RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6612
(291 letters)
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 203 bits (518), Expect = 3e-64
Identities = 92/280 (32%), Positives = 151/280 (53%), Gaps = 31/280 (11%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
E+IEV++ +T Y + L G++ V +I+GLLGP+G GKTTLL + G
Sbjct: 3 EVIEVRN---LTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP 57
Query: 72 DAGTIKL----------SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121
+G I + R+ IGY+PQE +L+ EL++RE ++ ++ ++ ++ E
Sbjct: 58 TSGEILVLGYDVVKEPAKVRRR--IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEE 115
Query: 122 RSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
R +E+L+L L A K V LSGG ++R+S A++LLH+P+LLILDEPT GLDP + I
Sbjct: 116 RIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175
Query: 181 WDRLKEMALNGK-TIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDA 238
W+ L+E+A G TI+++TH +EEA + + ++ D G+++ E+
Sbjct: 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILND----GKII-------AEGTPEEL 224
Query: 239 LRHGNVINKVDLVDGRGSIDEVLSRQCTVSVDVDRPAINE 278
++L R + E+L V + + I E
Sbjct: 225 KEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILE 264
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 175 bits (446), Expect = 6e-55
Identities = 69/211 (32%), Positives = 112/211 (53%), Gaps = 50/211 (23%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IEV++ ++ K+ G L ++L V + +IYGLLGP+G GKTTL+ I+G D+
Sbjct: 1 IEVRN---LS---KRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS 54
Query: 74 GTIKLSFRQISD--------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
G IK+ + I IGY+P+E +L+ L++RE +
Sbjct: 55 GEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL------------------ 96
Query: 126 ILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
SGG ++R++ A +LLH+P+LLILDEPT GLDP + W+ L+
Sbjct: 97 -----------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLR 139
Query: 186 EMALNGKTIIITTHYIEEA-KGAHNIGLMRD 215
E+ GKTI++++H +EEA + + ++ +
Sbjct: 140 ELKKEGKTILLSSHILEEAERLCDRVAILNN 170
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 161 bits (411), Expect = 5e-49
Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 15/212 (7%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+++++ +T YKK V L+LNV + +I+GLLG +G GKTT L + G +
Sbjct: 1 LQIRN---LTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS 56
Query: 74 GTIKLSFRQI--------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
GT ++ I +GY PQ AL EL++RE R+Y + + +I+ +
Sbjct: 57 GTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL 116
Query: 126 ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+L++L L A K LSGG +R++S A++L+ P +L+LDEPT GLDP + IWD +
Sbjct: 117 LLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI 176
Query: 185 KEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215
E+ ++II+TTH ++EA+ I +M D
Sbjct: 177 LEVRKG-RSIILTTHSMDEAEALCDRIAIMSD 207
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 153 bits (389), Expect = 6e-45
Identities = 76/217 (35%), Positives = 119/217 (54%), Gaps = 18/217 (8%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS------- 79
K G+ + G+N V E +++G LGP+G GKTT + + +GT +++
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60
Query: 80 ---FRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-PPA 135
R+ IG +PQ ++ +L+ RE G ++ + D+ E R++E+L+L EL A
Sbjct: 61 PRKVRR--SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA 118
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
+ VG SGG +RR+ A SL+H P +L LDEPT GLDP + IWD ++ + G TI+
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 196 ITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESL 231
+TTHY+EEA K I ++ GR++ E L
Sbjct: 179 LTTHYMEEADKLCDRIAIIDH----GRIIAEGTPEEL 211
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 146 bits (372), Expect = 3e-43
Identities = 74/211 (35%), Positives = 107/211 (50%), Gaps = 14/211 (6%)
Query: 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS- 84
K G+ L L+L V + LLGPSGCGKTTLL I G D+G I + R ++
Sbjct: 7 SKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTG 66
Query: 85 ------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKK 137
+IG + Q+ AL L++ E + + + +I R +E+L+L+ L +
Sbjct: 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNR 126
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIII 196
LSGGQQ+R++ A +L P LL+LDEP LD L + + + LKE+ G T I
Sbjct: 127 YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIY 186
Query: 197 TTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226
TH EEA A I +M + GR+V
Sbjct: 187 VTHDQEEALALADRIAVMNE----GRIVQVG 213
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 147 bits (372), Expect = 2e-42
Identities = 68/188 (36%), Positives = 111/188 (59%), Gaps = 9/188 (4%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--- 83
K+ G+ +V+ GL+ +V + +GLLGP+G GKTT L ++G DAG+I L +
Sbjct: 15 KRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR 74
Query: 84 -----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-PAKK 137
+G +PQ L + ++RE +G F ++ +L+ +L A
Sbjct: 75 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADA 134
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
VG LSGG +RR++ A +L+++P +L+LDEPT GLDP ++W+RL+ + GKTI++T
Sbjct: 135 KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLT 194
Query: 198 THYIEEAK 205
TH++EEA+
Sbjct: 195 THFMEEAE 202
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 143 bits (364), Expect = 3e-42
Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Query: 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI-----KLSF 80
K+ G L ++ +V + +I+GLLGP+G GKTT + I+G D+G + L
Sbjct: 7 TKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI 66
Query: 81 RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIV 139
+ IGY+P+E L+ ++ + + Y + + ++ R E L+ LEL A K V
Sbjct: 67 AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV 126
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LS G Q+++ F +++H+P+LLILDEP GLDP+ +++ D ++E+A GKT+I++TH
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186
Query: 200 YIEEA 204
+E
Sbjct: 187 QMELV 191
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 140 bits (354), Expect = 1e-40
Identities = 65/201 (32%), Positives = 110/201 (54%), Gaps = 16/201 (7%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IEV++ V KK G+ ++G++ V +I+GLLGP+G GKTT + + +
Sbjct: 1 IEVENLV------KKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS 54
Query: 74 GTIKLSFRQIS--------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
G ++ + IG + Q+L++ EL+ E + ++ + + R E
Sbjct: 55 GRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDE 114
Query: 126 ILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+L + L A ++V SGG +RR+ A SL+H P++L LDEPT+GLDP +W+ +
Sbjct: 115 LLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI 174
Query: 185 KEM-ALNGKTIIITTHYIEEA 204
+++ G TI++TTHY+EEA
Sbjct: 175 EKLKEEFGMTILLTTHYMEEA 195
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 139 bits (353), Expect = 3e-39
Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 11/215 (5%)
Query: 2 RKISIKRIDPEIIEVKHSVAV--TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKT 59
+ I I +VA+ K G+ V+ GL+ V + +GLLGP+G GK+
Sbjct: 22 KHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKS 81
Query: 60 TLLNCIVGRNTLDAGTIKLSFRQISD--------IGYMPQELALHGELSIRETFRYYGYM 111
T+ I+G + DAG I + + IG +PQ L E ++RE +G
Sbjct: 82 TIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRY 141
Query: 112 FDMTDDQIETRSKEILKLLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
F M+ +IE +L+ L A V LSGG +RR++ A +L+++P+LLILDEPT
Sbjct: 142 FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201
Query: 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
GLDP +IW+RL+ + GKTI++TTH++EEA+
Sbjct: 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAE 236
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 132 bits (335), Expect = 1e-38
Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 42/190 (22%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
+ G L ++L + +I L+GP+G GK+TLL I G +G I + + I+
Sbjct: 7 FRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK- 65
Query: 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQ 146
L + E R GY+ LSGGQ
Sbjct: 66 ------------LPLEELRRRIGYVPQ----------------------------LSGGQ 85
Query: 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA-K 205
++R++ A +LL NP LL+LDEPT GLDP + + + L+E+A G+T+II TH E A
Sbjct: 86 RQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145
Query: 206 GAHNIGLMRD 215
A + +++D
Sbjct: 146 AADRVIVLKD 155
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 134 bits (340), Expect = 2e-38
Identities = 65/218 (29%), Positives = 116/218 (53%), Gaps = 19/218 (8%)
Query: 14 IEVKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
IE+K+ ++ Y G V LKG++L++ + + ++GPSG GK+TLLN + G +
Sbjct: 1 IELKN---LSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT 57
Query: 73 AGTI--------KLSFRQISD-----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQI 119
+G + KLS ++++ IG++ Q L +L+ E + + +
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 120 ETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
R++E+L+ + L LSGGQQ+R++ A +L ++PK+++ DEPT LD +
Sbjct: 118 RERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 179 IIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRD 215
+ + L+E+ G TI++ TH E A+ A I +RD
Sbjct: 178 EVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRD 215
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 134 bits (341), Expect = 2e-38
Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 25/208 (12%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IE++ +T ++ G VLKG++L+V +I ++GPSG GK+TLL IVG D+
Sbjct: 1 IELRG---LTKSF---GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS 54
Query: 74 GTIKLSFRQISD------------IGYMPQELALHGELSIRETFRYYGYM-FDMTDDQIE 120
G + + IS +G + Q AL L++ E + +++++I
Sbjct: 55 GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIR 114
Query: 121 TRSKEILKLLELPPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
E L+ + L A LSGG ++R++ A +L +P+LL+ DEPT GLDPI S +
Sbjct: 115 EIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174
Query: 180 IWD---RLKEMALNGKTIIITTHYIEEA 204
I D LK+ G T I+ TH ++ A
Sbjct: 175 IDDLIRSLKKE--LGLTSIMVTHDLDTA 200
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 137 bits (348), Expect = 3e-38
Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 15/229 (6%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
K ++ + + K G+ + ++L++ + + LLGPSGCGKTTLL I G +G I
Sbjct: 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 77 KLSFRQISD-------IGYMPQELALHGELSIRETFRY-YGYMFDMTDDQIETRSKEILK 128
L I+D IG + Q AL +++ E + + +I+ R +E L+
Sbjct: 63 LLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALE 122
Query: 129 LLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L+ L A + LSGGQQ+R++ A +L+ PK+L+LDEP LD L + + LKE+
Sbjct: 123 LVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL 182
Query: 188 ALN-GKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
G T + TH EEA + I +M D GR+ E + E
Sbjct: 183 QRELGITFVYVTHDQEEALAMSDRIAVMND----GRIEQVGTPEEIYER 227
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 132 bits (334), Expect = 1e-37
Identities = 69/213 (32%), Positives = 119/213 (55%), Gaps = 24/213 (11%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-------- 78
K+ G L G++L + +YGLLGP+G GKTTL+ + +GTI++
Sbjct: 8 KRYGKKRALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ 66
Query: 79 --SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-A 135
R+ IGY+PQE ++ ++RE Y ++ + +++ R E+L+L+ L A
Sbjct: 67 PQKLRRR--IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA 124
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR--LKEMALNGKT 193
KK +G+LSGG +RR+ A +L+ +P +LI+DEPT GLDP + I R L E+ + +
Sbjct: 125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP--EERIRFRNLLSELGED-RI 181
Query: 194 IIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225
+I++TH +E+ + + + ++ G+LV
Sbjct: 182 VILSTHIVEDVESLCNQVAVLNK----GKLVFE 210
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 134 bits (338), Expect = 2e-37
Identities = 66/220 (30%), Positives = 117/220 (53%), Gaps = 11/220 (5%)
Query: 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI- 76
++ + K G+ + ++ VP +I+GLLGP+G GKTT I+G G I
Sbjct: 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 77 ----KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
LS + IGY+P+E L+ ++++ + +Y + M +I+ + + L+ LE+
Sbjct: 61 WNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEI 120
Query: 133 PPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
K K + LS G Q++I F +++H P+LLILDEP GLDP+ +++ D + E+ G
Sbjct: 121 VGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180
Query: 192 KTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVES 230
TII ++H +E + + +++ G+ V + VE
Sbjct: 181 ATIIFSSHRMEHVEELCDRLLMLKK----GQTVLYGTVED 216
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 129 bits (327), Expect = 4e-37
Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 46/202 (22%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------- 76
K+ G VL ++LN+ +I LLGPSG GK+TLL CI G D+G+I
Sbjct: 8 KRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDL 67
Query: 77 -KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA 135
IG + Q+ AL L++ E
Sbjct: 68 EDELPPLRRRIGMVFQDFALFPHLTVLE-------------------------------- 95
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKTI 194
I LSGGQQ+R++ A +L +P +L+LDEPT LDPI + + LK + A G T+
Sbjct: 96 -NIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV 154
Query: 195 IITTHYIEEAKG-AHNIGLMRD 215
++ TH ++EA A + ++RD
Sbjct: 155 VLVTHDLDEAARLADRVVVLRD 176
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 133 bits (337), Expect = 4e-37
Identities = 85/288 (29%), Positives = 134/288 (46%), Gaps = 36/288 (12%)
Query: 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD 85
K+ GN + +NL + E + L+GPSG GKTT L I +G I + ISD
Sbjct: 8 SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67
Query: 86 ---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK 136
IGY+ Q++ L L++ E + ++I+ R+ E+L L+ L P++
Sbjct: 68 LDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSE 127
Query: 137 ---KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GK 192
+ LSGGQQ+R+ A +L +P +L++DEP LDPI + + + +KE+ GK
Sbjct: 128 YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGK 187
Query: 193 TIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDI------------VESLVEALEDAL 239
TI+ TH I+EA K A I +M G +V +D VE E L
Sbjct: 188 TIVFVTHDIDEALKLADRIAVMDA----GEIVQYDTPDEILANPANDFVEDFFGESERGL 243
Query: 240 RHGNVINKVDLVDGRGSIDEVLSRQCTVSVDVDRPAINEGDYVWTQLE 287
