Query psy6612
Match_columns 291
No_of_seqs 297 out of 2223
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 22:35:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 8.6E-61 3E-65 450.8 30.1 213 18-230 3-229 (359)
2 2olj_A Amino acid ABC transpor 100.0 4.2E-60 1.5E-64 429.7 31.2 220 10-229 15-248 (263)
3 2pcj_A ABC transporter, lipopr 100.0 2.6E-60 9E-65 421.3 29.1 207 17-223 2-222 (224)
4 3tui_C Methionine import ATP-b 100.0 1.8E-60 6E-65 449.3 28.9 214 16-229 21-253 (366)
5 3rlf_A Maltose/maltodextrin im 100.0 3E-60 1E-64 450.0 30.0 212 19-230 3-224 (381)
6 3tif_A Uncharacterized ABC tra 100.0 6.6E-60 2.3E-64 421.6 27.8 209 19-227 1-232 (235)
7 3gfo_A Cobalt import ATP-bindi 100.0 6.5E-60 2.2E-64 431.0 27.7 214 17-230 5-234 (275)
8 1b0u_A Histidine permease; ABC 100.0 2.1E-59 7E-64 424.8 30.1 212 18-229 5-242 (262)
9 1vpl_A ABC transporter, ATP-bi 100.0 3.8E-59 1.3E-63 421.9 29.6 212 18-229 14-235 (256)
10 4g1u_C Hemin import ATP-bindin 100.0 7.3E-59 2.5E-63 422.2 28.7 218 18-239 10-245 (266)
11 2yyz_A Sugar ABC transporter, 100.0 5.9E-59 2E-63 438.8 29.0 212 19-230 3-224 (359)
12 1ji0_A ABC transporter; ATP bi 100.0 1E-58 3.6E-63 415.0 29.1 211 18-229 5-228 (240)
13 1g6h_A High-affinity branched- 100.0 4E-59 1.4E-63 421.7 26.6 209 18-226 6-239 (257)
14 1z47_A CYSA, putative ABC-tran 100.0 4.5E-59 1.5E-63 438.9 27.8 214 17-230 12-236 (355)
15 2it1_A 362AA long hypothetical 100.0 8.2E-59 2.8E-63 438.3 29.1 212 19-230 3-224 (362)
16 1v43_A Sugar-binding transport 100.0 1.2E-58 4E-63 438.7 28.6 212 19-230 11-232 (372)
17 1g29_1 MALK, maltose transport 100.0 2E-58 7E-63 437.3 30.1 212 19-230 3-230 (372)
18 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-58 4.2E-63 436.1 26.5 212 19-230 3-231 (353)
19 3d31_A Sulfate/molybdate ABC t 100.0 4.5E-58 1.5E-62 431.3 26.4 207 19-229 1-217 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 9.4E-58 3.2E-62 409.1 24.8 206 19-229 1-216 (240)
21 2yz2_A Putative ABC transporte 100.0 3E-57 1E-61 411.4 26.7 210 19-229 2-227 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 2.5E-57 8.7E-62 414.7 23.8 212 18-229 20-252 (279)
23 2nq2_C Hypothetical ABC transp 100.0 3.9E-56 1.3E-60 401.5 29.7 208 17-229 2-217 (253)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 3.1E-56 1.1E-60 401.2 24.0 207 19-225 3-229 (250)
25 2zu0_C Probable ATP-dependent 100.0 1.7E-55 5.7E-60 400.2 28.2 211 17-227 18-252 (267)
26 2ixe_A Antigen peptide transpo 100.0 1.1E-55 3.7E-60 402.3 25.0 211 17-229 14-245 (271)
27 2qi9_C Vitamin B12 import ATP- 100.0 3.5E-55 1.2E-59 394.5 25.1 203 17-229 2-222 (249)
28 2ff7_A Alpha-hemolysin translo 100.0 5.7E-55 1.9E-59 392.5 24.7 204 18-229 6-232 (247)
29 1sgw_A Putative ABC transporte 100.0 2.7E-55 9.2E-60 386.9 17.4 197 18-218 9-210 (214)
30 1mv5_A LMRA, multidrug resista 100.0 3.1E-55 1.1E-59 393.1 17.3 204 19-229 1-226 (243)
31 3nh6_A ATP-binding cassette SU 100.0 2.8E-54 9.6E-59 399.2 24.0 206 17-230 51-278 (306)
32 2ghi_A Transport protein; mult 100.0 8.2E-54 2.8E-58 387.7 24.3 214 7-229 5-242 (260)
33 2pjz_A Hypothetical protein ST 100.0 5.4E-54 1.8E-58 389.6 23.0 199 19-228 1-214 (263)
34 2pze_A Cystic fibrosis transme 100.0 2E-53 7E-58 378.2 23.0 200 17-229 4-218 (229)
35 2cbz_A Multidrug resistance-as 100.0 2.5E-53 8.7E-58 379.5 21.1 201 19-229 3-217 (237)
36 3gd7_A Fusion complex of cysti 100.0 5.2E-53 1.8E-57 402.2 18.7 208 13-230 13-243 (390)
37 3b5x_A Lipid A export ATP-bind 100.0 2.5E-50 8.6E-55 401.9 23.2 206 17-229 339-567 (582)
38 3b60_A Lipid A export ATP-bind 100.0 2.5E-50 8.5E-55 401.9 21.4 206 17-229 339-567 (582)
39 2yl4_A ATP-binding cassette SU 100.0 7.3E-50 2.5E-54 399.5 22.6 207 17-229 338-570 (595)
40 3qf4_A ABC transporter, ATP-bi 100.0 5.1E-50 1.7E-54 400.2 20.4 210 17-230 339-567 (587)
41 2bbs_A Cystic fibrosis transme 100.0 1E-49 3.4E-54 366.3 19.1 197 17-229 38-247 (290)
42 4a82_A Cystic fibrosis transme 100.0 1.7E-49 5.8E-54 395.7 22.2 206 17-230 337-565 (578)
43 3qf4_B Uncharacterized ABC tra 100.0 1.5E-49 5.2E-54 397.5 18.6 206 17-230 352-579 (598)
44 4f4c_A Multidrug resistance pr 100.0 1.2E-46 4.1E-51 404.6 19.6 212 13-230 1070-1305(1321)
45 3bk7_A ABC transporter ATP-bin 100.0 8.8E-46 3E-50 370.4 22.1 205 17-230 355-564 (607)
46 3ozx_A RNAse L inhibitor; ATP 100.0 2.2E-45 7.5E-50 363.1 24.5 206 17-229 267-477 (538)
47 1yqt_A RNAse L inhibitor; ATP- 100.0 6.7E-46 2.3E-50 366.9 20.8 205 17-230 285-494 (538)
48 3g5u_A MCG1178, multidrug resi 100.0 8E-45 2.7E-49 389.6 23.3 210 17-230 385-614 (1284)
49 4f4c_A Multidrug resistance pr 100.0 8E-45 2.7E-49 390.4 22.4 207 15-229 411-641 (1321)
50 3g5u_A MCG1178, multidrug resi 100.0 4.1E-45 1.4E-49 391.8 18.9 208 17-230 1028-1259(1284)
51 3j16_B RLI1P; ribosome recycli 100.0 5.2E-43 1.8E-47 350.2 21.6 201 23-231 350-561 (608)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 4.6E-44 1.6E-48 353.8 13.2 184 23-216 25-234 (538)
53 3bk7_A ABC transporter ATP-bin 100.0 5.1E-44 1.7E-48 357.7 12.9 184 23-216 95-304 (607)
54 3ux8_A Excinuclease ABC, A sub 100.0 6E-43 2E-47 353.8 16.7 199 31-229 30-298 (670)
55 2iw3_A Elongation factor 3A; a 100.0 7.7E-43 2.6E-47 362.1 15.8 202 17-223 669-981 (986)
56 2iw3_A Elongation factor 3A; a 100.0 1.2E-41 4.1E-46 353.1 24.1 193 19-229 435-635 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 3.7E-40 1.3E-44 333.4 19.6 191 32-229 335-640 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 1.1E-39 3.7E-44 326.2 14.7 188 23-218 81-299 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 2.1E-39 7.3E-44 320.3 12.6 182 24-217 4-214 (538)
60 2r6f_A Excinuclease ABC subuni 100.0 4.9E-37 1.7E-41 316.9 17.5 201 18-229 628-942 (972)
61 3pih_A Uvrabc system protein A 100.0 9.1E-37 3.1E-41 315.9 19.4 192 32-229 597-902 (916)
62 2vf7_A UVRA2, excinuclease ABC 100.0 8E-37 2.7E-41 314.0 18.3 202 17-229 500-827 (842)
63 2ygr_A Uvrabc system protein A 100.0 2.3E-36 7.8E-41 312.9 16.9 201 18-229 646-960 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.6E-40 8.9E-45 321.1 -14.1 207 17-239 116-348 (460)
65 4aby_A DNA repair protein RECN 100.0 4.7E-35 1.6E-39 278.9 22.3 189 32-223 48-382 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 5.5E-33 1.9E-37 262.4 13.4 85 136-220 274-364 (365)
67 4gp7_A Metallophosphoesterase; 100.0 3.3E-33 1.1E-37 236.6 3.2 151 37-210 1-168 (171)
68 3b85_A Phosphate starvation-in 100.0 1E-35 3.5E-40 260.8 -13.1 145 27-206 8-163 (208)
69 1e69_A Chromosome segregation 100.0 5.9E-31 2E-35 244.1 13.6 83 135-218 213-301 (322)
70 1tq4_A IIGP1, interferon-induc 100.0 5.3E-34 1.8E-38 273.1 -11.2 174 32-216 36-254 (413)
71 1znw_A Guanylate kinase, GMP k 100.0 1.7E-33 6E-38 244.8 -14.8 172 31-215 8-203 (207)
72 1ye8_A Protein THEP1, hypothet 100.0 1.2E-29 4.1E-34 216.9 3.8 131 47-209 2-152 (178)
73 2v9p_A Replication protein E1; 99.9 2.2E-33 7.4E-38 259.1 -23.6 162 19-227 101-264 (305)
74 3b9q_A Chloroplast SRP recepto 99.9 7.7E-30 2.6E-34 235.2 -0.6 171 29-218 84-284 (302)
75 2dpy_A FLII, flagellum-specifi 99.9 1.2E-30 4E-35 251.9 -14.5 183 19-226 131-341 (438)
76 3aez_A Pantothenate kinase; tr 99.9 3.6E-31 1.2E-35 245.1 -18.6 182 15-216 39-245 (312)
77 1z6g_A Guanylate kinase; struc 99.9 4.7E-31 1.6E-35 231.9 -17.1 147 32-189 10-175 (218)
78 2og2_A Putative signal recogni 99.9 3.4E-28 1.2E-32 229.1 0.9 164 36-218 148-341 (359)
79 3sop_A Neuronal-specific septi 99.9 5.7E-29 2E-33 226.0 -6.4 144 47-204 4-153 (270)
80 2o8b_B DNA mismatch repair pro 99.9 2.7E-27 9.4E-32 248.3 3.5 165 17-219 748-930 (1022)
81 3qkt_A DNA double-strand break 99.9 3.8E-25 1.3E-29 206.4 17.2 79 136-214 243-327 (339)
82 3pih_A Uvrabc system protein A 99.9 5.6E-26 1.9E-30 235.4 10.5 159 60-229 383-560 (916)
83 2o5v_A DNA replication and rep 99.9 3.3E-25 1.1E-29 208.7 14.4 86 136-227 259-354 (359)
84 2pt7_A CAG-ALFA; ATPase, prote 99.9 3.7E-27 1.3E-31 219.8 -0.6 132 34-217 160-291 (330)
85 4ad8_A DNA repair protein RECN 99.9 4.4E-25 1.5E-29 216.9 13.3 79 137-216 392-473 (517)
86 2obl_A ESCN; ATPase, hydrolase 99.9 2.4E-27 8.1E-32 222.5 -4.6 182 19-226 45-252 (347)
87 1tf7_A KAIC; homohexamer, hexa 99.9 1.6E-28 5.5E-33 241.8 -13.4 170 20-215 13-209 (525)
88 1cr0_A DNA primase/helicase; R 99.9 2.6E-26 8.9E-31 209.5 1.4 177 32-218 22-237 (296)
89 1tf7_A KAIC; homohexamer, hexa 99.9 5.4E-25 1.8E-29 216.6 8.7 153 39-217 275-444 (525)
90 2r6f_A Excinuclease ABC subuni 99.9 1.9E-24 6.6E-29 223.4 12.9 148 70-229 433-600 (972)
91 2jeo_A Uridine-cytidine kinase 99.9 5.2E-26 1.8E-30 202.6 0.9 176 29-230 9-188 (245)
92 3thx_A DNA mismatch repair pro 99.9 4.7E-25 1.6E-29 229.2 5.5 171 10-225 621-809 (934)
93 2vf7_A UVRA2, excinuclease ABC 99.9 3.2E-24 1.1E-28 220.5 10.4 166 53-229 270-475 (842)
94 2ehv_A Hypothetical protein PH 99.9 3E-25 1E-29 195.7 -0.5 174 20-215 7-207 (251)
95 1w1w_A Structural maintenance 99.9 6.8E-23 2.3E-27 196.7 15.3 78 137-214 329-410 (430)
96 2ygr_A Uvrabc system protein A 99.9 4.3E-23 1.5E-27 213.9 13.6 131 97-229 467-617 (993)
97 2qnr_A Septin-2, protein NEDD5 99.9 1E-25 3.5E-30 207.3 -5.7 158 23-202 2-168 (301)
98 1ewq_A DNA mismatch repair pro 99.9 1.5E-24 5.1E-29 221.6 1.7 147 17-207 548-704 (765)
99 3thx_B DNA mismatch repair pro 99.9 6.7E-24 2.3E-28 220.0 6.5 162 10-209 632-804 (918)
100 2eyu_A Twitching motility prot 99.9 3.7E-24 1.3E-28 193.4 0.8 131 33-214 15-146 (261)
101 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 3.4E-22 1.2E-26 165.9 11.4 83 135-217 51-141 (148)
102 4a74_A DNA repair and recombin 99.9 2.9E-24 1E-28 187.0 -1.6 144 41-216 21-200 (231)
103 3asz_A Uridine kinase; cytidin 99.9 2.2E-25 7.6E-30 193.0 -9.4 145 42-202 3-162 (211)
104 1wb9_A DNA mismatch repair pro 99.9 5.5E-23 1.9E-27 211.1 2.3 174 10-221 569-750 (800)
105 1rj9_A FTSY, signal recognitio 99.8 1.2E-23 4.1E-28 194.0 -4.2 143 44-202 101-259 (304)
106 3szr_A Interferon-induced GTP- 99.8 2.6E-24 9.1E-29 215.3 -11.4 177 19-224 10-232 (608)
107 2w0m_A SSO2452; RECA, SSPF, un 99.8 9.1E-23 3.1E-27 177.3 -1.1 166 31-216 8-192 (235)
108 1pzn_A RAD51, DNA repair and r 99.8 1.2E-22 4.2E-27 190.5 -2.7 156 32-218 117-304 (349)
109 2qag_C Septin-7; cell cycle, c 99.8 1.2E-22 4.2E-27 194.7 -3.8 162 17-203 9-179 (418)
110 2i3b_A HCR-ntpase, human cance 99.8 1.8E-23 6.1E-28 180.3 -8.8 149 45-220 1-167 (189)
111 1pui_A ENGB, probable GTP-bind 99.8 1.1E-21 3.8E-26 168.5 1.8 171 19-193 3-202 (210)
112 1nlf_A Regulatory protein REPA 99.8 2.3E-20 7.7E-25 168.9 9.1 149 41-204 26-184 (279)
113 3jvv_A Twitching mobility prot 99.8 2.2E-21 7.7E-26 182.5 1.0 130 32-215 103-245 (356)
114 1s96_A Guanylate kinase, GMP k 99.8 8.4E-22 2.9E-26 173.5 -2.9 142 39-231 10-162 (219)
115 2bdt_A BH3686; alpha-beta prot 99.8 4.4E-24 1.5E-28 181.9 -21.9 168 45-227 2-182 (189)
116 2bbw_A Adenylate kinase 4, AK4 99.8 6.5E-22 2.2E-26 175.8 -10.3 138 44-190 26-199 (246)
117 2qag_B Septin-6, protein NEDD5 99.8 1E-20 3.5E-25 181.3 -2.9 174 20-200 17-218 (427)
118 3kta_B Chromosome segregation 99.8 1.9E-18 6.5E-23 146.9 10.0 81 136-217 59-145 (173)
119 1zp6_A Hypothetical protein AT 99.7 3.3E-21 1.1E-25 163.8 -9.4 144 41-198 5-158 (191)
120 2cvh_A DNA repair and recombin 99.7 3.3E-18 1.1E-22 147.7 8.2 152 33-216 7-185 (220)
121 2qm8_A GTPase/ATPase; G protei 99.7 4.2E-22 1.4E-26 186.0 -17.7 166 20-189 30-260 (337)
122 1htw_A HI0065; nucleotide-bind 99.7 1.5E-20 5E-25 157.6 -9.3 84 23-108 11-98 (158)
123 2ewv_A Twitching motility prot 99.7 1.1E-18 3.7E-23 165.0 1.0 122 34-211 127-254 (372)
124 2rcn_A Probable GTPase ENGC; Y 99.7 4E-18 1.4E-22 160.2 4.1 116 34-156 205-328 (358)
125 2gza_A Type IV secretion syste 99.7 1E-18 3.6E-23 164.4 -0.8 130 35-216 165-302 (361)
126 1lw7_A Transcriptional regulat 99.7 5.5E-20 1.9E-24 172.9 -10.7 151 35-200 158-328 (365)
127 1n0w_A DNA repair protein RAD5 99.7 1.1E-17 3.9E-22 146.5 4.6 147 41-216 20-209 (243)
128 1nij_A Hypothetical protein YJ 99.7 7.5E-21 2.6E-25 176.0 -16.7 140 46-203 5-191 (318)
129 3e70_C DPA, signal recognition 99.7 7.2E-18 2.5E-22 156.9 1.8 155 42-219 126-307 (328)
130 1udx_A The GTP-binding protein 99.6 5.1E-17 1.8E-21 155.6 4.4 146 35-199 147-306 (416)
131 2yhs_A FTSY, cell division pro 99.6 1.5E-17 5.1E-22 161.7 0.3 147 35-199 283-447 (503)
132 3auy_A DNA double-strand break 99.6 8.1E-16 2.8E-20 144.9 11.7 78 137-215 276-360 (371)
133 3ec2_A DNA replication protein 99.6 3.7E-16 1.3E-20 131.8 7.4 112 39-202 32-144 (180)
134 2oap_1 GSPE-2, type II secreti 99.6 7.8E-19 2.7E-23 172.3 -11.1 164 33-208 248-458 (511)
135 2yv5_A YJEQ protein; hydrolase 99.6 1.9E-17 6.6E-22 152.1 -1.7 112 41-154 161-300 (302)
136 1p9r_A General secretion pathw 99.6 1.3E-19 4.5E-24 173.7 -17.9 136 21-165 145-315 (418)
137 2kjq_A DNAA-related protein; s 99.6 5.6E-16 1.9E-20 128.2 4.7 92 34-200 30-124 (149)
138 1in4_A RUVB, holliday junction 99.6 3.8E-19 1.3E-23 165.3 -16.3 165 21-208 20-210 (334)
139 1sxj_E Activator 1 40 kDa subu 99.6 1.4E-15 4.7E-20 140.8 6.7 131 47-204 38-177 (354)
140 1odf_A YGR205W, hypothetical 3 99.6 4.2E-17 1.4E-21 149.3 -4.3 125 43-175 29-168 (290)
141 2f1r_A Molybdopterin-guanine d 99.6 1.5E-17 5.1E-22 141.0 -7.0 129 46-191 3-163 (171)
142 3lda_A DNA repair protein RAD5 99.6 1.5E-14 5.1E-19 137.9 11.6 130 41-200 174-327 (400)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 1.2E-17 4.1E-22 158.8 -10.2 160 41-224 16-208 (392)
144 1sq5_A Pantothenate kinase; P- 99.5 8E-18 2.7E-22 154.9 -13.1 138 15-174 33-199 (308)
145 1u0l_A Probable GTPase ENGC; p 99.5 1.9E-16 6.4E-21 145.3 -5.0 101 40-144 164-294 (301)
146 2x8a_A Nuclear valosin-contain 99.5 1.6E-18 5.4E-23 157.3 -20.6 137 30-184 31-190 (274)
147 3c8u_A Fructokinase; YP_612366 99.5 1.1E-16 3.6E-21 138.7 -8.7 146 42-216 19-173 (208)
148 3lnc_A Guanylate kinase, GMP k 99.5 1.6E-18 5.4E-23 152.4 -21.1 161 32-204 14-198 (231)
149 1lvg_A Guanylate kinase, GMP k 99.4 2.2E-18 7.4E-23 148.8 -22.2 149 43-215 2-173 (198)
150 1t9h_A YLOQ, probable GTPase E 99.4 3.4E-15 1.2E-19 137.6 -3.1 109 40-149 168-303 (307)
151 1vma_A Cell division protein F 99.4 3.1E-14 1.1E-18 131.2 2.3 114 37-188 96-212 (306)
152 2px0_A Flagellar biosynthesis 99.4 3E-13 1E-17 123.9 8.1 140 43-221 103-247 (296)
153 1ls1_A Signal recognition part 99.4 7.5E-14 2.6E-18 127.8 2.9 130 23-188 80-210 (295)
154 3tr0_A Guanylate kinase, GMP k 99.3 1.9E-14 6.5E-19 123.0 -4.8 65 39-107 1-74 (205)
155 2ius_A DNA translocase FTSK; n 99.3 1.6E-14 5.4E-19 141.4 -6.1 162 37-202 159-343 (512)
156 3euj_A Chromosome partition pr 99.3 2.6E-13 9E-18 131.9 2.1 51 32-83 17-67 (483)
157 2dr3_A UPF0273 protein PH0284; 99.3 4.2E-12 1.5E-16 110.9 9.7 163 33-215 10-196 (247)
158 2r6a_A DNAB helicase, replicat 99.3 2.5E-12 8.5E-17 124.1 7.6 169 32-218 190-401 (454)
159 1iy2_A ATP-dependent metallopr 99.3 1.4E-15 4.7E-20 137.2 -16.8 130 22-169 52-195 (278)
160 1ixz_A ATP-dependent metallopr 99.2 1.2E-15 4E-20 135.5 -17.5 131 22-170 28-172 (254)
161 3k1j_A LON protease, ATP-depen 99.2 7.3E-14 2.5E-18 139.5 -7.4 161 25-187 40-228 (604)
162 1oix_A RAS-related protein RAB 99.2 2.1E-12 7E-17 109.7 2.3 134 47-187 31-189 (191)
163 1qhl_A Protein (cell division 99.2 2.6E-13 8.7E-18 119.9 -4.1 57 19-83 9-65 (227)
164 2zr9_A Protein RECA, recombina 99.2 9.1E-12 3.1E-16 116.6 5.9 139 41-218 57-232 (349)
165 2qtf_A Protein HFLX, GTP-bindi 99.1 2.8E-11 9.5E-16 113.9 1.9 134 47-188 181-352 (364)
166 2f9l_A RAB11B, member RAS onco 99.0 7.9E-11 2.7E-15 100.1 2.5 37 150-188 130-166 (199)
167 1svm_A Large T antigen; AAA+ f 99.0 1.3E-12 4.6E-17 123.4 -11.4 143 33-194 157-325 (377)
168 3kta_A Chromosome segregation 98.9 3.6E-10 1.2E-14 94.7 4.1 117 32-151 12-152 (182)
169 4eun_A Thermoresistant glucoki 98.9 4.3E-11 1.5E-15 102.5 -3.5 47 33-83 17-63 (200)
170 2xau_A PRE-mRNA-splicing facto 98.9 2.2E-09 7.4E-14 110.1 7.1 137 42-208 106-260 (773)
171 3nwj_A ATSK2; P loop, shikimat 98.9 1.1E-10 3.6E-15 104.5 -2.6 52 18-69 16-72 (250)
172 3hr8_A Protein RECA; alpha and 98.9 1.4E-09 4.7E-14 102.0 4.8 36 41-76 57-92 (356)
173 2e87_A Hypothetical protein PH 98.8 2.2E-09 7.6E-14 100.2 5.6 123 44-202 166-293 (357)
174 1jjv_A Dephospho-COA kinase; P 98.8 3.4E-10 1.1E-14 96.9 -0.8 126 47-215 4-132 (206)
175 3uie_A Adenylyl-sulfate kinase 98.8 9.8E-11 3.4E-15 100.2 -4.3 61 23-84 3-65 (200)
176 2ce7_A Cell division protein F 98.8 3.8E-09 1.3E-13 102.7 5.7 116 32-204 38-167 (476)
177 4e22_A Cytidylate kinase; P-lo 98.8 3.5E-10 1.2E-14 100.7 -1.5 52 29-83 14-76 (252)
178 3a00_A Guanylate kinase, GMP k 98.8 1.3E-09 4.3E-14 92.3 1.6 28 45-72 1-28 (186)
179 3t34_A Dynamin-related protein 98.8 9E-11 3.1E-15 109.7 -6.9 164 32-199 24-212 (360)
180 2dhr_A FTSH; AAA+ protein, hex 98.7 1.7E-11 5.9E-16 119.8 -12.4 126 27-170 48-187 (499)
181 3tqc_A Pantothenate kinase; bi 98.7 4.1E-11 1.4E-15 110.9 -10.8 137 26-174 67-211 (321)
182 2j41_A Guanylate kinase; GMP, 98.7 9.1E-09 3.1E-13 87.4 4.0 35 40-74 1-35 (207)
183 4a1f_A DNAB helicase, replicat 98.7 2.8E-08 9.7E-13 92.5 7.0 130 32-199 33-164 (338)
184 1fnn_A CDC6P, cell division co 98.6 7.4E-08 2.5E-12 89.2 9.4 126 44-204 41-172 (389)
185 1zu4_A FTSY; GTPase, signal re 98.6 4.6E-09 1.6E-13 97.1 0.6 49 35-83 95-143 (320)
186 2www_A Methylmalonic aciduria 98.6 7.4E-09 2.5E-13 96.7 1.7 39 43-81 72-110 (349)
187 1kgd_A CASK, peripheral plasma 98.5 2.4E-08 8.1E-13 84.0 2.3 36 43-78 3-39 (180)
188 3vaa_A Shikimate kinase, SK; s 98.5 4E-08 1.4E-12 83.8 3.4 39 31-69 11-49 (199)
189 2dy1_A Elongation factor G; tr 98.5 1.3E-08 4.5E-13 102.7 -0.1 124 39-203 3-138 (665)
190 2vp4_A Deoxynucleoside kinase; 98.5 3.7E-08 1.3E-12 86.1 2.2 42 38-83 13-54 (230)
191 3kl4_A SRP54, signal recogniti 98.5 4.7E-07 1.6E-11 86.8 9.5 38 44-81 96-133 (433)
192 1rz3_A Hypothetical protein rb 98.4 3.9E-08 1.3E-12 84.1 0.5 42 41-82 18-59 (201)
193 3ney_A 55 kDa erythrocyte memb 98.4 1.3E-07 4.3E-12 81.6 2.8 32 39-70 13-44 (197)
194 1knq_A Gluconate kinase; ALFA/ 98.3 1E-07 3.6E-12 79.0 1.8 37 43-83 6-42 (175)
195 3tau_A Guanylate kinase, GMP k 98.3 2.3E-07 7.8E-12 79.8 3.9 29 43-71 6-34 (208)
196 3cr8_A Sulfate adenylyltranfer 98.3 6.7E-08 2.3E-12 95.5 0.5 43 41-83 365-409 (552)
197 3bh0_A DNAB-like replicative h 98.3 7.1E-07 2.4E-11 81.9 7.3 133 32-200 55-190 (315)
198 2ffh_A Protein (FFH); SRP54, s 98.3 6.3E-08 2.1E-12 92.8 0.2 155 24-199 81-246 (425)
199 2z4s_A Chromosomal replication 98.3 6.4E-07 2.2E-11 86.0 7.3 43 158-200 193-236 (440)
200 2qby_A CDC6 homolog 1, cell di 98.3 2.4E-07 8.1E-12 85.3 3.8 30 43-72 43-72 (386)
201 3b9p_A CG5977-PA, isoform A; A 98.3 3.3E-06 1.1E-10 75.7 10.9 116 44-214 53-187 (297)
202 2p67_A LAO/AO transport system 98.3 3.4E-09 1.2E-13 98.5 -9.6 61 22-82 33-93 (341)
203 2z43_A DNA repair and recombin 98.3 2E-06 6.7E-11 79.1 8.3 138 41-202 103-259 (324)
204 1v5w_A DMC1, meiotic recombina 98.3 4.6E-06 1.6E-10 77.4 10.7 139 41-203 118-276 (343)
205 2qt1_A Nicotinamide riboside k 98.2 4.4E-07 1.5E-11 77.4 3.5 46 38-97 14-59 (207)
206 3lxx_A GTPase IMAP family memb 98.2 1.4E-05 4.7E-10 69.7 12.5 42 158-199 111-154 (239)
207 1ega_A Protein (GTP-binding pr 98.2 2.6E-06 9E-11 77.5 7.6 56 142-204 101-162 (301)
208 1kag_A SKI, shikimate kinase I 98.1 8.2E-07 2.8E-11 73.2 2.6 28 44-71 3-30 (173)
209 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 1.4E-06 4.9E-11 71.2 3.8 31 36-67 15-45 (149)
210 1ypw_A Transitional endoplasmi 98.1 1.8E-06 6.1E-11 88.9 5.3 32 40-71 233-264 (806)
211 3cf0_A Transitional endoplasmi 98.1 6.1E-06 2.1E-10 74.8 7.1 30 40-69 44-73 (301)
212 3m6a_A ATP-dependent protease 98.1 4.4E-07 1.5E-11 89.4 -0.7 58 23-81 87-144 (543)
213 1l8q_A Chromosomal replication 98.0 1.1E-05 3.7E-10 73.5 8.3 42 158-199 97-139 (324)
214 2pez_A Bifunctional 3'-phospho 98.0 1.3E-06 4.3E-11 72.8 1.4 40 43-83 3-44 (179)
215 4eaq_A DTMP kinase, thymidylat 98.0 2.5E-06 8.4E-11 74.8 2.9 43 34-77 12-57 (229)
216 2w58_A DNAI, primosome compone 98.0 5.2E-06 1.8E-10 70.2 4.7 26 46-71 55-80 (202)
217 1mky_A Probable GTP-binding pr 98.0 6.4E-06 2.2E-10 78.8 5.8 150 47-204 182-368 (439)
218 1cke_A CK, MSSA, protein (cyti 98.0 8.7E-07 3E-11 76.3 -0.3 34 45-78 5-41 (227)
219 3qks_A DNA double-strand break 97.9 6.4E-06 2.2E-10 70.7 3.8 31 36-67 15-45 (203)
220 2q6t_A DNAB replication FORK h 97.9 8.6E-05 2.9E-09 71.0 12.1 130 33-199 188-318 (444)
221 1m7g_A Adenylylsulfate kinase; 97.9 2.2E-06 7.5E-11 73.5 0.4 43 40-82 20-64 (211)
222 1sxj_D Activator 1 41 kDa subu 97.9 2E-07 6.7E-12 85.4 -6.9 44 159-204 133-176 (353)
223 1u94_A RECA protein, recombina 97.8 8.3E-05 2.8E-09 69.4 10.8 122 42-201 60-200 (356)
224 3llm_A ATP-dependent RNA helic 97.8 2.5E-05 8.7E-10 68.0 6.5 141 42-204 73-223 (235)
225 2qag_A Septin-2, protein NEDD5 97.8 9.1E-07 3.1E-11 82.8 -3.3 56 15-76 13-68 (361)
226 3bos_A Putative DNA replicatio 97.8 6.2E-06 2.1E-10 70.7 2.0 27 44-70 51-77 (242)
227 1m2o_B GTP-binding protein SAR 97.8 1.8E-05 6.2E-10 66.2 4.6 34 33-67 12-45 (190)
228 3auy_A DNA double-strand break 97.8 2.1E-05 7.1E-10 73.6 5.4 31 35-66 16-46 (371)
229 1j8m_F SRP54, signal recogniti 97.8 2E-06 6.9E-11 78.4 -1.6 56 24-82 79-135 (297)
230 2gj8_A MNME, tRNA modification 97.8 2.2E-05 7.6E-10 64.7 4.8 27 43-69 2-28 (172)
231 1f6b_A SAR1; gtpases, N-termin 97.7 5.2E-06 1.8E-10 70.2 0.3 39 28-67 8-47 (198)
232 2yvu_A Probable adenylyl-sulfa 97.7 1E-05 3.6E-10 67.6 1.9 38 40-77 8-45 (186)
233 1sxj_C Activator 1 40 kDa subu 97.7 1.8E-06 6.1E-11 79.5 -3.6 48 28-75 27-76 (340)
234 3ice_A Transcription terminati 97.6 4.4E-06 1.5E-10 79.0 -1.6 53 17-69 131-198 (422)
235 2wji_A Ferrous iron transport 97.6 6.4E-05 2.2E-09 61.2 5.6 24 47-70 5-28 (165)
236 1y63_A LMAJ004144AAA protein; 97.6 2.4E-05 8E-10 65.6 3.0 32 37-68 2-33 (184)
237 2if2_A Dephospho-COA kinase; a 97.6 2.3E-05 7.8E-10 66.3 2.8 21 47-67 3-23 (204)
238 2wjg_A FEOB, ferrous iron tran 97.6 4.1E-05 1.4E-09 63.2 4.2 22 47-68 9-30 (188)
239 3h4m_A Proteasome-activating n 97.6 0.00014 4.8E-09 64.5 8.0 28 42-69 48-75 (285)
240 2i1q_A DNA repair and recombin 97.6 0.00014 4.9E-09 66.2 7.8 27 41-67 94-120 (322)
241 2ohf_A Protein OLA1, GTP-bindi 97.6 3.6E-05 1.2E-09 72.9 3.7 41 41-81 18-69 (396)
242 2qor_A Guanylate kinase; phosp 97.6 3.2E-05 1.1E-09 65.8 3.1 30 41-70 8-37 (204)
243 2v1u_A Cell division control p 97.5 5E-05 1.7E-09 69.7 4.2 28 43-70 42-69 (387)
244 1njg_A DNA polymerase III subu 97.5 0.00021 7.3E-09 60.3 7.5 45 158-204 125-169 (250)
245 1ypw_A Transitional endoplasmi 97.5 1E-05 3.5E-10 83.2 -1.4 31 39-69 505-535 (806)
246 2zej_A Dardarin, leucine-rich 97.4 7E-05 2.4E-09 62.1 3.1 26 47-72 4-29 (184)
247 1xp8_A RECA protein, recombina 97.4 0.00095 3.2E-08 62.5 10.9 123 41-201 70-211 (366)
248 1q57_A DNA primase/helicase; d 97.4 0.0011 3.6E-08 64.3 11.6 148 35-200 232-403 (503)
249 3cm0_A Adenylate kinase; ATP-b 97.4 8E-05 2.7E-09 61.7 3.1 25 43-67 2-26 (186)
250 1np6_A Molybdopterin-guanine d 97.4 5.8E-05 2E-09 63.4 2.2 35 46-80 7-44 (174)
251 3t61_A Gluconokinase; PSI-biol 97.4 7.1E-05 2.4E-09 63.2 2.7 25 45-69 18-42 (202)
252 2ga8_A Hypothetical 39.9 kDa p 97.3 1.9E-05 6.4E-10 73.8 -1.2 37 33-69 10-48 (359)
253 2p5t_B PEZT; postsegregational 97.3 7.9E-05 2.7E-09 65.7 2.6 41 41-83 28-68 (253)
254 1q3t_A Cytidylate kinase; nucl 97.3 0.00011 3.6E-09 64.0 3.3 28 41-68 12-39 (236)
255 3io5_A Recombination and repai 97.3 0.00061 2.1E-08 62.8 8.3 124 42-202 26-173 (333)
256 1lv7_A FTSH; alpha/beta domain 97.2 9E-05 3.1E-09 65.0 1.9 34 35-70 37-70 (257)
257 2r8r_A Sensor protein; KDPD, P 97.2 0.00011 3.9E-09 64.3 2.5 47 153-199 78-125 (228)
258 2b8t_A Thymidine kinase; deoxy 97.2 0.0011 3.7E-08 57.9 8.5 51 159-214 89-150 (223)
259 3r20_A Cytidylate kinase; stru 97.2 7E-05 2.4E-09 65.9 0.7 25 45-69 9-33 (233)
260 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00098 3.3E-08 61.5 8.4 28 40-67 118-145 (331)
261 3kb2_A SPBC2 prophage-derived 97.2 0.0002 7E-09 58.1 3.3 23 47-69 3-25 (173)
262 4ag6_A VIRB4 ATPase, type IV s 97.2 0.00011 3.8E-09 68.8 1.8 46 159-204 262-310 (392)
263 3lxw_A GTPase IMAP family memb 97.1 0.00086 2.9E-08 58.9 7.3 56 146-202 89-150 (247)
264 1qhx_A CPT, protein (chloramph 97.1 0.00028 9.6E-09 57.9 3.6 26 45-70 3-28 (178)
265 3d8b_A Fidgetin-like protein 1 97.1 0.0016 5.5E-08 60.2 9.1 27 43-69 115-141 (357)
266 1kht_A Adenylate kinase; phosp 97.1 0.0003 1E-08 58.1 3.5 26 44-69 2-27 (192)
267 3bgw_A DNAB-like replicative h 97.1 0.00063 2.1E-08 65.2 6.0 128 34-199 186-318 (444)
268 1vht_A Dephospho-COA kinase; s 97.1 0.00032 1.1E-08 59.9 3.5 24 44-67 3-26 (218)
269 3n70_A Transport activator; si 97.0 0.0016 5.5E-08 52.2 7.5 29 43-71 22-50 (145)
270 3syl_A Protein CBBX; photosynt 97.0 0.0066 2.2E-07 54.1 12.1 27 43-69 65-91 (309)
271 3lw7_A Adenylate kinase relate 97.0 0.00033 1.1E-08 56.6 3.2 19 47-65 3-21 (179)
272 2rhm_A Putative kinase; P-loop 97.0 0.00033 1.1E-08 58.1 3.0 27 43-69 3-29 (193)
273 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.0077 2.6E-07 54.9 12.5 27 43-69 43-69 (322)
274 3ihw_A Centg3; RAS, centaurin, 97.0 0.00081 2.8E-08 55.8 5.4 36 47-82 22-66 (184)
275 1gtv_A TMK, thymidylate kinase 97.0 9.8E-05 3.4E-09 62.5 -0.3 25 47-71 2-26 (214)
276 2zts_A Putative uncharacterize 97.0 0.0015 5.3E-08 56.0 7.2 46 156-201 132-182 (251)
277 2ze6_A Isopentenyl transferase 97.0 0.00034 1.2E-08 61.8 3.1 24 46-69 2-25 (253)
278 1jal_A YCHF protein; nucleotid 96.9 0.00061 2.1E-08 63.7 4.7 36 45-80 2-48 (363)
279 2jaq_A Deoxyguanosine kinase; 96.9 0.00044 1.5E-08 57.7 3.3 23 47-69 2-24 (205)
280 3cmw_A Protein RECA, recombina 96.9 0.0044 1.5E-07 68.1 11.6 137 41-216 728-901 (1706)
281 1uf9_A TT1252 protein; P-loop, 96.9 0.00042 1.4E-08 57.9 2.9 31 45-80 8-38 (203)
282 1via_A Shikimate kinase; struc 96.9 0.00041 1.4E-08 57.1 2.8 23 47-69 6-28 (175)
283 2v54_A DTMP kinase, thymidylat 96.9 0.00057 2E-08 57.2 3.6 26 44-69 3-28 (204)
284 1fzq_A ADP-ribosylation factor 96.9 0.00052 1.8E-08 56.6 3.3 23 47-69 18-40 (181)
285 3trf_A Shikimate kinase, SK; a 96.9 0.00059 2E-08 56.4 3.4 26 44-69 4-29 (185)
286 1ly1_A Polynucleotide kinase; 96.9 0.00057 2E-08 55.8 3.3 22 46-67 3-24 (181)
287 1ex7_A Guanylate kinase; subst 96.9 0.00052 1.8E-08 58.2 3.1 23 47-69 3-25 (186)
288 3k53_A Ferrous iron transport 96.9 0.00046 1.6E-08 61.3 2.9 44 168-211 144-189 (271)
289 3iij_A Coilin-interacting nucl 96.9 0.00052 1.8E-08 56.7 3.0 26 43-68 9-34 (180)
290 2plr_A DTMP kinase, probable t 96.8 0.00067 2.3E-08 57.0 3.6 28 44-71 3-30 (213)
291 1gvn_B Zeta; postsegregational 96.8 0.00057 2E-08 61.6 3.2 37 42-80 30-66 (287)
292 4fcw_A Chaperone protein CLPB; 96.8 0.00046 1.6E-08 61.8 2.5 47 30-76 21-78 (311)
293 1tev_A UMP-CMP kinase; ploop, 96.8 0.00073 2.5E-08 55.8 3.5 25 44-68 2-26 (196)
294 2c95_A Adenylate kinase 1; tra 96.8 0.00063 2.2E-08 56.5 3.1 27 43-69 7-33 (196)
295 3dm5_A SRP54, signal recogniti 96.8 0.0055 1.9E-07 58.7 9.9 28 44-71 99-126 (443)
296 2wwf_A Thymidilate kinase, put 96.8 0.00071 2.4E-08 57.0 3.3 27 43-69 8-34 (212)
297 3co5_A Putative two-component 96.8 0.0022 7.6E-08 51.3 6.1 40 159-199 75-114 (143)
298 1nn5_A Similar to deoxythymidy 96.7 0.00081 2.8E-08 56.7 3.3 28 42-69 6-33 (215)
299 3ake_A Cytidylate kinase; CMP 96.7 0.00087 3E-08 56.2 3.0 23 47-69 4-26 (208)
300 1nks_A Adenylate kinase; therm 96.7 0.0009 3.1E-08 55.2 3.0 24 47-70 3-26 (194)
301 2vli_A Antibiotic resistance p 96.6 0.00073 2.5E-08 55.6 2.3 26 44-69 4-29 (183)
302 2z0h_A DTMP kinase, thymidylat 96.6 0.001 3.6E-08 55.2 3.3 23 47-69 2-24 (197)
303 3cmu_A Protein RECA, recombina 96.6 0.0085 2.9E-07 66.8 11.2 136 42-216 380-552 (2050)
304 1xjc_A MOBB protein homolog; s 96.6 0.001 3.5E-08 55.6 3.1 26 46-71 5-30 (169)
305 3zvl_A Bifunctional polynucleo 96.6 0.011 3.8E-07 55.9 10.6 27 42-68 255-281 (416)
306 2ged_A SR-beta, signal recogni 96.6 0.00095 3.2E-08 55.1 2.8 23 47-69 50-72 (193)
307 4dcu_A GTP-binding protein ENG 96.6 0.0012 4.2E-08 63.1 4.0 56 145-204 88-144 (456)
308 1ko7_A HPR kinase/phosphatase; 96.5 0.0024 8.2E-08 58.5 5.4 36 31-67 131-166 (314)
309 1aky_A Adenylate kinase; ATP:A 96.5 0.0014 4.9E-08 55.9 3.6 26 44-69 3-28 (220)
310 2bwj_A Adenylate kinase 5; pho 96.5 0.0012 4.3E-08 54.8 3.2 28 42-69 9-36 (199)
311 3b1v_A Ferrous iron uptake tra 96.5 0.0013 4.5E-08 58.8 3.4 23 47-69 5-27 (272)
312 2nzj_A GTP-binding protein REM 96.5 0.0014 4.7E-08 52.8 3.2 23 47-69 6-28 (175)
313 1z0j_A RAB-22, RAS-related pro 96.5 0.0017 6E-08 51.8 3.8 23 47-69 8-30 (170)
314 2erx_A GTP-binding protein DI- 96.5 0.0014 4.9E-08 52.4 3.2 22 47-68 5-26 (172)
315 1z2a_A RAS-related protein RAB 96.5 0.0012 4.2E-08 52.6 2.8 23 47-69 7-29 (168)
316 3q72_A GTP-binding protein RAD 96.5 0.0011 3.8E-08 53.0 2.5 24 47-70 4-27 (166)
317 1zd8_A GTP:AMP phosphotransfer 96.5 0.0014 4.9E-08 56.3 3.2 27 43-69 5-31 (227)
318 3q85_A GTP-binding protein REM 96.5 0.0015 5.2E-08 52.3 3.1 22 48-69 5-26 (169)
319 2dyk_A GTP-binding protein; GT 96.5 0.0014 4.7E-08 52.1 2.8 23 47-69 3-25 (161)
320 3cmu_A Protein RECA, recombina 96.5 0.013 4.6E-07 65.3 11.4 26 42-67 1424-1449(2050)
321 2ce2_X GTPase HRAS; signaling 96.4 0.0012 4.2E-08 52.2 2.5 23 47-69 5-27 (166)
322 3hu3_A Transitional endoplasmi 96.4 0.0068 2.3E-07 58.7 8.1 28 42-69 235-262 (489)
323 1kao_A RAP2A; GTP-binding prot 96.4 0.0014 4.9E-08 52.0 2.8 22 47-68 5-26 (167)
324 2pbr_A DTMP kinase, thymidylat 96.4 0.0016 5.6E-08 53.7 3.3 23 47-69 2-24 (195)
325 3tw8_B RAS-related protein RAB 96.4 0.0014 4.8E-08 53.0 2.8 23 47-69 11-33 (181)
326 3cbq_A GTP-binding protein REM 96.4 0.0014 4.9E-08 54.8 2.9 22 47-68 25-46 (195)
327 1u8z_A RAS-related protein RAL 96.4 0.0014 4.9E-08 52.0 2.8 23 47-69 6-28 (168)
328 1ukz_A Uridylate kinase; trans 96.4 0.0018 6E-08 54.4 3.4 26 44-69 14-39 (203)
329 2cdn_A Adenylate kinase; phosp 96.4 0.0019 6.5E-08 54.2 3.6 26 44-69 19-44 (201)
330 3fb4_A Adenylate kinase; psych 96.4 0.0017 6E-08 55.0 3.3 22 47-68 2-23 (216)
331 1qf9_A UMP/CMP kinase, protein 96.4 0.0017 5.9E-08 53.4 3.1 24 45-68 6-29 (194)
332 1z08_A RAS-related protein RAB 96.4 0.0016 5.3E-08 52.2 2.8 23 47-69 8-30 (170)
333 1ek0_A Protein (GTP-binding pr 96.4 0.0015 5.3E-08 52.1 2.8 22 48-69 6-27 (170)
334 1e6c_A Shikimate kinase; phosp 96.4 0.0016 5.4E-08 53.0 2.8 24 46-69 3-26 (173)
335 1ky3_A GTP-binding protein YPT 96.4 0.0016 5.5E-08 52.7 2.8 23 47-69 10-32 (182)
336 2lkc_A Translation initiation 96.4 0.0023 7.8E-08 51.7 3.7 26 44-69 7-32 (178)
337 1zak_A Adenylate kinase; ATP:A 96.4 0.0015 5.1E-08 55.9 2.7 26 44-69 4-29 (222)
338 1c1y_A RAS-related protein RAP 96.4 0.0016 5.5E-08 51.9 2.8 22 47-68 5-26 (167)
339 1svi_A GTP-binding protein YSX 96.4 0.0015 5.1E-08 53.9 2.6 24 46-69 24-47 (195)
340 1g16_A RAS-related protein SEC 96.4 0.0015 5.1E-08 52.3 2.5 22 48-69 6-27 (170)
341 3pqc_A Probable GTP-binding pr 96.4 0.0015 5.3E-08 53.5 2.6 23 47-69 25-47 (195)
342 1zuh_A Shikimate kinase; alpha 96.4 0.0021 7E-08 52.3 3.4 24 45-68 7-30 (168)
343 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0017 5.7E-08 52.5 2.8 23 47-69 9-31 (177)
344 2pt5_A Shikimate kinase, SK; a 96.3 0.0021 7.1E-08 52.1 3.4 22 47-68 2-23 (168)
345 1moz_A ARL1, ADP-ribosylation 96.3 0.001 3.6E-08 54.2 1.5 23 45-67 18-40 (183)
346 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0022 7.6E-08 56.6 3.6 25 44-68 3-27 (260)
347 2cxx_A Probable GTP-binding pr 96.3 0.0017 5.8E-08 53.1 2.7 22 48-69 4-25 (190)
348 3dl0_A Adenylate kinase; phosp 96.3 0.0021 7.2E-08 54.5 3.3 23 47-69 2-24 (216)
349 2fn4_A P23, RAS-related protei 96.3 0.0017 5.8E-08 52.5 2.5 22 47-68 11-32 (181)
350 3u61_B DNA polymerase accessor 96.3 0.015 5.2E-07 52.3 9.0 44 159-204 105-149 (324)
351 1r2q_A RAS-related protein RAB 96.3 0.002 6.8E-08 51.4 2.8 22 47-68 8-29 (170)
352 4dsu_A GTPase KRAS, isoform 2B 96.3 0.002 6.8E-08 52.5 2.8 23 47-69 6-28 (189)
353 2iyv_A Shikimate kinase, SK; t 96.3 0.0018 6.3E-08 53.4 2.6 23 46-68 3-25 (184)
354 3clv_A RAB5 protein, putative; 96.3 0.002 6.9E-08 52.8 2.8 23 47-69 9-31 (208)
355 2oil_A CATX-8, RAS-related pro 96.2 0.002 6.8E-08 53.2 2.8 23 47-69 27-49 (193)
356 1upt_A ARL1, ADP-ribosylation 96.2 0.0021 7.1E-08 51.5 2.8 22 47-68 9-30 (171)
357 2hxs_A RAB-26, RAS-related pro 96.2 0.0023 8E-08 51.7 3.1 23 47-69 8-30 (178)
358 3bc1_A RAS-related protein RAB 96.2 0.0021 7.1E-08 52.5 2.8 23 47-69 13-35 (195)
359 3t1o_A Gliding protein MGLA; G 96.2 0.0021 7.3E-08 52.7 2.8 24 47-70 16-39 (198)
360 1r8s_A ADP-ribosylation factor 96.2 0.0023 7.8E-08 51.0 2.8 20 48-67 3-22 (164)
361 1wf3_A GTP-binding protein; GT 96.2 0.0026 8.8E-08 57.7 3.4 23 47-69 9-31 (301)
362 2xb4_A Adenylate kinase; ATP-b 96.2 0.0028 9.4E-08 54.5 3.3 23 47-69 2-24 (223)
363 1uj2_A Uridine-cytidine kinase 96.2 0.0027 9.1E-08 55.6 3.3 24 46-69 23-46 (252)
364 2a9k_A RAS-related protein RAL 96.2 0.0024 8.1E-08 51.9 2.8 23 47-69 20-42 (187)
365 1z0f_A RAB14, member RAS oncog 96.2 0.0024 8.3E-08 51.4 2.8 23 47-69 17-39 (179)
366 2y8e_A RAB-protein 6, GH09086P 96.2 0.0022 7.5E-08 51.7 2.5 22 47-68 16-37 (179)
367 2grj_A Dephospho-COA kinase; T 96.2 0.0029 9.8E-08 53.7 3.3 23 46-68 13-35 (192)
368 3con_A GTPase NRAS; structural 96.1 0.0025 8.4E-08 52.4 2.8 23 47-69 23-45 (190)
369 2g6b_A RAS-related protein RAB 96.1 0.0025 8.5E-08 51.6 2.8 23 47-69 12-34 (180)
370 3cmw_A Protein RECA, recombina 96.1 0.019 6.4E-07 63.3 10.3 129 33-200 369-519 (1706)
371 3tlx_A Adenylate kinase 2; str 96.1 0.0032 1.1E-07 55.0 3.6 25 44-68 28-52 (243)
372 3euj_A Chromosome partition pr 96.1 0.01 3.4E-07 57.5 7.3 72 137-214 375-464 (483)
373 3iev_A GTP-binding protein ERA 96.1 0.003 1E-07 57.3 3.4 23 47-69 12-34 (308)
374 1jbk_A CLPB protein; beta barr 96.1 0.0035 1.2E-07 50.8 3.5 27 43-69 41-67 (195)
375 3iby_A Ferrous iron transport 96.1 0.0026 8.8E-08 56.3 2.8 23 47-69 3-25 (256)
376 2efe_B Small GTP-binding prote 96.1 0.0028 9.4E-08 51.4 2.8 23 47-69 14-36 (181)
377 3t5d_A Septin-7; GTP-binding p 96.1 0.0023 8E-08 56.7 2.5 23 47-69 10-32 (274)
378 2dby_A GTP-binding protein; GD 96.1 0.0025 8.6E-08 59.6 2.8 21 48-68 4-24 (368)
379 1nrj_B SR-beta, signal recogni 96.1 0.0027 9.3E-08 53.5 2.8 23 47-69 14-36 (218)
380 1ksh_A ARF-like protein 2; sma 96.1 0.003 1E-07 51.7 2.9 26 44-69 17-42 (186)
381 2qmh_A HPR kinase/phosphorylas 96.1 0.0055 1.9E-07 52.7 4.6 38 30-68 20-57 (205)
382 2bme_A RAB4A, RAS-related prot 96.1 0.0026 8.8E-08 51.9 2.5 23 47-69 12-34 (186)
383 2bov_A RAla, RAS-related prote 96.0 0.0029 9.8E-08 52.5 2.8 23 47-69 16-38 (206)
384 1a7j_A Phosphoribulokinase; tr 96.0 0.0017 5.7E-08 58.7 1.4 26 44-69 4-29 (290)
385 1vg8_A RAS-related protein RAB 96.0 0.003 1E-07 52.5 2.8 23 47-69 10-32 (207)
386 3tkl_A RAS-related protein RAB 96.0 0.003 1E-07 52.0 2.8 23 47-69 18-40 (196)
387 2gf9_A RAS-related protein RAB 96.0 0.003 1E-07 52.0 2.8 23 47-69 24-46 (189)
388 4edh_A DTMP kinase, thymidylat 96.0 0.0039 1.3E-07 53.7 3.6 29 43-71 4-32 (213)
389 2f6r_A COA synthase, bifunctio 96.0 0.0032 1.1E-07 56.4 3.0 23 45-67 75-97 (281)
390 1m7b_A RND3/RHOE small GTP-bin 96.0 0.0028 9.6E-08 52.0 2.5 23 47-69 9-31 (184)
391 2xtp_A GTPase IMAP family memb 96.0 0.0031 1.1E-07 55.1 2.9 23 47-69 24-46 (260)
392 4dhe_A Probable GTP-binding pr 96.0 0.002 6.8E-08 54.5 1.5 24 46-69 30-53 (223)
393 2gf0_A GTP-binding protein DI- 96.0 0.0029 9.9E-08 52.2 2.5 22 47-68 10-31 (199)
394 1mh1_A RAC1; GTP-binding, GTPa 96.0 0.0033 1.1E-07 51.1 2.8 22 47-68 7-28 (186)
395 3a1s_A Iron(II) transport prot 96.0 0.0035 1.2E-07 55.4 3.2 23 47-69 7-29 (258)
396 3kkq_A RAS-related protein M-R 96.0 0.0043 1.5E-07 50.5 3.4 22 47-68 20-41 (183)
397 2fg5_A RAB-22B, RAS-related pr 96.0 0.003 1E-07 52.3 2.5 23 47-69 25-47 (192)
398 1zbd_A Rabphilin-3A; G protein 96.0 0.0038 1.3E-07 51.9 3.1 23 47-69 10-32 (203)
399 1sky_E F1-ATPase, F1-ATP synth 96.0 0.0014 4.6E-08 63.4 0.4 45 32-77 139-183 (473)
400 3cnl_A YLQF, putative uncharac 96.0 0.0041 1.4E-07 55.3 3.5 30 46-75 100-129 (262)
401 3v9p_A DTMP kinase, thymidylat 95.9 0.0035 1.2E-07 54.7 2.9 28 43-70 23-50 (227)
402 2il1_A RAB12; G-protein, GDP, 95.9 0.0034 1.2E-07 52.0 2.7 23 47-69 28-50 (192)
403 3i8s_A Ferrous iron transport 95.9 0.0035 1.2E-07 55.8 2.9 23 47-69 5-27 (274)
404 1z06_A RAS-related protein RAB 95.9 0.0037 1.3E-07 51.4 2.8 22 47-68 22-43 (189)
405 3be4_A Adenylate kinase; malar 95.9 0.0039 1.3E-07 53.2 3.0 26 44-69 4-29 (217)
406 2a5j_A RAS-related protein RAB 95.9 0.0037 1.3E-07 51.6 2.8 23 47-69 23-45 (191)
407 2o52_A RAS-related protein RAB 95.9 0.0038 1.3E-07 52.2 2.9 23 47-69 27-49 (200)
408 2wsm_A Hydrogenase expression/ 95.9 0.0036 1.2E-07 52.9 2.8 24 46-69 31-54 (221)
409 2cjw_A GTP-binding protein GEM 95.9 0.0037 1.3E-07 52.1 2.8 21 47-67 8-28 (192)
410 1e4v_A Adenylate kinase; trans 95.9 0.0039 1.3E-07 52.9 3.0 22 47-68 2-23 (214)
411 3t5g_A GTP-binding protein RHE 95.9 0.0034 1.2E-07 51.0 2.5 21 47-67 8-28 (181)
412 2h57_A ADP-ribosylation factor 95.9 0.0028 9.7E-08 52.2 2.0 23 47-69 23-45 (190)
413 3oes_A GTPase rhebl1; small GT 95.9 0.0033 1.1E-07 52.4 2.5 23 47-69 26-48 (201)
414 1zj6_A ADP-ribosylation factor 95.9 0.0039 1.3E-07 51.2 2.8 22 47-68 18-39 (187)
415 1ltq_A Polynucleotide kinase; 95.9 0.0044 1.5E-07 55.3 3.3 22 46-67 3-24 (301)
416 4bas_A ADP-ribosylation factor 95.9 0.0039 1.3E-07 51.4 2.8 23 47-69 19-41 (199)
417 3bwd_D RAC-like GTP-binding pr 95.9 0.0039 1.3E-07 50.5 2.8 22 47-68 10-31 (182)
418 3lv8_A DTMP kinase, thymidylat 95.9 0.0046 1.6E-07 54.3 3.3 27 44-70 26-52 (236)
419 3dz8_A RAS-related protein RAB 95.9 0.0035 1.2E-07 51.7 2.5 23 47-69 25-47 (191)
420 3reg_A RHO-like small GTPase; 95.9 0.0039 1.3E-07 51.5 2.8 23 47-69 25-47 (194)
421 2orv_A Thymidine kinase; TP4A 95.9 0.041 1.4E-06 48.2 9.3 51 158-214 89-150 (234)
422 2iwr_A Centaurin gamma 1; ANK 95.8 0.0035 1.2E-07 50.8 2.3 22 47-68 9-30 (178)
423 2qu8_A Putative nucleolar GTP- 95.8 0.0041 1.4E-07 53.1 2.9 23 47-69 31-53 (228)
424 1x3s_A RAS-related protein RAB 95.8 0.0041 1.4E-07 51.0 2.8 23 47-69 17-39 (195)
425 2atv_A RERG, RAS-like estrogen 95.8 0.0041 1.4E-07 51.5 2.8 22 47-68 30-51 (196)
426 1jwy_B Dynamin A GTPase domain 95.8 0.0043 1.5E-07 55.6 3.1 24 47-70 26-49 (315)
427 2ew1_A RAS-related protein RAB 95.8 0.0037 1.2E-07 52.7 2.5 22 47-68 28-49 (201)
428 2p65_A Hypothetical protein PF 95.8 0.0046 1.6E-07 50.1 3.0 27 44-70 42-68 (187)
429 4tmk_A Protein (thymidylate ki 95.8 0.005 1.7E-07 53.1 3.4 27 44-70 2-28 (213)
430 1zd9_A ADP-ribosylation factor 95.8 0.0041 1.4E-07 51.2 2.8 22 47-68 24-45 (188)
431 2h17_A ADP-ribosylation factor 95.8 0.0036 1.2E-07 51.2 2.4 23 47-69 23-45 (181)
432 2f7s_A C25KG, RAS-related prot 95.8 0.0049 1.7E-07 51.9 3.2 24 47-70 27-50 (217)
433 2p5s_A RAS and EF-hand domain 95.8 0.0042 1.4E-07 51.7 2.8 23 47-69 30-52 (199)
434 1ak2_A Adenylate kinase isoenz 95.8 0.0056 1.9E-07 52.8 3.6 26 44-69 15-40 (233)
435 3cph_A RAS-related protein SEC 95.8 0.0042 1.4E-07 51.8 2.8 23 47-69 22-44 (213)
436 3llu_A RAS-related GTP-binding 95.8 0.0048 1.6E-07 51.3 3.1 24 47-70 22-45 (196)
437 2bcg_Y Protein YP2, GTP-bindin 95.8 0.0039 1.3E-07 52.0 2.5 23 47-69 10-32 (206)
438 2q3h_A RAS homolog gene family 95.8 0.005 1.7E-07 51.1 3.1 23 47-69 22-44 (201)
439 3pxi_A Negative regulator of g 95.7 0.015 5E-07 59.1 7.0 23 47-69 523-545 (758)
440 2j1l_A RHO-related GTP-binding 95.7 0.0049 1.7E-07 52.1 2.9 22 47-68 36-57 (214)
441 2h92_A Cytidylate kinase; ross 95.7 0.0049 1.7E-07 52.2 2.9 25 45-69 3-27 (219)
442 2ocp_A DGK, deoxyguanosine kin 95.7 0.0058 2E-07 52.9 3.3 27 44-70 1-27 (241)
443 2fv8_A H6, RHO-related GTP-bin 95.7 0.0045 1.5E-07 51.9 2.5 23 47-69 27-49 (207)
444 3tmk_A Thymidylate kinase; pho 95.7 0.0061 2.1E-07 52.8 3.4 29 43-71 3-31 (216)
445 3c5c_A RAS-like protein 12; GD 95.7 0.0052 1.8E-07 50.7 2.8 22 47-68 23-44 (187)
446 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.0058 2E-07 52.9 3.2 27 43-69 37-63 (262)
447 3d3q_A TRNA delta(2)-isopenten 95.7 0.0057 2E-07 56.6 3.3 25 46-70 8-32 (340)
448 1gwn_A RHO-related GTP-binding 95.7 0.0046 1.6E-07 52.2 2.5 23 47-69 30-52 (205)
449 1qvr_A CLPB protein; coiled co 95.7 0.01 3.6E-07 61.1 5.6 26 46-71 589-614 (854)
450 3ld9_A DTMP kinase, thymidylat 95.6 0.0069 2.4E-07 52.7 3.6 28 43-70 19-46 (223)
451 2fu5_C RAS-related protein RAB 95.6 0.0034 1.2E-07 51.1 1.5 23 47-69 10-32 (183)
452 2fh5_B SR-beta, signal recogni 95.6 0.0072 2.5E-07 50.7 3.6 23 47-69 9-31 (214)
453 2b6h_A ADP-ribosylation factor 95.6 0.0051 1.7E-07 51.1 2.5 22 47-68 31-52 (192)
454 2aka_B Dynamin-1; fusion prote 95.6 0.0052 1.8E-07 54.5 2.6 24 47-70 28-51 (299)
455 3umf_A Adenylate kinase; rossm 95.6 0.0072 2.4E-07 52.4 3.4 30 39-68 23-52 (217)
456 2gco_A H9, RHO-related GTP-bin 95.6 0.0053 1.8E-07 51.2 2.5 23 47-69 27-49 (201)
457 3exa_A TRNA delta(2)-isopenten 95.6 0.0075 2.6E-07 55.3 3.6 25 45-69 3-27 (322)
458 1h65_A Chloroplast outer envel 95.6 0.0059 2E-07 53.9 2.8 23 47-69 41-63 (270)
459 3def_A T7I23.11 protein; chlor 95.6 0.006 2.1E-07 53.7 2.9 23 47-69 38-60 (262)
460 2atx_A Small GTP binding prote 95.5 0.0057 2E-07 50.4 2.5 22 47-68 20-41 (194)
461 3a8t_A Adenylate isopentenyltr 95.5 0.009 3.1E-07 55.3 4.0 26 44-69 39-64 (339)
462 4djt_A GTP-binding nuclear pro 95.5 0.0032 1.1E-07 53.0 0.8 23 47-69 13-35 (218)
463 1p5z_B DCK, deoxycytidine kina 95.5 0.0051 1.7E-07 54.1 2.2 27 43-69 22-48 (263)
464 2r62_A Cell division protease 95.5 0.0015 5.3E-08 57.2 -1.3 28 39-68 40-67 (268)
465 3crm_A TRNA delta(2)-isopenten 95.4 0.0078 2.7E-07 55.3 3.3 24 46-69 6-29 (323)
466 2v3c_C SRP54, signal recogniti 95.4 0.0017 5.7E-08 62.1 -1.2 32 40-71 92-125 (432)
467 2g3y_A GTP-binding protein GEM 95.4 0.008 2.7E-07 51.4 3.2 22 47-68 39-60 (211)
468 2hf9_A Probable hydrogenase ni 95.4 0.0072 2.5E-07 51.2 2.7 24 46-69 39-62 (226)
469 2yc2_C IFT27, small RAB-relate 95.4 0.0033 1.1E-07 52.1 0.5 22 47-68 22-43 (208)
470 2orw_A Thymidine kinase; TMTK, 95.3 0.0097 3.3E-07 49.8 3.3 39 159-202 76-114 (184)
471 2hup_A RAS-related protein RAB 95.3 0.0073 2.5E-07 50.5 2.5 23 47-69 31-53 (201)
472 2x77_A ADP-ribosylation factor 95.3 0.0051 1.7E-07 50.5 1.5 21 47-67 24-44 (189)
473 3cpj_B GTP-binding protein YPT 95.3 0.0084 2.9E-07 50.9 2.8 23 47-69 15-37 (223)
474 4hlc_A DTMP kinase, thymidylat 95.3 0.011 3.8E-07 50.5 3.5 26 45-70 2-27 (205)
