cHHHHHhccCC--CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 469999999999986 99999998721 23444433332211 111 13443 466665 799999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+++||++|||||.||+||.++.+.+.+.|.+.. .|+|.|+|.|.++.++.||.|+|+++|+|+++|+++++.+
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 999999999999999999999999999999986 5899999999999999999999999999999999998876
No 335
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.5e-42 Score=304.58 Aligned_cols=196 Identities=23% Similarity=0.380 Sum_probs=181.4
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcC-CCCCCCCCCHHHHHHHhc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-ELALHGELSIRETFRYYG 109 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q-~~~l~~~ltv~enl~~~~ 109 (291)
..++|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|+ ++++.. ...+.|.+|.+||+.+.+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~----v~~li~lg~Gf~pelTGreNi~l~~ 114 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK----VAPLIELGAGFDPELTGRENIYLRG 114 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce----EehhhhcccCCCcccchHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999997 443332 245667799999999999
Q ss_pred cccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH
Q psy6612 110 YMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 188 (291)
.+.++++++++++++++.++-.|.+ .++|++.+|.||+-|+++|.|...+|++||+||-.+.-|+..+++-.+.+.++.
T Consensus 115 ~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~ 194 (249)
T COG1134 115 LILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV 194 (249)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999966 799999999999999999999999999999999999999999999999999998
Q ss_pred hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 189 LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 189 ~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++++|||++|||++.++. ||++++|++|++...|+++++...
T Consensus 195 ~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred HcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 778999999999999977 999999999999999999988764
No 336
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2e-42 Score=376.42 Aligned_cols=203 Identities=21% Similarity=0.338 Sum_probs=178.0
Q ss_pred ceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
..|+++|++++|.+ .++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++ +.|
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 46999999999964 4599999999999999999999999999999999999999999999999987 459
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCCc----CcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKIV----GALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~----~~LSgGqkQrv~iAr 154 (291)
|||||+|.+|+. |+++|+..+. ..++ +.+.++++.+++.+ .+..+ .+||||||||++|||
T Consensus 1387 ~iVpQdp~LF~g-TIreNIdp~~---~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLAR 1458 (1560)
T PTZ00243 1387 SMIPQDPVLFDG-TVRQNVDPFL---EASS----AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458 (1560)
T ss_pred eEECCCCccccc-cHHHHhCccc---CCCH----HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHH
Confidence 999999999987 9999996432 2233 34556666666531 24344 469999999999999
Q ss_pred HHhcC-CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHN-PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~-p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+++ |++||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+..||+|++|++|++++.|+++++.+
T Consensus 1459 ALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1459 ALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred HHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99996 89999999999999999999999999875 4699999999999999999999999999999999999875
No 337
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-41 Score=297.77 Aligned_cols=213 Identities=25% Similarity=0.345 Sum_probs=189.9
Q ss_pred ceEEEEeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEECCEec----------C
Q psy6612 18 HSVAVTSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQI----------S 84 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~----------~ 84 (291)
.||+++|++.+.+++ .+|++|||+|++||+++|+||||||||||.++|+|.- ++++|+|.++|+++ .
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 478999999999985 9999999999999999999999999999999999985 67999999999998 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCC---hHHHHHHHHHHHHHcCCCC--CCCCcC-cCChhHHHHHHHHHHHhc
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMT---DDQIETRSKEILKLLELPP--AKKIVG-ALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~--~~~~~~-~LSgGqkQrv~iAral~~ 158 (291)
.|.+.||.|.-++..++.+++.......... ..+..+.+.+.++.++++. ++|.++ .+|||||+|..|+.+++.
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l 161 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL 161 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc
Confidence 4889999999999999999988654332111 2355677888999999975 688887 499999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
+|++.|||||-||||..+-+.+.+.+.++++.|.+++++||.-..+.. .|++.+|.+|+|+.+|.+ ++...+
T Consensus 162 ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~l 235 (251)
T COG0396 162 EPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEEL 235 (251)
T ss_pred CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHHH
Confidence 999999999999999999999999999999889999999999999976 599999999999999998 665543
No 338
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.3e-42 Score=350.22 Aligned_cols=193 Identities=22% Similarity=0.340 Sum_probs=164.7
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
..+++++|+++.|. ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.+++. +.++|+||++.+
T Consensus 449 ~~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~--~~i~~v~Q~~~l 526 (659)
T TIGR00954 449 DNGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAK--GKLFYVPQRPYM 526 (659)
T ss_pred CCeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCC--CcEEEECCCCCC
Confidence 45799999999994 568999999999999999999999999999999999999999999998763 579999999999
Q ss_pred CCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCCC-CCCC---------cCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 96 HGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELPP-AKKI---------VGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~-~~~~---------~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
++. |++||+.+........ .....+++.++++.+++++ .+++ .++||||||||++|||||+++|+++|
T Consensus 527 ~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 527 TLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred CCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 887 9999998753221110 1111345677888888864 3333 36899999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
|||||++||+.++..+.+.+++. |.|+|++||+++.+..||++++|+.
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999999999999999988763 7999999999999888999999963
No 339
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=8e-42 Score=368.56 Aligned_cols=208 Identities=25% Similarity=0.378 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEC-------------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEECCEec
Q psy6612 19 SVAVTSAYKKIG-------------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL--DAGTIKLSFRQI 83 (291)
Q Consensus 19 ~l~~~~l~~~~~-------------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~ 83 (291)
.++.+|+++... ++.+|+|+|+++++|++++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 478889888762 34799999999999999999999999999999999999763 789999999765
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHhcccc---CCChHHHHHHHHHHHHHcCCCC-CCCCc-----CcCChhHHH
Q psy6612 84 ------SDIGYMPQELALHGELSIRETFRYYGYMF---DMTDDQIETRSKEILKLLELPP-AKKIV-----GALSGGQQR 148 (291)
Q Consensus 84 ------~~ig~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkQ 148 (291)
+.+||++|++.+++.+||+||+.|...++ ..+.++..+.++++++.++|.+ .++.+ ..|||||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence 34899999999999999999999865433 2233445567889999999976 56665 589999999
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhH-H-hhhCeEEEEeC-CEEEEEechh
Q psy6612 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE-A-KGAHNIGLMRD-DQYIGRLVHH 225 (291)
Q Consensus 149 rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~-~-~~~d~i~~l~~-G~i~~~~~~~ 225 (291)
||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++. + ..||++++|++ |+++..|+..
T Consensus 1027 RvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1027 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 9999999999999999999999999999999999999998889999999999984 5 45999999996 8999999864
Q ss_pred H
Q psy6612 226 D 226 (291)
Q Consensus 226 ~ 226 (291)
+
T Consensus 1107 ~ 1107 (1470)
T PLN03140 1107 R 1107 (1470)
T ss_pred c
Confidence 3
No 340
>KOG0059|consensus
Probab=100.00 E-value=2.3e-42 Score=359.53 Aligned_cols=212 Identities=33% Similarity=0.579 Sum_probs=201.3
Q ss_pred ceEEEEeEEEEECCEe-eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----------eE
Q psy6612 18 HSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----------DI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~-~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----------~i 86 (291)
..+.+++++|.|+.+. |++++||.|++||+.|++|||||||||++++|+|..+|++|+++++|.++. .+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 5688999999998877 999999999999999999999999999999999999999999999998762 39
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
||+||...+.+.+|.+|++.+++++++++..+.++.++.+++.+++.+ ++++++.+|||+|+|+++|.|++.+|++++|
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~L 722 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILL 722 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEe
Confidence 999999999999999999999999999998899999999999999965 8999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|+||.+++.+++++.+++++|+.||++||.|++++. |||+.+|.+|++..-|+++++.+
T Consensus 723 DEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 723 DEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 99999999999999999999999877799999999999987 99999999999999999987654
No 341
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.9e-41 Score=368.11 Aligned_cols=204 Identities=24% Similarity=0.376 Sum_probs=178.3
Q ss_pred ccceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 16 VKHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
....|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|+|+++ ++|+|.+||.++ +
T Consensus 1214 ~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1214 SGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred CCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHh
Confidence 3457999999999964 689999999999999999999999999999999999997 799999999987 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCCcC----cCChhHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKIVG----ALSGGQQRRISF 152 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~----~LSgGqkQrv~i 152 (291)
+++|+||+|.+|+. |+++|+.... ..++ +.+.++++.+++.. .+..++ .||||||||++|
T Consensus 1293 ~is~IpQdp~LF~G-TIR~NLdp~~---~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~L 1364 (1490)
T TIGR01271 1293 AFGVIPQKVFIFSG-TFRKNLDPYE---QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCL 1364 (1490)
T ss_pred ceEEEeCCCccCcc-CHHHHhCccc---CCCH----HHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHH
Confidence 69999999999997 9999996432 1222 34556677666631 233343 699999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+++|+|||||||||+||+.+...+.+.|++.. +++|||++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1365 ARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999999999875 4699999999999999999999999999999999998874
No 342
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1e-41 Score=288.84 Aligned_cols=213 Identities=22% Similarity=0.316 Sum_probs=188.1
Q ss_pred ceEEEEeEEEEECC---------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----
Q psy6612 18 HSVAVTSAYKKIGN---------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~---------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----- 83 (291)
..|+++|++|.|.. ..+++.|||++++|+.+|++|.||||||||.|+|+|+++|++|+|.+||+.+
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 45678889998842 3599999999999999999999999999999999999999999999999876
Q ss_pred ----CeEEEEcCCCC--CCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCC--CCCCCcCcCChhHHHHHHHHH
Q psy6612 84 ----SDIGYMPQELA--LHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELP--PAKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ----~~ig~v~q~~~--l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~LSgGqkQrv~iAr 154 (291)
+.|-++||+|+ +.|.+.+.+.+..+.++. .+...+..+++-+-+..+|+- +++-++..||-||||||++||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 46999999985 567777777766655442 345566677888899999993 378899999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+.+|+++|.||..++||...+.++.+++.++.+ .|.+-|.|+.++..++. +|.|++|+.|++++.|++.++...
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~ 240 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcC
Confidence 99999999999999999999999999999999985 59999999999999988 999999999999999999888654
No 343
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.1e-41 Score=340.74 Aligned_cols=183 Identities=25% Similarity=0.377 Sum_probs=159.9
Q ss_pred EeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEec-------
Q psy6612 23 TSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK-----------LSFRQI------- 83 (291)
Q Consensus 23 ~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-----------~~g~~~------- 83 (291)
++++++||++ .+|++++ .+++|+++||+||||||||||+|+|+|+++|++|+|. ++|.++
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 3489999874 6999999 9999999999999999999999999999999999997 888764
Q ss_pred ----CeEEEEcCCCCCCCC---CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGE---LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~---ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAra 155 (291)
.++++.+|....++. .|+.|++.+. +...++.++++.+++.. .++++.+|||||||||+||+|
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAA 226 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 135666665444333 2999988631 23456788999999976 689999999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCC
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDD 216 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G 216 (291)
|+.+|++|||||||++||+.++..+.+.|+++++ |+|||++|||++++.. ||++++|.++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999987 9999999999999976 9999999863
No 344
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-41 Score=281.12 Aligned_cols=146 Identities=40% Similarity=0.659 Sum_probs=136.0
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCC
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQE 92 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~ 92 (291)
++++++.|.++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++ ..++|+||
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q- 80 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ- 80 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-
Confidence 57899999888999999999999999999999999999999999999999999999999864 23666666
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
||+||+||++||||++.+|++++|||||+||
T Consensus 81 -------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~l 111 (157)
T cd00267 81 -------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGL 111 (157)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
|+.++..+.+.|.++.+.+.|++++||+++++.. ||++++|++|+
T Consensus 112 D~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 112 DPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999987667899999999999987 79999999874
No 345
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.7e-41 Score=288.18 Aligned_cols=151 Identities=26% Similarity=0.349 Sum_probs=133.0
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCCCCCCCCCHHHHHH
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQELALHGELSIRETFR 106 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~~l~~~ltv~enl~ 106 (291)
.+++|+|+||++++|++++|+||||||||||||++. +++|++.++|... .+++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH---------------
Confidence 367999999999999999999999999999999985 3699999987621 13555554
Q ss_pred HhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcC--CCEEEEcccCCCCCHHHHHHHHH
Q psy6612 107 YYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHN--PKLLILDEPTVGLDPILSQIIWD 182 (291)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~--p~llllDEPtsgLD~~~~~~i~~ 182 (291)
.++++.+++.. .++++.+||+|||||++|||||+.+ |+++||||||++||+.++..+.+
T Consensus 68 -----------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~ 130 (176)
T cd03238 68 -----------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE 130 (176)
T ss_pred -----------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 24678888853 6889999999999999999999999 99999999999999999999999
Q ss_pred HHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCE
Q psy6612 183 RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217 (291)
Q Consensus 183 ~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~ 217 (291)
.|+++++.|.|||++||+++++..||++++|.+|.
T Consensus 131 ~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 131 VIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 99999877899999999999986799999997754
No 346
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=9.9e-41 Score=328.18 Aligned_cols=205 Identities=27% Similarity=0.355 Sum_probs=175.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCC
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHG 97 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~ 97 (291)
.+|+++++++.|+++++|+++||+|.+|+.+||||+||||||||||+|+|.+.|++|+|...+. .++||++|++.+.+
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--~~v~~l~Q~~~~~~ 79 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--LRVGYLSQEPPLDP 79 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--ceEEEeCCCCCcCC
Confidence 4688999999999999999999999999999999999999999999999999999999998653 46999999999999
Q ss_pred CCCHHHHHHHhccc-cC-----------------------------CChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHH
Q psy6612 98 ELSIRETFRYYGYM-FD-----------------------------MTDDQIETRSKEILKLLELPPAKKIVGALSGGQQ 147 (291)
Q Consensus 98 ~ltv~enl~~~~~~-~~-----------------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqk 147 (291)
..||.+.+.-...- +. +..-..+.++..++..+|+...++++++||||||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r 159 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWR 159 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHH
Confidence 99999987542110 00 0001123456677888888655899999999999
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechh
Q psy6612 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHH 225 (291)
Q Consensus 148 Qrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~ 225 (291)
.||+||+||+.+|++|||||||++||..+...+.+.|.++ .| |+|+||||-.++.. |++|+-+++|++. ..|..+
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 9999999999999999999999999999999999999986 46 99999999999977 9999999999875 455554
Q ss_pred HH
Q psy6612 226 DI 227 (291)
Q Consensus 226 ~~ 227 (291)
..
T Consensus 237 ~~ 238 (530)
T COG0488 237 SY 238 (530)
T ss_pred HH
Confidence 43
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7e-41 Score=361.42 Aligned_cols=199 Identities=19% Similarity=0.200 Sum_probs=171.6
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC----CCCccEEEECCEec--------CeEEEEcCCCCCCCC
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN----TLDAGTIKLSFRQI--------SDIGYMPQELALHGE 98 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~----~p~~G~I~~~g~~~--------~~ig~v~q~~~l~~~ 98 (291)
.+++|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.++|+++ +.++|++|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 367999999999999999999999999999999999996 57899999999865 249999999999999
Q ss_pred CCHHHHHHHhcccc-------CCChHHHHHH-HHHHHHHcCCCC-CCCC-----cCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 99 LSIRETFRYYGYMF-------DMTDDQIETR-SKEILKLLELPP-AKKI-----VGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 99 ltv~enl~~~~~~~-------~~~~~~~~~~-~~~~l~~~~l~~-~~~~-----~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
+||+||+.|....+ +.++++..++ ++++++.+||.+ .+++ ++.|||||||||+||+||+.+|++++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999865432 1223332333 466899999975 4544 56799999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCH-hHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYI-EEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~-~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+|||+.++..+.+.|+++++ .|+|||+++|++ +++.. +|++++|++|+++..|++++..+
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 9999999999999999999999986 489999999997 56655 99999999999999999877643
No 348
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-41 Score=291.20 Aligned_cols=207 Identities=25% Similarity=0.397 Sum_probs=174.5
Q ss_pred eEEEEeEEEEEC-----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------
Q psy6612 19 SVAVTSAYKKIG-----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------- 84 (291)
Q Consensus 19 ~l~~~~l~~~~~-----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--------- 84 (291)
|+.+.|+.+.|. .++||+++|++|++|+|+.++|.||||||||+++|+|-+.|++|+|.++|.++.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 345667777764 367999999999999999999999999999999999999999999999999983
Q ss_pred eEEEEcCCC--CCCCCCCHHHHHHHhccc---cCCCh---HHHHHHHHHHHHHcCC--CC-CCCCcCcCChhHHHHHHHH
Q psy6612 85 DIGYMPQEL--ALHGELSIRETFRYYGYM---FDMTD---DQIETRSKEILKLLEL--PP-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 85 ~ig~v~q~~--~l~~~ltv~enl~~~~~~---~~~~~---~~~~~~~~~~l~~~~l--~~-~~~~~~~LSgGqkQrv~iA 153 (291)
.++-|||+| ..++.||+.||+.++... ++... ...++...+.+..+++ +. .+.+++-|||||||-++++
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 378899998 579999999999875321 22222 2223344455666655 44 6889999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
.|-++.|++|+|||-|++|||.+...+++.-.++.+ .+.|.+||||+|+.+-. .+|.++|++|+|+.+..-+
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~ 234 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence 999999999999999999999999999999999975 47899999999999955 8999999999999876543
No 349
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-41 Score=283.69 Aligned_cols=210 Identities=27% Similarity=0.449 Sum_probs=178.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe---c----------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ---I---------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~---------- 83 (291)
++.|++.+++|.||.....+||||++.+||+.||+|++|||||||++||++-+.|++|+|.+.-++ .
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 456788999999999999999999999999999999999999999999999999999999985422 1
Q ss_pred -----CeEEEEcCCCC--CCCCCCHHHHHH-----HhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHH
Q psy6612 84 -----SDIGYMPQELA--LHGELSIRETFR-----YYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRR 149 (291)
Q Consensus 84 -----~~ig~v~q~~~--l~~~ltv~enl~-----~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQr 149 (291)
..-|+|-|+|. +-...+..-|+- .+.+.|+ .++..+.++++.+.++. .|..|..+|||||||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcccccchHHHHH
Confidence 24799999984 333334444442 2223332 35667888999999864 578899999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+.|||-|+..|+++++||||.|||...+..++++++.+. +-|.+++++|||+..+.. ++|..+|++|+++++|-.+.+
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccc
Confidence 999999999999999999999999999999999999997 459999999999999977 999999999999999877666
Q ss_pred HHH
Q psy6612 228 VES 230 (291)
Q Consensus 228 ~~~ 230 (291)
..+
T Consensus 240 LDD 242 (258)
T COG4107 240 LDD 242 (258)
T ss_pred ccC
Confidence 544
No 350
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-41 Score=286.20 Aligned_cols=184 Identities=26% Similarity=0.343 Sum_probs=166.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC--------eEEEEc
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------DIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--------~ig~v~ 90 (291)
+++.++++...+...++.++||++.+||++.|.||||||||||||+|+|+..|++|+|.|+|.++. .+-|+-
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 466789999999999999999999999999999999999999999999999999999999988762 356788
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
..+.+-+.+|++||+.|+..+++.. ....+.++++.+||.. .|.|+++||-|||+||+|||-++..++++||||||
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~---~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSG---NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCC---chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 8889999999999999988776631 1246778899999976 69999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
++||......+-.++..-+.+|..||++||+.--+.
T Consensus 159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 999999999999999998888889999999875553
No 351
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.9e-40 Score=316.07 Aligned_cols=209 Identities=25% Similarity=0.453 Sum_probs=178.0
Q ss_pred cccceEEEEeEEEEE--CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 15 EVKHSVAVTSAYKKI--GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~--~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
+.+..|.++++++-= ..+++++++||++.+||.+|||||||||||||.|+|.|..+|++|.|++||-++
T Consensus 330 ~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG 409 (580)
T COG4618 330 APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409 (580)
T ss_pred CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhc
Confidence 445578899988744 246899999999999999999999999999999999999999999999999877
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHc-------CCCC-CCCCcC----cCChhHHHHHH
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL-------ELPP-AKKIVG----ALSGGQQRRIS 151 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~-~~~~~~----~LSgGqkQrv~ 151 (291)
+.|||+||+-.||+. |+.|||.-+.. ..+.+ ++-++.+.- .++. .+..++ .||||||||++
T Consensus 410 ~hiGYLPQdVeLF~G-TIaeNIaRf~~--~~d~~----kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIa 482 (580)
T COG4618 410 RHIGYLPQDVELFDG-TIAENIARFGE--EADPE----KVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIA 482 (580)
T ss_pred cccCcCcccceecCC-cHHHHHHhccc--cCCHH----HHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHH
Confidence 569999999999998 99999964331 11111 222222222 2333 456664 59999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||..+|.+++||||-|+||......+.+.|.+.+++|.|+|++||.++.+..+|++.+|++|++..-|+.+++...
T Consensus 483 LARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 483 LARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998887664
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.3e-40 Score=356.47 Aligned_cols=203 Identities=23% Similarity=0.393 Sum_probs=170.5
Q ss_pred eEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 19 SVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 19 ~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
.++++|+++.|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----~i~yv~Q~~~l~ 711 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----SVAYVPQQAWIQ 711 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----EEEEEcCCcccc
Confidence 6999999999974 5799999999999999999999999999999999999999999999987 499999999887
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHH--HHHHHcCC-CC-----CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSK--EILKLLEL-PP-----AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~--~~l~~~~l-~~-----~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
+ .|++||+.++... ..+..++.++ .+.+.++. +. ...+..+||||||||++||||++.+|+++|||||
T Consensus 712 ~-~Ti~eNI~~g~~~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp 787 (1522)
T TIGR00957 712 N-DSLRENILFGKAL---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 787 (1522)
T ss_pred C-CcHHHHhhcCCcc---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6 5999999875321 2222221111 11222222 11 2456778999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhH--hCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMA--LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~--~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++||+.+.+.+++.+.+.. .+++|+|++||+++.+..||++++|++|+++..|+++++.+
T Consensus 788 ~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 788 LSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred ccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 99999999999999997542 35799999999999998899999999999999999888764
No 353
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.3e-40 Score=356.22 Aligned_cols=198 Identities=20% Similarity=0.386 Sum_probs=169.3
Q ss_pred eEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc-cEEEECCEecCeEEEEcCCCC
Q psy6612 19 SVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA-GTIKLSFRQISDIGYMPQELA 94 (291)
Q Consensus 19 ~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~-G~I~~~g~~~~~ig~v~q~~~ 94 (291)
.++++|++++|+. +++|+|+||+|++|+.++|+||+|||||||+++|+|.++|++ |+|.+.+ .|+||+|+|.
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~----~Iayv~Q~p~ 689 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG----TVAYVPQVSW 689 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC----eEEEEcCccc
Confidence 5899999999963 579999999999999999999999999999999999999999 9999865 5999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHHHHHHHhcCCCE
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~iAral~~~p~l 162 (291)
+++. |++|||.|+.. .+ +++..++++.+++. . .+..+ ..||||||||++||||+..+|++
T Consensus 690 Lfng-TIreNI~fg~~---~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I 761 (1622)
T PLN03130 690 IFNA-TVRDNILFGSP---FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761 (1622)
T ss_pred cCCC-CHHHHHhCCCc---cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 9986 99999998642 12 23445555555542 1 23334 35999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHH-HHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWD-RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+||+++.+.+.+ .+..+. +++|+|++||+++.+..||+|++|++|++++.|+.+++.+
T Consensus 762 lLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 762 YIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred EEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999888764 566554 5799999999999988899999999999999999988764
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.6e-40 Score=354.95 Aligned_cols=203 Identities=23% Similarity=0.328 Sum_probs=174.1
Q ss_pred EEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECCEec------CeEEEEcCCCCCC
Q psy6612 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQI------SDIGYMPQELALH 96 (291)
Q Consensus 26 ~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~------~~ig~v~q~~~l~ 96 (291)
++++ ++.+|+|+|+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|.++ +.++|++|++.++
T Consensus 173 ~k~~-~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~ 251 (1470)
T PLN03140 173 AKKT-KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHV 251 (1470)
T ss_pred CCCc-cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCC
Confidence 3444 477999999999999999999999999999999999999998 99999999875 4599999999999
Q ss_pred CCCCHHHHHHHhccccCC----------ChHHH------------------------HHHHHHHHHHcCCCC-C-----C
Q psy6612 97 GELSIRETFRYYGYMFDM----------TDDQI------------------------ETRSKEILKLLELPP-A-----K 136 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~----------~~~~~------------------------~~~~~~~l~~~~l~~-~-----~ 136 (291)
+.+||+|++.|.....+. .+++. ...++++++.+||++ . +
T Consensus 252 ~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~ 331 (1470)
T PLN03140 252 GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD 331 (1470)
T ss_pred CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC
Confidence 999999999987544321 11110 113467899999964 3 5
Q ss_pred CCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCH-hHHhh-hCeEEEE
Q psy6612 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYI-EEAKG-AHNIGLM 213 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~-~~~~~-~d~i~~l 213 (291)
+.++.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++ .|+|||+++|++ +++.. ||++++|
T Consensus 332 ~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL 411 (1470)
T PLN03140 332 EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILL 411 (1470)
T ss_pred ccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEe
Confidence 56789999999999999999999999999999999999999999999999975 589999999996 46654 9999999
Q ss_pred eCCEEEEEechhHHHH
Q psy6612 214 RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 214 ~~G~i~~~~~~~~~~~ 229 (291)
++|+++..|+.++..+
T Consensus 412 ~~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 412 SEGQIVYQGPRDHILE 427 (1470)
T ss_pred eCceEEEeCCHHHHHH
Confidence 9999999999877654
No 355
>KOG0061|consensus
Probab=100.00 E-value=1.3e-39 Score=326.91 Aligned_cols=210 Identities=30% Similarity=0.484 Sum_probs=185.8
Q ss_pred EEEEeEEEEEC-----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC---CccEEEECCEec------Ce
Q psy6612 20 VAVTSAYKKIG-----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL---DAGTIKLSFRQI------SD 85 (291)
Q Consensus 20 l~~~~l~~~~~-----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p---~~G~I~~~g~~~------~~ 85 (291)
+..++++.... .+++|++||..+++||+.||+||+||||||||++|+|.... .+|+|.+||+.. +.