R ++++ D V E + + VDR A+ D++
Sbjct: 244 RLLSLVSVADAVR----RGEPADGEPLLEGFVDRDAL--SDFLARGRS 285
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 133 bits (335), Expect = 5e-37
Identities = 69/196 (35%), Positives = 112/196 (57%), Gaps = 9/196 (4%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
++ + K G+ VV+ L+ + + +GLLGP+G GK+T+ ++G + D G I +
Sbjct: 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63
Query: 79 SFRQI--------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
+ IG +PQ L E ++RE +G F M+ +IE +L+
Sbjct: 64 LGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFA 123
Query: 131 ELPPAKKI-VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
L + V LSGG +RR++ A +L+++P+LLILDEPT GLDP +IW+RL+ +
Sbjct: 124 RLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 183
Query: 190 NGKTIIITTHYIEEAK 205
GKTI++TTH++EEA+
Sbjct: 184 RGKTILLTTHFMEEAE 199
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 130 bits (330), Expect = 6e-37
Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 22/221 (9%)
Query: 13 IIEVKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+IE+K+ V+ Y G V LK +NL + + ++GPSG GK+TLLN + G +
Sbjct: 1 MIELKN---VSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP 57
Query: 72 DAGTIKL--------------SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117
+G + + R+ IG++ Q L +L++ E + +
Sbjct: 58 TSGEVLINGKDLTKLSEKELAKLRR-KKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG 116
Query: 118 QIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
+ + ++E+L++L L KK LSGGQQ+R++ A +L++NPK+++ DEPT LD
Sbjct: 117 RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 176 LSQIIWDRLKEMA-LNGKTIIITTHYIEEAKGAHNIGLMRD 215
++ + + L+E+ GKTII+ TH E AK A + ++D
Sbjct: 177 TAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKD 217
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 131 bits (332), Expect = 5e-36
Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 14/217 (6%)
Query: 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77
+ + + K G+ VLK +NL++ + + LLGPSGCGK+TLL I G +G I
Sbjct: 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 78 LSFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
+ R ++D I + Q AL+ +++ E + + + +I+ R KE+ KLL
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL 121
Query: 131 ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-A 188
L + LSGGQ++R++ A +L+ PK+ +LDEP LD L ++ +K++
Sbjct: 122 GLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181
Query: 189 LNGKTIIITTHYIEEAK-GAHNIGLMRDDQYIGRLVH 224
G T I TH EA A I +M D GR+
Sbjct: 182 RLGTTTIYVTHDQVEAMTLADRIVVMND----GRIQQ 214
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 128 bits (325), Expect = 8e-36
Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 28/211 (13%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IEV+ K G+ V+L G++L+VP +I +LG SG GK+TLL I+G D
Sbjct: 8 LIEVRG------VTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61
Query: 73 AGTIKL---SFRQISD---------IGYMPQELALHGELSIRE--TFRYYGYMFDMTDDQ 118
G I + Q+S+ +G + Q+ AL L++ E F + + +
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT-KLPESL 120
Query: 119 IETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
I L+L+ L A LSGG ++R++ A ++ +P+LL LDEPT GLDPI
Sbjct: 121 IRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS 180
Query: 177 SQIIWDRLKEMALN---GKTIIITTHYIEEA 204
+ +I + ++E LN G T+I+ TH ++
Sbjct: 181 AGVIDELIRE--LNDALGLTVIMVTHDLDSL 209
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 128 bits (324), Expect = 1e-35
Identities = 63/226 (27%), Positives = 119/226 (52%), Gaps = 28/226 (12%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
++EV++ ++ Y G +L L+ ++P+ +I G+LGP+G GK+TLL C+ G
Sbjct: 2 MLEVEN---LSFGY---GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK 55
Query: 73 AGTIKLSFRQISD---------IGYMPQELALHGELSIRET-----FRYYGYMFDMT--D 116
+G + L + I+ + Y+PQ + L++ E + + G + D
Sbjct: 56 SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKED 115
Query: 117 DQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
++I + E+L L L A + V LSGG+++R+ A +L +L+LDEPT LD I
Sbjct: 116 EEIVEEALELLGLEHL--ADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLD-IA 172
Query: 177 SQI-IWDRLKEMALN-GKTIIITTHYIEEA-KGAHNIGLMRDDQYI 219
QI + + L+++ G T+++ H + A + A ++ L++D + +
Sbjct: 173 HQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV 218
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 126 bits (319), Expect = 1e-35
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 41/196 (20%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR--N 69
+ V + + + K++ LK ++ ++ ++GPSG GK+TLLN + GR
Sbjct: 7 RNLTVTVKSSPSKSGKQL-----LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG 61
Query: 70 TLDAGTIKLSFRQISD------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123
+G + ++ R + IGY+PQ+ LH L++RET +
Sbjct: 62 LGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMF---------------- 105
Query: 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
A K+ G LSGG+++R+S A+ L+ NP LL LDEPT GLD + +
Sbjct: 106 -----------AAKLRG-LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSL 153
Query: 184 LKEMALNGKTIIITTH 199
L+ +A G+TII + H
Sbjct: 154 LRRLADTGRTIICSIH 169
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 126 bits (318), Expect = 3e-35
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 41/214 (19%)
Query: 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG 74
E+K+ ++ +Y G L ++L + + + ++GP+G GK+TLL + G +G
Sbjct: 1 ELKN---LSFSYPD-GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG 56
Query: 75 TIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ---------------- 118
+ + + ++ LS++E R G +F DDQ
Sbjct: 57 EVLVDGKDLTK-------------LSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN 103
Query: 119 -------IETRSKEILKLLEL-PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
IE R +E L+L+ L + LSGGQ++R++ A L +P +L+LDEPT
Sbjct: 104 LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163
Query: 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204
GLDP + + + LK++ GKTIII TH ++
Sbjct: 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLL 197
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 126 bits (318), Expect = 3e-35
Identities = 60/199 (30%), Positives = 106/199 (53%), Gaps = 12/199 (6%)
Query: 14 IEVKHSVAVTSAY-KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+EV++ V+ Y G L+ ++L+V E + L+GPSGCGK+TLL I G
Sbjct: 1 LEVRN---VSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT 57
Query: 73 AGTIKLSFRQIS----DIGYMPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEIL 127
+G + + ++ D GY+ Q+ AL L++ + G + + R++E+L
Sbjct: 58 SGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA-LGLELQGVPKAEARERAEELL 116
Query: 128 KLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
+L+ L LSGG ++R++ A +L +P +L+LDEP LD + + + + L +
Sbjct: 117 ELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176
Query: 187 MAL-NGKTIIITTHYIEEA 204
+ GKT+++ TH I+EA
Sbjct: 177 IWRETGKTVLLVTHDIDEA 195
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 124 bits (315), Expect = 8e-35
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 23/187 (12%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
G H VL+ ++ V + ++GP+G GK+TLL I+G +G+I++ + +
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR 69
Query: 86 IGYMPQ-------------ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
IGY+PQ ++ L G + FR D + E + L EL
Sbjct: 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLS----KADKAKVDEALERVGLSEL 125
Query: 133 PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
A + +G LSGGQQ+R+ A +L+ +P LL+LDEP G+DP + I++ L+E+ G
Sbjct: 126 --ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM 183
Query: 193 TIIITTH 199
TI++ TH
Sbjct: 184 TILVVTH 190
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 125 bits (317), Expect = 1e-34
Identities = 73/262 (27%), Positives = 125/262 (47%), Gaps = 33/262 (12%)
Query: 10 DPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69
+IEV++ +T +Y GN VL+ ++L+V + +I L+GP+G GK+TLL I+G
Sbjct: 1 MMPMIEVEN---LTVSY---GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL 54
Query: 70 TLDAGTIKLSFRQISD------IGYMPQELALHGELSIR-----ETFRYY-GYMFDMTDD 117
+G IK+ + + IGY+PQ+ ++ I RY F +
Sbjct: 55 KPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNK 114
Query: 118 QIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
+ + + E L+ + + + +G LSGGQ++R+ A +L NP LL+LDEP G+D
Sbjct: 115 KDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG 174
Query: 177 SQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD--DQYI---GRLVHHDIVESL 231
+ I+D LKE+ GKT+++ T H++GL+ D+ I L+ E +
Sbjct: 175 QKEIYDLLKELRQEGKTVLMVT---------HDLGLVMAYFDRVICLNRHLIASGPPEEV 225
Query: 232 VEALEDALRHGNVINKVDLVDG 253
+ G +
Sbjct: 226 LTEENLEKAFGGSLAHALAGYR 247
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 125 bits (316), Expect = 1e-34
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 6/194 (3%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
+ + K G VL+ +NL+V + + +LGPSGCGK+TLL I G +G +
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 77 KLSFRQIS----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
L R ++ DIGY+ QE AL L++ + + + + R+KE+L+L+ L
Sbjct: 61 LLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGL 120
Query: 133 PP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-N 190
K LSGG ++R++ A +L PKLL+LDEP LD + + + D L +
Sbjct: 121 AGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET 180
Query: 191 GKTIIITTHYIEEA 204
KT+++ TH ++EA
Sbjct: 181 RKTVLLVTHDVDEA 194
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 124 bits (313), Expect = 2e-34
Identities = 54/194 (27%), Positives = 106/194 (54%), Gaps = 10/194 (5%)
Query: 21 AVTSAYKKIGNHVV-LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
A+T ++ + V + G++ V ++ GLLGP+G GKTT L + G DAG +
Sbjct: 6 ALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVD 65
Query: 80 -FRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
F + + +G++ L+ L+ RE Y+ ++ + D++ R +E+ L
Sbjct: 66 GFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG 125
Query: 132 LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190
+ + VG S G +++++ A +L+H+P +L+LDEPT GLD + ++ + + ++++
Sbjct: 126 MEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL 185
Query: 191 GKTIIITTHYIEEA 204
GK I+ +TH ++E
Sbjct: 186 GKCILFSTHIMQEV 199
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 121 bits (305), Expect = 2e-33
Identities = 62/185 (33%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----SFR 81
K+ G + ++L VP+N +YGLLGP+G GK+TLL I G +G I + +
Sbjct: 8 KRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK 67
Query: 82 QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-PAKKIVG 140
+ IG + + L+ L+ RE + + + + D +I+ E+L +++L KK
Sbjct: 68 DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRID----EVLNIVDLTNTGKKKAK 123
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
S G ++R+ A++LL++PKLLILDEPT GLDPI Q + + ++ G T+I+++H
Sbjct: 124 QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHI 183
Query: 201 IEEAK 205
+ E +
Sbjct: 184 LSEVQ 188
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 119 bits (300), Expect = 2e-32
Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 9/194 (4%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ + + K G V L G++L++ E + + LLGPSGCGKTTLL I G T +G I L
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 80 FRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
+ I++ + + Q AL L++ E + + + +I+ R E L L++L
Sbjct: 61 GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL 120
Query: 133 PP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN- 190
A + LSGGQQ+R++ A +L++ PK+L+LDEP LD L + + LK +
Sbjct: 121 EGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL 180
Query: 191 GKTIIITTHYIEEA 204
G T + TH EEA
Sbjct: 181 GITFVFVTHDQEEA 194
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 118 bits (299), Expect = 2e-32
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 34/235 (14%)
Query: 13 IIEVKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
++EVK+ ++ ++ G V L ++ ++ + + GL+G SG GK+TL I+G
Sbjct: 1 LLEVKN---LSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP 57
Query: 72 DAGTIKLSFRQIS------------DIGYMPQE--LALH-----GELSIRETFRYYGYMF 112
+G+I + + +I + Q+ +L+ GE I E R +G +
Sbjct: 58 TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGE-QIAEPLRIHGKLS 116
Query: 113 DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
+ + +L + LP + LSGGQ++R++ A +L NPKLLI DEPT
Sbjct: 117 K--KEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTS 174
Query: 171 GLDPILSQIIWDRLKEM-ALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223
LD + I D LK++ G T++ TH + A + +M Y G++V
Sbjct: 175 ALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM----YAGKIV 225
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 118 bits (297), Expect = 3e-32
Identities = 68/211 (32%), Positives = 97/211 (45%), Gaps = 29/211 (13%)
Query: 35 LKGLNLNV----PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD----- 85
L L + E G+ G SG GK+TLL CI G D GTI L+ + D
Sbjct: 10 LPDFTLKIDFDLNEEVT-GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKI 68
Query: 86 --------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AK 136
IG + Q+ AL L++RE + G + + E+L LL L
Sbjct: 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAF-GLKR-KRNREDRISVDELLDLLGLDHLLN 126
Query: 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA--LNGKTI 194
+ LSGG+++R++ A +L P+LL+LDEP LD L + LK++ LN I
Sbjct: 127 RYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVI 186
Query: 195 IITTHYIEEA-KGAHNIGLMRDDQYIGRLVH 224
+ TH + EA A I +M D GRL +
Sbjct: 187 FV-THDLSEAEYLADRIVVMED----GRLQY 212
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 117 bits (297), Expect = 5e-32
Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 30/227 (13%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
+ + Y K +L G++L VPE +I LLG +G GKTTLL I+G +G+I+ R
Sbjct: 6 LNAGYGKS---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR 62
Query: 82 QISD----------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEIL-KLL 130
I+ IGY+P+ + EL++ E Y + K L ++
Sbjct: 63 DITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR------RAKRKARLERVY 116
Query: 131 ELPPAKK-----IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
EL P K + G LSGG+Q+ ++ A +L+ PKLL+LDEP+ GL P + + I++ ++
Sbjct: 117 ELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIR 176
Query: 186 EMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231
E+ G TI++ A A ++ GR+V L
Sbjct: 177 ELRDEGVTILLVEQNARFALEIADRAYVLER----GRVVLEGTAAEL 219
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 115 bits (292), Expect = 7e-32