475 4gzl_A RAS-related C3 botulinu 95.2 0.0079 2.7E-07 50.4 2.5 21 47-67 32-52 (204)
476 3q3j_B RHO-related GTP-binding 95.2 0.0091 3.1E-07 50.6 2.8 22 47-68 29-50 (214)
477 2chg_A Replication factor C sm 95.1 0.011 3.9E-07 48.9 3.0 45 158-204 101-145 (226)
478 3foz_A TRNA delta(2)-isopenten 95.1 0.013 4.5E-07 53.6 3.6 25 45-69 10-34 (316)
479 2j0v_A RAC-like GTP-binding pr 95.1 0.0094 3.2E-07 49.9 2.5 22 47-68 11-32 (212)
480 3sr0_A Adenylate kinase; phosp 95.1 0.013 4.3E-07 50.3 3.3 22 47-68 2-23 (206)
481 3pvs_A Replication-associated 94.8 0.0074 2.5E-07 57.8 1.3 36 36-71 39-76 (447)
482 3uk6_A RUVB-like 2; hexameric 94.8 0.013 4.3E-07 53.6 2.8 29 43-71 68-96 (368)
483 1puj_A YLQF, conserved hypothe 94.7 0.021 7E-07 51.2 3.9 26 46-71 121-146 (282)
484 3p32_A Probable GTPase RV1496/ 94.7 0.012 4E-07 54.4 2.4 27 44-70 78-104 (355)
485 3tqf_A HPR(Ser) kinase; transf 94.7 0.035 1.2E-06 46.7 5.0 33 34-67 6-38 (181)
486 2a5y_B CED-4; apoptosis; HET: 94.6 0.76 2.6E-05 44.5 15.2 23 45-67 152-174 (549)
487 3gj0_A GTP-binding nuclear pro 94.6 0.011 3.7E-07 50.0 1.7 22 47-68 17-39 (221)
488 1wxq_A GTP-binding protein; st 94.6 0.015 5.2E-07 54.7 2.9 22 48-69 3-24 (397)
489 3th5_A RAS-related C3 botulinu 93.6 0.006 2E-07 50.9 0.0 21 47-67 32-52 (204)
490 3eph_A TRNA isopentenyltransfe 94.6 0.019 6.4E-07 54.4 3.3 24 46-69 3-26 (409)
491 1d2n_A N-ethylmaleimide-sensit 94.5 0.018 6.2E-07 50.5 3.0 26 43-68 62-87 (272)
492 1ofh_A ATP-dependent HSL prote 94.5 0.019 6.3E-07 50.8 3.1 25 45-69 50-74 (310)
493 2qgz_A Helicase loader, putati 94.5 0.022 7.6E-07 51.6 3.5 26 45-70 152-177 (308)
494 3t15_A Ribulose bisphosphate c 94.5 0.02 6.7E-07 51.4 3.2 26 44-69 35-60 (293)
495 3l0i_B RAS-related protein RAB 94.4 0.0039 1.3E-07 51.9 -1.5 23 47-69 35-57 (199)
496 2hjg_A GTP-binding protein ENG 94.4 0.017 5.7E-07 54.8 2.7 22 47-68 5-26 (436)
497 2qby_B CDC6 homolog 3, cell di 94.4 0.022 7.4E-07 52.1 3.4 26 44-69 44-69 (384)
498 3hws_A ATP-dependent CLP prote 94.4 0.02 6.8E-07 52.6 3.1 26 44-69 50-75 (363)
499 3gmt_A Adenylate kinase; ssgci 94.3 0.023 7.8E-07 49.7 3.1 22 47-68 10-31 (230)
500 3eie_A Vacuolar protein sortin 94.3 0.026 8.9E-07 51.1 3.6 26 44-69 50-75 (322)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=8.6e-61 Score=450.81 Aligned_cols=213 Identities=31% Similarity=0.458 Sum_probs=198.9
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------CeE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~i 86 (291)
.+|+++|++|+|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ ++|
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 478999999999999999999999999999999999999999999999999999999999999876 459
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|||||++.+|+.+||+||+.|+....+.+..+.++++.++++.++|.. .++++.+|||||||||+|||||+.+|++|||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL 162 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL 162 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999776666666777788999999999976 7999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+|||+..+..+++.|.++. +.|+|+|+||||++++.. ||||++|++|+++..|+++++...
T Consensus 163 DEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 163 DEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999888875 569999999999999976 999999999999999999988654
No 2
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.2e-60 Score=429.70 Aligned_cols=220 Identities=26% Similarity=0.435 Sum_probs=195.5
Q ss_pred CcccccccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-----
Q psy6612 10 DPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----- 84 (291)
Q Consensus 10 ~~~~~~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----- 84 (291)
.|..-.++.||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 15 ~~~~~~m~~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 15 VPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTN 94 (263)
T ss_dssp -------CCSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCC
T ss_pred ccCCCCchheEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCcccc
Confidence 354445566899999999999999999999999999999999999999999999999999999999999998762
Q ss_pred ------eEEEEcCCCCCCCCCCHHHHHHHhc-cccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 85 ------DIGYMPQELALHGELSIRETFRYYG-YMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 85 ------~ig~v~q~~~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
.+||+||++.+++.+||+||+.++. ...+.+..+.++++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 95 ~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL 174 (263)
T 2olj_A 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL 174 (263)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 4999999999999999999998853 3344455555678889999999976 6899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999998779999999999999976 99999999999999999887654
No 3
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.6e-60 Score=421.27 Aligned_cols=207 Identities=27% Similarity=0.355 Sum_probs=190.4
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------- 83 (291)
+.||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 2 ~~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 2 AEILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred CcEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 3578999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
+.+||+||++.+++.+||+||+.++...++.+..+.++++.++++.+++.. .++++++|||||||||+|||||+++|++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL 161 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 249999999999999999999988655445554555677889999999976 6899999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEec
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~ 223 (291)
|||||||+|||+.++..++++|++++++|+|||++|||++++..||++++|++|+++.+|+
T Consensus 162 llLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 162 LFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999867999999999999985599999999999998876
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.8e-60 Score=449.27 Aligned_cols=214 Identities=26% Similarity=0.442 Sum_probs=198.4
Q ss_pred ccceEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------
Q psy6612 16 VKHSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------- 83 (291)
.+.||+++|++|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 4568999999999963 5799999999999999999999999999999999999999999999999986
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
++|||+||++.+++.+||+||+.++...++.+.++.++++.++++.+|+.. .++++++|||||||||+|||||++
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 359999999999999999999999877777777778889999999999976 789999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|++|||||||+|||+.++..++++|+++++ .|+|||+||||++++.. |||+++|++|+++++|+++++..
T Consensus 181 ~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999974 59999999999999976 99999999999999999988754
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3e-60 Score=450.04 Aligned_cols=212 Identities=28% Similarity=0.437 Sum_probs=200.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|+++|++|+|++..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.||||||
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 58899999999999999999999999999999999999999999999999999999999999986 46999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+||+||+.|+...++.++++.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 9999999999999999877777777788889999999999976 789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+||+..+..+++.|++++++ |.|+|+||||++++.. ||||++|++|+++..|+++++...
T Consensus 163 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999754 9999999999999976 999999999999999999988654
No 6
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6.6e-60 Score=421.63 Aligned_cols=209 Identities=29% Similarity=0.403 Sum_probs=188.0
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----------
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------- 84 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------- 84 (291)
||+++|++++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 5789999999963 57999999999999999999999999999999999999999999999998761
Q ss_pred ---eEEEEcCCCCCCCCCCHHHHHHHhcccc---CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHH
Q psy6612 85 ---DIGYMPQELALHGELSIRETFRYYGYMF---DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 85 ---~ig~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral 156 (291)
.+||+||++.+++.+||+||+.++.... ..+..+..+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 4999999999999999999998864332 3445666778889999999975 3899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+++|++|||||||+|||+.++..++++|++++++ |+|||+||||++.+..||++++|++|+++..++.+++
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999999999999999999999754 9999999999997656999999999999998887664
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.5e-60 Score=431.03 Aligned_cols=214 Identities=29% Similarity=0.386 Sum_probs=195.6
Q ss_pred cceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------C
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~ 84 (291)
+.+|+++|++++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++ +
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 347999999999975 5699999999999999999999999999999999999999999999999886 2
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 85 DIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 85 ~ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
.|||+||++. .+..+||+||+.++...++.+.++.++++.++++.+++.. .++++.+|||||||||+|||||+++|++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l 164 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 164 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 5999999973 3446899999998766666677777888999999999976 6899999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||||+|||+.++..++++|++++ ++|+|||+||||++++.. |||+++|++|+++.+|+++++...
T Consensus 165 LlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 165 LILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999997 569999999999999976 999999999999999999987654
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-59 Score=424.85 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-------------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS------------- 84 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~------------- 84 (291)
.||+++|++++|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 4799999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ---------eEEEEcCCCCCCCCCCHHHHHHHhc-cccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHH
Q psy6612 85 ---------DIGYMPQELALHGELSIRETFRYYG-YMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 85 ---------~ig~v~q~~~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~i 152 (291)
.+||+||++.+++.+||+||+.++. ..++.+..+.++++.++++.+++.. .++++++|||||||||+|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 3999999999999999999998853 3344455555678889999999965 589999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+++|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 165 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999998779999999999999976 99999999999999999887654
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.8e-59 Score=421.89 Aligned_cols=212 Identities=28% Similarity=0.460 Sum_probs=195.1
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYM 89 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v 89 (291)
.+|+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+||+
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v 93 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL 93 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE
Confidence 368999999999999999999999999999999999999999999999999999999999999876 359999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
||++.+++.+||+||+.++...++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+++|++||||||
T Consensus 94 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 173 (256)
T 1vpl_A 94 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP 173 (256)
T ss_dssp CTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999999999999998655445555555667889999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++.+
T Consensus 174 ts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 174 TSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999998779999999999999976 99999999999999998877654
No 10
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.3e-59 Score=422.21 Aligned_cols=218 Identities=21% Similarity=0.302 Sum_probs=196.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------eEEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------DIGY 88 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~ig~ 88 (291)
.+|+++|+++.|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. .++|
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999872 4999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc------CCC
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH------NPK 161 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~------~p~ 161 (291)
++|++.+++.+||+||+.++...+. ..+.++++.++++.+++.. .++++++|||||||||+|||||++ +|+
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~ 167 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYG--GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPR 167 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSC--STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCE
T ss_pred EecCCccCCCCCHHHHHHhhhhhcC--cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 9999999888999999998654332 2344567889999999976 689999999999999999999999 999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
+|||||||+|||+.++..++++|++++++ |+|||++|||++++.. |||+++|++|+++.+|+++++... ..+.+.|
T Consensus 168 lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~--~~l~~~~ 245 (266)
T 4g1u_C 168 WLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA--ETLTQWY 245 (266)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH--HHHHHHC
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc--HHHHHHh
Confidence 99999999999999999999999999754 6799999999999976 999999999999999999887653 3455555
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.9e-59 Score=438.84 Aligned_cols=212 Identities=29% Similarity=0.434 Sum_probs=196.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|+++|++|+|+++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +++|||||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 58899999999999999999999999999999999999999999999999999999999999886 46999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+||+||+.|+...++.+..+.++++.++++.++++. .++++++|||||||||+|||||+.+|++|||||||+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s 162 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLS 162 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 9999999999999998765555444555678899999999976 789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+..+..+++.|+++++ .|.|+|++|||++++.. ||++++|++|+++..|+++++.+.
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 163 NLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999975 48999999999999966 999999999999999999988654
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1e-58 Score=415.01 Aligned_cols=211 Identities=28% Similarity=0.448 Sum_probs=190.9
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+|
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 478999999999999999999999999999999999999999999999999999999999999876 2399
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcC-CCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE-LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|+||++.+++.+|++||+.++.. ......+.+++++++++.++ +.. .++++.+|||||||||+|||||+++|++|||
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999988532 12233445567888999995 854 6899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..++++++.+
T Consensus 164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 99999999999999999999998778999999999999865 99999999999999998877654
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4e-59 Score=421.66 Aligned_cols=209 Identities=24% Similarity=0.401 Sum_probs=191.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+|
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 368899999999999999999999999999999999999999999999999999999999999876 1499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccc--cC-----------CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYM--FD-----------MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iA 153 (291)
|+||++.+++.+||+||+.++... .+ ....+.++++.++++.++++. .++++.+|||||||||+||
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA 165 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG 165 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence 999999999999999999886432 12 233445667889999999976 6899999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
|||+++|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..+++++
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 166 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999998779999999999999975 99999999999999998877
No 14
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.5e-59 Score=438.93 Aligned_cols=214 Identities=25% Similarity=0.436 Sum_probs=198.9
Q ss_pred cceEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEE
Q psy6612 17 KHSVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGY 88 (291)
Q Consensus 17 ~~~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~ 88 (291)
+.+|+++|++++| +++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +++||
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence 4579999999999 888899999999999999999999999999999999999999999999999886 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
|||++.+|+.+||+||+.|+...++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 171 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE 171 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999999999998766556666666788999999999976 789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+|||+..+..+++.|++++++ |.|+|+||||++++.. ||++++|++|+++..|+++++.+.
T Consensus 172 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 172 PFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp TTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999754 8999999999999976 999999999999999999887653
No 15
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.2e-59 Score=438.32 Aligned_cols=212 Identities=28% Similarity=0.465 Sum_probs=197.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|+++|++++|+++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +++|||||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 58899999999988999999999999999999999999999999999999999999999999886 46999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.. .++++++|||||||||+|||||+.+|++|||||||+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999999999998766556666666788999999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+..+..+++.|+++++ .|.|+|++|||++++.. ||++++|++|+++..|+++++...
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999975 48999999999999966 999999999999999999888654
No 16
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.2e-58 Score=438.69 Aligned_cols=212 Identities=27% Similarity=0.426 Sum_probs=190.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +++|||||
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 59999999999999999999999999999999999999999999999999999999999999886 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+||+||+.|+...++.+.++.++++.++++.+++.. .++++++|||||||||+|||||+.+|++|||||||+
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 170 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170 (372)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 9999999999999998766556666666778999999999976 789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+||+..+..+++.|++++++ |.|+|++|||++++.. ||++++|++|+++..|+++++...
T Consensus 171 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 171 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999754 8999999999999966 999999999999999999888654
No 17
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2e-58 Score=437.30 Aligned_cols=212 Identities=26% Similarity=0.427 Sum_probs=197.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------Ce
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ 85 (291)
+|+++|++++|+++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ ++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 58999999999999999999999999999999999999999999999999999999999999764 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
+|||||++.+|+.+||+||+.|+...++.+..+.++++.++++.+++.. .++++++|||||||||+|||||+.+|++||
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 162 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL 162 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999999766666666666788999999999976 789999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||++||+..+..+++.|+++++ .|.|+|+||||++++.. ||++++|++|+++..|+++++...
T Consensus 163 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred ECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999975 48999999999999976 999999999999999999888654
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-58 Score=436.14 Aligned_cols=212 Identities=27% Similarity=0.444 Sum_probs=196.6
Q ss_pred eEEEEeEEEEECCEe--eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------C
Q psy6612 19 SVAVTSAYKKIGNHV--VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------S 84 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~--~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~ 84 (291)
||+++|++++|++++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 689999999998887 99999999999999999999999999999999999999999999999764 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
++|||||++.+|+.+||+||+.|+...++.+.++.++++.++++.++++. .++++++|||||||||+|||||+.+|++|
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lL 162 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL 162 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 59999999999999999999998766555666666788999999999976 68999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||||+|||+..+..+++.|+++++ .|+|+|++|||++++.. ||++++|++|+++..|+++++...
T Consensus 163 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999974 48999999999999976 999999999999999999887653
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.5e-58 Score=431.31 Aligned_cols=207 Identities=29% Similarity=0.441 Sum_probs=191.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
||+++|++++|+++ +|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +++|||||
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 57899999999988 99999999999999999999999999999999999999999999999886 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+||+||+.|+...++.+.. +++.++++.++++. .++++++|||||||||+|||||+.+|++|||||||+
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 99999999999999987654443332 67889999999976 789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+||+..+..+++.|+++++ .|+|+|++|||++++.. ||++++|++|+++..|+++++.+
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999974 58999999999999966 99999999999999999988764
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=9.4e-58 Score=409.12 Aligned_cols=206 Identities=26% Similarity=0.413 Sum_probs=186.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
||+++|++++|++ +|+|+||++++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+||+||
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 5789999999986 49999999999 99999999999999999999999999999999999876 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|++||+.++...++. ...++++.++++.+++.. .++++++|||||||||+|||||+++|++|||||||+
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts 155 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTS
T ss_pred CCccCCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99999999999999886543321 222567889999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.++..+++.|+++++ .|+|||++|||++++.. ||++++|++|+++..++++++.+
T Consensus 156 ~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 156 AVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999975 48999999999999866 99999999999999999877643
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3e-57 Score=411.41 Aligned_cols=210 Identities=22% Similarity=0.312 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEC--C---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEE
Q psy6612 19 SVAVTSAYKKIG--N---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~--~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig 87 (291)
||+++|++++|+ + +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 688999999997 5 7899999999999999999999999999999999999999999999999875 3599
Q ss_pred EEcCCC-CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC--C-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 88 YMPQEL-ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP--P-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 88 ~v~q~~-~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
|+||++ .+++.+|++||+.++...+ .+..+.++++.++++.+++. . .++++.+|||||||||+|||||+++|++|
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999996 4566789999999864332 22223346788899999998 7 68999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999997669999999999999976 99999999999999998877654
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.5e-57 Score=414.73 Aligned_cols=212 Identities=27% Similarity=0.428 Sum_probs=187.3
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-----------eE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-----------DI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~-----------~i 86 (291)
.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .+
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 4799999999999999999999999999999999999999999999999999999999999997653 49
Q ss_pred EEEcCCCCCC--CCCCHHHHHHHhccc----cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 87 GYMPQELALH--GELSIRETFRYYGYM----FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 87 g~v~q~~~l~--~~ltv~enl~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
||+||++.++ +.+||+||+.+.... ++...++..+++.++++.+++.. .++++.+|||||||||+|||||+.+
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~ 179 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ 179 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCC
Confidence 9999997643 356999999875321 12223344567889999999976 6899999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEE--EEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI--IITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~ti--i~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++|||||||+|||+.++..++++|++++++|+|| |++|||++++.. ||++++|++|+++..++++++.+
T Consensus 180 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 180 PQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999997558999 999999999865 99999999999999999887654
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.9e-56 Score=401.50 Aligned_cols=208 Identities=25% Similarity=0.358 Sum_probs=186.8
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
+.||+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+. +.+||+||++.+
T Consensus 2 ~~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~----~~i~~v~q~~~~ 77 (253)
T 2nq2_C 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY----QSIGFVPQFFSS 77 (253)
T ss_dssp CEEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC----SCEEEECSCCCC
T ss_pred CceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe----ccEEEEcCCCcc
Confidence 34799999999998 8899999999999999999999999999999999999999999999842 569999999999
Q ss_pred CCCCCHHHHHHHhcccc-C---CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 96 HGELSIRETFRYYGYMF-D---MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~-~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+||+||+.++...+ + ......++++.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+
T Consensus 78 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 78 PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 98999999998864321 1 123344567889999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.++..+++.|++++++ |+|||++|||++++.. ||++++|++|+ +..++++++..
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999866 8999999999999965 99999999999 88998877643
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.1e-56 Score=401.21 Aligned_cols=207 Identities=23% Similarity=0.328 Sum_probs=181.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEECCEecC----------eE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR--NTLDAGTIKLSFRQIS----------DI 86 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~----------~i 86 (291)
||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++. .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 68999999999999999999999999999999999999999999999999 7899999999998762 38
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccc-cC--CChHHHHHHHHHHHHHcCCC-C-CCCCcCc-CChhHHHHHHHHHHHhcCC
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYM-FD--MTDDQIETRSKEILKLLELP-P-AKKIVGA-LSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~-~~--~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~-LSgGqkQrv~iAral~~~p 160 (291)
+|+||++.+++.+|++||+.+.... .+ ....+..+++.++++.++++ . .++++++ |||||||||+|||||+++|
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999875321 12 22334456788899999994 5 6889999 9999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEEeCCEEEEEechh
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i~~~~~~~ 225 (291)
++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++
T Consensus 163 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 163 TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999997678999999999999975 4999999999999999876
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.7e-55 Score=400.22 Aligned_cols=211 Identities=21% Similarity=0.313 Sum_probs=186.6
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEECCEecC----------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR--NTLDAGTIKLSFRQIS---------- 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~---------- 84 (291)
..||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++.
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 3478999999999999999999999999999999999999999999999999 4789999999998761
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhcc-c---cC---CChHHHHHHHHHHHHHcCCC-C-CCCCcC-cCChhHHHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGY-M---FD---MTDDQIETRSKEILKLLELP-P-AKKIVG-ALSGGQQRRISFAV 154 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~-~---~~---~~~~~~~~~~~~~l~~~~l~-~-~~~~~~-~LSgGqkQrv~iAr 154 (291)
.++|+||++.+++.+|+.||+.+... . ++ .+.++..+++.++++.+++. . .++++. +|||||||||+|||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr 177 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 177 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 39999999999999999999976431 1 11 23344456788999999995 4 578887 59999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEEeCCEEEEEechhHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i~~~~~~~~~ 227 (291)
||+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++
T Consensus 178 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 178 MAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999997668999999999999864 899999999999999988765
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.1e-55 Score=402.33 Aligned_cols=211 Identities=26% Similarity=0.346 Sum_probs=184.5
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
..+|+++|++++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 457999999999986 7899999999999999999999999999999999999999999999999876 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHH-----HHHHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI-----ETRSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
.|||+||++.+|+ .||+||+.++..... ..... ...+.++++.+ |+.. .++++.+|||||||||+|||||
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL 171 (271)
T 2ixe_A 94 QVAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL 171 (271)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred cEEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence 4999999999887 599999987543221 10111 12345667777 6654 6788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+++|++|||||||+|||+.++..+++.|+++++ +|+|||++|||++++..||++++|++|+++..++++++..
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999964 5899999999999987799999999999999999887754
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.5e-55 Score=394.48 Aligned_cols=203 Identities=21% Similarity=0.305 Sum_probs=183.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
+.||+++|++++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++ +.+|
T Consensus 2 ~~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 2 SIVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp CEEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred CcEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 347899999976 6999999999999999999999999999999999999999 9999999876 2499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC-----
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK----- 161 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~----- 161 (291)
|+||++.+++.+|++||+.++.. .... ++++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~ 151 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA 151 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTT
T ss_pred EECCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCC
Confidence 99999999999999999987532 1211 456788999999976 689999999999999999999999999
Q ss_pred --EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 --LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 --llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 152 ~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 152 GQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999997669999999999999965 99999999999999999887643
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.7e-55 Score=392.51 Aligned_cols=204 Identities=26% Similarity=0.412 Sum_probs=177.9
Q ss_pred ceEEEEeEEEEE--CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKI--GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~--~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
+-++++|++++| +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 357899999999 467899999999999999999999999999999999999999999999999886 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------------CCCCcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------------AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQrv~iAr 154 (291)
||+||++.+|+ .|++||+.++.. .... +++.++++.+++.. .++++.+|||||||||+|||
T Consensus 86 ~~v~Q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAr 158 (247)
T 2ff7_A 86 GVVLQDNVLLN-RSIIDNISLANP--GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158 (247)
T ss_dssp EEECSSCCCTT-SBHHHHHTTTCT--TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHH
T ss_pred EEEeCCCcccc-ccHHHHHhccCC--CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHH
Confidence 99999999887 599999987531 1122 23455566655532 34567899999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+++|++|||||||+|||+.++..+++.|++++ +|+|||++|||++.+..||++++|++|+++..++++++..
T Consensus 159 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 232 (247)
T 2ff7_A 159 ALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232 (247)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHT
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999995 5899999999999886799999999999999999877653
No 29
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-55 Score=386.91 Aligned_cols=197 Identities=21% Similarity=0.336 Sum_probs=174.7
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCC
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQEL 93 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~ 93 (291)
.+|+++|++++|++ ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+||+||++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 37899999999998 999999999999999999999999999999999999999999999999875 5699999999
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
.+++.+|++||+.++...++. ..+ ++++.++++.++++..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp CCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred cCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 999999999999886544332 112 456788999999953388899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
+.++..+++.|++++++|+|||++|||++++.. ||+++++ .|+|
T Consensus 166 ~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 166 EDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999997668999999999999977 7777654 4544
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-55 Score=393.07 Aligned_cols=204 Identities=26% Similarity=0.404 Sum_probs=179.8
Q ss_pred eEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 19 SVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
||+++|++++| +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.+||
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999999 678899999999999999999999999999999999999999999999999875 25999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CC-----------CCcCcCChhHHHHHHHHHHH
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AK-----------KIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~-----------~~~~~LSgGqkQrv~iAral 156 (291)
+||++.+|+ .|++||+.++.. .... .+++.++++.+++.. .+ +++.+|||||||||+|||||
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral 154 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred EcCCCcccc-ccHHHHHhhhcc-CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHH
Confidence 999999887 499999986421 1112 234667788888753 33 45679999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+++|++|||||||+|||+.++..+++.|++++ +|+|||++|||++.+..||++++|++|+++..++++++..
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999997 6899999999999887799999999999999898887754
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.8e-54 Score=399.16 Aligned_cols=206 Identities=24% Similarity=0.389 Sum_probs=178.7
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------eE
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------DI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~i 86 (291)
...|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .|
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 44699999999994 578999999999999999999999999999999999999999999999999872 59
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCC-----------CC-CCCCcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-----------PP-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~-~~~~~~~LSgGqkQrv~iAr 154 (291)
|||||++.+|+ .||+||+.++.... ..++ +.++++.+++ +. ..++..+|||||||||+|||
T Consensus 131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~~--~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiAR 203 (306)
T 3nh6_A 131 GVVPQDTVLFN-DTIADNIRYGRVTA--GNDE----VEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203 (306)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTSTTC--CHHH----HHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred EEEecCCccCc-ccHHHHHHhhcccC--CHHH----HHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHH
Confidence 99999999996 49999998764322 2222 2233333332 22 35667899999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+.+|++|||||||++||+.++..+++.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 204 AL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 204 TILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999864 6899999999999988999999999999999999988653
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8.2e-54 Score=387.67 Aligned_cols=214 Identities=25% Similarity=0.375 Sum_probs=181.6
Q ss_pred ccCCcccccccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 7 KRIDPEIIEVKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
+++.+.......+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|.++
T Consensus 5 ~~~~~~~~~~~~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i 83 (260)
T 2ghi_A 5 FSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNV 83 (260)
T ss_dssp CCCCHHHHHHCCCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEG
T ss_pred ccccccccccCCeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEh
Confidence 3443334444568999999999976 4699999999999999999999999999999999999987 89999999876
Q ss_pred ---------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------------CCCCcCcC
Q psy6612 84 ---------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------------AKKIVGAL 142 (291)
Q Consensus 84 ---------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~L 142 (291)
+.+||+||++.+|+ .|++||+.++.. .... +++.++++.+++.. .++++.+|
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL--DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT--TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC--CCCH----HHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 35999999999886 599999987431 1121 23445566555421 24678899
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEe
Q psy6612 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRL 222 (291)
Q Consensus 143 SgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~ 222 (291)
||||||||+|||||+++|++|||||||+|||+.++..+++.|+++++ |+|||++|||++.+..||++++|++|+++..+
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g 235 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIVEKG 235 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGSTTCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999964 89999999999988679999999999999999
Q ss_pred chhHHHH
Q psy6612 223 VHHDIVE 229 (291)
Q Consensus 223 ~~~~~~~ 229 (291)
+++++..