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~ 105 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI 105 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhe
Confidence 44556665552 37899999999999999999999999999999999999874 799999999654 45
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccC---CChHHHHHHHHHHHHHcCCCC-CCCCcC-----cCChhHHHHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFD---MTDDQIETRSKEILKLLELPP-AKKIVG-----ALSGGQQRRISFAVSL 156 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~-----~LSgGqkQrv~iAral 156 (291)
.|||.|+..+++.+||+|++.|.+.++- .+.++.+++++++++.+|+.. +|+.++ .+|||||+||+||.-|
T Consensus 106 s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El 185 (613)
T KOG0061|consen 106 SGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL 185 (613)
T ss_pred eEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHH
Confidence 8999999999999999999999876642 355778889999999999986 677776 5999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhH-H-hhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE-A-KGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~-~-~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+++|.+|+|||||+|||..+..++.+.|++++++|+|||++-|.+.. + ...|++++|.+|+++..|++++..+
T Consensus 186 l~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 186 LTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 99999999999999999999999999999999889999999999865 3 4499999999999999999876544
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.5e-40 Score=335.13 Aligned_cols=205 Identities=22% Similarity=0.255 Sum_probs=155.4
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC---CCCccEEEECCEec-----------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN---TLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~---~p~~G~I~~~g~~~----------- 83 (291)
.+|+++|++++|+++.+|+|+||+|++|+++||+||||||||||||+|+|.. .|++|+|.+.++.+
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v 255 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV 255 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence 3689999999999889999999999999999999999999999999999964 46677775433211
Q ss_pred ------------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChH-------------------HHHHHHHHHHHHcCC
Q psy6612 84 ------------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDD-------------------QIETRSKEILKLLEL 132 (291)
Q Consensus 84 ------------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~l 132 (291)
..++|++|++.+... ++.++.... ...+.+.+ ..+.++.+++..+|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 256 LNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGA-NKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc-cccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 002333333221110 111110000 00011111 234566677888888
Q ss_pred C-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCe
Q psy6612 133 P-P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHN 209 (291)
Q Consensus 133 ~-~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~ 209 (291)
. . .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||.+++.. ||+
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCE
Confidence 5 3 57899999999999999999999999999999999999999999999999887 6799999999999976 999
Q ss_pred EEEEeCCEEE-EEechhHH
Q psy6612 210 IGLMRDDQYI-GRLVHHDI 227 (291)
Q Consensus 210 i~~l~~G~i~-~~~~~~~~ 227 (291)
+++|++|++. ..|..+.+
T Consensus 411 i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 411 ILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEECCEEEEeCCCHHHH
Confidence 9999999996 56665543
No 357
>KOG0056|consensus
Probab=100.00 E-value=1.7e-40 Score=314.60 Aligned_cols=214 Identities=24% Similarity=0.440 Sum_probs=183.4
Q ss_pred cccccceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------
Q psy6612 13 IIEVKHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------- 83 (291)
Q Consensus 13 ~~~~~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------- 83 (291)
.-.-...++++|+++.|. ++++|+||||++.+|+.+||+||+|+||||++|++..+...++|.|++||+++
T Consensus 531 l~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred ccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 444456799999999996 58999999999999999999999999999999999999999999999999998
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH---HHHcCCCC-CCCCcC----cCChhHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI---LKLLELPP-AKKIVG----ALSGGQQRRISFAV 154 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~---l~~~~l~~-~~~~~~----~LSgGqkQrv~iAr 154 (291)
+.||.||||..+|++ |+..|+.|+.. ..+.++..+.+..+ -+.+++++ .+.+++ .|||||||||+|||
T Consensus 611 Rs~IGVVPQDtvLFNd-TI~yNIryak~--~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFND-TILYNIRYAKP--SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHhcCcccCcceeecc-eeeeheeecCC--CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 359999999999987 99999987532 22334433333222 12345544 355555 59999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+++.+|.+++|||.||+||..+.+.+...|.+++. +.|-|++.|.++.+-.||.|+++++|+|++.|.++++...
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 99999999999999999999999999999999984 6899999999999999999999999999999999988654
No 358
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-39 Score=354.74 Aligned_cols=198 Identities=20% Similarity=0.375 Sum_probs=166.6
Q ss_pred eEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE-ECCEecCeEEEEcCCCC
Q psy6612 19 SVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK-LSFRQISDIGYMPQELA 94 (291)
Q Consensus 19 ~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-~~g~~~~~ig~v~q~~~ 94 (291)
.++++|++++|++ +++|+|+||+|++||.++|+||+|||||||+++|+|.++|++|.+. +. ..|+||+|+|.
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~----~~Iayv~Q~p~ 689 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR----GSVAYVPQVSW 689 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEec----CcEEEEcCccc
Confidence 5899999999964 5799999999999999999999999999999999999999998663 32 46999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHHHHHHHhcCCCE
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~iAral~~~p~l 162 (291)
+|+. |++|||.|+.. .++ ++..++++.+++. + .+..+ ..||||||||++||||+..+|++
T Consensus 690 Lf~g-TIreNI~fg~~---~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 761 (1495)
T PLN03232 690 IFNA-TVRENILFGSD---FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI 761 (1495)
T ss_pred cccc-cHHHHhhcCCc---cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 9986 99999988642 222 2344455554442 1 23333 35999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHH-HHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDR-LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~-l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+||+++.+.+++. +..+. +++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 762 lLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 762 YIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999988765 55443 5799999999999988899999999999999999988764
No 359
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-40 Score=270.02 Aligned_cols=194 Identities=24% Similarity=0.389 Sum_probs=172.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECCEec-------CeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQI-------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~-------~~ig~ 88 (291)
|+.++|++.+.++...|-++||+|.+|||+-|+||+|||||||+.-+.|.+.++ +|+++++++++ +++|+
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 678899999999999999999999999999999999999999999999999875 89999999986 67999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
+||++-+||.++|++|+.|.... ..+.+..++.+..+++..|++. .++.|.+||||||-||++.|+|+.+|+.++|||
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE 160 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE 160 (213)
T ss_pred eecccccccccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC
Confidence 99999999999999999875322 2333455667888999999987 689999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHH-hHhCCcEEEEEccCHhHHhhhCeEEEE
Q psy6612 168 PTVGLDPILSQIIWDRLKE-MALNGKTIIITTHYIEEAKGAHNIGLM 213 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~-l~~~g~tii~~tHd~~~~~~~d~i~~l 213 (291)
|||.||..-+.++.+..-. .++.|...++||||.+.+....||+-|
T Consensus 161 PFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 161 PFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999998865 456699999999999988755566655
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=7.4e-39 Score=347.89 Aligned_cols=189 Identities=25% Similarity=0.338 Sum_probs=158.1
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.+++. |++||+.|+..
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----~iayv~Q~~~l~~~-Ti~eNI~~g~~- 512 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----RISFSPQTSWIMPG-TIKDNIIFGLS- 512 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----EEEEEeCCCccCCc-cHHHHHHhccc-
Confidence 4689999999999999999999999999999999999999999999998 49999999999886 99999997632
Q ss_pred cCCChHHHHHH-----HHHHHHHcCCC---CCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHH
Q psy6612 112 FDMTDDQIETR-----SKEILKLLELP---PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183 (291)
Q Consensus 112 ~~~~~~~~~~~-----~~~~l~~~~l~---~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~ 183 (291)
+ ......+. +.+.++.+... ....+..+||||||||++||||++.+|+++||||||++||+.+++.+++.
T Consensus 513 ~--~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~ 590 (1490)
T TIGR01271 513 Y--DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFES 590 (1490)
T ss_pred c--chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1 11111111 11222222211 12345778999999999999999999999999999999999999999985
Q ss_pred -HHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 184 -LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 184 -l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.++. +|+|+|++||+++.+..||++++|++|+++..|+++++..
T Consensus 591 ~l~~~~-~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 591 CLCKLM-SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHh-cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 56665 4899999999999998899999999999999999888754
No 361
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.1e-38 Score=284.20 Aligned_cols=186 Identities=22% Similarity=0.336 Sum_probs=138.0
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHH-HHHHcCCCCCccEEEEC-----------------C-Eec--CeEE
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL-NCIVGRNTLDAGTIKLS-----------------F-RQI--SDIG 87 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl-~~i~gl~~p~~G~I~~~-----------------g-~~~--~~ig 87 (291)
..+..+|+++||++++||++||+||||||||||+ .+|.. +|++.+. . ..+ ...+
T Consensus 5 ~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 5 GAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred cchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 3456799999999999999999999999999995 44431 2221110 0 001 1234
Q ss_pred EEcCCCC--CCCCCCHHH---HHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 88 YMPQELA--LHGELSIRE---TFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 88 ~v~q~~~--l~~~ltv~e---nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+..|++. +.+..++.. ...+...++. .....++ .++++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p 156 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLFA--RVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGL 156 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHhh--hhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCC
Confidence 4444432 234445442 2222211111 1222233 46789999964 58899999999999999999999998
Q ss_pred --CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEe
Q psy6612 161 --KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRL 222 (291)
Q Consensus 161 --~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~ 222 (291)
++|||||||+|||+.++..+.+.|++++++|.|||++|||++++..||++++| ++|+|+++|
T Consensus 157 ~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 157 TGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 59999999999999999999999999987799999999999998779999999 999998764
No 362
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.9e-38 Score=345.42 Aligned_cols=193 Identities=24% Similarity=0.373 Sum_probs=159.7
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+. ..|||++|++.+++ .|++||+.++
T Consensus 670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----~~i~yv~Q~~~l~~-~Tv~enI~~~ 744 (1560)
T PTZ00243 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----RSIAYVPQQAWIMN-ATVRGNILFF 744 (1560)
T ss_pred cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC----CeEEEEeCCCccCC-CcHHHHHHcC
Confidence 456789999999999999999999999999999999999999999999985 45999999998875 5999999875
Q ss_pred ccccCCChHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHH
Q psy6612 109 GYMFDMTDDQIET-----RSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180 (291)
Q Consensus 109 ~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i 180 (291)
... ..+...+ .+++.++.+ |+.. .+++..+||||||||++|||||+.+|+++||||||++||+..++.+
T Consensus 745 ~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i 821 (1560)
T PTZ00243 745 DEE---DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV 821 (1560)
T ss_pred Chh---hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 321 1111111 122334444 4432 4677899999999999999999999999999999999999999888
Q ss_pred HHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 181 WDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 181 ~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
++.+......|+|+|++||+++.+..||++++|++|+++.+|+.+++.+
T Consensus 822 ~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 822 VEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 8754322225899999999999998899999999999999999888764
No 363
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-38 Score=292.78 Aligned_cols=210 Identities=27% Similarity=0.474 Sum_probs=177.6
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
...+.+.++++.|+ .+++|+++||++++|+.++++||+|+||||+++++..++.+++|.|.++|+++ +.|
T Consensus 260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aI 339 (497)
T COG5265 260 LGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAI 339 (497)
T ss_pred cceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHh
Confidence 34578899999996 47899999999999999999999999999999999999999999999999987 349
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH--HHHcC-CCC-CCCCcC----cCChhHHHHHHHHHHHhc
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI--LKLLE-LPP-AKKIVG----ALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~--l~~~~-l~~-~~~~~~----~LSgGqkQrv~iAral~~ 158 (291)
|.|||+..||.+ |.+.|+.|+..- ...++....++.+ -+.+. +++ .+..++ .|||||||||+|||+++.
T Consensus 340 g~VPQDtvLFND-ti~yni~ygr~~--at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 340 GIVPQDTVLFND-TIAYNIKYGRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred CcCcccceehhh-hHHHHHhccCcc--ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 999999999987 999999876432 2233322222211 11111 222 455555 499999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+|++|+|||.||+||..+.+++...|++.. .|.|-+++.|.++.+..||.|++|++|+|++.|.++++...
T Consensus 417 ~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 999999999999999999999999999987 57899999999999999999999999999999999887653
No 364
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-38 Score=262.14 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=176.6
Q ss_pred ceEEEEeEEEEE-----CC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE--ec-----
Q psy6612 18 HSVAVTSAYKKI-----GN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR--QI----- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~-----~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~--~~----- 83 (291)
..|.+++++|+| ++ -++++++||+++.||+++|=||+|||||||||++-|-+.|++|+|++.-. -+
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 457788999988 23 47999999999999999999999999999999999999999999998432 11
Q ss_pred ----------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHH
Q psy6612 84 ----------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRIS 151 (291)
Q Consensus 84 ----------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~ 151 (291)
+.||||.|-....|..+..|.++-+..-.+.+.+..+.++..++.+++++. .+-.|..+||||||||.
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 349999999888898898888887766678888888899999999999975 57889999999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
|||.++.+-++|+|||||++||..++..+.++|.+-+..|.+++=+-||-+.-+. |||++-|..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999998889999999999776666 999988853
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=299.30 Aligned_cols=200 Identities=28% Similarity=0.340 Sum_probs=172.5
Q ss_pred ccceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC-
Q psy6612 16 VKHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL- 93 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~- 93 (291)
-+.+++++|+++.|++ +.+++++||.|.+|+.+||+||||||||||||+|+|...|.+|+|.+.- . -++||+.|+.
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-~-v~igyf~Q~~~ 395 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-T-VKIGYFDQHRD 395 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-c-eEEEEEEehhh
Confidence 3668999999999966 6999999999999999999999999999999999999999999999843 3 4699999997
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
.+.+..|+.|++.-... ...+..+..+|..|++.. ..++++.||||||-|+.+|+.++.+|.+|||||||+.
T Consensus 396 ~l~~~~t~~d~l~~~~~------~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNh 469 (530)
T COG0488 396 ELDPDKTVLEELSEGFP------DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNH 469 (530)
T ss_pred hcCccCcHHHHHHhhCc------cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCcc
Confidence 45577799998864321 111457888999999964 5799999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE-echhHH
Q psy6612 172 LDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR-LVHHDI 227 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~-~~~~~~ 227 (291)
||..+...+.+.|.++. .|||+||||-.++.. |++++.+.+ ++... |..++.
T Consensus 470 LDi~s~~aLe~aL~~f~---Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 470 LDIESLEALEEALLDFE---GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred CCHHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 99999999999999983 599999999999987 999999998 55433 555444
No 366
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.1e-35 Score=269.98 Aligned_cols=186 Identities=24% Similarity=0.332 Sum_probs=151.0
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH-----cC-----CCCCcc-----------EEEECCEecC-------
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-----GR-----NTLDAG-----------TIKLSFRQIS------- 84 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~-----gl-----~~p~~G-----------~I~~~g~~~~------- 84 (291)
.-|+|+|++|+.|.+++|.|++|||||||++.+. .. ..|..+ -|.++..++.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998662 11 012221 2455544430
Q ss_pred ----------------------------eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--
Q psy6612 85 ----------------------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-- 134 (291)
Q Consensus 85 ----------------------------~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 134 (291)
.+.|..++...+..||+.|++.|+..... ..++.++++.+||.+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~l~ 162 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGYIK 162 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCchhh
Confidence 13455555555678899999887654321 235667899999975
Q ss_pred CCCCcCcCChhHHHHHHHHHHHhcC---CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 135 AKKIVGALSGGQQRRISFAVSLLHN---PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 135 ~~~~~~~LSgGqkQrv~iAral~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
.++++.+|||||+||++|||+|+.+ |+++||||||+|||+..+..+++.|++++++|.|||++||+++++..||+++
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii 242 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 5899999999999999999999996 7999999999999999999999999999878999999999999997799999
Q ss_pred EE------eCCEEEEEech
Q psy6612 212 LM------RDDQYIGRLVH 224 (291)
Q Consensus 212 ~l------~~G~i~~~~~~ 224 (291)
.| ++|+++++|++
T Consensus 243 ~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 243 DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EecCCcCCCCCEEEEeCCC
Confidence 99 89999998763
No 367
>KOG0054|consensus
Probab=100.00 E-value=1.1e-35 Score=313.32 Aligned_cols=212 Identities=21% Similarity=0.343 Sum_probs=183.3
Q ss_pred CcccccccceEEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----
Q psy6612 10 DPEIIEVKHSVAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---- 83 (291)
Q Consensus 10 ~~~~~~~~~~l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---- 83 (291)
+|+-|.-+..++++|++.+|... .+|+||||+|++||-+||+|..|||||||+.++-++..|.+|+|.+||.++
T Consensus 1129 pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ig 1208 (1381)
T KOG0054|consen 1129 PPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIG 1208 (1381)
T ss_pred CCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccccc
Confidence 34566666789999999999764 899999999999999999999999999999999999999999999999998
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhH
Q psy6612 84 -----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQ 146 (291)
Q Consensus 84 -----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGq 146 (291)
++++.+||+|.+|.+ |++.|+.-+. ..++++.++ +++.++|. . +|..+ .++|-||
T Consensus 1209 L~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~---e~sD~~IW~----ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQ 1280 (1381)
T KOG0054|consen 1209 LHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD---EYSDDEIWE----ALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQ 1280 (1381)
T ss_pred HHHHHhcCeeeCCCCceecC-ccccccCccc---ccCHHHHHH----HHHHhChHHHHhhCCcCCCceecCCCccCChHH
Confidence 468999999999998 9999986432 223444443 44444432 1 34444 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhH
Q psy6612 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 147 kQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 226 (291)
||.++|||||+++++||+|||+|+++|+++-..+.+.|++-- .++|||.+.|+++.+..||||+||++|++++.++|.+
T Consensus 1281 RQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1281 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHH
Confidence 999999999999999999999999999999999999999864 3699999999999999999999999999999999998
Q ss_pred HHHH
Q psy6612 227 IVES 230 (291)
Q Consensus 227 ~~~~ 230 (291)
+.++
T Consensus 1360 Ll~~ 1363 (1381)
T KOG0054|consen 1360 LLSD 1363 (1381)
T ss_pred HHhC
Confidence 8754
No 368
>KOG0054|consensus
Probab=100.00 E-value=2.3e-35 Score=311.01 Aligned_cols=202 Identities=23% Similarity=0.415 Sum_probs=174.4
Q ss_pred ccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCC
Q psy6612 16 VKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~ 92 (291)
-+..++++|.+++.+. .+.|+||||+|++|+.+||+||-|||||+||.+|.|.++..+|+|.++|. ++|+||.
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----iaYv~Q~ 590 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----VAYVPQQ 590 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----EEEeccc
Confidence 3456889999998764 45899999999999999999999999999999999999999999999986 9999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-------CC-----CCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-------AK-----KIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~-----~~~~~LSgGqkQrv~iAral~~~p 160 (291)
|-+++. |++|||.|+..+ .+++.+++++.+.|.. .| .+--+||||||||++||||+.+++
T Consensus 591 pWI~ng-TvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~a 662 (1381)
T KOG0054|consen 591 PWIQNG-TVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDA 662 (1381)
T ss_pred cHhhCC-cHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccC
Confidence 999887 999999886432 2346666677666631 11 233469999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+++|||.|+|++|.+..+.+++..-.-.-+++|+|++||.++.+..||.|++|++|+|.+.|+.+++.+
T Consensus 663 dIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 663 DIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred CEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 999999999999999988888776644445799999999999999999999999999999999998875
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=8.2e-36 Score=244.08 Aligned_cols=123 Identities=41% Similarity=0.699 Sum_probs=110.3
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCCCCCCCCCCHHHHH
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQELALHGELSIRETF 105 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~~~l~~~ltv~enl 105 (291)
|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++ ..++|++|++.+++.+|+.+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999887 359999999999999999999
Q ss_pred HHhccccCCChHHHHHHHHHHHHHcCCCC-C----CCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 106 RYYGYMFDMTDDQIETRSKEILKLLELPP-A----KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~----~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
....++.++++.+++.. . ++++.+||+|||||++|||||+.+|+++||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 22345777888887643 3 34459999999999999999999999999999997
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=2.4e-35 Score=257.61 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=131.9
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc---------cEEEECCEec------CeEEEEcCCCCCCCCCC
Q psy6612 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA---------GTIKLSFRQI------SDIGYMPQELALHGELS 100 (291)
Q Consensus 36 ~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~---------G~I~~~g~~~------~~ig~v~q~~~l~~~lt 100 (291)
+++++++++| +++|+||||||||||+++|+|+++|.. |++.+.|.+. +.++|+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 999999999999999999999986653 4677777653 5699999998766
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHh----cCCCEEEEcccCCCCCHHH
Q psy6612 101 IRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL----HNPKLLILDEPTVGLDPIL 176 (291)
Q Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~----~~p~llllDEPtsgLD~~~ 176 (291)
|... . .+++.++++. -...++++.+||+|||||++||++++ .+|+++||||||+|||+.+
T Consensus 89 ------~~~~----~----~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~ 152 (197)
T cd03278 89 ------YSII----S----QGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDAN 152 (197)
T ss_pred ------eeEE----e----hhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHH
Confidence 1110 1 2355666666 22357889999999999999999997 4669999999999999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 177 SQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 177 ~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
+..+++.|+++++ +.|||++||+++.+..||+++.|..
T Consensus 153 ~~~l~~~l~~~~~-~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 153 VERFARLLKEFSK-ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHhcc-CCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999865 6899999999998877999999864
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=280.13 Aligned_cols=207 Identities=26% Similarity=0.446 Sum_probs=180.6
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
..+++++++.. ..++|+||++.+|||+||.|-=|||+|-|+++|.|..++.+|+|.++|+++ ..|+
T Consensus 262 ~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~ 337 (500)
T COG1129 262 PVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337 (500)
T ss_pred cEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCE
Confidence 35677777643 268999999999999999999999999999999999999999999999976 2499
Q ss_pred EEcCCC---CCCCCCCHHHHHHHhcc--cc---CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 88 YMPQEL---ALHGELSIRETFRYYGY--MF---DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 88 ~v~q~~---~l~~~ltv~enl~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~ 157 (291)
|||.|. .++..+++.+|+.+... .. -.+....++.++++.+.+++.- .+.++.+||||.||||.|||.|+
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~ 417 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA 417 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh
Confidence 999984 68999999999976511 11 2344555667888999999853 57899999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
.+|++|||||||.|+|..++.+++++|++++++|++||++|-++.++.. ||||++|++|++++..+.++..
T Consensus 418 ~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~t 489 (500)
T COG1129 418 TDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREEAT 489 (500)
T ss_pred cCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 9999999999999999999999999999999999999999999999975 9999999999999987766543
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=2.1e-34 Score=258.06 Aligned_cols=187 Identities=19% Similarity=0.249 Sum_probs=139.3
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH----------------cCCCCCcc--------E
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV----------------GRNTLDAG--------T 75 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~----------------gl~~p~~G--------~ 75 (291)
++++|. |+|++..++++++ |++++|+||||||||||+++|+ +++.+.+| +
T Consensus 4 i~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 4 VIIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred EEEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 445554 5688888888887 8899999999999999999998 55566666 6
Q ss_pred EEECCEe-----------c-CeEEEEcCCCCCCC-CCCHHHHHHHhccccCCChHHHH--HHHHHHHHHcCCCC-CCCCc
Q psy6612 76 IKLSFRQ-----------I-SDIGYMPQELALHG-ELSIRETFRYYGYMFDMTDDQIE--TRSKEILKLLELPP-AKKIV 139 (291)
Q Consensus 76 I~~~g~~-----------~-~~ig~v~q~~~l~~-~ltv~enl~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~-~~~~~ 139 (291)
|.+++.+ + +.+++++|+..+++ .+|..|+..+... .+....... ....++.+.+++.. .++++
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~-~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~ 156 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLES-AGFSRSNPYYIVPQGKINSLTNMKQDEQQEM 156 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHH-cCCCCCCCcEEEEcCchHHhhhccccccccc
Confidence 6665521 1 34899999888876 4577666554432 233221100 00112233344543 57889
Q ss_pred CcCChhHHHHHHHHHHHhc----CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEe
Q psy6612 140 GALSGGQQRRISFAVSLLH----NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMR 214 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~ 214 (291)
.+||||||||++|||||+. +|+++|+||||++||+.+++.+++.|+++++ +.|||++||+.+....||++++|.