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 51/211 (24%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IE K+ V+ +Y VLK ++L + + ++GPSG GK+TLL ++ +
Sbjct: 1 IEFKN---VSFSYPG-RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS 56
Query: 74 GTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
G I + + D I Y+PQ+ ++F T
Sbjct: 57 GEILIDGVDLRDLDLESLRKNIAYVPQD----------------PFLFSGT--------- 91
Query: 125 EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
I + + LSGGQ++RI+ A +LL +P +LILDE T LDP +I + L
Sbjct: 92 -IRENI-----------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 185 KEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215
+ +A GKT+I+ H + + A I ++ D
Sbjct: 140 RALA-KGKTVIVIAHRLSTIRDADRIIVLDD 169
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 115 bits (291), Expect = 1e-31
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 48/206 (23%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL--------SFR 81
G VL L+L++ +I G+LGP+G GK+TLL + G +G I L S +
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 82 QIS-DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVG 140
+++ I Y+PQ L L L L L A +
Sbjct: 70 ELARKIAYVPQALEL-------------------------------LGLAHL--ADRPFN 96
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTH 199
LSGG+++R+ A +L P +L+LDEPT LD + + L+ +A GKT+++ H
Sbjct: 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156
Query: 200 YIEEA-KGAHNIGLMRDDQYIGRLVH 224
+ A + A + L++D GR+V
Sbjct: 157 DLNLAARYADRVILLKD----GRIVA 178
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 116 bits (292), Expect = 1e-31
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 16/199 (8%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------- 76
KK G+ V+L LNL + + K+Y ++G SG GK+TLLN I D+G +
Sbjct: 6 KKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPL 65
Query: 77 ----KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
FR+ +GY+ Q AL ++ E ++ + + KE L+ + L
Sbjct: 66 NSKKASKFRR-EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL 124
Query: 133 PPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
K+ + LSGG+Q+R++ A ++L P L++ DEPT LDP + D L E+ G
Sbjct: 125 NLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEG 184
Query: 192 KTIIITTHYIEEAKGAHNI 210
KTIII TH E AK A +
Sbjct: 185 KTIIIVTHDPEVAKQADRV 203
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 117 bits (295), Expect = 1e-31
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 31/216 (14%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IEV++ ++ Y LK ++L++ + L+GPSG GK+TLL C+ G +
Sbjct: 1 IEVEN---LSKTYP--NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS 55
Query: 74 GTIKL-----------SFRQI-SDIGYMPQELA-----------LHGELSIRETFRYYGY 110
G++ + + RQ+ IG + Q+ L G L R T+R
Sbjct: 56 GSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFG 115
Query: 111 MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
+F + Q + E + LL+ A + LSGGQQ+R++ A +L+ PKL++ DEP
Sbjct: 116 LFPKEEKQRALAALERVGLLDK--AYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173
Query: 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAK 205
LDP S+ + D LK + G T+I++ H ++ A+
Sbjct: 174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAR 209
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 115 bits (290), Expect = 3e-31
Identities = 69/208 (33%), Positives = 106/208 (50%), Gaps = 21/208 (10%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K G VL ++L+V + +IYG LGP+G GKTT + I+G D+G I +
Sbjct: 8 KTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN 67
Query: 86 ------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKI 138
IG + + + L+ RE R + + +I+ E+L ++ L AKK
Sbjct: 68 IEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID----EVLDVVGLKDSAKKK 123
Query: 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR--LKEMALNGKTIII 196
V S G ++R+ A++LL NP LLILDEPT GLDP I R + + G T++I
Sbjct: 124 VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD--GIKELRELILSLRDQGITVLI 181
Query: 197 TTHYIEE-AKGAHNIGLMRDDQYIGRLV 223
++H + E K A IG++ G+L+
Sbjct: 182 SSHLLSEIQKVADRIGIINK----GKLI 205
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 115 bits (291), Expect = 3e-31
Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 17/194 (8%)
Query: 22 VTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA---GTIK 77
V K + +L ++L+V ++ +LG SG GKTTLL+ I GR G I
Sbjct: 9 VGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQIL 68
Query: 78 LSFRQIS------DIGYMPQELALHGELSIRETFRYYGYMFDM---TDDQIETRSKEILK 128
+ + + Y+ Q+ L L++RET Y + + + D I + E +
Sbjct: 69 FNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTA-ILRLPRKSSDAIRKKRVEDVL 127
Query: 129 LLEL---PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
L +L +V +SGG++RR+S AV LL +PK+LILDEPT GLD + + L
Sbjct: 128 LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 186 EMALNGKTIIITTH 199
++A + +I+T H
Sbjct: 188 QLARRNRIVILTIH 201
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 115 bits (290), Expect = 7e-31
Identities = 71/259 (27%), Positives = 117/259 (45%), Gaps = 57/259 (22%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
K+ G V L ++ +V +I+GL+GP+G GKTTL N I G +G++ I+
Sbjct: 8 KRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT-- 65
Query: 87 GYMPQELALHG------------ELSIRET-----FRYYGYMFDM-----TDDQIETRSK 124
G P E+A G EL++ E G + + + R++
Sbjct: 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAE 125
Query: 125 EILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
E+L+ + L A + G LS GQQRR+ A +L +PKLL+LDEP GL+P ++ + +
Sbjct: 126 ELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL 185
Query: 184 LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGN 243
++E+ G T+++ +E H++ ++ L V L G
Sbjct: 186 IRELRERGITVLL----VE-----HDMDVVM------SLADRVTV----------LDQGR 220
Query: 244 VINKVDLVDGRGSIDEVLS 262
VI G+ DEV +
Sbjct: 221 VI-------AEGTPDEVRN 232
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 116 bits (292), Expect = 9e-31
Identities = 70/232 (30%), Positives = 126/232 (54%), Gaps = 27/232 (11%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK- 77
S+ V+S K G L ++ + +I G LGP+G GK+T + I G D+G+++
Sbjct: 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61
Query: 78 ---------LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
++ IGY+P+ L+ ++ +RE ++ ++ M ++ R +E+++
Sbjct: 62 CGEDVLQNPKEVQRN--IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIE 119
Query: 129 LLEL-PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR--LK 185
L+ L P K +G LS G ++R+ A +L+H+PK+LILDEPT GLDP +Q++ R +K
Sbjct: 120 LVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDP--NQLVEIRNVIK 177
Query: 186 EMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYI---GRLVHHDIVESLVEA 234
+ + KTII++TH ++E + + D I G++V ++ L A
Sbjct: 178 NIGKD-KTIILSTHIMQEVEA------ICDRVIIINKGKIVADKKLDELSAA 222
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 113 bits (286), Expect = 2e-30
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 11/188 (5%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K+ G V+ G++L+V + +I GLLGP+G GKTT IVG D+G I L + I+
Sbjct: 8 KRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKL 67
Query: 86 ---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-A 135
IGY+PQE ++ +L++ E + ++ + E + +E+L+ +
Sbjct: 68 PMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR 127
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
K +LSGG++RR+ A +L NPK L+LDEP G+DPI Q I +K + G ++
Sbjct: 128 KSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVL 187
Query: 196 ITTHYIEE 203
IT H + E
Sbjct: 188 ITDHNVRE 195
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 113 bits (286), Expect = 2e-30
Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 35/231 (15%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAG 74
+ + G+ LK ++L++P+ +I L+GPSGCGK+TLL + N L D G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 75 TIKLSFRQISDIGYMPQEL------------ALHGELSIRETFRY----YGYMFDMTDDQ 118
+ L + I D+ EL G SI + Y +G ++
Sbjct: 61 EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPG--SIYDNVAYGLRLHGI---KLKEE 115
Query: 119 IETRSKEILKLLELPPAKK---IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
++ R +E L+ L K LSGGQQ+R+ A +L + P++L+LDEPT LDPI
Sbjct: 116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175
Query: 176 LSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225
+ I + + E+ TI+I TH +++A A + GRLV
Sbjct: 176 STAKIEELIAELK-KEYTIVIVTHNMQQAARVADRTAFL----LNGRLVEF 221
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 113 bits (285), Expect = 3e-30
Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 29/230 (12%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-- 71
IE ++ VT Y G + LNL + + + L+GPSG GKTT + I N L
Sbjct: 1 IEFEN---VTKRYG--GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI---NRLIE 52
Query: 72 -DAGTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121
+G I + I + IGY+ Q++ L +++ E + ++I
Sbjct: 53 PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE 112
Query: 122 RSKEILKLLELPPAK---KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
R+ E+L L+ L PA+ + LSGGQQ+R+ A +L +P LL++DEP LDPI
Sbjct: 113 RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172
Query: 179 IIWDRLKEM-ALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHD 226
+ + K + GKTI+ TH I+EA + A I +M++ G +V
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKN----GEIVQVG 218
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 119 bits (300), Expect = 4e-30
Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 36/224 (16%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
V+ Y VL+ L+L +P + ++G SG GK+TLL ++G G I L
Sbjct: 477 VSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535
Query: 82 QISD---------IGYMPQELAL-HGELSIRETFRYYGYMFDMTDDQIETRSKEILKL-- 129
++D +GY+ Q+ L G SIRE + TD++I E +L
Sbjct: 536 DLNDIDLASLRRQVGYVLQDPFLFSG--SIRENIA--LGNPEATDEEI----IEAAQLAG 587
Query: 130 -----LELPPA-KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
LP VG LSGGQ++R++ A +LL PK+L+LDE T LDP I
Sbjct: 588 AHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAI 647
Query: 180 IWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
I L ++ L G+T+II H + + A I ++ G++V
Sbjct: 648 ILQNLLQI-LQGRTVIIIAHRLSTIRSADRIIVLDQ----GKIV 686
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 112 bits (283), Expect = 9e-30
Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 31/217 (14%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IEVK+ ++ Y G H LK +NL + + ++ ++GPSG GK+TLL + G
Sbjct: 3 MIEVKN---LSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT 57
Query: 73 AGTIKLSFRQIS------------DIGYMPQELAL-----------HGELSIRETFRYYG 109
+G I + QI+ DIG + Q+ L G L T+R
Sbjct: 58 SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLF 117
Query: 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169
+F D + E + +L+ A + LSGGQQ+R++ A +L+ PK+++ DEP
Sbjct: 118 GLFSKEDKAQALDALERVGILDK--AYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175
Query: 170 VGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAK 205
LDP ++ + D LK++ G T+I+ H ++ AK
Sbjct: 176 ASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAK 212
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 114 bits (287), Expect = 1e-29
Identities = 72/191 (37%), Positives = 100/191 (52%), Gaps = 17/191 (8%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-- 84
K+ G LK ++L+V + + LLGPSGCGKTTLL I G AGTI R I+
Sbjct: 12 KRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL 71
Query: 85 -----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK-KI 138
D G + Q AL L++ + Y M ++ R E+L L+ LP ++ K
Sbjct: 72 PPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY 131
Query: 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK-EM-ALN---GKT 193
G LSGGQQ+R++ A +L +P LL+LDEP LD + + L+ E+ L G T
Sbjct: 132 PGQLSGGQQQRVALARALATSPGLLLLDEPLSALD----ARVREHLRTEIRQLQRRLGVT 187
Query: 194 IIITTHYIEEA 204
I+ TH EEA
Sbjct: 188 TIMVTHDQEEA 198
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 111 bits (279), Expect = 2e-29
Identities = 59/196 (30%), Positives = 105/196 (53%), Gaps = 10/196 (5%)
Query: 20 VAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
+ VT K G+ V ++ ++ E +I GLLG +G GKTTLL I D+G + +
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61
Query: 79 -SFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
+ D IG + E L+ L+ RE +Y+ + ++ +I+ R E+ K L
Sbjct: 62 DGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL 121
Query: 131 ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+L + VG S G +++++ A +L+H+P +L+LDEPT GLD + D +K++
Sbjct: 122 QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN 181
Query: 190 NGKTIIITTHYIEEAK 205
G+ +I ++H ++E +
Sbjct: 182 EGRAVIFSSHIMQEVE 197
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 109 bits (275), Expect = 9e-29
Identities = 62/200 (31%), Positives = 91/200 (45%), Gaps = 26/200 (13%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
LK +NLN+ + ++GPSG GK+TLL CI +G+I L I+
Sbjct: 13 NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGK 72
Query: 86 --------IGYMPQELA-----------LHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126
IG + Q LHG L + T+R F D + + E
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALER 132
Query: 127 LKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
+ L + A + LSGGQQ+R++ A +L P L++ DEP LDP S+ + D LK
Sbjct: 133 VGLADK--AYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Query: 187 MALN-GKTIIITTHYIEEAK 205
+ G T+II H ++ AK
Sbjct: 191 INKEDGITVIINLHQVDLAK 210
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 108 bits (272), Expect = 3e-28
Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 37/205 (18%)
Query: 25 AYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS 84
+++ G LK ++L + + + L+GP+G GK+TLL + G +G + + S
Sbjct: 10 SFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS 69
Query: 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ-----------------------IET 121
E S+ E + G +F DDQ IE
Sbjct: 70 S------------EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEE 117
Query: 122 RSKEILKLLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
R E L+L+ L + LSGGQ++R++ A L P++L+LDEPT GLDP + +
Sbjct: 118 RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 181 WDRLKEMAL-NGKTIIITTHYIEEA 204
+ LK++ GKTIII TH +E
Sbjct: 178 LELLKKLKEEGGKTIIIVTHDLELV 202
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 109 bits (274), Expect = 5e-28
Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 40/233 (17%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG-----RNTLDAGTI--------KLSF 80
+ G++ + + +I G++G SG GK+ L I+G + G I LS
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 81 RQI-----SDIGYMPQE--LALH-----GELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