T Consensus 236 ~~~~l~~ 242 (260)
T 2ghi_A 236 THKDLLK 242 (260)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9887754
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.4e-54 Score=389.62 Aligned_cols=199 Identities=22% Similarity=0.318 Sum_probs=180.4
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEE-
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIG- 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig- 87 (291)
||+++|++++|++ +++|+++||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++ +.+|
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 5789999999987 789999999999 9999999999999999999999999 9999999999875 3699
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|+||++.+ .+|++||+.++...+.. .++++.++++.+++. . .++++++|||||||||+|||||+++|++|||
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEELKGL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHHHTCC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EeCCCCcc--CCcHHHHHHHhhhhcch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999987 78999999886543321 134678899999998 6 6899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hC-eEEEEeCCEEEEEechhHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AH-NIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d-~i~~l~~G~i~~~~~~~~~~ 228 (291)
||||+|||+.++..+++.|+++++ |||++|||++++.. || ++++|++|+++..++++++.
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred ECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999853 99999999999866 99 99999999999999887654
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2e-53 Score=378.19 Aligned_cols=200 Identities=25% Similarity=0.301 Sum_probs=170.2
Q ss_pred cceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCC
Q psy6612 17 KHSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94 (291)
Q Consensus 17 ~~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~ 94 (291)
+.+|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .++|+||++.
T Consensus 4 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----~i~~v~q~~~ 79 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQFSW 79 (229)
T ss_dssp CEEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----CEEEECSSCC
T ss_pred cceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----EEEEEecCCc
Confidence 45799999999994 57899999999999999999999999999999999999999999999998 4999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC------------CCCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP------------PAKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
+++. |++||+.++... ... +..++++.+++. ..++++.+|||||||||+|||||+++|++
T Consensus 80 ~~~~-tv~enl~~~~~~---~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 80 IMPG-TIKENIIFGVSY---DEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp CCSB-CHHHHHHTTSCC---CHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred ccCC-CHHHHhhccCCc---ChH----HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9885 999999875321 111 122233333331 12345689999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHH-HHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRL-KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.++..+++.+ .++. +|+|||++|||++++..||++++|++|+++..++++++.+
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999974 5664 4799999999999987799999999999999999877643
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.5e-53 Score=379.52 Aligned_cols=201 Identities=22% Similarity=0.373 Sum_probs=171.0
Q ss_pred eEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 19 SVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 19 ~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
+|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .+||+||++.+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----SVAYVPQQAWI- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----CEEEECSSCCC-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----EEEEEcCCCcC-
Confidence 689999999997 57899999999999999999999999999999999999999999999998 49999999875
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHH---HHHHcCCC------CCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKE---ILKLLELP------PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~---~l~~~~l~------~~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
+.+|++||+.++... ..+.. +++.+ +++.+++. ..++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~~~tv~enl~~~~~~---~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 153 (237)
T 2cbz_A 78 QNDSLRENILFGCQL---EEPYY-RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153 (237)
T ss_dssp CSEEHHHHHHTTSCC---CTTHH-HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred CCcCHHHHhhCcccc---CHHHH-HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 468999999875432 11111 12222 22333331 1367899999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHH---HhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 168 PTVGLDPILSQIIWDRLK---EMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~---~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+|||+.++..+++.|. ++. +|+|||++|||++.+..||++++|++|+++..++++++..
T Consensus 154 Pts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 154 PLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp TTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 999999999999999995 443 5899999999999886799999999999999999887754
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-53 Score=402.23 Aligned_cols=208 Identities=23% Similarity=0.346 Sum_probs=185.4
Q ss_pred cccccceEEEEeEEEEE--CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------
Q psy6612 13 IIEVKHSVAVTSAYKKI--GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------- 83 (291)
Q Consensus 13 ~~~~~~~l~~~~l~~~~--~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------- 83 (291)
.+.....|+++|++|+| +++++|+|+||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++
T Consensus 13 ~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 13 IWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 44445679999999999 67889999999999999999999999999999999999998 899999999876
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCc-----------CChhHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGA-----------LSGGQQRR 149 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~-----------LSgGqkQr 149 (291)
+.+|||||++.+|+ +||+||+.+... .. ++++.++++.+++.. .++++.+ ||||||||
T Consensus 92 ~rr~ig~v~Q~~~lf~-~tv~enl~~~~~---~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQR 163 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFS-GTFRKNLDPNAA---HS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQL 163 (390)
T ss_dssp HHHTEEEESCCCCCCS-EEHHHHHCTTCC---SC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHH
T ss_pred HhCCEEEEcCCcccCc-cCHHHHhhhccc---cC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHH
Confidence 35999999999997 699999964321 11 346778899999975 6788887 99999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+|||||+.+|++|||||||++||+..+..+++.|+++. .++|+|++|||++.+..||||++|++|+++..|+++++..
T Consensus 164 valARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 164 MCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999999875 4799999999997766699999999999999999998876
Q ss_pred H
Q psy6612 230 S 230 (291)
Q Consensus 230 ~ 230 (291)
.
T Consensus 243 ~ 243 (390)
T 3gd7_A 243 Y 243 (390)
T ss_dssp C
T ss_pred C
Confidence 4
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.5e-50 Score=401.90 Aligned_cols=206 Identities=25% Similarity=0.366 Sum_probs=180.9
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
..+++++|++++|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 457999999999974 6899999999999999999999999999999999999999999999999886 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------------CCCCcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------------AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQrv~iA 153 (291)
+|||||++.+|+. |++||+.++.. ...+ ++++.++++.+++.+ .+++..+||||||||++||
T Consensus 419 i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 419 FALVSQNVHLFND-TIANNIAYAAE-GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred eEEEcCCCccccc-cHHHHHhccCC-CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence 9999999999985 99999987531 1122 234556666666532 2345678999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+++|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 493 RALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999864 899999999999998899999999999999999988764
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.5e-50 Score=401.91 Aligned_cols=206 Identities=23% Similarity=0.355 Sum_probs=180.9
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------e
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------D 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~ 85 (291)
..+++++|++++|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.+++ .
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 457999999999973 78999999999999999999999999999999999999999999999999862 5
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------------CCCCcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------------AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQrv~iA 153 (291)
+||+||++.+|+. |++||+.++.. ...++ +++.++++.+++.+ .+++..+||||||||++||
T Consensus 419 i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 419 VALVSQNVHLFND-TVANNIAYART-EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp EEEECSSCCCCSS-BHHHHHHTTTT-SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred CeEEccCCcCCCC-CHHHHHhccCC-CCCCH----HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 9999999999985 99999987531 12222 34556666665531 2345689999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 493 RALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999874 899999999999987799999999999999999988764
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7.3e-50 Score=399.50 Aligned_cols=207 Identities=26% Similarity=0.387 Sum_probs=178.7
Q ss_pred cce-EEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC--------
Q psy6612 17 KHS-VAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-------- 84 (291)
Q Consensus 17 ~~~-l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~-------- 84 (291)
... ++++|++++|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 338 ~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 338 FQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp CCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHH
Confidence 345 999999999974 47999999999999999999999999999999999999999999999999862
Q ss_pred -eEEEEcCCCCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC--------CC----CCcCcCChhHHHHH
Q psy6612 85 -DIGYMPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP--------AK----KIVGALSGGQQRRI 150 (291)
Q Consensus 85 -~ig~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------~~----~~~~~LSgGqkQrv 150 (291)
++||+||++.+|+. |++||+.++.... +.. ++++.++++.+++.+ .+ ++..+||||||||+
T Consensus 418 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv 492 (595)
T 2yl4_A 418 SKIGTVSQEPILFSC-SIAENIAYGADDPSSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI 492 (595)
T ss_dssp HSEEEECSSCCCCSS-BHHHHHHTTSSSTTTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHH
T ss_pred hceEEEccCCcccCC-CHHHHHhhcCCCccccC----HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHH
Confidence 59999999999975 9999998754321 112 244666777776521 22 34488999999999
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 151 ~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||+++|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 493 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 493 AIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC---
T ss_pred HHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999999975 799999999999997799999999999999999988754
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.1e-50 Score=400.17 Aligned_cols=210 Identities=30% Similarity=0.427 Sum_probs=179.1
Q ss_pred cceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+..++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 45799999999994 46899999999999999999999999999999999999999999999999987 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHH-----HHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-----EILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+|||||++.+|+. |++||+.++... ...++..+.++ +.++.+ |++. .+++..+||||||||++|||||+
T Consensus 419 i~~v~Q~~~lf~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 419 ISAVPQETVLFSG-TIKENLKWGRED--ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEEECSSCCCCSE-EHHHHHTTTCSS--CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEECCCCcCcCc-cHHHHHhccCCC--CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999976 999999875321 22222222211 112222 3322 35778899999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+..||+|++|++|+++++|+++++.+.
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999985 58999999999999988999999999999999999988754
No 41
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1e-49 Score=366.28 Aligned_cols=197 Identities=25% Similarity=0.312 Sum_probs=155.4
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
..+|+++|+++. .+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++||+||++.+|
T Consensus 38 ~~~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~l~ 111 (290)
T 2bbs_A 38 DDSLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQNSWIM 111 (290)
T ss_dssp --------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----CEEEECSSCCCC
T ss_pred CceEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----EEEEEeCCCccC
Confidence 457889999985 36799999999999999999999999999999999999999999999998 499999999998
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------------CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------------AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
+. |++||+. ... .... ...++++.+++.. .++++.+||||||||++|||||+++|++||
T Consensus 112 ~~-tv~enl~-~~~---~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll 182 (290)
T 2bbs_A 112 PG-TIKENII-GVS---YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL 182 (290)
T ss_dssp SS-BHHHHHH-TTC---CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred cc-cHHHHhh-Ccc---cchH----HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEE
Confidence 85 9999997 321 1111 1223334444321 234568999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHH-HHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRL-KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+|||+.++..+++.+ +++. +|+|||++|||++.+..||++++|++|+++..|+++++..
T Consensus 183 LDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 183 LDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 99999999999999999974 5554 4899999999999987799999999999999999888754
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.7e-49 Score=395.65 Aligned_cols=206 Identities=26% Similarity=0.389 Sum_probs=178.3
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------e
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------D 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~ 85 (291)
...++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+++ +
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 446999999999964 57999999999999999999999999999999999999999999999999873 5
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-----------C-CCCCcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-----------P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~-~~~~~~~LSgGqkQrv~iA 153 (291)
+||+||++.+|+. |++||+.++.. ....+ ++.++++..++. . ..++..+||||||||++||
T Consensus 417 i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lA 489 (578)
T 4a82_A 417 IGLVQQDNILFSD-TVKENILLGRP--TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489 (578)
T ss_dssp EEEECSSCCCCSS-BHHHHHGGGCS--SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred eEEEeCCCccCcc-cHHHHHhcCCC--CCCHH----HHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHH
Confidence 9999999999987 99999987532 12222 334444444432 1 2345568999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+++|++||||||||+||+.++..+.+.++++. +++|+|++||+++.+..||++++|++|+++++|+++++.+.
T Consensus 490 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999986 47899999999999978999999999999999999987653
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-49 Score=397.50 Aligned_cols=206 Identities=27% Similarity=0.415 Sum_probs=178.4
Q ss_pred cceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------eE
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------DI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~i 86 (291)
...|+++|++++|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.+++ ++
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 446999999999964 67999999999999999999999999999999999999999999999999873 59
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-C-----------CCCcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-A-----------KKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-----------~~~~~~LSgGqkQrv~iAr 154 (291)
||+||++.+|+. |++||+.++.. ..+++ .+.++++.+++.+ . .+...+||||||||++|||
T Consensus 432 ~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 432 GIVLQDTILFST-TVKENLKYGNP--GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504 (598)
T ss_dssp EEECTTCCCCSS-BHHHHHHSSST--TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred EEEeCCCccccc-cHHHHHhcCCC--CCCHH----HHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 999999999975 99999987532 12222 2344455544422 1 2233689999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+++|++||||||||+||+.++..+.+.|+++. +|+|+|++||+++.+..||+|++|++|+++++|+++++.+.
T Consensus 505 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999986 58999999999999988999999999999999999987653
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-46 Score=404.61 Aligned_cols=212 Identities=28% Similarity=0.401 Sum_probs=183.6
Q ss_pred cccccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------
Q psy6612 13 IIEVKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83 (291)
Q Consensus 13 ~~~~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------ 83 (291)
.......|+++|++++|.+ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++
T Consensus 1070 ~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A 1070 KKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp CCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHH
T ss_pred CCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHH
Confidence 3444557999999999953 4699999999999999999999999999999999999999999999999997
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCcC----cCChhHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIVG----ALSGGQQR 148 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~~----~LSgGqkQ 148 (291)
++|+||||+|.+|+. |++||+.|+......++ +.+.++++..++. . .+..++ +|||||||
T Consensus 1150 ~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQ 1224 (1321)
T 4f4c_A 1150 HTRSQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQ 1224 (1321)
T ss_dssp HHHTTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHH
T ss_pred HHHhheEEECCCCEeeCc-cHHHHHhccCCCCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHH
Confidence 469999999999997 99999987532222333 3455556665552 2 355554 69999999
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHH
Q psy6612 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 149 rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|++|||||+++|++||||||||+||+++.+.+.+.|+++. +|+|+|+|+|+++.+..||+|++|++|+|++.|+++++.
T Consensus 1225 riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1225 RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999875 479999999999999999999999999999999999987
Q ss_pred HH
Q psy6612 229 ES 230 (291)
Q Consensus 229 ~~ 230 (291)
+.
T Consensus 1304 ~~ 1305 (1321)
T 4f4c_A 1304 SE 1305 (1321)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8.8e-46 Score=370.42 Aligned_cols=205 Identities=21% Similarity=0.300 Sum_probs=180.2
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
+.+++++++++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. ..+||+||++.++
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~----~~i~~v~Q~~~~~ 429 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----LTVAYKPQYIKAE 429 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC----CCEEEECSSCCCC
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe----eEEEEEecCccCC
Confidence 3479999999999874 6899999999999999999999999999999999999999999873 4699999999888
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
+.+||.|++...... . ....+++.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+.
T Consensus 430 ~~~tv~e~~~~~~~~-~---~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~ 505 (607)
T 3bk7_A 430 YEGTVYELLSKIDSS-K---LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 505 (607)
T ss_dssp CSSBHHHHHHHHHHH-H---HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred CCCcHHHHHHhhhcc-C---CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHH
Confidence 889999988653110 0 011346778899999976 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC--CEEEEEechhHHHHH
Q psy6612 176 LSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD--DQYIGRLVHHDIVES 230 (291)
Q Consensus 176 ~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~--G~i~~~~~~~~~~~~ 230 (291)
++..++++|++++ +.|+|||+||||++++.. |||+++|++ |++...|+++++...
T Consensus 506 ~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 506 QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 9999999999997 568999999999999976 999999986 788888998887653
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.2e-45 Score=363.05 Aligned_cols=206 Identities=24% Similarity=0.285 Sum_probs=177.2
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
+.+++++++++.|++. .|+.+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++. .++|+||+....
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---~i~~~~q~~~~~ 342 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ---ILSYKPQRIFPN 342 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC---CEEEECSSCCCC
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe---eeEeechhcccc
Confidence 4578999999999874 588889999999999999999999999999999999999999998764 589999998777
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
..+||.+|+.+....+ ... ....+.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+.
T Consensus 343 ~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 343 YDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp CSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred cCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 7889999998642211 111 1235678899999965 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC--CEEEEEechhHHHH
Q psy6612 176 LSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD--DQYIGRLVHHDIVE 229 (291)
Q Consensus 176 ~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~--G~i~~~~~~~~~~~ 229 (291)
++..++++|++++ +.|+|||+||||++++.. ||||++|++ |.....+++..+..
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 9999999999997 468999999999999976 999999986 45555566655443
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=6.7e-46 Score=366.93 Aligned_cols=205 Identities=22% Similarity=0.333 Sum_probs=179.4
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
+.+++++++++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. ..+||+||++..+
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~----~~i~~v~Q~~~~~ 359 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD----LTVAYKPQYIKAD 359 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC----CCEEEECSSCCCC
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC----ceEEEEecCCcCC
Confidence 3579999999999875 6999999999999999999999999999999999999999999872 4699999999887
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
+.+||.+++...... ... ..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 360 ~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~ 435 (538)
T 1yqt_A 360 YEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435 (538)
T ss_dssp CSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred CCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 889999988643110 001 1345778899999965 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC--CEEEEEechhHHHHH
Q psy6612 176 LSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD--DQYIGRLVHHDIVES 230 (291)
Q Consensus 176 ~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~--G~i~~~~~~~~~~~~ 230 (291)
++..++++|++++ +.|.|||+||||++++.. |||+++|++ |+++..|+++++...
T Consensus 436 ~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 436 QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 9999999999997 458999999999999976 999999986 788888998887653
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8e-45 Score=389.56 Aligned_cols=210 Identities=29% Similarity=0.420 Sum_probs=178.9
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------- 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--------- 84 (291)
+..|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+++
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 446999999999964 47999999999999999999999999999999999999999999999999873
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHH-----HHHHHcC--CCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-----EILKLLE--LPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~~--l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
.||||||++.+|+. |++||+.++.. ....++..+.++ +.++.+. ++. ......+||||||||++|||||
T Consensus 465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 465 IIGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp HEEEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH
T ss_pred heEEEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHH
Confidence 49999999999987 99999998643 223333333222 2233332 211 3456678999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+.+|++||||||||+||+.+.+.+.+.++++. +|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998875 58999999999999988999999999999999999987653
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8e-45 Score=390.43 Aligned_cols=207 Identities=28% Similarity=0.428 Sum_probs=179.8
Q ss_pred cccceEEEEeEEEEEC---CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-------
Q psy6612 15 EVKHSVAVTSAYKKIG---NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS------- 84 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~---~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~------- 84 (291)
..+..++++|++++|. ++++|+|+||+|++|+.+||+||+|||||||+++|+|+++|++|+|.++|.+++
T Consensus 411 ~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 411 KIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred CCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHH
Confidence 3455699999999995 468999999999999999999999999999999999999999999999999873
Q ss_pred --eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCC-------CC-CCCCc----CcCChhHHHHH
Q psy6612 85 --DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-------PP-AKKIV----GALSGGQQRRI 150 (291)
Q Consensus 85 --~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-~~~~~----~~LSgGqkQrv 150 (291)
+||||+|+|.+|.. |++|||.|+.. ..+.+ ++.++++..++ ++ .+..+ ..||||||||+
T Consensus 491 r~~i~~v~Q~~~Lf~~-TI~eNI~~g~~--~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi 563 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNC-TIEENISLGKE--GITRE----EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI 563 (1321)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHHTTCT--TCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH
T ss_pred hhcccccCCcceeeCC-chhHHHhhhcc--cchHH----HHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH
Confidence 59999999999987 99999987632 12333 34444544443 22 23444 46999999999
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 151 ~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+||||++.+|++||||||||+||+++.+.+.+.|.++. +|+|+|++||+++.+..||+|++|++|+|+++|+++++.+
T Consensus 564 aiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 564 AIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 99999999999999999999999999999999999986 5899999999999999999999999999999999998754
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.1e-45 Score=391.81 Aligned_cols=208 Identities=26% Similarity=0.402 Sum_probs=176.8
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
+..++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ +
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 456999999999965 3699999999999999999999999999999999999999999999999886 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCC-------CC-CC----CCcCcCChhHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-------PP-AK----KIVGALSGGQQRRISF 152 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-~~----~~~~~LSgGqkQrv~i 152 (291)
++|||||++.+|+ .|++||+.++......+.++..+ .++..++ .. .+ ....+||||||||++|
T Consensus 1108 ~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~----~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~i 1182 (1284)
T 3g5u_A 1108 QLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVR----AAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182 (1284)
T ss_dssp SCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHH----HHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHH
T ss_pred ceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHH----HHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHH
Confidence 5999999998886 59999998754322233333332 3333332 11 22 3446899999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+++|++|||||||+|||+.+++.+.+.|+++. +|+|+|++|||++.+..||||++|++|++++.|+++++.+.
T Consensus 1183 ARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp HHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999998864 58999999999999977999999999999999999988653
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-43 Score=350.15 Aligned_cols=201 Identities=21% Similarity=0.259 Sum_probs=171.7
Q ss_pred EeEEEEECC-EeeEeeeeEEEeCC-----cEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 23 TSAYKKIGN-HVVLKGLNLNVPEN-----KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 23 ~~l~~~~~~-~~~L~~vsl~i~~G-----ei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
.+++++|.+ ..+++++||++.+| |++||+||||||||||+|+|+|+++|++|+. +. -..++|+||+....
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~~---~~~i~~~~q~~~~~ 425 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IP---KLNVSMKPQKIAPK 425 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-CC---SCCEEEECSSCCCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-cc---CCcEEEeccccccc
Confidence 445677865 46899999999999 7899999999999999999999999999974 11 14699999998766
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
...|+.+++...... .... ...+.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+.
T Consensus 426 ~~~tv~e~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~ 501 (608)
T 3j16_B 426 FPGTVRQLFFKKIRG-QFLN---PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501 (608)
T ss_dssp CCSBHHHHHHHHCSS-TTTS---HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHH
T ss_pred CCccHHHHHHHHhhc-cccc---HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 667999987542211 1111 235677899999976 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC--CEEEEEechhHHHHHH
Q psy6612 176 LSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD--DQYIGRLVHHDIVESL 231 (291)
Q Consensus 176 ~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~--G~i~~~~~~~~~~~~~ 231 (291)
++..++++|++++ +.|+|||+||||++++.. |||+++|++ |+++..|+++++....
T Consensus 502 ~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 502 QRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence 9999999999986 468999999999999976 999999997 8999999999887753
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.6e-44 Score=353.80 Aligned_cols=184 Identities=22% Similarity=0.321 Sum_probs=159.6
Q ss_pred EeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE---------EECCEec---------
Q psy6612 23 TSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------KLSFRQI--------- 83 (291)
Q Consensus 23 ~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I---------~~~g~~~--------- 83 (291)
+|++|+|+++ .+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence 6899999876 5999999 999999999999999999999999999999999996 4566543
Q ss_pred --CeEEEEcCCCCCCCC---CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 --SDIGYMPQELALHGE---LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~---ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
..+++++|...+++. .|+.+++.... ..+++.++++.+|+.. .++++++|||||||||+|||||+
T Consensus 104 ~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---------~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~ 174 (538)
T 1yqt_A 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---------ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALL 174 (538)
T ss_dssp TSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---------SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhcchhhhccHHHHHhhhh---------HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHh
Confidence 247899997544332 38888875311 1135678999999976 68999999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCC
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDD 216 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G 216 (291)
++|++|||||||++||+.++..++++|++++++|+|||+||||++++.. ||++++|++|
T Consensus 175 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999998779999999999999976 9999999864
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.1e-44 Score=357.66 Aligned_cols=184 Identities=23% Similarity=0.339 Sum_probs=159.7
Q ss_pred EeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE---------EECCEec---------
Q psy6612 23 TSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------KLSFRQI--------- 83 (291)
Q Consensus 23 ~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I---------~~~g~~~--------- 83 (291)
+|++++|++. .+|+++| ++++||++||+||||||||||+|+|+|+++|++|++ .++|.++
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 7899999876 5999999 999999999999999999999999999999999996 4566543
Q ss_pred --CeEEEEcCCCCCCC---CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 --SDIGYMPQELALHG---ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 --~~ig~v~q~~~l~~---~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
..+++++|....++ ..|+.||+... .. .+++.++++.+|+.. .++++++|||||||||+|||||+
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~~-----~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~ 244 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKV----DE-----VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL 244 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHHT----CC-----SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH
T ss_pred hhcceEEeechhhhchhhccccHHHHhhhh----HH-----HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh
Confidence 24789998753322 13899998641 11 134678899999976 68999999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCC
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDD 216 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G 216 (291)
++|++|||||||++||+.++..++++|++++++|+|||+||||++++.. ||++++|+++
T Consensus 245 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999999999999999999998779999999999999976 9999999865
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=6e-43 Score=353.80 Aligned_cols=199 Identities=21% Similarity=0.317 Sum_probs=143.6
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHH---------------------HHHHcCCCCC-------ccEEEECCEe
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL---------------------NCIVGRNTLD-------AGTIKLSFRQ 82 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl---------------------~~i~gl~~p~-------~G~I~~~g~~ 82 (291)
...+|+||||+|++||++||+||||||||||+ ++++|+..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 46799999999999999999999999999998 9999999998 4555666654
Q ss_pred c-----CeEEEEcCCCCC-------------------CCCCCHHHHHHHhccccCC--ChHHHH------HHHHHHHHHc
Q psy6612 83 I-----SDIGYMPQELAL-------------------HGELSIRETFRYYGYMFDM--TDDQIE------TRSKEILKLL 130 (291)
Q Consensus 83 ~-----~~ig~v~q~~~l-------------------~~~ltv~enl~~~~~~~~~--~~~~~~------~~~~~~l~~~ 130 (291)
. ..+|+++|.+.+ ++.+|++||+.++...... ...... ....++++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 3 345666665433 3567999999774322110 000000 0112358889
Q ss_pred CCCC--CCCCcCcCChhHHHHHHHHHHHhcCCC--EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh
Q psy6612 131 ELPP--AKKIVGALSGGQQRRISFAVSLLHNPK--LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206 (291)
Q Consensus 131 ~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~ 206 (291)
|+.+ .++++.+|||||||||+|||||+++|+ +|||||||+|||+.++..++++|++++++|.|||+||||++.+..
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 9964 589999999999999999999999998 999999999999999999999999998789999999999998877
Q ss_pred hCeEEEE------eCCEEEEEechhHHHH
Q psy6612 207 AHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 207 ~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
||++++| ++|++++.|+++++..
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCEEEEecccccccCCEEEEecCHHHHhc
Confidence 9999999 8999999999988764
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7.7e-43 Score=362.09 Aligned_cols=202 Identities=25% Similarity=0.318 Sum_probs=166.8
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCC
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~ 94 (291)
+.+|+++|++++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|. .++||++|++.
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--~~I~yv~Q~~~ 746 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--CRIAYIKQHAF 746 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT--CCEEEECHHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc--cceEeeccchh
Confidence 457999999999975 67999999999999999999999999999999999999999999999874 36999999853
Q ss_pred C----CCCCCHHHHHHHhccc-----------------------------------------------------------
Q psy6612 95 L----HGELSIRETFRYYGYM----------------------------------------------------------- 111 (291)
Q Consensus 95 l----~~~ltv~enl~~~~~~----------------------------------------------------------- 111 (291)
. ....|+.+++.+....
T Consensus 747 ~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 1 2235777776541100
Q ss_pred --------cCC--------C--------------------------hHHHHHHHHHHHHHcCCCC---CCCCcCcCChhH
Q psy6612 112 --------FDM--------T--------------------------DDQIETRSKEILKLLELPP---AKKIVGALSGGQ 146 (291)
Q Consensus 112 --------~~~--------~--------------------------~~~~~~~~~~~l~~~~l~~---~~~~~~~LSgGq 146 (291)
..+ + ....+++++++++.+|+.. .++++++|||||
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 000 0 0001346778999999963 478999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 147 kQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
||||+|||||+++|++|||||||+|||+.++..+.+.|+++ +.|||++|||++++.. ||++++|++|+++..|+
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999988775 5799999999999976 99999999999876653
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.2e-41 Score=353.14 Aligned_cols=193 Identities=22% Similarity=0.307 Sum_probs=167.1
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---CeEEEEcCCC-C
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---SDIGYMPQEL-A 94 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---~~ig~v~q~~-~ 94 (291)
.|...+++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+. .+++|++|++ .
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~~~ 506 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDIDG 506 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCCCC
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEcccccc
Confidence 4666799999999999999999999999999999999999999999995 333 33322 2478999985 6
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
+++.+|+.||+.+ ...+. ++++.++++.+|+. . .++++++||||||||++|||||+.+|++|||||||+||
T Consensus 507 ~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~L 579 (986)
T 2iw3_A 507 THSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHL 579 (986)
T ss_dssp CCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTC
T ss_pred cccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 7888999999975 22221 45788899999995 3 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHHHH
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDIVE 229 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~~ 229 (291)
|+.++..++++|++ .|.|||++|||++++.. ||++++|++|+++ ..|+.+++..
T Consensus 580 D~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 580 DTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999998 58999999999999976 9999999999996 5788876643
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.7e-40 Score=333.38 Aligned_cols=191 Identities=26% Similarity=0.387 Sum_probs=152.0
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH----------------------cCCCCCccEEEECCEecC-----
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV----------------------GRNTLDAGTIKLSFRQIS----- 84 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~----------------------gl~~p~~G~I~~~g~~~~----- 84 (291)
..+|+||||+|++||+++|+||||||||||+++|+ |+..+ .|.|.+++.++.
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 46899999999999999999999999999998764 44333 457777765541
Q ss_pred ---------------------------------------------eEEEEcCCCCCCC----------------------
Q psy6612 85 ---------------------------------------------DIGYMPQELALHG---------------------- 97 (291)
Q Consensus 85 ---------------------------------------------~ig~v~q~~~l~~---------------------- 97 (291)
..|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 0133333332222
Q ss_pred ----------CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCC---E
Q psy6612 98 ----------ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPK---L 162 (291)
Q Consensus 98 ----------~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~---l 162 (291)
.+|+.||+.+.... . ..++..+.+..+++.. .++++.+|||||||||+|||||+++|+ +
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~----~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~l 567 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI----P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTL 567 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC----H--HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh----h--hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcE
Confidence 47899998875321 1 1235567788899863 588999999999999999999999874 9
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.++..++++|++++++|.|||+||||++.+..|||+++| ++|+++++|+++++.+
T Consensus 568 lllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 568 YILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 999999999999999999999999987899999999999988779999999 8999999999988753
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=326.20 Aligned_cols=188 Identities=19% Similarity=0.269 Sum_probs=149.9
Q ss_pred EeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE-----------EECCEec-------
Q psy6612 23 TSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI-----------KLSFRQI------- 83 (291)
Q Consensus 23 ~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I-----------~~~g~~~------- 83 (291)
++++++|+.. ..|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .+.|..+
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 3578999764 4677777 699999999999999999999999999999999998 3344332
Q ss_pred --Ce--EEEEcCCCCC------CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHH
Q psy6612 84 --SD--IGYMPQELAL------HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 --~~--ig~v~q~~~l------~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~i 152 (291)
.. ..+.+|.... .+..++.+++.... . ...+++.++++.+++.. .++++.+|||||||||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM---E----KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC---C----SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh---h----hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 11 1233332211 11124555443211 1 12356788999999976 689999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
||||+++|++|||||||++||+.++..++++|++++++|+|||+||||++++.. ||++++|++|..
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999998779999999999999976 999999988653
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.1e-39 Score=320.26 Aligned_cols=182 Identities=23% Similarity=0.291 Sum_probs=147.2
Q ss_pred eEEEEECCEeeEeeeeEE-EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE-----------EECCEec--------
Q psy6612 24 SAYKKIGNHVVLKGLNLN-VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI-----------KLSFRQI-------- 83 (291)
Q Consensus 24 ~l~~~~~~~~~L~~vsl~-i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I-----------~~~g~~~-------- 83 (291)
+.+.+||.+ .++-..|. .++||++||+||||||||||+|+|+|+++|++|+| .++|+++
T Consensus 4 ~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 456788754 24445554 45999999999999999999999999999999998 5677654
Q ss_pred ---CeEEEEcCCC----CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 ---SDIGYMPQEL----ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ---~~ig~v~q~~----~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAra 155 (291)
..+...+|.. .++. .++.+++.... .+++++++++.+++.. .++++.+|||||||||+||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~~---------~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~a 152 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLK-GTVNEILTKID---------ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAAS 152 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCC-SBHHHHHHHHC---------CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHH
T ss_pred hcccchhhccchhhhhhhhcc-CcHHHHhhcch---------hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 1244444443 2333 37877654211 1124667899999976 689999999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
|+++|++|||||||++||+.++..++++|+++++ |+|||+||||++++.. ||++++|++|.
T Consensus 153 L~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 153 LLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999975 8999999999999976 99999998653
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=4.9e-37 Score=316.93 Aligned_cols=201 Identities=25% Similarity=0.375 Sum_probs=161.1
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH-cCC-------CCCcc-------------EE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-GRN-------TLDAG-------------TI 76 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~-gl~-------~p~~G-------------~I 76 (291)
..|++++++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .|
T Consensus 628 ~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I 702 (972)
T 2r6f_A 628 RWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVI 702 (972)
T ss_dssp CEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEE
T ss_pred eEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEE
Confidence 4688888862 3799999999999999999999999999999864 221 12333 36
Q ss_pred EECCEec----------------------------CeEEEEcCCCCCCC-------------------------------
Q psy6612 77 KLSFRQI----------------------------SDIGYMPQELALHG------------------------------- 97 (291)
Q Consensus 77 ~~~g~~~----------------------------~~ig~v~q~~~l~~------------------------------- 97 (291)
.+++.++ +.+||++|.+.+.+
T Consensus 703 ~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c 782 (972)
T 2r6f_A 703 DIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVC 782 (972)
T ss_dssp EECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTT
T ss_pred EEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccc
Confidence 7776553 12467777543311
Q ss_pred -----------------------CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHH
Q psy6612 98 -----------------------ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 98 -----------------------~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~i 152 (291)
.+|+.|++.|+... . . ..+..++++.++|.. .++++.+|||||||||+|
T Consensus 783 ~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~----~-~-~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~L 856 (972)
T 2r6f_A 783 HGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI----P-K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKL 856 (972)
T ss_dssp TTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC----H-H-HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHH
T ss_pred ccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc----h-h-HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHH
Confidence 35777777664321 1 1 234567899999965 589999999999999999
Q ss_pred HHHHhcCC---CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEec
Q psy6612 153 AVSLLHNP---KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLV 223 (291)
Q Consensus 153 Aral~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~ 223 (291)
|++|+++| ++|||||||+|||+.++..++++|++++++|.|||++|||++++..||++++| ++|++++.|+
T Consensus 857 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~ 936 (972)
T 2r6f_A 857 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936 (972)
T ss_dssp HHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEES
T ss_pred HHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecC
Confidence 99999875 99999999999999999999999999988899999999999998779999999 7899999999
Q ss_pred hhHHHH
Q psy6612 224 HHDIVE 229 (291)
Q Consensus 224 ~~~~~~ 229 (291)
++++..
T Consensus 937 ~~el~~ 942 (972)
T 2r6f_A 937 PEEVAE 942 (972)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988754
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.1e-37 Score=315.88 Aligned_cols=192 Identities=25% Similarity=0.387 Sum_probs=153.8
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHH---------HHHHcCCCCC------cc------EEEECCEec-------
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLL---------NCIVGRNTLD------AG------TIKLSFRQI------- 83 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl---------~~i~gl~~p~------~G------~I~~~g~~~------- 83 (291)
...|+||||+|++|++++|+||||||||||+ +++.+...+. +| .+.++..++
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 4555544332 22 233332221
Q ss_pred -------------------------------------------CeEEEEcCCCCCCC-----------------------
Q psy6612 84 -------------------------------------------SDIGYMPQELALHG----------------------- 97 (291)
Q Consensus 84 -------------------------------------------~~ig~v~q~~~l~~----------------------- 97 (291)
...|+++++..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 11356666655544
Q ss_pred ---------CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC---CEE
Q psy6612 98 ---------ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP---KLL 163 (291)
Q Consensus 98 ---------~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p---~ll 163 (291)
.+|+.|++.|+... ....++.++++.+|+.. .++++.+|||||||||+|||||+++| ++|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL 830 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY 830 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence 36777887765321 12345678899999964 57899999999999999999999876 799
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.+++.+++.|++++++|.|||+||||++.+..||+|++| ++|+++++|+++++.+
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 99999999999999999999999988899999999999999779999999 8999999999998765
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=8e-37 Score=313.97 Aligned_cols=202 Identities=21% Similarity=0.326 Sum_probs=156.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHH-HHcCC-------CC-----------------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNC-IVGRN-------TL----------------- 71 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~-i~gl~-------~p----------------- 71 (291)
+..|+++++++ .+|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 500 AGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp SCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred CceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 45688999975 26999999999999999999999999999996 76543 23
Q ss_pred -Ccc-------EEEECCEecC----------------------------eEEEEcCCC----------------------
Q psy6612 72 -DAG-------TIKLSFRQIS----------------------------DIGYMPQEL---------------------- 93 (291)
Q Consensus 72 -~~G-------~I~~~g~~~~----------------------------~ig~v~q~~---------------------- 93 (291)
.+| .|.++|.++. ..||.++..
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 355 5677765541 012221111
Q ss_pred CCC------------------------CCCCH--------HHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCc
Q psy6612 94 ALH------------------------GELSI--------RETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIV 139 (291)
Q Consensus 94 ~l~------------------------~~ltv--------~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~ 139 (291)
.++ ...++ .+++.|+. . . . ..+++.++++.+++.. .++++
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~---~-~-~-~~~~~~~~L~~~gL~~~~l~~~~ 728 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA---D-E-S-AIFRALDTLREVGLGYLRLGQPA 728 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT---T-S-H-HHHHHHHHHHHTTCTTSBTTCCG
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh---c-c-h-HHHHHHHHHHHcCCCcccccCCc
Confidence 111 12344 44443321 1 1 1 2346788999999975 48999
Q ss_pred CcCChhHHHHHHHHHHHhcC---CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE---
Q psy6612 140 GALSGGQQRRISFAVSLLHN---PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM--- 213 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l--- 213 (291)
.+|||||||||+||++|+++ |++|||||||+|||+..+..++++|++++++|.|||++|||++++..||++++|
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~ 808 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPG 808 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSS
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCC
Confidence 99999999999999999996 799999999999999999999999999988899999999999999669999999
Q ss_pred ---eCCEEEEEechhHHHH
Q psy6612 214 ---RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 214 ---~~G~i~~~~~~~~~~~ 229 (291)
++|++++.|+++++..
T Consensus 809 ~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 809 AGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp SGGGCCSEEEEECHHHHTT
T ss_pred CCCCCCEEEEEcCHHHHHh
Confidence 7999999999887643
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=2.3e-36 Score=312.88 Aligned_cols=201 Identities=24% Similarity=0.364 Sum_probs=157.6
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH-c----CCC---CCccE-------------E
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-G----RNT---LDAGT-------------I 76 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~-g----l~~---p~~G~-------------I 76 (291)
..|++++++. .+|+||||+|++|+++||+|+||||||||+++|+ | .+. +..|. |
T Consensus 646 ~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i 720 (993)
T 2ygr_A 646 RQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLV 720 (993)
T ss_dssp SEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEE
T ss_pred ceEEEecCcc-----ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEE
Confidence 4688888862 3699999999999999999999999999999853 2 222 23454 3
Q ss_pred EECCEec----------------------------CeEEEEcCCCCCC----------------------C---------
Q psy6612 77 KLSFRQI----------------------------SDIGYMPQELALH----------------------G--------- 97 (291)
Q Consensus 77 ~~~g~~~----------------------------~~ig~v~q~~~l~----------------------~--------- 97 (291)
.+++.++ +..||++|.+.+. +
T Consensus 721 ~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c 800 (993)
T 2ygr_A 721 RIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVC 800 (993)
T ss_dssp CCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTT
T ss_pred EecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhc
Confidence 3343332 1245666643321 1
Q ss_pred -----------------------CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHH
Q psy6612 98 -----------------------ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 98 -----------------------~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~i 152 (291)
.+|+.|++.|+... . . ..+..++++.++|.. .++++.+|||||||||+|
T Consensus 801 ~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~----~-~-~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~L 874 (993)
T 2ygr_A 801 QGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI----A-G-VHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKL 874 (993)
T ss_dssp TTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC----H-H-HHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHH
T ss_pred cccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc----h-H-HHHHHHHHHHcCCCcccccCccccCCHHHHHHHHH
Confidence 24666666654321 1 1 234567899999964 588999999999999999
Q ss_pred HHHHhcCC---CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEec
Q psy6612 153 AVSLLHNP---KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLV 223 (291)
Q Consensus 153 Aral~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~ 223 (291)
|++|+.+| ++|||||||+|||+.++..++++|++++++|.|||++|||++++..||++++| ++|++++.|+
T Consensus 875 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~ 954 (993)
T 2ygr_A 875 ASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGT 954 (993)
T ss_dssp HHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEEEEEEC
T ss_pred HHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEEEEecC
Confidence 99999875 99999999999999999999999999988899999999999998679999999 6899999999
Q ss_pred hhHHHH
Q psy6612 224 HHDIVE 229 (291)
Q Consensus 224 ~~~~~~ 229 (291)
++++..
T Consensus 955 ~~el~~ 960 (993)
T 2ygr_A 955 PEDVAA 960 (993)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988765
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-40 Score=321.15 Aligned_cols=207 Identities=12% Similarity=0.057 Sum_probs=163.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc-E-EEECCEecCeEEEEcCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG-T-IKLSFRQISDIGYMPQELA 94 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G-~-I~~~g~~~~~ig~v~q~~~ 94 (291)
+.|++++|+++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|..-+.++|+||+..
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 44667778888885 79999999999999999999999999999999999999 9 9999855467999999984
Q ss_pred ---CCCCCCHHHHHHHhccc-cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHH--HhcCCCE----EE
Q psy6612 95 ---LHGELSIRETFRYYGYM-FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVS--LLHNPKL----LI 164 (291)
Q Consensus 95 ---l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAra--l~~~p~l----ll 164 (291)
+++.+|+.||+ |+... .+... .+++.++++.+|+..... +.+|||||||||+|||| |+.+|++ ||
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~---~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLl 264 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATL---LHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCI 264 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCS---SCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEE
T ss_pred hcccccccchhhhh-cccccccCcch---HHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEE
Confidence 44567999988 54432 12111 123456778888865322 88999999999999999 9999999 99
Q ss_pred Ecc-cCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHh------HHhh-hCe-----EEEEe-CCEEEEEechhHHHHH
Q psy6612 165 LDE-PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE------EAKG-AHN-----IGLMR-DDQYIGRLVHHDIVES 230 (291)
Q Consensus 165 lDE-PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~------~~~~-~d~-----i~~l~-~G~i~~~~~~~~~~~~ 230 (291)
||| ||++||+. +..+.++++++ +.|+|++||+.+ ++.. ||+ +++|+ +|+++ .++++++...
T Consensus 265 LDEpPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~ 339 (460)
T 2npi_A 265 VDTPSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSL 339 (460)
T ss_dssp EECCCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHH
T ss_pred EeCCcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhh
Confidence 999 99999999 55555555543 789999999987 6655 999 99999 99999 8888766432
Q ss_pred HHHHHHHHH
Q psy6612 231 LVEALEDAL 239 (291)
Q Consensus 231 ~~~~~~~~~ 239 (291)
....+.+.|
T Consensus 340 ~~~~i~~~f 348 (460)
T 2npi_A 340 QRTSIREYF 348 (460)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHh
Confidence 223444444
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=4.7e-35 Score=278.89 Aligned_cols=189 Identities=18% Similarity=0.235 Sum_probs=145.8
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC--------------------------------------CCc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--------------------------------------LDA 73 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~--------------------------------------p~~ 73 (291)
..+++++||++++| +++|+|||||||||||++|+++.. +..
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 46899999999999 999999999999999999987764 447
Q ss_pred cEEEECCEecCe----------EEEEcCCCCCCCCCCHHHHHHHhccccCC-----------------------------
Q psy6612 74 GTIKLSFRQISD----------IGYMPQELALHGELSIRETFRYYGYMFDM----------------------------- 114 (291)
Q Consensus 74 G~I~~~g~~~~~----------ig~v~q~~~l~~~ltv~enl~~~~~~~~~----------------------------- 114 (291)
|+++++|+++.. +++++|+..++.. +..+...|.-+....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 899999998732 8999999876653 444443332111000
Q ss_pred -C------------------------------hHHHHHHHHHHHHHcCCCCC----------------------------
Q psy6612 115 -T------------------------------DDQIETRSKEILKLLELPPA---------------------------- 135 (291)
Q Consensus 115 -~------------------------------~~~~~~~~~~~l~~~~l~~~---------------------------- 135 (291)
. .......+.+.++.+++...
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0 00012234444555554320
Q ss_pred ---CCCcCc-CChhHHHHHHHHHHHhcCC--CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCe
Q psy6612 136 ---KKIVGA-LSGGQQRRISFAVSLLHNP--KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHN 209 (291)
Q Consensus 136 ---~~~~~~-LSgGqkQrv~iAral~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~ 209 (291)
.+++.. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|+++. +|.|||+|||+++.+..||+
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~ 364 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHH 364 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSE
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCe
Confidence 033334 5999999999999999999 9999999999999999999999999997 58999999999988777999
Q ss_pred EEEE----eCCEEEEEec
Q psy6612 210 IGLM----RDDQYIGRLV 223 (291)
Q Consensus 210 i~~l----~~G~i~~~~~ 223 (291)
+++| ++|+++....
T Consensus 365 i~~l~k~~~~G~~~~~~~ 382 (415)
T 4aby_A 365 HYKVEKQVEDGRTVSHVR 382 (415)
T ss_dssp EEEEEEEEETTEEEEEEE
T ss_pred EEEEEEeccCCceEEEEE
Confidence 9999 9999887654
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=100.00 E-value=5.5e-33 Score=262.39 Aligned_cols=85 Identities=22% Similarity=0.230 Sum_probs=79.6
Q ss_pred CCCcCcCChhHHHHHHHHHHHh------cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCe
Q psy6612 136 KKIVGALSGGQQRRISFAVSLL------HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHN 209 (291)
Q Consensus 136 ~~~~~~LSgGqkQrv~iAral~------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~ 209 (291)
++++.+|||||||||+|||||+ .+|++|||||||+|||+.++..+++.|+++++.|.|||+||||++.+..||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4688999999999999999999 7999999999999999999999999999998789999999999998666999
Q ss_pred EEEEeCCEEEE
Q psy6612 210 IGLMRDDQYIG 220 (291)
Q Consensus 210 i~~l~~G~i~~ 220 (291)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999864
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.97 E-value=3.3e-33 Score=236.58 Aligned_cols=151 Identities=16% Similarity=0.117 Sum_probs=107.1
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCC-CCCHHHHHHHhccccCCC
Q psy6612 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHG-ELSIRETFRYYGYMFDMT 115 (291)
Q Consensus 37 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~-~ltv~enl~~~~~~~~~~ 115 (291)
|+||++++||+++|+||||||||||+|++.+ |...+++..+ .|+++|++.-.. .-++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~d~~--~g~~~~~~~~~~~~~~~~~~~---------- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISSDFC--RGLMSDDENDQTVTGAAFDVL---------- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEHHHH--HHHHCSSTTCGGGHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEccHHH--HHHhcCcccchhhHHHHHHHH----------
Confidence 6899999999999999999999999998653 2222222111 256666643110 00111111
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH----------------HHHH
Q psy6612 116 DDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI----------------LSQI 179 (291)
Q Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~----------------~~~~ 179 (291)
...... ....+...........|+|||||++||||++.+|++|+|||||++||+. .+..