T Consensus 157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhCCEEEEEE
Confidence 9999999999999999973 5899999999999999999999999999865 788999999976555699999985
No 373
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1e-34 Score=244.72 Aligned_cols=211 Identities=21% Similarity=0.334 Sum_probs=178.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
+++++++... +-|-.+|.++..||++-++||||||||||+-.++|++ |.+|+|.++|.++ +.-+|+
T Consensus 3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 4566666543 3477899999999999999999999999999999987 5699999999987 346899
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc-------CCC
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH-------NPK 161 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~-------~p~ 161 (291)
.|+..-...|.|+.++.+. .+.+.....+.++...+++++ ..+.+++|||||-|||-+|..+++ ..+
T Consensus 78 sQqq~p~f~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~ 152 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQ 152 (248)
T ss_pred hhccCCcchhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccce
Confidence 9987766678999988653 234556667888889999976 688999999999999999998765 346
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHHh
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALR 240 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 240 (291)
+||+|||.++||...+..+..+|.+++..|.+|||++||++.-.+ ||++++++.|++...|..+++... +-+...|+
T Consensus 153 LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~--~vL~q~fg 230 (248)
T COG4138 153 LLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP--PVLAQAYG 230 (248)
T ss_pred eEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh--HHHHHHhc
Confidence 999999999999999999999999999999999999999999755 999999999999999999888654 44555554
Q ss_pred c
Q psy6612 241 H 241 (291)
Q Consensus 241 ~ 241 (291)
.
T Consensus 231 ~ 231 (248)
T COG4138 231 M 231 (248)
T ss_pred c
Confidence 3
No 374
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=2.8e-35 Score=260.04 Aligned_cols=185 Identities=17% Similarity=0.196 Sum_probs=142.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
.|+++|+. +|++..++++++| ++++|+||||||||||+++|+-..-.+. ....-.++++++|+..+++.
T Consensus 5 ~l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~-----~~~~~~~i~~~~~~~~~~~~ 73 (212)
T cd03274 5 KLVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRA-----SKMRQKKLSDLIHNSAGHPN 73 (212)
T ss_pred EEEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCH-----HHhhhhhHHHHhcCCCCCCC
Confidence 36677775 8899999999988 8999999999999999999983211110 00011458999999999999
Q ss_pred CCHHHHHHHhcccc--------CCChHHHHH--HHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc----CCCEE
Q psy6612 99 LSIRETFRYYGYMF--------DMTDDQIET--RSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH----NPKLL 163 (291)
Q Consensus 99 ltv~enl~~~~~~~--------~~~~~~~~~--~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~----~p~ll 163 (291)
+|+.++..++...+ +...+.... ...++++.++++. .++++..||+|||||++||||++. +|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~il 153 (212)
T cd03274 74 LDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLY 153 (212)
T ss_pred CceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEE
Confidence 99998876655432 221111000 0245567777765 578899999999999999999974 47999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
+|||||+|||+.++..+++.|++++ ++.|+|++||+.+....||++++|..
T Consensus 154 ilDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 154 VMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999999999999999999999986 46789999999765566999999964
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=4.9e-34 Score=257.69 Aligned_cols=188 Identities=18% Similarity=0.236 Sum_probs=144.5
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCE-ec-----------CeE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFR-QI-----------SDI 86 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~-~~-----------~~i 86 (291)
+.++|. ++|....++. .+.+ .+++|+||||||||||+++|++++.++ .|++.+.+. ++ ..+
T Consensus 6 ~~~~~f-~~~~~~~~~~----~~~~-~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVIS----GFDP-QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeec----cCCC-CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence 445555 5565443332 3334 499999999999999999999999886 457777664 21 368
Q ss_pred EEEcCCC---------CCCCCCCHHHHHHHhccc-cCC-ChHHHHHHHHHHHHHcCCC--------------------C-
Q psy6612 87 GYMPQEL---------ALHGELSIRETFRYYGYM-FDM-TDDQIETRSKEILKLLELP--------------------P- 134 (291)
Q Consensus 87 g~v~q~~---------~l~~~ltv~enl~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~--------------------~- 134 (291)
++++|++ .+.+.+||.+++.+.... +.. ......+++.++++.+++. .
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~ 159 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGV 159 (251)
T ss_pred EEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHh
Confidence 9999985 345678888887553321 101 1223446788899999985 2
Q ss_pred CCCCcCcCChhHHHHHHHHHHHh----cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeE
Q psy6612 135 AKKIVGALSGGQQRRISFAVSLL----HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210 (291)
Q Consensus 135 ~~~~~~~LSgGqkQrv~iAral~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i 210 (291)
.++++.+||+|||||++|||||+ .+|+++|+||||++||+.++..+++.|+++. +|.|+|++||+.+..+.||++
T Consensus 160 ~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~~d~v 238 (251)
T cd03273 160 WKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNNANVL 238 (251)
T ss_pred hcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCCEE
Confidence 24788999999999999999998 5789999999999999999999999999985 488999999997666779999
Q ss_pred EEEe
Q psy6612 211 GLMR 214 (291)
Q Consensus 211 ~~l~ 214 (291)
+-+.
T Consensus 239 ~~~~ 242 (251)
T cd03273 239 FRTR 242 (251)
T ss_pred EEEE
Confidence 8775
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=100.00 E-value=2.6e-33 Score=247.25 Aligned_cols=184 Identities=16% Similarity=0.196 Sum_probs=134.9
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEe-CCcEEEEECCCCccHHHHHHHHHcCC-CCCccEEEECC--------EecCeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVP-ENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTIKLSF--------RQISDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~-~Gei~~liGpNGaGKSTLl~~i~gl~-~p~~G~I~~~g--------~~~~~ig~ 88 (291)
.|+++|+. +|.+. .+++|+.. +|++++|+||||||||||+++|++.+ .+..+....+. .....+++
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 46788887 65444 55667654 58999999999999999999999643 34444443321 11145899
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc---------
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH--------- 158 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~--------- 158 (291)
+||++.... ++. +..+.+.+...+.+ .+...++.. .++++.+||+|||||++|||||+.
T Consensus 81 ~f~~~~~~~--~~~-------r~~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~ 149 (213)
T cd03279 81 TFQLGGKKY--RVE-------RSRGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGG 149 (213)
T ss_pred EEEECCeEE--EEE-------EecCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccC
Confidence 998873211 111 11233333222211 234444443 578899999999999999999985
Q ss_pred -CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 159 -NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 159 -~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
+|+++||||||++||+.++..+.+.|.++++++.|||++||+++++.. ||+++++++|.
T Consensus 150 ~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 150 ARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 578999999999999999999999999998768999999999999976 89999999874
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.98 E-value=2.4e-32 Score=239.94 Aligned_cols=160 Identities=21% Similarity=0.244 Sum_probs=128.9
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHH----cCCCCCccEEEECCE------ecCeEEEEcCCC-----CCCCCCCH
Q psy6612 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIV----GRNTLDAGTIKLSFR------QISDIGYMPQEL-----ALHGELSI 101 (291)
Q Consensus 37 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~----gl~~p~~G~I~~~g~------~~~~ig~v~q~~-----~l~~~ltv 101 (291)
..++++.+| +++|+||||||||||+++|+ |...|+.|.+..+.+ .-..++++||++ .....+|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 344667788 99999999999999999995 999998886652111 114699999987 34455688
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHH------HHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 102 RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRR------ISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQr------v~iAral~~~p~llllDEPtsgLD~~ 175 (291)
++|+.+. ... .+.+.+ ++++.+||+||+|| ++||||++.+|+++++||||++||+.
T Consensus 94 ~~~~~~~------~~~----~~~~~~--------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~ 155 (204)
T cd03240 94 LENVIFC------HQG----ESNWPL--------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE 155 (204)
T ss_pred hhceeee------chH----HHHHHH--------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH
Confidence 8887542 111 122222 67889999999996 78999999999999999999999999
Q ss_pred HHH-HHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 176 LSQ-IIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 176 ~~~-~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
++. .+.++|.+++++ +.|||++||+++.+..||+++.|.+
T Consensus 156 ~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 156 NIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 999 999999999865 7899999999998877999999965
No 378
>KOG0065|consensus
Probab=99.97 E-value=3.7e-32 Score=282.03 Aligned_cols=218 Identities=29% Similarity=0.389 Sum_probs=186.9
Q ss_pred ccccccceEEEEeEEEEE----CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC--CCccEEEECCEec--
Q psy6612 12 EIIEVKHSVAVTSAYKKI----GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--LDAGTIKLSFRQI-- 83 (291)
Q Consensus 12 ~~~~~~~~l~~~~l~~~~----~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~~g~~~-- 83 (291)
..++.++...-+|+.+.- +.+++|+|||=-++||-.+||+|+|||||||||++|+|-.. ..+|+|.++|.+.
T Consensus 780 ~~~~~~~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q 859 (1391)
T KOG0065|consen 780 LSLTFKDVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ 859 (1391)
T ss_pred ccccccceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch
Confidence 345555666666666555 56789999999999999999999999999999999999753 3479999999876
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccC---CChHHHHHHHHHHHHHcCCCC-CCCCcCc----CChhHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFD---MTDDQIETRSKEILKLLELPP-AKKIVGA----LSGGQQRRIS 151 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~~----LSgGqkQrv~ 151 (291)
+.+|||-|++...+.+||+|-+.|.++++. .+.++..+.++++++.++|+. .+.-++. ||..||+|+.
T Consensus 860 ~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLT 939 (1391)
T KOG0065|consen 860 ETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLT 939 (1391)
T ss_pred hhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceee
Confidence 469999999988899999999999887763 345555678999999999976 5666666 9999999999
Q ss_pred HHHHHhcCC-CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH--hhhCeEEEEeC-CEEEEEechhHH
Q psy6612 152 FAVSLLHNP-KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA--KGAHNIGLMRD-DQYIGRLVHHDI 227 (291)
Q Consensus 152 iAral~~~p-~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~--~~~d~i~~l~~-G~i~~~~~~~~~ 227 (291)
||--|+.+| .+|+|||||||||..+...+++.+++++..|.||+.+-|.++-. +..|++++|++ |+.+.-|+..+-
T Consensus 940 IgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 940 IGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred EEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 999999999 89999999999999999999999999999999999999998764 55899999976 588888887654
Q ss_pred HH
Q psy6612 228 VE 229 (291)
Q Consensus 228 ~~ 229 (291)
..
T Consensus 1020 s~ 1021 (1391)
T KOG0065|consen 1020 SS 1021 (1391)
T ss_pred cH
Confidence 43
No 379
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.97 E-value=2e-30 Score=269.18 Aligned_cols=126 Identities=22% Similarity=0.336 Sum_probs=110.1
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC---CEEEEcccCCCCC
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP---KLLILDEPTVGLD 173 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p---~llllDEPtsgLD 173 (291)
||+.|++.|+..... . .+..++++.+||.+ .++++.+|||||+||+.||++|+.+| +++||||||+|||
T Consensus 792 ltv~E~l~~f~~~~~-----i-~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD 865 (943)
T PRK00349 792 MTVEEALEFFEAIPK-----I-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLH 865 (943)
T ss_pred CcHHHHHHHHHhchh-----h-hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCC
Confidence 688888877644321 1 23457899999975 58899999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVES 230 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~~ 230 (291)
+..+..+++.|++++++|.|||++||+++.+..||+++.| ++|++++.|+++++...
T Consensus 866 ~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 866 FEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 9999999999999987799999999999999779999999 79999999998887653
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.97 E-value=2.6e-30 Score=278.97 Aligned_cols=205 Identities=22% Similarity=0.313 Sum_probs=157.1
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHH---------HHHcCCCC------------------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLN---------CIVGRNTL------------------ 71 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~---------~i~gl~~p------------------ 71 (291)
.+++++++. ..|+++||+|++||+++|.|+||||||||++ .++|...+
T Consensus 600 ~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQs 674 (1809)
T PRK00635 600 TLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRD 674 (1809)
T ss_pred eEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCC
Confidence 567777752 3799999999999999999999999999999 55664322
Q ss_pred ------CccEEEECCE--ecC---------------eEEEEcCC---------------------C--------------
Q psy6612 72 ------DAGTIKLSFR--QIS---------------DIGYMPQE---------------------L-------------- 93 (291)
Q Consensus 72 ------~~G~I~~~g~--~~~---------------~ig~v~q~---------------------~-------------- 93 (291)
-++.+++-|- +++ ...|.|+. .
T Consensus 675 pigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e 754 (1809)
T PRK00635 675 LPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQ 754 (1809)
T ss_pred CCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHH
Confidence 1112331110 000 01112221 0
Q ss_pred ---CCCCCCCHHHHHHHhccc---cCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHh---cCCCE
Q psy6612 94 ---ALHGELSIRETFRYYGYM---FDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLL---HNPKL 162 (291)
Q Consensus 94 ---~l~~~ltv~enl~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~---~~p~l 162 (291)
..|...||.|++.+...- +.....+..+++ ++++.+|+.. .++++.+||||||||++|||||+ .+|++
T Consensus 755 ~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~L 833 (1809)
T PRK00635 755 VLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTL 833 (1809)
T ss_pred HHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence 245678999999764321 122234455566 5789999975 58999999999999999999997 69999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEe------CCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMR------DDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~------~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.++..++++|++++++|.|||++||+++.+..||++++|. +|+++..|+++++..
T Consensus 834 LILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 834 YVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999888999999999999996699999996 789999999988764
No 381
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=5.4e-30 Score=244.41 Aligned_cols=212 Identities=23% Similarity=0.361 Sum_probs=188.4
Q ss_pred ccceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 16 VKHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
-...|++++++..-.. ...+++|||++.+|||+||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+++
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 3567899999987643 5889999999999999999999999999999999999999999999999985
Q ss_pred CeEEEEcCCC---CCCCCCCHHHHHHHhccc------c-CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHH
Q psy6612 84 SDIGYMPQEL---ALHGELSIRETFRYYGYM------F-DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRIS 151 (291)
Q Consensus 84 ~~ig~v~q~~---~l~~~ltv~enl~~~~~~------~-~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~ 151 (291)
..+||||+|. .+.+.+|+.||+.+.... + -......++.+.++++.|++.. ...++..||||++||+-
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~I 413 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLI 413 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhh
Confidence 2599999986 688899999999764221 1 1445677888999999999853 56789999999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+||-|..+|++||+.+||.|||..+...+.+.|.+.++.|++|+++|-|++++.. ||||++|.+|++++..++++.
T Consensus 414 laREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 414 LARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred hhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccccC
Confidence 9999999999999999999999999999999999999999999999999999966 999999999999998887753
No 382
>KOG0927|consensus
Probab=99.97 E-value=6.1e-31 Score=252.48 Aligned_cols=201 Identities=24% Similarity=0.285 Sum_probs=164.0
Q ss_pred ceEEEEeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC--C
Q psy6612 18 HSVAVTSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL--A 94 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~--~ 94 (291)
+.+.+.|+++.|.++ .++++++|-++.++.++++||||||||||||+++|.+.|+.|.|.-.-. ..+++.-|+. .
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H--~~~~~y~Qh~~e~ 465 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH--NKLPRYNQHLAEQ 465 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc--ccchhhhhhhHhh
Confidence 356678899999766 6889999999999999999999999999999999999999999975332 2355656653 3
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
+.-..++.|++.- .+. +....+.+..++..+||.. .+.++++||+|||.||.+|++++.+|.+|+|||||+||
T Consensus 466 ldl~~s~le~~~~---~~~--~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhL 540 (614)
T KOG0927|consen 466 LDLDKSSLEFMMP---KFP--DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHL 540 (614)
T ss_pred cCcchhHHHHHHH---hcc--ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCC
Confidence 3344577776642 222 1223456778899999974 57999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHHH
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDIV 228 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~ 228 (291)
|..+...+.+.|.++. .+||++|||...+.. ++++++..||.+. ..|......
T Consensus 541 Di~tid~laeaiNe~~---Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 541 DIETIDALAEAINEFP---GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CchhHHHHHHHHhccC---CceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999999873 589999999999977 9999999998764 456654443
No 383
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.4e-29 Score=260.75 Aligned_cols=123 Identities=23% Similarity=0.345 Sum_probs=103.8
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhc---CCCEEEEcccCCCCC
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLH---NPKLLILDEPTVGLD 173 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~---~p~llllDEPtsgLD 173 (291)
||+.|.+.|+...... .+..++++.+||.. .++++.+|||||+||+.||++|+. +|+++||||||+|||
T Consensus 790 ~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD 863 (924)
T TIGR00630 790 MTVEEAYEFFEAVPSI------SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLH 863 (924)
T ss_pred CcHHHHHHHHHhccch------hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCC
Confidence 4555555554332211 13456788899974 588999999999999999999997 599999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDI 227 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~ 227 (291)
+..+..+++.|++++++|.|||++||+++.+..||+++.| ++|+++..|+++++
T Consensus 864 ~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 864 FDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999987899999999999999779999999 79999999987654
No 384
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.97 E-value=1.3e-29 Score=221.64 Aligned_cols=165 Identities=19% Similarity=0.205 Sum_probs=126.6
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc-----cE----EEECCEecCeEEEEcCCCCCCCCCCHHHH
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA-----GT----IKLSFRQISDIGYMPQELALHGELSIRET 104 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~-----G~----I~~~g~~~~~ig~v~q~~~l~~~ltv~en 104 (291)
.++++++++.+| +.+|+||||||||||+.+|.-...... |. +.-.|.+...+.+.+|+..+++ |
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------~ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------N 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC------C
Confidence 457788899888 999999999999999999985443321 11 1111222245888898877665 1
Q ss_pred HHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH----hcCCCEEEEcccCCCCCHHHHHHH
Q psy6612 105 FRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL----LHNPKLLILDEPTVGLDPILSQII 180 (291)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral----~~~p~llllDEPtsgLD~~~~~~i 180 (291)
... ......+.++++. -...++++++||+|||||++||+|+ +.+|+++||||||+|||+..+..+
T Consensus 84 -----~~~----~~~~~~~~~~l~~--~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~ 152 (198)
T cd03276 84 -----PLC----VLSQDMARSFLTS--NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIS 152 (198)
T ss_pred -----cCC----HHHHHHHHHHhcc--ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHH
Confidence 111 1113456667766 2225789999999999999999999 589999999999999999999999
Q ss_pred HHHHHHhHhC---CcEEEEEccCHhHHhhhCeEEEEeCC
Q psy6612 181 WDRLKEMALN---GKTIIITTHYIEEAKGAHNIGLMRDD 216 (291)
Q Consensus 181 ~~~l~~l~~~---g~tii~~tHd~~~~~~~d~i~~l~~G 216 (291)
.+.|.++.++ +.|||++||+++++..+|+|.+|..+
T Consensus 153 ~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~ 191 (198)
T cd03276 153 TDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMK 191 (198)
T ss_pred HHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEec
Confidence 9999998643 36899999999999888999999864
No 385
>KOG0927|consensus
Probab=99.96 E-value=8.9e-30 Score=244.48 Aligned_cols=202 Identities=26% Similarity=0.377 Sum_probs=153.1
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
++.-+.+.++++.|.+...++|++|++.+|+-|||+|||||||||+|++|.|-..|..-++-+. .+.++. .
T Consensus 72 ~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y--------~ls~e~-~ 142 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFY--------LLSREI-E 142 (614)
T ss_pred ccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchh--------hhcccC-C
Confidence 4556889999999999999999999999999999999999999999999999998865444321 111111 0
Q ss_pred CCCCCHHHHHH-----------Hhc--------------------cccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcC
Q psy6612 96 HGELSIRETFR-----------YYG--------------------YMFDMTDDQIETRSKEILKLLELP-P-AKKIVGAL 142 (291)
Q Consensus 96 ~~~ltv~enl~-----------~~~--------------------~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~L 142 (291)
....++.+.+. +.. +.-.+..+....++..+|.-+|.. . .++.+..|
T Consensus 143 ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 143 PSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL 222 (614)
T ss_pred CchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence 11111111111 000 000112223444555666666764 3 57899999
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE-EEE
Q psy6612 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ-YIG 220 (291)
Q Consensus 143 SgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~-i~~ 220 (291)
|||+|.|++|||||..+|++|+|||||++||+.+...+-+.|.++.. .++++++|+-+.+.. |.+|+-|++++ +..
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchhhhhhHhhhhheecccceeee
Confidence 99999999999999999999999999999999999999999998742 289999999999976 99999999998 567
Q ss_pred EechhHHH
Q psy6612 221 RLVHHDIV 228 (291)
Q Consensus 221 ~~~~~~~~ 228 (291)
.|+.+...
T Consensus 301 ~Gnydqy~ 308 (614)
T KOG0927|consen 301 EGNYDQYV 308 (614)
T ss_pred cCCHHHHh
Confidence 78776553
No 386
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.4e-30 Score=238.51 Aligned_cols=192 Identities=22% Similarity=0.281 Sum_probs=156.1
Q ss_pred eEEEEeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCe---------EEE
Q psy6612 19 SVAVTSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---------IGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~---------ig~ 88 (291)
.|+++|+.+.|..+ .-+..||++|++||++-|+|.||||||||++++.|+.+|++|+|.+||+++.. ++-
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH
Confidence 58999999999765 67899999999999999999999999999999999999999999999998731 333
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC----CCC--CcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP----AKK--IVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~--~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
||.|..+|+.+ .+.......+.++.+++++.+.+ .+. ..-.||.|||+|+++.-|++-+.++
T Consensus 402 vFsDyhLF~~l------------l~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~I 469 (546)
T COG4615 402 VFSDYHLFDQL------------LGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDI 469 (546)
T ss_pred HhhhHhhhHhh------------hCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCe
Confidence 44444444321 11111122345666666666532 233 3347999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHh-HhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEe
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEM-ALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRL 222 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l-~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~ 222 (291)
+++||=.+--||..++.|+..+.-+ +++|+||+.+|||-.....|||++.|++|++++..
T Consensus 470 lv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 470 LVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred EEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999888655 57899999999998888889999999999998754
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1.7e-29 Score=218.69 Aligned_cols=211 Identities=20% Similarity=0.330 Sum_probs=165.9
Q ss_pred EEEEeEEEEE----CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC----CccEEEECCEec--------
Q psy6612 20 VAVTSAYKKI----GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 20 l~~~~l~~~~----~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p----~~G~I~~~g~~~-------- 83 (291)
|.+.|++..+ |...+++++|+++.+|||-|++|++|||||-..|.|+|..+- +.-+..+++.++
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 3455566555 567899999999999999999999999999999999999763 344455555443
Q ss_pred -----CeEEEEcCCCC--CCCCCCHHHHHH--Hhcccc-CC---ChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhH
Q psy6612 84 -----SDIGYMPQELA--LHGELSIRETFR--YYGYMF-DM---TDDQIETRSKEILKLLELPP----AKKIVGALSGGQ 146 (291)
Q Consensus 84 -----~~ig~v~q~~~--l~~~ltv~enl~--~~~~~~-~~---~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGq 146 (291)
++|+++||+|. +.|.-++...+- ...+.+ +. .-...++++-+++.++|+.+ ...++.+|-.|+
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE 163 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGE 163 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCc
Confidence 35899999985 444434332221 111111 00 01123567888999999953 358999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEech
Q psy6612 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 147 kQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~ 224 (291)
-|+|+||.|++.+|++||.||||+++|+.++.+++.+|.++.+ +|.||+++|||+..+.. ||++-+|.=|+-+++++.
T Consensus 164 ~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~ 243 (330)
T COG4170 164 CQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPS 243 (330)
T ss_pred ceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccch
Confidence 9999999999999999999999999999999999999999974 58999999999999976 999999999988888887
Q ss_pred hHHHHH
Q psy6612 225 HDIVES 230 (291)
Q Consensus 225 ~~~~~~ 230 (291)
+++.+.
T Consensus 244 e~l~~~ 249 (330)
T COG4170 244 EELVTM 249 (330)
T ss_pred hHHhcC
Confidence 776553
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.96 E-value=1.1e-29 Score=228.93 Aligned_cols=186 Identities=15% Similarity=0.105 Sum_probs=128.4
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE--------e------cCe
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR--------Q------ISD 85 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~--------~------~~~ 85 (291)
|+++|+ ++|.+... |.+.++ +++|+||||||||||+.+|++++.+..|++...+. . -..