+++ +I + Q+ +L+ G+ I E R +G ++ + + R+ E+L+
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQ-IAEVLRLHGKG--LSKKEAKERAIELLE 136
Query: 129 LLELPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP-ILSQIIWDR 183
L+ +P ++ + + LSGG ++R+ A++L NPKLLI DEPT LD + +QI+ D
Sbjct: 137 LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQIL-DL 195
Query: 184 LKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEA 234
LKE+ G +I+ TH + A + +M Y GR+V VE + +
Sbjct: 196 LKELQREKGTALILITHDLGVVAEIADRVAVM----YAGRIVEEGPVEEIFKN 244
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 112 bits (282), Expect = 6e-28
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLD---AGTIKLS--------FRQISDIGYMPQELALHGE 98
++G SG GKTTL+N + R+ +G++ L+ R IS Y+ Q+
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAIS--AYVQQDDLFIPT 113
Query: 99 LSIRETFRYYGYMFDM----TDDQIETRSKEILKLLELPP-AKKIVGA------LSGGQQ 147
L++RE + M T + R E+L+ L L A +G LSGG++
Sbjct: 114 LTVREHL-MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGER 172
Query: 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+R++FA LL +P LL DEPT GLD ++ + LK +A GKTII T H
Sbjct: 173 KRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 106 bits (268), Expect = 1e-27
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------- 84
L ++L + + G++G SG GK+TL + G +G+I L + ++
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81
Query: 85 -DIGYMPQ--ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIV 139
+ + Q +L+ ++ + + + R E+L + LPP +
Sbjct: 82 RPVQMVFQDPYSSLNPRRTVGRILS--EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP 139
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITT 198
LSGGQ++RI+ A +L+ PKLLILDEPT LD + I + L E+ G T + +
Sbjct: 140 HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFIS 199
Query: 199 H 199
H
Sbjct: 200 H 200
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 105 bits (265), Expect = 2e-27
Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 21/206 (10%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IE+K+ +K G+ VLKG++L V + ++ ++GPSG GK+TLL CI D+
Sbjct: 1 IEIKN------LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS 54
Query: 74 GTIKLSFRQISD-----------IGYMPQELALHGELSIRETFRYYGYM--FDMTDDQIE 120
GTI + +++D +G + Q+ L L++ E + M+ + E
Sbjct: 55 GTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITL-APIKVKGMSKAEAE 113
Query: 121 TRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
R+ E+L+ + L A LSGGQQ+R++ A +L NPK+++ DEPT LDP L
Sbjct: 114 ERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE 173
Query: 180 IWDRLKEMALNGKTIIITTHYIEEAK 205
+ D +K++A G T+++ TH + A+
Sbjct: 174 VLDVMKDLAEEGMTMVVVTHEMGFAR 199
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 105 bits (263), Expect = 2e-27
Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 13/195 (6%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD------IG 87
+L L+L++ +I L G +G GKTTL + G +G+I L+ + I IG
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 88 YMPQELALH-GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-PPAKKIVGALSGG 145
Y+ Q++ S+RE D E +LK L+L ++ +LSGG
Sbjct: 75 YVMQDVDYQLFTDSVREELLL---GLKELDAGNEQAE-TVLKDLDLYALKERHPLSLSGG 130
Query: 146 QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE-EA 204
Q++R++ A +LL LLI DEPT GLD + + + ++E+A GK +I+ TH E A
Sbjct: 131 QKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLA 190
Query: 205 KGAHNIGLMRDDQYI 219
K + L+ + +
Sbjct: 191 KVCDRVLLLANGAIV 205
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 105 bits (263), Expect = 2e-27
Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
V + + K+ GN L LNL++ + + LLGPSGCGKTT L I G +G I +
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 80 FRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
R ++D I + Q AL+ +++ + + + + D+I+ R +E+ +LL++
Sbjct: 61 GRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI 120
Query: 133 PPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN- 190
+ LSGGQ++R++ +++ PK+ ++DEP LD L + LK +
Sbjct: 121 EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL 180
Query: 191 GKTIIITTH-YIEEAKGAHNIGLMRDDQ 217
G T I TH +E A I +M D Q
Sbjct: 181 GTTTIYVTHDQVEAMTMADRIAVMNDGQ 208
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 105 bits (265), Expect = 3e-27
Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 16/201 (7%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+EV ++ Y G L ++ V + LLGP+G GK+TL + +
Sbjct: 2 LEVAG---LSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQE 55
Query: 74 GTIKL---SFRQ-----ISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
G I + R+ ++ +G + Q+ L +LS+R+ RY+ + ++ + R E
Sbjct: 56 GQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAE 115
Query: 126 ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+L L L A V L+GG +RR+ A +LLH P LL+LDEPTVGLDP I +
Sbjct: 116 LLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHV 175
Query: 185 KEMALN-GKTIIITTHYIEEA 204
+ +A + G +++ TH ++E
Sbjct: 176 RALARDQGLSVLWATHLVDEI 196
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 105 bits (263), Expect = 5e-27
Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS-----------FR 81
LKG++ + + +I G +GP+G GKTT L + G +G ++++ R
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR 94
Query: 82 QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKI-VG 140
+I + Q+ L +L + ++F ++D+ + + R E+ +LL+L V
Sbjct: 95 RIGVV--FGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVR 152
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKTIIITTH 199
LS GQ+ R A +LLH P++L LDEPT+GLD + + I + LKE G T+++T+H
Sbjct: 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212
Query: 200 YI 201
Y+
Sbjct: 213 YM 214
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 109 bits (274), Expect = 7e-27
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 34/218 (15%)
Query: 13 IIEVKH-SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG---- 67
++EV++ +V + G ++ ++ V +I G++G SG GK+TL ++G
Sbjct: 5 LLEVENLTVEFATDG---GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61
Query: 68 RNTLDAGTIKLSFRQI-------------SDIGYMPQE-LALHGEL-----SIRETFRYY 108
+ +G + L R + I + Q+ + + IRE R +
Sbjct: 62 GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH 121
Query: 109 GYMFDMTDDQIETRSKEILKLLELPPAKKIVG---ALSGGQQRRISFAVSLLHNPKLLIL 165
G + + R+ E+L+ + LP ++ LSGG ++R+ A++L PKLLI
Sbjct: 122 G---KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIA 178
Query: 166 DEPTVGLDPILSQIIWDRLKE-MALNGKTIIITTHYIE 202
DEPT LD I D LK+ G ++ TH +
Sbjct: 179 DEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216
Score = 92.6 bits (231), Expect = 4e-21
Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 40/217 (18%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-------------SF 80
+ ++ ++ E + GL+G SG GK+TL + G +G+I
Sbjct: 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRL 365
Query: 81 RQISDIGYMPQELALHGELSIR----ETFRYYGYMFDMTDDQIETRSKEILKLLELPP-- 134
R+ + + +L+ +++ E R +G + + R E+L+L+ LPP
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG---GGSGAERRARVAELLELVGLPPEF 422
Query: 135 AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP-ILSQIIWDRLKEM-ALNGK 192
+ LSGGQ++R++ A +L PKLLILDEP LD + +Q++ + LK++ G
Sbjct: 423 LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVL-NLLKDLQEELGL 481
Query: 193 TIIITTH------YIEEAKGAHNIGLMRDDQYIGRLV 223
T + +H YI A + +M D GR+V
Sbjct: 482 TYLFISHDLAVVRYI-----ADRVAVMYD----GRIV 509
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 104 bits (262), Expect = 9e-27
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 13/190 (6%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K V+ ++L V +I GLLGP+G GKTT IVG D+G I L I+
Sbjct: 12 KSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKL 71
Query: 86 ---------IGYMPQELALHGELSIRETFRYYGYMF--DMTDDQIETRSKEILKLLELPP 134
IGY+PQE ++ +L++ + + D+ + + +L+ +
Sbjct: 72 PMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH 131
Query: 135 -AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193
+LSGG++RR+ A +L NPK ++LDEP G+DPI I +K + G
Sbjct: 132 LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIG 191
Query: 194 IIITTHYIEE 203
++IT H + E
Sbjct: 192 VLITDHNVRE 201
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 106 bits (268), Expect = 1e-26
Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+ + V + K V+ L+L + + LLGPSGCGKTT+L I G T
Sbjct: 7 QPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP 66
Query: 72 DAGTIKLSFRQISDIGYMP----------QELALHGELSIRETFRYYGYMFDMTDDQIET 121
D+G I L + I+ + P Q AL +++ E + M +I
Sbjct: 67 DSGRIMLDGQDITHV---PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP 123
Query: 122 RSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
R E L++++L A++ LSGGQQ+R++ A ++++ PK+L+LDE LD L + +
Sbjct: 124 RVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM 183
Query: 181 WDRLKEMALN---GKTIIITTHYIEEA 204
+ LK AL G T + TH EEA
Sbjct: 184 QNELK--ALQRKLGITFVFVTHDQEEA 208
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 108 bits (273), Expect = 1e-26
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 32/222 (14%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----------SFR 81
L LNL + ++ L+G SG GK+TLLN ++G G I++ ++R
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394
Query: 82 QISDIGYMPQE-LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKK--- 137
+ I ++ Q G +IRE D +D++I + LLE P
Sbjct: 395 K--QISWVSQNPYLFAG--TIRENILLARP--DASDEEIIAALDQA-GLLEFVPKPDGLD 447
Query: 138 -IVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
++G LSGGQ +R++ A +LL LL+LDEPT LD QII L+E+A K
Sbjct: 448 TVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-K 506
Query: 193 TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
T+++ TH +E+A A I ++ + GRLV E L E
Sbjct: 507 TVLVITHRLEDAADADRIVVLDN----GRLVEQGTHEELSEK 544
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 102 bits (256), Expect = 3e-26
Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 26/204 (12%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IE + V+ AY G L ++L++ + + L GPSG GKTTLL + G T
Sbjct: 1 MIEFHN---VSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS 55
Query: 73 AGTIKLSFRQISD------------IGYMPQELALHGELSIRE----TFRYYGYMFDMTD 116
G ++++ ++ IG + Q+ L + ++ E G +
Sbjct: 56 RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG----KKE 111
Query: 117 DQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
+I+ R L+ + L A LSGG+Q+R++ A +++++P LL+ DEPT LDP
Sbjct: 112 REIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPD 171
Query: 176 LSQIIWDRLKEMALNGKTIIITTH 199
LS+ I D LK + G T+I+ TH
Sbjct: 172 LSERILDLLKRLNKRGTTVIVATH 195
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 102 bits (257), Expect = 4e-26
Identities = 66/237 (27%), Positives = 114/237 (48%), Gaps = 31/237 (13%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
++EV++ +++ Y KI L+G++L V +I LLG +G GKTTLL I+G
Sbjct: 2 PMLEVEN---LSAGYGKI---QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP 55
Query: 72 DAGTIKLSFRQISD----------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121
+G I I+ I Y+P+ + L++ E Y E
Sbjct: 56 RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY----ARRDKEA 111
Query: 122 RSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
+ +++ ++ EL P + G LSGG+Q+ ++ A +L+ PKLL+LDEP+ GL P +
Sbjct: 112 QERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 171
Query: 177 SQIIWDRLKEMALN-GKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESL 231
+ I++ +KE+ G TI++ A + A ++ + GR+V L
Sbjct: 172 VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLEN----GRIVLSGTAAEL 224
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 106 bits (267), Expect = 5e-26
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 25/199 (12%)
Query: 7 KRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV 66
KR+ ++E ++ V+ Y G ++LK L+ + ++GP+G GK+TLL +
Sbjct: 315 KRLGKLVLEFEN---VSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA 369
Query: 67 GRNTLDAGTIKLSFRQISDIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
G +GT+K+ + IGY Q L + ++ E D E +
Sbjct: 370 GELGPLSGTVKV--GETVKIGYFDQHRDELDPDKTVLEELSEGF------PDGDEQEVRA 421
Query: 126 ILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
L +K VG LSGG++ R+ A LL P LL+LDEPT LD + +
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL--- 478
Query: 184 LKEMALN---GKTIIITTH 199
E AL G T+++ +H
Sbjct: 479 --EEALLDFEG-TVLLVSH 494
Score = 104 bits (261), Expect = 3e-25
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 39/210 (18%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
+ + G+ +L+ ++L + + GL+G +G GK+TLL + G D+G + +
Sbjct: 6 LENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV--TRP 63
Query: 82 QISDIGYMPQELALHGELSIRETF------------RYYGYMFDMTDD------------ 117
+ +GY+ QE L E ++ + + D
Sbjct: 64 KGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALL 123
Query: 118 ------QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171
+E R++E L L P + V +LSGG +RR++ A +LL P LL+LDEPT
Sbjct: 124 EELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNH 183
Query: 172 LDPILSQIIW--DRLKEMALNGKTIIITTH 199
LD L I W D LK G T+I+ +H
Sbjct: 184 LD--LESIEWLEDYLKR--YPG-TVIVVSH 208
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 102 bits (256), Expect = 7e-26
Identities = 63/202 (31%), Positives = 112/202 (55%), Gaps = 24/202 (11%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IE+K+ ++ ++ G+ VLKG++L+V + ++ ++GPSG GK+TLL C+ G D
Sbjct: 2 MIEIKN---LSKSF---GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD 55
Query: 73 AGTI---------KLSFRQI-SDIGYMPQELALHGELSIRE--TFRYYGYM--FDMTDDQ 118
+G+I K ++ +G + Q+ L L++ E T + ++ +
Sbjct: 56 SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVT---LAPVKVKKLSKAE 112
Query: 119 IETRSKEILKLLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
++ E+L+ + L A LSGGQQ+R++ A +L +PK+++ DEPT LDP L
Sbjct: 113 AREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELV 172
Query: 178 QIIWDRLKEMALNGKTIIITTH 199
+ D +K++A G T+II TH
Sbjct: 173 GEVLDVMKDLAEEGMTMIIVTH 194
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 103 bits (258), Expect = 1e-25
Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 16/210 (7%)
Query: 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS----FRQ----ISDIG 87
+ ++ +P+ +I G LG +G GK+T L + G +G ++++ FR+ + IG
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG 100
Query: 88 Y-MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGG 145
M Q+L L +L ++ ++++ DD+ R + ++L+L K V LS G
Sbjct: 101 LVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLG 160
Query: 146 QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKTIIITTHYIEE- 203
Q+ R A +LLH PK+L LDEPTVGLD I + LKE T+++TTH ++
Sbjct: 161 QRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDI 220