T Consensus 63 ----~~~~~~-~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~ 137 (171)
T 4gp7_A 63 ----HYIVSK-RLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQ 137 (171)
T ss_dssp ----HHHHHH-HHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHH
T ss_pred ----HHHHHH-HHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 111212 2233443321234556999999999999999999999999999999999 6699
Q ss_pred HHHHHHHhHhCCcEEEEEccCHhHHhhhCeE
Q psy6612 180 IWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210 (291)
Q Consensus 180 i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i 210 (291)
+++.|++++++|.|+|++|||++++..++++
T Consensus 138 l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 138 MKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred hhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 9999999876699999999999999876554
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.97 E-value=1e-35 Score=260.75 Aligned_cols=145 Identities=21% Similarity=0.293 Sum_probs=104.4
Q ss_pred EEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC--Ee---c-CeEEEEcCCCCCCCCCC
Q psy6612 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF--RQ---I-SDIGYMPQELALHGELS 100 (291)
Q Consensus 27 ~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g--~~---~-~~ig~v~q~~~l~~~lt 100 (291)
|+|+++.+|+++ ++||+++|+||||||||||+|+|+|+ +|++|+|.... .+ . +.+||+||++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 346677899996 89999999999999999999999999 99999995310 11 1 4599999986
Q ss_pred HHHHH-HHhc----cccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 101 IRETF-RYYG----YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 101 v~enl-~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
.||+ .+.. ....... .+++.++++. ++ ||||||+|||||+.+|++|||||||+|
T Consensus 76 -~enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl------------Gq~qrv~lAraL~~~p~lllLDEPts~---- 134 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI------------VEVAPLAYMRGRTLNDAFVILDEAQNT---- 134 (208)
T ss_dssp -----CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS------------EEEEEGGGGTTCCBCSEEEEECSGGGC----
T ss_pred -HHHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC------------chHHHHHHHHHHhcCCCEEEEeCCccc----
Confidence 3343 2210 1111001 1245555554 43 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEEccCHhHHhh
Q psy6612 176 LSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206 (291)
Q Consensus 176 ~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~ 206 (291)
++..++++|+++ ++|+||| +|||++++..
T Consensus 135 ~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 135 TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence 899999999998 6689999 9999987754
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=5.9e-31 Score=244.07 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=73.7
Q ss_pred CCCCcCcCChhHHHHHHHHHHHh----cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeE
Q psy6612 135 AKKIVGALSGGQQRRISFAVSLL----HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210 (291)
Q Consensus 135 ~~~~~~~LSgGqkQrv~iAral~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i 210 (291)
.++++.+||+|||||++||+||+ .+|++|||||||++||+..+..+++.|+++. +|.|||++||+++....||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHhhCceE
Confidence 45678999999999999999997 5889999999999999999999999999985 578999999997655669986
Q ss_pred --EEEeCCEE
Q psy6612 211 --GLMRDDQY 218 (291)
Q Consensus 211 --~~l~~G~i 218 (291)
++|.+|.-
T Consensus 292 ~~v~~~~g~s 301 (322)
T 1e69_A 292 HGVTMVNGVS 301 (322)
T ss_dssp EEEEESSSCE
T ss_pred EEEEEeCCEE
Confidence 88888854
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.97 E-value=5.3e-34 Score=273.08 Aligned_cols=174 Identities=11% Similarity=0.091 Sum_probs=143.2
Q ss_pred EeeEeeeeEEEeCCc--------------------EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcC
Q psy6612 32 HVVLKGLNLNVPENK--------------------IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ 91 (291)
Q Consensus 32 ~~~L~~vsl~i~~Ge--------------------i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q 91 (291)
+.+|+++||++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+..+.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 999999999999999999999999999999999977644589999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChh--HHHHHHHHHHHhc----------C
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG--QQRRISFAVSLLH----------N 159 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG--qkQrv~iAral~~----------~ 159 (291)
++ .++.+|++||+.+.. . +.++.++++.+++...+..+. ||+| |+||++||+||++ +
T Consensus 116 ~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tk 184 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTK 184 (413)
T ss_dssp CS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEec
Confidence 85 567789988865431 1 124677889998865444444 9999 9999999999999 9
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhH-----hCC----cEEEEEccCHhH--Hhh-hCeEE-EEeCC
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMA-----LNG----KTIIITTHYIEE--AKG-AHNIG-LMRDD 216 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~-----~~g----~tii~~tHd~~~--~~~-~d~i~-~l~~G 216 (291)
|++++|||||+|||+.++.++++.|+++. +.| .+|+++||+++. +.. ||++. .|..|
T Consensus 185 pdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 185 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 99999999999999999999999999984 322 578899999987 765 88774 45444
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.96 E-value=1.7e-33 Score=244.76 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=121.7
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe-----cCeEEEEcCCCCCCCCCCHHHHH
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ-----ISDIGYMPQELALHGELSIRETF 105 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-----~~~ig~v~q~~~l~~~ltv~enl 105 (291)
..++++| .++++||+++|+||||||||||+|+|+|+++...+.+.+.+.+ .+.++|+||++.+|+.+|+.+++
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 3567888 7999999999999999999999999999986333222221211 13589999998888877887776
Q ss_pred HHh----c--cccCCChHHHHHHHHHH------HHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 106 RYY----G--YMFDMTDDQIETRSKEI------LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 106 ~~~----~--~~~~~~~~~~~~~~~~~------l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
... . ..++.+..+.++++.+. ++.+|+.. .++++.+|| ||+.+|++++|||||+++
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l 154 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGR 154 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTT
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhc
Confidence 422 1 23344444555556555 55555543 466778888 999999999999999998
Q ss_pred ----CHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 173 ----DPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 173 ----D~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
|+..+..+++.+++++ +.|.|+|++|||++++.. ||++++|..
T Consensus 155 ~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 155 GTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 7889999999999997 458999999999999976 999999853
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.95 E-value=1.2e-29 Score=216.90 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=99.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe---------cCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ---------ISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---------~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 117 (291)
+++|+||||||||||+|+|+|++. |.++|.+ -+.+||++|++. +.+++ .... ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~--~~~~-~~~~- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI--FSSK-FFTS- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETT------CCEEE--EEET-TCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCc------HHHHH--HHhh-cCCc-
Confidence 689999999999999999999985 3333321 145899999762 22222 1111 1000
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHH-----HhcCCCEEEEcc--cCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 118 QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVS-----LLHNPKLLILDE--PTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAra-----l~~~p~llllDE--PtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
-...++++.+||||||||++|||| ++.+|+++|||| ||++||+..+..+.+.+.+ .
T Consensus 67 --------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~ 129 (178)
T 1ye8_A 67 --------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---P 129 (178)
T ss_dssp --------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---T
T ss_pred --------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---C
Confidence 012567889999999999999996 999999999999 9999999999999888876 4
Q ss_pred CcEEEEEc---cCHhHHhh-hCe
Q psy6612 191 GKTIIITT---HYIEEAKG-AHN 209 (291)
Q Consensus 191 g~tii~~t---Hd~~~~~~-~d~ 209 (291)
+.|+|++| ||.+++.. |++
T Consensus 130 ~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 130 NVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTC
T ss_pred CCeEEEEEccCCCchHHHHHHhc
Confidence 67788888 58888876 887
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.95 E-value=2.2e-33 Score=259.06 Aligned_cols=162 Identities=13% Similarity=0.102 Sum_probs=131.7
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
+|+++++++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|..
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I---------~~~v~q~~~lf~~ 167 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV---------LSFANHKSHFWLA 167 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE---------ECGGGTTSGGGGG
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE---------EEEecCccccccc
Confidence 467788999997 77999999999999999999999999999999999998 8988 4578899888875
Q ss_pred CCHHH-HHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHH
Q psy6612 99 LSIRE-TFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176 (291)
Q Consensus 99 ltv~e-nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~ 176 (291)
|+++ |+.+... .. . .+.+.++.+ +.. .+ ...|||||||| ||||+.+|++|| ||+||+.+
T Consensus 168 -ti~~~ni~~~~~---~~-~----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 168 -SLADTRAALVDD---AT-H----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp -GGTTCSCEEEEE---EC-H----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTT
T ss_pred -cHHHHhhccCcc---cc-H----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH
Confidence 7876 7765321 11 1 344555553 433 33 67899999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHH
Q psy6612 177 SQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 177 ~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+..+.. .||+++.+..||+| +|++|+++..|+++++
T Consensus 229 ~~~i~~--------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 229 EDRYLY--------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp CGGGGG--------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred HHHHHH--------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 988852 29999887779999 9999999999998877
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.95 E-value=7.7e-30 Score=235.24 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=136.1
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------CeEEEEcCCC
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------------SDIGYMPQEL 93 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------------~~ig~v~q~~ 93 (291)
++...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++ ..++|++|++
T Consensus 84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~ 163 (302)
T 3b9q_A 84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 163 (302)
T ss_dssp HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-
T ss_pred hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecC
Confidence 3343345679999999999999999999999999999999999999999998764 1489999999
Q ss_pred C-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC--EEEEcccC
Q psy6612 94 A-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK--LLILDEPT 169 (291)
Q Consensus 94 ~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~--llllDEPt 169 (291)
. +++.+|++||+.+... .+.. ..+++.+|+.+ .++++.+|| |||++||||++.+|+ +|+|| ||
T Consensus 164 ~~~~~~~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 164 DKAKAATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp -CCCHHHHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred CccCHHHHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 8 8888999999986432 1110 12456677755 467889999 999999999999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHHHhH-hCCcEEEEEcc---------CHhHHhh-hCeEEEEeCCEE
Q psy6612 170 VGLDPILSQIIWDRLKEMA-LNGKTIIITTH---------YIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~-~~g~tii~~tH---------d~~~~~~-~d~i~~l~~G~i 218 (291)
+|||+..+ ++++. +.|.|+|++|| .++.+.. ...|.++..|+.
T Consensus 231 sglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 231 TGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99999865 34555 35899999999 4555544 678999999854
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.94 E-value=1.2e-30 Score=251.94 Aligned_cols=183 Identities=15% Similarity=0.111 Sum_probs=148.5
Q ss_pred eEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE---ec-----------
Q psy6612 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR---QI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~---~~----------- 83 (291)
+++++++++.|+ +..+|+++ |++.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+ ++
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~ 209 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPD 209 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHH
T ss_pred ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcccc
Confidence 456678999997 67899999 999999999999999999999999999999999999999997 32
Q ss_pred ---CeEEEEcCC-CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 ---SDIGYMPQE-LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 ---~~ig~v~q~-~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+.++|++|+ ..+++++|+.+|+.+.+.++... .-.....-..+..||+|| ||++|| +.+
T Consensus 210 ~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------------~~~v~~~ld~l~~lS~g~-qrvslA---l~~ 272 (438)
T 2dpy_A 210 GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------------GQHVLLIMDSLTRYAMAQ-REIALA---IGE 272 (438)
T ss_dssp HHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------------TCEEEEEEECHHHHHHHH-HHHHHH---TTC
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------------CCCHHHHHHhHHHHHHHH-HHHHHH---hCC
Confidence 358999995 55677788999887654322100 000001112367899999 999999 889
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHh---C-Cc-----EEEEEccCHhHHhhhCeEEEEeCCEEEEEechhH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMAL---N-GK-----TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 226 (291)
|++ |+|||+..+..+.+++.++.+ + |+ ||+++|||++ ...||++++|.+|+++.++.+.+
T Consensus 273 p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~ 341 (438)
T 2dpy_A 273 PPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAE 341 (438)
T ss_dssp CCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHH
T ss_pred Ccc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHH
Confidence 988 999999999999999999865 3 64 9999999999 44599999999999998776543
No 76
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.94 E-value=3.6e-31 Score=245.13 Aligned_cols=182 Identities=12% Similarity=0.016 Sum_probs=140.1
Q ss_pred cccceEEEEeEEEEECCEeeEeeeeEE-----------------------EeCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 15 EVKHSVAVTSAYKKIGNHVVLKGLNLN-----------------------VPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~~~L~~vsl~-----------------------i~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
.++.+|+++++++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|
T Consensus 39 ~~~~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 39 GLGEQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CTTCCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3456788899999994 677777765 899999999999999999999999999999
Q ss_pred CccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHH
Q psy6612 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRIS 151 (291)
Q Consensus 72 ~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~ 151 (291)
+.|. .+++|++|++.+++. |+.||+.+.. .++.+.....+.+.++++.++-...+.++.+|||||+||++
T Consensus 117 ~~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~ 186 (312)
T 3aez_A 117 WDHH--------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIP 186 (312)
T ss_dssp STTC--------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEE
T ss_pred cCCC--------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhh
Confidence 8664 469999999998888 9999986532 12333333345677788888722245778899999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH-hh-hCeEEEEeCC
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA-KG-AHNIGLMRDD 216 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~-~~-~d~i~~l~~G 216 (291)
+|+|++.+|++||+|||++.+|+.. ..+.+.--..|+++|+.+.. .+ ++|.+.+.++
T Consensus 187 ~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 187 GAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred hHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998621 11222212457788888776 34 7777666664
No 77
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.94 E-value=4.7e-31 Score=231.93 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=100.4
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEEEcCCCCCCCCCCH
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGYMPQELALHGELSI 101 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~v~q~~~l~~~ltv 101 (291)
+..|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++ ..++|+||++.+|+.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 45799999999999999999999999999999999998 6 99999 6543 358899998876654321
Q ss_pred -HHHHH---HhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHH-----HHHHhcCCCEEEEcccCCCC
Q psy6612 102 -RETFR---YYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISF-----AVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 102 -~enl~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~i-----Aral~~~p~llllDEPtsgL 172 (291)
.+++. +....++.+. ..++++++...+...+ .+|||||+||++| ||+|+.+|++++|||||+++
T Consensus 86 ~~~~l~~~~~~~~~~g~~~----~~i~~~l~~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~ 158 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLK----SEYDKAKEQNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTR 158 (218)
T ss_dssp TTCEEEEEEETTEEEEEEH----HHHHHHHHTTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHT
T ss_pred ccchhhhhhcccccCCCcH----HHHHHHHhCCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhc
Confidence 11211 1112222222 2355555543321122 5789999999999 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHh
Q psy6612 173 DPILSQIIWDRLKEMAL 189 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~ 189 (291)
|..+...+.+.+.++.+
T Consensus 159 d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 159 NTENQEQIQKRMEQLNI 175 (218)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999888753
No 78
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.94 E-value=3.4e-28 Score=229.07 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=134.9
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------CeEEEEcCCCC-CCCCC
Q psy6612 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------------SDIGYMPQELA-LHGEL 99 (291)
Q Consensus 36 ~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------------~~ig~v~q~~~-l~~~l 99 (291)
..+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++ ..++|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 568999999999999999999999999999999999999999998764 14899999998 88888
Q ss_pred CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC--EEEEcccCCCCCHHH
Q psy6612 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK--LLILDEPTVGLDPIL 176 (291)
Q Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~--llllDEPtsgLD~~~ 176 (291)
|+++|+.+... .+.. ..+++.+|+.+ .++++.+|| |||++||||++.+|+ +|+|| ||+|||+.+
T Consensus 228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp HHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred hHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 99999986532 1111 12456677755 467888999 999999999999999 99999 999999986
Q ss_pred HHHHHHHHHHhH-hCCcEEEEEcc---------CHhHHhh-hCeEEEEeCCEE
Q psy6612 177 SQIIWDRLKEMA-LNGKTIIITTH---------YIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 177 ~~~i~~~l~~l~-~~g~tii~~tH---------d~~~~~~-~d~i~~l~~G~i 218 (291)
+. +++. +.|.|+|++|| .++.+.. +..|.++..|+.
T Consensus 295 ~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 295 QA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 53 4454 35899999999 3455544 678999988854
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.93 E-value=5.7e-29 Score=225.95 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=98.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
.++|+||||||||||+|+|+|+..|++|+|.++|+++ +.++|++|++.+++.+||.||+.|+....+.. ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~---~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN---CW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT---CS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH---HH
Confidence 4899999999999999999999999999999999865 46999999999999999999998765433211 11
Q ss_pred HHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccC
Q psy6612 121 TRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd 200 (291)
+.+.+++.. ...+..+.+||||||||+++|||++. ++++|||++|||+.. .++++.+.+. .+||++.|.
T Consensus 81 ~~i~~~~~~---~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K 149 (270)
T 3sop_A 81 EPIEKYINE---QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAK 149 (270)
T ss_dssp HHHHHHHHH---HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETT
T ss_pred HHHHHHHHH---HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEec
Confidence 223333331 11356788999999999999999886 999999999999987 4566666655 888888887
Q ss_pred HhHH
Q psy6612 201 IEEA 204 (291)
Q Consensus 201 ~~~~ 204 (291)
.+.+
T Consensus 150 ~D~l 153 (270)
T 3sop_A 150 ADTM 153 (270)
T ss_dssp GGGS
T ss_pred cccC
Confidence 6544
No 80
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.93 E-value=2.7e-27 Score=248.26 Aligned_cols=165 Identities=17% Similarity=0.202 Sum_probs=127.3
Q ss_pred cceEEEEe-----EEEEE-CCEeeEeeeeEEEeC-------CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 17 KHSVAVTS-----AYKKI-GNHVVLKGLNLNVPE-------NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 17 ~~~l~~~~-----l~~~~-~~~~~L~~vsl~i~~-------Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
+.+|++++ +++.| ++..+++|+||++++ |++++|+||||||||||||+| |++.+ .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-----------~ 815 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-----------M 815 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------H
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------H
Confidence 45799999 99999 778899999999987 999999999999999999999 99875 2
Q ss_pred CeEE-EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 SDIG-YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 ~~ig-~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
.++| ||||++. .+|+.|++. . .+|+.+ ..+..+.+|++|++ +++|++++.+|+
T Consensus 816 aqiG~~Vpq~~~---~l~v~d~I~--~-------------------rig~~d~~~~~~stf~~em~~-~a~al~la~~~s 870 (1022)
T 2o8b_B 816 AQMGCYVPAEVC---RLTPIDRVF--T-------------------RLGASDRIMSGESTFFVELSE-TASILMHATAHS 870 (1022)
T ss_dssp HTTTCCEESSEE---EECCCSBEE--E-------------------ECC---------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred hheeEEeccCcC---CCCHHHHHH--H-------------------HcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCc
Confidence 3466 9999863 345555541 1 123222 23445778888886 999999999999
Q ss_pred EEEEcccCCCCCHHHH-HHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEE
Q psy6612 162 LLILDEPTVGLDPILS-QIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYI 219 (291)
Q Consensus 162 llllDEPtsgLD~~~~-~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~ 219 (291)
++||||||+|+|+... ..++++|+.++++ |.++|++||+++++.. ||++.++ +|++.
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 9999999999999884 5678999999866 8999999999999976 8988876 57776
No 81
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.93 E-value=3.8e-25 Score=206.44 Aligned_cols=79 Identities=25% Similarity=0.310 Sum_probs=71.3
Q ss_pred CCCcCcCChhHHH------HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCe
Q psy6612 136 KKIVGALSGGQQR------RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHN 209 (291)
Q Consensus 136 ~~~~~~LSgGqkQ------rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~ 209 (291)
++++.+||||||| |+++|+||+.+|++|||||||+|||+..+..+++.|+++.++|.|||++|||.+....||+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~ 322 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 322 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCE
Confidence 5678999999999 6778888889999999999999999999999999999998778899999999765556999
Q ss_pred EEEEe
Q psy6612 210 IGLMR 214 (291)
Q Consensus 210 i~~l~ 214 (291)
+++|+
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99885
No 82
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=5.6e-26 Score=235.36 Aligned_cols=159 Identities=25% Similarity=0.328 Sum_probs=131.6
Q ss_pred HHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChH---------HHHHHHHHHHHHc
Q psy6612 60 TLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD---------QIETRSKEILKLL 130 (291)
Q Consensus 60 TLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~---------~~~~~~~~~l~~~ 130 (291)
|...|..+.+.|..|+|+++|+++.. +..+++.+++.|.... ..+.. ...++..+.+..+
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~----------~~~~~v~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~L~~v 451 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHE----------FTELSISEELEFLKNL-NLTEREREIVGELLKEIEKRLEFLVDV 451 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHH----------HHHSBHHHHHHHHHSC-CCCTTTTTTHHHHHHHHHHHHHHHHTT
T ss_pred cchhcccccCChHhcCcEECCccHHH----------hhhCCHHHHHHHHHhc-cCcHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 45567778889999999999998743 3346888888764332 11110 1112344678889
Q ss_pred CCCC--CCCCcCcCChhHHHHHHHHHHHhcCCC--EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh
Q psy6612 131 ELPP--AKKIVGALSGGQQRRISFAVSLLHNPK--LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206 (291)
Q Consensus 131 ~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~ 206 (291)
|+.. .++++.+|||||||||+|||||+++|+ +|||||||+|||+..+..++++|++++++|.|||+||||++.+..
T Consensus 452 gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~ 531 (916)
T 3pih_A 452 GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN 531 (916)
T ss_dssp TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT
T ss_pred CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 9964 589999999999999999999999887 999999999999999999999999998789999999999999877
Q ss_pred hCeEEEE------eCCEEEEEechhHHHH
Q psy6612 207 AHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 207 ~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
||++++| ++|+++++|+++++..
T Consensus 532 aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 532 ADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9999999 8999999999998765
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.92 E-value=3.3e-25 Score=208.73 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=77.4
Q ss_pred CCCcC-cCChhHHHHHHHHHHHh---------cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 136 KKIVG-ALSGGQQRRISFAVSLL---------HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 136 ~~~~~-~LSgGqkQrv~iAral~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
++++. .||+|||||++||++|+ .+|++|||||||++||+..+..+++.|.++. .|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 34666 79999999999999999 8999999999999999999999999999874 699999994 44
Q ss_pred hhCeEEEEeCCEEEEEechhHH
Q psy6612 206 GAHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 206 ~~d~i~~l~~G~i~~~~~~~~~ 227 (291)
.||++++|++|+++..++++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999998887654
No 84
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.92 E-value=3.7e-27 Score=219.78 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=105.2
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
+++++||.+++|++++|+||||||||||+++|+|+++|++|.|+++|.+... + +.. .+++. +.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~---------~-~~~--~~~i~----~~- 222 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV---------F-KHH--KNYTQ----LF- 222 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC---------C-SSC--SSEEE----EE-
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc---------c-ccc--hhEEE----EE-
Confidence 7899999999999999999999999999999999999999999998853100 0 000 00000 00
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcE
Q psy6612 114 MTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~t 193 (291)
.. |||+||++|||||.++|++|++||||+ .++++.|+.+...+.|
T Consensus 223 --------------------------~g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~t 267 (330)
T 2pt7_A 223 --------------------------FG--GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKG 267 (330)
T ss_dssp --------------------------CB--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCC
T ss_pred --------------------------eC--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCE
Confidence 00 899999999999999999999999998 2456777777644458
Q ss_pred EEEEccCHhHHhhhCeEEEEeCCE
Q psy6612 194 IIITTHYIEEAKGAHNIGLMRDDQ 217 (291)
Q Consensus 194 ii~~tHd~~~~~~~d~i~~l~~G~ 217 (291)
+|++||+.+....|||+++|.+|.
T Consensus 268 vi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 268 TLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EEEEEcccHHHHHhhhheehhcCC
Confidence 999999999556699999998873
No 85
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.92 E-value=4.4e-25 Score=216.87 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=73.7
Q ss_pred CCcCcC-ChhHHHHHHHHHHHhcCC--CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE
Q psy6612 137 KIVGAL-SGGQQRRISFAVSLLHNP--KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM 213 (291)
Q Consensus 137 ~~~~~L-SgGqkQrv~iAral~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l 213 (291)
+++.+| ||||||||+|||||+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||+|||+++.+..||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAARAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHHSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEE
Confidence 456778 999999999999999999 99999999999999999999999999987 89999999999988779999999
Q ss_pred eCC
Q psy6612 214 RDD 216 (291)
Q Consensus 214 ~~G 216 (291)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 554
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.92 E-value=2.4e-27 Score=222.54 Aligned_cols=182 Identities=15% Similarity=0.123 Sum_probs=135.3
Q ss_pred eEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------------
Q psy6612 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------- 83 (291)
+++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++.
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhh
Confidence 455677899997 77899999 99999999999999999999999999999999999999988652
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+.+.+++|.. .+..+.+..... ...+.+.+...+-.- .-..+.+||+|| ||+++| +.+
T Consensus 124 ~~~~v~~~~~~~-----~~~~~r~~~~~~---------~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~ 185 (347)
T 2obl_A 124 LSKCVLVVTTSD-----RPALERMKAAFT---------ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGE 185 (347)
T ss_dssp HTTEEEEEECTT-----SCHHHHHHHHHH---------HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTC
T ss_pred hhceEEEEECCC-----CCHHHHHHHHHH---------HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCC
Confidence 1244454432 122222211000 000111111111110 114678999999 899999 688
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHh--CCc-----EEEEEccCHhHHhhhCeEEEEeCCEEEEEechhH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMAL--NGK-----TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 226 (291)
|++ |+||||.....+.+++.++.+ .|. ||+++|||++ ...||++++|.+|+++.+++..+
T Consensus 186 p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 186 PDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp CCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred CCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 888 999999999999999999974 577 9999999999 33499999999999998876544
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.92 E-value=1.6e-28 Score=241.77 Aligned_cols=170 Identities=17% Similarity=0.192 Sum_probs=124.5
Q ss_pred EEEEeEEEEECCEeeEeeeeE-EEeCCcEEEEECCCCccHHHHHHH--HHcCCCCCccEEEECCEec--------CeEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNL-NVPENKIYGLLGPSGCGKTTLLNC--IVGRNTLDAGTIKLSFRQI--------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl-~i~~Gei~~liGpNGaGKSTLl~~--i~gl~~p~~G~I~~~g~~~--------~~ig~ 88 (291)
++.+++.+..++.++|+++|| .+++|++++|+||||||||||+++ ++|+.+|++|.|+++|++. +.+||
T Consensus 13 ~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~ 92 (525)
T 1tf7_A 13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGW 92 (525)
T ss_dssp -CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTC
T ss_pred ccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCC
Confidence 334455555667889999999 999999999999999999999999 7899999999999999763 35788
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
++|++...+ |+.+ ..... .. ...++++.+++.. .++.+.+||+| +|+++++||
T Consensus 93 ~~q~~~~~~------~l~~-~~~~~-~~-----~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~lilDe 146 (525)
T 1tf7_A 93 DLAKLVDEG------KLFI-LDASP-DP-----EGQEVVGGFDLSALIERINYAIQKY-------------RARRVSIDS 146 (525)
T ss_dssp CHHHHHHTT------SEEE-EECCC-CS-----SCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEEEEEC
T ss_pred ChHHhhccC------cEEE-EecCc-cc-----chhhhhcccCHHHHHHHHHHHHHHc-------------CCCEEEECC
Confidence 888754211 1111 00000 00 0011122222221 23444555555 588999999
Q ss_pred cCC-----CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH---------hh-hCeEEEEeC
Q psy6612 168 PTV-----GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA---------KG-AHNIGLMRD 215 (291)
Q Consensus 168 Pts-----gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~---------~~-~d~i~~l~~ 215 (291)
||+ +||+..++.++++++++++.|+|||++||+++++ .. ||++++|++
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 998 4699999999999999987799999999999984 55 999999998
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.91 E-value=2.6e-26 Score=209.46 Aligned_cols=177 Identities=12% Similarity=0.159 Sum_probs=118.8
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc-EEEECCEec------CeEEEEcCCCCCCCCCCHHHH
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG-TIKLSFRQI------SDIGYMPQELALHGELSIRET 104 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~------~~ig~v~q~~~l~~~ltv~en 104 (291)
.++|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+.+... .++.+++++.. ++..++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~ 97 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDS 97 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccc
Confidence 4589999999999999999999999999999999999999878 665433221 11222222221 112222
Q ss_pred HHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhH-HHHHHHHHHHhcCCCEEEEcccCC---C---CCH-HH
Q psy6612 105 FRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQ-QRRISFAVSLLHNPKLLILDEPTV---G---LDP-IL 176 (291)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGq-kQrv~iAral~~~p~llllDEPts---g---LD~-~~ 176 (291)
+.... .+.++..+.+.++++..++. ....+.++|.++ +||+. |+++.++|+++|+||||+ + +|. ..
T Consensus 98 l~~~~----~~~~~~~~~~~~~l~~~~l~-i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~ 171 (296)
T 1cr0_A 98 LKREI----IENGKFDQWFDELFGNDTFH-LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKM 171 (296)
T ss_dssp HHHHH----HHHTHHHHHHHHHHSSSCEE-EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHH
T ss_pred cccCC----CCHHHHHHHHHHHhccCCEE-EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHH
Confidence 22110 11222333444444333331 223346788888 67777 999999999999999999 5 565 67
Q ss_pred HHHHHHHHHHhHh-CCcEEEEEccCH--h--------------------HHhh-hCeEEEEeCCEE
Q psy6612 177 SQIIWDRLKEMAL-NGKTIIITTHYI--E--------------------EAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 177 ~~~i~~~l~~l~~-~g~tii~~tHd~--~--------------------~~~~-~d~i~~l~~G~i 218 (291)
...+.+.|+++++ .|.|||++||+. + .+.. ||+|++|++|+.
T Consensus 172 ~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 172 IDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 7889999999975 489999999995 4 5655 999999998864
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.91 E-value=5.4e-25 Score=216.65 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=122.3
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHH
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ 118 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 118 (291)
+..+++|++++|+||||||||||+++++|...|+ |+ +-+.|.+|++. .++.++.. .++...
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~--------~vi~~~~ee~~----~~l~~~~~----~~g~~~-- 335 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE--------RAILFAYEESR----AQLLRNAY----SWGMDF-- 335 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC--------CEEEEESSSCH----HHHHHHHH----TTSCCH--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC--------CEEEEEEeCCH----HHHHHHHH----HcCCCH--
Confidence 4589999999999999999999999999998874 53 12556677642 13333332 123221
Q ss_pred HHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH-----HHHHHHHHHHHhHhCCc
Q psy6612 119 IETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI-----LSQIIWDRLKEMALNGK 192 (291)
Q Consensus 119 ~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~-----~~~~i~~~l~~l~~~g~ 192 (291)
.+ +...|+.. .+.++.+||+||+||+++|+++..+|+++|+| ||++||+. .+..+.++++.+++.|.
T Consensus 336 -----~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~ 408 (525)
T 1tf7_A 336 -----EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEI 408 (525)
T ss_dssp -----HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCC
Confidence 12 22345533 57788999999999999999999999999999 99999999 99999999999988899
Q ss_pred EEEEEccCH----------hHHhh-hCeEEEEeCCE
Q psy6612 193 TIIITTHYI----------EEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 193 tii~~tHd~----------~~~~~-~d~i~~l~~G~ 217 (291)
|||++||+. ..+.. ||++++|++|+
T Consensus 409 tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 409 TGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999998 66765 99999999875
No 90
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=1.9e-24 Score=223.35 Aligned_cols=148 Identities=21% Similarity=0.346 Sum_probs=123.4
Q ss_pred CCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCCh----------HHHHHHHHHHHHHcCCCC--CCC
Q psy6612 70 TLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTD----------DQIETRSKEILKLLELPP--AKK 137 (291)
Q Consensus 70 ~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~--~~~ 137 (291)
.|....|+++|+++.+ +..+||.|++.|+..+ ..+. +++.+++ +.+..+||.. .++
T Consensus 433 ~~~~l~v~~~g~~i~q----------~~~ltV~e~~~f~e~l-~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR 500 (972)
T 2r6f_A 433 KKESLAVLVGGKHIGE----------VTAMSVTEALAFFDGL-ELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSR 500 (972)
T ss_dssp CTTTTTEESSSCBHHH----------HHTSBHHHHHHHHHHC-CCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSS
T ss_pred CHHHheeEECCCcHHH----------HhhCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCC
Confidence 4455667777766543 2348999999986543 3444 2344555 4588999974 589
Q ss_pred CcCcCChhHHHHHHHHHHHhcCC--CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE--
Q psy6612 138 IVGALSGGQQRRISFAVSLLHNP--KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM-- 213 (291)
Q Consensus 138 ~~~~LSgGqkQrv~iAral~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l-- 213 (291)
++.+|||||||||+||++|+.+| ++|||||||+||||.....+++.|++|++.|.|||+||||++++..||+|++|
T Consensus 501 ~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp 580 (972)
T 2r6f_A 501 SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGP 580 (972)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCC
Confidence 99999999999999999999985 99999999999999999999999999988899999999999998779999999
Q ss_pred ----eCCEEEEEechhHHHH
Q psy6612 214 ----RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 214 ----~~G~i~~~~~~~~~~~ 229 (291)
++|+++++|+++++..
T Consensus 581 gaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 581 GAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp SSGGGCCSEEEEECTTTTTT
T ss_pred CccCCCCEEEEecCHHHHHh
Confidence 7999999999987754
No 91
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.91 E-value=5.2e-26 Score=202.56 Aligned_cols=176 Identities=12% Similarity=0.127 Sum_probs=113.5
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
-+++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..-+.++|++|+. +++.+|+.+++.+.
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-~~~~~i~~v~~d~-~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-QRQRKVVILSQDR-FYKVLTAEQKAKAL 82 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-GGGCSEEEEEGGG-GBCCCCHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-ccCCceEEEeCCc-CccccCHhHhhhhh
Confidence 46778999999999999999999999999999999999976 555444 1125699999995 77789999998765
Q ss_pred ccccCCC--hHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 109 GYMFDMT--DDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 109 ~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
...+... .....+.+.+.++.+. ...++++..||+||+||+++ ++++.+|+++|+|||....|.. +.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~ 152 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNIV-EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRD 152 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHHH-TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHT
T ss_pred ccCCCCCCcccccHHHHHHHHHHHH-CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHH
Confidence 4433322 1111233444455431 23567889999999999988 6889999999999999888864 222
Q ss_pred hHhCCcEEEEEccCHhHH-hh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 187 MALNGKTIIITTHYIEEA-KG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 187 l~~~g~tii~~tHd~~~~-~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+ .+.+|+++||+...+ .. ++++ ++|+ +.+++.+.
T Consensus 153 ~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 153 M--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp T--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred h--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 2 378999999985555 44 4444 6663 45555443
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.90 E-value=4.7e-25 Score=229.16 Aligned_cols=171 Identities=16% Similarity=0.155 Sum_probs=121.0
Q ss_pred Ccccccc-cceEEEEeEEEEE-----CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHH--------HcCCCCCccE
Q psy6612 10 DPEIIEV-KHSVAVTSAYKKI-----GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI--------VGRNTLDAGT 75 (291)
Q Consensus 10 ~~~~~~~-~~~l~~~~l~~~~-----~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i--------~gl~~p~~G~ 75 (291)
+|.+.+- ...+.+++....+ +++.+++|+||++++|++++|+||||||||||||++ +|...|.++.
T Consensus 621 rP~~~~~~~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~ 700 (934)
T 3thx_A 621 RPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA 700 (934)
T ss_dssp CCEEECTTSCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred CCeeccCCCcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence 4544331 3456666655433 245789999999999999999999999999999999 6655554332
Q ss_pred EEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHH
Q psy6612 76 IKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 76 I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAra 155 (291)
. ++.+ . +++..+|+. +.....+|+||+++..+|++
T Consensus 701 ~---------~~~~-------d---------------------------~i~~~ig~~--d~l~~~lStf~~e~~~~a~i 735 (934)
T 3thx_A 701 E---------VSIV-------D---------------------------CILARVGAG--DSQLKGVSTFMAEMLETASI 735 (934)
T ss_dssp E---------EECC-------S---------------------------EEEEECC-----------CHHHHHHHHHHHH
T ss_pred c---------chHH-------H---------------------------HHHHhcCch--hhHHHhHhhhHHHHHHHHHH
Confidence 1 1110 0 011122221 22344578888888888888
Q ss_pred H--hcCCCEEEEcccCCCCCHHHHHHH-HHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechh
Q psy6612 156 L--LHNPKLLILDEPTVGLDPILSQII-WDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 156 l--~~~p~llllDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~ 225 (291)
+ +.+|+++||||||+|+|+.....+ +.++..+++ .|+|+|++||+.+....||++..+.+|++...+..+
T Consensus 736 l~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~ 809 (934)
T 3thx_A 736 LRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEE 809 (934)
T ss_dssp HHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETT
T ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCC
Confidence 8 999999999999999999998888 677788875 489999999998877779999999999987665443
No 93
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.90 E-value=3.2e-24 Score=220.54 Aligned_cols=166 Identities=16% Similarity=0.244 Sum_probs=133.6
Q ss_pred CCCccHHHHHHHHHcC---------CCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCC---------
Q psy6612 53 PSGCGKTTLLNCIVGR---------NTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDM--------- 114 (291)
Q Consensus 53 pNGaGKSTLl~~i~gl---------~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~--------- 114 (291)
.+..||+|+.+.+... +.|.+|+|.++|+++..+ ..+++.+.+.|.......
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~----------~~~~v~e~~~~~~~~~~~~~~~~~~~~ 339 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITEL----------SRLPLARVSELLRPYAEEREPGHAERV 339 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHH----------HHSBHHHHHHHHHHHHTTCSSCSTTSS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHH----------hhcCHHHHHHHHHhhhhhhhhcccchh
Confidence 4567999999988774 345688999999887431 114555555544332110
Q ss_pred --C----------hHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC--CEEEEcccCCCCCHHHHH
Q psy6612 115 --T----------DDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP--KLLILDEPTVGLDPILSQ 178 (291)
Q Consensus 115 --~----------~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p--~llllDEPtsgLD~~~~~ 178 (291)
. ..++.++++ .+..+|+.+ .++++.+|||||||||+||++|+.+| ++|||||||++||+....
T Consensus 340 ~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 340 KNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred hcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHH
Confidence 0 123455555 678899975 58999999999999999999999999 599999999999999999
Q ss_pred HHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHH
Q psy6612 179 IIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 179 ~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
.++++|++|++.|.|||+||||++.+..||+|++| ++|++++.|+++++..
T Consensus 419 ~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 419 ALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 99999999998899999999999987779999999 7999999999988754
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.89 E-value=3e-25 Score=195.71 Aligned_cols=174 Identities=16% Similarity=0.142 Sum_probs=107.6
Q ss_pred EEEEeEEEEECCEeeEeeeeE-EEeCCcEEEEECCCCccHHHHHHHHH--cCCCCCccEEEECCEec--------CeEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNL-NVPENKIYGLLGPSGCGKTTLLNCIV--GRNTLDAGTIKLSFRQI--------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl-~i~~Gei~~liGpNGaGKSTLl~~i~--gl~~p~~G~I~~~g~~~--------~~ig~ 88 (291)
++++.++..+ +.|+++-- .|++|++++|+||||||||||+++|+ |+..+..|.+.+++... +.+||
T Consensus 7 ~~~~~i~tg~---~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 83 (251)
T 2ehv_A 7 QPVRRVKSGI---PGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGW 83 (251)
T ss_dssp -CCCEECCSC---TTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTC
T ss_pred cccceeecCC---HhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCC
Confidence 3344454433 23554411 79999999999999999999999999 76566777777766432 12444
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
.+|+...++.+++.++..... .. .. ..........+.++.+....+..-..+|+++++|||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-------~~---~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep 144 (251)
T 2ehv_A 84 DFEKYEKEGKIAIVDGVSSVV-------GL---PS---------EEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSI 144 (251)
T ss_dssp CHHHHHHTTSEEEEC--------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECH
T ss_pred ChHHHhhcCCEEEEEcccccc-------cc---cc---------ccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccH
Confidence 444332222222222111000 00 00 000111222344555555555555689999999999
Q ss_pred CCCCC-----HHHHHHHHHHHHHhHhCCcEEEEEccCHhHH---------hh-h-CeEEEEeC
Q psy6612 169 TVGLD-----PILSQIIWDRLKEMALNGKTIIITTHYIEEA---------KG-A-HNIGLMRD 215 (291)
Q Consensus 169 tsgLD-----~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~---------~~-~-d~i~~l~~ 215 (291)
|++|| +..+..+.++++.+++.|+|||++||+++++ .. | |++++|++
T Consensus 145 ~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 145 PSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 99998 7777779999999987799999999999998 44 7 99999964
No 95
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.89 E-value=6.8e-23 Score=196.75 Aligned_cols=78 Identities=18% Similarity=0.148 Sum_probs=70.3
Q ss_pred CCcCcCChhHHHHHHHHHHHh----cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEE
Q psy6612 137 KIVGALSGGQQRRISFAVSLL----HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGL 212 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAral~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~ 212 (291)
+++..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+++.++|++||+...+..||+++.
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence 345569999999999999999 5799999999999999999999999999987557899999999877667999998
Q ss_pred Ee
Q psy6612 213 MR 214 (291)
Q Consensus 213 l~ 214 (291)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 96
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.89 E-value=4.3e-23 Score=213.92 Aligned_cols=131 Identities=22% Similarity=0.315 Sum_probs=112.7
Q ss_pred CCCCHHHHHHHhccccCCCh----------HHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcC--CCE
Q psy6612 97 GELSIRETFRYYGYMFDMTD----------DQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHN--PKL 162 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~--p~l 162 (291)
..+||.|.+.|+..+ +.+. +++.+++ +.+..+||.. .++++.+|||||||||+||++|+.+ |++
T Consensus 467 ~~ltV~e~l~f~enl-~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~l 544 (993)
T 2ygr_A 467 CELSIADCADFLNAL-TLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVL 544 (993)
T ss_dssp SHHHHHHHHHTTTTT-TSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred hhCCHHHHHHHHHhc-CCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcE
Confidence 447899998885433 4444 2344454 4578899974 5899999999999999999999999 599
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.....+++.|++|++.|.|||+||||++++..||+|++| ++|++++.|+++++..
T Consensus 545 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 545 YVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 999999999999999999999999998899999999999998779999999 7999999999988765
No 97
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.89 E-value=1e-25 Score=207.33 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=89.1
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC-CCCCccEEEECCEec------CeEEEEcCCCCC
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR-NTLDAGTIKLSFRQI------SDIGYMPQELAL 95 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl-~~p~~G~I~~~g~~~------~~ig~v~q~~~l 95 (291)
.|++++|+++.++++++|+| +|+||||||||||+++|+|. ..|++| +.++|.++ ..+++++|...+
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence 47899999999999999998 99999999999999999998 889999 87766543 357899999888
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC-CCH
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG-LDP 174 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg-LD~ 174 (291)
+..+|++|+..++..... .+.....+..+.+ ..++++.++|||||||+.+|||++ ++++||||++ ||+
T Consensus 75 ~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l~~-----~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~ 143 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINC--RDCFKTIISYIDE-----QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKP 143 (301)
T ss_dssp CEEEEEEEEC-------------CTTHHHHHHH-----HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCH
T ss_pred ccCcchhhhhhhhhhcCc--HHHHHHHHHHHHH-----HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCH
Confidence 888899988765432110 0000111111111 135778899999999999999986 9999999985 999
Q ss_pred HHHHHHHHHHHHhHhC-CcEEEEEccCHh
Q psy6612 175 ILSQIIWDRLKEMALN-GKTIIITTHYIE 202 (291)
Q Consensus 175 ~~~~~i~~~l~~l~~~-g~tii~~tHd~~ 202 (291)
... ++++++.+. +.++|+++||+.
T Consensus 144 ~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 144 LDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 873 566666543 789999999974
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.89 E-value=1.5e-24 Score=221.61 Aligned_cols=147 Identities=17% Similarity=0.213 Sum_probs=112.9
Q ss_pred cceEEEEeEEEEE---CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEECCEecCeEEEEcCC
Q psy6612 17 KHSVAVTSAYKKI---GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-LDAGTIKLSFRQISDIGYMPQE 92 (291)
Q Consensus 17 ~~~l~~~~l~~~~---~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~~~~ig~v~q~ 92 (291)
+..+++++..... ++..+++|+||+ |++++|+||||||||||||+|+|+.. ++.|.+.-. ....+++++|
T Consensus 548 ~~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa--~~~~i~~v~~- 621 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA--EEAHLPLFDG- 621 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS--SEEEECCCSE-
T ss_pred CCcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh--hccceeeHHH-
Confidence 5667787775444 456789999999 99999999999999999999999874 677865311 1134666665
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH--hcCCCEEEEccc--
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL--LHNPKLLILDEP-- 168 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral--~~~p~llllDEP-- 168 (291)
+++.+++.||+.. .+|+||+|++.+|+++ +.+|+++|||||
T Consensus 622 --i~~~~~~~d~l~~---------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 622 --IYTRIGASDDLAG---------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp --EEEECCC---------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred --hhccCCHHHHHHh---------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 4455566555421 3689999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHhHhCCcEEEEEccCHhHHhhh
Q psy6612 169 -TVGLDPILS-QIIWDRLKEMALNGKTIIITTHYIEEAKGA 207 (291)
Q Consensus 169 -tsgLD~~~~-~~i~~~l~~l~~~g~tii~~tHd~~~~~~~ 207 (291)
|++||+.+. ..+++.|.+ .|.|+|++||+.++...|
T Consensus 667 GTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG 704 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC
T ss_pred CCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh
Confidence 999999876 467777766 478999999999887544
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.89 E-value=6.7e-24 Score=220.02 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=110.7
Q ss_pred CcccccccceEEEEeEEEEE-------CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECCE
Q psy6612 10 DPEIIEVKHSVAVTSAYKKI-------GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFR 81 (291)
Q Consensus 10 ~~~~~~~~~~l~~~~l~~~~-------~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~ 81 (291)
+|.+.+ +..+.+++..... +++.+++|+||++++|++++|+||||||||||||+++++.-. ..|
T Consensus 632 ~P~~~~-~~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g------- 703 (918)
T 3thx_B 632 RPTVQE-ERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG------- 703 (918)
T ss_dssp CCEEES-SCEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT-------
T ss_pred CCcccC-CCcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC-------
Confidence 554443 3456666655433 346789999999999999999999999999999999864211 011
Q ss_pred ecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 82 QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 82 ~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+++|+..... .+ +.+++..+++.+ ..+..+.+|+||+|++.|+++ +.+|
T Consensus 704 -----~~vpa~~~~i---~~---------------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p 753 (918)
T 3thx_B 704 -----SYVPAEEATI---GI---------------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQ 753 (918)
T ss_dssp -----CCBSSSEEEE---EC---------------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTT
T ss_pred -----ccccchhhhh---hH---------------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCC
Confidence 0111110000 00 001122233322 345678899999999999999 8999
Q ss_pred CEEEEcccCCCCCHHHHHHHH-HHHHHhHh-CCcEEEEEccCHhHHhhhCe
Q psy6612 161 KLLILDEPTVGLDPILSQIIW-DRLKEMAL-NGKTIIITTHYIEEAKGAHN 209 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~-~~l~~l~~-~g~tii~~tHd~~~~~~~d~ 209 (291)
+++||||||+|||+.....+. .++..+++ .|.|+|++||+++.+..||+
T Consensus 754 ~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 754 SLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp CEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 999999999999999999887 77777864 58999999999988765554
No 100
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.88 E-value=3.7e-24 Score=193.37 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=100.3
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++ +|++|+..- + .