T Consensus 4 i~l~nf-~~~~~~~~-----~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~ 76 (247)
T cd03275 4 LELENF-KSYKGRHV-----IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAY 76 (247)
T ss_pred EEEECc-cccCCCee-----ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEE
Confidence 456665 55654332 333445 99999999999999999999999887777754321 1 112
Q ss_pred EEEEc--CCCCC-CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-----------------------CCCCc
Q psy6612 86 IGYMP--QELAL-HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-----------------------AKKIV 139 (291)
Q Consensus 86 ig~v~--q~~~l-~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------------~~~~~ 139 (291)
+...+ |++.. ....++.+....+ ...+ .....+.+.++++.+|+.. .++++
T Consensus 77 v~~~f~~~~~~~~~~~~~~~~~~~~~-~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~ 153 (247)
T cd03275 77 VTAVYEDDDGEEKTFRRIITGGSSSY-RING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM 153 (247)
T ss_pred EEEEEEcCCCcEEEEEEEEECCceEE-EECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH
Confidence 33333 43221 0001111111000 0111 1112334567778888731 12345
Q ss_pred CcCChhHHHHHHHHHHHhcC----CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 140 GALSGGQQRRISFAVSLLHN----PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~~----p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
.+||+|||||++||+|++.+ |+++||||||++||+..+..+.+.|++++++|.|||++||+.+.+..||++++|..
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 89999999999999999875 89999999999999999999999999998668999999999888777999988864
No 389
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.96 E-value=7.7e-29 Score=244.18 Aligned_cols=190 Identities=27% Similarity=0.355 Sum_probs=158.9
Q ss_pred cceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
+..++++|++..-.+ ...|++.||++++||-+.|.||||||||||+|+|+|+-+.-+|+|.+-. -.++-|+||.|.+
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~--~~~~lflpQ~PY~ 467 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA--DSALLFLPQRPYL 467 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC--CCceEEecCCCCC
Confidence 468999999998854 6889999999999999999999999999999999999999999998752 1458999999999
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC----CC---CCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP----AK---KIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~---~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
... |.+|-+.|+......++ +.+.++|.++||.+ .+ +=-..||+|||||+++||.|+++|++++|||.
T Consensus 468 p~G-tLre~l~YP~~~~~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 468 PQG-TLREALCYPNAAPDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred CCc-cHHHHHhCCCCCCCCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 888 99999988754432333 35667888888853 11 11236999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEe
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMR 214 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~ 214 (291)
|++||+.++..+++.+++-. .+.|||-|+|....-...++.+-+.
T Consensus 543 TsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 543 TSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999998854 4799999999988876655544443
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=232.06 Aligned_cols=187 Identities=25% Similarity=0.340 Sum_probs=149.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
.++-.+++|.||+. .|.==.=+|..||++|++||||-||||+.++|+|.++|++|. ..+ -+++|-||--.--.+
T Consensus 342 lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~-~~vSyKPQyI~~~~~ 415 (591)
T COG1245 342 LVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED-LKVSYKPQYISPDYD 415 (591)
T ss_pred eeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc-ceEeecceeecCCCC
Confidence 44556667777643 233334456678899999999999999999999999999998 222 359999998655566
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHH
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~ 177 (291)
.||.+.+.-..... .... ..-.++++-++|+. .++++.+|||||.|||+||.||..++++++||||++.||.+.+
T Consensus 416 gtV~~~l~~~~~~~-~~~s---~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 416 GTVEDLLRSAIRSA-FGSS---YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred CcHHHHHHHhhhhh-cccc---hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 79999876432210 1111 12345777888877 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 178 QIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 178 ~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
-.+.+.|+++.+ .++|.++|.||+-.+.. +||+++.+.
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999985 47999999999999987 999999864
No 391
>KOG0062|consensus
Probab=99.96 E-value=4e-29 Score=238.81 Aligned_cols=198 Identities=23% Similarity=0.277 Sum_probs=147.3
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-eEEEEcCC-CCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-DIGYMPQE-LALHG 97 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~-~ig~v~q~-~~l~~ 97 (291)
|.+.+++..||++.+|++-++++..|..|||+|+||+|||||||+|+. |+|.....+-. .--+++.. ..+..
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~ 154 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLES 154 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhc
Confidence 667899999999999999999999999999999999999999999997 44443322100 01122211 12233
Q ss_pred CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 98 ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 98 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
++++.+.+.--..+.. .....+....+|.-+|.+. ..+++++||||=|.|++|||||..+||+|||||||+.||..
T Consensus 155 D~~~~dfl~~e~~l~~--~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~ 232 (582)
T KOG0062|consen 155 DTERLDFLAEEKELLA--GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV 232 (582)
T ss_pred cHHHHHHHHhhhhhhc--cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhH
Confidence 3344444322111110 0012223334788899865 47899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE-EEEechhHHH
Q psy6612 176 LSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY-IGRLVHHDIV 228 (291)
Q Consensus 176 ~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i-~~~~~~~~~~ 228 (291)
+...+.+.|..+. .|+|+||||-+++.. |..|+-+++-++ ...|..+++.
T Consensus 233 av~WLe~yL~t~~---~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 233 AVAWLENYLQTWK---ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred HHHHHHHHHhhCC---ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 9999999999873 799999999999977 999988888666 3456655553
No 392
>KOG0066|consensus
Probab=99.95 E-value=2.6e-27 Score=222.97 Aligned_cols=207 Identities=24% Similarity=0.372 Sum_probs=164.8
Q ss_pred eEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCC--C
Q psy6612 19 SVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA--L 95 (291)
Q Consensus 19 ~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~--l 95 (291)
+|-+.++++.| |.++.+++++|-|.-...++|+||||.||||||+++.|-+.|+.|+.+-+-+ -+||+.-|... |
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr--L~iG~FdQh~~E~L 663 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR--LRIGWFDQHANEAL 663 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce--eeeechhhhhHHhh
Confidence 56788999999 6789999999999999999999999999999999999999999998875433 35999888753 4
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-CC-CCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-PA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~-~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
-..-|..|++. +.++++-. .+...|-.|||. ++ .-.+..||||||-||++|-.-+..|+||||||||++||
T Consensus 664 ~~Eetp~EyLq---r~FNlpyq----~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 664 NGEETPVEYLQ---RKFNLPYQ----EARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD 736 (807)
T ss_pred ccccCHHHHHH---HhcCCChH----HHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence 44457777653 44555543 456678899994 44 35788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHHHHHHHHHHHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDIVESLVEALED 237 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~~~~~~~~~~ 237 (291)
.++...+.+.|+++. ..|||||||-.++.. -...+++.+..|- -+|..++...++.+.+-+
T Consensus 737 IESIDALaEAIney~---GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkkEVLdaLGE 799 (807)
T KOG0066|consen 737 IESIDALAEAINEYN---GGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKKEVLDALGE 799 (807)
T ss_pred hhhHHHHHHHHHhcc---CcEEEEecccceeeecCceEEEEccCChhhccccHHHHHHHHHHHHHH
Confidence 999999999999983 479999999999855 3467777665442 235555555554444443
No 393
>KOG0062|consensus
Probab=99.94 E-value=6.2e-27 Score=223.86 Aligned_cols=192 Identities=24% Similarity=0.310 Sum_probs=160.7
Q ss_pred eEEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 19 SVAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 19 ~l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
.+++.++++.|... +.+.+++++++.-.-.+++|+||+||||+++++.|-..|..|.+.+.++ .+|+|.+|...-+
T Consensus 362 ~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r--~ri~~f~Qhhvd~ 439 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR--LRIKYFAQHHVDF 439 (582)
T ss_pred eeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc--ceecchhHhhhhH
Confidence 57788899999654 4999999999999999999999999999999999999999999888765 6799999976433
Q ss_pred CCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 97 GELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
-++.+... .+....+ +.. ++.+++.+..||++. +..++..||||||-||++|.+...+|-+|+|||||+.||
T Consensus 440 l~~~v~~v-d~~~~~~pG~~----~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD 514 (582)
T KOG0062|consen 440 LDKNVNAV-DFMEKSFPGKT----EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD 514 (582)
T ss_pred HHHHhHHH-HHHHHhCCCCC----HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcccc
Confidence 33333322 2222222 333 345667799999974 456689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEE
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~ 220 (291)
..+...+.+.|+.+. ..|||||||.+++.. |+.+++.++|++..
T Consensus 515 ~dsl~AL~~Al~~F~---GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 515 RDSLGALAKALKNFN---GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHHHHHHHHHhcC---CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999998883 479999999999987 99999999999865
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.94 E-value=1.4e-26 Score=202.51 Aligned_cols=145 Identities=21% Similarity=0.206 Sum_probs=111.3
Q ss_pred eEeeeeEEEeCCc-EEEEECCCCccHHHHHHHHH--------cCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHH
Q psy6612 34 VLKGLNLNVPENK-IYGLLGPSGCGKTTLLNCIV--------GRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRET 104 (291)
Q Consensus 34 ~L~~vsl~i~~Ge-i~~liGpNGaGKSTLl~~i~--------gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~en 104 (291)
.+-++||++.+|+ +++|.||||||||||+|+|+ |...|....+ .++|+.|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~--------~~~~~~~~------------ 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS--------SLPVFENI------------ 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc--------cCcCccEE------------
Confidence 3557999999995 89999999999999999998 4443321111 12221111
Q ss_pred HHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHH-H
Q psy6612 105 FRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW-D 182 (291)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~-~ 182 (291)
+..++... .+...+.+|+||+|++.+++++ .+|+++++||||+|||+..+..++ .
T Consensus 76 ----------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~ 132 (200)
T cd03280 76 ----------------------FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIA 132 (200)
T ss_pred ----------------------EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHH
Confidence 11112211 3556789999999999999884 899999999999999999999996 4
Q ss_pred HHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 183 RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 183 ~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
.++.+.+.|.|+|++||+.+....||+++.|++|++..+
T Consensus 133 ~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 133 ILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 678887678999999999665566999999999998765
No 395
>KOG2355|consensus
Probab=99.94 E-value=1.1e-25 Score=194.38 Aligned_cols=203 Identities=25% Similarity=0.404 Sum_probs=162.5
Q ss_pred cceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
+..+++.++.++|.. .+++-|+|++++.|....++|.||||||||||+++|-.---.|.|.+.|++. .+.
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 346889999999954 6899999999999999999999999999999999998766679999999764 124
Q ss_pred EEEcCC----------CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH
Q psy6612 87 GYMPQE----------LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 87 g~v~q~----------~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral 156 (291)
.|+-.+ ..+--++++.+.+. .. -+... ++-+.+++.++++. .-+.+.+|-|||+||.|+..|
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mif-gV--~g~dp----~Rre~LI~iLDIdl-~WRmHkvSDGqrRRVQicMGL 162 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIF-GV--GGDDP----ERREKLIDILDIDL-RWRMHKVSDGQRRRVQICMGL 162 (291)
T ss_pred eEecccccccccccccccccccccHHHHHh-hc--cCCCh----hHhhhhhhheeccc-eEEEeeccccchhhhHHHHhc
Confidence 444322 22333556655542 21 11111 34456777777653 356788999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
++.-++|+|||-|--||..++..+++.+++-++ +|.||+..||..+-++. ..++++|++|+++.....+.+
T Consensus 163 L~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 163 LKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred ccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence 999999999999999999999999999999885 58999999999999876 999999999999876555443
No 396
>KOG0060|consensus
Probab=99.93 E-value=9.3e-25 Score=211.39 Aligned_cols=196 Identities=24% Similarity=0.313 Sum_probs=157.5
Q ss_pred ccceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-CeEEEEcCC
Q psy6612 16 VKHSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-SDIGYMPQE 92 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-~~ig~v~q~ 92 (291)
-++++++++++..=. +..+++|+||+|++|+-+.|.||||||||+|+|.++|+-+-.+|++..-.+.- +++-|+||.
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 357899999988763 45678899999999999999999999999999999999999999998644321 559999999
Q ss_pred CCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC-------CCCCc-----CcCChhHHHHHHHHHHHhcC
Q psy6612 93 LALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP-------AKKIV-----GALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------~~~~~-----~~LSgGqkQrv~iAral~~~ 159 (291)
|.+..+ |.+|-+-|+..-. ...+....+++.+.|+.++|.+ .+.++ ..||+|||||+++||.+.++
T Consensus 510 PYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~k 588 (659)
T KOG0060|consen 510 PYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHK 588 (659)
T ss_pred CCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcC
Confidence 998877 9999988863221 1111111234555555555531 23222 46999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
|++-||||-||++|......+.+.+++ .|.|.|-|+|.-.+-+.-|.++-|+.
T Consensus 589 Pk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 589 PKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred CceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 999999999999999999999988877 48999999999998888899988875
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=1.1e-25 Score=212.76 Aligned_cols=181 Identities=23% Similarity=0.324 Sum_probs=135.8
Q ss_pred eEEEEECCEeeEeeeeE-EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEec--------
Q psy6612 24 SAYKKIGNHVVLKGLNL-NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK-----------LSFRQI-------- 83 (291)
Q Consensus 24 ~l~~~~~~~~~L~~vsl-~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-----------~~g~~~-------- 83 (291)
.+..+||.+ -++=-.+ ...+|+++||+||||-||||-+|+|+|.+.|.=|+-. |.|..+
T Consensus 79 e~vHRYg~N-gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVN-GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCC-ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 456677642 1222223 4678999999999999999999999999999877542 111111
Q ss_pred ---CeEEEEcCC----CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 ---SDIGYMPQE----LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ---~~ig~v~q~----~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAra 155 (291)
-++..-+|- |..+.. +|.|.+.- .+.+-..+++.+.++|.. .++.+++||||+-||++||.|
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG-~v~elLk~---------~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~ 227 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKG-KVGELLKK---------VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAA 227 (591)
T ss_pred cCCcceecchHHHHHHHHHhcc-hHHHHHHh---------hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHH
Confidence 012222221 222222 44443321 111235678899999977 799999999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
++++.+++++|||+|-||...+-...+.|+++++.+++||+|.||+..+.. +|-|.++-.
T Consensus 228 l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 228 LLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 999999999999999999999999999999999878999999999999987 999988864
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=2.2e-25 Score=197.06 Aligned_cols=172 Identities=15% Similarity=0.128 Sum_probs=109.4
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc---------EEEECCEecCeEEEEcCCCCCCCCCCHHHHH
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG---------TIKLSFRQISDIGYMPQELALHGELSIRETF 105 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G---------~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl 105 (291)
++++.+++.+| +.+|+|||||||||||.+|+-.+..... +....|..-..|-..++....- =..+|+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~---~~~~n~ 89 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGN---IQVDNL 89 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCc---cccCCc
Confidence 45677777776 8899999999999999998776632221 0111121111122222221100 001111
Q ss_pred HHhc------cccCCChHHHHHHHHHHHHHcCC-CC-CCCCcCcCChhHHHHHHHHHHH----hcCCCEEEEcccCCCCC
Q psy6612 106 RYYG------YMFDMTDDQIETRSKEILKLLEL-PP-AKKIVGALSGGQQRRISFAVSL----LHNPKLLILDEPTVGLD 173 (291)
Q Consensus 106 ~~~~------~~~~~~~~~~~~~~~~~l~~~~l-~~-~~~~~~~LSgGqkQrv~iAral----~~~p~llllDEPtsgLD 173 (291)
.+.. .+..+.. .+++..+.- .. .+..+.+||+|||||+.+|++| +.+|+++|+||||++||
T Consensus 90 ~~~~~q~~~~~~~~~~~-------~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD 162 (213)
T cd03277 90 CQFLPQDRVGEFAKLSP-------IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMD 162 (213)
T ss_pred eEEEchHHHHHHHhCCh-------HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCC
Confidence 1000 0000111 122222221 12 3567889999999999877654 58999999999999999
Q ss_pred HHHHHHHHHHHHHhHhC-C-cEEEEEccCHhHHhh-hC--eEEEEeCCE
Q psy6612 174 PILSQIIWDRLKEMALN-G-KTIIITTHYIEEAKG-AH--NIGLMRDDQ 217 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~-g-~tii~~tHd~~~~~~-~d--~i~~l~~G~ 217 (291)
+.++..+++.|.+++++ | .|+|++||++..... || ++++|.+|+
T Consensus 163 ~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 163 PTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999765 5 589999999977743 65 788898885
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.91 E-value=1.4e-23 Score=180.61 Aligned_cols=74 Identities=27% Similarity=0.297 Sum_probs=69.5
Q ss_pred CChhHHHHHHHHHHHh----cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 142 LSGGQQRRISFAVSLL----HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 142 LSgGqkQrv~iAral~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
||+|||||++|||+++ .+|+++++|||+++||+..+..+.+.|.++.+.|.|+|++||+++.+..+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 9999999999999996 6999999999999999999999999999997668999999999998877999999875
No 400
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.91 E-value=1.6e-24 Score=189.71 Aligned_cols=140 Identities=20% Similarity=0.190 Sum_probs=108.5
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
++.+++|++|+. |++++|+||||||||||+|+|+|... +...|.++..-.+++|...+|+.+|+.||+.+...
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s 85 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGIS 85 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecCccCcccceEEEeccchhccccccC
Confidence 345788887765 79999999999999999999998653 12345554334577887778999999999976432
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHH-HHHHHhHh
Q psy6612 111 MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW-DRLKEMAL 189 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~ 189 (291)
.+ ..+. +++.++++.+++ .+|+++|+||||+|+|+..+..+. .+++.+.+
T Consensus 86 ~~---~~e~-~~~~~iL~~~~~-------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~ 136 (199)
T cd03283 86 YF---YAEL-RRLKEIVEKAKK-------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN 136 (199)
T ss_pred hH---HHHH-HHHHHHHHhccC-------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH
Confidence 21 2222 456777777662 799999999999999999998775 57888876
Q ss_pred CCcEEEEEccCHhHHhh
Q psy6612 190 NGKTIIITTHYIEEAKG 206 (291)
Q Consensus 190 ~g~tii~~tHd~~~~~~ 206 (291)
.|.|+|++||+++++..
T Consensus 137 ~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 137 KNTIGIISTHDLELADL 153 (199)
T ss_pred CCCEEEEEcCcHHHHHh
Confidence 78999999999999864
No 401
>KOG0065|consensus
Probab=99.91 E-value=4.6e-24 Score=222.12 Aligned_cols=198 Identities=24% Similarity=0.346 Sum_probs=168.6
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC---CccEEEECCEec------CeEEEEcCCCCCCCCCCHH
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL---DAGTIKLSFRQI------SDIGYMPQELALHGELSIR 102 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p---~~G~I~~~g~~~------~~ig~v~q~~~l~~~ltv~ 102 (291)
..+|+|+|.-+++|+++.++||.|||||||+++++|-+.- ..|+|.++|.+. +.++|.+|+...++.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4799999999999999999999999999999999998753 357999999875 4589999999999999999
Q ss_pred HHHHHhccccCC-------ChHHHH-HHHHHHHHHcCCCC-CCCC-----cCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 103 ETFRYYGYMFDM-------TDDQIE-TRSKEILKLLELPP-AKKI-----VGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 103 enl~~~~~~~~~-------~~~~~~-~~~~~~l~~~~l~~-~~~~-----~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
|.+.|.++..+. .+.+.. ...+.+++.+||+. +|.. .+..|||||+||.+|-+++.+|+++.+||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 999997765432 222211 14567899999975 4544 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhH-H-hhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEE-A-KGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~-~-~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|.|||..+.-++.+.|++++. .+.|.+++-|.... + ...|.|++|.+|+++..|+.++...
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999984 47899999888655 3 4489999999999999999887654
No 402
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.90 E-value=1e-23 Score=178.60 Aligned_cols=140 Identities=25% Similarity=0.279 Sum_probs=105.9
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEE-EcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY-MPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~-v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
....++.+.++.+.+|+|||||||||+++++....-..+|.+.... .. +.|+ +++....+
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~----------------- 71 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV-KAGCIVAAVSAEL----------------- 71 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc-cCCCcceeeEEEE-----------------
Confidence 3455666667779999999999999999998877766655544311 11 1110 11110000
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhc----CCCEEEEcccCCCCCHHHHHHHHHHHHHhHh
Q psy6612 114 MTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLH----NPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 189 (291)
+ ....+||+||+||+++|++|+. +|+++|+|||++|+|+..+..+.+.+.++..
T Consensus 72 ------------------i----~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~ 129 (162)
T cd03227 72 ------------------I----FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV 129 (162)
T ss_pred ------------------e----hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 0 0001299999999999999987 7899999999999999999999999999865
Q ss_pred CCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 190 NGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 190 ~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
++.++|++||+.+....+|+++.|..
T Consensus 130 ~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 130 KGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred cCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 58899999999999988999999864
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1e-22 Score=186.49 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=69.9
Q ss_pred cCcCChhHHHHHHHHHHHhc----CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEe
Q psy6612 139 VGALSGGQQRRISFAVSLLH----NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMR 214 (291)
Q Consensus 139 ~~~LSgGqkQrv~iAral~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~ 214 (291)
...|||||+||+++|++++. +|+++|+||||++||+..+..+.+.|+++.+ +.|+|++||++.....||++++|.
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~~~~~d~~~~l~ 246 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQVAAMADNHFLVE 246 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHHHHhcCcEEEEE
Confidence 34599999999999997654 9999999999999999999999999999864 689999999999766699999998
Q ss_pred CCE
Q psy6612 215 DDQ 217 (291)
Q Consensus 215 ~G~ 217 (291)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 863
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.89 E-value=3.9e-23 Score=183.81 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=113.9
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEE-EEcCCCCCCCCCCHHHHHHHh
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG-YMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig-~v~q~~~l~~~ltv~enl~~~ 108 (291)
+...+.+|++++..+|++++|.||||+|||||+++++-. .+ +.++| |||.+...++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~----la~~g~~vpa~~~~~~----------- 71 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL----MAQIGCFVPCDSADIP----------- 71 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH----HHHhCCCcCcccEEEe-----------
Confidence 345789999999999999999999999999999999821 00 12333 4443321111
Q ss_pred ccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH--hcCCCEEEEccc---CCCCCHHHHHHHHHH
Q psy6612 109 GYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL--LHNPKLLILDEP---TVGLDPILSQIIWDR 183 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral--~~~p~llllDEP---tsgLD~~~~~~i~~~ 183 (291)
.+++++..+++.+ .....+|.||+|++.+++++ +.+|+++||||| |+++|+.+... .+
T Consensus 72 -------------~~~~il~~~~l~d--~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~i 134 (222)
T cd03285 72 -------------IVDCILARVGASD--SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AI 134 (222)
T ss_pred -------------ccceeEeeecccc--chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HH
Confidence 1223455556542 23678999999999999999 899999999999 99999988854 34
Q ss_pred HHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEec
Q psy6612 184 LKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 184 l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~ 223 (291)
++.+.+ .|.++|++||+.+....||++..+++|++.....
T Consensus 135 l~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 135 AEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 455553 4789999999744445599999999999876654
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.88 E-value=1.1e-21 Score=212.58 Aligned_cols=108 Identities=21% Similarity=0.158 Sum_probs=98.4
Q ss_pred HHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcC---CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEE
Q psy6612 122 RSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHN---PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196 (291)
Q Consensus 122 ~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~ 196 (291)
+..+.|..+||.+ +.++..+|||||.||+-||.-|..+ +.++||||||+||++.....+++.|.+|.+.|.|||+
T Consensus 1678 ~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tviv 1757 (1809)
T PRK00635 1678 KPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757 (1809)
T ss_pred HHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3456788899976 5799999999999999999999875 7899999999999999999999999999999999999
Q ss_pred EccCHhHHhhhCeEEEEe------CCEEEEEechhHHHH
Q psy6612 197 TTHYIEEAKGAHNIGLMR------DDQYIGRLVHHDIVE 229 (291)
Q Consensus 197 ~tHd~~~~~~~d~i~~l~------~G~i~~~~~~~~~~~ 229 (291)
+.||++.++.||.++-|- .|+|++.|+++++.+
T Consensus 1758 ieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1758 IDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999884 468999999998865
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.88 E-value=3.1e-22 Score=187.82 Aligned_cols=177 Identities=29% Similarity=0.430 Sum_probs=142.7
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--------CCCccEEEECCEecCeEEEEcCCC-CCCCCCCHH
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--------TLDAGTIKLSFRQISDIGYMPQEL-ALHGELSIR 102 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--------~p~~G~I~~~g~~~~~ig~v~q~~-~l~~~ltv~ 102 (291)
..+++|+||++++|++++++|+|||||||+|++|+|.. +|++|.|.+--.. --+++|.+. .-|...|+.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--~~a~iPge~Ep~f~~~til 473 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--VSALIPGEYEPEFGEVTIL 473 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--hhhccCcccccccCchhHH
Confidence 46999999999999999999999999999999999974 6899999874332 234555442 123345666
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHcCCCC---CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHH
Q psy6612 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179 (291)
Q Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~ 179 (291)
|.+.- ..+ + -..+.+++...|+.+ ..+++++||-|||.|+.||++++..|.+++.||-.|.||+.+...