Query: 204 AKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
A + L+ DQ G+LV + L E
Sbjct: 221 ATLCDRVLLI--DQ--GQLVFDGTLAQLQE 246
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 105 bits (264), Expect = 1e-25
Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 25/205 (12%)
Query: 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80
V+ AY G L+ ++ VP + L+GPSG GK+TLLN ++G G+I ++
Sbjct: 326 GVSVAYP--GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG 383
Query: 81 RQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
++D I ++PQ L +I E R D +D +I + E L E
Sbjct: 384 VPLADADADSWRDQIAWVPQHPFLF-AGTIAENIRLA--RPDASDAEIR-EALERAGLDE 439
Query: 132 LPPA-----KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
A +G LSGGQ +R++ A + L + LL+LDEPT LD + +
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499
Query: 183 RLKEMALNGKTIIITTHYIEEAKGA 207
L+ +A G+T+++ TH + A A
Sbjct: 500 ALRALA-QGRTVLLVTHRLALAALA 523
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 100 bits (252), Expect = 3e-25
Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI--------KLSFR 81
G +L L+L++P KI L+GP+GCGK+TLL C T +GT+ LS R
Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72
Query: 82 QIS-DIGYMPQELALHGELSIRETFRY--------YGYMFDMTDDQIETRSKEILKLLEL 132
Q++ + +PQ +++RE Y +G + D+ ++ E ++ L
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSA-EDNARVNQAMEQTRINHL 131
Query: 133 PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI-IWDRLKEMALNG 191
A + + LSGGQ++R A+ L + +++LDEPT LD I Q+ + ++E+ G
Sbjct: 132 --ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD-INHQVELMRLMRELNTQG 188
Query: 192 KTIIITTHYIEEA 204
KT++ H + +A
Sbjct: 189 KTVVTVLHDLNQA 201
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 102 bits (256), Expect = 4e-25
Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 19/206 (9%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IE+++ V+ T G L ++L +P+ +I+G++G SG GK+TLL I
Sbjct: 1 MIELEN-VSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT 59
Query: 73 AGTIKLS--------------FRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ 118
+G++ + RQ IG + Q L ++ E + + + +
Sbjct: 60 SGSVFVDGQDLTALSEAELRQLRQ--KIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAE 117
Query: 119 IETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
I+ R E+L+L+ L A + LSGGQ++R++ A +L +NPK+L+ DE T LDP +
Sbjct: 118 IKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177
Query: 178 QIIWDRLKEM-ALNGKTIIITTHYIE 202
Q I + LK++ G TI++ TH +E
Sbjct: 178 QSILELLKDINRELGLTIVLITHEME 203
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 104 bits (261), Expect = 4e-25
Identities = 72/266 (27%), Positives = 123/266 (46%), Gaps = 35/266 (13%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI-----KLSFR 81
K G L G++L V +++ LLG +G GK+TL+ + G D+G I ++F
Sbjct: 16 KSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFS 75
Query: 82 QISD-----IGYMPQELALHGELSI-------RETFRYYGYMFDMTDDQIETRSKEILKL 129
D I + QEL+L LS+ RE R +G + + R++E+L
Sbjct: 76 SPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDR---KAMRRRARELLAR 132
Query: 130 LELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
L L +VG LS Q++ + A +L + ++LILDEPT L ++ ++D ++ +
Sbjct: 133 LGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK 192
Query: 189 LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG------RLVHHDIVESLV-EALEDALR 240
G II +H ++E A I ++RD + +G ++V +V LED
Sbjct: 193 AQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMVGRELEDLFP 252
Query: 241 H------GNVINKVDLVDGRGSIDEV 260
G + +V + G G + +V
Sbjct: 253 EPPEEGIGEPVLEVRNLSGGGKVRDV 278
Score = 87.6 bits (218), Expect = 2e-19
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 29/213 (13%)
Query: 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----SFRQISD-----IGYMP---QEL 93
I GL+G G+T L + G +G I L R D I Y+P +
Sbjct: 290 IAGLVG---AGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSE 346
Query: 94 ALHGELSIRETF------RYYGYMFDMTDDQIETR-SKEILKLLEL--PPAKKIVGALSG 144
L ++SI E R+ D + E ++ ++ L + P ++ +G LSG
Sbjct: 347 GLVLDMSIAENITLASLRRFSRRGL--IDRRKERALAERYIRRLRIKTPSPEQPIGTLSG 404
Query: 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204
G Q+++ A L +PK+LILDEPT G+D I+ ++E+A GK I++ + + E
Sbjct: 405 GNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPEL 464
Query: 205 KG-AHNIGLMRDDQYIGRLVHHDI-VESLVEAL 235
G + I +MR+ + +G L + E+++ A
Sbjct: 465 LGLSDRILVMREGRIVGELDREEATEEAIMAAA 497
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 101 bits (253), Expect = 6e-25
Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 14/195 (7%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-------IGYMPQELALHGELSIR 102
LLGPSGCGKTTLL + G D+G+I L +++ I + Q AL +++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161
E + M + +I+ R E L+L++L A + LSGGQQ+R++ A +L+ PK
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK 120
Query: 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYI 219
+L+LDEP LD L + LK + G T + TH EEA + I +MR
Sbjct: 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRK---- 176
Query: 220 GRLVHHDIVESLVEA 234
G++ E + E
Sbjct: 177 GKIAQIGTPEEIYEE 191
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 97.4 bits (243), Expect = 3e-24
Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 18/210 (8%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-- 84
K LK ++L V + +LGP+G GK+ LL I G D+G I L+ + I+
Sbjct: 7 SKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL 66
Query: 85 -----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL---ELPPAK 136
DI Y+PQ AL +++ + Y + +IE + EI ++L L K
Sbjct: 67 PPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK 126
Query: 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKTII 195
LSGG+Q+R++ A +L+ NPK+L+LDEP LD + + + LK++ G T++
Sbjct: 127 --PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVL 184
Query: 196 ITTHYIEEAKG-AHNIGLMRDDQYIGRLVH 224
TH EEA A + +M + G+L+
Sbjct: 185 HVTHDFEEAWALADKVAIMLN----GKLIQ 210
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 98.2 bits (245), Expect = 3e-24
Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 25/241 (10%)
Query: 9 IDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68
I + + + + + +L L+ V + + ++GP+G GKTTLL+ + G
Sbjct: 21 KRHPIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE 80
Query: 69 NTLDAGTIKLSFRQI----------SDIGYMPQELALH--GELSIRET-----FRYYGYM 111
+ +G + L R+ IG + EL ++R+ F G
Sbjct: 81 HPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIY 140
Query: 112 FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
+ + ++ +L+LL A + G+LS G+QRR+ A +L+ +P+LLILDEP
Sbjct: 141 QEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200
Query: 171 GLDPILSQIIWDRLKEMA--LNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDI 227
GLD I + + +RL+E+A ++ TH+ EE + L+++ G +V
Sbjct: 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKE----GEVVAQGK 256
Query: 228 V 228
+
Sbjct: 257 L 257
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 96.8 bits (242), Expect = 4e-24
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
+ + ++G LK ++ VP + GL+G +G GK+TLL + G D+GT+
Sbjct: 20 LKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79
Query: 77 KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK 136
+ R S +G + EL+ RE G + ++ +I+ + EI++ EL
Sbjct: 80 TVRGRVSSLLGLG---GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI 136
Query: 137 KI-VGALSGGQQRRISFAVSLLHNPKLLILDEPT-VGLDPILSQIIWDRLKEMALNGKTI 194
+ V S G + R++FA++ P +L++DE VG D + RL+E+ GKT+
Sbjct: 137 DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG-DAAFQEKCQRRLRELLKQGKTV 195
Query: 195 IITTH 199
I+ +H
Sbjct: 196 ILVSH 200
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 97.2 bits (243), Expect = 6e-24
Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 26/219 (11%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQI 83
G+ LK +NL++P+NK+ L+GPSGCGK+TLL C+ N L G + L + I
Sbjct: 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76
Query: 84 SDIGYMPQELALH-G---------ELSIRETFRYYGYMFDMTDDQIETRSKEILK---LL 130
D EL G +SI + Y + + D +++ + LK L
Sbjct: 77 YDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALW 136
Query: 131 ELPPAK--KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ + K LSGGQQ+R+ A +L P++L++DEPT LDPI + I + + E+
Sbjct: 137 DEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK 196
Query: 189 LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226
TI+I TH +++A + Y+G LV
Sbjct: 197 KK-YTIVIVTHNMQQAARVSDYTAFF----YLGELVEFG 230
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 96.6 bits (241), Expect = 6e-24
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 12/167 (7%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
S+ V + K+ G+ V L ++L++P ++ LLGPSG GKTTLL I G D+GTI
Sbjct: 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61
Query: 79 SFRQISD-------IGYMPQELALHGELSIRET----FRYYGYMFDMTDDQIETRSKEIL 127
+D +G++ Q AL +++ + R + +I + E+L
Sbjct: 62 GGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELL 121
Query: 128 KLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
KL++L A + LSGGQ++R++ A +L PK+L+LDEP LD
Sbjct: 122 KLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 96.8 bits (242), Expect = 7e-24
Identities = 73/214 (34%), Positives = 111/214 (51%), Gaps = 24/214 (11%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLN-------CIV 66
IE K+ V+ Y + +LKGL+L +P K L+G SGCGK+T+++
Sbjct: 1 IEFKN---VSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS 57
Query: 67 GRNTLDAGTIK-LSFRQISD-IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
G LD I+ L+ R + IG + QE L + +I E RY G D TD+++E +K
Sbjct: 58 GEILLDGVDIRDLNLRWLRSQIGLVSQEPVLF-DGTIAENIRY-G-KPDATDEEVEEAAK 114
Query: 125 --EILKLLELPPAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
I + P +VG LSGGQ++RI+ A +LL NPK+L+LDE T LD
Sbjct: 115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 177 SQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210
+++ + L A+ G+T I+ H + + A I
Sbjct: 175 EKLVQEALDR-AMKGRTTIVIAHRLSTIRNADLI 207
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 97.9 bits (244), Expect = 2e-23
Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 11/198 (5%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
K+ V + + K+ G++ V+ LNL + + + LLGPSGCGKTT+L + G G I
Sbjct: 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 77 --------KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
S +Q DI + Q AL +S+ E Y M + ++ + R KE L+
Sbjct: 64 FIDGEDVTHRSIQQ-RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALE 122
Query: 129 LLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L++L + V +SGGQQ+R++ A +L+ PK+L+ DEP LD L + + ++++E+
Sbjct: 123 LVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIREL 182
Query: 188 ALN-GKTIIITTHYIEEA 204
T + TH EA
Sbjct: 183 QQQFNITSLYVTHDQSEA 200
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 95.7 bits (239), Expect = 2e-23
Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 28/199 (14%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K+ G + ++L V +I GL+GP+G GKTTL N I G +GT+ R I+
Sbjct: 12 KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL 71
Query: 86 ---------IGYMPQ--------------ELALHGELSIRETFRYYGYMFDMTDDQIETR 122
I Q + H L + + + R
Sbjct: 72 PPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEE--REARER 129
Query: 123 SKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
++E+L+ + L A + G LS GQQRR+ A +L PKLL+LDEP GL+P ++ +
Sbjct: 130 ARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA 189
Query: 182 DRLKEMALN-GKTIIITTH 199
+ ++E+ G TI++ H
Sbjct: 190 ELIRELRDRGGVTILLIEH 208
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 99.3 bits (248), Expect = 2e-23
Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS---FRQISD--- 85
LK NL + + + +LG SG GK+TLL + G G+I L+ + +
Sbjct: 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410
Query: 86 ---IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA- 141
I + Q + L ++R+ R D +D+++ L+ + L K + A
Sbjct: 411 RETISVLTQRVHLFSG-TLRDNLRLANP--DASDEEL----WAALQQVGL--EKLLESAP 461
Query: 142 -------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
LSGG++RR++ A +LLH+ L +LDEPT GLDPI + + L E A
Sbjct: 462 DGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA 521
Query: 189 LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHH 225
GKT+++ TH + + I ++ + + I H
Sbjct: 522 -EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHA 557
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 97.4 bits (243), Expect = 3e-23
Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 23/223 (10%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
S+ + + K+ G L ++L++ ++ LLGPSG GK+TLL I G T DAG I+L
Sbjct: 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRL 61
Query: 79 SFRQISD----------IGYMPQELALHGELSIRE--TF--RYYGYMFDMTDDQIETRSK 124
+ R + D +G++ Q AL +++ + F + + +I R +
Sbjct: 62 NGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPS--EAEIRARVE 119
Query: 125 EILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
E+L+L++L A + LSGGQ++R++ A +L PK+L+LDEP LD + + +
Sbjct: 120 ELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 179
Query: 184 LKEM-ALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVH 224
L+++ G T + TH EEA + A + ++ GR+
Sbjct: 180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ----GRIEQ 218
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 94.6 bits (236), Expect = 3e-23
Identities = 64/207 (30%), Positives = 108/207 (52%), Gaps = 22/207 (10%)
Query: 13 IIEVKHSVAVTSAYK-KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+IE+K+ V+ + G LK ++L+VP+ +I+G++G SG GK+TL+ CI G
Sbjct: 1 MIELKN---VSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP 57
Query: 72 DAGTIKLSFRQISD------------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQI 119
+G++ + ++ IG + Q L ++ E + + +I
Sbjct: 58 TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI 117
Query: 120 ETRSKEILKLLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
E R E+L+L+ L A LSGGQ++R+ A +L +NPK+L+ DE T LDP +Q
Sbjct: 118 EERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 179 IIWDRLKEMALN---GKTIIITTHYIE 202
I L++ +N G TI++ TH +E
Sbjct: 178 SILALLRD--INRELGLTIVLITHEME 202
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 93.3 bits (232), Expect = 4e-23
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 35/195 (17%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VLKGLN ++ LLG +G GK+TLL + G +G + + +
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD--------- 57
Query: 94 ALHGELSIRETFRYYGYMFDMTDDQI-----------------------ETRSKEILKLL 130
+ + E + G +F DDQ+ E R +E L +
Sbjct: 58 --YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 131 ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
++ LSGG+++R++ A ++ P +L+LDEPT GLDP + + L+ +