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i---~~~~~~~~~-----------~---v 75 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI---EYVFKHKKS-----------I---V 75 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC---CSCCCCSSS-----------E---E
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc---eeecCCcce-----------e---e
Confidence 5899999 9999999999999999999999999999998 99999988653 455554210 0 0
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCC
Q psy6612 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g 191 (291)
.+ ..++++. ..| |++||+||.++|+++++|||| |+.+...++ +. ++.|
T Consensus 76 ~q--------------~~~gl~~-----~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g 123 (261)
T 2eyu_A 76 NQ--------------REVGEDT-----KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETG 123 (261)
T ss_dssp EE--------------EEBTTTB-----SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTT
T ss_pred eH--------------HHhCCCH-----HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccC
Confidence 00 0233321 222 899999999999999999999 998865543 33 3468
Q ss_pred cEEEEEccCHhHHhhhCeEEEEe
Q psy6612 192 KTIIITTHYIEEAKGAHNIGLMR 214 (291)
Q Consensus 192 ~tii~~tHd~~~~~~~d~i~~l~ 214 (291)
.+|+++||+.+....|||++.|.
T Consensus 124 ~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 124 HLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp CEEEEEECCSSHHHHHHHHHHTS
T ss_pred CEEEEEeCcchHHHHHHHHhhhc
Confidence 99999999988555588877664
No 101
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.87 E-value=3.4e-22 Score=165.91 Aligned_cols=83 Identities=24% Similarity=0.289 Sum_probs=74.1
Q ss_pred CCCCcCcCChhHHHHHHHH------HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhC
Q psy6612 135 AKKIVGALSGGQQRRISFA------VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAH 208 (291)
Q Consensus 135 ~~~~~~~LSgGqkQrv~iA------ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d 208 (291)
.++++.+||||||||++|| |||+.+|+++||||||+|||+.++..+.+.|.++.++|.|||++|||++....||
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d 130 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 130 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCC
Confidence 3578899999999999876 8999999999999999999999999999999999766899999999995444599
Q ss_pred eEEEE--eCCE
Q psy6612 209 NIGLM--RDDQ 217 (291)
Q Consensus 209 ~i~~l--~~G~ 217 (291)
++++| .+|.
T Consensus 131 ~ii~l~~~~g~ 141 (148)
T 1f2t_B 131 HVIRISLENGS 141 (148)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEcCCCe
Confidence 99999 4553
No 102
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.87 E-value=2.9e-24 Score=187.04 Aligned_cols=144 Identities=18% Similarity=0.187 Sum_probs=92.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCC-------CccEEEECCEec---CeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-------DAGTIKLSFRQI---SDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-------~~G~I~~~g~~~---~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
.+++|++++|+||||||||||+++|+|+..+ ..|.+++++... ..+++++|...+++. |+.+|+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~--- 96 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-EVLKHIYV--- 96 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHH-HHHHTEEE---
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHH-HHhhcEEE---
Confidence 6899999999999999999999999996655 233555555431 123333333333322 33333221
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhH-HHHHHHHHHHhc-------CCCEEEEcccCCCCCHH-------
Q psy6612 111 MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQ-QRRISFAVSLLH-------NPKLLILDEPTVGLDPI------- 175 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGq-kQrv~iAral~~-------~p~llllDEPtsgLD~~------- 175 (291)
....+.++ ++.+..+++++. +|+++++||||+++|+.
T Consensus 97 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~ 148 (231)
T 4a74_A 97 ----------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL 148 (231)
T ss_dssp ----------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHH
T ss_pred ----------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcch
Confidence 11123332 233444444444 99999999999999984
Q ss_pred H-----HHHHHHHHHHhH-hCCcEEEEEccCHhH----Hhh-hCeEEEEeCC
Q psy6612 176 L-----SQIIWDRLKEMA-LNGKTIIITTHYIEE----AKG-AHNIGLMRDD 216 (291)
Q Consensus 176 ~-----~~~i~~~l~~l~-~~g~tii~~tHd~~~----~~~-~d~i~~l~~G 216 (291)
. ...+++.|.+++ +.|.|||++||+... +.. ||++++|++|
T Consensus 149 ~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 149 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 2 236778888876 458999999996554 766 9999999875
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.87 E-value=2.2e-25 Score=192.97 Aligned_cols=145 Identities=17% Similarity=0.141 Sum_probs=116.9
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC--CCCCHHHHHHHhccccCCChHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH--GELSIRETFRYYGYMFDMTDDQI 119 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~--~~ltv~enl~~~~~~~~~~~~~~ 119 (291)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+|+.++..+.. +.+....
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------~i~~v~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~ 66 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------RVALLPMDHYYKDLGHLPLEERLRVNY---DHPDAFD 66 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------GEEEEEGGGCBCCCTTSCHHHHHHSCT---TSGGGBC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------CeEEEecCccccCcccccHHHhcCCCC---CChhhhh
Confidence 578999999999999999999999999875 589999998776 5679988876532 2122222
Q ss_pred HHHHHHHHHHcCCCC-CCCCcCcCChhHH----HHHHHHHHHhcCCCEEEEcccCCC-------CCHHHHHHHHHHHHHh
Q psy6612 120 ETRSKEILKLLELPP-AKKIVGALSGGQQ----RRISFAVSLLHNPKLLILDEPTVG-------LDPILSQIIWDRLKEM 187 (291)
Q Consensus 120 ~~~~~~~l~~~~l~~-~~~~~~~LSgGqk----Qrv~iAral~~~p~llllDEPtsg-------LD~~~~~~i~~~l~~l 187 (291)
.+++.++++.+++.. .+.++.++|+||+ ||+++|++++.+|+++++||||++ ||+.....+.+.+.+.
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~ 146 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRD 146 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 345667777777754 5668889999974 788999999999999999999999 9999999999999876
Q ss_pred -HhCCcEEEEEccCHh
Q psy6612 188 -ALNGKTIIITTHYIE 202 (291)
Q Consensus 188 -~~~g~tii~~tHd~~ 202 (291)
.+.|.|++.++|++.
T Consensus 147 ~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 147 VLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHSCCCHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHH
Confidence 466899999999853
No 104
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.86 E-value=5.5e-23 Score=211.06 Aligned_cols=174 Identities=15% Similarity=0.216 Sum_probs=116.2
Q ss_pred CcccccccceEEEEeEEEEE-----CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECCEec
Q psy6612 10 DPEIIEVKHSVAVTSAYKKI-----GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFRQI 83 (291)
Q Consensus 10 ~~~~~~~~~~l~~~~l~~~~-----~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~ 83 (291)
+|.+.+ +..+.+++..... +++.+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..|.. +-.. .
T Consensus 569 ~P~~~~-~~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~-~ 644 (800)
T 1wb9_A 569 CPTFID-KPGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQ-K 644 (800)
T ss_dssp CCEECS-SSCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSS-E
T ss_pred ccEECC-CCCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchh-c
Confidence 454433 4456666643222 456799999999 99999999999999999999999997422 22311 0000 0
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
..+++++| ++..+++.||+. ...+.+|++|++ ++.+...+.+|+++
T Consensus 645 ~~i~~~~~---i~~~~~~~d~l~------------------------------~~~stf~~e~~~-~~~il~~a~~psLl 690 (800)
T 1wb9_A 645 VEIGPIDR---IFTRVGAADDLA------------------------------SGRSTFMVEMTE-TANILHNATEYSLV 690 (800)
T ss_dssp EEECCCCE---EEEEEC-----------------------------------------CHHHHHH-HHHHHHHCCTTEEE
T ss_pred ccceeHHH---HHhhCCHHHHHH------------------------------hhhhhhhHHHHH-HHHHHHhccCCCEE
Confidence 22444433 333334444332 122346777765 44445568999999
Q ss_pred EEcccCCCCCHHHHHHH-HHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 164 ILDEPTVGLDPILSQII-WDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
|||||++|+|+.....+ ++++..+++ .|.++|++||+.+.+..||++..+.+|++..+
T Consensus 691 LLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp EEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred EEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 99999999999877775 788888886 48999999999988777888777778776554
No 105
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.85 E-value=1.2e-23 Score=193.99 Aligned_cols=143 Identities=13% Similarity=0.044 Sum_probs=106.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------CeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------------SDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------------~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++ ..++|++|++.+++.+++++|+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999775 1489999999998888999998754
Q ss_pred ccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH
Q psy6612 109 GYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 188 (291)
.. .+.. ..+++..|..+ .....++...+||++||||++.+|+.++| .||+.+...+++.++++.
T Consensus 181 ~~-~~~d--------~~llDt~G~~~--~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~ 244 (304)
T 1rj9_A 181 KA-RGYD--------LLFVDTAGRLH--TKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFH 244 (304)
T ss_dssp HH-HTCS--------EEEECCCCCCT--TCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHH
T ss_pred Hh-CCCC--------EEEecCCCCCC--chHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHH
Confidence 21 1100 01223334322 22223444558999999999999994444 455555556677777776
Q ss_pred hC-CcEEEEEccCHh
Q psy6612 189 LN-GKTIIITTHYIE 202 (291)
Q Consensus 189 ~~-g~tii~~tHd~~ 202 (291)
+. |.|+|++||+.+
T Consensus 245 ~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 245 EAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHCCSEEEEECTTS
T ss_pred HHcCCcEEEEECCcc
Confidence 43 899999999854
No 106
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.84 E-value=2.6e-24 Score=215.32 Aligned_cols=177 Identities=14% Similarity=0.245 Sum_probs=112.3
Q ss_pred eEEEEeEEEEECCE--eeEeee----------eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECCEec--
Q psy6612 19 SVAVTSAYKKIGNH--VVLKGL----------NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFRQI-- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~--~~L~~v----------sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~-- 83 (291)
++.++++++.|+.+ ++|+.+ +++++. +||+||||||||||+++|+|+..| ++|.|+++|.++
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 46678899999753 355544 366665 999999999999999999999988 799999999874
Q ss_pred ----------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHH
Q psy6612 84 ----------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iA 153 (291)
..+||+||++.+++.+||.+|+.+.....+.. ..++. . +++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~-------------~~~~s--~-----------~~i~l~ 140 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE-------------GMGIS--H-----------ELITLE 140 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS-------------SSCCC--S-----------CCEEEE
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC-------------ccccc--h-----------HHHHHH
Confidence 25899999999999999999987642211000 00111 1 112233
Q ss_pred HHHhcCCCEEEEccc------CCCCCHHHHHHHHHHHHHhHh--CCcEEEEEccCHhHH--------hh-----hCeEEE
Q psy6612 154 VSLLHNPKLLILDEP------TVGLDPILSQIIWDRLKEMAL--NGKTIIITTHYIEEA--------KG-----AHNIGL 212 (291)
Q Consensus 154 ral~~~p~llllDEP------tsgLD~~~~~~i~~~l~~l~~--~g~tii~~tHd~~~~--------~~-----~d~i~~ 212 (291)
.+....|+++|+||| |+|||+..+.++.++++++.+ .+.+++++||+++.+ .. +..|++
T Consensus 141 i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 141 ISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp EEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred hcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 334568999999999 999999999999999999753 367889999997632 21 245788
Q ss_pred EeCCEEEEEech
Q psy6612 213 MRDDQYIGRLVH 224 (291)
Q Consensus 213 l~~G~i~~~~~~ 224 (291)
+.++.++..++.
T Consensus 221 lTK~Dlv~~g~~ 232 (608)
T 3szr_A 221 LTKPDLVDKGTE 232 (608)
T ss_dssp EECGGGSSSSST
T ss_pred ecchhhcCcccH
Confidence 887766655544
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.84 E-value=9.1e-23 Score=177.29 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=111.4
Q ss_pred CEeeEeeeeE-EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhc
Q psy6612 31 NHVVLKGLNL-NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109 (291)
Q Consensus 31 ~~~~L~~vsl-~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~ 109 (291)
+.+.|+++.. .+++|++++|+||||||||||++.|++...++.|.|.+.+.+ .+..+......
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~----------------~~~~~~~~~~~ 71 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE----------------ESRDSIIRQAK 71 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS----------------SCHHHHHHHHH
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc----------------cCHHHHHHHHH
Confidence 3557888888 899999999999999999999999999887777777653321 12221111100
Q ss_pred cccCCChHHHHHH----HHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCC--EEEEcccCCCC--CHHHHHHHH
Q psy6612 110 YMFDMTDDQIETR----SKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPK--LLILDEPTVGL--DPILSQIIW 181 (291)
Q Consensus 110 ~~~~~~~~~~~~~----~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~--llllDEPtsgL--D~~~~~~i~ 181 (291)
. .+......... ++.....++ . .......|.++.++...+.+...+|+ ++++||||+++ |+..+..++
T Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~ 147 (235)
T 2w0m_A 72 Q-FNWDFEEYIEKKLIIIDALMKEKE-D--QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKIS 147 (235)
T ss_dssp H-TTCCCGGGBTTTEEEEECCC-----C--TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHH
T ss_pred H-hcchHHHHhhCCEEEEeccccccC-c--eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHH
Confidence 0 01100000000 000000000 0 01123459999999888888888999 99999999888 999999999
Q ss_pred HHHHHhH-hCCcEEEEEccCH--------hHHhh-hCeEEEEeCC
Q psy6612 182 DRLKEMA-LNGKTIIITTHYI--------EEAKG-AHNIGLMRDD 216 (291)
Q Consensus 182 ~~l~~l~-~~g~tii~~tHd~--------~~~~~-~d~i~~l~~G 216 (291)
+.|++++ +.|.|||++||+. ..+.. ||++++|++.
T Consensus 148 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 148 YYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9999986 5689999999999 44665 9999999864
No 108
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.83 E-value=1.2e-22 Score=190.50 Aligned_cols=156 Identities=17% Similarity=0.117 Sum_probs=103.2
Q ss_pred EeeEeee-eEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCc----cE-EEECCEec---CeEEEEcCCCCCCCCCC
Q psy6612 32 HVVLKGL-NLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDA----GT-IKLSFRQI---SDIGYMPQELALHGELS 100 (291)
Q Consensus 32 ~~~L~~v-sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~----G~-I~~~g~~~---~~ig~v~q~~~l~~~lt 100 (291)
.+.|+.+ ++.+++|++++|+||||||||||++.+++.. +|++ |. |++++++. .++++++|...+++. +
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHH-H
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHH-H
Confidence 3456666 6899999999999999999999999999998 6776 57 78887653 245555555544433 4
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHh-------cCCCEEEEcccCCCCC
Q psy6612 101 IRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL-------HNPKLLILDEPTVGLD 173 (291)
Q Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~-------~~p~llllDEPtsgLD 173 (291)
+.+|+.+... .-|.+++|++.++++++ .+|+++|+||||+++|
T Consensus 196 v~~ni~~~~~------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 196 VLKHIYVARA------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp HGGGEEEEEC------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred HhhCEEEEec------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 4444322110 01456777777777777 7899999999999999
Q ss_pred HHH------------HHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 174 PIL------------SQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 174 ~~~------------~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
+.. ..+++..|+++++ .|.|||+++|....... ++.......|++
T Consensus 246 ~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 246 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp HHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCC
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcce
Confidence 862 4566677777764 58999999998765532 233334444443
No 109
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.82 E-value=1.2e-22 Score=194.75 Aligned_cols=162 Identities=14% Similarity=0.168 Sum_probs=101.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc--EEEECCEe---cCeEEEEcC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG--TIKLSFRQ---ISDIGYMPQ 91 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~---~~~ig~v~q 91 (291)
..+|.+++++++|+++.+++++||+| +|+||||||||||+++|+|...|+.| .+.+++.. ...+++++|
T Consensus 9 ~~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp ------CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred cCcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 35688899999999999999999998 99999999999999999999876554 22222111 135899999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCC---EEEEccc
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPK---LLILDEP 168 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~---llllDEP 168 (291)
++.+++.+|++||+.+..... .......+.+.++ ..++.+++||++||||++.+|+ +|++|||
T Consensus 83 ~~~~~~~Ltv~Dt~g~~~~~~---~~~~~~~i~~~i~-----------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 83 EGGVQLLLTIVDTPGFGDAVD---NSNCWQPVIDYID-----------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp ----CEEEEEEECC--------------CHHHHHHHH-----------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred cCCcccceeeeechhhhhhcc---chhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 988888899999987643221 1111112222221 1456678889999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhH
Q psy6612 169 T-VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE 203 (291)
Q Consensus 169 t-sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~ 203 (291)
| ++||+... ++++.+.. +.+||+|.|-.+.
T Consensus 149 t~~~L~~~d~----~~lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 149 SGHGLKPLDI----EFMKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp -CCSCCHHHH----HHHHHHTT-TSEEEEEEESTTS
T ss_pred cccCCCHHHH----HHHHHHhc-cCcEEEEEEcccC
Confidence 9 69999874 44555543 6788888776553
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.82 E-value=1.8e-23 Score=180.31 Aligned_cols=149 Identities=19% Similarity=0.173 Sum_probs=99.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChH
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 117 (291)
|++++|+||||||||||+++|+|+++ ++| |.++|.+. +.+||++|+. ... .+++ ... .....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~-~~~~~ 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRV-GLEPP 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EEC-CCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcc-cccCC
Confidence 78999999999999999999999999 899 98888654 4589999975 111 1111 111 00000
Q ss_pred HHHHHHHHHHHHcCCC-CCCCCcCcCChhHHHHH-HHHH---HHhcCCCEEEEcc--cCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 118 QIETRSKEILKLLELP-PAKKIVGALSGGQQRRI-SFAV---SLLHNPKLLILDE--PTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 118 ~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkQrv-~iAr---al~~~p~llllDE--PtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
..... ...++...+|+|||+++ ++++ |++.+|++||+|| |+..+|+.....+.+++. .
T Consensus 70 -----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~ 134 (189)
T 2i3b_A 70 -----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T 134 (189)
T ss_dssp -----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C
T ss_pred -----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C
Confidence 00000 12455667999999988 4455 6899999999999 899999876555554444 3
Q ss_pred CcEEEE----EccCHhHHhhhCeEEEEeCCEEEE
Q psy6612 191 GKTIII----TTHYIEEAKGAHNIGLMRDDQYIG 220 (291)
Q Consensus 191 g~tii~----~tHd~~~~~~~d~i~~l~~G~i~~ 220 (291)
..++|+ +||+.+ ...+|++..+.+|+++.
T Consensus 135 ~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~ 167 (189)
T 2i3b_A 135 PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFN 167 (189)
T ss_dssp SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEE
T ss_pred CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEE
Confidence 445553 449863 22245555566777654
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=1.1e-21 Score=168.51 Aligned_cols=171 Identities=11% Similarity=0.045 Sum_probs=102.9
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC-----CCCccEEEECCEe-c-CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-----TLDAGTIKLSFRQ-I-SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~-----~p~~G~I~~~g~~-~-~~ig~v~q 91 (291)
+|+++++++.|+ .+++++ |.+++|..++|+|+||||||||++.|+|.. .|+.|++.+.+.- + ..+- +.+
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~-l~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR-LVD 78 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEE-EEE
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEE-EEE
Confidence 578899999997 578888 899999999999999999999999999998 7888877642210 0 0111 112
Q ss_pred CCCCCC----CCC---HHHHHHHhcc----------ccC--CChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHH-
Q psy6612 92 ELALHG----ELS---IRETFRYYGY----------MFD--MTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRR- 149 (291)
Q Consensus 92 ~~~l~~----~lt---v~enl~~~~~----------~~~--~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQr- 149 (291)
.+.... .-. ....+..... ... .........+.+++...++.. ...++..+|+||+||
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~ 158 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQ 158 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHH
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHH
Confidence 222211 000 1111111110 001 111122334555667777753 355678899999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcE
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~t 193 (291)
+..|++++.+|+++++|||||++|+.+...+++.|.++..++.|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 159 LNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 89999999999999999999999999999999999998755543
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.81 E-value=2.3e-20 Score=168.94 Aligned_cols=149 Identities=16% Similarity=0.199 Sum_probs=104.6
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 117 (291)
.+++|++++|+||||||||||++.+++... .|++. .|.+. ..+.|+..+... ..+...+.-.+ .....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~~~~v~~~~~e~~~---~~~~~r~~~~g--~~~~~- 96 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELPTGPVIYLPAEDPP---TAIHHRLHALG--AHLSA- 96 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCCCCCEEEEESSSCH---HHHHHHHHHHH--TTSCH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCCCccEEEEECCCCH---HHHHHHHHHHH--hhcCh-
Confidence 478999999999999999999999998654 56653 34432 346776654321 01112221111 11221
Q ss_pred HHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC--CCCHHH---HHHHHHHHHHhH-hC
Q psy6612 118 QIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV--GLDPIL---SQIIWDRLKEMA-LN 190 (291)
Q Consensus 118 ~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts--gLD~~~---~~~i~~~l~~l~-~~ 190 (291)
....++++.+.+.. .++++..||+||+|++ ++++.+|+++++||||+ ++|+.. ...+++.|++++ +.
T Consensus 97 ---~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 97 ---EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp ---HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 23456678888765 5788999999998765 68889999999999999 999854 488888999886 45
Q ss_pred CcEEEEEccCHhHH
Q psy6612 191 GKTIIITTHYIEEA 204 (291)
Q Consensus 191 g~tii~~tHd~~~~ 204 (291)
|+|||+++|+....
T Consensus 171 g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 171 GCSIVFLHHASKGA 184 (279)
T ss_dssp CCEEEEEEEC----
T ss_pred CCEEEEEecCCCcc
Confidence 99999999998765
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.81 E-value=2.2e-21 Score=182.45 Aligned_cols=130 Identities=17% Similarity=0.148 Sum_probs=92.0
Q ss_pred EeeEeeeeE-------EEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCEecC-----eEEEEcCCCCCCCC
Q psy6612 32 HVVLKGLNL-------NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQIS-----DIGYMPQELALHGE 98 (291)
Q Consensus 32 ~~~L~~vsl-------~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~-----~ig~v~q~~~l~~~ 98 (291)
.+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ .|.|...+.++. ..++++|.....
T Consensus 103 ~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~-- 180 (356)
T 3jvv_A 103 VLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHR-- 180 (356)
T ss_dssp CCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTT--
T ss_pred CCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeecc--
Confidence 345566665 67889999999999999999999999999987 566644332221 111222211100
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHH
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~ 178 (291)
..+|..+ +||+||.++|++|++|||| |+.+
T Consensus 181 -----------------------------------------~~~~~~~----~La~aL~~~PdvillDEp~---d~e~-- 210 (356)
T 3jvv_A 181 -----------------------------------------DTLGFSE----ALRSALREDPDIILVGEMR---DLET-- 210 (356)
T ss_dssp -----------------------------------------TBSCHHH----HHHHHTTSCCSEEEESCCC---SHHH--
T ss_pred -----------------------------------------ccCCHHH----HHHHHhhhCcCEEecCCCC---CHHH--
Confidence 0112111 9999999999999999999 6555
Q ss_pred HHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 179 IIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 179 ~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
++.+.++++.|.||++++|+.+.+..|||++.|..
T Consensus 211 --~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 211 --IRLALTAAETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp --HHHHHHHHHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred --HHHHHHHHhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 44444556679999999999998866999988854
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.80 E-value=8.4e-22 Score=173.51 Aligned_cols=142 Identities=17% Similarity=0.222 Sum_probs=99.3
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEECCEec-----CeEEEEcCCCCCCCCCCH----HHHHHH
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL--DAGTIKLSFRQI-----SDIGYMPQELALHGELSI----RETFRY 107 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~-----~~ig~v~q~~~l~~~ltv----~enl~~ 107 (291)
.-..++|++++|+||||||||||+++|+|+.+| ..|.|.+.+++. ..++|+||++.+|+.+++ .||+.+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 346789999999999999999999999999986 689998887654 248899988766655555 333333
Q ss_pred hccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 108 YGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
.+..++.+. +.+ ..++..++++||| ||+.++.++++.+.
T Consensus 90 ~~~~yg~~~----~~v------------------------------~~~l~~G~illLD-----LD~~~~~~i~~~l~-- 128 (219)
T 1s96_A 90 FGNYYGTSR----EAI------------------------------EQVLATGVDVFLD-----IDWQGAQQIRQKMP-- 128 (219)
T ss_dssp TTEEEEEEH----HHH------------------------------HHHHTTTCEEEEE-----CCHHHHHHHHHHCT--
T ss_pred HhccCCCCH----HHH------------------------------HHHHhcCCeEEEE-----ECHHHHHHHHHHcc--
Confidence 222222211 112 2233347999999 99999999998876
Q ss_pred HhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 188 ALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 188 ~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
++.||+++||+++++.. |+ +.+| .++++++...+
T Consensus 129 --~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 129 --HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp --TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHHH
T ss_pred --CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHHH
Confidence 58999999999999865 22 5666 46666665543
No 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.78 E-value=4.4e-24 Score=181.93 Aligned_cols=168 Identities=15% Similarity=0.207 Sum_probs=112.0
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
|++++|+||||||||||+++|++ |.+|.+.++|.++ ...++++|....++.+++++++.+....+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLA------ 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhc------
Confidence 68999999999999999999997 6789999988765 23566666554344456777765432111000
Q ss_pred HHHHHHHHcCCCCCCCCcCcC--ChhHHHHHHHHH------HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcE
Q psy6612 122 RSKEILKLLELPPAKKIVGAL--SGGQQRRISFAV------SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193 (291)
Q Consensus 122 ~~~~~l~~~~l~~~~~~~~~L--SgGqkQrv~iAr------al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~t 193 (291)
....+++.+......+.+.++ |+||+|++.++. +++.+|+...+|+ +||+..... ++.+..+.+.+.+
T Consensus 73 ~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ 148 (189)
T 2bdt_A 73 QNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERY 148 (189)
T ss_dssp TCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTS
T ss_pred CCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccE
Confidence 000011111000011222345 899999988888 8999999888884 899988888 8888888656789
Q ss_pred EEEEccC-HhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 194 IIITTHY-IEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 194 ii~~tHd-~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+|.+||. +++++. ||+|+ ++|+++.+|+++.+
T Consensus 149 ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 149 FYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp EEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred EEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 9999999 999976 99998 99999888876543
No 116
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.77 E-value=6.5e-22 Score=175.82 Aligned_cols=138 Identities=18% Similarity=0.180 Sum_probs=102.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHH---cCCCCCccEEEECCEec-----CeEEEEcCCCCCCCCCCHHHHHHHhcc-----
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIV---GRNTLDAGTIKLSFRQI-----SDIGYMPQELALHGELSIRETFRYYGY----- 110 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~---gl~~p~~G~I~~~g~~~-----~~ig~v~q~~~l~~~ltv~enl~~~~~----- 110 (291)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+. ..+++++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999 99999999998876432 224556788888888899999875321
Q ss_pred ---ccCCChHHHHHHHHHHHH--HcC------------CCC-CCCCcCcCChhHHHHHHHHHHH-hcCCCEEEEc----c
Q psy6612 111 ---MFDMTDDQIETRSKEILK--LLE------------LPP-AKKIVGALSGGQQRRISFAVSL-LHNPKLLILD----E 167 (291)
Q Consensus 111 ---~~~~~~~~~~~~~~~~l~--~~~------------l~~-~~~~~~~LSgGqkQrv~iAral-~~~p~llllD----E 167 (291)
+.+.+... ..+..+.. .++ +.. .++++.+||| |+ +|+ +.+|++++|| |
T Consensus 106 ~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 106 HWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp CEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred eEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 12222221 12222222 222 112 3577889999 66 788 9999999999 9
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
||++||+.++..+.+.++++.++
T Consensus 177 P~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999998754
No 117
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.77 E-value=1e-20 Score=181.35 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=116.5
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcE--EEEECCCCccHHHHHHHHHcCCCCCccEEEE---CCEecCeEEEEcCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKI--YGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQISDIGYMPQELA 94 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei--~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~~~ig~v~q~~~ 94 (291)
|++++ ++.|++.+ |+++||++++|++ ++|+||||||||||+|+|+|+.- .|.-.. .+.....++|++|++.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc
Confidence 33455 78898888 9999999999999 99999999999999999999841 221111 1112246999999999
Q ss_pred CCCCCCHHHHHHHhccccCC--C---hHHHHHHHHHHHHHc-CCC----C-CCCCc-----------CcCChhHHHHHHH
Q psy6612 95 LHGELSIRETFRYYGYMFDM--T---DDQIETRSKEILKLL-ELP----P-AKKIV-----------GALSGGQQRRISF 152 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~--~---~~~~~~~~~~~l~~~-~l~----~-~~~~~-----------~~LSgGqkQrv~i 152 (291)
+++.+|+.||+.++...... . .+.....+.+++... ++. . .+.++ ..|+-.. +.+
T Consensus 93 l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---iei 169 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVT 169 (427)
T ss_dssp CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHH
T ss_pred cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHH
Confidence 98889999998654321100 0 011233455555554 432 1 12221 2455554 799
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHH-hHhCCcEEEEEccC
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE-MALNGKTIIITTHY 200 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~-l~~~g~tii~~tHd 200 (291)
+++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.+|.|
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999999999987 77779999998875
No 118
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.76 E-value=1.9e-18 Score=146.86 Aligned_cols=81 Identities=23% Similarity=0.216 Sum_probs=71.0
Q ss_pred CCCcCcCChhHHHHHHHHHHHhc----CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 136 KKIVGALSGGQQRRISFAVSLLH----NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 136 ~~~~~~LSgGqkQrv~iAral~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
.+++..||||||||++|||+|+. .|+++||||||+|||+.++..+.++|+++.+ +.++|++||+......||+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMMANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHHTTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHHHhCCEEE
Confidence 46788999999999999999985 4699999999999999999999999999864 468999999988777799997
Q ss_pred EE--eCCE
Q psy6612 212 LM--RDDQ 217 (291)
Q Consensus 212 ~l--~~G~ 217 (291)
.+ .+|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 55 5664
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.74 E-value=3.3e-21 Score=163.78 Aligned_cols=144 Identities=11% Similarity=0.092 Sum_probs=94.6
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++ ..++|++|+.. +.+++.+|+.+......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~ 80 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYA 80 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999998 7889999998764 12456665433 34578888765322110
Q ss_pred CChHHHHHHHHHHHHHcCCCC---CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 114 MTDDQIETRSKEILKLLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~---~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
.... ...++.++..+++.. .+.++..+|+|++|++++||++..+|+++ +|+...+.+++.+..+.+.
T Consensus 81 ~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~ 150 (191)
T 1zp6_A 81 KEGY--FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAF 150 (191)
T ss_dssp HTSC--EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGG
T ss_pred ccCC--eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcc
Confidence 0000 000000111112211 13456789999999999999999999886 6888888888887776433
Q ss_pred CcEEEEEc
Q psy6612 191 GKTIIITT 198 (291)
Q Consensus 191 g~tii~~t 198 (291)
...+|.++
T Consensus 151 ~~~~i~t~ 158 (191)
T 1zp6_A 151 EHHVLPVS 158 (191)
T ss_dssp GGGEEECT
T ss_pred cccEEECC
Confidence 33344443
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.73 E-value=3.3e-18 Score=147.73 Aligned_cols=152 Identities=16% Similarity=0.064 Sum_probs=99.3
Q ss_pred eeEeeeeE-EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 33 VVLKGLNL-NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 33 ~~L~~vsl-~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
+.|+.+.. .+++|++++|+||||||||||++.+++ .+..+ +.|+..+..+ +....... ...
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~-----------v~~i~~~~~~----~~~~~~~~-~~~ 68 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKK-----------VAYVDTEGGF----SPERLVQM-AET 68 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSE-----------EEEEESSCCC----CHHHHHHH-HHT
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCc-----------EEEEECCCCC----CHHHHHHH-HHh
Confidence 35666655 689999999999999999999999999 32222 3333333211 22111111 111
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhH--HHHHHHHHHHhcC-CCEEEEcccCCCCCHHH--------HHHH
Q psy6612 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQ--QRRISFAVSLLHN-PKLLILDEPTVGLDPIL--------SQII 180 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGq--kQrv~iAral~~~-p~llllDEPtsgLD~~~--------~~~i 180 (291)
.+...+ ++++.+ .+.++|+++ +|+++.+++++.+ |+++++||||+.+|+.. ...+
T Consensus 69 ~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~ 134 (220)
T 2cvh_A 69 RGLNPE-------EALSRF-------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQ 134 (220)
T ss_dssp TTCCHH-------HHHHHE-------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHH
T ss_pred cCCChH-------HHhhcE-------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHH
Confidence 122111 122222 233455554 5688888999986 99999999999999743 3456
Q ss_pred HHHHHHhHh-CCcEEEEEccCHh-------------HHhh-hCeEEEEeCC
Q psy6612 181 WDRLKEMAL-NGKTIIITTHYIE-------------EAKG-AHNIGLMRDD 216 (291)
Q Consensus 181 ~~~l~~l~~-~g~tii~~tHd~~-------------~~~~-~d~i~~l~~G 216 (291)
++.|+++++ .|.|||+++|... .+.. ||++++|++.
T Consensus 135 ~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 135 LQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 666778764 4899999999865 4555 9999999753
No 121
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.73 E-value=4.2e-22 Score=186.02 Aligned_cols=166 Identities=13% Similarity=0.168 Sum_probs=119.5
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDI 86 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~i 86 (291)
++++++++.|+...+|+++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.|.++ ..+
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i 109 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRM 109 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGS
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhh
Confidence 4567788888778899999999999999999999999999999999999999999999988764 247
Q ss_pred EEEcCCCCCCCCCC------------HHHHHH-----------------------------HhccccCCC-hHHH---HH
Q psy6612 87 GYMPQELALHGELS------------IRETFR-----------------------------YYGYMFDMT-DDQI---ET 121 (291)
Q Consensus 87 g~v~q~~~l~~~lt------------v~enl~-----------------------------~~~~~~~~~-~~~~---~~ 121 (291)
+|++|++.+|...+ +.|.+. +........ .++. +.
T Consensus 110 ~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~ 189 (337)
T 2qm8_A 110 ARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKK 189 (337)
T ss_dssp TTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCT
T ss_pred eeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHH
Confidence 89999988775321 222211 001111111 0110 01
Q ss_pred HHHHHHHHcCCCCCCC-CcCcCChhHHHHHHHHHHHhc------CCCEEEEcccCCCCCHHHHHHHHHHHHHhHh
Q psy6612 122 RSKEILKLLELPPAKK-IVGALSGGQQRRISFAVSLLH------NPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189 (291)
Q Consensus 122 ~~~~~l~~~~l~~~~~-~~~~LSgGqkQrv~iAral~~------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 189 (291)
.+.+....+.+...|. ...++|+|++|++..|++++. .|+++. ||++|......+++.|.++.+
T Consensus 190 ~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 190 GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 1112222233333452 346789999999999999987 688876 999999999999999998753
No 122
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.71 E-value=1.5e-20 Score=157.62 Aligned_cols=84 Identities=21% Similarity=0.234 Sum_probs=73.8
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCe----EEEEcCCCCCCCC
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD----IGYMPQELALHGE 98 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~----ig~v~q~~~l~~~ 98 (291)
.++++.|+++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.+ -.+++|++.+| .
T Consensus 11 ~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ 88 (158)
T 1htw_A 11 EFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY-R 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT-T
T ss_pred HHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc-c
Confidence 56677888888999999999999999999999999999999999999 999999999976521 12789999888 8
Q ss_pred CCHHHHHHHh
Q psy6612 99 LSIRETFRYY 108 (291)
Q Consensus 99 ltv~enl~~~ 108 (291)
+|+.||+.+.
T Consensus 89 ltv~e~l~~~ 98 (158)
T 1htw_A 89 LADPEELEFM 98 (158)
T ss_dssp CSCTTHHHHS
T ss_pred CCcHHHHHHc
Confidence 9999999654
No 123
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.70 E-value=1.1e-18 Score=164.97 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=87.8
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCEecC-----eEEEEcCCCCCCCCCCHHHHHHH
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQIS-----DIGYMPQELALHGELSIRETFRY 107 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~-----~ig~v~q~~~l~~~ltv~enl~~ 107 (291)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++. .++|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~--------------- 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR--------------- 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE---------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee---------------
Confidence 455554 7899999999999999999999999999998 899977654431 23333331
Q ss_pred hccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 108 YGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
.+|++ +..| +.+|+++|.++|+++++|||+ |+..... .++..
T Consensus 190 ---------------------~~g~~-----~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~~ 231 (372)
T 2ewv_A 190 ---------------------EVGED-----TKSF------ADALRAALREDPDVIFVGEMR---DLETVET---ALRAA 231 (372)
T ss_dssp ---------------------EBTTT-----BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHHH
T ss_pred ---------------------ecCCC-----HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHHH
Confidence 12221 2334 469999999999999999999 7766433 34433
Q ss_pred HhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 188 ALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 188 ~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
..|.+|+.++|+.+....|||++
T Consensus 232 -~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 232 -ETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp -TTTCEEEECCCCCSHHHHHHHHH
T ss_pred -hcCCEEEEEECcchHHHHHHHHH
Confidence 45889999999866334466653
No 124
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.70 E-value=4e-18 Score=160.16 Aligned_cols=116 Identities=20% Similarity=0.160 Sum_probs=90.2
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEEC-CEec-----CeEEEEcCCCCCCCCCCHHHHHH
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-LDAGTIKLS-FRQI-----SDIGYMPQELALHGELSIRETFR 106 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~-g~~~-----~~ig~v~q~~~l~~~ltv~enl~ 106 (291)
-++++++. .+|++++|+||||||||||+|+|+|+.. |++|+|.++ |+.. ..+++++|+..+++..+++++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~-- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF-- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC--
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh--
Confidence 45667764 4899999999999999999999999999 999999987 6432 468999999988888888874
Q ss_pred HhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 107 YYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
. +++.+.++..+.+.++++.+++.. .++++.+|| ||+||++||+++
T Consensus 282 -~--l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 -G--LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp -C--CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred -h--hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 1 234556666677888899999966 688999999 999999999864
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.69 E-value=1e-18 Score=164.42 Aligned_cols=130 Identities=17% Similarity=0.131 Sum_probs=99.3
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEc-CCCCCCCCCCHHHHHH
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMP-QELALHGELSIRETFR 106 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~-q~~~l~~~ltv~enl~ 106 (291)
++++||.+++|++++|+||||||||||+++|+|+++|++|.|+++|..- ..++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~----------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE----------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcccc-----------
Confidence 3999999999999999999999999999999999999999999987421 2345555 32210
Q ss_pred HhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 107 YYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
.+++++.++..|+.++..+|+.+++|||.. ....+.|..
T Consensus 234 ----------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~ 272 (361)
T 2gza_A 234 ----------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINV 272 (361)
T ss_dssp ---------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHH
T ss_pred ----------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHH
Confidence 013444688899999999999999999986 345667777
Q ss_pred hHhCCcEEEEEccCHhHHhhhCeEEEEeCC
Q psy6612 187 MALNGKTIIITTHYIEEAKGAHNIGLMRDD 216 (291)
Q Consensus 187 l~~~g~tii~~tHd~~~~~~~d~i~~l~~G 216 (291)
+...+.|++.++|..+....++|+..+..+
T Consensus 273 l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 273 AASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp HHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred HhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 754346889999997744559999999875
No 126
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.68 E-value=5.5e-20 Score=172.90 Aligned_cols=151 Identities=11% Similarity=-0.082 Sum_probs=97.9
Q ss_pred EeeeeEEEeC--CcEEEEECCCCccHHHHHHHHHcCCCCCc----cEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 35 LKGLNLNVPE--NKIYGLLGPSGCGKTTLLNCIVGRNTLDA----GTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 35 L~~vsl~i~~--Gei~~liGpNGaGKSTLl~~i~gl~~p~~----G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
.+.|+++|.+ |+.++|+||||||||||+|+|+|+++|++ |++++++..-. ++. .+..... +++.+.
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~------~~~-~~~~~~~-~~I~~~ 229 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGG------DEQ-AMQYSDY-PQMALG 229 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSS------CTT-SSCTTTH-HHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCC------Ccc-cCChhHH-HHHHHH
Confidence 4679999999 99999999999999999999999999999 87766321000 001 1111123 444432
Q ss_pred ccccCCChHHHHHHHHHHHHH---cCCCCCCCCcCcCChhHHHHHHHHHHHh-cCCCEEEEcc---cC------CCCCHH
Q psy6612 109 GYMFDMTDDQIETRSKEILKL---LELPPAKKIVGALSGGQQRRISFAVSLL-HNPKLLILDE---PT------VGLDPI 175 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~LSgGqkQrv~iAral~-~~p~llllDE---Pt------sgLD~~ 175 (291)
.. .. ........+. ++....++.+..+|+|++|+..+++++. .+|++++||| |+ .++|+.
T Consensus 230 ~q------~~-~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~ 302 (365)
T 1lw7_A 230 HQ------RY-IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQK 302 (365)
T ss_dssp HH------HH-HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CC
T ss_pred HH------HH-HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHH
Confidence 11 00 0000011111 1111123345567788888888888874 6999999999 65 589999
Q ss_pred HHHHHHHHHHHhH-hCCcEEEEEccC
Q psy6612 176 LSQIIWDRLKEMA-LNGKTIIITTHY 200 (291)
Q Consensus 176 ~~~~i~~~l~~l~-~~g~tii~~tHd 200 (291)
.+..+.+.|.++. +.+.+|++++|.
T Consensus 303 ~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 303 QRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp SHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 9999999999876 348899999985
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=1.1e-17 Score=146.45 Aligned_cols=147 Identities=14% Similarity=0.194 Sum_probs=84.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHc--CCCC-----CccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVG--RNTL-----DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~g--l~~p-----~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
-+++|++++|+||||||||||++.|++ +.+| ..|.+++++.. . .+........ ...+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~-----------~----~~~~~~~~~~-~~~g 83 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG-----------T----FRPERLLAVA-ERYG 83 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS-----------C----CCHHHHHHHH-HHTT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC-----------C----cCHHHHHHHH-HHcC
Confidence 488999999999999999999999999 5655 45666665432 1 1111111111 1112
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHH-HHHHHHHh--cCCCEEEEcccCCCCCHH-------H-----HH
Q psy6612 114 MTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRR-ISFAVSLL--HNPKLLILDEPTVGLDPI-------L-----SQ 178 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQr-v~iAral~--~~p~llllDEPtsgLD~~-------~-----~~ 178 (291)
.... ++++.+. .....+..+... +.-+..++ .+|+++++|||++.+|+. . ..
T Consensus 84 ~~~~-------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~ 150 (243)
T 1n0w_A 84 LSGS-------DVLDNVA------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLA 150 (243)
T ss_dssp CCHH-------HHHHTEE------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHH
T ss_pred CCHH-------HHhhCeE------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHH
Confidence 2211 1122111 112345444332 23233333 589999999999999985 3 34
Q ss_pred HHHHHHHHhHh-CCcEEEEEccCHhHH-------------------h-hhCeEEEEeCC
Q psy6612 179 IIWDRLKEMAL-NGKTIIITTHYIEEA-------------------K-GAHNIGLMRDD 216 (291)
Q Consensus 179 ~i~~~l~~l~~-~g~tii~~tHd~~~~-------------------~-~~d~i~~l~~G 216 (291)
.++..|.++++ .|.|||+++|..... . .||++++|+++
T Consensus 151 ~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 151 RFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 56666666654 489999999976543 1 37888888754
No 128
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.68 E-value=7.5e-21 Score=175.99 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=96.7
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC--------CCCccEEEECCEecCe------------------------EEEE---c
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN--------TLDAGTIKLSFRQISD------------------------IGYM---P 90 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~--------~p~~G~I~~~g~~~~~------------------------ig~v---~ 90 (291)
++++|+|+||||||||+|+|+|+. .|+.|+|.++|.++.. ++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 7899999999876521 3444 4
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHH------------HHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETR------------SKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~------------~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
|++.++++.++.||..++. ....... +..++..+++....+...+||+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~------p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMAD------PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCC------HHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCC------HHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 5555444555555543210 0111001 111223334433212233799999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE 203 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~ 203 (291)
+|+++ ||| ..+.+.|+++. .+.||+++||+...
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~ 191 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID 191 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC
Confidence 99987 999 77888888875 57999999996433
No 129
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.67 E-value=7.2e-18 Score=156.89 Aligned_cols=155 Identities=10% Similarity=0.043 Sum_probs=110.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------------eEEEEcCCCCCCCCCCHHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------------DIGYMPQELALHGELSIRETFR 106 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------------~ig~v~q~~~l~~~ltv~enl~ 106 (291)
.++|++++|+||||||||||+++|+|+++|++|+|.+.|.++. .+.+++|...+++.+++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999998762 2569999999999999999997
Q ss_pred HhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHH
Q psy6612 107 YYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185 (291)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~ 185 (291)
+.... +.. . -+++..|..+ ....+.+|| .++|++..++.+++||.++. ..+.+.++
T Consensus 206 ~~~~~-~~d------~--vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~~~~~ 262 (328)
T 3e70_C 206 HAKAR-GID------V--VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NAIVEQAR 262 (328)
T ss_dssp HHHHH-TCS------E--EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHHHHHH
T ss_pred HHHhc-cch------h--hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHHHHHH
Confidence 64211 000 0 0123334432 233444454 48999998888888885554 35556666
Q ss_pred HhH-hCCcEEEEEccCHhH---------Hhh-hCeEEEEeCCEEE
Q psy6612 186 EMA-LNGKTIIITTHYIEE---------AKG-AHNIGLMRDDQYI 219 (291)
Q Consensus 186 ~l~-~~g~tii~~tHd~~~---------~~~-~d~i~~l~~G~i~ 219 (291)
.+. +.+.|+|++||.-+. +.. .-.|.++..|+-+
T Consensus 263 ~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 263 QFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 666 358999999995421 112 3457777777543
No 130
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.64 E-value=5.1e-17 Score=155.60 Aligned_cols=146 Identities=17% Similarity=0.218 Sum_probs=95.6
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC-----------CCCccEEEECCEecCeEEEEcCCCCCCCCCCHHH
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-----------TLDAGTIKLSFRQISDIGYMPQELALHGELSIRE 103 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~-----------~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~e 103 (291)
-+++||+++.|+.++|+|+||||||||+++|+|.. .|+.|.|.+++. .-..+.+.+.+.... .+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~---~~~~l~DtpGli~~a--~~ 221 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE---ERFTLADIPGIIEGA--SE 221 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS---CEEEEEECCCCCCCG--GG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc---ceEEEEeccccccch--hh
Confidence 47999999999999999999999999999999983 344444444330 111233444433220 00
Q ss_pred HHHHhccccCCChHHHH--HHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHH
Q psy6612 104 TFRYYGYMFDMTDDQIE--TRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181 (291)
Q Consensus 104 nl~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~ 181 (291)
..++.....+ +++..++..+++. +.++.+||+||+|++.+|++|+..|.++++ +.+|+..+ ..+
T Consensus 222 -------~~~L~~~fl~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~ 287 (416)
T 1udx_A 222 -------GKGLGLEFLRHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAV 287 (416)
T ss_dssp -------SCCSCHHHHHHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHH
T ss_pred -------hhhhhHHHHHHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHH
Confidence 0111111111 1122233444444 567889999999999999999999999999 99999877 444
Q ss_pred HHHHHh-HhCCcEEEEEcc
Q psy6612 182 DRLKEM-ALNGKTIIITTH 199 (291)
Q Consensus 182 ~~l~~l-~~~g~tii~~tH 199 (291)
+.+.+. .+.+.+++++|.