T Consensus 474 ehl~s---~tG---D--~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~r 545 (593)
T COG2401 474 EHLRS---KTG---D--LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545 (593)
T ss_pred HHHhh---ccC---c--hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHH
Confidence 66531 111 1 134678899999965 367889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhH-hCCcEEEEEccCHhHHhh--hCeEEEEeCCEE
Q psy6612 180 IWDRLKEMA-LNGKTIIITTHYIEEAKG--AHNIGLMRDDQY 218 (291)
Q Consensus 180 i~~~l~~l~-~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i 218 (291)
+..-|.+++ +-|.|++++||+.+.... -|.++++.=|.+
T Consensus 546 VArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 546 VARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 999999998 459999999999999854 588888866544
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.88 E-value=6e-23 Score=179.65 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=105.1
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC-CCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCC
Q psy6612 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMT 115 (291)
Q Consensus 37 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~-~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~ 115 (291)
..++++.+|++++|+||||||||||+++|++.. .+..|. |+|.....++. .+.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~------------~~~~~~~~i~~---~dq----------- 74 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGC------------FVPAESASIPL---VDR----------- 74 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCC------------CccccccccCC---cCE-----------
Confidence 355666689999999999999999999999543 222232 22211110000 000
Q ss_pred hHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHH-HHHHhHhCCcE
Q psy6612 116 DDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD-RLKEMALNGKT 193 (291)
Q Consensus 116 ~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~g~t 193 (291)
++..++... .....+.+|.+++| +..+.+++.+|+++|+||||+|+|+..+..+.. +++.+.+.+.+
T Consensus 75 ----------i~~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~ 143 (202)
T cd03243 75 ----------IFTRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCR 143 (202)
T ss_pred ----------EEEEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Confidence 011111111 23445677888776 666678889999999999999999998888765 56666666899
Q ss_pred EEEEccCHhHHhhhCeEEEEeCCEEEEEech
Q psy6612 194 IIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 194 ii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~ 224 (291)
+|++||+.+.+..|+++..+.++++..++..
T Consensus 144 vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 144 TLFATHFHELADLPEQVPGVKNLHMEELITT 174 (202)
T ss_pred EEEECChHHHHHHhhcCCCeEEEEEEEEecC
Confidence 9999999988888889888988888776543
No 408
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.88 E-value=5.6e-22 Score=206.42 Aligned_cols=131 Identities=26% Similarity=0.421 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHhccccCCChH----------HHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC--CE
Q psy6612 97 GELSIRETFRYYGYMFDMTDD----------QIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP--KL 162 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~----------~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p--~l 162 (291)
..+||.|.+.|...+ +.+.. ++..++. +++.+||.+ .++++.+|||||+|||+||+||+.+| ++
T Consensus 435 ~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 435 SELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred hcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 357999988875433 22221 2334443 688899974 58999999999999999999999997 99
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+..+..++++|++++++|.|||+|||+++++..||++++| ++|+++++|+++++..
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 999999999999999999999999988899999999999998779999999 9999999999888744
No 409
>KOG0064|consensus
Probab=99.88 E-value=3.4e-22 Score=191.88 Aligned_cols=185 Identities=23% Similarity=0.351 Sum_probs=138.3
Q ss_pred cceEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 17 KHSVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
.+-|.++|+-.-- .+..++..++|+|++|-.+.|+||||||||+|+|+|.|+-+...|...+=- ..++.|+||.|.+
T Consensus 479 ~~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~--~~~mFYIPQRPYm 556 (728)
T KOG0064|consen 479 FNGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR--PNNIFYIPQRPYM 556 (728)
T ss_pred ccceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC--CcceEeccCCCcc
Confidence 3446666665443 235578999999999999999999999999999999999998888766521 1469999999987
Q ss_pred CCCCCHHHHHHHhccc-----cCCChHHHHHHHHHHHHHcCCCC-CCC---------CcCcCChhHHHHHHHHHHHhcCC
Q psy6612 96 HGELSIRETFRYYGYM-----FDMTDDQIETRSKEILKLLELPP-AKK---------IVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~-----~~~~~~~~~~~~~~~l~~~~l~~-~~~---------~~~~LSgGqkQrv~iAral~~~p 160 (291)
--. |.+|-+-|+... .+..+. ....++..+.|++ ..+ --..||||+|||+++||.+.|.|
T Consensus 557 s~g-tlRDQIIYPdS~e~~~~kg~~d~----dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrP 631 (728)
T KOG0064|consen 557 SGG-TLRDQIIYPDSSEQMKRKGYTDQ----DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRP 631 (728)
T ss_pred CcC-cccceeecCCcHHHHHhcCCCHH----HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCc
Confidence 633 777776554221 123332 2344455444432 111 11359999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
++-+|||-||+..+.....+.+..+.. |.+.|-+||.+..-+.-.+++
T Consensus 632 kyalLDEcTsAvsidvE~~i~~~ak~~---gi~llsithrpslwk~h~~ll 679 (728)
T KOG0064|consen 632 KYALLDECTSAVSIDVEGKIFQAAKDA---GISLLSITHRPSLWKYHTHLL 679 (728)
T ss_pred chhhhhhhhcccccchHHHHHHHHHhc---CceEEEeecCccHHHHHHHHH
Confidence 999999999999999988888877764 899999999999887544433
No 410
>KOG0066|consensus
Probab=99.87 E-value=1.2e-22 Score=191.68 Aligned_cols=202 Identities=24% Similarity=0.326 Sum_probs=148.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC---CCCCccEEEECCEec------------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR---NTLDAGTIKLSFRQI------------ 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl---~~p~~G~I~~~g~~~------------ 83 (291)
-|.++|++.+-.++..+.+.|+.|-.|..|||+||||-||||||+.|+.- ++| .=.|.++.+.+
T Consensus 264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-nIDvLlCEQEvvad~t~Ai~tvl 342 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-NIDVLLCEQEVVADSTSAIDTVL 342 (807)
T ss_pred cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-CCceEeeeeeeeecCcHHHHHHH
Confidence 37789999999899999999999999999999999999999999999864 334 33344443332
Q ss_pred ----CeEEEEcCCC-----CCCCCCCHHHHHHH-hccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHH
Q psy6612 84 ----SDIGYMPQEL-----ALHGELSIRETFRY-YGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRIS 151 (291)
Q Consensus 84 ----~~ig~v~q~~-----~l~~~ltv~enl~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~ 151 (291)
++..++-.+. ..-...|+.|-+.- +..++.......+.++..+|.-+|++. .++|...+|||-|.||+
T Consensus 343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066|consen 343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence 0011100000 00112344433321 111111122223456777888888865 47899999999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEech
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVH 224 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~ 224 (291)
|||||...|-+|.|||||+.||..+...+-++|..|+ +|.++||||-.++.. |..|+-|++.++- ..|..
T Consensus 423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred HHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence 9999999999999999999999999999999999885 699999999999976 9999999987764 34443
No 411
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.6e-21 Score=193.49 Aligned_cols=108 Identities=24% Similarity=0.299 Sum_probs=98.0
Q ss_pred HHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC---CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEE
Q psy6612 123 SKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP---KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197 (291)
Q Consensus 123 ~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~ 197 (291)
..+.|..+||.. +-++..+|||||.|||-||.-|.... -++||||||+||-..-.+++++.|.+|...|.|||++
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVI 881 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVI 881 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 335677789976 57999999999999999999998877 8999999999999999999999999999999999999
Q ss_pred ccCHhHHhhhCeEEEE------eCCEEEEEechhHHHHH
Q psy6612 198 THYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVES 230 (291)
Q Consensus 198 tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~~ 230 (291)
.|+++.++.||.|+=| ..|+|++.|+|+++.+.
T Consensus 882 EHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~ 920 (935)
T COG0178 882 EHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKV 920 (935)
T ss_pred ecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhC
Confidence 9999999999999887 45789999999998763
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=1.8e-21 Score=202.25 Aligned_cols=130 Identities=26% Similarity=0.388 Sum_probs=108.2
Q ss_pred CCCHHHHHHHhccccCCCh---------HHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC--CEEE
Q psy6612 98 ELSIRETFRYYGYMFDMTD---------DQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP--KLLI 164 (291)
Q Consensus 98 ~ltv~enl~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p--~lll 164 (291)
.||+.|.+.|+..+..... .++..++ +.+..+||.+ .++++.+|||||+|||.||+||+.+| ++||
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llI 512 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYV 512 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEE
Confidence 5799998887654321110 1122222 3467788864 58999999999999999999999986 8999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIV 228 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~ 228 (291)
|||||+|||+..+..+++.|++++++|.|||+|+||++.+..||++++| ++|+++++|+++++.
T Consensus 513 LDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 513 LDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 9999999999999999999999988899999999999998889999999 999999999987764
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.86 E-value=6.5e-22 Score=173.83 Aligned_cols=141 Identities=17% Similarity=0.207 Sum_probs=106.7
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhc
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~ 109 (291)
.+..+.+|++|++++|++++|+||||+||||++++++++.- +.++|+-. |..+..+++.|++.
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~------------la~~G~~v--pa~~~~l~~~d~I~--- 76 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI------------MAQIGCFV--PAEYATLPIFNRLL--- 76 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH------------HHHcCCCc--chhhcCccChhhee---
Confidence 35679999999999999999999999999999999998741 12233211 33344455655552
Q ss_pred cccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHH-HHHHHHh
Q psy6612 110 YMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII-WDRLKEM 187 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i-~~~l~~l 187 (291)
..++..+ .++..+.+|+||+|+ ..+.+++.+|+++|+|||++|+|+.....+ ..+++.+
T Consensus 77 ------------------~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l 137 (204)
T cd03282 77 ------------------SRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECL 137 (204)
T ss_pred ------------------EecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHH
Confidence 2223332 456778999999976 455668899999999999999999776555 4567777
Q ss_pred HhCCcEEEEEccCHhHHhh
Q psy6612 188 ALNGKTIIITTHYIEEAKG 206 (291)
Q Consensus 188 ~~~g~tii~~tHd~~~~~~ 206 (291)
.+.|.++|++||+.+.+..
T Consensus 138 ~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 138 IKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HhcCCEEEEECChHHHHHH
Confidence 7779999999999999875
No 414
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.8e-20 Score=169.06 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=64.6
Q ss_pred cCcCChhHHHHHHHHHHHh---------cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-h-
Q psy6612 139 VGALSGGQQRRISFAVSLL---------HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-A- 207 (291)
Q Consensus 139 ~~~LSgGqkQrv~iAral~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~- 207 (291)
...+|+||||+++||++|+ .+|+++|+||||++||+..+..+++.+.++. .+++++|+.+.+.. |
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~~~~~~~~ 256 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLADFDALWL 256 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCchhccchhc
Confidence 4558999999999999986 7999999999999999999999999998763 46677777666644 6
Q ss_pred --CeEEEEeCCEE
Q psy6612 208 --HNIGLMRDDQY 218 (291)
Q Consensus 208 --d~i~~l~~G~i 218 (291)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 68999999975
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.81 E-value=9.3e-20 Score=161.46 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=101.6
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~ 109 (291)
...+.+|++|+.++ ++++|+|||||||||++|+|+++.-. ..|.. +-... ..++++.| +|+.+++.|++...
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~-vp~~~-~~i~~~~~---i~~~~~~~~~ls~g- 89 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSF-VPASK-AEIGVVDR---IFTRIGASDDLAGG- 89 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCe-ecccc-ceecceee---EeccCCchhhhccC-
Confidence 45689999999988 99999999999999999999875422 12211 11111 34555543 34555555555321
Q ss_pred cccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH--hcCCCEEEEccc---CCCCCHHHHHHHHHHH
Q psy6612 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL--LHNPKLLILDEP---TVGLDPILSQIIWDRL 184 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral--~~~p~llllDEP---tsgLD~~~~~~i~~~l 184 (291)
.|.=+..++.+++++ +.+|+++||||| |+++|.... ...++
T Consensus 90 --------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il 135 (216)
T cd03284 90 --------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIV 135 (216)
T ss_pred --------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHH
Confidence 122233334444444 579999999999 888887552 33455
Q ss_pred HHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEech
Q psy6612 185 KEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 185 ~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~ 224 (291)
..+.+. +.++|++||+.+....+|++..+.+|++......
T Consensus 136 ~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~ 176 (216)
T cd03284 136 EYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKG 176 (216)
T ss_pred HHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeC
Confidence 555555 7899999999876666888777788877655443
No 416
>KOG0063|consensus
Probab=99.81 E-value=2.9e-19 Score=168.41 Aligned_cols=180 Identities=23% Similarity=0.326 Sum_probs=143.0
Q ss_pred EEECC-EeeEeeeeEEEeCCc-----EEEEECCCCccHHHHHHHHHcCCCCCcc-EEEECCEecCeEEEEcCCCCCCCCC
Q psy6612 27 KKIGN-HVVLKGLNLNVPENK-----IYGLLGPSGCGKTTLLNCIVGRNTLDAG-TIKLSFRQISDIGYMPQELALHGEL 99 (291)
Q Consensus 27 ~~~~~-~~~L~~vsl~i~~Ge-----i~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~~~ig~v~q~~~l~~~l 99 (291)
++|.+ +.-+.+..|.|+.|+ ++..+|+||.|||||+++++|.++|++| +| +.-+++|-||...--..-
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~-----p~lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEI-----PVLNVSYKPQKISPKREG 417 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcc-----cccceeccccccCccccc
Confidence 34533 567888999999985 7899999999999999999999999876 22 335688999986554445
Q ss_pred CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHH
Q psy6612 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178 (291)
Q Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~ 178 (291)
||++.+.--.+-..+. .+-+.+.++-+.+++ .++.+..||||++|||++|.+|-..+++++.|||.+-||.+.+.
T Consensus 418 tvR~ll~~kIr~ay~~----pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi 493 (592)
T KOG0063|consen 418 TVRQLLHTKIRDAYMH----PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRI 493 (592)
T ss_pred hHHHHHHHHhHhhhcC----HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHH
Confidence 8887664211111111 234556677777766 58899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 179 IIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 179 ~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
.--..++++. ..++|-.+|.||.-.+-. +||+++.+.
T Consensus 494 ~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 494 IASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred HHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 9999999875 567899999999988866 999988864
No 417
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.76 E-value=5.1e-19 Score=152.94 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=86.3
Q ss_pred EEEEECCCCccHHHHHHHHH-cCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIV-GRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~-gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~ 125 (291)
+++|.||||+||||++|.++ ...-+..|...... . ..+++ .++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~-~-~~~~~----------------------------------~d~ 44 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAE-S-AELPV----------------------------------FDR 44 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeeh-h-eEecc----------------------------------cce
Confidence 36899999999999999998 33333333211100 0 00111 011
Q ss_pred HHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHH-HHHHHhHhC-CcEEEEEccCHh
Q psy6612 126 ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW-DRLKEMALN-GKTIIITTHYIE 202 (291)
Q Consensus 126 ~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tii~~tHd~~ 202 (291)
++..++..+ .++..+++|+|++|...+++. +.+|+++|+|||++|+|+.....+. .+++.+.++ +.++|++||+++
T Consensus 45 il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 45 IFTRIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred EEEEeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 123334433 467788999999984444432 4599999999999999999877764 556677664 889999999997
Q ss_pred HHhhhCeEEEEeCC
Q psy6612 203 EAKGAHNIGLMRDD 216 (291)
Q Consensus 203 ~~~~~d~i~~l~~G 216 (291)
....|++.--+.++
T Consensus 124 l~~~~~~~~~v~~~ 137 (185)
T smart00534 124 LTKLADEHPGVRNL 137 (185)
T ss_pred HHHHhhcCccceEE
Confidence 66657643333333
No 418
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.75 E-value=4.2e-18 Score=155.50 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=86.3
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCe----------EEEEcCCCCCCCCCCHHHHHHHhccccCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD----------IGYMPQELALHGELSIRETFRYYGYMFDMT 115 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~----------ig~v~q~~~l~~~ltv~enl~~~~~~~~~~ 115 (291)
.-++|+||||||||||+++|+|+++|++|+|.++|+++.. ++++||.. +...++|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v-------------- 176 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDV-------------- 176 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccc--------------
Confidence 5789999999999999999999999999999999987521 11222211 1111111
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEE
Q psy6612 116 DDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195 (291)
Q Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii 195 (291)
|.+=.|.....+.+.+++|+++++|||++ ...+..++..+. .|.|+|
T Consensus 177 --------------------------~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~-~G~~vI 223 (270)
T TIGR02858 177 --------------------------LDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH-AGVSII 223 (270)
T ss_pred --------------------------cccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh-CCCEEE
Confidence 11111121224444447999999999974 334555555554 689999
Q ss_pred EEccCHhH--Hh-----------h-hCeEEEEeCCEEEEEechh
Q psy6612 196 ITTHYIEE--AK-----------G-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 196 ~~tHd~~~--~~-----------~-~d~i~~l~~G~i~~~~~~~ 225 (291)
++||+.+. +. . ++|+++|++|+ ..|..+
T Consensus 224 ~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~ 265 (270)
T TIGR02858 224 ATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVE 265 (270)
T ss_pred EEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCcee
Confidence 99997655 41 3 79999999875 444443
No 419
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.74 E-value=3.2e-17 Score=144.98 Aligned_cols=134 Identities=18% Similarity=0.201 Sum_probs=93.2
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH--cCCCCCccEEEECCEecCeEEEEcCCCCCC-CCCCHHHHHHHhc
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV--GRNTLDAGTIKLSFRQISDIGYMPQELALH-GELSIRETFRYYG 109 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~--gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~-~~ltv~enl~~~~ 109 (291)
.+=+|+++.=..+.+++|.||||+|||||||.|+ +++ +..|...+... ..++|..|...-+ ...++.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~--~~~~~~d~i~~~l~~~~si~~------ 87 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADS--ATIGLVDKIFTRMSSRESVSS------ 87 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCC--cEEeeeeeeeeeeCCccChhh------
Confidence 3445555542223799999999999999999998 434 56676655322 3466666642211 1111111
Q ss_pred cccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCC--hhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHH-HHHHHHHHHH
Q psy6612 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALS--GGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL-SQIIWDRLKE 186 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LS--gGqkQrv~iAral~~~p~llllDEPtsgLD~~~-~~~i~~~l~~ 186 (291)
.+| .-+-||+++|++++.+|.++|+|||++|+|+.. ...+..++++
T Consensus 88 -------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~ 136 (213)
T cd03281 88 -------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEH 136 (213)
T ss_pred -------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHH
Confidence 112 335689999999999999999999999999976 4455678888
Q ss_pred hHhC---CcEEEEEccCHhHHhh
Q psy6612 187 MALN---GKTIIITTHYIEEAKG 206 (291)
Q Consensus 187 l~~~---g~tii~~tHd~~~~~~ 206 (291)
+.+. +.++|++||+.+.+..
T Consensus 137 l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 137 LLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHhcCCCCcEEEEEcChHHHHHh
Confidence 8754 2589999999999865
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.72 E-value=9.8e-18 Score=172.45 Aligned_cols=147 Identities=22% Similarity=0.325 Sum_probs=104.4
Q ss_pred eEEEEeEEEEECCEeeEee-----eeEEEeCC-cEEEEECCCCccHHHHHHHHHcC-CCCCccEEEECCEecCeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKG-----LNLNVPEN-KIYGLLGPSGCGKTTLLNCIVGR-NTLDAGTIKLSFRQISDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~-----vsl~i~~G-ei~~liGpNGaGKSTLl~~i~gl-~~p~~G~I~~~g~~~~~ig~v~q 91 (291)
.+.++++. ++++++ +|+++..+ ++++|.||||+|||||||+|+|. +.+..|- +||.
T Consensus 295 ~i~l~~~r-----hPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------~Vpa 357 (771)
T TIGR01069 295 KIILENAR-----HPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------PIPA 357 (771)
T ss_pred CEEEcccc-----CceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC------------CccC
Confidence 45555544 355544 78899888 89999999999999999999997 4444441 3333
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
.... .+...+.+. . .+... + ......+++|+||+|++.|++++ .+|.++|+|||++|
T Consensus 358 ~~~~--~~~~~d~i~--~---~i~~~---~------------si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~G 414 (771)
T TIGR01069 358 NEHS--EIPYFEEIF--A---DIGDE---Q------------SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAG 414 (771)
T ss_pred Cccc--cccchhhee--e---ecChH---h------------HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCC
Confidence 3210 011122221 0 11110 0 02345788999999999998876 78999999999999
Q ss_pred CCHHHHHHH-HHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 172 LDPILSQII-WDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 172 LD~~~~~~i-~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
+||.....+ ..++..+.+.|.++|++||+.+...
T Consensus 415 tD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 415 TDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 999999999 5677888777899999999988754
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.71 E-value=5.7e-16 Score=147.22 Aligned_cols=77 Identities=26% Similarity=0.331 Sum_probs=67.2
Q ss_pred cCcCChhHHHHHHHHHHHh---------cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-h-
Q psy6612 139 VGALSGGQQRRISFAVSLL---------HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-A- 207 (291)
Q Consensus 139 ~~~LSgGqkQrv~iAral~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~- 207 (291)
...+|.||||+++||++|+ .+|+++|||||+++||+..+..+++.+.++ +..++++||+.+.+.. +
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~~ 347 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLLE 347 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhhc
Confidence 3579999999999999996 699999999999999999999999998765 3589999999887743 3
Q ss_pred -CeEEEEeCCEE
Q psy6612 208 -HNIGLMRDDQY 218 (291)
Q Consensus 208 -d~i~~l~~G~i 218 (291)
++++.|++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999986
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.69 E-value=2.9e-17 Score=145.01 Aligned_cols=171 Identities=23% Similarity=0.270 Sum_probs=99.0
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHH-cCCC-CC-c-------cEEEE-CCE---ecCeEEEEcCCCCCC----C
Q psy6612 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-GRNT-LD-A-------GTIKL-SFR---QISDIGYMPQELALH----G 97 (291)
Q Consensus 36 ~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~-gl~~-p~-~-------G~I~~-~g~---~~~~ig~v~q~~~l~----~ 97 (291)
+...+.+.+| +++|+|||||||||++.+|. .+-. +. + .-|.. ... ....+...+++.... .
T Consensus 16 ~~~~~~~~~~-~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSPG-LNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTSS-EEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCCC-CEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 5667777665 99999999999999999993 3321 11 1 11111 000 012244444443211 0
Q ss_pred C-CCHHHHHHHhc--cccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHh----cCCCEEEEcccCC
Q psy6612 98 E-LSIRETFRYYG--YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL----HNPKLLILDEPTV 170 (291)
Q Consensus 98 ~-ltv~enl~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~----~~p~llllDEPts 170 (291)
. ..+...+.-.. .++-.......+.+.+.+...++.. ..||||||.+++||.-|+ ..++++|||||.+
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~-----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~ 169 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISP-----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDA 169 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTT-----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccc
Confidence 0 00000000000 0000001111234455566555432 289999999999997653 4789999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE
Q psy6612 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM 213 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l 213 (291)
+||...+..+.++|+++.+ +.-+|++||+...+..||+.+.+
T Consensus 170 ~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 170 ALDEQNRKRLADLLKELSK-QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp TS-HHHHHHHHHHHHHHTT-TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 9999999999999999864 47899999999999889886655
No 423
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=2e-15 Score=134.37 Aligned_cols=138 Identities=16% Similarity=0.147 Sum_probs=92.9
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHc-CCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG-RNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g-l~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~ 109 (291)
...+.+|++|++.+|++++|.||||+||||+++++++ .+.++.|...+.. . ..++|..|= +..+...|
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~-~~~~~~~~i---~~~~~~~d------ 85 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S-ATLSIFDSV---LTRMGASD------ 85 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c-eEEeccceE---EEEecCcc------
Confidence 3568999999999999999999999999999999999 6678888766532 2 123332211 00000001
Q ss_pred cccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHH--HHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHH-HHHHHH
Q psy6612 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQ--RRISFAVSLLHNPKLLILDEPTVGLDPILSQII-WDRLKE 186 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqk--Qrv~iAral~~~p~llllDEPtsgLD~~~~~~i-~~~l~~ 186 (291)
.....+|.=+. +++.-+..-+.+|.++|+|||.+|.|+.....+ ..+++.
T Consensus 86 ---------------------------~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~ 138 (222)
T cd03287 86 ---------------------------SIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHY 138 (222)
T ss_pred ---------------------------ccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHH
Confidence 11112222222 222222223568999999999999997777664 567777
Q ss_pred hHhC-CcEEEEEccCHhHHhh
Q psy6612 187 MALN-GKTIIITTHYIEEAKG 206 (291)
Q Consensus 187 l~~~-g~tii~~tHd~~~~~~ 206 (291)
+.+. +.++|++||+.+....