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 190 NGKTIIITTHYIEEA 204
G T++I+TH ++ A
Sbjct: 176 EGMTVVISTHDVDLA 190
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 94.6 bits (235), Expect = 5e-23
Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 15/191 (7%)
Query: 25 AYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS 84
AYK G VV + ++L V +I GLLGP+G GKTT +VG DAG I + IS
Sbjct: 12 AYK--GRRVV-EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS 68
Query: 85 ----------DIGYMPQELALHGELSIRETFR-YYGYMFDMTDDQIETRSKEILKLLELP 133
IGY+PQE ++ LS+ + D++ +Q E R+ E+++ +
Sbjct: 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE 128
Query: 134 PAKKIVG-ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
+ +G +LSGG++RR+ A +L NPK ++LDEP G+DPI I ++ + +G
Sbjct: 129 HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188
Query: 193 TIIITTHYIEE 203
++IT H + E
Sbjct: 189 GVLITDHNVRE 199
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 94.5 bits (235), Expect = 5e-23
Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83
G H L + L+ PE + LLGPSG GK++LL + +GT+ ++
Sbjct: 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72
Query: 84 ---------SDIGYMPQELALHGELSIRETF-----RYYGYMFDMTDDQIETRSKEILKL 129
++G + Q+ L L+++E R G ++ DQ R++++LK
Sbjct: 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLG----LSKDQALARAEKLLKR 128
Query: 130 LELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
L L P A + LSGGQQ+R++ A +L+ P++L+ DEPT LDP ++ I +KE+A
Sbjct: 129 LRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 189 LNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRH 241
G T +I TH +E A K A + M + + + E EA ++ L H
Sbjct: 189 ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNYLSH 242
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 92.9 bits (232), Expect = 8e-23
Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 29/206 (14%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
+ LK +NL VP+ ++ ++GP G GK++LL+ ++G +G++ + I
Sbjct: 13 GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVP----GSI 68
Query: 87 GYMPQELALHGELSIRE--TFRYYGYMFDMTDDQIETRSKEILKL------LELPPA--K 136
Y+ QE + +IRE F G FD E R ++++K LE+ P
Sbjct: 69 AYVSQEPWIQNG-TIRENILF---GKPFD------EERYEKVIKACALEPDLEILPDGDL 118
Query: 137 KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR-LKEMALNG 191
+G LSGGQ++RIS A ++ + + +LD+P +D + + I++ + + LN
Sbjct: 119 TEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN 178
Query: 192 KTIIITTHYIEEAKGAHNIGLMRDDQ 217
KT I+ TH ++ A I ++ + +
Sbjct: 179 KTRILVTHQLQLLPHADQIVVLDNGR 204
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 93.3 bits (232), Expect = 1e-22
Identities = 60/194 (30%), Positives = 103/194 (53%), Gaps = 9/194 (4%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ + + K+ G+ L +NL VP + LLGPSG GK+TLL I G D+G I+L+
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 80 FRQIS-------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
+ + IG++ Q AL L++R+ + + +I+ R +E+L+L++L
Sbjct: 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL 120
Query: 133 PP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
+ LSGGQ++R++ A +L P++L+LDEP LD + + + L+++
Sbjct: 121 EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV 180
Query: 192 K-TIIITTHYIEEA 204
T + TH EEA
Sbjct: 181 HVTTVFVTHDQEEA 194
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 92.7 bits (231), Expect = 1e-22
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 15/191 (7%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI----- 76
V+ AY G L+ ++ ++P+ + L GPSG GK+TLL I G G I
Sbjct: 7 VSKAYP--GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGH 64
Query: 77 ---KLSFRQIS----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
+L R+I IG + Q+ L + ++ E + +I R E+L L
Sbjct: 65 DLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDL 124
Query: 130 LELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ L A+ + LSGG+Q+R++ A ++++ P +L+ DEPT LDP LS I +E+
Sbjct: 125 VGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184
Query: 189 LNGKTIIITTH 199
G T+++ TH
Sbjct: 185 RLGTTVLMATH 195
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 91.1 bits (227), Expect = 2e-22
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 30/187 (16%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYM 89
VL+ ++ ++ + ++GPSG GK+TL I+G +G ++L IS
Sbjct: 13 AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD-- 70
Query: 90 PQELALHGELSIRETFR-YYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQR 148
+ GY+ DD+ L A+ I LSGGQ++
Sbjct: 71 ------------PNELGDHVGYL--PQDDE----------LFSGSIAENI---LSGGQRQ 103
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAH 208
R+ A +L NP++L+LDEP LD + + + + G T I+ H E A
Sbjct: 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASAD 163
Query: 209 NIGLMRD 215
I ++ D
Sbjct: 164 RILVLED 170
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 93.3 bits (232), Expect = 7e-22
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 16/150 (10%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD------------ 85
+ +P + + G SG GKTTL+ I G D G I L+ R + D
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALS 143
IGY+ QE L LS+R R YG ++ + +++LL + ++ G LS
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLR-YGMKRARPSER-RISFERVIELLGIGHLLGRLPGRLS 133
Query: 144 GGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
GG+++R++ +LL +P+LL++DEP LD
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 91.4 bits (227), Expect = 1e-21
Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 6/177 (3%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYM 89
L+ ++L + ++ +LGPSGCGKTTLLN I G T G+I+L+ R+I ++ G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGGQQR 148
Q AL L++ + + + + Q + ++L L+ L A K + LSGG ++
Sbjct: 80 FQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQ 139
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEA 204
R+ A +L P+LL+LDEP LD + + + + L ++ GK +++ TH IEEA
Sbjct: 140 RVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEA 196
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 90.9 bits (226), Expect = 1e-21
Identities = 61/197 (30%), Positives = 100/197 (50%), Gaps = 23/197 (11%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------- 76
K G VL ++LN+ + ++ ++GPSG GK+TLL CI + +G +
Sbjct: 9 KHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDP 68
Query: 77 KLSFRQI-SDIGYMPQELALHGELSIRETFRYYGYMF------DMTDDQIETRSKEILKL 129
K+ R I + G + Q+ L L+ E MF + ++ E +++E+L
Sbjct: 69 KVDERLIRQEAGMVFQQFYLFPHLTALENV-----MFGPLRVRGASKEEAEKQARELLAK 123
Query: 130 LELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ L A LSGGQQ+R++ A +L PKL++ DEPT LDP L + ++++A
Sbjct: 124 VGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA 183
Query: 189 LNGKTIIITTHYIEEAK 205
G T++I TH I A+
Sbjct: 184 EEGMTMVIVTHEIGFAE 200
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 90.9 bits (226), Expect = 1e-21
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----DIGYM 89
L+ +NL + ++ +LGPSGCGKTTLLN I G G+I L + + + G +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGGQQR 148
Q L ++++ + + + Q + ++LK + L A K+ + LSGGQ++
Sbjct: 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQ 135
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-----NGKTIIITTHYIEE 203
R+ A +L NP+LL+LDEP LD ++++ + L GK +++ TH IEE
Sbjct: 136 RVGIARALAANPQLLLLDEPFGALDAFTR----EQMQTLLLKLWQETGKQVLLITHDIEE 191
Query: 204 A 204
A
Sbjct: 192 A 192
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 88.9 bits (221), Expect = 1e-21
Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 43/197 (21%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD----- 85
VLK L+L + + + LLG SG GK+TLL + G G I L +SD
Sbjct: 14 EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKAL 73
Query: 86 ---IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGAL 142
I + Q Y+FD T + L
Sbjct: 74 SSLISVLNQRP----------------YLFDTT----------LRNNLGRR--------F 99
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE 202
SGG+++R++ A LL + +++LDEPTVGLDPI + + + E+ L KT+I TH++
Sbjct: 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLT 158
Query: 203 EAKGAHNIGLMRDDQYI 219
+ I + + + I
Sbjct: 159 GIEHMDKILFLENGKII 175
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 94.3 bits (234), Expect = 2e-21
Identities = 55/178 (30%), Positives = 98/178 (55%), Gaps = 9/178 (5%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS----FRQISDI----GYM 89
L + V + +GLLG +G GKTT + G T+ +G ++ ISD+ GY
Sbjct: 1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYC 2017
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQR 148
PQ A+ L+ RE Y + + ++IE + ++ L L A ++ G SGG +R
Sbjct: 2018 PQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKR 2077
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206
++S A++L+ P L++LDEPT G+DP +++W+ + + G+ +++T+H +EE +
Sbjct: 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEA 2135
Score = 90.8 bits (225), Expect = 2e-20
Identities = 55/176 (31%), Positives = 97/176 (55%), Gaps = 10/176 (5%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYM 89
LN+ EN+I LG +G GKTT L+ + G +GT+ + + I +G
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMC 1008
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK-KIVGALSGGQQR 148
PQ L L++ E +Y + + ++ + + +L+ L + + LSGG QR
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQR 1068
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204
++S A++ + + K+++LDEPT G+DP + IWD L + +G+TII++TH+++EA
Sbjct: 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEA 1123
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 92.6 bits (230), Expect = 2e-21
Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 16/205 (7%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNC-------------IVGRNTLDA 73
KK G + +L + + +I+ ++G SG GK+T + I G N +
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 74 GTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP 133
++L + IG + Q+ AL ++I + + + + + ++ E+LKL+ L
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120
Query: 134 P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-G 191
+ LSGG Q+R+ A +L P +L++DE LDP++ + D LK++
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 192 KTIIITTHYIEEA-KGAHNIGLMRD 215
KTI+ TH ++EA + I +M+
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKA 205
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 90.0 bits (224), Expect = 2e-21
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
K + +K+ LK ++ + + + G++G +G GK+TLL I G +G +
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 77 KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK 136
K++ + I EL+ RE G + +T +I+ + EI++ EL
Sbjct: 85 KVTGKVAPLIELG---AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI 141
Query: 137 KI-VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
V S G R++F+V+ P +L+LDE D + +RL E+ KTI+
Sbjct: 142 DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIV 201
Query: 196 ITTHYIEEAK 205
+ +H + K
Sbjct: 202 LVSHDLGAIK 211
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 89.4 bits (222), Expect = 2e-21
Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
VT Y L G+N+++ + L+GPSG GK+TLL I +GTI+++ +
Sbjct: 6 VTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQ 63
Query: 82 QISD------------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
+SD IG + Q+ L + ++ E + + + +I R L+L
Sbjct: 64 DVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALEL 123
Query: 130 LELPPAKKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ L + + A LSGG+Q+R++ A +++++P +LI DEPT LDP + I + LK++
Sbjct: 124 VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN 183
Query: 189 LNGKTIIITTH 199
G T+++ TH
Sbjct: 184 KAGTTVVVATH 194
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 87.1 bits (217), Expect = 3e-21
Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 55/173 (31%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
K G ++LK ++L + GL+G +G GK+TLL I G D G + I
Sbjct: 8 KTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG--STVKI 65
Query: 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQ 146
GY Q LSGG+
Sbjct: 66 GYFEQ--------------------------------------------------LSGGE 75
Query: 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+ R++ A LL NP LL+LDEPT LD + + + LKE G T+I+ +H
Sbjct: 76 KMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPG-TVILVSH 125
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 89.2 bits (222), Expect = 8e-21
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 39/219 (17%)
Query: 12 EIIEVKHSV---AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68
++EVK+ V + K + G++ ++ E + GL+G SGCGK+TL I+G
Sbjct: 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
Query: 69 NTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
+G I + I+ ++ ++ R E+L+
Sbjct: 63 EEPTSGEILFEGKDITK----------------------------LSKEERRERVLELLE 94
Query: 129 LLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
+ LP + LSGGQ++RI A +L NPKL++ DEP LD + I + LK+
Sbjct: 95 KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKD 154
Query: 187 M-ALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223
+ G T + +H + + + I +M Y+G++V
Sbjct: 155 LQEELGLTYLFISHDLSVVRYISDRIAVM----YLGKIV 189
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 88.0 bits (218), Expect = 9e-21
Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 25/183 (13%)
Query: 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL----SFRQISDIGYMPQ--EL 93
L+ + ++ GLLGP+G GKTTLL I+G GT+K+ + IGY+PQ E
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 94 ALHGELSIRETF-----RYYGYM-------FDMTDDQIETRSKEILKLLELPPAKKIVGA 141
A +S+ T + G++ F D + + L EL A + VG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRR-----VGLTEL--ADRPVGE 113
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201
LSGGQ++R+ A +L P +L+LDEP GLD +++ + E+A G I++TTH +
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173
Query: 202 EEA 204
+A
Sbjct: 174 AQA 176
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 91.9 bits (229), Expect = 9e-21
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 31/190 (16%)
Query: 32 HVVLKGLNLNV-PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQIS--- 84
L ++L + P K+ ++G G GK+TLL ++G G++ L RQI
Sbjct: 478 TPALDNVSLTIRPGEKV-AIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPAD 536
Query: 85 ---DIGYMPQELAL-HGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLELPPAKK- 137
+IGY+PQ+ L +G ++R+ DD+ R+ E+ + E
Sbjct: 537 LRRNIGYVPQDPRLFYG--TLRDNI-----ALGAPYADDEEILRAAELAGVTEFVRRHPD 589
Query: 138 ----IVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+G +LSGGQ++ ++ A +LL +P +L+LDEPT +D + DRLK L
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR-WL 648