T Consensus 288 ~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 288 KALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHhcCCeEEEEEC
Confidence 555444 445777776653
No 131
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.64 E-value=1.5e-17 Score=161.75 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=103.6
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------CeEEEEcCCCCCCCCC
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------------SDIGYMPQELALHGEL 99 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------------~~ig~v~q~~~l~~~l 99 (291)
-+++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+. ..++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 4689999999999999999999999999999999999999999976543 2489999998888888
Q ss_pred CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHh-cCC-CEEEEcccCCCCCHHHH
Q psy6612 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL-HNP-KLLILDEPTVGLDPILS 177 (291)
Q Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~-~~p-~llllDEPtsgLD~~~~ 177 (291)
++++|+.+... .+.. . -+++..|....+ ..|-.-.+|++.+++++. ..| ++||...|++|.|..
T Consensus 363 tV~e~l~~a~~-~~~D------v--VLIDTaGrl~~~---~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al-- 428 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNID------V--LIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-- 428 (503)
T ss_dssp HHHHHHHHHHH-TTCS------E--EEECCCCSCCCH---HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--
T ss_pred HHHHHHHHHHh-cCCC------E--EEEeCCCccchh---hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH--
Confidence 99999987532 1110 0 012222321110 112123358888999774 456 456566688886654
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcc
Q psy6612 178 QIIWDRLKEMAL-NGKTIIITTH 199 (291)
Q Consensus 178 ~~i~~~l~~l~~-~g~tii~~tH 199 (291)
+.++.+.+ -+.|.+++||
T Consensus 429 ----~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 429 ----SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp ----HHHHHHHHHTCCSEEEEEC
T ss_pred ----HHHHHHHhhcCCCEEEEEc
Confidence 33444443 4789999999
No 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.64 E-value=8.1e-16 Score=144.89 Aligned_cols=78 Identities=31% Similarity=0.330 Sum_probs=68.5
Q ss_pred CCcCcCChhHHHHH------HHHHHHhcC-CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCe
Q psy6612 137 KIVGALSGGQQRRI------SFAVSLLHN-PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHN 209 (291)
Q Consensus 137 ~~~~~LSgGqkQrv------~iAral~~~-p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~ 209 (291)
+++..||||||||+ ++|+|++.+ |++|||||||+|||+..+..+.+.|.++.+ +.+||++||+++....||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRELEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGGGGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHHHHhhCCE
Confidence 56789999999988 567899999 999999999999999999999999999753 4689999999875445999
Q ss_pred EEEEeC
Q psy6612 210 IGLMRD 215 (291)
Q Consensus 210 i~~l~~ 215 (291)
+++|++
T Consensus 355 ~~~l~k 360 (371)
T 3auy_A 355 IINVKK 360 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999973
No 133
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.63 E-value=3.7e-16 Score=131.77 Aligned_cols=112 Identities=22% Similarity=0.185 Sum_probs=79.1
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHH
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ 118 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 118 (291)
||++++|+.++|+||||||||||+++|++.+.|++|.. +.| +++.+.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~---------~~~----------~~~~~~~~~~---------- 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR---------GYF----------FDTKDLIFRL---------- 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC---------CCE----------EEHHHHHHHH----------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe---------EEE----------EEHHHHHHHH----------
Confidence 56778899999999999999999999999987766621 111 2333332211
Q ss_pred HHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC-CCCHHHHHHHHHHHHHhHhCCcEEEEE
Q psy6612 119 IETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV-GLDPILSQIIWDRLKEMALNGKTIIIT 197 (291)
Q Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~ 197 (291)
......... . -+...+.+|++|+||||++ ++|+..+..+.+++....++|+++|++
T Consensus 83 -----~~~~~~~~~---~---------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 83 -----KHLMDEGKD---T---------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT 139 (180)
T ss_dssp -----HHHHHHTCC---S---------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -----HHHhcCchH---H---------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 011111000 0 0112234999999999985 999999999999999987788999999
Q ss_pred ccCHh
Q psy6612 198 THYIE 202 (291)
Q Consensus 198 tHd~~ 202 (291)
||...
T Consensus 140 sn~~~ 144 (180)
T 3ec2_A 140 TNYSL 144 (180)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 99753
No 134
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.62 E-value=7.8e-19 Score=172.32 Aligned_cols=164 Identities=19% Similarity=0.182 Sum_probs=110.1
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe-c-----CeEEEEcCCCCCCCCCCHHHHHH
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ-I-----SDIGYMPQELALHGELSIRETFR 106 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-~-----~~ig~v~q~~~l~~~ltv~enl~ 106 (291)
.+++++++.+++|++++|+||||||||||+++|+|+++|++|.|++.|.. + ..+++..|........|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46789999999999999999999999999999999999999999998864 2 23566665543222234444433
Q ss_pred Hhcccc-------CCChHHHHH------------------HHHHHHHHc-----CCCC-----CC---CCcCcCChhHHH
Q psy6612 107 YYGYMF-------DMTDDQIET------------------RSKEILKLL-----ELPP-----AK---KIVGALSGGQQR 148 (291)
Q Consensus 107 ~~~~~~-------~~~~~~~~~------------------~~~~~l~~~-----~l~~-----~~---~~~~~LSgGqkQ 148 (291)
...+.. .....+... .+.++++++ ++.. .+ .....+|+||+|
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~ 407 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL 407 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence 221110 000111100 112222222 2211 11 233468999999
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEE--EccCHhHHhh-hC
Q psy6612 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII--TTHYIEEAKG-AH 208 (291)
Q Consensus 149 rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~--~tHd~~~~~~-~d 208 (291)
|.++|. + | |+||||.....+++.|.++...+.|+++ +||+++++.. |+
T Consensus 408 R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 408 RRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 987752 2 7 9999999888888888888766889885 9999999965 74
No 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.62 E-value=1.9e-17 Score=152.12 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=83.9
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE---CCEec---------CeEEEEcCCCCCC-----CCCCHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQI---------SDIGYMPQELALH-----GELSIRE 103 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~---------~~ig~v~q~~~l~-----~~ltv~e 103 (291)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|++. +.+||++|+|.+. +.+|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999999 88654 2479999998664 67899 8
Q ss_pred HH--HHh------ccccC-CChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHH
Q psy6612 104 TF--RYY------GYMFD-MTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 104 nl--~~~------~~~~~-~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAr 154 (291)
|+ .|. +.+.+ ....+...++.++++.++|+. .++++..|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87 332 11222 122333457889999999974 57889999999999999987
No 136
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.61 E-value=1.3e-19 Score=173.75 Aligned_cols=136 Identities=19% Similarity=0.130 Sum_probs=98.6
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-------------eEE
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-------------DIG 87 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~-------------~ig 87 (291)
+++++.+.|+...+|+++ + ..+|++++|+|||||||||||++|+|+++|++|+|.+.+.++. +++
T Consensus 145 ~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g 222 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVD 222 (418)
T ss_dssp CGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGT
T ss_pred CHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccC
Confidence 344555556555677777 5 3899999999999999999999999999999999998876541 244
Q ss_pred EEc---------CCCCCC--CC----CCHHHHHHHhcc-------ccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChh
Q psy6612 88 YMP---------QELALH--GE----LSIRETFRYYGY-------MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG 145 (291)
Q Consensus 88 ~v~---------q~~~l~--~~----ltv~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG 145 (291)
+.| |+|.++ .. .|+.+++.+... ++..+. ...+ +.+..+++... ..+..||||
T Consensus 223 ~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~---~~~i-~rL~~lgl~~~-~~~~~LSgg 297 (418)
T 1p9r_A 223 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA---VGAV-TRLRDMGIEPF-LISSSLLGV 297 (418)
T ss_dssp BCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS---HHHH-HHHHHHTCCHH-HHHHHEEEE
T ss_pred cCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH---HHHH-HHHHHcCCcHH-HHHHHHHHH
Confidence 554 888652 33 588888876421 121111 1222 34666787643 367899999
Q ss_pred HHHHHHHHHHHhcCCCEEEE
Q psy6612 146 QQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 146 qkQrv~iAral~~~p~llll 165 (291)
|+|| |||+|+.+|++..-
T Consensus 298 ~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEE--EEEEECTTTCEEEE
T ss_pred HHHH--hhhhhcCCCCccCC
Confidence 9999 99999999998763
No 137
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.59 E-value=5.6e-16 Score=128.17 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=71.2
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc--EEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG--TIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
+|+++ +|+.++|+||||||||||+++|++...+ +| .+++++.++ . ..
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~-----------~-~~------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM-----------P-LT------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS-----------C-CC-------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh-----------h-HH-------------
Confidence 45555 8999999999999999999999999876 46 333332211 0 00
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCC
Q psy6612 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g 191 (291)
+++.+|++|++|||++ +|+..+..+++++..+.++|
T Consensus 79 -------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g 114 (149)
T 2kjq_A 79 -------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSG 114 (149)
T ss_dssp -------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHT
T ss_pred -------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcC
Confidence 2356899999999998 66666999999999988778
Q ss_pred cE-EEEEccC
Q psy6612 192 KT-IIITTHY 200 (291)
Q Consensus 192 ~t-ii~~tHd 200 (291)
++ +|++||.
T Consensus 115 ~~~iiits~~ 124 (149)
T 2kjq_A 115 KGFLLLGSEY 124 (149)
T ss_dssp CCEEEEEESS
T ss_pred CcEEEEECCC
Confidence 88 8888884
No 138
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.59 E-value=3.8e-19 Score=165.25 Aligned_cols=165 Identities=21% Similarity=0.184 Sum_probs=116.2
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCC-------cEEEEECCCCccHHHHHHHHHcCC----CCCccEEEECCEec------
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPEN-------KIYGLLGPSGCGKTTLLNCIVGRN----TLDAGTIKLSFRQI------ 83 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~G-------ei~~liGpNGaGKSTLl~~i~gl~----~p~~G~I~~~g~~~------ 83 (291)
+.++++..||+..+++++++.+++| +.++|+||||||||||+++|+|.+ .+++|.+..++.++
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 3455666788888999999999887 899999999999999999999998 77888887666443
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC----hHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMT----DDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral 156 (291)
..|.|++|...+.+ ++.|++......++.. .....+.+...+..+++....++++.||+|++||+.++
T Consensus 100 ~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~--- 174 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII--- 174 (334)
T ss_dssp CCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE---
T ss_pred ccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce---
Confidence 35899999877765 7888775332222211 11222344445555665445677899999999998655
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hC
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AH 208 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d 208 (291)
.+||+.+...+.++|++.++ .+ ++|+.+.+.. |+
T Consensus 175 -------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~ 210 (334)
T 1in4_A 175 -------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAK 210 (334)
T ss_dssp -------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHH
T ss_pred -------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHH
Confidence 78888899999999998864 34 3677776654 44
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=1.4e-15 Score=140.83 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=77.3
Q ss_pred EEEEECCCCccHHHHHHHHHc-CCCCCccEEEECCEec-------CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG-RNTLDAGTIKLSFRQI-------SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDD 117 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g-l~~p~~G~I~~~g~~~-------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~ 117 (291)
.+.|.||||+|||||++++++ +..|+.|.+.++|.+. ..+++++|...+....+ + .+. ...
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~ 107 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNNDRI 107 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------------CCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCcchH
Confidence 489999999999999999999 8899999999988654 24667777653311100 0 011 111
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEE
Q psy6612 118 QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197 (291)
Q Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~ 197 (291)
..++.+.++....++ +... .||| +..+|+++|+|||++ ||+.++..+++.|.+.. .+.++|++
T Consensus 108 ~~~~~i~~~~~~~~~---~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~ 170 (354)
T 1sxj_E 108 VIQELLKEVAQMEQV---DFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMV 170 (354)
T ss_dssp HHHHHHHHHTTTTC---------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEE
T ss_pred HHHHHHHHHHHhccc---cccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEE
Confidence 122222222222222 2222 5676 778999999999999 99999999999999875 46899999
Q ss_pred ccCHhHH
Q psy6612 198 THYIEEA 204 (291)
Q Consensus 198 tHd~~~~ 204 (291)
||+++.+
T Consensus 171 t~~~~~l 177 (354)
T 1sxj_E 171 CDSMSPI 177 (354)
T ss_dssp ESCSCSS
T ss_pred eCCHHHH
Confidence 9997654
No 140
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.57 E-value=4.2e-17 Score=149.25 Aligned_cols=125 Identities=15% Similarity=0.051 Sum_probs=88.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhc------cccCCCh
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG------YMFDMTD 116 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~------~~~~~~~ 116 (291)
.++.++||.||+|||||||.+.|++++.+. | ...+.+.+|+|+..+++. +.++|+.+.. ..++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~ 100 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPG 100 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccccccCCh-HHHHHHhccccccchhhhccCcc
Confidence 568899999999999999999999998763 2 113445666999988865 8888887642 1112222
Q ss_pred HHHHHHHHHHHHHcCCC------C---CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 117 DQIETRSKEILKLLELP------P---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 117 ~~~~~~~~~~l~~~~l~------~---~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
......+.+.++.+... . ...+-..+||||+||+.+|++.+.+|+|+|+||||+++|+.
T Consensus 101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 22233455556655332 1 12344689999999999984333399999999999999985
No 141
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.57 E-value=1.5e-17 Score=141.01 Aligned_cols=129 Identities=15% Similarity=0.069 Sum_probs=81.8
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECCEecC-------------eEE----EEcCCCCCCCCCCHHHHH
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQIS-------------DIG----YMPQELALHGELSIRETF 105 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~-------------~ig----~v~q~~~l~~~ltv~enl 105 (291)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++. .+| +++|++.+|-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i-------- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI-------- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--------
Confidence 589999999999999999999999998 899999987631 244 6666654430
Q ss_pred HHhccccCCChHHHHHHHHHHHHH-cCCCCCCCCc-CcCChhHHHHHHHHHHHhcCCCEE-------EEcccCC---CCC
Q psy6612 106 RYYGYMFDMTDDQIETRSKEILKL-LELPPAKKIV-GALSGGQQRRISFAVSLLHNPKLL-------ILDEPTV---GLD 173 (291)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~-~~LSgGqkQrv~iAral~~~p~ll-------llDEPts---gLD 173 (291)
.. ...+....+.++++. +. ..+..+ ..|||||+||++||||++.+|++. +-|.|.. -+|
T Consensus 75 ------~~-~~~~~~a~l~~~i~~~l~--g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~ 145 (171)
T 2f1r_A 75 ------RR-VSEEEGNDLDWIYERYLS--DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFR 145 (171)
T ss_dssp ------EE-CCHHHHTCHHHHHHHHTT--TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEEC
T ss_pred ------ec-CChhhhhCHHHHHHhhCC--CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccC
Confidence 00 011111134455554 43 222222 249999999999999999999873 2355532 234
Q ss_pred HHHHHHHHHHHHHhHhCC
Q psy6612 174 PILSQIIWDRLKEMALNG 191 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g 191 (291)
......+.++|.+...+|
T Consensus 146 ~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 146 RDEVERIAEFILSLLREG 163 (171)
T ss_dssp TTCHHHHHHHHHHHHTC-
T ss_pred cccHHHHHHHHHHHHhcc
Confidence 455677888886665554
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.55 E-value=1.5e-14 Score=137.90 Aligned_cols=130 Identities=17% Similarity=0.215 Sum_probs=77.0
Q ss_pred EEeCCcEEEEECCCCccHHHHHH--HHHcCCCCCcc-----EEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLN--CIVGRNTLDAG-----TIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~--~i~gl~~p~~G-----~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
-|++|++++|+||||||||||++ +++++.+++.| .++++++.. +... .+.......+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~---------------~~~~-rl~~~a~~~g 237 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT---------------FRPV-RLVSIAQRFG 237 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC---------------CCHH-HHHHHHHHTT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc---------------cCHH-HHHHHHHHcC
Confidence 68999999999999999999999 45677776554 555554321 0111 1110111112
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHH--HHHHHHHHH--hcCCCEEEEcccCCCCCHHHH------------
Q psy6612 114 MTDDQIETRSKEILKLLELPPAKKIVGALSGGQQ--RRISFAVSL--LHNPKLLILDEPTVGLDPILS------------ 177 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqk--Qrv~iAral--~~~p~llllDEPtsgLD~~~~------------ 177 (291)
+... .+++.+ .+.....++. +.+.-++.+ ..+|+++++|||++.+|+...
T Consensus 238 l~~~-------~vleni-------~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l 303 (400)
T 3lda_A 238 LDPD-------DALNNV-------AYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHL 303 (400)
T ss_dssp CCHH-------HHHHTE-------EEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHH
T ss_pred CChH-------hHhhcE-------EEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHH
Confidence 2111 112211 1111222333 333333333 257999999999999997543
Q ss_pred HHHHHHHHHhHh-CCcEEEEEccC
Q psy6612 178 QIIWDRLKEMAL-NGKTIIITTHY 200 (291)
Q Consensus 178 ~~i~~~l~~l~~-~g~tii~~tHd 200 (291)
..+++.|+++++ .|.|||+++|.
T Consensus 304 ~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 304 AKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEee
Confidence 667888888874 48999999998
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.55 E-value=1.2e-17 Score=158.81 Aligned_cols=160 Identities=13% Similarity=0.135 Sum_probs=118.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHc------------CCCCCccEEEECCEec-------------CeEEEEcCCCCC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVG------------RNTLDAGTIKLSFRQI-------------SDIGYMPQELAL 95 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~g------------l~~p~~G~I~~~g~~~-------------~~ig~v~q~~~l 95 (291)
.+++|..+||+|+||||||||+|+|+| .+.|+.|.+.+.|..+ ....++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 5679999999987432 123577888888
Q ss_pred CCCCCHHHHH--HHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCC--CEEEEcccCCC
Q psy6612 96 HGELSIRETF--RYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNP--KLLILDEPTVG 171 (291)
Q Consensus 96 ~~~ltv~enl--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p--~llllDEPtsg 171 (291)
+...+..+++ .|...++. ++.++..++.. .+..+..+|+++ +| +++++|||+++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~---------~d~il~Vvd~~-~d~~i~~v~~~~------------dP~~di~ildeel~~ 153 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA---------VDAIYQVVRAF-DDAEIIHVEGDV------------DPIRDLSIIVDELLI 153 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT---------CSEEEEEEECC-CTTCSSCCSSSS------------CHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH---------HHHHHHHHhcc-ccceeeeecccc------------CcchhhhhchhhhHH
Confidence 8877765544 22221111 11112222221 134555577764 99 99999999999
Q ss_pred CCHHHHHHHHHHHHHh-HhCCcEEEEEccCHhHHhh-hCeEE-EEeCC-EEEEEech
Q psy6612 172 LDPILSQIIWDRLKEM-ALNGKTIIITTHYIEEAKG-AHNIG-LMRDD-QYIGRLVH 224 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l-~~~g~tii~~tHd~~~~~~-~d~i~-~l~~G-~i~~~~~~ 224 (291)
+|+......++.+..+ .+.|.|++ +|++..+.. |+++. +|.+| +++..+..
T Consensus 154 ~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 154 KDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999999998 66677764 999999876 99998 99999 87755543
No 144
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.53 E-value=8e-18 Score=154.91 Aligned_cols=138 Identities=13% Similarity=0.106 Sum_probs=100.2
Q ss_pred cccceEEEEeEEEEECCEeeEeeeeEEE-------------------eCCcEEEEECCCCccHHHHHHHHHcCCC--CCc
Q psy6612 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNV-------------------PENKIYGLLGPSGCGKTTLLNCIVGRNT--LDA 73 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~~~L~~vsl~i-------------------~~Gei~~liGpNGaGKSTLl~~i~gl~~--p~~ 73 (291)
.++.+|+++++++.| .++++++|+.+ ++|+++||+||||||||||+++|+|++. |++
T Consensus 33 ~~~~~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 33 GINEDLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp HHCTTCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred CCccccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 345678889999999 47899999988 9999999999999999999999999988 999
Q ss_pred cEEEE---CCEec-----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChh
Q psy6612 74 GTIKL---SFRQI-----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG 145 (291)
Q Consensus 74 G~I~~---~g~~~-----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG 145 (291)
|+|.+ +|... ..+|++ |...+++.+++.+|+.+...+.... .....+....+.+
T Consensus 111 G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~-----------------~~i~~P~~~~~~~ 172 (308)
T 1sq5_A 111 RRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGV-----------------PNVTAPVYSHLIY 172 (308)
T ss_dssp CCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTC-----------------SCEEECCEETTTT
T ss_pred CeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCC-----------------Cceeccccccccc
Confidence 99999 87653 246777 8777778889999887654332110 0011122222222
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccCCCCCH
Q psy6612 146 QQRRISFAVSLLHNPKLLILDEPTVGLDP 174 (291)
Q Consensus 146 qkQrv~iAral~~~p~llllDEPtsgLD~ 174 (291)
+|+..+.+.+.+|+++|+|.|....++
T Consensus 173 --~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 173 --DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp --EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred --CcccccceecCCCCEEEECchhhCCCc
Confidence 333323344567999999999998874
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.51 E-value=1.9e-16 Score=145.33 Aligned_cols=101 Identities=22% Similarity=0.186 Sum_probs=72.2
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE---CCEec---------CeEEEEcCCCC-------------
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQI---------SDIGYMPQELA------------- 94 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~---------~~ig~v~q~~~------------- 94 (291)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++ +.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 78764 24899999985
Q ss_pred ---CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCCh
Q psy6612 95 ---LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSG 144 (291)
Q Consensus 95 ---l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSg 144 (291)
+|+.+|+ +|+.|....+ ..+...++.++++.++|+ . .++++..||+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5788888 8887653211 122345788999999996 4 5788888885
No 146
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.6e-18 Score=157.26 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=97.2
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCCC-CCCCCC
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQEL-ALHGEL 99 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~~-~l~~~l 99 (291)
+...+++++++++++| ++|+||||||||||+|+|+|...+ |.|.++|.++ +.++++||.. ..++.+
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 4456889999999999 999999999999999999999876 7899988665 2366777764 344555
Q ss_pred CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC--------
Q psy6612 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV-------- 170 (291)
Q Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts-------- 170 (291)
++.|++......++ . ... . .... .++.+.+|||||+||+.+++|+..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~----~--~~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~ 172 (274)
T 2x8a_A 107 IFFDEVDALCPRRS----D--RET----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKT 172 (274)
T ss_dssp EEEETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEE
T ss_pred EeeehhhhhhcccC----C--Ccc----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeE
Confidence 55565543221110 0 000 0 0122 35667889999999999999999999985 99964
Q ss_pred ----CCCHHHHHHHHHHH
Q psy6612 171 ----GLDPILSQIIWDRL 184 (291)
Q Consensus 171 ----gLD~~~~~~i~~~l 184 (291)
--|...+..+++.+
T Consensus 173 i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 173 LFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EECCSCCHHHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHH
Confidence 34677777766654
No 147
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.48 E-value=1.1e-16 Score=138.70 Aligned_cols=146 Identities=12% Similarity=0.117 Sum_probs=86.0
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
.++|++++|+||||||||||+++|+|+++|+ | ..+|+++++...+.. +..+++.... ..+.+......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g---------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~~~~~~~~~~ 86 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G---------LPAEVVPMDGFHLDN-RLLEPRGLLP-RKGAPETFDFE 86 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T---------CCEEEEESGGGBCCH-HHHGGGTCGG-GTTSGGGBCHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C---------CceEEEecCCCcCCH-HHHHHhcccc-cCCCCchhhHH
Confidence 5789999999999999999999999999875 3 235666665543332 2222221100 01111100011
Q ss_pred HHHHHHHHc--C--CC-C-CCCCcCcCChhHHHHHHHH-HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEE
Q psy6612 122 RSKEILKLL--E--LP-P-AKKIVGALSGGQQRRISFA-VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194 (291)
Q Consensus 122 ~~~~~l~~~--~--l~-~-~~~~~~~LSgGqkQrv~iA-ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~ti 194 (291)
.+.+.+..+ + +. . .++ ...+|+||+||+++| ++++.++.++++|||.. . .+.+.--.+
T Consensus 87 ~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~---~l~~~~d~~ 151 (208)
T 3c8u_A 87 GFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R---DLTAIWDVS 151 (208)
T ss_dssp HHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G---GGGGTCSEE
T ss_pred HHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H---HHHHhcCEE
Confidence 222223222 1 11 1 222 234799999999998 88888888888888841 1 112222368
Q ss_pred EEEccCHhHH-hh-hCeEEEEeCC
Q psy6612 195 IITTHYIEEA-KG-AHNIGLMRDD 216 (291)
Q Consensus 195 i~~tHd~~~~-~~-~d~i~~l~~G 216 (291)
++++++.+.. .+ +.|. +..|
T Consensus 152 i~vd~~~~~~~~R~~~R~--~~~g 173 (208)
T 3c8u_A 152 IRLEVPMADLEARLVQRW--LDHG 173 (208)
T ss_dssp EEECCCHHHHHHHHHHHH--HHTT
T ss_pred EEEeCCHHHHHHHHHHHH--HhcC
Confidence 8899988874 44 6652 4455
No 148
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.48 E-value=1.6e-18 Score=152.37 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=65.0
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH-cCCC------------CCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-GRNT------------LDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~-gl~~------------p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
.+..+++||++++|++++|+||||||||||+++|+ |+++ |..|++ + .++|.++++..|..
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~-----g~~~~~~~~~~~~~ 86 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--E-----GKDYYFVDREEFLR 86 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--B-----TTTBEECCHHHHHH
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--C-----CCeEEEecHHHhhh
Confidence 45689999999999999999999999999999999 9983 444433 1 23456665443333
Q ss_pred CCHHHHHHH----hccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHH-HHH-HHHhcCCCEEEEcccCCCC
Q psy6612 99 LSIRETFRY----YGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRI-SFA-VSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 99 ltv~enl~~----~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv-~iA-ral~~~p~llllDEPtsgL 172 (291)
++..+++.. ....++.+.. .+.++++.-..--.+-.+. -....+++. .-+ ..++..|+..+++|++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R 161 (231)
T 3lnc_A 87 LCSNGEIIEHAEVFGNFYGVPRK----NLEDNVDKGVSTLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGR 161 (231)
T ss_dssp HHHTTCEEEEEEETTEEEEEECT----THHHHHHHTCEEEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC----
T ss_pred hhhcCceehhhhhccccCCCCHH----HHHHHHHcCCeEEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHc
Confidence 333322221 1111222222 2233333311000111000 011123333 111 2345677888899999999
Q ss_pred CHHHHHHHHHHHHHhHh-----CCcEEEEEccCHhHH
Q psy6612 173 DPILSQIIWDRLKEMAL-----NGKTIIITTHYIEEA 204 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~-----~g~tii~~tHd~~~~ 204 (291)
|..+...+.+.|..... ....+++++|+++.+
T Consensus 162 ~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~ 198 (231)
T 3lnc_A 162 RADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEET 198 (231)
T ss_dssp ----------CHHHHHHHHTTGGGSSEEEECSSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHH
Confidence 98888887777765431 123555556665555
No 149
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.45 E-value=2.2e-18 Score=148.75 Aligned_cols=149 Identities=13% Similarity=0.128 Sum_probs=83.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCC-------------CCccEEEECCEecCeE------EEEcCCCCCCCCCCHHH
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNT-------------LDAGTIKLSFRQISDI------GYMPQELALHGELSIRE 103 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~-------------p~~G~I~~~g~~~~~i------g~v~q~~~l~~~ltv~e 103 (291)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++..+ ..+.|+..++. .++.+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~~-~~~~~ 78 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEH-AEFSG 78 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEE-EEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEee-eeecC
Confidence 5799999999999999999999999875 56665 344322100 00011111110 11111
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHH---HHHHH-HHhcCCCEEEEcccCCCCCHHHHHH
Q psy6612 104 TFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRR---ISFAV-SLLHNPKLLILDEPTVGLDPILSQI 179 (291)
Q Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQr---v~iAr-al~~~p~llllDEPtsgLD~~~~~~ 179 (291)
.+++.+.++ +.++++.-.....+..+ .|-++. -..|+ +++.+|++++|||||+++|..+...
T Consensus 79 ------n~~g~~~~~----i~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~ 144 (198)
T 1lvg_A 79 ------NLYGTSKEA----VRAVQAMNRICVLDVDL----QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEES 144 (198)
T ss_dssp ------EEEEEEHHH----HHHHHHTTCEEEEECCH----HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHH
T ss_pred ------ccCCCCHHH----HHHHHHcCCcEEEECCH----HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHH
Confidence 223333322 33333321110000000 111111 11566 7888999999999999999999999
Q ss_pred HHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 180 IWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 180 i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
+.+.|.++.++ +.++| .. ..+|+++++++
T Consensus 145 i~~~l~~~~~~----~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 145 LAKRLAAARTD----MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHH----TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHHHHH----HHHhh--cc-CCceEEEECCC
Confidence 99998887542 24456 22 45899887764
No 150
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.43 E-value=3.4e-15 Score=137.63 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=68.1
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE---CCEecC--------eEEEEcCCCCCCC----CCCHHHH
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQIS--------DIGYMPQELALHG----ELSIRET 104 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~~--------~ig~v~q~~~l~~----~ltv~en 104 (291)
+++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+ +|+... .+||++|.|.+.. .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 678899999999999999999999999999999999998 776541 1699999998765 6789 88
Q ss_pred HH--Hhc--------cccC-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHH
Q psy6612 105 FR--YYG--------YMFD-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRR 149 (291)
Q Consensus 105 l~--~~~--------~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQr 149 (291)
+. |.. .+.+ ....+...++.++++.+++.. ..+...+|+.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 83 220 0111 112223456888999999975 445566777788873
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.42 E-value=3.1e-14 Score=131.15 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=83.8
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCCh
Q psy6612 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTD 116 (291)
Q Consensus 37 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~ 116 (291)
.+++..++|++++|+|||||||||+++.|++.+.++.|+|.+.+.+..+. ...+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~-------------~a~e------------- 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA-------------AAIE------------- 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH-------------HHHH-------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH-------------HHHH-------------
Confidence 35666789999999999999999999999999999888888866543211 0111
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHH---HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH
Q psy6612 117 DQIETRSKEILKLLELPPAKKIVGALSGGQQRRI---SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188 (291)
Q Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv---~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 188 (291)
.+..+++..+++. +..+|+|+.|++ ++++|+..+|+++|+|||.. ......+++.+.++.
T Consensus 150 -----qL~~~~~~~gl~~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 150 -----QLKIWGERVGATV----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp -----HHHHHHHHHTCEE----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCcE----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 1223445556542 335789999999 99999999999999999974 344555666665553
No 152
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.41 E-value=3e-13 Score=123.94 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=93.1
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~ 122 (291)
.+|++++++|||||||||+++.|++.+.+++| .++.++.+++. ..++.+.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G---------~~V~lv~~D~~---r~~a~eqL~~~~------------- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH---------KKIAFITTDTY---RIAAVEQLKTYA------------- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC---------CCEEEEECCCS---STTHHHHHHHHH-------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---------CEEEEEecCcc---cchHHHHHHHHH-------------
Confidence 47999999999999999999999999988778 34666666652 235555554322
Q ss_pred HHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH---hCCcEEEE-Ec
Q psy6612 123 SKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA---LNGKTIII-TT 198 (291)
Q Consensus 123 ~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~---~~g~tii~-~t 198 (291)
+..+++... ..+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+. ..+.++++ +|
T Consensus 158 -----~~~gl~~~~----~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at 223 (296)
T 2px0_A 158 -----ELLQAPLEV----CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT 223 (296)
T ss_dssp -----TTTTCCCCB----CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT
T ss_pred -----HhcCCCeEe----cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 223332210 012 2334556664 4999999999 99999877666655544433 12334555 59
Q ss_pred cCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 199 HYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 199 Hd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
|..+.+.. ++++..+..+.++..
T Consensus 224 ~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 224 AKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp BCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEe
Confidence 99888865 787766676777653
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.39 E-value=7.5e-14 Score=127.82 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=92.5
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHH
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIR 102 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~ 102 (291)
+++++.|+... ++++|+ +|++++++|+|||||||+++.|++++.+..|+|.+.+.+.++.+ +.
T Consensus 80 ~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~------------~~- 142 (295)
T 1ls1_A 80 EALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA------------AR- 142 (295)
T ss_dssp HHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH------------HH-
T ss_pred HHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh------------HH-
Confidence 45666676543 788888 99999999999999999999999999998899988765542200 00
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc-CCCCCHHHHHHHH
Q psy6612 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP-TVGLDPILSQIIW 181 (291)
Q Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP-tsgLD~~~~~~i~ 181 (291)
+.+ ..+.+..+++..... ...+..+.+|.+++++...+++++|+||| ++++|......+.
T Consensus 143 ~ql------------------~~~~~~~~l~~~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~ 203 (295)
T 1ls1_A 143 EQL------------------RLLGEKVGVPVLEVM-DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203 (295)
T ss_dssp HHH------------------HHHHHHHTCCEEECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHH
T ss_pred HHH------------------HHhcccCCeEEEEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHH
Confidence 100 012233455421000 01233445789999998899999999999 9999998888888
Q ss_pred HHHHHhH
Q psy6612 182 DRLKEMA 188 (291)
Q Consensus 182 ~~l~~l~ 188 (291)
++...+.
T Consensus 204 ~~~~~~~ 210 (295)
T 1ls1_A 204 RLKEVLG 210 (295)
T ss_dssp HHHHHHC
T ss_pred HHhhhcC
Confidence 8777653
No 154
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.33 E-value=1.9e-14 Score=122.96 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=48.4
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCCCCCCCCCCHHHHHHH
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQELALHGELSIRETFRY 107 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~~~l~~~ltv~enl~~ 107 (291)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+... ..++|+||++..++.+++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 67889999999999999999999999999963 466666443 247899998877776666665543
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.33 E-value=1.6e-14 Score=141.41 Aligned_cols=162 Identities=11% Similarity=0.105 Sum_probs=104.0
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHc--CCCCCccEEEECCEecCeEEEEcCCCCCCCCC--CHHHHHHHhcccc
Q psy6612 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVG--RNTLDAGTIKLSFRQISDIGYMPQELALHGEL--SIRETFRYYGYMF 112 (291)
Q Consensus 37 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g--l~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~l--tv~enl~~~~~~~ 112 (291)
.+++++.++..+.|.|++||||||++++|.. +..++.|++.+.+.+.+... ++....+|.+ +|.++........
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e--l~~~~~lPhl~~~Vvtd~~~a~~~L 236 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE--LSVYEGIPHLLTEVVTDMKDAANAL 236 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG--GGGGTTCTTBSSSCBCSHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh--hhhhccCCcccceeecCHHHHHHHH
Confidence 4778889999999999999999999999876 56777788887666654321 1211112221 1222221111111
Q ss_pred CCChHHHHHHHHHHHHHcCCCCC---C-CCcCcCChhHHHHH----------HHHHHHhcCCC-EEEEcccCCCCCHHHH
Q psy6612 113 DMTDDQIETRSKEILKLLELPPA---K-KIVGALSGGQQRRI----------SFAVSLLHNPK-LLILDEPTVGLDPILS 177 (291)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~---~-~~~~~LSgGqkQrv----------~iAral~~~p~-llllDEPtsgLD~~~~ 177 (291)
.....+++++. +++...|+... + +....+|+||+|+. .+|+++...|. ++++||+++-+|.. .
T Consensus 237 ~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~ 314 (512)
T 2ius_A 237 RWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-G 314 (512)
T ss_dssp HHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-H
T ss_pred HHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-h
Confidence 11134555554 67888887542 2 22346899998763 35667788898 89999999988843 3
Q ss_pred HHHHHHHHHhH----hCCcEEEEEccCHh
Q psy6612 178 QIIWDRLKEMA----LNGKTIIITTHYIE 202 (291)
Q Consensus 178 ~~i~~~l~~l~----~~g~tii~~tHd~~ 202 (291)
..+.+.|.+++ +-|.++|++||+++
T Consensus 315 ~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 315 KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 45566666553 23789999999987
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.32 E-value=2.6e-13 Score=131.93 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=48.5
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 5689999999999 99999999999999999999999999999999999765
No 157
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.32 E-value=4.2e-12 Score=110.89 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=87.4
Q ss_pred eeEeee-eEEEeCCcEEEEECCCCccHHHHHH-HHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 33 VVLKGL-NLNVPENKIYGLLGPSGCGKTTLLN-CIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 33 ~~L~~v-sl~i~~Gei~~liGpNGaGKSTLl~-~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
+.|+.+ .--+++|++++|.||||||||||+. ++.+..+...+.+++++. .+..+......
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e-----------------~~~~~~~~~~~- 71 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE-----------------EHPVQVRQNMA- 71 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS-----------------SCHHHHHHHHH-
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-----------------CCHHHHHHHHH-
Confidence 345665 5678999999999999999999964 445544433333333322 12222221111
Q ss_pred ccCCChHHHHHHHHHHHH-------HcCC-CCCCCCcCcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCC--CHHHHH
Q psy6612 111 MFDMTDDQIETRSKEILK-------LLEL-PPAKKIVGALSGGQQRRISFAVSLL--HNPKLLILDEPTVGL--DPILSQ 178 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~-------~~~l-~~~~~~~~~LSgGqkQrv~iAral~--~~p~llllDEPtsgL--D~~~~~ 178 (291)
..+......... .-+. .++. ...+.....-+....+....++.++ .+|+++++|+|++.+ |+....
T Consensus 72 ~~g~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~ 149 (247)
T 2dr3_A 72 QFGWDVKPYEEK--GMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMAR 149 (247)
T ss_dssp TTTCCCHHHHHH--TSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHH
T ss_pred HcCCCHHHHhhC--CcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHH
Confidence 112211110000 0000 0010 0001111111222333333344443 589999999999988 665555
Q ss_pred HHHHHHHHhH-hCCcEEEEEccCHhH--------Hhh-hCeEEEEeC
Q psy6612 179 IIWDRLKEMA-LNGKTIIITTHYIEE--------AKG-AHNIGLMRD 215 (291)
Q Consensus 179 ~i~~~l~~l~-~~g~tii~~tHd~~~--------~~~-~d~i~~l~~ 215 (291)
+++..+.+++ +.|.||++++|.... +.. ||.++.|+.
T Consensus 150 ~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 150 SIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 6666666654 668999999998765 334 899999875
No 158
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.30 E-value=2.5e-12 Score=124.14 Aligned_cols=169 Identities=12% Similarity=0.048 Sum_probs=110.6
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh-cc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY-GY 110 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~-~~ 110 (291)
.+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| ..+.|+.-+ ++..+...-. +.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g---------~~Vl~~s~E------~s~~~l~~r~~~~ 254 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN---------ENVAIFSLE------MSAQQLVMRMLCA 254 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS---------CCEEEEESS------SCHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC---------CcEEEEECC------CCHHHHHHHHHHH
Confidence 4578888888999999999999999999999999987665444 123333322 2332222110 00
Q ss_pred cc----------CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCC----
Q psy6612 111 MF----------DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLD---- 173 (291)
Q Consensus 111 ~~----------~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD---- 173 (291)
.. .+. .+...++.++++.++... .-.....+|.++.+ +.||.++ ++|+++++|+++...+
T Consensus 255 ~~~~~~~~l~~g~l~-~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~ 331 (454)
T 2r6a_A 255 EGNINAQNLRTGKLT-PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRS 331 (454)
T ss_dssp HHTCCHHHHHTSCCC-HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC-
T ss_pred HcCCCHHHHhcCCCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCC
Confidence 00 122 223445555666554332 11224579999886 5666665 7899999999998774
Q ss_pred ----HHHHHHHHHHHHHhHh-CCcEEEEEcc---------C--Hh--------HHhh-hCeEEEEeCCEE
Q psy6612 174 ----PILSQIIWDRLKEMAL-NGKTIIITTH---------Y--IE--------EAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 174 ----~~~~~~i~~~l~~l~~-~g~tii~~tH---------d--~~--------~~~~-~d~i~~l~~G~i 218 (291)
......+.+.|+.+++ .|.+||+++| + +. .++. ||.|++|..++.
T Consensus 332 ~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 332 KENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 3344677777888874 4899999999 3 32 3444 999999987643
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.26 E-value=1.4e-15 Score=137.20 Aligned_cols=130 Identities=15% Similarity=0.224 Sum_probs=92.0
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCC
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQE 92 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~ 92 (291)
++++.+.|++..+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++ ..++++||.
T Consensus 52 l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 127 (278)
T 1iy2_A 52 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 127 (278)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHH
Confidence 345556676777899999999999 99999999999999999999875 78999887654 236677776
Q ss_pred CC-CCCCCCHHHHHHHhccccCC----ChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 93 LA-LHGELSIRETFRYYGYMFDM----TDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 93 ~~-l~~~ltv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
.. ..+.+++.|++......... ...+..+.+.++ +.+|||||+||+.+++|+..+|++ +|+
T Consensus 128 ~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l------------l~~lsgg~~~~~~i~~a~t~~p~~--ld~ 193 (278)
T 1iy2_A 128 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL------------LVEMDGFEKDTAIVVMAATNRPDI--LDP 193 (278)
T ss_dssp HHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH------------HHHHTTCCTTCCEEEEEEESCTTS--SCH
T ss_pred HHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH------------HHHHhCCCCCCCEEEEEecCCchh--CCH
Confidence 53 45566777777432221110 111122222222 356899999999999999999987 676
Q ss_pred cC
Q psy6612 168 PT 169 (291)
Q Consensus 168 Pt 169 (291)
+.
T Consensus 194 ~l 195 (278)
T 1iy2_A 194 AL 195 (278)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.25 E-value=1.2e-15 Score=135.54 Aligned_cols=131 Identities=15% Similarity=0.227 Sum_probs=91.7
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCC
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQE 92 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~ 92 (291)
++++.+.|++..+++++++++++| ++|+||||||||||+++|++... .|.+.++|.++ ..++++||.
T Consensus 28 l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 103 (254)
T 1ixz_A 28 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 103 (254)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHH
Confidence 455566676677899999999999 99999999999999999999875 78899887654 235667776
Q ss_pred CC-CCCCCCHHHHHHHhccccCC----ChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 93 LA-LHGELSIRETFRYYGYMFDM----TDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 93 ~~-l~~~ltv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
.. ..+.+++.|++......... ...+..+.+.++ ..+|||||+||+.+++|+..+|++ +|+
T Consensus 104 ~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l------------l~~l~g~~~~~~~i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 104 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL------------LVEMDGFEKDTAIVVMAATNRPDI--LDP 169 (254)
T ss_dssp HTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH------------HHHHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred HHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH------------HHHHhCCCCCCCEEEEEccCCchh--CCH
Confidence 43 44556666776432221110 111222222222 346889999999999999999987 687
Q ss_pred cCC
Q psy6612 168 PTV 170 (291)
Q Consensus 168 Pts 170 (291)
+.-
T Consensus 170 ~l~ 172 (254)
T 1ixz_A 170 ALL 172 (254)
T ss_dssp GGG
T ss_pred HHc
Confidence 654
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.24 E-value=7.3e-14 Score=139.48 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=104.8
Q ss_pred EEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc-cEEEECCEec----CeEEEEcCCC------
Q psy6612 25 AYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA-GTIKLSFRQI----SDIGYMPQEL------ 93 (291)
Q Consensus 25 l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~-G~I~~~g~~~----~~ig~v~q~~------ 93 (291)
+..-||...+++++++.+.+|+.++|+||||||||||+++|++++++.. |.+.+++.+. ..++++|+..
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e 119 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVE 119 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHH
T ss_pred cceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHH
Confidence 3444678889999999999999999999999999999999999999887 7888876654 3578887653
Q ss_pred ----------------CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCC-CCCCCCcCcCChhHHHHHHHHHHH
Q psy6612 94 ----------------ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-PPAKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 94 ----------------~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~LSgGqkQrv~iAral 156 (291)
..+..+++.+|+..... ................+.+|. .......+.+|+|++|++..++..
T Consensus 120 ~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~-~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~ 198 (604)
T 3k1j_A 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNC-GRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIH 198 (604)
T ss_dssp HHHHHHHHHTCC-----------CCCEEEECCT-TCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHH
T ss_pred HHHHhhccchhhhhhcccccccccccceeeccc-cCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceee
Confidence 11111222222210000 000000000000011223332 112233467999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
..++.+|++||... |++..+..+++.|.+-
T Consensus 199 ~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~~ 228 (604)
T 3k1j_A 199 RAHKGVLFIDEIAT-LSLKMQQSLLTAMQEK 228 (604)
T ss_dssp HTTTSEEEETTGGG-SCHHHHHHHHHHHHHS
T ss_pred ecCCCEEEEechhh-CCHHHHHHHHHHHHcC
Confidence 99999999999988 8999999999998753
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.23 E-value=2.1e-12 Score=109.67 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=76.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC-----------CccEEEECCEecCeEEEEcCCCCC--CCCCCHHHHHHHh---cc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTL-----------DAGTIKLSFRQISDIGYMPQELAL--HGELSIRETFRYY---GY 110 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p-----------~~G~I~~~g~~~~~ig~v~q~~~l--~~~ltv~enl~~~---~~ 110 (291)
.++|+|+||||||||++.++|...+ ++|+|.++|+++.- - +.+.+.. +..+. .....-. ..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~-~-i~Dt~g~~~~~~~~-~~~~~~~~~~i~ 107 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA-Q-IWDTAGLERYRAIT-SAYYRGAVGALL 107 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEE-E-EEEECSCCSSSCCC-HHHHTTCCEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEE-E-EEECCCCcchhhhh-HHHhhcCCEEEE
Confidence 6899999999999999999998765 57899999976421 1 1111111 11111 1111100 00
Q ss_pred ccCCChHHHHHHHHHHH----HHcCCC----C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHH
Q psy6612 111 MFDMTDDQIETRSKEIL----KLLELP----P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l----~~~~l~----~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~ 181 (291)
.+........+.+..++ +..... . .++ ..|..-..+.+.+|++++.+|+++++| ||++|..+..+++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~ 183 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAF 183 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHH
Confidence 11111111111111111 111100 0 011 112222234578899999999999999 9999999999999
Q ss_pred HHHHHh
Q psy6612 182 DRLKEM 187 (291)
Q Consensus 182 ~~l~~l 187 (291)
+.|.+.