T Consensus 139 l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 139 LLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHhccCCeEEEEcccHHHHHH
Confidence 7765 7899999999998754
No 424
>KOG0063|consensus
Probab=99.63 E-value=2e-16 Score=149.34 Aligned_cols=171 Identities=18% Similarity=0.278 Sum_probs=119.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE--CCEecCeEEEE--------cCCCCC--CCCCCHHHHHHH-hc
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL--SFRQISDIGYM--------PQELAL--HGELSIRETFRY-YG 109 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~--~g~~~~~ig~v--------~q~~~l--~~~ltv~enl~~-~~ 109 (291)
.+|++.|++|.||-||||-+++++|-++|.-|.--- ++..+ ++|. |+.+.. +....-.+++.. +.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~i--l~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEI--LTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHH--hhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 589999999999999999999999999998764321 00111 1110 000000 000000111110 00
Q ss_pred ccc----C-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHH
Q psy6612 110 YMF----D-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183 (291)
Q Consensus 110 ~~~----~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~ 183 (291)
... + ......++...++++.+.|.. .++-+.+||||+-||.+||.+.+++.+++++|||.+.||...+..-...
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence 000 0 011112234455677777766 6788999999999999999999999999999999999999999999999
Q ss_pred HHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 184 LKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 184 l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
|+.+.....=||+|.||++.+.. .|-+..+..
T Consensus 256 IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 256 IRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred HHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 99998777889999999999987 888887754
No 425
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=5.2e-16 Score=136.48 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=45.1
Q ss_pred CcCChh--HHHHHHHHHHHhcCCCEEEEcccC-----CCCCHHHHHHHHHHHHHhHh
Q psy6612 140 GALSGG--QQRRISFAVSLLHNPKLLILDEPT-----VGLDPILSQIIWDRLKEMAL 189 (291)
Q Consensus 140 ~~LSgG--qkQrv~iAral~~~p~llllDEPt-----sgLD~~~~~~i~~~l~~l~~ 189 (291)
+..||+ |++++.|||+++.+|+++++|||| ++|||..++.+.+.++++++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 344444 999999999999999999999999 99999999999999999863
No 426
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.60 E-value=2.1e-15 Score=155.60 Aligned_cols=139 Identities=19% Similarity=0.251 Sum_probs=97.0
Q ss_pred eeEEEe-CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEE-EEcCCCCCCCCCCHHHHHHHhccccCCC
Q psy6612 38 LNLNVP-ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG-YMPQELALHGELSIRETFRYYGYMFDMT 115 (291)
Q Consensus 38 vsl~i~-~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig-~v~q~~~l~~~ltv~enl~~~~~~~~~~ 115 (291)
.++.+. .+.++.|.|||++||||+||+++...- +.++| |||-... ..+++++++.
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~------------maq~G~~vpa~~~--~~i~~~~~i~--------- 375 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL------------MAKSGLPIPANEP--SEIPVFKEIF--------- 375 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHH------------HHHhCCCcccCCC--ccccccceEE---------
Confidence 344554 456899999999999999999964310 11222 3333210 0122223321
Q ss_pred hHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHH-HHHHhHhCCcE
Q psy6612 116 DDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD-RLKEMALNGKT 193 (291)
Q Consensus 116 ~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~g~t 193 (291)
..+|-.. ..+..+++|+||+|++.|++++ .+|.++|+|||++|+||.....+.. ++..+.+.|.+
T Consensus 376 ------------~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~ 442 (782)
T PRK00409 376 ------------ADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAK 442 (782)
T ss_pred ------------EecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 1122222 3467889999999999999998 8999999999999999999988865 56777777899
Q ss_pred EEEEccCHhHHhh-hCeEEE
Q psy6612 194 IIITTHYIEEAKG-AHNIGL 212 (291)
Q Consensus 194 ii~~tHd~~~~~~-~d~i~~ 212 (291)
+|++||+.+.... +++..+
T Consensus 443 vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 443 IIATTHYKELKALMYNREGV 462 (782)
T ss_pred EEEECChHHHHHHHhcCCCe
Confidence 9999999988866 554443
No 427
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.59 E-value=1.2e-14 Score=131.27 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=104.8
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh-----ccccC
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY-----GYMFD 113 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~-----~~~~~ 113 (291)
=+.+.+|+.++|+||+|+|||||++.|++......+++.. +.++.+++. .++.+...-. ..-.+
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~-------~v~vI~er~----~ev~el~~~I~~~~v~~~~~ 78 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYL-------IVLLIDERP----EEVTDMQRSVKGEVIASTFD 78 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEE-------EEEEccCCC----ccHHHHHHHhccEEEEecCC
Confidence 3578999999999999999999999999988765433321 222222221 1222222111 00011
Q ss_pred CChHH-------HHHHHHHHHHHcCC------CCCC-----------CCcCcCChhH--------HHHHHHHHHHhcCCC
Q psy6612 114 MTDDQ-------IETRSKEILKLLEL------PPAK-----------KIVGALSGGQ--------QRRISFAVSLLHNPK 161 (291)
Q Consensus 114 ~~~~~-------~~~~~~~~l~~~~l------~~~~-----------~~~~~LSgGq--------kQrv~iAral~~~p~ 161 (291)
.+... ....++...+ -|- +... ..-..+|||+ +||+++||++..+++
T Consensus 79 ~~~~~~~~~~~~~~~~a~~~~~-~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gs 157 (249)
T cd01128 79 EPPERHVQVAEMVLEKAKRLVE-HGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGS 157 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCc
Confidence 11100 0011111110 010 0000 1113479999 999999999999999
Q ss_pred EEEEcccCCCCCHHHHHH-HHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEE
Q psy6612 162 LLILDEPTVGLDPILSQI-IWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIG 220 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~-i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~ 220 (291)
+.+| ||+.+|..+... ++ +..+...+.|.|+.||++.....+|.|.+|+.|.+..
T Consensus 158 It~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~ 213 (249)
T cd01128 158 LTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKE 213 (249)
T ss_pred eEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccc
Confidence 9999 999999644433 43 4555445789999999999999999999999998743
No 428
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.58 E-value=3.4e-15 Score=117.81 Aligned_cols=68 Identities=22% Similarity=0.165 Sum_probs=58.7
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCCCCCCCCCCHH
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQELALHGELSIR 102 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~~~l~~~ltv~ 102 (291)
..+|+++||++++|++++|+||||||||||++++. +|++.++|.++ +.++|++|+ +++ .|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHH
Confidence 57899999999999999999999999999999986 89999999876 236777777 444 4999
Q ss_pred HHHHHh
Q psy6612 103 ETFRYY 108 (291)
Q Consensus 103 enl~~~ 108 (291)
|||.+.
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999864
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.57 E-value=6.9e-15 Score=147.33 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=71.0
Q ss_pred CcCChhHHHHHHHHHHHhcC----CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 140 GALSGGQQRRISFAVSLLHN----PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~~----p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
..|||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++.+ +.+||++||++..+..||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHHhcCeEEEEEE
Confidence 36899999999999999985 699999999999999999999999999974 7999999999998877999999987
Q ss_pred CE
Q psy6612 216 DQ 217 (291)
Q Consensus 216 G~ 217 (291)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 63
No 430
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.56 E-value=2e-14 Score=128.50 Aligned_cols=148 Identities=17% Similarity=0.195 Sum_probs=93.4
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHH-HHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTL-LNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTL-l~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
+.++++.+.+++ .+++|++++|.|||||||||| +++++++.++... +.|+..+
T Consensus 8 ~~~~~ld~~l~g---------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~-----------~~yi~~e------ 61 (230)
T PRK08533 8 LSRDELHKRLGG---------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS-----------VSYVSTQ------ 61 (230)
T ss_pred EEEeeeehhhCC---------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc-----------EEEEeCC------
Confidence 345667766654 389999999999999999999 6999988764322 3344322
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhc----CCCEEEEcccCCCC--
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLH----NPKLLILDEPTVGL-- 172 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~----~p~llllDEPtsgL-- 172 (291)
.+..+.+..... .+..-+ ++...=.+...+-. ..+|+++.++-.+++.+.. +|+++++||||+++
T Consensus 62 ~~~~~~~~~~~~-~g~~~~-------~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~ 132 (230)
T PRK08533 62 LTTTEFIKQMMS-LGYDIN-------KKLISGKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN 132 (230)
T ss_pred CCHHHHHHHHHH-hCCchH-------HHhhcCcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC
Confidence 245555443321 122111 11111011111111 2367776666665554433 69999999999999
Q ss_pred --CHHHHHHHHHHHHHhHhCCcEEEEEccCHhH
Q psy6612 173 --DPILSQIIWDRLKEMALNGKTIIITTHYIEE 203 (291)
Q Consensus 173 --D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~ 203 (291)
|+...+.+.+.++++++.|.|+++ ||+...
T Consensus 133 ~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~ 164 (230)
T PRK08533 133 DASEVAVNDLMAFFKRISSLNKVIIL-TANPKE 164 (230)
T ss_pred CcchHHHHHHHHHHHHHHhCCCEEEE-Eecccc
Confidence 888889999999999877776655 555544
No 431
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=1.3e-14 Score=154.51 Aligned_cols=82 Identities=23% Similarity=0.186 Sum_probs=76.5
Q ss_pred CCCCcCcCChhHHHHHHHHHHHhc----------CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 135 AKKIVGALSGGQQRRISFAVSLLH----------NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 135 ~~~~~~~LSgGqkQrv~iAral~~----------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.++++..|||||++||+||+||+. +|++||+||||+|||+.+...+++.|..+...|++|+||||++++.
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 467899999999999999999986 7999999999999999999999999999987789999999999999
Q ss_pred hh-hCeEEEEeCC
Q psy6612 205 KG-AHNIGLMRDD 216 (291)
Q Consensus 205 ~~-~d~i~~l~~G 216 (291)
.. ||+|.|++.+
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 76 9999999764
No 432
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.55 E-value=6.9e-15 Score=146.77 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=71.4
Q ss_pred CCcCcCChhHHHHHHHHHHHh----------cCCCEEEEcccC-CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 137 KIVGALSGGQQRRISFAVSLL----------HNPKLLILDEPT-VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAral~----------~~p~llllDEPt-sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
.++.+|||||+||++||+||+ .+|+++|||||| ++||+.++..+.+.|.++ .|.|||++||+.+...
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~~ 541 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDPQ 541 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhchh
Confidence 356789999999999999988 599999999998 789999999999999998 5789999999987777
Q ss_pred hhCeEEEEeC-CEE
Q psy6612 206 GAHNIGLMRD-DQY 218 (291)
Q Consensus 206 ~~d~i~~l~~-G~i 218 (291)
.||++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7999999986 543
No 433
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.54 E-value=3.3e-14 Score=137.85 Aligned_cols=167 Identities=19% Similarity=0.231 Sum_probs=109.7
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------------CeEEEEcCCC
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------------SDIGYMPQEL 93 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------------~~ig~v~q~~ 93 (291)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|+.- +.+.++.+..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45689999 99999999999999999999999999999999999998865432 1244554321
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCCh-hHHHHHHHHHHHhcCCCEEEEccc--CC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSG-GQQRRISFAVSLLHNPKLLILDEP--TV 170 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg-GqkQrv~iAral~~~p~llllDEP--ts 170 (291)
. ++.+-+.- ....-.+.|.+..-|-+-. --..+++- -|-+| .|+ +.+.|| |+
T Consensus 224 ~-----~~~~r~~~---------~~~a~~iAEyfr~~g~~Vl-l~~Dsltr~A~A~r-Eis---------l~~ge~P~~~ 278 (438)
T PRK07721 224 Q-----PALMRIKG---------AYTATAIAEYFRDQGLNVM-LMMDSVTRVAMAQR-EIG---------LAVGEPPTTK 278 (438)
T ss_pred C-----CHHHHHHH---------HHHHHHHHHHHHHCCCcEE-EEEeChHHHHHHHH-HHH---------HhcCCCCccc
Confidence 1 11111100 0001112233332232210 01112221 11111 111 123554 78
Q ss_pred CCCHHHHHHHHHHHHHhHh--CCc-----EEEEEccCHhHHhhhCeEEEEeCCEEEEEech
Q psy6612 171 GLDPILSQIIWDRLKEMAL--NGK-----TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~--~g~-----tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~ 224 (291)
|+||.....+.+++.++.. .|. ||++.+||+++ ..||++..|.+|+++.++..
T Consensus 279 G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~l 338 (438)
T PRK07721 279 GYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQL 338 (438)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccH
Confidence 9999999999999999873 575 99999999995 45999999999999988754
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.52 E-value=1.2e-14 Score=124.15 Aligned_cols=150 Identities=22% Similarity=0.215 Sum_probs=97.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (291)
.++|+|+||||||||++.+.+.+.+ .| +. ..+|+.|+......... +. ....... ....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~-------~~g~~~~~~~~~~~~~~-----~~--~~~~~~~-----~~~~ 60 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YK-------VGGFYTEEVREGGKRIG-----FK--IIDLDTG-----EEGI 60 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-Ce-------EEEEEcHHHHhcCCccc-----eE--EEEcCCC-----CeEE
Confidence 4789999999999999999887654 45 22 14555553211111111 00 0000000 0112
Q ss_pred HHHcCC-CC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc--CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCH
Q psy6612 127 LKLLEL-PP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP--TVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201 (291)
Q Consensus 127 l~~~~l-~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP--tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~ 201 (291)
+...+. .. ..+....+|++++-+..+++..+.+|+++++||| +.++|+. +.+.+.++.+.+.++|+++|+-
T Consensus 61 l~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 61 LARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred ccccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHhCCCeEEEEECch
Confidence 233333 21 2455678999999999999999999999999994 4455543 5566666655689999999995
Q ss_pred hHHhhhCeEEEEeCCEEEEE
Q psy6612 202 EEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 202 ~~~~~~d~i~~l~~G~i~~~ 221 (291)
.....+|++..+.+|++..-
T Consensus 137 ~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 137 SVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred hhHHHHHHHhccCCcEEEEE
Confidence 44456999999999988543
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.52 E-value=1.1e-13 Score=118.43 Aligned_cols=143 Identities=15% Similarity=-0.015 Sum_probs=96.9
Q ss_pred EEEEECCCCccHHHHHHHH-HcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCI-VGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i-~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~ 125 (291)
++.|.||.|+|||||.--+ ....+. | ..+.|+.-+ .|..+.+..... ++.+.. +
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--------g---~~v~~~s~e------~~~~~~~~~~~~-~g~~~~-------~ 55 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--------G---EPGLYVTLE------ESPEELIENAES-LGWDLE-------R 55 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--------C---CcEEEEECC------CCHHHHHHHHHH-cCCChH-------H
Confidence 3678999999999988543 322221 2 123344321 244444433222 233211 1
Q ss_pred HHHHcCCCC-CCCCcCcCChhHHH------HHHHHHHHhcCCCEEEEcccCCCCC---HHHHHHHHHHHHHhHhCCcEEE
Q psy6612 126 ILKLLELPP-AKKIVGALSGGQQR------RISFAVSLLHNPKLLILDEPTVGLD---PILSQIIWDRLKEMALNGKTII 195 (291)
Q Consensus 126 ~l~~~~l~~-~~~~~~~LSgGqkQ------rv~iAral~~~p~llllDEPtsgLD---~~~~~~i~~~l~~l~~~g~tii 195 (291)
+...+... .+.++..+|+|++| +...+.+...+|+++++|||++.+| ...+..+.+++..+++.|.|+|
T Consensus 56 -l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi 134 (187)
T cd01124 56 -LEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTL 134 (187)
T ss_pred -HHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEE
Confidence 22234322 46788899999998 5555555678999999999999999 8888889999999987899999
Q ss_pred EEccCHhH---------Hhh-hCeEEEEeC
Q psy6612 196 ITTHYIEE---------AKG-AHNIGLMRD 215 (291)
Q Consensus 196 ~~tHd~~~---------~~~-~d~i~~l~~ 215 (291)
+++|+... +.. ||.++.|+.
T Consensus 135 ~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 135 LTSEQSGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred EEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence 99998765 444 888888863
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.51 E-value=4.6e-13 Score=118.86 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=88.8
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCEecCeEEEEcCCCC-------CCCCCCH
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQISDIGYMPQELA-------LHGELSI 101 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~~ig~v~q~~~-------l~~~ltv 101 (291)
+...+-+|++|+.++|++++|.||||+||||+++++++..-.. .|- |||-+.. +|..+..
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------------~vpa~~~~i~~~~~i~~~~~~ 82 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------------DVPAKSMRLSLVDRIFTRIGA 82 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------------ccCccccEeccccEEEEecCc
Confidence 3567899999999999999999999999999999998864221 111 1221110 0111111
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChh--HHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHH
Q psy6612 102 RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG--QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179 (291)
Q Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG--qkQrv~iAral~~~p~llllDEPtsgLD~~~~~~ 179 (291)
.|++ ...+|.= +-+++.-....+.+|.++|+|||++|+|+.....
T Consensus 83 ~d~~---------------------------------~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~ 129 (218)
T cd03286 83 RDDI---------------------------------MKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYA 129 (218)
T ss_pred cccc---------------------------------ccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHH
Confidence 1111 1112221 2233333333357899999999999999999988
Q ss_pred HHHH-HHHhHhC-CcEEEEEccCHhHHhh
Q psy6612 180 IWDR-LKEMALN-GKTIIITTHYIEEAKG 206 (291)
Q Consensus 180 i~~~-l~~l~~~-g~tii~~tHd~~~~~~ 206 (291)
+... ++.+.+. +.++|++||+++.+..
T Consensus 130 la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 130 IAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 8888 6677655 8999999999999865
No 437
>PRK10869 recombination and repair protein; Provisional
Probab=99.51 E-value=5.9e-14 Score=140.10 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=69.3
Q ss_pred cCChhHHHHHHHHHHHhc----CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCC
Q psy6612 141 ALSGGQQRRISFAVSLLH----NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDD 216 (291)
Q Consensus 141 ~LSgGqkQrv~iAral~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G 216 (291)
.|||||+||++||++++. +|+++|||||++|||+.+...+.+.|+++.+ +.+||+|||++..+..||+.+.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhCCEEEEEecc
Confidence 379999999999999997 5899999999999999999999999999964 68999999999988779999999874
No 438
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.50 E-value=3.8e-14 Score=123.42 Aligned_cols=67 Identities=31% Similarity=0.429 Sum_probs=55.4
Q ss_pred CcCcCChhHHHHHHHHHHHhcCC---CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 138 IVGALSGGQQRRISFAVSLLHNP---KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 138 ~~~~LSgGqkQrv~iAral~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
+...+|.|+||.+.++.++...+ .++++|||-++|+|..++.+++.|.+..+.+.-+|++||.+..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 34567999999999998888776 89999999999999999999999988876578999999998754
No 439
>PRK03918 chromosome segregation protein; Provisional
Probab=99.50 E-value=6.4e-14 Score=146.74 Aligned_cols=80 Identities=29% Similarity=0.302 Sum_probs=71.5
Q ss_pred CCCcCcCChhHHH------HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCe
Q psy6612 136 KKIVGALSGGQQR------RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHN 209 (291)
Q Consensus 136 ~~~~~~LSgGqkQ------rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~ 209 (291)
++++..|||||+| |++||++++.+|+++||||||++||+..+..+.++|..+...+.+||++||+++....||+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCe
Confidence 4788899999999 5556668889999999999999999999999999999987667899999999987666999
Q ss_pred EEEEeC
Q psy6612 210 IGLMRD 215 (291)
Q Consensus 210 i~~l~~ 215 (291)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999984
No 440
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.50 E-value=3.8e-13 Score=135.46 Aligned_cols=133 Identities=23% Similarity=0.393 Sum_probs=106.8
Q ss_pred CCCCHHHHHHHhccccCCChHH---HHHHHHH------HHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcC--CCEE
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQ---IETRSKE------ILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHN--PKLL 163 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~---~~~~~~~------~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~--p~ll 163 (291)
..|++.+-..|+..+. .+..+ .+..+.+ .|-.+||.. ++|...+|||||.||+-||..+-.. -=++
T Consensus 427 ~~msi~~~~~f~~~l~-l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY 505 (935)
T COG0178 427 SEMSIADALEFFENLK-LSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 505 (935)
T ss_pred hhccHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence 3578888877765443 11111 1111222 344568876 5899999999999999999998665 3478
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVES 230 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~~ 230 (291)
+||||+.||-+.-..++++.|++|++.|-|+|+|.||.+.+..||+++=| +.|+|+++|+++++.+.
T Consensus 506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence 99999999999999999999999998899999999999999999999876 56799999999998765
No 441
>PRK01156 chromosome segregation protein; Provisional
Probab=99.45 E-value=6.2e-13 Score=139.79 Aligned_cols=78 Identities=27% Similarity=0.282 Sum_probs=69.2
Q ss_pred CCcCcCChhHHHHHHH------HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hC-C-cEEEEEccCHhHHhhh
Q psy6612 137 KIVGALSGGQQRRISF------AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LN-G-KTIIITTHYIEEAKGA 207 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~i------Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~-g-~tii~~tHd~~~~~~~ 207 (291)
.++..|||||++|++| |++|+.+|++++|||||++||+..+..+.++|.... .. + .|||++|||.+.+..|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 4688999999999975 599999999999999999999999999999998654 33 3 4899999999988779
Q ss_pred CeEEEEe
Q psy6612 208 HNIGLMR 214 (291)
Q Consensus 208 d~i~~l~ 214 (291)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 442
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.45 E-value=3.4e-13 Score=130.16 Aligned_cols=163 Identities=18% Similarity=0.144 Sum_probs=120.3
Q ss_pred EEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 20 VAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 20 l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
++.+.++..|. +..+++.+ |.+.+|+.++|+|+||+|||||+++|++..+|+.|.|.+.|+.-
T Consensus 131 ~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg--------------- 194 (432)
T PRK06793 131 FEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG--------------- 194 (432)
T ss_pred hheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc---------------
Confidence 34456666664 45788885 99999999999999999999999999999999988777666431
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHh-------cCCCEEEEcccC
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLL-------HNPKLLILDEPT 169 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~-------~~p~llllDEPt 169 (291)
.++.|++..... .-++.. .=....+.|.|+|+|++.+.+.+ .++-++++|+||
T Consensus 195 ~ev~e~~~~~l~------------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 195 REVKDFIRKELG------------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred ccHHHHHHHHhh------------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchH
Confidence 367766542111 111211 11345678999999999999887 789999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
...|+. +++...+.+.-..|.+..+.||....+++|-. ..+|.|.+-
T Consensus 257 r~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~ 303 (432)
T PRK06793 257 RFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGI 303 (432)
T ss_pred HHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEE
Confidence 999986 66666776765458888888996555565443 467877653
No 443
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.43 E-value=4.7e-13 Score=142.57 Aligned_cols=81 Identities=27% Similarity=0.263 Sum_probs=73.5
Q ss_pred CCCCcCcCChhHHHHHHHHHHHhc--------CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh
Q psy6612 135 AKKIVGALSGGQQRRISFAVSLLH--------NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206 (291)
Q Consensus 135 ~~~~~~~LSgGqkQrv~iAral~~--------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~ 206 (291)
.++++..|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+++.|+||+||||..+...+
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 358899999999999999999996 899999999999999999999999999998789999999998887777
Q ss_pred -hCeEEEEeC
Q psy6612 207 -AHNIGLMRD 215 (291)
Q Consensus 207 -~d~i~~l~~ 215 (291)
..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 567777765
No 444
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.40 E-value=1.9e-12 Score=111.01 Aligned_cols=174 Identities=19% Similarity=0.167 Sum_probs=108.1
Q ss_pred EeeEeeee--EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 32 HVVLKGLN--LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 32 ~~~L~~vs--l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
.++++++- |++.+- |+.|+|.||+||||||..|+-....+ .| ++++...-.+. ++ -...+++.+.
T Consensus 23 lPa~r~l~~~LeF~ap-IT~i~GENGsGKSTLLEaiA~~~~~n~aG----g~~n~~~~~~~-s~------s~l~~~~k~~ 90 (233)
T COG3910 23 LPAFRHLEERLEFRAP-ITFITGENGSGKSTLLEAIAAGMGFNAAG----GGKNFKGELDA-SH------SALVDYAKLH 90 (233)
T ss_pred chHHHhhhhhccccCc-eEEEEcCCCccHHHHHHHHHhhccccccC----CCcCcCccccc-cc------chHHHhHHHh
Confidence 44555543 566554 99999999999999999987554322 22 11211100000 00 0122233221
Q ss_pred cccc---C-CChHHHHHHHHHHHHHcCCC--CCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHH
Q psy6612 109 GYMF---D-MTDDQIETRSKEILKLLELP--PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182 (291)
Q Consensus 109 ~~~~---~-~~~~~~~~~~~~~l~~~~l~--~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~ 182 (291)
..-. + .-+.+.--.+...++.+.-+ ...+.....|.||-=---+.+.+. +--++|||||-++|.|.-+-.++.