Query: 190 NGKTIIITTH 199
GKT+++ TH
Sbjct: 649 AGKTLVLVTH 658
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 91.7 bits (228), Expect = 1e-20
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 19/190 (10%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT---LDAGTIKLSFRQIS 84
K V+L ++ V + L+G SG GKTTLLN + R T + G ++ R +
Sbjct: 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831
Query: 85 D-----IGYMPQELALH-GELSIRETFRYYGYM---FDMTDDQIETRSKEILKLLELPP- 134
IGY+ Q+ LH ++RE+ R+ Y+ ++ + +E++KLLE+
Sbjct: 832 SSFQRSIGYVQQQ-DLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY 890
Query: 135 AKKIVG----ALSGGQQRRISFAVSLLHNPKLLI-LDEPTVGLDPILSQIIWDRLKEMAL 189
A +VG L+ Q++R++ V L+ PKLL+ LDEPT GLD + I ++++A
Sbjct: 891 ADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD 950
Query: 190 NGKTIIITTH 199
+G+ I+ T H
Sbjct: 951 HGQAILCTIH 960
Score = 33.9 bits (78), Expect = 0.11
Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 38/156 (24%)
Query: 50 LLGPSGCGKTTLLNCIVGR--------------NTLDAGTIKLSFRQISDIGYMPQELAL 95
+LG G G +TLL I + + IK +R D+ Y E +
Sbjct: 92 VLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYR--GDVVYN-AETDV 148
Query: 96 H-GELSIRETF-----------RYYGYMFDMTDDQIETRSKEILKLLELPPAKK------ 137
H L++ ET R G ++ + + + L +
Sbjct: 149 HFPHLTVGETLDFAARCKTPQNRPDGVS---REEYAKHIADVYMATYGLSHTRNTKVGND 205
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
V +SGG+++R+S A + L K+ D T GLD
Sbjct: 206 FVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 84.7 bits (210), Expect = 1e-20
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 17/123 (13%)
Query: 59 TTLLNCIVGRNTLDAGTIKLSFRQISD----------IGYMPQELALHGELSIRETFRYY 108
+TLL I G +GTI L + IG + Q+ L EL++RE +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF- 59
Query: 109 GYMFDMTDDQIETRSKEILKLLELPPA--KKIVGALSGGQQRRISFAVSLLHNPKLLILD 166
G D + E E L+ + LP ++ VG LSGGQ++R++ A +LL PKLL+LD
Sbjct: 60 GLRDKEADARAE----EALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLD 115
Query: 167 EPT 169
EPT
Sbjct: 116 EPT 118
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 87.4 bits (217), Expect = 1e-20
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 15/181 (8%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------- 84
VL +NL + +I L GPSG GKTTLL I G ++ G++K+ +++
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 85 ---DIGYMPQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPP-AKKIV 139
+IGY+ Q L G L+ R+ + + ++ + R++ +L+ + L
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITT 198
LSGGQ++R++ A +L+H PKL++ DEPT LD + + + ++++A G TI+I T
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199
Query: 199 H 199
H
Sbjct: 200 H 200
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 87.4 bits (217), Expect = 2e-20
Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 33/201 (16%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNC-------------IVGR-----NTL 71
G H L + L+ P+ + LLGPSG GK++LL I G T
Sbjct: 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRETF-----RYYGYMFDMTDDQIETRSKEI 126
I R+ ++G + Q+ L L++++ R G ++ DQ R++++
Sbjct: 73 SDKAI-RELRR--NVGMVFQQYNLWPHLTVQQNLIEAPCRVLG----LSKDQALARAEKL 125
Query: 127 LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP-ILSQIIWDRL 184
L+ L L P A + LSGGQQ+R++ A +L+ P++L+ DEPT LDP I +QI+ +
Sbjct: 126 LERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV-SII 184
Query: 185 KEMALNGKTIIITTHYIEEAK 205
+E+A G T +I TH +E A+
Sbjct: 185 RELAETGITQVIVTHEVEVAR 205
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 86.8 bits (216), Expect = 3e-20
Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 31/203 (15%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
+ Y G +L+G++L VP+ ++ +LG +G GKTTLL ++G + +G+I+L
Sbjct: 6 LNVYY---GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE 62
Query: 82 QISD----------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK-LL 130
I+ I Y+PQ + L++ E + RS++I +
Sbjct: 63 DITKLPPHERARAGIAYVPQGREIFPRLTVEENLL-------TGLAALPRRSRKIPDEIY 115
Query: 131 ELPPAKKIV-----GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP-ILSQI--IWD 182
EL P K + G LSGGQQ++++ A +L+ PKLL+LDEPT G+ P I+ I +
Sbjct: 116 ELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIR 175
Query: 183 RLKEMALNGKTIIITTHYIEEAK 205
RL+ G I++ Y++ A+
Sbjct: 176 RLRAEG--GMAILLVEQYLDFAR 196
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 89.0 bits (221), Expect = 3e-20
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 20/216 (9%)
Query: 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS- 84
KK G V + +L+V E +I+ ++G SG GK+TL+ + G I + + I+
Sbjct: 35 LKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK 94
Query: 85 ------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
I + Q AL ++ E + + + + E R+ E L+L+ L
Sbjct: 95 LSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGL 154
Query: 133 PP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN- 190
A K LSGG Q+R+ A +L ++P +L++DE LDP++ + D L E+
Sbjct: 155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 191 GKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHH 225
KTI+ TH ++EA + I +M+D G +V
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKD----GEIVQV 246
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 84.8 bits (211), Expect = 3e-20
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 41/202 (20%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ + K+ G L G++L+V +++ LLG +G GK+TL+ + G D+G I +
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60
Query: 80 FRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
+++S P++ G I V
Sbjct: 61 GKEVS--FASPRDARRAG---------------------IAM-----------------V 80
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LS G+++ + A +L N +LLILDEPT L P + ++ ++ + G +I +H
Sbjct: 81 YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
Query: 200 YIEEAKG-AHNIGLMRDDQYIG 220
++E A + ++RD + +G
Sbjct: 141 RLDEVFEIADRVTVLRDGRVVG 162
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 89.4 bits (222), Expect = 4e-20
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 30/216 (13%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IE ++ V+ +Y G VLK ++ ++ + ++GPSG GK+TL+ ++ +
Sbjct: 329 IEFEN---VSFSYP--GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS 383
Query: 74 GTIKLSFRQISD---------IGYMPQELAL-HGELSIRETFRYYGYMFDMTDDQIETRS 123
G I + I D IG + Q+ L G +IRE D TD++IE +
Sbjct: 384 GEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG--TIRENIALG--RPDATDEEIE-EA 438
Query: 124 KEILKLLELPPAKK-----IVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
++ E IVG LSGGQ++R++ A +LL NP +LILDE T LD
Sbjct: 439 LKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498
Query: 175 ILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210
+I D LK++ L G+T +I H + K A I
Sbjct: 499 ETEALIQDALKKL-LKGRTTLIIAHRLSTIKNADRI 533
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 88.1 bits (218), Expect = 6e-20
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 17/221 (7%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA--GTIKLSFRQIS--- 84
G + VL L+L + ++ L+G SGCGKTTLL I G G I ++ R ++
Sbjct: 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75
Query: 85 ----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIV 139
+ + Q AL L + + + M I R + LKL+ L A +
Sbjct: 76 PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP 135
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM--ALNGKTIIIT 197
LSGG Q+RI+ A ++ P +L+LDEP LD + + + + + L TI+
Sbjct: 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCV 195
Query: 198 THYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
TH ++A A G+M+D GRL H ++L +A D
Sbjct: 196 THDQDDALTLADKAGIMKD----GRLAAHGEPQALYDAPAD 232
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 88.4 bits (219), Expect = 6e-20
Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 19/204 (9%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
G H V ++L + + +I+ LLG SGCGK+TLL + G AG I L +S
Sbjct: 31 GQHAV-DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY 89
Query: 86 ---IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGA 141
I M Q AL +++ + + + +I +R E+L L+ + AK+
Sbjct: 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQ 149
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-----GKTIII 196
LSGGQ++R++ A SL PKLL+LDEP LD L DR++ ++ G T ++
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLR----DRMQLEVVDILERVGVTCVM 205
Query: 197 TTHYIEEAKG-AHNIGLMRDDQYI 219
TH EEA A I +M +++
Sbjct: 206 VTHDQEEAMTMAGRIAIMNRGKFV 229
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 86.4 bits (214), Expect = 6e-20
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 28/228 (12%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQIS 84
G+ + +K + L++P+N+I +GPSGCGK+T+L C N L G + + +
Sbjct: 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80
Query: 85 DIGYMPQELALHGEL----------SIRETFRY----YGYMFDMTDDQIETRSKEILKLL 130
P E+ + SI + Y GY DM D+ +E ++
Sbjct: 81 APDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDM-DELVERSLRQAALWD 139
Query: 131 ELPPAKKIVG-ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
E+ K G +LSGGQQ+R+ A ++ P+++++DEP LDPI + I + + E+
Sbjct: 140 EVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK- 198
Query: 190 NGKTIIITTHYIEEAK------GAHNIGLMRDDQYIGRLVHHDIVESL 231
TIII TH +++A N+ L G LV D E +
Sbjct: 199 EQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKI 246
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 88.8 bits (221), Expect = 6e-20
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 21/224 (9%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
+ ++ + K+ V ++L+V + +I+ LLG +G GK+TL+ + G D+G I
Sbjct: 2 EPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 77 -----KLSFRQISD-----IGYMPQELALHGELSIRETF-----RYYGYMFDMTDDQIET 121
++ + D IG + Q L L++ E G + D Q
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDR--RQARA 119
Query: 122 RSKEILKL--LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
R KE+ + L + P V LS G+Q+R+ +L +LLILDEPT L P +
Sbjct: 120 RIKELSERYGLPVDP-DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178
Query: 180 IWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222
+++ L+ +A GKTII TH ++E A + ++R + +G +
Sbjct: 179 LFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222
Score = 64.1 bits (157), Expect = 2e-11
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 34/213 (15%)
Query: 10 DPEIIEVKH-SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68
++EV+ SV K +K ++ V +I G+ G +G G++ L+ I G
Sbjct: 254 GEVVLEVEDLSV------KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGL 307
Query: 69 NTLDAGTIKLSFRQI-----------SDIGYMPQELALHG---ELSIRETF---RYY--- 108
+G I L+ + + + Y+P++ HG +LS+ E R+
Sbjct: 308 RKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKP 367
Query: 109 ---GYMFDMTDDQIETRSKEILKLLEL-PPAKKI-VGALSGGQQRRISFAVSLLHNPKLL 163
G D I ++E+++ ++ P+ +LSGG Q+++ A L P LL
Sbjct: 368 FSRGGFLDR--RAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLL 425
Query: 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
I +PT GLD + I +RL E+ GK +++
Sbjct: 426 IAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL 458
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 86.2 bits (214), Expect = 6e-20
Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 33/229 (14%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI------------------VGRNTL 71
G LK +NL++P+N++ L+GPSGCGK+TLL + G++
Sbjct: 12 GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY 71
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTD-DQIETRSKEILKLL 130
D + R+ +G + Q+ +SI + Y + + D +++ +E LK
Sbjct: 72 DKKIDVVELRR--RVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKA 128
Query: 131 ELPP-----AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
L LSGGQQ+R+ A +L P++L+LDEPT LDPI + I + ++
Sbjct: 129 ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQ 188
Query: 186 EMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
E+ TI+I TH +++A + D G LV + E +
Sbjct: 189 ELKKK-YTIVIVTHNMQQAARISDRTAFFYD----GELVEYGPTEQIFT 232
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 89.2 bits (221), Expect = 7e-20
Identities = 64/200 (32%), Positives = 100/200 (50%), Gaps = 20/200 (10%)
Query: 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR---NTLDAG 74
H ++ ++I +L G+ +I +LGPSG GK+TLLN + GR N G
Sbjct: 67 HKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNF-TG 125
Query: 75 TIKLSFRQISD-----IGYMPQELALHGELSIRETFRYYGYMF--DMTDDQIETRSKEIL 127
TI + R+ + G++ Q+ L+ L++RET + + Q + E +
Sbjct: 126 TILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESV 185
Query: 128 KLLELPPAK---KIVG-----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
+ EL K I+G +SGG+++R+S A +L NP LLILDEPT GLD +
Sbjct: 186 -ISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYR 244
Query: 180 IWDRLKEMALNGKTIIITTH 199
+ L +A GKTI+ + H
Sbjct: 245 LVLTLGSLAQKGKTIVTSMH 264
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 84.8 bits (210), Expect = 2e-19
Identities = 57/178 (32%), Positives = 97/178 (54%), Gaps = 8/178 (4%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG----YMP 90
LKG+NL + + + L+G SGCGK+TLLN I G +G + L +QI++ G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 91 QELALHGELSIRETFRYY--GYMFDMTDDQIETRSKEILKLLEL-PPAKKIVGALSGGQQ 147
Q +L L++RE + D++ + +E + L+ L A K G LSGG +
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120
Query: 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEA 204
+R++ A +L PK+L+LDEP LD + + + L ++ + T+++ TH ++EA
Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEA 178
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 84.6 bits (210), Expect = 2e-19
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 21/209 (10%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
VLK +N ++ + ++GP+G GKTTL+N ++ G I + I D
Sbjct: 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK 73
Query: 86 -----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE-LPPAKKIV 139
IG + Q+ L +I E R + + + LP V
Sbjct: 74 SLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTV 132
Query: 140 -----GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
G LS G+++ ++ A ++L +PK+LILDE T +D ++I + L+++ + G+T
Sbjct: 133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGRTS 191
Query: 195 IITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
II H + K A I ++ D G+++
Sbjct: 192 IIIAHRLSTIKNADKILVLDD----GKII 216
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 86.4 bits (215), Expect = 5e-19
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 30/222 (13%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG----RNTLDAGTIKLS-------F 80
+ LN +P + L+GPSG GKT+LLN ++G + +L I+L
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWR 422