T Consensus 184 ~~l~~~ 189 (191)
T 1oix_A 184 QTILTE 189 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.21 E-value=2.6e-13 Score=119.95 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=42.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
.|+++|+...|+. +|+|.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 3667777655532 566666 89999999999999999999999999999999998764
No 164
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.21 E-value=9.1e-12 Score=116.57 Aligned_cols=139 Identities=21% Similarity=0.290 Sum_probs=82.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
-+++|+++.|.||||||||||+..++.......|. +.|+.-+..+.+ . .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~----------vlyi~~E~~~~~---~--~---------------- 105 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI----------AAFIDAEHALDP---E--Y---------------- 105 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC----------EEEEESSCCCCH---H--H----------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe----------EEEEECCCCcCH---H--H----------------
Confidence 57899999999999999999987777544332332 344443322110 0 0
Q ss_pred HHHHHHHHHcCCCCCCCCc-CcCChhHHHHHHHHHHHhcC--CCEEEEcccCCCC----------CH---HHHHHHHHHH
Q psy6612 121 TRSKEILKLLELPPAKKIV-GALSGGQQRRISFAVSLLHN--PKLLILDEPTVGL----------DP---ILSQIIWDRL 184 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~~-~~LSgGqkQrv~iAral~~~--p~llllDEPtsgL----------D~---~~~~~i~~~l 184 (291)
.+.+|+...+-.+ ...+. .|-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.+
T Consensus 106 ------a~~lG~~~~~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l 177 (349)
T 2zr9_A 106 ------AKKLGVDTDSLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 177 (349)
T ss_dssp ------HHHTTCCGGGCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHH
T ss_pred ------HHHcCCCHHHeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHH
Confidence 1112222110001 11222 3456778888755 9999999999998 33 2223445555
Q ss_pred HHh----HhCCcEEEEEccCHhH----------------Hhh-hCeEEEEeCCEE
Q psy6612 185 KEM----ALNGKTIIITTHYIEE----------------AKG-AHNIGLMRDDQY 218 (291)
Q Consensus 185 ~~l----~~~g~tii~~tHd~~~----------------~~~-~d~i~~l~~G~i 218 (291)
+++ ++.|.|||+++|.... ++. ||.++.++.+++
T Consensus 178 ~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 178 RKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp HHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred HHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 555 3558999999996431 344 888888876544
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.06 E-value=2.8e-11 Score=113.88 Aligned_cols=134 Identities=18% Similarity=0.266 Sum_probs=84.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC-----------CCccEEEECCEecC---eEEEEcCCCCCCCCCCHHHH---HHHh-
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT-----------LDAGTIKLSFRQIS---DIGYMPQELALHGELSIRET---FRYY- 108 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~-----------p~~G~I~~~g~~~~---~ig~v~q~~~l~~~ltv~en---l~~~- 108 (291)
+++|+|++|||||||++.++|... |+.|.+.++|.++. ..|++.+.+. ..+... +...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~----~lve~f~~tl~~~~ 256 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPP----QIVDAFFVTLSEAK 256 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCG----GGHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCH----HHHHHHHHHHHHHH
Confidence 499999999999999999999876 67799999986541 2343333221 011111 1110
Q ss_pred -----ccccCCC--h---HHHHHHHHHHHHHcCCCC-C----CCCcCcCChhHHHHHHHH----HHH-hcCCCEEEEccc
Q psy6612 109 -----GYMFDMT--D---DQIETRSKEILKLLELPP-A----KKIVGALSGGQQRRISFA----VSL-LHNPKLLILDEP 168 (291)
Q Consensus 109 -----~~~~~~~--~---~~~~~~~~~~l~~~~l~~-~----~~~~~~LSgGqkQrv~iA----ral-~~~p~llllDEP 168 (291)
......+ . .+....+.++++.+++.. . ..++..+|+|++|++.++ +++ ..+|++ +|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~ 332 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IP 332 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EE
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EE
Confidence 0011111 1 122233456677776532 1 244677898999988887 665 444554 89
Q ss_pred CCCCCHHHHHHHHHHHHHhH
Q psy6612 169 TVGLDPILSQIIWDRLKEMA 188 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~ 188 (291)
+|++|..+...+++.|.++.
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHh
Confidence 99999999999999998865
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.01 E-value=7.9e-11 Score=100.06 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 188 (291)
...|++++.+|+++++| ||++|+.+...+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887653
No 167
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.97 E-value=1.3e-12 Score=123.44 Aligned_cols=143 Identities=16% Similarity=0.168 Sum_probs=90.8
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE-CCEecC---eEEEEcCCCC-CCCCCCHHHHHHH
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-SFRQIS---DIGYMPQELA-LHGELSIRETFRY 107 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~-~g~~~~---~ig~v~q~~~-l~~~ltv~enl~~ 107 (291)
.+++++|+++++|++++|+||||||||||+++|+|. .+|++.. ++..-+ .+|++||... ++++.+....+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~-- 231 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGE-- 231 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTT--
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHH--
Confidence 578999999999999999999999999999999985 4687765 211111 3667777653 23333321110
Q ss_pred hccccCCCh-HH--HHHHHHHHHHH---------------cCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEE-Ec
Q psy6612 108 YGYMFDMTD-DQ--IETRSKEILKL---------------LELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLI-LD 166 (291)
Q Consensus 108 ~~~~~~~~~-~~--~~~~~~~~l~~---------------~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~lll-lD 166 (291)
..+... .. ....+...++- .-+.. .+.....+++|++||+..+.+++..|++++ ||
T Consensus 232 ---~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd 308 (377)
T 1svm_A 232 ---SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLE 308 (377)
T ss_dssp ---TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred ---HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEe
Confidence 000000 00 01122333320 00111 244567799999999999888899999988 99
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhCCcEE
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALNGKTI 194 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~g~ti 194 (291)
+|+. .+++++.++|.++
T Consensus 309 ~~~~-----------~l~~RL~~Rg~t~ 325 (377)
T 1svm_A 309 RSEF-----------LLEKRIIQSGIAL 325 (377)
T ss_dssp TCTH-----------HHHTTCTTCHHHH
T ss_pred CCHH-----------HHHHHHHHcCccH
Confidence 9987 3455665555543
No 168
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.95 E-value=3.6e-10 Score=94.74 Aligned_cols=117 Identities=12% Similarity=0.115 Sum_probs=70.0
Q ss_pred EeeE--eeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE---------ECCE------ecCeEEEEcCCCC
Q psy6612 32 HVVL--KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK---------LSFR------QISDIGYMPQELA 94 (291)
Q Consensus 32 ~~~L--~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~---------~~g~------~~~~ig~v~q~~~ 94 (291)
...+ +++++++.+| +++|+||||||||||+++|++++.+..|... ..|. ....|.++||++.
T Consensus 12 f~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 12 FKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp BGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred eEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 3456 7899999999 9999999999999999999999888766432 2221 1245889999864
Q ss_pred CC--C---CCCHHHHHHHhc-cccCC-ChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHH
Q psy6612 95 LH--G---ELSIRETFRYYG-YMFDM-TDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRIS 151 (291)
Q Consensus 95 l~--~---~ltv~enl~~~~-~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~ 151 (291)
-. + .+++...+.-.. ..+.. ........+.+++..+++...+ +.-++.|+.+++.
T Consensus 91 ~~~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~--~~~~~qg~~~~l~ 152 (182)
T 3kta_A 91 RGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDG--YNIVLQGDITKFI 152 (182)
T ss_dssp CCSSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTC--TTEECTTCTTHHH
T ss_pred cccccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCC--CEEEEcccHHHHH
Confidence 21 1 122211110000 00000 0111234577788888886422 2346677766654
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.90 E-value=4.3e-11 Score=102.49 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=33.3
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
.+..+-.++.++|++++|+||||||||||+++|++.+ |.+.++|.++
T Consensus 17 ~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 17 NLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred hhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 3444445677899999999999999999999999976 8899988765
No 170
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.86 E-value=2.2e-09 Score=110.12 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=89.3
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
+..|+.+.++||+||||||++.++++...+..| .| ..+.++. |.-.....+
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g---~~ilvl~------P~r~La~q~---------------- 156 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----EN---TQVACTQ------PRRVAAMSV---------------- 156 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GT---CEEEEEE------SCHHHHHHH----------------
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CC---ceEEecC------chHHHHHHH----------------
Confidence 457899999999999999999988765544442 11 1122211 100000000
Q ss_pred HHHHHHHHcCC------------C---CCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC-CCCHHHHHHHHHHHH
Q psy6612 122 RSKEILKLLEL------------P---PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV-GLDPILSQIIWDRLK 185 (291)
Q Consensus 122 ~~~~~l~~~~l------------~---~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts-gLD~~~~~~i~~~l~ 185 (291)
+..+.+.++. + ..+..+.-+|.|+.+|..++++++.+++++|+|||.. +||......+++.+.
T Consensus 157 -~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~ 235 (773)
T 2xau_A 157 -AQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVV 235 (773)
T ss_dssp -HHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHH
Confidence 0011111111 0 1234566789999999999999999999999999997 999887777766666
Q ss_pred HhHhCCcEEEE-EccCHhHHhh-hC
Q psy6612 186 EMALNGKTIII-TTHYIEEAKG-AH 208 (291)
Q Consensus 186 ~l~~~g~tii~-~tHd~~~~~~-~d 208 (291)
.......+|++ +||+.+.+.. ++
T Consensus 236 ~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 236 KRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp HHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred HhCCCceEEEEeccccHHHHHHHhc
Confidence 65544567888 4999887754 54
No 171
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.86 E-value=1.1e-10 Score=104.52 Aligned_cols=52 Identities=21% Similarity=0.174 Sum_probs=36.5
Q ss_pred ceEEEEeE-EEEE-CCEeeEeeeeEEEeC---CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 18 HSVAVTSA-YKKI-GNHVVLKGLNLNVPE---NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 18 ~~l~~~~l-~~~~-~~~~~L~~vsl~i~~---Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+|+++|+ +++| ++.++|+++||++.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46888999 9999 778899999999999 9999999999999999999999865
No 172
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.86 E-value=1.4e-09 Score=102.03 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=31.8
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I 76 (291)
-+++|+++.|.||||||||||+..+++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 488999999999999999999999998877666654
No 173
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.84 E-value=2.2e-09 Score=100.18 Aligned_cols=123 Identities=14% Similarity=0.213 Sum_probs=80.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~ 122 (291)
..-.++++|+||+|||||++.++|.. +..|.. .+... ..++.+.++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~--~~~t~~~~~~~~~~~~~---------------------------- 214 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEIASY--PFTTRGINVGQFEDGYF---------------------------- 214 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CEEECC--TTCSSCEEEEEEEETTE----------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCC--CCeeeceeEEEEEecCc----------------------------
Confidence 34589999999999999999999865 211111 00000 01222222100
Q ss_pred HHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc-ccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEc--
Q psy6612 123 SKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD-EPTVGLDPILSQIIWDRLKEMALNGKTIIITT-- 198 (291)
Q Consensus 123 ~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD-EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~t-- 198 (291)
-+..++... .+.++.++|+|++|++. +.+...++-++++| +|.+++|......+++.+.+... +..+|++.
T Consensus 215 ---~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK 289 (357)
T 2e87_A 215 ---RYQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINK 289 (357)
T ss_dssp ---EEEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECC
T ss_pred ---eEEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 011112222 34567789999999876 66666778889999 99999999998888888877643 67788887
Q ss_pred cCHh
Q psy6612 199 HYIE 202 (291)
Q Consensus 199 Hd~~ 202 (291)
||+.
T Consensus 290 ~Dl~ 293 (357)
T 2e87_A 290 IDVA 293 (357)
T ss_dssp TTTC
T ss_pred cccC
Confidence 8874
No 174
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.81 E-value=3.4e-10 Score=96.90 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=77.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (291)
+++|+|||||||||+.++|+++ |...+++..+ ..- ...... ..+.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~---------------------~~~---~~~~~~----~~~~~i 50 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV---------------------ARE---VVAKDS----PLLSKI 50 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH---------------------HHH---TTCSSC----HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH---------------------HHH---HccCCh----HHHHHH
Confidence 6899999999999999999983 5444433211 000 000000 123455
Q ss_pred HHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH--
Q psy6612 127 LKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA-- 204 (291)
Q Consensus 127 l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~-- 204 (291)
.+.+|.... .|.|+.+|..+++.+..+|+.+..+ .+.++|..+..+.+.+... .+.++|+.+|.+.+.
T Consensus 51 ~~~~g~~~~------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~ 120 (206)
T 1jjv_A 51 VEHFGAQIL------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKL 120 (206)
T ss_dssp HHHHCTTCC------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTC
T ss_pred HHHhCHHHh------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCc
Confidence 666664322 3678999999999888888754333 4456777777766665543 256889999988765
Q ss_pred hh-hCeEEEEeC
Q psy6612 205 KG-AHNIGLMRD 215 (291)
Q Consensus 205 ~~-~d~i~~l~~ 215 (291)
.. ||.+++++-
T Consensus 121 ~~~~d~vi~l~~ 132 (206)
T 1jjv_A 121 TALCDRILVVDV 132 (206)
T ss_dssp GGGCSEEEEEEC
T ss_pred HhhCCEEEEEEC
Confidence 34 899998863
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.81 E-value=9.8e-11 Score=100.23 Aligned_cols=61 Identities=18% Similarity=0.089 Sum_probs=48.6
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE--EECCEecC
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI--KLSFRQIS 84 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I--~~~g~~~~ 84 (291)
+|+++.++...+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 567778888888899999999999999999999999999999999987 67888 88876653
No 176
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.79 E-value=3.8e-09 Score=102.66 Aligned_cols=116 Identities=24% Similarity=0.308 Sum_probs=77.0
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
...++++++.+++| +.|+||+|+|||||+++|++.... + +-++ +..+.+
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------~---f~~i----------s~~~~~------ 86 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------P---FFHI----------SGSDFV------ 86 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------C---EEEE----------EGGGTT------
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------C---eeeC----------CHHHHH------
Confidence 34566777778888 789999999999999999984310 0 1011 000000
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc----------CCCCCHHHHHHHH
Q psy6612 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP----------TVGLDPILSQIIW 181 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP----------tsgLD~~~~~~i~ 181 (291)
...++ ++++++|..+++|....|.+|++||+ ++|.|+.....+.
T Consensus 87 ------------------------~~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~ 140 (476)
T 2ce7_A 87 ------------------------ELFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLN 140 (476)
T ss_dssp ------------------------TCCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHH
T ss_pred ------------------------HHHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHH
Confidence 00011 26788899999999999999999999 4467777666666
Q ss_pred HHHHHhH----hCCcEEEEEccCHhHH
Q psy6612 182 DRLKEMA----LNGKTIIITTHYIEEA 204 (291)
Q Consensus 182 ~~l~~l~----~~g~tii~~tHd~~~~ 204 (291)
+++..+. ..+..||.+||+++.+
T Consensus 141 ~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 141 QLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHHHHhccCCCCCEEEEEecCChhhh
Confidence 7776653 2467899999998654
No 177
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.79 E-value=3.5e-10 Score=100.67 Aligned_cols=52 Identities=25% Similarity=0.332 Sum_probs=39.0
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH---cCCCCCccEEE--------ECCEec
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV---GRNTLDAGTIK--------LSFRQI 83 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~---gl~~p~~G~I~--------~~g~~~ 83 (291)
+....++++.+ ++|++++|+|||||||||++++|+ |+..|++|.+. .+|.++
T Consensus 14 ~~~~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 14 FPGRLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp ---------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred CcchhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCc
Confidence 33344555554 789999999999999999999999 99999999998 777654
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.78 E-value=1.3e-09 Score=92.31 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=25.7
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLD 72 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~ 72 (291)
|++++|+||||||||||+++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 6789999999999999999999999743
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.75 E-value=9e-11 Score=109.66 Aligned_cols=164 Identities=18% Similarity=0.202 Sum_probs=86.9
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHc--CCCCCccEEEECCEec---------CeEEEEcCCCCC-CCCC
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG--RNTLDAGTIKLSFRQI---------SDIGYMPQELAL-HGEL 99 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g--l~~p~~G~I~~~g~~~---------~~ig~v~q~~~l-~~~l 99 (291)
..+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++.....+ ...+..++.+.. +.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 468999999999 999999999999999999999 5677777665433221 123333332211 1110
Q ss_pred -CHHHHH-----HHhccccCCChHHHHHHH----HHHHHHcCCCCC-C-CCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 100 -SIRETF-----RYYGYMFDMTDDQIETRS----KEILKLLELPPA-K-KIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 100 -tv~enl-----~~~~~~~~~~~~~~~~~~----~~~l~~~~l~~~-~-~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
.+.+.+ ...+...+.+.+...-.+ ..-+..++++.. + ...++.++.++|+..++++.+.+|+++|+.-
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv 180 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence 011111 000000000000000000 000111122221 1 1123467889999999999999999888875
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCC-cEEEEEcc
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNG-KTIIITTH 199 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g-~tii~~tH 199 (291)
..+..|... ...+++++++...| .+|+++|.
T Consensus 181 ~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 181 SPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred ecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 444455443 45566777776555 57777776
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.75 E-value=1.7e-11 Score=119.77 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=86.5
Q ss_pred EEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------eEEEEcCCCC-CC
Q psy6612 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------DIGYMPQELA-LH 96 (291)
Q Consensus 27 ~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~ig~v~q~~~-l~ 96 (291)
..|.+..+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++. .+..+||... ..
T Consensus 48 ~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~ 123 (499)
T 2dhr_A 48 EFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 123 (499)
T ss_dssp HHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSS
T ss_pred HHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcC
Confidence 3344556788999999999 99999999999999999999874 788888886641 2556677653 34
Q ss_pred CCCCHHHHHHHhccccC----CChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 97 GELSIRETFRYYGYMFD----MTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
+.+.+.|++.......+ ...++..+.+.+++. +||||++|+..+++|...+|++ |||+..
T Consensus 124 p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 124 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 45555566543222111 012222333334433 4788888888899999999987 888875
No 181
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.70 E-value=4.1e-11 Score=110.92 Aligned_cols=137 Identities=11% Similarity=0.055 Sum_probs=79.8
Q ss_pred EEEECCEeeEeeeeEEEeCCc------EEEEECCCCccHHHHHHHHHcCCC--CCccEEEECCEecCeEEEEcCCCCCCC
Q psy6612 26 YKKIGNHVVLKGLNLNVPENK------IYGLLGPSGCGKTTLLNCIVGRNT--LDAGTIKLSFRQISDIGYMPQELALHG 97 (291)
Q Consensus 26 ~~~~~~~~~L~~vsl~i~~Ge------i~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~~g~~~~~ig~v~q~~~l~~ 97 (291)
+..|+++.+|++++..+.+++ ++||+||||||||||+++|++++. |+.|. ++++.++...++
T Consensus 67 ~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~----------v~~i~~D~f~~~ 136 (321)
T 3tqc_A 67 SFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN----------VEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC----------EEEEEGGGGBCC
T ss_pred HHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe----------EEEEeecccccc
Confidence 344667778888888888887 999999999999999999999987 44444 445555554333
Q ss_pred CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCH
Q psy6612 98 ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174 (291)
Q Consensus 98 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~ 174 (291)
. ...+.... ...++.+.........+.++.+.-....-..-.+|.+..+|+.-+...+..|+++|++.|..-.|+
T Consensus 137 ~-~~l~~~~~-~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 137 N-AKLEKQGL-MKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp H-HHHHHTTC-GGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred h-hhhhhHHH-HhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 2 11111100 011222221112233334433321110112223455555555433445678999999999987765
No 182
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.68 E-value=9.1e-09 Score=87.37 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=30.0
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG 74 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G 74 (291)
+++.+|++++|+|||||||||++++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
No 183
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.66 E-value=2.8e-08 Score=92.45 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=85.7
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
.+.|+.+.--+.+|+++.|.|++|+|||||+..++.......+ .+.|+.- .++..+..
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~----------~Vl~fSl------Ems~~ql~------ 90 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR----------GVAVFSL------EMSAEQLA------ 90 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC----------EEEEEES------SSCHHHHH------
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC----------eEEEEeC------CCCHHHHH------
Confidence 3456777667999999999999999999999887765432222 2344331 23443322
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hC
Q psy6612 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LN 190 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~ 190 (291)
.++......+++... .-+.||.++.+|+..|...+.+++++|.|+|... ...+...+++++ +.
T Consensus 91 ---------~Rlls~~~~v~~~~l--~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~ 154 (338)
T 4a1f_A 91 ---------LRALSDLTSINMHDL--ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQH 154 (338)
T ss_dssp ---------HHHHHHHHCCCHHHH--HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHhhCCCHHHH--hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhc
Confidence 222222221221111 1247999999999999999999999999999754 336666777775 44
Q ss_pred -CcEEEEEcc
Q psy6612 191 -GKTIIITTH 199 (291)
Q Consensus 191 -g~tii~~tH 199 (291)
|..+|++-|
T Consensus 155 gg~~lIVIDy 164 (338)
T 4a1f_A 155 KELGIAFIDY 164 (338)
T ss_dssp TTEEEEEEEE
T ss_pred CCCCEEEEec
Confidence 678888764
No 184
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.65 E-value=7.4e-08 Score=89.18 Aligned_cols=126 Identities=17% Similarity=0.081 Sum_probs=74.3
Q ss_pred CCc--EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 44 ENK--IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 44 ~Ge--i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
.+. .+.|.||+|+|||||++.+++...+..+ ..+.++.-.. ..+..+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~---------~~~~~i~~~~----~~~~~~~----------------- 90 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT---------ARFVYINGFI----YRNFTAI----------------- 90 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC---------CEEEEEETTT----CCSHHHH-----------------
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC---------eeEEEEeCcc----CCCHHHH-----------------
Confidence 456 8999999999999999999998766431 1122222111 1122221
Q ss_pred HHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHH-HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh---CCcEEEEE
Q psy6612 122 RSKEILKLLELPPAKKIVGALSGGQQRRISFAVS-LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL---NGKTIIIT 197 (291)
Q Consensus 122 ~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAra-l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~---~g~tii~~ 197 (291)
+..++..++... +....+.++......... -..+|.++++||+... |+.....+.+.+.++.. .+.++|++
T Consensus 91 -~~~l~~~l~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 91 -IGEIARSLNIPF---PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp -HHHHHHHTTCCC---CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred -HHHHHHHhCccC---CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence 112233333321 111233333222111111 1245889999999876 88888888888876654 57899999
Q ss_pred ccCHhHH
Q psy6612 198 THYIEEA 204 (291)
Q Consensus 198 tHd~~~~ 204 (291)
||+.+..
T Consensus 166 ~~~~~~~ 172 (389)
T 1fnn_A 166 GHNDAVL 172 (389)
T ss_dssp ESSTHHH
T ss_pred ECCchHH
Confidence 9988543
No 185
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.63 E-value=4.6e-09 Score=97.07 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=44.1
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
++++||++++|++++++|||||||||++..|++.+.+..|+|.+.+.++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4789999999999999999999999999999999999999999876554
No 186
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.62 E-value=7.4e-09 Score=96.65 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=33.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 81 (291)
+++.+++|+|++|||||||++.|+|.+.++.|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 357899999999999999999999988887777766544
No 187
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.53 E-value=2.4e-08 Score=84.01 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=30.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEE
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKL 78 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~ 78 (291)
.+|++++|+||||||||||+++|++..++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 36999999999999999999999998864 4555543
No 188
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=4e-08 Score=83.78 Aligned_cols=39 Identities=23% Similarity=0.135 Sum_probs=24.8
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
...+++|+||++.+|++++|+||+||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999999999999999765
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.50 E-value=1.3e-08 Score=102.66 Aligned_cols=124 Identities=11% Similarity=0.030 Sum_probs=71.3
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEECCEecC---------eEEEEcCCCCCCCCCCHHHHHHH
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL--DAGTIKLSFRQIS---------DIGYMPQELALHGELSIRETFRY 107 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~~---------~ig~v~q~~~l~~~ltv~enl~~ 107 (291)
|+++++|..++|+|+||||||||++.|++...+ ..|+| .+|..+. .+++.+|...++.. ++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~------ 74 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GH------ 74 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TE------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CE------
Confidence 467889999999999999999999999977654 56777 4443321 12222222111110 00
Q ss_pred hccccCCChHHHHHHHHHHHHHcCCCCCCCCcC-cCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 108 YGYMFDMTDDQIETRSKEILKLLELPPAKKIVG-ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
.+.+ .|.+-. .++ ......+-..+..++++| |+.|+++.++. + ++.
T Consensus 75 ---------------------~~nl--iDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~---~~~ 121 (665)
T 2dy1_A 75 ---------------------RVFL--LDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER-A---WTV 121 (665)
T ss_dssp ---------------------EEEE--EECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-H---HHH
T ss_pred ---------------------EEEE--EeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH-H---HHH
Confidence 0001 111100 111 112223335688899999 99999987763 2 333
Q ss_pred hHhCCcEEEEEccCHhH
Q psy6612 187 MALNGKTIIITTHYIEE 203 (291)
Q Consensus 187 l~~~g~tii~~tHd~~~ 203 (291)
+.+.+..+|++.|.++.
T Consensus 122 ~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 122 AERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHTTCCEEEEEECGGG
T ss_pred HHHccCCEEEEecCCch
Confidence 33457888889998775
No 190
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.48 E-value=3.7e-08 Score=86.14 Aligned_cols=42 Identities=24% Similarity=0.135 Sum_probs=36.1
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 38 vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
-+.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 4456689999999999999999999999998 78888877653
No 191
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.46 E-value=4.7e-07 Score=86.85 Aligned_cols=38 Identities=24% Similarity=0.098 Sum_probs=32.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 81 (291)
++.+++++|||||||||++..|++.+.+..++|.+-+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 58899999999999999999999999887777766443
No 192
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.41 E-value=3.9e-08 Score=84.14 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=36.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ 82 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 82 (291)
..++|++++|+|+||||||||+++|++.+++..|.|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 357899999999999999999999999998888888775544
No 193
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.36 E-value=1.3e-07 Score=81.57 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=26.9
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
|+...+|++++|+||||||||||++.|++..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44556899999999999999999999999875
No 194
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.35 E-value=1e-07 Score=79.00 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=31.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
.+|++++|+|||||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 469999999999999999999999874 7777776543
No 195
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.34 E-value=2.3e-07 Score=79.80 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=27.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 196
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.34 E-value=6.7e-08 Score=95.46 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=38.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc-EEE-ECCEec
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG-TIK-LSFRQI 83 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~-~~g~~~ 83 (291)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 775 787654
No 197
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.34 E-value=7.1e-07 Score=81.87 Aligned_cols=133 Identities=13% Similarity=0.163 Sum_probs=84.4
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
.+.|+.+.--+.+|+++.|.|++|+|||||+..++....- .| ..+.|+.-+ ++..+..
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g---------~~vl~~slE------~s~~~l~------ 112 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND---------DVVNLHSLE------MGKKENI------ 112 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT---------CEEEEEESS------SCHHHHH------
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC---------CeEEEEECC------CCHHHHH------
Confidence 4467777767999999999999999999998777643211 12 234444322 3443322
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-C
Q psy6612 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-N 190 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~ 190 (291)
.++......+.+......-..||.++++|+..|...+.++++++.|+|... ...+...++++.+ .
T Consensus 113 ---------~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~ 178 (315)
T 3bh0_A 113 ---------KRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKN 178 (315)
T ss_dssp ---------HHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTS
T ss_pred ---------HHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhc
Confidence 222211111111111111123999999999999999999999999998643 3456666777764 3
Q ss_pred CcE--EEEEccC
Q psy6612 191 GKT--IIITTHY 200 (291)
Q Consensus 191 g~t--ii~~tHd 200 (291)
|.. +|++-|-
T Consensus 179 ~~~~~lVVID~l 190 (315)
T 3bh0_A 179 PGKRVIVMIDYL 190 (315)
T ss_dssp SSCCEEEEEECG
T ss_pred CCCCeEEEEeCc
Confidence 666 8887763
No 198
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.34 E-value=6.3e-08 Score=92.77 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=86.6
Q ss_pred eEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCC-CHH
Q psy6612 24 SAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGEL-SIR 102 (291)
Q Consensus 24 ~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~l-tv~ 102 (291)
++++.|+... ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.+..+.+...| + +..
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~q-------L~~~~ 149 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ-------LRLLG 149 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHH-------HHHHH
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHH-------HHHhc
Confidence 4555666544 678888 899999999999999999999999999988888886655422111000 0 000
Q ss_pred HHHHHh--ccccCCChHHHHHHHHHHHHHc---CCCC--CCCCcCc--CChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 103 ETFRYY--GYMFDMTDDQIETRSKEILKLL---ELPP--AKKIVGA--LSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 103 enl~~~--~~~~~~~~~~~~~~~~~~l~~~---~l~~--~~~~~~~--LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
+...+. ....+....+. +.++++.+ +.+. .|.++.. -+.-+.+...+++++..++-++++| ++++.|
T Consensus 150 ~~~gv~v~~~~~~~~p~~i---~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~ 225 (425)
T 2ffh_A 150 EKVGVPVLEVMDGESPESI---RRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQE 225 (425)
T ss_dssp HHHTCCEEECCTTCCHHHH---HHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTH
T ss_pred ccCCccEEecCCCCCHHHH---HHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHH
Confidence 111000 00001111121 12233322 2221 3444321 2345777778888887777788888 566655
Q ss_pred HHHHHHHHHHHHHhH-hCCcEEEEEcc
Q psy6612 174 PILSQIIWDRLKEMA-LNGKTIIITTH 199 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~-~~g~tii~~tH 199 (291)
... .++.+. .-+.+-++.|+
T Consensus 226 av~------~a~~f~~~l~i~GVIlTK 246 (425)
T 2ffh_A 226 ALS------VARAFDEKVGVTGLVLTK 246 (425)
T ss_dssp HHH------HHHHHHHHTCCCEEEEES
T ss_pred HHH------HHHHHHhcCCceEEEEeC
Confidence 442 233333 23555566666
No 199
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.34 E-value=6.4e-07 Score=85.95 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=37.1
Q ss_pred cCCCEEEEcccCCCCCH-HHHHHHHHHHHHhHhCCcEEEEEccC
Q psy6612 158 HNPKLLILDEPTVGLDP-ILSQIIWDRLKEMALNGKTIIITTHY 200 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~-~~~~~i~~~l~~l~~~g~tii~~tHd 200 (291)
.+|++|++||+..-.+. ..+..++..+..+.+.|+.||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999876654 67888999999988778999999997
No 200
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.32 E-value=2.4e-07 Score=85.27 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=26.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~ 72 (291)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877553
No 201
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.31 E-value=3.3e-06 Score=75.73 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=71.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHH
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~ 123 (291)
++..+.|.||+|+|||||++++++.... + +-.+.- ..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~----------~---~~~i~~-~~l---------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA----------T---FLNISA-ASL---------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC----------E---EEEEES-TTT----------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC----------C---eEEeeH-HHH----------------------------
Confidence 5678999999999999999999985421 0 000000 000
Q ss_pred HHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCH----------HHHHHHHHHHHHhHh----
Q psy6612 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP----------ILSQIIWDRLKEMAL---- 189 (291)
Q Consensus 124 ~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~----------~~~~~i~~~l~~l~~---- 189 (291)
....+ -+++++.|..++.+...+|.+|++||+.+-++. .....++..+..+..
T Consensus 91 -----------~~~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 91 -----------TSKYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -----------SSSSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -----------hhccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00111 135777888888888899999999999876553 233345555554421
Q ss_pred CCcEEEEEccCHhHH-----hhhCeEEEEe
Q psy6612 190 NGKTIIITTHYIEEA-----KGAHNIGLMR 214 (291)
Q Consensus 190 ~g~tii~~tHd~~~~-----~~~d~i~~l~ 214 (291)
.+..||.+|++++.+ .++++.+.+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVS 187 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECC
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeC
Confidence 235677788875432 2467665553
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.29 E-value=3.4e-09 Score=98.47 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=51.3
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ 82 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 82 (291)
.++..+.|+...+++++++.+.+|.+++|+|+||||||||++.|++.+.+..|+|.+-+.+
T Consensus 33 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 33 SRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp CCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 3555566666778999999999999999999999999999999999988877877764443
No 203
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.26 E-value=2e-06 Score=79.11 Aligned_cols=138 Identities=16% Similarity=0.194 Sum_probs=75.9
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcC-CCCC-ccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGR-NTLD-AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ 118 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl-~~p~-~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 118 (291)
-+++|+++.|.||+|||||||+..++.. ..|. .| |.. ..+.|+.-+..+ +......+. ...+...+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~~-~~vlyi~~e~~~----~~~~l~~~~-~~~g~~~~- 170 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GLS-GKAVYIDTEGTF----RWERIENMA-KALGLDID- 170 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CCS-CEEEEEESSSCC----CHHHHHHHH-HHTTCCHH-
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CCC-CeEEEEECCCCC----CHHHHHHHH-HHhCCCHH-
Confidence 5889999999999999999999887754 2331 11 100 234454433321 122211111 11222221
Q ss_pred HHHHHHHHHHHcCCCCCCCCcCcCChh-HHHHHHHHHHHh---cCCCEEEEcccCCCCCH--------HH----HHHHHH
Q psy6612 119 IETRSKEILKLLELPPAKKIVGALSGG-QQRRISFAVSLL---HNPKLLILDEPTVGLDP--------IL----SQIIWD 182 (291)
Q Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~LSgG-qkQrv~iAral~---~~p~llllDEPtsgLD~--------~~----~~~i~~ 182 (291)
++++.+-+ ....+.. +.+.+..++.++ .+|+++++|+.++-... .. ..+++.
T Consensus 171 ------~~~~~l~~------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~ 238 (324)
T 2z43_A 171 ------NVMNNIYY------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLH 238 (324)
T ss_dssp ------HHHHTEEE------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHH
T ss_pred ------HHhccEEE------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHH
Confidence 12221111 1112333 335677777777 67999999999876532 11 244555
Q ss_pred HHHHhH-hCCcEEEEEccCHh
Q psy6612 183 RLKEMA-LNGKTIIITTHYIE 202 (291)
Q Consensus 183 ~l~~l~-~~g~tii~~tHd~~ 202 (291)
.|++++ +.+.+||+++|-..
T Consensus 239 ~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 239 QLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHhCCEEEEEcceee
Confidence 556655 34889999988653
No 204
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.25 E-value=4.6e-06 Score=77.37 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=76.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGR--NTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ 118 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 118 (291)
-+++|+++.|.||+|||||||+..++.. .++..| |.. ..+.|+.-+..+ .......+. ...+...+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g~~-~~vlyi~~E~~~----~~~~l~~~~-~~~g~~~~- 185 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----YPG-GKIIFIDTENTF----RPDRLRDIA-DRFNVDHD- 185 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----BCC-CEEEEEESSSCC----CHHHHHHHH-HHTTCCHH-
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----CCC-CeEEEEECCCCC----CHHHHHHHH-HHcCCCHH-
Confidence 4789999999999999999999888874 332211 110 234555444322 222211111 11222221
Q ss_pred HHHHHHHHHHHcCCCCCCCCcCcCChhH-HHHHHHHHHHh----cCCCEEEEcccCCCCCHH------------HHHHHH
Q psy6612 119 IETRSKEILKLLELPPAKKIVGALSGGQ-QRRISFAVSLL----HNPKLLILDEPTVGLDPI------------LSQIIW 181 (291)
Q Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~LSgGq-kQrv~iAral~----~~p~llllDEPtsgLD~~------------~~~~i~ 181 (291)
++++.+-+ ....+..+ .+.+..++.++ .+++++++|+.++-.... ...+++
T Consensus 186 ------~~l~~l~~------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l 253 (343)
T 1v5w_A 186 ------AVLDNVLY------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQML 253 (343)
T ss_dssp ------HHHHTEEE------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHH
T ss_pred ------HHHhceeE------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHH
Confidence 12332211 11123332 24455556665 679999999999876442 134555
Q ss_pred HHHHHhH-hCCcEEEEEccCHhH
Q psy6612 182 DRLKEMA-LNGKTIIITTHYIEE 203 (291)
Q Consensus 182 ~~l~~l~-~~g~tii~~tHd~~~ 203 (291)
..|+.++ +.+.+||+++|....
T Consensus 254 ~~L~~la~~~~~~Vi~~nq~~~~ 276 (343)
T 1v5w_A 254 SRLQKISEEYNVAVFVTNQMTAD 276 (343)
T ss_dssp HHHHHHHHHHTCEEEEEECC---
T ss_pred HHHHHHHHHhCCEEEEEeeceec
Confidence 5566665 348899999996543
No 205
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.25 E-value=4.4e-07 Score=77.41 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=37.3
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCC
Q psy6612 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHG 97 (291)
Q Consensus 38 vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~ 97 (291)
+-=++++|++++|+|++||||||+.+.|++.++ .+.+++|+..+++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~--------------~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP--------------NCSVISQDDFFKP 59 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST--------------TEEEEEGGGGBCC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC--------------CcEEEeCCccccC
Confidence 334678899999999999999999999999864 2677777766554
No 206
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.22 E-value=1.4e-05 Score=69.65 Aligned_cols=42 Identities=21% Similarity=0.121 Sum_probs=30.3
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh--CCcEEEEEcc
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMAL--NGKTIIITTH 199 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~--~g~tii~~tH 199 (291)
.+|+++|+..+.+.++......+..++..+.. ...++|+.||
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999999988766666555544432 1258888888
No 207
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.19 E-value=2.6e-06 Score=77.54 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=41.2
Q ss_pred CChhHHHHHHHHHHHh--cCCCEEEEcccCCCCCHHH-HHHHHHHHHHhHhC-Cc--EEEEEccCHhHH
Q psy6612 142 LSGGQQRRISFAVSLL--HNPKLLILDEPTVGLDPIL-SQIIWDRLKEMALN-GK--TIIITTHYIEEA 204 (291)
Q Consensus 142 LSgGqkQrv~iAral~--~~p~llllDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tii~~tHd~~~~ 204 (291)
+|.|++ .+++++. ..|.++++ +.+|... +..+.+.+.++++. +. .+.+++|+-+.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 888886 5566666 68889998 8999877 67788888888753 43 566677765444
No 208
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.13 E-value=8.2e-07 Score=73.18 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=25.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
.|++++|+|||||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999998754
No 209
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.12 E-value=1.4e-06 Score=71.25 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=25.7
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 36 ~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666665 999999999999999999873
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.12 E-value=1.8e-06 Score=88.88 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=29.0
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
|.+++|+.+.|+||||||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998743
No 211
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.06 E-value=6.1e-06 Score=74.84 Aligned_cols=30 Identities=33% Similarity=0.563 Sum_probs=27.1
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.+.++..+.|.||+|+|||||+++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999999999875
No 212
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.05 E-value=4.4e-07 Score=89.42 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=48.5
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 81 (291)
+++.+.|+...+++++++++ +|++++|+||||||||||+++|++.+.+..|+|.+.|.
T Consensus 87 ~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 87 EKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 44455555556788888888 89999999999999999999999999988898887763
No 213
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.03 E-value=1.1e-05 Score=73.55 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=32.3
Q ss_pred cCCCEEEEcccCC-CCCHHHHHHHHHHHHHhHhCCcEEEEEcc
Q psy6612 158 HNPKLLILDEPTV-GLDPILSQIIWDRLKEMALNGKTIIITTH 199 (291)
Q Consensus 158 ~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~tH 199 (291)
.+|++|++||+-. .-+...+..+...+..+.+.+..+|++++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4699999999855 33457888899999888777776777665
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.01 E-value=1.3e-06 Score=72.84 Aligned_cols=40 Identities=28% Similarity=0.179 Sum_probs=32.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCcc--EEEECCEec
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG--TIKLSFRQI 83 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~~ 83 (291)
.+|++++|+|++||||||+.++|++.+++ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998766 56 565655443
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.99 E-value=2.5e-06 Score=74.76 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=31.2
Q ss_pred eEeeeeEEEe---CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE
Q psy6612 34 VLKGLNLNVP---ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77 (291)
Q Consensus 34 ~L~~vsl~i~---~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~ 77 (291)
-|.++||++. +|.+++|.||+||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 4788888887 9999999999999999999999999877 55553
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.98 E-value=5.2e-06 Score=70.22 Aligned_cols=26 Identities=38% Similarity=0.342 Sum_probs=23.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
..+.|.||+|+|||||+++|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999987644
No 217
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.97 E-value=6.4e-06 Score=78.77 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=79.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC------------CCccEEEECCEec---------CeEEEEcCCCCCCCCCCHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT------------LDAGTIKLSFRQI---------SDIGYMPQELALHGELSIRETF 105 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~------------p~~G~I~~~g~~~---------~~ig~v~q~~~l~~~ltv~enl 105 (291)
.++|+|+||||||||++.|+|... +.+|.+.++|.++ +..++.+|....|..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999864 6789999999754 1123333444444444455555
Q ss_pred HHhcc------c-cCCChHHHHHHHHHHHHHcCCC------CCCCCc-CcCChhHHHHHHHHHHHh--cCCCEEEEcccC
Q psy6612 106 RYYGY------M-FDMTDDQIETRSKEILKLLELP------PAKKIV-GALSGGQQRRISFAVSLL--HNPKLLILDEPT 169 (291)
Q Consensus 106 ~~~~~------~-~~~~~~~~~~~~~~~l~~~~l~------~~~~~~-~~LSgGqkQrv~iAral~--~~p~llllDEPt 169 (291)
..... . .+... ....+.+.+...+.. ..|..- .+-+.-+- .-.+++.+. ...+++ ++
T Consensus 262 ~~ad~vllv~d~~~~~~~--~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~ 334 (439)
T 1mky_A 262 EKADVVVIVLDATQGITR--QDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPLI----FT 334 (439)
T ss_dssp HHCSEEEEEEETTTCCCH--HHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHH-HHHHHHHCGGGTTSCEE----EC
T ss_pred hhCCEEEEEEeCCCCCCH--HHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHH-HHHHHHHhccCCCCcEE----EE
Confidence 43210 0 11222 223444555555532 111110 01111111 113444443 334443 58
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
|++.-....++++.+.+..++ .+.-+.|+.++.+
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~-~~~~i~t~~ln~~ 368 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYAS-YTTKVPSSAINSA 368 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH-HTCCCCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh-hcccCCHHHHHHH
Confidence 999988888888888776532 1223467776654
No 218
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.97 E-value=8.7e-07 Score=76.28 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=29.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC---CCCccEEEE
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN---TLDAGTIKL 78 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~---~p~~G~I~~ 78 (291)
+.+++|+||+||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 677888876
No 219
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.89 E-value=6.4e-06 Score=70.70 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=25.5
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 36 ~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3456677665 999999999999999998863
No 220
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.89 E-value=8.6e-05 Score=71.02 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=81.8
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcccc
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMF 112 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~ 112 (291)
+.|+.+.--+.+|+++.|.|++|+|||||+..++.......| ..+.|+.-+ ++..+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g---------~~vl~~slE------~~~~~l-------- 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG---------VGVGIYSLE------MPAAQL-------- 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC---------CCEEEEESS------SCHHHH--------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------CeEEEEECC------CCHHHH--------
Confidence 456666656999999999999999999999877765432222 123333221 233221
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCC
Q psy6612 113 DMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNG 191 (291)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g 191 (291)
..++. ....+++..+-.-+.||..+.+|+.-|...+.+.++++.|+|.. ++ ..+...++++. +.+
T Consensus 245 -------~~R~~--~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~---~~l~~~~~~l~~~~~ 310 (444)
T 2q6t_A 245 -------TLRMM--CSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL---MEVRARARRLVSQNQ 310 (444)
T ss_dssp -------HHHHH--HHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH---HHHHHHHHHHHHHSC
T ss_pred -------HHHHH--HHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH---HHHHHHHHHHHHHcC
Confidence 12211 12234432221235799999999998888888888999998743 33 34556666665 356
Q ss_pred cEEEEEcc
Q psy6612 192 KTIIITTH 199 (291)
Q Consensus 192 ~tii~~tH 199 (291)
..+|++-+
T Consensus 311 ~~lIvID~ 318 (444)
T 2q6t_A 311 VGLIIIDY 318 (444)
T ss_dssp CCEEEEEC
T ss_pred CCEEEEcC
Confidence 77777755
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.87 E-value=2.2e-06 Score=73.48 Aligned_cols=43 Identities=23% Similarity=0.139 Sum_probs=36.9
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc--EEEECCEe
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG--TIKLSFRQ 82 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~ 82 (291)
+.+++|.+++|+|++||||||+.+.|++.+.|..| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 44678999999999999999999999999887788 77776544
No 222
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=2e-07 Score=85.40 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=33.8
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
++.++++|| ...|++..+..+.+.+.+... ...+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhhC
Confidence 667999999 788999999889888887643 34566777766543
No 223
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.84 E-value=8.3e-05 Score=69.42 Aligned_cols=122 Identities=15% Similarity=0.264 Sum_probs=67.3
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
+++|+++.|.||+|+|||||...++.......+ .+.|+.-+..+.+ . .
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~----------~vlyid~E~s~~~---~--~----------------- 107 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----------TCAFIDAEHALDP---I--Y----------------- 107 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC----------CEEEEESSCCCCH---H--H-----------------
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEeCCCCccH---H--H-----------------
Confidence 889999999999999999999777654322111 2444443322110 0 0
Q ss_pred HHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCCHH-------------HHHHHHHHHHH
Q psy6612 122 RSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLDPI-------------LSQIIWDRLKE 186 (291)
Q Consensus 122 ~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD~~-------------~~~~i~~~l~~ 186 (291)
+..++.+..+-.+.+-+.+ .|-..+++.++ .+++++++|.+++-.... ..+.+.+.+++
T Consensus 108 -----a~~~g~~~~~l~i~~~~~~-e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~ 181 (356)
T 1u94_A 108 -----ARKLGVDIDNLLCSQPDTG-EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 181 (356)
T ss_dssp -----HHHTTCCGGGCEEECCSSH-HHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHH
T ss_pred -----HHHcCCChhheeeeCCCCH-HHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHH
Confidence 0111221100001111112 34456666664 689999999999876321 11234445544
Q ss_pred h---H-hCCcEEEEEccCH
Q psy6612 187 M---A-LNGKTIIITTHYI 201 (291)
Q Consensus 187 l---~-~~g~tii~~tHd~ 201 (291)
| + +.+.+||+++|-.