T Consensus 91 ~~~k~~~g~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella 169 (233)
T COG3910 91 KRKKPPIGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLA 169 (233)
T ss_pred hcCCCCcceEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHH
Confidence 1000 0 00000000111122222111 124556789999987777777664 558999999999999999999999
Q ss_pred HHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 183 RLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 183 ~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
.|+++++.|.-+||+||.+=++.. -.+|+-++.+.+
T Consensus 170 ~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 170 ILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred HHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 999999999999999999988877 678999988754
No 445
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.38 E-value=7.3e-13 Score=141.54 Aligned_cols=78 Identities=23% Similarity=0.252 Sum_probs=69.8
Q ss_pred CCCcCcCChhHHHHHHHHHHHh----cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 136 KKIVGALSGGQQRRISFAVSLL----HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 136 ~~~~~~LSgGqkQrv~iAral~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
+.++..|||||+||++||++++ .+|+++||||||++||+.++..+.++|..+++ +.++|||||++..+..||+++
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~~~~d~~~ 1162 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTMEVADQLY 1162 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHHHHhhhHe
Confidence 4678899999999999999985 67799999999999999999999999999864 478999999999887799986
Q ss_pred EEe
Q psy6612 212 LMR 214 (291)
Q Consensus 212 ~l~ 214 (291)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 653
No 446
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.36 E-value=1.1e-11 Score=129.06 Aligned_cols=67 Identities=21% Similarity=0.264 Sum_probs=59.8
Q ss_pred hcCCCEEEEcccCCCC-CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh----------hhCeEEEEeCCEEEEEec
Q psy6612 157 LHNPKLLILDEPTVGL-DPILSQIIWDRLKEMALNGKTIIITTHYIEEAK----------GAHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 157 ~~~p~llllDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~----------~~d~i~~l~~G~i~~~~~ 223 (291)
..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++.+. .|++.++|.+|++...+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 799999999999999888999999999999874 499999999998765543
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.36 E-value=2.8e-12 Score=119.50 Aligned_cols=145 Identities=18% Similarity=0.211 Sum_probs=97.3
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChH
Q psy6612 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117 (291)
Q Consensus 38 vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 117 (291)
+++.++.|+.++|.||+|||||||+++|++++++..|.+.+... ..+ ...- .|. ......
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~--~El---------~~~~---~~~--~~l~~~---- 196 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDT--REI---------FLPH---PNY--VHLFYS---- 196 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCc--ccc---------CCCC---CCE--EEEEec----
Confidence 55778899999999999999999999999999998887766321 110 0000 000 000000
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEE
Q psy6612 118 QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197 (291)
Q Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~ 197 (291)
.........| ..-.++.+|-++|+++++|||.+ .+.+++++.+...+.+++.+
T Consensus 197 ----------------~~~~~~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T 249 (308)
T TIGR02788 197 ----------------KGGQGLAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITT 249 (308)
T ss_pred ----------------CCCCCcCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEE
Confidence 0000011112 22356778899999999999996 34566777765333467999
Q ss_pred ccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 198 THYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 198 tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|..+.....+|+..|..|++.+.+.+.+...
T Consensus 250 ~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 250 LHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred EeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 99999666699999998888888777766553
No 448
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=2.1e-12 Score=140.50 Aligned_cols=70 Identities=26% Similarity=0.308 Sum_probs=63.4
Q ss_pred CCcCcCChhHHH------HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-----CCcEEEEEccCHhHHh
Q psy6612 137 KIVGALSGGQQR------RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-----NGKTIIITTHYIEEAK 205 (291)
Q Consensus 137 ~~~~~LSgGqkQ------rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~tHd~~~~~ 205 (291)
...+.||||||| |++|||||+.+|++|+|||||+|||+.+...+.+.|..+.. .|.|||++|||++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 345789999999 99999999999999999999999999999999999988741 3789999999999986
Q ss_pred h
Q psy6612 206 G 206 (291)
Q Consensus 206 ~ 206 (291)
.
T Consensus 1275 ~ 1275 (1311)
T TIGR00606 1275 L 1275 (1311)
T ss_pred H
Confidence 4
No 449
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.30 E-value=5.4e-12 Score=123.45 Aligned_cols=149 Identities=21% Similarity=0.361 Sum_probs=99.8
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
++++.++.+++|++++++|||||||||++..|++.+.+..|. .+++++.++. ...++.|++.+++..++
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~--------~kV~LI~~Dt---~RigA~EQLr~~AeilG 313 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA--------SKVALLTTDS---YRIGGHEQLRIYGKILG 313 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC--------CeEEEEeCCc---cchhHHHHHHHHHHHhC
Confidence 566778888899999999999999999999999988776663 2478888886 34689999998877766
Q ss_pred CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHH-HHHHHHHHhcCC-----CEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 114 MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQR-RISFAVSLLHNP-----KLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQ-rv~iAral~~~p-----~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
.+........+......++.. ....+.+.+.+++- .+.-+.+++.++ .+|+||.++.+ ..+.+.++.
T Consensus 314 Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~~l~~i~~~ 387 (484)
T PRK06995 314 VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------DTLNEVVQA 387 (484)
T ss_pred CCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------HHHHHHHHH
Confidence 543322333334445556644 23455664433332 223344444454 68999999887 345555566
Q ss_pred hHhCCcEEEEEcc
Q psy6612 187 MALNGKTIIITTH 199 (291)
Q Consensus 187 l~~~g~tii~~tH 199 (291)
+...+.+=++.|+
T Consensus 388 f~~~~~~g~IlTK 400 (484)
T PRK06995 388 YRGPGLAGCILTK 400 (484)
T ss_pred hccCCCCEEEEeC
Confidence 6545555555565
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.30 E-value=1.3e-11 Score=101.94 Aligned_cols=130 Identities=22% Similarity=0.196 Sum_probs=80.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (291)
+++|.||||+||||+++.+++...+..|.+. |+..+.... ...++... . .....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~----------~~~~e~~~~---~~~~~~~~----~---------~~~~~ 54 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVV----------YVDIEEEIE---ELTERLIG----E---------SLKGA 54 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEE----------EEECCcchH---HHHHHHhh----h---------hhccc
Confidence 4789999999999999999998876545443 333332211 11111100 0 00000
Q ss_pred HHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC----------CCCHHHHHHHHHHHHHhHhCCcEEEE
Q psy6612 127 LKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV----------GLDPILSQIIWDRLKEMALNGKTIII 196 (291)
Q Consensus 127 l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts----------gLD~~~~~~i~~~l~~l~~~g~tii~ 196 (291)
.+.+. .........+.++.++...+++...+|+++++|||++ +.|......+.+++...++.+.|+++
T Consensus 55 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~ 132 (165)
T cd01120 55 LDNLI--IVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIF 132 (165)
T ss_pred cccEE--EEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEE
Confidence 00000 0112223445666778889999999999999999994 45555566666666666556899999
Q ss_pred EccCHhHH
Q psy6612 197 TTHYIEEA 204 (291)
Q Consensus 197 ~tHd~~~~ 204 (291)
++|.....
T Consensus 133 ~~~~~~~~ 140 (165)
T cd01120 133 TLQVPSGD 140 (165)
T ss_pred EEecCCcc
Confidence 99987544
No 451
>PRK02224 chromosome segregation protein; Provisional
Probab=99.28 E-value=8.6e-12 Score=130.90 Aligned_cols=80 Identities=31% Similarity=0.339 Sum_probs=70.1
Q ss_pred CCcCcCChhHHH------HHHHHHHHhcC-----C-CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCc-EEEEEccCHhH
Q psy6612 137 KIVGALSGGQQR------RISFAVSLLHN-----P-KLLILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITTHYIEE 203 (291)
Q Consensus 137 ~~~~~LSgGqkQ------rv~iAral~~~-----p-~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~-tii~~tHd~~~ 203 (291)
.++..||||||| |+++|++++.+ | +++|+||||++||+..+..+.++|..+...|. +||++|||.+.
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~ 856 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL 856 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH
Confidence 346799999999 89999999864 3 67999999999999999999999999876564 89999999999
Q ss_pred HhhhCeEEEEeCC
Q psy6612 204 AKGAHNIGLMRDD 216 (291)
Q Consensus 204 ~~~~d~i~~l~~G 216 (291)
+..||+++.|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 9779999999753
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.27 E-value=4.8e-11 Score=106.50 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=87.0
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHH-cCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIV-GRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI 119 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~-gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~ 119 (291)
-+++|.++.|.|++|||||||...++ +..+ .| .++.|+..+. +..+.+.-.. .+++.-.+.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g---------~~~~y~~~e~------~~~~~~~~~~-~~g~~~~~~ 82 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK--QG---------KKVYVITTEN------TSKSYLKQME-SVKIDISDF 82 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh--CC---------CEEEEEEcCC------CHHHHHHHHH-HCCCChhHH
Confidence 58899999999999999999998764 3222 12 2344544432 3333222111 122211110
Q ss_pred HHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhc--CCCEEEEcccCCC---CCHHHHHHHHHHHHHhHhCCcEE
Q psy6612 120 ETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLH--NPKLLILDEPTVG---LDPILSQIIWDRLKEMALNGKTI 194 (291)
Q Consensus 120 ~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~--~p~llllDEPtsg---LD~~~~~~i~~~l~~l~~~g~ti 194 (291)
.....+..+.+ .-......|.++++.+..++.++. +|+++++||||+. .|......+++.++.+++.|.|+
T Consensus 83 --~~~g~l~i~~~--~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tv 158 (234)
T PRK06067 83 --FLWGYLRIFPL--NTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTI 158 (234)
T ss_pred --HhCCCceEEec--cccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEE
Confidence 00001111111 112234567899999999999987 9999999999954 55555566666677777778999
Q ss_pred EEEccCHhH
Q psy6612 195 IITTHYIEE 203 (291)
Q Consensus 195 i~~tHd~~~ 203 (291)
++++|+...
T Consensus 159 llt~~~~~~ 167 (234)
T PRK06067 159 LITLHPYAF 167 (234)
T ss_pred EEEecCCcC
Confidence 999998654
No 453
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.27 E-value=8.7e-12 Score=133.57 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=70.0
Q ss_pred CCCcCcCChhHHHHHHHHHHHhc----CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 136 KKIVGALSGGQQRRISFAVSLLH----NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 136 ~~~~~~LSgGqkQrv~iAral~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
.+++..||||||++++||++|+. .|+++|||||+++||+.++..+.++|.++.. +.++|++||+...+..||+++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~~~~d~~~ 1147 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMIEYADRAI 1147 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHHhcceeE
Confidence 35567899999999999999985 7899999999999999999999999999864 478999999998777799997
Q ss_pred EEeC
Q psy6612 212 LMRD 215 (291)
Q Consensus 212 ~l~~ 215 (291)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7654
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.19 E-value=1.1e-10 Score=102.12 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=74.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~ 125 (291)
++.|.||+||||||+++.+++.+.+. .|.|.....++ -|..+.. .+ + ...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~---E~~~~~~-----~~------~---i~q------------ 53 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI---EFVHESK-----RS------L---INQ------------ 53 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc---cccccCc-----cc------e---eee------------
Confidence 78999999999999999988887643 56655433221 1111100 00 0 000
Q ss_pred HHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 126 ILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 126 ~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
..++. ....++. +++++|.++|+++++|||. |++....+ .+.+..|..++.++|..+...
T Consensus 54 --~~vg~-----~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 54 --REVGL-----DTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred --cccCC-----CccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcHHH
Confidence 00010 0111221 5889999999999999996 65543332 234456889999999998776
Q ss_pred hhCeEEEEe
Q psy6612 206 GAHNIGLMR 214 (291)
Q Consensus 206 ~~d~i~~l~ 214 (291)
.++|++.+.
T Consensus 114 ~~~Rl~~l~ 122 (198)
T cd01131 114 TIDRIIDVF 122 (198)
T ss_pred HHhHHHhhc
Confidence 689987774
No 455
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.18 E-value=1.5e-11 Score=119.28 Aligned_cols=50 Identities=24% Similarity=0.388 Sum_probs=46.5
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc-EEEECCEec
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG-TIKLSFRQI 83 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~ 83 (291)
..+|++|||++++||+++|+|||||||||||+ +|+..|++| +|.++|.++
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 35899999999999999999999999999999 788888888 799999876
No 456
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.13 E-value=4.9e-11 Score=103.67 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=72.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (291)
++||.||||||||||.++|++++ ..|. +.+++++.. +..++..+........+..+.....+...+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~----------~~v~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK----------VVIISQDSY-YKDLSHEELEERKNNNYDHPDAFDFDLLISH 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC----------eEEEEeccc-ccccccccHHHhccCCCCCCCcccHHHHHHH
Confidence 58999999999999999999987 2333 334444432 2222333332222222222222223344456
Q ss_pred HHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 127 LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 127 l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
+..+.... .+.+..++|.|++++..+ .+..|+++|+|.|+.+.++.
T Consensus 68 l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 68 LQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 66655543 567888999999887655 57889999999999999873
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.12 E-value=3.5e-10 Score=101.41 Aligned_cols=131 Identities=24% Similarity=0.376 Sum_probs=82.7
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC-Eec---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF-RQI---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g-~~~---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
|.+..|+||.|+|||||.-.++-- ...|.=++.+ ... .++-|+.- ..+..+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~--va~G~~~~g~~~~~~~~~~Vlyi~~---------------------Ed~~~~i~ 57 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALA--MALGKNLFGGGLKVTEPGRVVYLSA---------------------EDPREEIH 57 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHH--HhcCccccCCccccCCCceEEEEEC---------------------CCCHHHHH
Confidence 678899999999999998776521 1223211110 000 11222221 11223445
Q ss_pred HHHHHHHHHcCCCCC-CCCcCcCChhHHHHHHHHH----------------HHhcCCCEEEEcccCCC------CCHHHH
Q psy6612 121 TRSKEILKLLELPPA-KKIVGALSGGQQRRISFAV----------------SLLHNPKLLILDEPTVG------LDPILS 177 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~-~~~~~~LSgGqkQrv~iAr----------------al~~~p~llllDEPtsg------LD~~~~ 177 (291)
+++..+...+++... ++.+. .+|+.|++.+++ +...+|+++++| |+++ +|+...
T Consensus 58 ~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~ 134 (239)
T cd01125 58 RRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAM 134 (239)
T ss_pred HHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHH
Confidence 566666666655332 22221 256666665554 446899999999 8764 799999
Q ss_pred HHHHHHHHHhHh-CCcEEEEEccCH
Q psy6612 178 QIIWDRLKEMAL-NGKTIIITTHYI 201 (291)
Q Consensus 178 ~~i~~~l~~l~~-~g~tii~~tHd~ 201 (291)
..+++.|.++++ .|.||++++|..
T Consensus 135 ~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 135 DAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHHHHHHHHHHHHhCCEEEEEeccC
Confidence 999999999975 489999999986
No 458
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.08 E-value=2.2e-11 Score=120.09 Aligned_cols=151 Identities=20% Similarity=0.314 Sum_probs=93.5
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHH--HcCCCCCccEEEECCEec--------CeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCI--VGRNTLDAGTIKLSFRQI--------SDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i--~gl~~p~~G~I~~~g~~~--------~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
-+++|.++.|.||+|||||||..-+ .|...+.+.-+++....- ..+||-+++..- .+++.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~------~g~l~---- 86 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVD------EGKLF---- 86 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhh------cCceE----
Confidence 4789999999999999999999765 455544444454432210 112221111000 00000
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHH--HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 111 MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFA--VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iA--ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
....... .....+++.+++.. .++....+|+|++|||.|+ .+|...|+.. +..++.++++++.+
T Consensus 87 ~~~~~~~---~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L 153 (484)
T TIGR02655 87 ILDASPD---PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARL 153 (484)
T ss_pred EEecCch---hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHH
Confidence 0000000 00111233444433 4667788999999999999 5666665544 57788899999999
Q ss_pred HhCCcEEEEEccCHhH--------H-hh-hCeEEEEe
Q psy6612 188 ALNGKTIIITTHYIEE--------A-KG-AHNIGLMR 214 (291)
Q Consensus 188 ~~~g~tii~~tHd~~~--------~-~~-~d~i~~l~ 214 (291)
++.|.|+|++||+.+. + +. ||.|+.|+
T Consensus 154 ~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 154 KQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 8889999999999764 2 44 89999886
No 459
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=99.06 E-value=2.3e-09 Score=104.24 Aligned_cols=178 Identities=20% Similarity=0.197 Sum_probs=103.2
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+|...++.|.+...|..-+.+.....+ +... ...++..+...
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~--~~~~-~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEH--DLGE-EGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHH--Hhcc-cccceEEEEEE
Confidence 46799999 99999999999999999999999999999999888776655432110000000 0000 00000000000
Q ss_pred ccCCChHH------HHHHHHHHHHHcCCCCCCCCcCcCCh-hHHHHHHHHHHHhcCCCEEEEccc--CCCCCHHHHHHHH
Q psy6612 111 MFDMTDDQ------IETRSKEILKLLELPPAKKIVGALSG-GQQRRISFAVSLLHNPKLLILDEP--TVGLDPILSQIIW 181 (291)
Q Consensus 111 ~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~LSg-GqkQrv~iAral~~~p~llllDEP--tsgLD~~~~~~i~ 181 (291)
....+.-. ..-.+.|.+...|-+-. -.+.+|+- -|-+| .++ +.+.|| +.|.||.....+.
T Consensus 226 ~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vl-l~~DslTr~A~A~R-Eis---------l~~ge~P~~~Gypp~~~~~l~ 294 (440)
T TIGR01026 226 TSDQSPLLRLKGAYVATAIAEYFRDQGKDVL-LLMDSVTRFAMAQR-EIG---------LAAGEPPATKGYTPSVFSTLP 294 (440)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE-EEEeChHHHHHHHH-HHH---------HhcCCCCcccccChhHHHHHH
Confidence 00111100 01112222222232210 01122321 12222 222 345675 5699999999999
Q ss_pred HHHHHhHhCCc-------EEEEEccCHhHHhhhCeEEEEeCCEEEEEech
Q psy6612 182 DRLKEMALNGK-------TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 182 ~~l~~l~~~g~-------tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~ 224 (291)
+++.+....+. ||++.+||+.+ ..||++..+.+|+++.+...
T Consensus 295 ~l~ERag~~~~GSIT~i~tVl~~~~d~~d-pi~d~~~~i~dG~ivLsr~l 343 (440)
T TIGR01026 295 RLLERAGASGKGSITAFYTVLVEGDDMNE-PIADSVRGILDGHIVLSRAL 343 (440)
T ss_pred HHHHHhccCCCCeeeEEEEEEccCcCCCc-chhhhhccccceEEEEecch
Confidence 99999875566 88999999832 13899999999999876543
No 460
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.05 E-value=2.9e-09 Score=84.39 Aligned_cols=118 Identities=25% Similarity=0.278 Sum_probs=80.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCc-cEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDA-GTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~-G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~ 122 (291)
++..+.|+||+|+||||+++.++..+.... +-+.++...... .+..+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~----------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE-------------EVLDQLL----------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc-------------cCHHHHH-----------------
Confidence 367899999999999999999999987654 344443322100 0110000
Q ss_pred HHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHH------HHHhHhCCcEEEE
Q psy6612 123 SKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR------LKEMALNGKTIII 196 (291)
Q Consensus 123 ~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~------l~~l~~~g~tii~ 196 (291)
...........++++..+..+++|-..+|.++++||+..-.+.......... .......+..+|+
T Consensus 51 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 121 (148)
T smart00382 51 ---------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121 (148)
T ss_pred ---------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEE
Confidence 0011233455788888888899988888999999999999999888776641 2222234678888
Q ss_pred EccC
Q psy6612 197 TTHY 200 (291)
Q Consensus 197 ~tHd 200 (291)
++|.
T Consensus 122 ~~~~ 125 (148)
T smart00382 122 TTND 125 (148)
T ss_pred EeCC
Confidence 8884
No 461
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=99.03 E-value=2.7e-10 Score=110.24 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=66.4
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE---ECCEec---------------CeEEEEcCC
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK---LSFRQI---------------SDIGYMPQE 92 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~---~~g~~~---------------~~ig~v~q~ 92 (291)
+..+++++ |++.+|++++|+|+||||||||+++|+|+.+++.+.+- .+++++ ..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 99999999999999999999999999999998864332 333222 248999999
Q ss_pred CCCCCCCCHHHHHHHhcccc
Q psy6612 93 LALHGELSIRETFRYYGYMF 112 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~ 112 (291)
...+..+++.+++.+.+.++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYY 240 (434)
T ss_pred CChhhhHHHHHHHHHHHHHh
Confidence 99999999999987655443
No 462
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=3.8e-10 Score=107.52 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=57.4
Q ss_pred cCChhHHHHHHHHHHHhc---------CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 141 ALSGGQQRRISFAVSLLH---------NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 141 ~LSgGqkQrv~iAral~~---------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
.+|.||||++.||.+|+. +|++||||||+++||+..+..+++.|.+. |.+++++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence 589999999999999999 99999999999999999999999999864 679999999987753
No 463
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.2e-09 Score=115.40 Aligned_cols=80 Identities=31% Similarity=0.364 Sum_probs=71.7
Q ss_pred CCcCcCChhHHHHHHHHHHHh------cC--CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhC
Q psy6612 137 KIVGALSGGQQRRISFAVSLL------HN--PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAH 208 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAral~------~~--p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d 208 (291)
+++..|||||+=.++||.+|+ .+ -++++|||||..||+.+...++++|..+...+.+|++|||+-++...+|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 688999999999888777654 45 6999999999999999999999999999877899999999999998999
Q ss_pred eEEEEeCC
Q psy6612 209 NIGLMRDD 216 (291)
Q Consensus 209 ~i~~l~~G 216 (291)
.++.++..
T Consensus 891 ~~i~V~k~ 898 (908)
T COG0419 891 VRIRVKKD 898 (908)
T ss_pred eEEEEEec
Confidence 98888653
No 464
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.98 E-value=1.9e-10 Score=102.12 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~ 66 (291)
-+++|+++.|.||+|||||||...++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 58899999999999999999987554
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.97 E-value=8.9e-10 Score=95.19 Aligned_cols=74 Identities=24% Similarity=0.205 Sum_probs=56.1
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEEcCCC--CCCCCCCHHHHHHH
Q psy6612 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYMPQEL--ALHGELSIRETFRY 107 (291)
Q Consensus 36 ~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v~q~~--~l~~~ltv~enl~~ 107 (291)
+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..- ..+++++|.. ..++..+..+.+..
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHH
Confidence 335567899999999999999999999999999999999999876431 2355655543 34555677777655
Q ss_pred hc
Q psy6612 108 YG 109 (291)
Q Consensus 108 ~~ 109 (291)
..
T Consensus 96 ~l 97 (186)
T cd01130 96 AL 97 (186)
T ss_pred Hh
Confidence 43
No 466
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.96 E-value=5.3e-09 Score=109.51 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=89.7
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC-CCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~-~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
..+=+|+++. +.+.++.|.|||++||||+||.++-.. -..-| +|||-... .+++.+.+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G------------~~VPa~~a---~i~~~d~I----- 653 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG------------SFVPAESA---RIGIVDRI----- 653 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC------------Cceeccce---EecccCee-----
Confidence 3456777787 677899999999999999999986432 11112 12222110 01111111
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhc--CCCEEEEccc---CCCCCHHHHHHHHHHHH
Q psy6612 111 MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLH--NPKLLILDEP---TVGLDPILSQIIWDRLK 185 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~--~p~llllDEP---tsgLD~~~~~~i~~~l~ 185 (291)
+..+|- .+.....+|.-|.....++.+|-. ++.++|+||| |+.+|. ....+.++.
T Consensus 654 ----------------~triga--~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg--~aia~aile 713 (854)
T PRK05399 654 ----------------FTRIGA--SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG--LSIAWAVAE 713 (854)
T ss_pred ----------------eeccCc--ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh--HHHHHHHHH
Confidence 112222 234456688888888888888765 9999999999 999994 445666777
Q ss_pred HhHhC-CcEEEEEccCHhHHhhhC
Q psy6612 186 EMALN-GKTIIITTHYIEEAKGAH 208 (291)
Q Consensus 186 ~l~~~-g~tii~~tHd~~~~~~~d 208 (291)
.+.+. +.++|++||+.+....++
T Consensus 714 ~l~~~~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 714 YLHDKIGAKTLFATHYHELTELEE 737 (854)
T ss_pred HHHhcCCceEEEEechHHHHHHhh
Confidence 77755 589999999966655444
No 467
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.94 E-value=2.8e-09 Score=103.35 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=64.2
Q ss_pred eEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC---Eec-----------
Q psy6612 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF---RQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g---~~~----------- 83 (291)
.++.+++++.|. +..+++.++ ++.+|+.++|+||||||||||+++|+++.+|+.|.|.+.| +++
T Consensus 139 ~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~ 217 (450)
T PRK06002 139 AMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADN 217 (450)
T ss_pred CeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHh
Confidence 567888999994 578999996 9999999999999999999999999999999999998854 433
Q ss_pred --CeEEEEcCCCC
Q psy6612 84 --SDIGYMPQELA 94 (291)
Q Consensus 84 --~~ig~v~q~~~ 94 (291)
+.+++++|...