T Consensus 182 L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 182 LAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHHHTCEEEEEEC--
T ss_pred HHHHHHHhCCEEEEEeccc
Confidence 4 3 4589999998853
No 224
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.82 E-value=2.5e-05 Score=67.97 Aligned_cols=141 Identities=12% Similarity=0.108 Sum_probs=72.6
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
+.+|+.+++.||+||||||++.++........|. -..++.+++.|......++.+++.... +..-
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-------~~~~~~l~~~p~~~la~q~~~~~~~~~---~~~~----- 137 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-------AAECNIVVTQPRRISAVSVAERVAFER---GEEP----- 137 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-------GGGCEEEEEESSHHHHHHHHHHHHHTT---TCCT-----
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-------CCceEEEEeccchHHHHHHHHHHHHHh---cccc-----
Confidence 4579999999999999999887765321111111 123455666554333334445543211 0000
Q ss_pred HHHHHHHHcCC--CC------CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC-CCCHHHHHHHHHHHHHhHhCCc
Q psy6612 122 RSKEILKLLEL--PP------AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV-GLDPILSQIIWDRLKEMALNGK 192 (291)
Q Consensus 122 ~~~~~l~~~~l--~~------~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~g~ 192 (291)
-..+|. .. .+..+--.+.|+-.+.. ...+.+.+++++||.-. ++|.......++.+.....+-.
T Consensus 138 -----~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~ 210 (235)
T 3llm_A 138 -----GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVR 210 (235)
T ss_dssp -----TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSE
T ss_pred -----CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCe
Confidence 000010 00 00112224556665553 34688999999999976 6776665444444443332223
Q ss_pred EEEE-EccCHhHH
Q psy6612 193 TIII-TTHYIEEA 204 (291)
Q Consensus 193 tii~-~tHd~~~~ 204 (291)
++++ .|.+.+.+
T Consensus 211 ~il~SAT~~~~~~ 223 (235)
T 3llm_A 211 IVLMSATIDTSMF 223 (235)
T ss_dssp EEEEECSSCCHHH
T ss_pred EEEEecCCCHHHH
Confidence 5555 34444443
No 225
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.81 E-value=9.1e-07 Score=82.79 Aligned_cols=56 Identities=25% Similarity=0.374 Sum_probs=38.2
Q ss_pred cccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q psy6612 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I 76 (291)
+....+.+.++.+.|+++.++++++|+| +|+|++|+|||||++.|.|...+..|.+
T Consensus 13 ~~~~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 13 ETPGYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp --------CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred CCCceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 3345677788888888888999999987 9999999999999999998766555544
No 226
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.79 E-value=6.2e-06 Score=70.68 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987654
No 227
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.77 E-value=1.8e-05 Score=66.22 Aligned_cols=34 Identities=35% Similarity=0.365 Sum_probs=20.4
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.+++++|+..++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4789999998888 568999999999999999997
No 228
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.77 E-value=2.1e-05 Score=73.55 Aligned_cols=31 Identities=16% Similarity=0.482 Sum_probs=27.6
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHH
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~ 66 (291)
+++..+++.+| +++|+|||||||||++.+|+
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888886 99999999999999999886
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.77 E-value=2e-06 Score=78.45 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=44.6
Q ss_pred eEEEEECCEeeEee-eeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q psy6612 24 SAYKKIGNHVVLKG-LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ 82 (291)
Q Consensus 24 ~l~~~~~~~~~L~~-vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 82 (291)
++.+.|++.. ++ ++|+.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.+
T Consensus 79 ~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 79 ELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4445565543 56 888876 99999999999999999999999998877788775544
No 230
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.76 E-value=2.2e-05 Score=64.71 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=23.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
No 231
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.72 E-value=5.2e-06 Score=70.17 Aligned_cols=39 Identities=33% Similarity=0.355 Sum_probs=31.1
Q ss_pred EECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 28 KIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 28 ~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.|++ ..+++++|+..++++ ++++|++|||||||++.+.+
T Consensus 8 ~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 8 IYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -----CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 3444 368899999988885 68999999999999999987
No 232
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.70 E-value=1e-05 Score=67.57 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=32.0
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~ 77 (291)
+...+|.+++|+|++||||||+.+.|++.+.+..|.+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 34468999999999999999999999998877666653
No 233
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=1.8e-06 Score=79.46 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=41.9
Q ss_pred EECCEeeEeeeeEEEeCCcE--EEEECCCCccHHHHHHHHHcCCCCCccE
Q psy6612 28 KIGNHVVLKGLNLNVPENKI--YGLLGPSGCGKTTLLNCIVGRNTLDAGT 75 (291)
Q Consensus 28 ~~~~~~~L~~vsl~i~~Gei--~~liGpNGaGKSTLl~~i~gl~~p~~G~ 75 (291)
.||...+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 45777889999999999999 9999999999999999999987665543
No 234
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.63 E-value=4.4e-06 Score=78.99 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=46.1
Q ss_pred cceEEEEeEEEEECC-EeeEe--------------eeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLK--------------GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~--------------~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+..+.++|+++.|.. +..|+ |+++.+.+|+..+|+||+|||||||++.|++.+
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 344667888888864 56888 899999999999999999999999999999875
No 235
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.62 E-value=6.4e-05 Score=61.17 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999654
No 236
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.62 E-value=2.4e-05 Score=65.59 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=26.6
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 37 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
No 237
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.61 E-value=2.3e-05 Score=66.28 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 238
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.60 E-value=4.1e-05 Score=63.17 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 239
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.60 E-value=0.00014 Score=64.48 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=24.6
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.++.-+.|.||.|+|||||+++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999999865
No 240
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.57 E-value=0.00014 Score=66.20 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.5
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987764
No 241
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.57 E-value=3.6e-05 Score=72.94 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=34.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcC-----------CCCCccEEEECCE
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGR-----------NTLDAGTIKLSFR 81 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl-----------~~p~~G~I~~~g~ 81 (291)
.+..|..++|+|+||+|||||+++|+|. +.|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999998 6788898888764
No 242
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.56 E-value=3.2e-05 Score=65.76 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=26.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
...+|.+++|+||+||||||+.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998763
No 243
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.53 E-value=5e-05 Score=69.66 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999997653
No 244
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.51 E-value=0.00021 Score=60.28 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=32.7
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.+|.++++||.-. +|+.....+.+.+.+. ..+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHhC
Confidence 3578999999755 7888777777766543 2356788888876654
No 245
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.48 E-value=1e-05 Score=83.24 Aligned_cols=31 Identities=32% Similarity=0.553 Sum_probs=28.6
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++.+.+++.+.|.||+|||||||.++|++..
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 6677899999999999999999999999876
No 246
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.41 E-value=7e-05 Score=62.08 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLD 72 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~ 72 (291)
.++|+|++|||||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 47899999999999999999975443
No 247
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.38 E-value=0.00095 Score=62.45 Aligned_cols=123 Identities=18% Similarity=0.313 Sum_probs=67.9
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
-+++|+++.|.||.|+|||||...++.-.... | ..+.|+.-+..+.+ . .
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~-------g---~~vlyi~~E~s~~~---~---~--------------- 118 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA-------G---GTCAFIDAEHALDP---V---Y--------------- 118 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-------T---CCEEEEESSCCCCH---H---H---------------
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-------C---CeEEEEECCCChhH---H---H---------------
Confidence 47899999999999999999986665432111 1 12455544432111 0 0
Q ss_pred HHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCC---H----------HHHHHHHHHHH
Q psy6612 121 TRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLD---P----------ILSQIIWDRLK 185 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD---~----------~~~~~i~~~l~ 185 (291)
++.++++..+-.+..-..+ .|-+.+++.++ .+++++++|..++-.- . ...+.+.+.++
T Consensus 119 ------a~~~g~d~~~l~i~~~~~~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr 191 (366)
T 1xp8_A 119 ------ARALGVNTDELLVSQPDNG-EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALR 191 (366)
T ss_dssp ------HHHTTCCGGGCEEECCSSH-HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHH
T ss_pred ------HHHcCCCHHHceeecCCcH-HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHH
Confidence 1122222100001110112 34456666665 5699999999886541 0 11234556666
Q ss_pred Hh---H-hCCcEEEEEccCH
Q psy6612 186 EM---A-LNGKTIIITTHYI 201 (291)
Q Consensus 186 ~l---~-~~g~tii~~tHd~ 201 (291)
+| + +.+.+||+++|-.
T Consensus 192 ~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 192 KLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHHHHHcCCEEEEEEecc
Confidence 65 3 4588999888853
No 248
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.38 E-value=0.0011 Score=64.29 Aligned_cols=148 Identities=15% Similarity=0.130 Sum_probs=73.3
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHH-HhccccC
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFR-YYGYMFD 113 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~-~~~~~~~ 113 (291)
|+.+---+.+|+++.|.|++|+|||||+--++--.....| ..+.|+.-+ ++..+.+. +.....+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g---------~~vl~~s~E------~s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG---------KKVGLAMLE------ESVEETAEDLIGLHNR 296 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC---------CCEEEEESS------SCHHHHHHHHHHHHTT
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcC---------CcEEEEecc------CCHHHHHHHHHHHHcC
Confidence 4444335899999999999999999998655533222112 123444322 34444332 1111111
Q ss_pred CChHH---H------HHHHHHHHHHc-CCCC--CCCCcCcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCC------
Q psy6612 114 MTDDQ---I------ETRSKEILKLL-ELPP--AKKIVGALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLD------ 173 (291)
Q Consensus 114 ~~~~~---~------~~~~~~~l~~~-~l~~--~~~~~~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD------ 173 (291)
.+... . .+....+.+.+ .-.. ....+..++- .+.+..++.++ .+|+++++| +...+.
T Consensus 297 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~--~~i~~~i~~~~~~~~~~lvVID-~l~~l~~~~~~~ 373 (503)
T 1q57_A 297 VRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAET--DRLLAKLAYMRSGLGCDVIILD-HISIVVSASGES 373 (503)
T ss_dssp SCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CH--HHHHHHHHHHHHTTCCSEEEEE-CTTCCCSCCSCC
T ss_pred CChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCH--HHHHHHHHHHHHhcCCCEEEEc-cchhcCCCCCCC
Confidence 11000 0 00111122222 1111 1112222333 34444555553 479999999 444332
Q ss_pred --HHHHHHHHHHHHHhHh-CCcEEEEEccC
Q psy6612 174 --PILSQIIWDRLKEMAL-NGKTIIITTHY 200 (291)
Q Consensus 174 --~~~~~~i~~~l~~l~~-~g~tii~~tHd 200 (291)
......+...|+.+++ .+.+||+++|-
T Consensus 374 ~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~ 403 (503)
T 1q57_A 374 DERKMIDNLMTKLKGFAKSTGVVLVVICHL 403 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHCCeEEEEEcC
Confidence 1233456667777764 48999999884
No 249
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.38 E-value=8e-05 Score=61.74 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999985
No 250
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.37 E-value=5.8e-05 Score=63.45 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=27.3
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSF 80 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g 80 (291)
.+++|+|++|||||||++.|.+.+++. -|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 589999999999999999999876543 35555443
No 251
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.36 E-value=7.1e-05 Score=63.24 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.7
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998865
No 252
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.35 E-value=1.9e-05 Score=73.81 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=33.2
Q ss_pred eeEeeeeEEEeCCcE--EEEECCCCccHHHHHHHHHcCC
Q psy6612 33 VVLKGLNLNVPENKI--YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei--~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367788888999998 9999999999999999999865
No 253
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.32 E-value=7.9e-05 Score=65.71 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=33.9
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
...++.++.|+|++||||||+.+.|+..+. .|.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 567789999999999999999999998764 35677777654
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.32 E-value=0.00011 Score=64.00 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
+-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999974
No 255
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.31 E-value=0.00061 Score=62.78 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=67.8
Q ss_pred EeCCcEEEEECCCCccHHHHH-HHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLL-NCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl-~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
+++| ++-|.||.|||||||+ .+++...+...| ..+.|+.-+..+.+ .
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g---------~~vlyId~E~s~~~---~------------------- 73 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPD---------AVCLFYDSEFGITP---A------------------- 73 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTT---------CEEEEEESSCCCCH---H-------------------
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCC---------ceEEEEeccchhhH---H-------------------
Confidence 6789 9999999999999995 555444321111 12344443322211 0
Q ss_pred HHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH--h--cCCCEEEEcccCCCCC-------H--------HHHHHHH
Q psy6612 121 TRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL--L--HNPKLLILDEPTVGLD-------P--------ILSQIIW 181 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral--~--~~p~llllDEPtsgLD-------~--------~~~~~i~ 181 (291)
.++.+|++..+-.+..=.-++++.+.++.++ + .+|+++++|=-++=.- + ...+.+-
T Consensus 74 -----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s 148 (333)
T 3io5_A 74 -----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMK 148 (333)
T ss_dssp -----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHH
T ss_pred -----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHH
Confidence 1233444321111111223566657777776 3 3699999997665531 0 1233444
Q ss_pred HHHHH---hH-hCCcEEEEEccCHh
Q psy6612 182 DRLKE---MA-LNGKTIIITTHYIE 202 (291)
Q Consensus 182 ~~l~~---l~-~~g~tii~~tHd~~ 202 (291)
+.|++ ++ +.+.++|++-|-..
T Consensus 149 ~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 149 SLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHhCCEEEEECCeee
Confidence 44544 33 56899999999755
No 256
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.24 E-value=9e-05 Score=65.01 Aligned_cols=34 Identities=32% Similarity=0.601 Sum_probs=24.5
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
++++++.+++| +.|.||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44555555555 88999999999999999998753
No 257
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.23 E-value=0.00011 Score=64.35 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=30.6
Q ss_pred HHHHhcCCCEEEEcccCCC-CCHHHHHHHHHHHHHhHhCCcEEEEEcc
Q psy6612 153 AVSLLHNPKLLILDEPTVG-LDPILSQIIWDRLKEMALNGKTIIITTH 199 (291)
Q Consensus 153 Aral~~~p~llllDEPtsg-LD~~~~~~i~~~l~~l~~~g~tii~~tH 199 (291)
..++...|+++|+|||-.- .+.......++.+..+...|..++.++|
T Consensus 78 ~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 78 DALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3334468999999997642 3433333444555555567888999998
No 258
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.21 E-value=0.0011 Score=57.90 Aligned_cols=51 Identities=24% Similarity=0.215 Sum_probs=36.5
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccC-----------HhHHhhhCeEEEEe
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY-----------IEEAKGAHNIGLMR 214 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd-----------~~~~~~~d~i~~l~ 214 (291)
+|+++++||--. |+.. +.+.+..+++.|.+||++-|+ .+++..||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999954 6643 445566666668999999992 22334599998875
No 259
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.19 E-value=7e-05 Score=65.94 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998543
No 260
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.19 E-value=0.00098 Score=61.46 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=25.1
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
-.+.+|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688899999999999999999988875
No 261
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.17 E-value=0.0002 Score=58.15 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 262
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.15 E-value=0.00011 Score=68.78 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=40.4
Q ss_pred CCCEEEEcccCCCCC---HHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 159 NPKLLILDEPTVGLD---PILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 159 ~p~llllDEPtsgLD---~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.|.++++||-=.-++ +.....+.+.+++.++.|..++++||+++.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~ 310 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDF 310 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHh
Confidence 588999999988884 7788889999999988899999999998765
No 263
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.14 E-value=0.00086 Score=58.86 Aligned_cols=56 Identities=13% Similarity=0.028 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH---hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-h--CCcEEEEEccCHh
Q psy6612 146 QQRRISFAVSL---LHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-L--NGKTIIITTHYIE 202 (291)
Q Consensus 146 qkQrv~iAral---~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~--~g~tii~~tHd~~ 202 (291)
++.+-.+.+++ ..+++++|+--+.+.+... ...+++.+.++. . .+.++|+++|-.+
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~D 150 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKED 150 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGG
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHh
Confidence 44444555555 3788888777666666543 455566666653 2 1578999998544
No 264
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.11 E-value=0.00028 Score=57.94 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998654
No 265
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.11 E-value=0.0016 Score=60.25 Aligned_cols=27 Identities=37% Similarity=0.567 Sum_probs=23.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+..-+.|.||.|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356679999999999999999999764
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.08 E-value=0.0003 Score=58.12 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998644
No 267
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.06 E-value=0.00063 Score=65.23 Aligned_cols=128 Identities=13% Similarity=0.169 Sum_probs=75.1
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
.|+.+.--+.+|+++.|.|+.|+|||||+--++.-..-. | ..+.|+.-+ ++..+..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g---------~~vl~fSlE------ms~~ql~-------- 241 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D---------DVVNLHSLE------MGKKENI-------- 241 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T---------CEEEEECSS------SCTTHHH--------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C---------CEEEEEECC------CCHHHHH--------
Confidence 455554458999999999999999999986665432111 2 124444322 2322221
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCcC--cCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hC
Q psy6612 114 MTDDQIETRSKEILKLLELPPAKKIVG--ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LN 190 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~--~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~ 190 (291)
.++.. ...+++..+-.-+ .|+..+.+|+.-|...+.+.+++|.|+|. +++. .+...+++++ +.
T Consensus 242 -------~R~~~--~~~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~ 307 (444)
T 3bgw_A 242 -------KRLIV--TAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKN 307 (444)
T ss_dssp -------HHHHH--HHSCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHS
T ss_pred -------HHHHH--HHcCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHh
Confidence 11111 1122221000112 27888889998888888888999999874 4443 4555666664 34
Q ss_pred CcE--EEEEcc
Q psy6612 191 GKT--IIITTH 199 (291)
Q Consensus 191 g~t--ii~~tH 199 (291)
|.. +|++-+
T Consensus 308 ~~~~~lIVID~ 318 (444)
T 3bgw_A 308 PGKRVIVMIDY 318 (444)
T ss_dssp CSSCEEEEEEC
T ss_pred CCCCeEEEEec
Confidence 666 777755
No 268
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.05 E-value=0.00032 Score=59.91 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHc
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999997
No 269
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.05 E-value=0.0016 Score=52.16 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
..+.-+.|.||.|+|||++.+.|......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 34556899999999999999999886543
No 270
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.02 E-value=0.0066 Score=54.11 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++..+.|.||.|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345579999999999999999888765
No 271
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.02 E-value=0.00033 Score=56.55 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=18.2
Q ss_pred EEEEECCCCccHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCI 65 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i 65 (291)
+++|.||.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999998
No 272
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.00 E-value=0.00033 Score=58.13 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=23.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998643
No 273
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.00 E-value=0.0077 Score=54.87 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
No 274
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.99 E-value=0.00081 Score=55.76 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=25.6
Q ss_pred EEEEECCCCccHHHHHHHHH-cC----CCCCcc----EEEECCEe
Q psy6612 47 IYGLLGPSGCGKTTLLNCIV-GR----NTLDAG----TIKLSFRQ 82 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~-gl----~~p~~G----~I~~~g~~ 82 (291)
-++|+|++|+|||||++.++ +. ..|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 47899999999999996554 43 456655 45555543
No 275
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.99 E-value=9.8e-05 Score=62.51 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
+++|.|++||||||+++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
No 276
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.97 E-value=0.0015 Score=56.04 Aligned_cols=46 Identities=22% Similarity=0.109 Sum_probs=31.4
Q ss_pred HhcCCCEEEEcccCC----CCCHHHHHHHHHHHHHhH-hCCcEEEEEccCH
Q psy6612 156 LLHNPKLLILDEPTV----GLDPILSQIIWDRLKEMA-LNGKTIIITTHYI 201 (291)
Q Consensus 156 l~~~p~llllDEPts----gLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~ 201 (291)
-..+|+++++|--+. .-|......+...|+.++ +.+.++++++|-.
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 356899999985432 114455666777777776 4589999998853
No 277
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.97 E-value=0.00034 Score=61.77 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+++|+||+|||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 278
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.95 E-value=0.00061 Score=63.74 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=29.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHc-----------CCCCCccEEEECC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVG-----------RNTLDAGTIKLSF 80 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~g-----------l~~p~~G~I~~~g 80 (291)
|-.++|+|.+|+|||||++.|+| -+.|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 3457778887765
No 279
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.94 E-value=0.00044 Score=57.70 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
No 280
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.91 E-value=0.0044 Score=68.14 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=77.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
-+++|+++.|.||+|+|||||+..++.......|. +.|+.-+... .+..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~----------VlyiS~Ees~------~ql~--------------- 776 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT----------CAFIDAEHAL------DPIY--------------- 776 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC----------EEEECTTSCC------CHHH---------------
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCC----------eEEEeccchH------HHHH---------------
Confidence 38999999999999999999998887755432232 3333222111 1110
Q ss_pred HHHHHHHHHcCCCCCCCCc-CcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCC-H------------HHHHHHHHHH
Q psy6612 121 TRSKEILKLLELPPAKKIV-GALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLD-P------------ILSQIIWDRL 184 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~~-~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD-~------------~~~~~i~~~l 184 (291)
.+.+|++..+-.+ ..-+. .+-...++.++ .+|+++++|+..+-.. . ...+.+.+.+
T Consensus 777 ------A~~lGvd~~~L~i~~~~~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~L 848 (1706)
T 3cmw_A 777 ------ARKLGVDIDNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAM 848 (1706)
T ss_dssp ------HHHTTCCGGGCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHH
T ss_pred ------HHHcCCChhheEEecCCcH--HHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHH
Confidence 1112221100000 01122 24445555443 5899999999887652 1 1233455556
Q ss_pred HHh---H-hCCcEEEEEccCHh----------------HHhh-hCeEEEEeCC
Q psy6612 185 KEM---A-LNGKTIIITTHYIE----------------EAKG-AHNIGLMRDD 216 (291)
Q Consensus 185 ~~l---~-~~g~tii~~tHd~~----------------~~~~-~d~i~~l~~G 216 (291)
++| + +.|.+||+++|--. .++. ||.++.+.++
T Consensus 849 r~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~ 901 (1706)
T 3cmw_A 849 RKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 901 (1706)
T ss_dssp HHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEec
Confidence 554 3 45899999988321 2444 7888888543
No 281
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.90 E-value=0.00042 Score=57.94 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=25.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 80 (291)
..+++|.|++||||||+.+.|+.. |-..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 358999999999999999999985 5555543
No 282
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.90 E-value=0.00041 Score=57.07 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 283
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.89 E-value=0.00057 Score=57.24 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999876
No 284
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.89 E-value=0.00052 Score=56.62 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++++|++|+|||||++.+.+-.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
No 285
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.86 E-value=0.00059 Score=56.42 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998643
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.86 E-value=0.00057 Score=55.83 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.3
Q ss_pred cEEEEECCCCccHHHHHHHHHc
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~g 67 (291)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 287
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.86 E-value=0.00052 Score=58.24 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.|+||+|||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999887543
No 288
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.86 E-value=0.00046 Score=61.26 Aligned_cols=44 Identities=20% Similarity=0.081 Sum_probs=34.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEE
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIG 211 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~ 211 (291)
|||+.+..+...+++.+.+.... ..+..+.+|..+.++. ++++.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~ 189 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHIS 189 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHH
Confidence 99999999999999999887643 4556778888887755 66543
No 289
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.85 E-value=0.00052 Score=56.67 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=22.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
.++.++.|.|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999843
No 290
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.84 E-value=0.00067 Score=56.95 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
+|.+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999876543
No 291
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.81 E-value=0.00057 Score=61.60 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=29.3
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 80 (291)
-..|.++.|.||+||||||+.+.|+.-++ .|.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 34678999999999999999999986542 35666765
No 292
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.80 E-value=0.00046 Score=61.76 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=35.4
Q ss_pred CCEeeEeeeeEEEeCC-----------cEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q psy6612 30 GNHVVLKGLNLNVPEN-----------KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~G-----------ei~~liGpNGaGKSTLl~~i~gl~~p~~G~I 76 (291)
|...+++.+...+..+ ..+.|.||+|+||||+.++|++...+..|.+
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4444555555555544 5899999999999999999999887766644
No 293
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.79 E-value=0.00073 Score=55.84 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
++.+++|.|+.||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998753
No 294
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.79 E-value=0.00063 Score=56.50 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999998643
No 295
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.78 E-value=0.0055 Score=58.70 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
++.+++++|++||||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887764
No 296
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.77 E-value=0.00071 Score=57.01 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=23.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
No 297
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.77 E-value=0.0022 Score=51.25 Aligned_cols=40 Identities=8% Similarity=-0.033 Sum_probs=28.9
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEcc
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH 199 (291)
+..+|++||. ..|++..+..+.+.+.+....+..+|++|+
T Consensus 75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 3578999995 567888888888888775333455666665
No 298
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.72 E-value=0.00081 Score=56.70 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=24.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
..+|.+++|.|+.||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998643
No 299
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.65 E-value=0.00087 Score=56.20 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 300
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.65 E-value=0.0009 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987543
No 301
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.63 E-value=0.00073 Score=55.55 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=18.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998544
No 302
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.63 E-value=0.001 Score=55.20 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998755
No 303
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.62 E-value=0.0085 Score=66.81 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=78.3
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
+++|+++.|.||+|+|||||...++.-.....+ .+.|+.-+..+.+ ++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~----------~vlyis~E~s~~~---~~------------------- 427 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----------TCAFIDAEHALDP---IY------------------- 427 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC----------CEEEECTTSCCCH---HH-------------------
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCC----------eEEEEEcCCCHHH---HH-------------------
Confidence 899999999999999999998766654322211 2444433322110 00
Q ss_pred HHHHHHHHcCCCCCCCCc-CcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCC-H------------HHHHHHHHHHH
Q psy6612 122 RSKEILKLLELPPAKKIV-GALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLD-P------------ILSQIIWDRLK 185 (291)
Q Consensus 122 ~~~~~l~~~~l~~~~~~~-~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD-~------------~~~~~i~~~l~ 185 (291)
++.+|++..+-.+ ...+. .|-+.+++.++ .+|+++++|.-++-.. . ...+.+.+.++
T Consensus 428 -----a~~lGvd~~~L~I~~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr 500 (2050)
T 3cmu_A 428 -----ARKLGVDIDNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 500 (2050)
T ss_dssp -----HHHTTCCTTTCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHH
T ss_pred -----HHHcCCCHHHeEEeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHH
Confidence 1122332111011 11233 34456677664 5799999999876552 1 12334556666
Q ss_pred Hh---H-hCCcEEEEEccCHh----------------HHhh-hCeEEEEeCC
Q psy6612 186 EM---A-LNGKTIIITTHYIE----------------EAKG-AHNIGLMRDD 216 (291)
Q Consensus 186 ~l---~-~~g~tii~~tHd~~----------------~~~~-~d~i~~l~~G 216 (291)
+| + +.+.+||+++|--. .++. ||.++.|...
T Consensus 501 ~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~ 552 (2050)
T 3cmu_A 501 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 552 (2050)
T ss_dssp HHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEec
Confidence 65 3 45899999988422 2344 7878777654
No 304
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.61 E-value=0.001 Score=55.60 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.7
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999887653
No 305
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.60 E-value=0.011 Score=55.87 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.6
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
=....++.|+|++||||||+.+.|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999998763
No 306
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.00095 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++++|+.|||||||++.+++-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 307
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.60 E-value=0.0012 Score=63.14 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHhcCCCEEEEcccCC-CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 145 GQQRRISFAVSLLHNPKLLILDEPTV-GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 145 GqkQrv~iAral~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.+.+....+...+.+++++|+..... ++... ...+.+.++ +.++.+|++-+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~---~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILY---RTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHT---TCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHH---HcCCCEEEEEECccch
Confidence 47777778888888899888776654 45544 344555544 3567788877766654
No 308
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.55 E-value=0.0024 Score=58.53 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=31.5
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
....+++..+.+ .|.-++|.|++|+|||||...+.+
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 356788888888 789999999999999999998887
No 309
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.54 E-value=0.0014 Score=55.87 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
No 310
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.53 E-value=0.0012 Score=54.81 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.9
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.+.+++|.|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999998643
No 311
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.52 E-value=0.0013 Score=58.78 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 312
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.51 E-value=0.0014 Score=52.84 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999864
No 313
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.51 E-value=0.0017 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998765
No 314
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.0014 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 315
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.49 E-value=0.0012 Score=52.64 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 316
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.48 E-value=0.0011 Score=52.97 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
-++++|+.|+|||||++.++|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999987643
No 317
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.47 E-value=0.0014 Score=56.25 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
No 318
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.46 E-value=0.0015 Score=52.32 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++|+.|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
No 319
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.46 E-value=0.0014 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998754
No 320
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.45 E-value=0.013 Score=65.28 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=24.2
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
+++|+.+.|.||.|+|||||...++-
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999988754
No 321
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.44 E-value=0.0012 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 322
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.44 E-value=0.0068 Score=58.75 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=23.7
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.+..-+.|.||+|+|||++.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3555679999999999999999998754
No 323
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.44 E-value=0.0014 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999988754
No 324
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.43 E-value=0.0016 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 325
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.43 E-value=0.0014 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 326
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.43 E-value=0.0014 Score=54.80 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
No 327
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.42 E-value=0.0014 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998653
No 328
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.41 E-value=0.0018 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
...+++|.|+.||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44589999999999999999998543
No 329
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.41 E-value=0.0019 Score=54.23 Aligned_cols=26 Identities=31% Similarity=0.347 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998643
No 330
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.39 E-value=0.0017 Score=54.96 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++|.||.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 331
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.39 E-value=0.0017 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHcC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
No 332
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.39 E-value=0.0016 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 333
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.39 E-value=0.0015 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999988654
No 334
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.38 E-value=0.0016 Score=53.02 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.9
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 335
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.37 E-value=0.0016 Score=52.68 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999888754
No 336
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.37 E-value=0.0023 Score=51.72 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.-.++++|+.|||||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34478999999999999999998753
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.37 E-value=0.0015 Score=55.88 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998643
No 338
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.36 E-value=0.0016 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 339
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.36 E-value=0.0015 Score=53.85 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=20.8
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
No 340
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.35 E-value=0.0015 Score=52.26 Aligned_cols=22 Identities=41% Similarity=0.529 Sum_probs=19.9
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
No 341
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.35 E-value=0.0015 Score=53.49 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 342
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.35 E-value=0.0021 Score=52.34 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.0
Q ss_pred CcEEEEECCCCccHHHHHHHHHcC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|.|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999764
No 343
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.35 E-value=0.0017 Score=52.50 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998653
No 344
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.35 E-value=0.0021 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 345
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.34 E-value=0.001 Score=54.16 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=20.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHc
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.=-++++|++|||||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 346
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.32 E-value=0.0022 Score=56.55 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999865
No 347
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.31 E-value=0.0017 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++|+.|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 348
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.30 E-value=0.0021 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|.||.||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 349
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.30 E-value=0.0017 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
No 350
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.27 E-value=0.015 Score=52.27 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=31.7
Q ss_pred CCCEEEEcccCCCCC-HHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 159 NPKLLILDEPTVGLD-PILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 159 ~p~llllDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
+++++++||.- .|. ...+..+...+.+.. .+..+|++|++...+
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS-SNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGGGS
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcccc
Confidence 78999999974 445 666777777777654 346788888876643
No 351
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.27 E-value=0.002 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 352
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.27 E-value=0.002 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998653
No 353
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.26 E-value=0.0018 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl 68 (291)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 354
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.26 E-value=0.002 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
No 355
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.25 E-value=0.002 Score=53.17 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 356
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.24 E-value=0.0021 Score=51.54 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 357
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.24 E-value=0.0023 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
No 358
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.23 E-value=0.0021 Score=52.51 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 359
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.22 E-value=0.0021 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.330 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
-++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 368999999999999999998754
No 360
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.19 E-value=0.0023 Score=50.99 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=18.6
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999975
No 361
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.19 E-value=0.0026 Score=57.70 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|++|+|||||++.+.|--
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
No 362
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.17 E-value=0.0028 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
No 363
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.16 E-value=0.0027 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-+++|.|+.||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
No 364
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.16 E-value=0.0024 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47999999999999999998643
No 365
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.15 E-value=0.0024 Score=51.43 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 366
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.15 E-value=0.0022 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 367
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.15 E-value=0.0029 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.9
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl 68 (291)
-++||.|+.||||||+.+.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
No 368
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.14 E-value=0.0025 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 369
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.14 E-value=0.0025 Score=51.60 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 370
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.13 E-value=0.019 Score=63.29 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=71.1
Q ss_pred eeEeeeeE--EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 33 VVLKGLNL--NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 33 ~~L~~vsl--~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
..|+.+-= -+++|+++.|.||.|+|||||.-.++..... . | ..+.|+.-+....+ . .
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~-~------G---~~vlyis~E~s~~~---~--~------ 427 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-E------G---KTCAFIDAEHALDP---I--Y------ 427 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-T------T---CCEEEECTTSCCCH---H--H------
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-h------C---CCeEEEEccCchHH---H--H------
Confidence 34555421 3889999999999999999998666543221 1 1 12455544432211 0 0
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCCCCCCcC-cCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCCH-------------
Q psy6612 111 MFDMTDDQIETRSKEILKLLELPPAKKIVG-ALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLDP------------- 174 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD~------------- 174 (291)
++.+|++..+-.+. .-+..| -+.+++.++ .+|+++++|..++-...
T Consensus 428 ----------------a~~lGvd~~~L~i~~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~ 489 (1706)
T 3cmw_A 428 ----------------ARKLGVDIDNLLCSQPDTGEQ--ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMG 489 (1706)
T ss_dssp ----------------HHHTTCCGGGCEEECCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTT
T ss_pred ----------------HHHcCCCHHHeEEcCCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchh
Confidence 11122221000001 112322 334555554 57999999998876641
Q ss_pred HHHHHHHHHHHHh----HhCCcEEEEEccC
Q psy6612 175 ILSQIIWDRLKEM----ALNGKTIIITTHY 200 (291)
Q Consensus 175 ~~~~~i~~~l~~l----~~~g~tii~~tHd 200 (291)
...+.+.+.++++ ++.+.+||+++|-
T Consensus 490 ~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl 519 (1706)
T 3cmw_A 490 LAARMMSQAMRKLAGNLKQSNTLLIFINQI 519 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 1223445555555 3458999999885
No 371
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.13 E-value=0.0032 Score=55.03 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
++-+++|.||.||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999753
No 372
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.13 E-value=0.01 Score=57.54 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=54.7
Q ss_pred CCcCcCChhHHHHHHHHHH--Hhc---------------CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEcc
Q psy6612 137 KIVGALSGGQQRRISFAVS--LLH---------------NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAra--l~~---------------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH 199 (291)
+..+.+||||+|-.-+|.+ +++ .-.+++|||. +-+|....+..+++++++ |.-+|++|=
T Consensus 375 ~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP 450 (483)
T 3euj_A 375 AESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAP 450 (483)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEES
T ss_pred cccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECc
Confidence 3467899999996544443 333 2257999999 999999999999999987 677888887
Q ss_pred CHhHH-hhhCeEEEEe
Q psy6612 200 YIEEA-KGAHNIGLMR 214 (291)
Q Consensus 200 d~~~~-~~~d~i~~l~ 214 (291)
+ .+ ..+|.++.+-
T Consensus 451 ~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E--NISPERGTTYKLV 464 (483)
T ss_dssp S--SCCCSSSEEEECC
T ss_pred c--hhhhccCceEEEE
Confidence 7 33 3478777664
No 373
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.10 E-value=0.003 Score=57.30 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|+|+.|||||||++.+.|.-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999864
No 374
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.10 E-value=0.0035 Score=50.80 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999988764
No 375
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.10 E-value=0.0026 Score=56.26 Aligned_cols=23 Identities=43% Similarity=0.689 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
No 376
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.09 E-value=0.0028 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 377
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.09 E-value=0.0023 Score=56.75 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999988754
No 378
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.08 E-value=0.0025 Score=59.63 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 379
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.07 E-value=0.0027 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++++|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998865
No 380
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.06 E-value=0.003 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.=-++++|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998754
No 381
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.06 E-value=0.0055 Score=52.69 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=29.1
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
.....+...-+.+ .|..+.|+||+|||||||...++..
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3444566655554 6789999999999999999988764
No 382
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.05 E-value=0.0026 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
No 383
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.05 E-value=0.0029 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998643
No 384
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.05 E-value=0.0017 Score=58.69 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=19.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++-++||.||+||||||+.+.++..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
No 385
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.03 E-value=0.003 Score=52.52 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 386
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.02 E-value=0.003 Score=51.95 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 387
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.02 E-value=0.003 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 388
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.02 E-value=0.0039 Score=53.71 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=24.9
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
-+|.++++.|+.||||||+++.|+..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876643
No 389
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.01 E-value=0.0032 Score=56.39 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHc
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.-+++|.|+.||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
No 390
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.00 E-value=0.0028 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
No 391
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.00 E-value=0.0031 Score=55.08 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 392
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.00 E-value=0.002 Score=54.48 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.5
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-.++|+|+.|+|||||++.++|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 393
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0029 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
No 394
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.98 E-value=0.0033 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999988754
No 395
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.98 E-value=0.0035 Score=55.36 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 396
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.97 E-value=0.0043 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999998864
No 397
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.003 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 398
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.96 E-value=0.0038 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 399
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.95 E-value=0.0014 Score=63.36 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=34.6
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~ 77 (291)
..+++.+ +.+-+|+..+|+||+|+|||||++.|++......|.+.
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 3466666 67789999999999999999999999876543334443
No 400
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.95 E-value=0.0041 Score=55.29 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCCccE
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGT 75 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p~~G~ 75 (291)
-.++++|.+|+|||||++.+.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 378999999999999999999976544443
No 401
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.94 E-value=0.0035 Score=54.73 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=22.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.+|.++.+.|+.||||||+.+.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999987654
No 402
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.93 E-value=0.0034 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
No 403
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.92 E-value=0.0035 Score=55.82 Aligned_cols=23 Identities=43% Similarity=0.730 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|..|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
No 404
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.91 E-value=0.0037 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 405
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.90 E-value=0.0039 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998644
No 406
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.90 E-value=0.0037 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 407
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.90 E-value=0.0038 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
No 408
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.0036 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.1
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-.++++|+.|||||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999988753
No 409
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.89 E-value=0.0037 Score=52.11 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++|+|++|+|||||++.++|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 410
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.89 E-value=0.0039 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 411
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.89 E-value=0.0034 Score=51.02 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999884
No 412
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.89 E-value=0.0028 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998764
No 413
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.89 E-value=0.0033 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57999999999999999998764
No 414
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.88 E-value=0.0039 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++++|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.87 E-value=0.0044 Score=55.29 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.2
Q ss_pred cEEEEECCCCccHHHHHHHHHc
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~g 67 (291)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 416
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.87 E-value=0.0039 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|+|||||++.+++-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 417
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.87 E-value=0.0039 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999998864
No 418
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.86 E-value=0.0046 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+|.++++.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987664
No 419
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.0035 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 420
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.86 E-value=0.0039 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 421
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.85 E-value=0.041 Score=48.20 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=38.4
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccC-----------HhHHhhhCeEEEEe
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY-----------IEEAKGAHNIGLMR 214 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd-----------~~~~~~~d~i~~l~ 214 (291)
.+.+++++||---..| +.++++.+.+.|+.||++-++ .+++..||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877654 555555555578999999999 33345699988764
No 422
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.84 E-value=0.0035 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 423
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.84 E-value=0.0041 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|+|||||++.+++-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
No 424
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.0041 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 425
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.83 E-value=0.0041 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 426
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.83 E-value=0.0043 Score=55.62 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.++|+|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999753
No 427
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.0037 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988764
No 428
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.82 E-value=0.0046 Score=50.09 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999987653
No 429
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.82 E-value=0.005 Score=53.10 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+|.++.+-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 430
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.82 E-value=0.0041 Score=51.24 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 431
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.82 E-value=0.0036 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 432
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.81 E-value=0.0049 Score=51.86 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
-++|+|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 479999999999999999997543
No 433
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.81 E-value=0.0042 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
No 434
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.80 E-value=0.0056 Score=52.77 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998653
No 435
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.80 E-value=0.0042 Score=51.83 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 436
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.80 E-value=0.0048 Score=51.27 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
-++++|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998644
No 437
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.79 E-value=0.0039 Score=52.04 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.79 E-value=0.005 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 439
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.74 E-value=0.015 Score=59.10 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.|.||.|+|||++.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 440
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.73 E-value=0.0049 Score=52.12 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 441
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.72 E-value=0.0049 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.0
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
No 442
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.71 E-value=0.0058 Score=52.92 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997663
No 443
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.69 E-value=0.0045 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 444
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.68 E-value=0.0061 Score=52.75 Aligned_cols=29 Identities=24% Similarity=0.184 Sum_probs=26.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
.+|.++.+-|+.||||||+.+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987765
No 445
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.67 E-value=0.0052 Score=50.71 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4799999999999999888764
No 446
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.66 E-value=0.0058 Score=52.94 Aligned_cols=27 Identities=41% Similarity=0.577 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
....-+.|.||.|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998754
No 447
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.66 E-value=0.0057 Score=56.61 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.1
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987653
No 448
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.66 E-value=0.0046 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 449
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.65 E-value=0.01 Score=61.09 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.1
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
..+.|.||+|+|||++.+.|+.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999987654
No 450
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.64 E-value=0.0069 Score=52.68 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.+|.++++.|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
No 451
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.64 E-value=0.0034 Score=51.07 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=9.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999987643
No 452
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.63 E-value=0.0072 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++++|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.60 E-value=0.0051 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 454
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.59 E-value=0.0052 Score=54.51 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.++|+|..|+|||||++.++|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999753
No 455
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.58 E-value=0.0072 Score=52.36 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=24.8
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
+-.+.+..++.|+||.||||||..+.|+--
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 334567789999999999999999999854
No 456
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.57 E-value=0.0053 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
No 457
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.56 E-value=0.0075 Score=55.34 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.2
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.+++|.||+|||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998754
No 458
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.55 E-value=0.0059 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++++|+.|+|||||++.+.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 459
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.55 E-value=0.006 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++++|+.|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
No 460
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0057 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999865
No 461
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.52 E-value=0.009 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++.+++|+||.|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999865
No 462
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.49 E-value=0.0032 Score=53.03 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+++-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 463
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.48 E-value=0.0051 Score=54.06 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 578899999999999999999998766
No 464
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.47 E-value=0.0015 Score=57.20 Aligned_cols=28 Identities=36% Similarity=0.698 Sum_probs=22.8
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
++....| +.|.||+|+|||||.++|+..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3444555 779999999999999999974
No 465
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.45 E-value=0.0078 Score=55.32 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.7
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
No 466
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.44 E-value=0.0017 Score=62.13 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=26.4
Q ss_pred EEEeCC--cEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 40 LNVPEN--KIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 40 l~i~~G--ei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
|.+.++ .+++++|++|+||||+...|++.+..
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444444 59999999999999999999998764
No 467
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.43 E-value=0.008 Score=51.41 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 468
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.38 E-value=0.0072 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=20.6
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-.++|+|+.|+|||||++.+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999998887653
No 469
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.36 E-value=0.0033 Score=52.09 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=4.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988865
No 470
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.33 E-value=0.0097 Score=49.84 Aligned_cols=39 Identities=13% Similarity=0.348 Sum_probs=28.0
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHh
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE 202 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~ 202 (291)
+++++++||-=- +++ .+.+.|+.+++.|..|+++.++.+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccc
Confidence 678999999743 543 355667777766888998888544
No 471
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.32 E-value=0.0073 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999987643
No 472
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.31 E-value=0.0051 Score=50.50 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999865
No 473
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.0084 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 474
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.25 E-value=0.011 Score=50.49 Aligned_cols=26 Identities=35% Similarity=0.545 Sum_probs=23.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
|.++++=|+-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999987664
No 475
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.23 E-value=0.0079 Score=50.39 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.9
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++++|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999988875
No 476
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.20 E-value=0.0091 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999988765
No 477
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.10 E-value=0.011 Score=48.88 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=31.9
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.++.++++||. ..+++.....+...+.+.. .+..+|++|+....+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~ 145 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYVSRI 145 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGS
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCChhhc
Confidence 36889999995 5677777777777776643 346677777766543
No 478
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.09 E-value=0.013 Score=53.60 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4579999999999999999998654
No 479
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.07 E-value=0.0094 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988864
No 480
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.07 E-value=0.013 Score=50.25 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
++.|+||.||||+|..+.|+.-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 481
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.85 E-value=0.0074 Score=57.79 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=28.5
Q ss_pred eeeeEEEeCCcE--EEEECCCCccHHHHHHHHHcCCCC
Q psy6612 36 KGLNLNVPENKI--YGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 36 ~~vsl~i~~Gei--~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
+.+.-.+..|.+ +.|.||.|+|||||.++|+.....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 444455566665 899999999999999999987754
No 482
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.81 E-value=0.013 Score=53.59 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=25.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
.+|..+.|.||.|+|||||.+.++..+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35678999999999999999999987653
No 483
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.74 E-value=0.021 Score=51.24 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.7
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
-.++++|.+|+|||||+|.|.|-...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCcee
Confidence 36899999999999999999997643
No 484
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.74 E-value=0.012 Score=54.37 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
..-+++|+|+.|+|||||++.+++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999987653
No 485
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.71 E-value=0.035 Score=46.66 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=24.9
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.++..- ---.|.-+.|.|++|+|||||...+..
T Consensus 6 ~lHas~-v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANF-LVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEE-EEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEE-EEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 344333 345688999999999999999877764
No 486
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.65 E-value=0.76 Score=44.54 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHc
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~g 67 (291)
..+++|+|+-|.|||||.+.++.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999999999984
No 487
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.63 E-value=0.011 Score=50.00 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=18.6
Q ss_pred EEEEECCCCccHHHHHHH-HHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNC-IVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~-i~gl 68 (291)
-++++|+.|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5553
No 488
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.63 E-value=0.015 Score=54.73 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++|+|..++|||||++.++|-.
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999999864
No 489
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.63 E-value=0.006 Score=50.87 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++++|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988764
No 490
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.58 E-value=0.019 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+++|.||+|||||||.+.|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999888644
No 491
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.55 E-value=0.018 Score=50.55 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=22.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
.+..-+.|.||.|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999875
No 492
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.53 E-value=0.019 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.-+.|.||.|+||||+.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999865
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.50 E-value=0.022 Score=51.58 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+.-+.|.||.|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987554
No 494
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.49 E-value=0.02 Score=51.38 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
....+.|.||.|+|||+|.++|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33467888999999999999999765
No 495
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.44 E-value=0.0039 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988754
No 496
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.43 E-value=0.017 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++|+|+.|+|||||++.++|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 497
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.43 E-value=0.022 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+..+.|.||.|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998754
No 498
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.40 E-value=0.02 Score=52.65 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++.-+.|.||+|+||||+.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999876
No 499
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.32 E-value=0.023 Score=49.69 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.+||+|+.||||||+.+.|+.-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998753
No 500
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.32 E-value=0.026 Score=51.08 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+..-+.|.||.|+|||||.++++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 44568999999999999999998753
Done!