T Consensus 218 r~rtI~vV~qsd~ 230 (450)
T PRK06002 218 LKKAVAVVATSDE 230 (450)
T ss_pred hCCeEEEEEcCCC
Confidence 35899998653
No 468
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.88 E-value=8.4e-08 Score=100.16 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=45.7
Q ss_pred HHhcCCCEEEEcccCCCCC-HHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 155 SLLHNPKLLILDEPTVGLD-PILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.+..+|.++++|||...|| +..+..+.+.++.+++.|.+++++||+++++
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4567899999999999999 8999999999999988889999999999875
No 469
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.87 E-value=3.4e-09 Score=115.73 Aligned_cols=63 Identities=25% Similarity=0.453 Sum_probs=55.7
Q ss_pred CCCcCcCChhHHHHHH----HHHH--------HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCH
Q psy6612 136 KKIVGALSGGQQRRIS----FAVS--------LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201 (291)
Q Consensus 136 ~~~~~~LSgGqkQrv~----iAra--------l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~ 201 (291)
++.++.|||||||+++ +|++ +..+|++++|||||+|||+.++..++++|.++ +.++||+||.+
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4457899999999996 5755 55899999999999999999999999999988 68899999975
No 470
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.86 E-value=1.1e-08 Score=110.69 Aligned_cols=143 Identities=22% Similarity=0.259 Sum_probs=82.4
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHcCC-CCCccEEEECCEecCeEEEEcCCCCCCCCCCHHH-HHHHhccccCCC
Q psy6612 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTIKLSFRQISDIGYMPQELALHGELSIRE-TFRYYGYMFDMT 115 (291)
Q Consensus 38 vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~-~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~e-nl~~~~~~~~~~ 115 (291)
+++..+.++++||+|++|+|||||++++.+.+ ...+|.+++++..+....-.++.. +..+ +...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~------~~~~~~~~~-------- 265 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSA------NPDDYNMKL-------- 265 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccc------cccccchhH--------
Confidence 46778899999999999999999999996554 445888888653221111001100 0000 0000
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH---hCCc
Q psy6612 116 DDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA---LNGK 192 (291)
Q Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~---~~g~ 192 (291)
...++.+.++++..++ .+..+ ++.++| |..++-+++||+- |.. ..++.+.... ..|.
T Consensus 266 -~l~~~~l~~il~~~~~-----~~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~~~~~~~Gs 325 (1153)
T PLN03210 266 -HLQRAFLSEILDKKDI-----KIYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQTQWFGSGS 325 (1153)
T ss_pred -HHHHHHHHHHhCCCCc-----ccCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhhCccCCCCc
Confidence 0011223333333332 22222 556665 3456668888883 333 3344444432 3588
Q ss_pred EEEEEccCHhHHhh--hCeEEEEe
Q psy6612 193 TIIITTHYIEEAKG--AHNIGLMR 214 (291)
Q Consensus 193 tii~~tHd~~~~~~--~d~i~~l~ 214 (291)
+||++|||...+.. +|+++-+.
T Consensus 326 rIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 326 RIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred EEEEEeCcHHHHHhcCCCeEEEec
Confidence 99999999999854 68776664
No 471
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.86 E-value=1.1e-08 Score=84.26 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=75.7
Q ss_pred EEEECCCCccHHHHHHHHH--cCCCCCccEEEECCE----ecCeEEEEcCC-CCCCC-----------------CCCHHH
Q psy6612 48 YGLLGPSGCGKTTLLNCIV--GRNTLDAGTIKLSFR----QISDIGYMPQE-LALHG-----------------ELSIRE 103 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~--gl~~p~~G~I~~~g~----~~~~ig~v~q~-~~l~~-----------------~ltv~e 103 (291)
++++|++|||||||++.|+ +..++.+|++..... .... .+.+-+ |.+.. .++..+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 6899999999999999999 677777766422110 0000 111111 21110 011112
Q ss_pred HHHHhcccc--CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHH-----hcCCCEEEEcccCCCCCH
Q psy6612 104 TFRYYGYMF--DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSL-----LHNPKLLILDEPTVGLDP 174 (291)
Q Consensus 104 nl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral-----~~~p~llllDEPtsgLD~ 174 (291)
++....... ..........+...+..++..- ...+...+|++++++....... ...|+++ |+|++|.
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~ 156 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKG 156 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCC
Confidence 221111111 1111123334555666666432 2334667899988877666542 3456665 9999999
Q ss_pred HHHHHHHHHHHHh
Q psy6612 175 ILSQIIWDRLKEM 187 (291)
Q Consensus 175 ~~~~~i~~~l~~l 187 (291)
....++++.|.++
T Consensus 157 ~~~~~l~~~l~~~ 169 (170)
T cd01876 157 QGIDELRALIEKW 169 (170)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998765
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.84 E-value=1.4e-08 Score=96.06 Aligned_cols=122 Identities=22% Similarity=0.270 Sum_probs=75.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNT-LDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
.++.++.|.||+||||||+++++.+.+. +..|.|.....++. +. ++ +.. .....
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E---~~------~~------~~~--~~i~q-------- 174 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE---YV------HR------NKR--SLINQ-------- 174 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh---hh------cc------Ccc--ceEEc--------
Confidence 4678999999999999999999998765 34566554322211 00 00 000 00000
Q ss_pred HHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCH
Q psy6612 122 RSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201 (291)
Q Consensus 122 ~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~ 201 (291)
...+. + ..+ -.-++++||-++|+++++||+. |+.+....++ .+..|.+++.+.|-.
T Consensus 175 ------~evg~---~----~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 175 ------REVGL---D----TLS----FANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTN 230 (343)
T ss_pred ------cccCC---C----CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCC
Confidence 00010 0 011 1234778899999999999997 8887764443 345688999999987
Q ss_pred hHHhhhCeEEEE
Q psy6612 202 EEAKGAHNIGLM 213 (291)
Q Consensus 202 ~~~~~~d~i~~l 213 (291)
+.....+|++-|
T Consensus 231 ~~~~~~~Rl~~~ 242 (343)
T TIGR01420 231 SAAQTIERIIDV 242 (343)
T ss_pred CHHHHHHHHHHh
Confidence 666556666544
No 473
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.83 E-value=9.8e-08 Score=100.19 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=50.3
Q ss_pred HHHHHhcCCCEEEEcccCCCC-CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 152 FAVSLLHNPKLLILDEPTVGL-DPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++.+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 678889999999999999999 799999999999999888999999999999884
No 474
>PRK14079 recF recombination protein F; Provisional
Probab=98.80 E-value=7.9e-09 Score=97.99 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=60.1
Q ss_pred cCChhHHHHHHHHHHHh---------cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 141 ALSGGQQRRISFAVSLL---------HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 141 ~LSgGqkQrv~iAral~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
.+|+|||+++.+|+.|+ .+|++++||||+++||+..+..+.+.|.... .++|-+|+ ....||+++
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTE---APPGAALTL 336 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCC---CCCCCceEE
Confidence 48999999999999999 8999999999999999999999998886542 23333332 233489999
Q ss_pred EEeCCEEEE
Q psy6612 212 LMRDDQYIG 220 (291)
Q Consensus 212 ~l~~G~i~~ 220 (291)
.+.+|++.-
T Consensus 337 ~~~~~~~~~ 345 (349)
T PRK14079 337 RIEAGVFTP 345 (349)
T ss_pred EEeccEecC
Confidence 999987654
No 475
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.79 E-value=3.6e-08 Score=99.92 Aligned_cols=109 Identities=22% Similarity=0.236 Sum_probs=74.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccE--------EEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT--------IKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMT 115 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~--------I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~ 115 (291)
..+.++|+||||||||||+++|.+..++..|+ +.++|..+. .......+..+. . .
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~------------~d~~~i~~~llg-~----~ 236 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR------------WDPREVTNPLLG-S----V 236 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc------------CCHHHHhHHhcC-C----c
Confidence 45679999999999999999999988665443 555543220 000111121111 1 1
Q ss_pred hHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 116 DDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 116 ~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
.+.....+.+.++.+|+.. ....+.++||| +|+||| +..||+..+..+++.|.+
T Consensus 237 ~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 237 HDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred cHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 1222234555678888865 56788899999 999999 899999999999999976
No 476
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.79 E-value=1.5e-08 Score=98.48 Aligned_cols=112 Identities=25% Similarity=0.298 Sum_probs=74.2
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECC---Eec------------CeEEEE-----
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSF---RQI------------SDIGYM----- 89 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g---~~~------------~~ig~v----- 89 (291)
+..+++++ |++.+|+.++|+|+||||||||+++|+|+.++ +.|.|.+.| +++ .+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 45699998 99999999999999999999999999999854 446666644 333 135556
Q ss_pred cCCCC--CCCCC---CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC----C--CCCCcCcCCh
Q psy6612 90 PQELA--LHGEL---SIRETFRYYGYMFDMTDDQIETRSKEILKLLELP----P--AKKIVGALSG 144 (291)
Q Consensus 90 ~q~~~--l~~~l---tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~--~~~~~~~LSg 144 (291)
+|+|. +.+.+ ++.|++...+. .-....+...++.++++.+++. . ...+++.||.
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~~g~-~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~ 294 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRDQGK-TVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST 294 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHcCC-CcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH
Confidence 88763 33333 33344332211 0011244567788899999983 1 3567777763
No 477
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.74 E-value=3.2e-08 Score=84.94 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCCC--CCCCcCcCChhHHHHHH--HHHHHhc-CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 122 RSKEILKLLELPP--AKKIVGALSGGQQRRIS--FAVSLLH-NPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 122 ~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~--iAral~~-~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
.+.++++..++.. .-.++..+|+|++|++. +++.+-. +++++ |+|++|..+...+.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 4445566666642 23467779999999987 6566544 34443 99999999999999999988654
No 478
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.71 E-value=8.2e-09 Score=88.66 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
+||+++|+|+||||||||+++|+|++.+ +.++|.++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCccc
Confidence 6999999999999999999999999877 57777664
No 479
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.68 E-value=2e-07 Score=85.87 Aligned_cols=73 Identities=30% Similarity=0.448 Sum_probs=63.2
Q ss_pred CcCChhHHHHHHHHHHHhc--CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEE
Q psy6612 140 GALSGGQQRRISFAVSLLH--NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLM 213 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~--~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l 213 (291)
.+||-|+-+-+++|.+|.. .|.++++|||-++|-|..-..+...+++.++++ -||++||..+++.. ...+++.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~rLl~~~e~~~v~~~ 345 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPRLLNAVEEHSVFWL 345 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHHHHhhccccceEEe
Confidence 3899999999999999986 589999999999999999999999999987654 89999999999965 3334444
No 480
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.67 E-value=4.8e-08 Score=84.32 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=90.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (291)
+++|.|.-||||||+.+.+.... |-..++-. .+...+.-. . . ....++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~----~~~~i~~D------------------~~~~~~~~~------~-~---~~~~~i 48 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY----HFPVIDAD------------------KIAHQVVEK------G-S---PAYEKI 48 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc----CCeEEeCC------------------HHHHHHHhc------C-C---hHHHHH
Confidence 47999999999999999988653 11122211 111111100 0 0 112334
Q ss_pred HHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhH--H
Q psy6612 127 LKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE--A 204 (291)
Q Consensus 127 l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~--~ 204 (291)
.+.||-.-.+. .|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+.+..+.|.+|++.+|.+.+ +
T Consensus 49 ~~~fg~~i~~~------~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~ 120 (188)
T TIGR00152 49 VDHFGAQILNE------DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKL 120 (188)
T ss_pred HHHHCHHHhCC------CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCc
Confidence 55555221111 388999999999999999988887 8899999999999999886566899999999966 4
Q ss_pred hh-hCeEEEEeCC
Q psy6612 205 KG-AHNIGLMRDD 216 (291)
Q Consensus 205 ~~-~d~i~~l~~G 216 (291)
.. ||.++++..+
T Consensus 121 ~~~~D~vv~V~~~ 133 (188)
T TIGR00152 121 RSLCDRVIVVDVS 133 (188)
T ss_pred HHhCCEEEEEECC
Confidence 44 9999998754
No 481
>PRK08149 ATP synthase SpaL; Validated
Probab=98.63 E-value=8.4e-08 Score=92.86 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=55.0
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc---cEEEECCEec-------------CeEEEEcCCC
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA---GTIKLSFRQI-------------SDIGYMPQEL 93 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~~~-------------~~ig~v~q~~ 93 (291)
.+..+++++ +++.+|++++|+|+||+|||||+++|+++..++. |.|..+|+++ +++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 456899999 9999999999999999999999999999999887 8888888765 3467777654
Q ss_pred C
Q psy6612 94 A 94 (291)
Q Consensus 94 ~ 94 (291)
.
T Consensus 216 d 216 (428)
T PRK08149 216 D 216 (428)
T ss_pred C
Confidence 3
No 482
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.60 E-value=3.3e-08 Score=97.66 Aligned_cols=62 Identities=26% Similarity=0.265 Sum_probs=57.8
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
+.++++.||...+++++++.+..|+.++++||||||||||+++|.|+++|.+|++.+.+..+
T Consensus 187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 35888899998999999999999999999999999999999999999999999999887665
No 483
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.58 E-value=5.4e-08 Score=94.31 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=54.3
Q ss_pred EEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q psy6612 20 VAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ 82 (291)
Q Consensus 20 l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 82 (291)
++.+.++..+ .+..+++++ |++.+|+.++|+|+||+|||||+++|+|+..++.|.+.+.|+.
T Consensus 130 ~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 130 MVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred eeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 4456667777 468899999 9999999999999999999999999999999999988777754
No 484
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.56 E-value=7.4e-07 Score=93.27 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=50.0
Q ss_pred HhcCCCEEEEcccCCCCC-HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh----------hhCeEEEEeC
Q psy6612 156 LLHNPKLLILDEPTVGLD-PILSQIIWDRLKEMALNGKTIIITTHYIEEAK----------GAHNIGLMRD 215 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~----------~~d~i~~l~~ 215 (291)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+++.+. .|+..++|.+
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~ 702 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPN 702 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCC
Confidence 445899999999999999 78899999999999888999999999998653 2555556655
No 485
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.54 E-value=1.1e-07 Score=89.03 Aligned_cols=51 Identities=33% Similarity=0.438 Sum_probs=46.1
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 81 (291)
.+..+++++ |.+.+|+.++|+|+||+|||||+++|+|...|+.|.+...|+
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 356799999 999999999999999999999999999999999887776554
No 486
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.54 E-value=1.8e-06 Score=77.56 Aligned_cols=48 Identities=27% Similarity=0.311 Sum_probs=36.3
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHH-HhHh-CCcEEEEEccCHhHHh
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLK-EMAL-NGKTIIITTHYIEEAK 205 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~-~l~~-~g~tii~~tHd~~~~~ 205 (291)
.+..++|+||+..|=++.....+...+. .+.+ .+..++++||+.+...
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 4567999999999999988877766554 4566 4788999999998764
No 487
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.53 E-value=1.8e-06 Score=78.48 Aligned_cols=153 Identities=18% Similarity=0.138 Sum_probs=83.2
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
+.+.|+++.--+.+|+++.|.||+|+|||||+..++.......| .++.|+.-+. +..+.......
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g---------~~vl~iS~E~------~~~~~~~r~~~ 80 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHG---------VRVGTISLEE------PVVRTARRLLG 80 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC---------ceEEEEEccc------CHHHHHHHHHH
Confidence 35678888889999999999999999999999877654432212 1244443221 22222211100
Q ss_pred -ccCC--C-----hHHHHHHHHHHHHHcC-CCC--CCCCcCcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCCHH--
Q psy6612 111 -MFDM--T-----DDQIETRSKEILKLLE-LPP--AKKIVGALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLDPI-- 175 (291)
Q Consensus 111 -~~~~--~-----~~~~~~~~~~~l~~~~-l~~--~~~~~~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD~~-- 175 (291)
..+. . .....+.+..+.+.+. ... ........+ ....+..++.++ .+|+++++|..+.-.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~ 158 (271)
T cd01122 81 QYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERA 158 (271)
T ss_pred HHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhccCCC
Confidence 0000 0 0111122333333321 111 111112222 234445555554 479999999977654331
Q ss_pred ------HHHHHHHHHHHhH-hCCcEEEEEccC
Q psy6612 176 ------LSQIIWDRLKEMA-LNGKTIIITTHY 200 (291)
Q Consensus 176 ------~~~~i~~~l~~l~-~~g~tii~~tHd 200 (291)
....++..|++++ +.+.||++++|-
T Consensus 159 ~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 159 SGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 2345666677776 458999999984
No 488
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.53 E-value=8.7e-08 Score=85.42 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=31.7
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I 76 (291)
-.+..++||.||||||||||+++|++++++++|.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 34567999999999999999999999999999983
No 489
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.53 E-value=1.6e-07 Score=71.94 Aligned_cols=51 Identities=31% Similarity=0.503 Sum_probs=39.4
Q ss_pred CCCcCcCChhHHH-HHHHHHH------Hhc------CCCEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 136 KKIVGALSGGQQR-RISFAVS------LLH------NPKLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 136 ~~~~~~LSgGqkQ-rv~iAra------l~~------~p~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
.+..+.+|||||| .+.+|.+ +.. .|++++|||||++||+.....++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4678899999994 4444333 223 3799999999999999999999999875
No 490
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.52 E-value=1.4e-07 Score=91.52 Aligned_cols=68 Identities=24% Similarity=0.314 Sum_probs=55.5
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe---c------------CeEEEEcCCCCC
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ---I------------SDIGYMPQELAL 95 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~------------~~ig~v~q~~~l 95 (291)
+..+++++ |++.+|+.++|+|+||+|||||+++|+|...|+.|.+...|.. + .+.+.++++...
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~ 210 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSD 210 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEecccc
Confidence 56799999 9999999999999999999999999999999999988775442 2 124566776665
Q ss_pred CCCC
Q psy6612 96 HGEL 99 (291)
Q Consensus 96 ~~~l 99 (291)
++.+
T Consensus 211 ~p~~ 214 (422)
T TIGR02546 211 RPSL 214 (422)
T ss_pred CCHH
Confidence 5544
No 491
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.52 E-value=2.9e-07 Score=90.21 Aligned_cols=138 Identities=18% Similarity=0.186 Sum_probs=78.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
-+.+|+++.|.|++|+|||||+..++.......+.+ -|+.-+ .+..+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kv----------lYvs~E------Es~~qi~~-------------- 139 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKV----------LYVSGE------ESLQQIKM-------------- 139 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcE----------EEEECc------CCHHHHHH--------------
Confidence 589999999999999999999998877654433332 233221 12222111
Q ss_pred HHHHHHHHHcCCCCCC-CCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC---------CHHHHHHHHHHHHHhH-h
Q psy6612 121 TRSKEILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL---------DPILSQIIWDRLKEMA-L 189 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~~-~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL---------D~~~~~~i~~~l~~l~-~ 189 (291)
+ ++.+++...+ ....+.+- .+-... +--.+|+++++|.-++=. +....+++...|.+++ +
T Consensus 140 -r----a~rlg~~~~~l~~~~e~~~--~~I~~~--i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~ 210 (454)
T TIGR00416 140 -R----AIRLGLPEPNLYVLSETNW--EQICAN--IEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKT 210 (454)
T ss_pred -H----HHHcCCChHHeEEcCCCCH--HHHHHH--HHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 0 0111111000 00011111 111111 123589999999765421 1233455566677765 5
Q ss_pred CCcEEEEEccCHhH--------Hhh-hCeEEEEeCCE
Q psy6612 190 NGKTIIITTHYIEE--------AKG-AHNIGLMRDDQ 217 (291)
Q Consensus 190 ~g~tii~~tHd~~~--------~~~-~d~i~~l~~G~ 217 (291)
.|.|+++++|...+ ++. +|.+++|+.++
T Consensus 211 ~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 211 RGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred hCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 69999999997554 455 89999997653
No 492
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.50 E-value=1.1e-06 Score=77.76 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=42.4
Q ss_pred cCCCEEEEcccCC------CCCHHHHHHHHHHHHHhHhCCcEEEEEccCH---------hHHhh-hCeEEEEe
Q psy6612 158 HNPKLLILDEPTV------GLDPILSQIIWDRLKEMALNGKTIIITTHYI---------EEAKG-AHNIGLMR 214 (291)
Q Consensus 158 ~~p~llllDEPts------gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~---------~~~~~-~d~i~~l~ 214 (291)
.+++.+++| |.+ +.|...+..+.++++.+++.|.|+++++|.- ..++. ||.+++|+
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 368899999 544 4455567888889999988899999999952 22444 88888885
No 493
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.50 E-value=7.8e-08 Score=88.87 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=41.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC--CCccEEEECCEec--------CeEEEEcCCCCCCCCCCHHHHHHH
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNT--LDAGTIKLSFRQI--------SDIGYMPQELALHGELSIRETFRY 107 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~~g~~~--------~~ig~v~q~~~l~~~ltv~enl~~ 107 (291)
-.++||.||||||||||+++|.+++. |++|.|.+-+.+- ...+++ |...+++.+++.+.+.+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~ 133 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKF 133 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHH
Confidence 35999999999999999999999987 7788876633321 123332 44444455555554443
No 494
>PRK01889 GTPase RsgA; Reviewed
Probab=98.49 E-value=1.5e-07 Score=89.56 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=59.0
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEEcCCCCCCCCCCHHHHHHH
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYMPQELALHGELSIRETFRY 107 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v~q~~~l~~~ltv~enl~~ 107 (291)
-++.+.-.+.+|++++|+|+||+|||||+++|+|...++.|+|.+++..- +.+++++|...+++. +...++.+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~l 262 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQL 262 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhcc
Confidence 35566667889999999999999999999999999999999999876432 468899998877753 55555543
No 495
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.49 E-value=7.8e-08 Score=68.48 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=31.6
Q ss_pred EeeeeEEEeC-CcEEEEECCCCccHHHHHHHHHcCCCCCc
Q psy6612 35 LKGLNLNVPE-NKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73 (291)
Q Consensus 35 L~~vsl~i~~-Gei~~liGpNGaGKSTLl~~i~gl~~p~~ 73 (291)
+++-.+++.+ |+++.|.|||||||||++.+|.=++-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4456677775 57999999999999999999987776644
No 496
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.49 E-value=3.4e-07 Score=73.21 Aligned_cols=109 Identities=20% Similarity=0.190 Sum_probs=70.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHH
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~ 123 (291)
.+..+.|.||.|+|||||++.++.........+ .++.... ........ .
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v----------~~~~~~~-------~~~~~~~~-------------~- 66 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPF----------LYLNASD-------LLEGLVVA-------------E- 66 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe----------EEEehhh-------hhhhhHHH-------------H-
Confidence 578899999999999999999998875222222 1211100 00000000 0
Q ss_pred HHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-----CCcEEEEEc
Q psy6612 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-----NGKTIIITT 198 (291)
Q Consensus 124 ~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~t 198 (291)
..... .+......+...++.++++||.-.. ++.....+.+.+..+.. .+.++|++|
T Consensus 67 --~~~~~----------------~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~ 127 (151)
T cd00009 67 --LFGHF----------------LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGAT 127 (151)
T ss_pred --Hhhhh----------------hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEec
Confidence 00000 5566667777889999999998665 66777888888888753 467889998
Q ss_pred cCHh
Q psy6612 199 HYIE 202 (291)
Q Consensus 199 Hd~~ 202 (291)
++..
T Consensus 128 ~~~~ 131 (151)
T cd00009 128 NRPL 131 (151)
T ss_pred Cccc
Confidence 8654
No 497
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.48 E-value=2e-07 Score=90.61 Aligned_cols=63 Identities=25% Similarity=0.310 Sum_probs=53.3
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc---cEEEECCEec------------CeEEEEcCCCC
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA---GTIKLSFRQI------------SDIGYMPQELA 94 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~~~------------~~ig~v~q~~~ 94 (291)
+..+++.+ |++.+|++++|+|+||+|||||+++|+|+.+|+. |.|.+.|+++ .+.++|+|+..
T Consensus 162 GiraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 162 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred cceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 35577766 9999999999999999999999999999999985 8898888876 24677777654
No 498
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.47 E-value=5.1e-08 Score=85.52 Aligned_cols=29 Identities=38% Similarity=0.456 Sum_probs=27.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
++|++++|.||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999999764
No 499
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.46 E-value=1.8e-07 Score=80.73 Aligned_cols=36 Identities=36% Similarity=0.609 Sum_probs=30.7
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
|++++|+||||||||||+++|++...+ .+.+.+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~ 37 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYI 37 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEEC
Confidence 789999999999999999999998866 466666544
No 500
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.46 E-value=1.2e-07 Score=88.89 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=36.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
.+|++++++|||||||||++..|++.+.+..|+|.+.+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 57999999999999999999999999998888998866554
Done!