Query: 81 RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE-----TRSKEILKLLEL--- 132
+ +S +G PQ HG ++R+ D +D+Q++ E L LL
Sbjct: 423 KHLSWVGQNPQ--LPHG--TLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLD 476
Query: 133 PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
P LS GQ +R++ A +LL +LL+LDEPT LD Q++ L A +
Sbjct: 477 TPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA-ASRRQ 535
Query: 193 TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
T ++ TH +E+ I +M+D G++V L +A
Sbjct: 536 TTLMVTHQLEDLAQWDQIWVMQD----GQIVQQGDYAELSQA 573
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 85.3 bits (211), Expect = 5e-19
Identities = 64/212 (30%), Positives = 108/212 (50%), Gaps = 25/212 (11%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI--------KLSFRQIS-- 84
L ++L+VP +IYG++G SG GK+TL+ C+ +G++ LS +++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 85 --DIGYMPQELALHGELSIRETFRYYGYMFDMTD---DQIETRSKEILKLLELPPAKKIV 139
IG + Q L LS R F ++ + D+I+ + E+L L+ L
Sbjct: 81 RRQIGMIFQHFNL---LSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY 137
Query: 140 GA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIIT 197
+ LSGGQ++R++ A +L NPK+L+ DE T LDP +Q I + LKE+ G TI++
Sbjct: 138 PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLI 197
Query: 198 THYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228
TH ++ K + ++ + G L+ V
Sbjct: 198 THEMDVVKRICDCVAVISN----GELIEQGTV 225
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 83.4 bits (207), Expect = 5e-19
Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 23/214 (10%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-------- 85
VL+ ++L++P + L+GPSG GK+TL+N I +D+G I + + D
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE----LPPA-KKIV 139
IG + Q++ L + ++ E Y T +++E + E LP ++
Sbjct: 77 QIGLVSQDVFLFND-TVAENIAYG--RPGATREEVE-EAARAANAHEFIMELPEGYDTVI 132
Query: 140 G----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
G LSGGQ++RI+ A +LL +P +LILDE T LD +++ L+ + N +T
Sbjct: 133 GERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKN-RTTF 191
Query: 196 ITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
+ H + + A I ++ D + + R H +++
Sbjct: 192 VIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 84.0 bits (208), Expect = 7e-19
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 40/211 (18%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
I+E + Y LKG+N + ++ LLGP+G GK+TL G
Sbjct: 1 ILETRDLK-----YSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT 55
Query: 73 AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI------------- 119
+G + + I Y + L L +R+T G +F DDQ+
Sbjct: 56 SGEVLIKGEPIK---YDKKSL-----LEVRKTV---GIVFQNPDDQLFAPTVEEDVAFGP 104
Query: 120 ----------ETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
E R KE LK + + K LSGGQ++R++ A L P++++LDEP
Sbjct: 105 LNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEP 164
Query: 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
T GLDP+ + I L ++ G TIII+TH
Sbjct: 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTH 195
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 82.0 bits (203), Expect = 8e-19
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 11/178 (6%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYM 89
G ++ +GL+ + + + GP+G GKTTLL + G D+G ++ + +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE 70
Query: 90 PQEL--------ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA 141
P L ELS E ++ + IE + + L
Sbjct: 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIED-ALAAVGLTGF--EDLPAAQ 127
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LS GQQRR++ A L L ILDEPT LD ++ L+ G +++TTH
Sbjct: 128 LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 82.9 bits (205), Expect = 1e-18
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 45/215 (20%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IEVK+ V KK VL G++L V ++ ++GPSG GKTTLL CI +A
Sbjct: 4 IEVKNLV------KKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA 57
Query: 74 GTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD-------------------- 113
GTI++ I + Q+ L IR+ ++ G++F
Sbjct: 58 GTIRVGDITIDTARSLSQQKGL-----IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI 112
Query: 114 ---MTDDQIETRSKEILKLLELP------PAKKIVGALSGGQQRRISFAVSLLHNPKLLI 164
++ R++E+L + L P + LSGGQQ+R++ A +L P++++
Sbjct: 113 VKGEPKEEATARARELLAKVGLAGKETSYPRR-----LSGGQQQRVAIARALAMRPEVIL 167
Query: 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
DEPT LDP L + + ++++A +T++I TH
Sbjct: 168 FDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 84.9 bits (211), Expect = 2e-18
Identities = 64/191 (33%), Positives = 94/191 (49%), Gaps = 30/191 (15%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTIKLSFRQISD--- 85
VLKGL+L + + LLG +GCGK+TLL + R G I L+ + I+D
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWDPQQGEILLNGQPIADYSE 409
Query: 86 ------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEIL------KLLELP 133
I + Q + L ++R+ + +D+ + E+L KLLE
Sbjct: 410 AALRQAISVVSQRVHLFSA-TLRDNLLLAA--PNASDEAL----IEVLQQVGLEKLLEDD 462
Query: 134 -PAKKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+G LSGG+QRR+ A +LLH+ LL+LDEPT GLD + I + L E A
Sbjct: 463 KGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA 522
Query: 189 LNGKTIIITTH 199
N KT+++ TH
Sbjct: 523 QN-KTVLMITH 532
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 82.7 bits (204), Expect = 2e-18
Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 25/211 (11%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ V +K+ G H VLKG++L + ++G SG GK+T L CI G+I ++
Sbjct: 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65
Query: 80 FRQISDIGYMPQELALHGELSIR----------ETFRYYGYMFDMTD-----------DQ 118
+ I+ + +L + + +R + F + +M + + +
Sbjct: 66 GQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 125
Query: 119 IETRSKEILKLLELPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
E R + + L ++ ++ G LSGGQQ+R+S A +L P++L+ DEPT LDP
Sbjct: 126 QEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP 185
Query: 175 ILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
L + ++++A GKT+++ TH + A+
Sbjct: 186 ELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 216
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 82.9 bits (205), Expect = 2e-18
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 46/213 (21%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
IIEV+ K G LKGL+L++PE LLGP+G GK+TLL + G
Sbjct: 4 IIEVED----LHFRYKDGTKA-LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ 58
Query: 73 AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI------------- 119
G +K+ R+++ + + G +F DDQ+
Sbjct: 59 RGRVKVMGREVN-------------AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGP 105
Query: 120 ---ETRSKEILKLLELPPAKKIVGA----------LSGGQQRRISFAVSLLHNPKLLILD 166
E+ + +E A K V LS GQ++R++ A L +P +++LD
Sbjct: 106 VNMGLDKDEVERRVE--EALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD 163
Query: 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
EP LDP + + + L + GKT+I+ TH
Sbjct: 164 EPMAYLDPRGQETLMEILDRLHNQGKTVIVATH 196
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 84.7 bits (210), Expect = 2e-18
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 23/188 (12%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
G VL G++L++P + +LGPSG GK+TLL + G G + L +S
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD 405
Query: 86 -----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET--RSKEILKLLELPP--AK 136
+ Q+ L ++RE R D TD+++ + L P
Sbjct: 406 EVRRRVSVCAQDAHLFDT-TVRENLRLARP--DATDEELWAALERVGLADWLRALPDGLD 462
Query: 137 KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP-ILSQIIWDRLKEMALNG 191
++G LSGG+++R++ A +LL + +L+LDEPT LD +++ D L AL+G
Sbjct: 463 TVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA--ALSG 520
Query: 192 KTIIITTH 199
+T+++ TH
Sbjct: 521 RTVVLITH 528
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 84.7 bits (210), Expect = 2e-18
Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 24/190 (12%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQIS- 84
G L+G++ ++ + ++GPSG GK+TL IVG +G+++L +Q
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 85 -----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-----EILKLLELPP 134
IGY+PQ++ L ++ E +G D ++I +K E++ L LP
Sbjct: 388 ETFGKHIGYLPQDVELF-PGTVAENIARFGENAD--PEKIIEAAKLAGVHELI--LRLPD 442
Query: 135 AKKIV-----GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
V LSGGQ++RI+ A +L +PKL++LDEP LD Q + + +K +
Sbjct: 443 GYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA 502
Query: 190 NGKTIIITTH 199
G T+++ TH
Sbjct: 503 RGITVVVITH 512
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 81.8 bits (202), Expect = 2e-18
Identities = 61/231 (26%), Positives = 117/231 (50%), Gaps = 22/231 (9%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
V++ Y KI L ++L++ + +I L+G +G GKTTLL + G +G I +
Sbjct: 11 VSAHYGKIQ---ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGK 67
Query: 82 QISD----------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
I+D + +P+ + +++ E G+ + Q + R K + +L
Sbjct: 68 DITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERD--QFQERIKWVYELFP 125
Query: 132 LPPAKKI--VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
++I G +SGG+Q+ ++ +L+ P+LL+LDEP++GL PI+ Q I+D ++++
Sbjct: 126 RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE 185
Query: 190 NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLV--EALEDA 238
G TI + +A + G + ++ G +V D ++L+ EA+ A
Sbjct: 186 QGMTIFLVEQNANQALKLADRGYVLEN---GHVVLEDTGDALLANEAVRSA 233
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 82.0 bits (202), Expect = 2e-18
Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 32/223 (14%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG-----RNTLDAGTIKLSFRQI- 83
GN+ L G++L+ E ++ L+GPSGCGK+T L C+ N G IK + I
Sbjct: 15 GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY 74
Query: 84 ----------SDIGYMPQELALHGELSIRETFRYYGYMFDMTD-DQIETRSKEILKLLEL 132
++G + Q+ S+ + Y + + D + I+ R +E LK +
Sbjct: 75 GSKMDLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAI 133
Query: 133 -----PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
+ A SGGQQ+RI A +L PK+++LDEPT LDPI S I + L E+
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193
Query: 188 ALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230
+ T I+ TH +++A R L++ D++E+
Sbjct: 194 K-HQYTFIMVTHNLQQAG--------RISDQTAFLMNGDLIEA 227
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 80.8 bits (200), Expect = 2e-18
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 35/157 (22%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLD--AGTIKLSFRQISD-----IGYMPQELALHGELSIR 102
L+G SG GKTTLL+ + GR T G I ++ R + GY+ Q+ L++R
Sbjct: 38 LMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVR 97
Query: 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKL 162
E R+ + R LS Q++R++ V L P +
Sbjct: 98 EALRFSALL----------R------------------GLSVEQRKRLTIGVELAAKPSI 129
Query: 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
L LDEPT GLD + I LK++A +G+ I+ T H
Sbjct: 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 82.2 bits (203), Expect = 2e-18
Identities = 69/224 (30%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG---TIKLSFR--QIS 84
G L + +++P+N++ L+GPSGCGK+TLL C N L G T + + I
Sbjct: 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIM 76
Query: 85 DIGYMPQELALHGEL----------SIRETFRY----YGYMFDMTDDQIETRS------- 123
D G L + SI E Y +G T D I +S
Sbjct: 77 DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALW 136
Query: 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
E+ L +LSGGQQ+R+ A +L NP+++++DEP LDPI + I D
Sbjct: 137 DEVKDRLHDSAL-----SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIED- 190
Query: 184 LKEMALNGKTIIITTHYIEEAKGAHNI-GLMRDDQYIGRLVHHD 226
L E T+II TH +++A + G M Y+G+L+ D
Sbjct: 191 LIEDLKKEYTVIIVTHNMQQAARVSDYTGFM----YLGKLIEFD 230
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 81.9 bits (203), Expect = 2e-18
Identities = 70/235 (29%), Positives = 118/235 (50%), Gaps = 30/235 (12%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV------- 66
IE ++ VT AY VLK ++ +P K ++GPSG GK+T+L +
Sbjct: 1 IEFEN---VTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS 55
Query: 67 GRNTLDAGTIKL----SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122
G +D I+ S R IG +PQ+ L + +I RY G D TD+++
Sbjct: 56 GSILIDGQDIREVTLDSLR--RAIGVVPQDTVLFND-TIGYNIRY-GRP-DATDEEVIEA 110
Query: 123 SK--EIL-KLLELPPA-KKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
+K +I K++ P IVG LSGG+++R++ A ++L NP +L+LDE T LD
Sbjct: 111 AKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDT 170
Query: 175 ILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
+ I L++++ G+T I+ H + A I +++D + + R H +++
Sbjct: 171 HTEREIQAALRDVS-KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 82.0 bits (202), Expect = 2e-18
Identities = 64/195 (32%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA---GTIKLSFRQISD- 85
G L +N+ + +NKI L+G SGCGK+T L C N A G +++ + + +
Sbjct: 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 86 --------IGYMPQELALHGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLEL--- 132
+G + Q+ + + SI E Y + M D+ E + L+ + L
Sbjct: 73 DVVALRKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEE 131
Query: 133 --PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190
K+ ALSGGQQ+R+ A +L PKLL+LDEPT LDPI S +I + LKE++ N
Sbjct: 132 VKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN 191
Query: 191 GKTIIITTHYIEEAK 205
++I+ TH +++ K
Sbjct: 192 -LSMIMVTHNMQQGK 205
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 80.7 bits (200), Expect = 3e-18
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS------FRQI 83
G V+ GL+ + + L GP+G GKTTLL I G AGTIKL
Sbjct: 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKI-VGAL 142
Y+ A+ L++ E ++ + I L+ + L P + G L
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIA----AALEAVGLAPLAHLPFGYL 128
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDP----ILSQIIWDRLKEMALNGKTIIITT 198
S GQ+RR++ A L+ N + ILDEPT LD + +++I L + G +I T
Sbjct: 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ----GGIVIAAT 184
Query: 199 HYIEEAKGAHNIGL 212
H GA + L
Sbjct: 185 HIPLGLPGARELDL 198
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 83.3 bits (206), Expect = 3e-18
Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 33/247 (13%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT--IKLSFRQIS 84
+ G + + +L++ E +I L+G SG GK+TLL + G N + G+ +K +
Sbjct: 32 DRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSV- 90
Query: 85 DIGYMP----------------QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
D+ Q+ AL ++ E + M M + R E L+
Sbjct: 91 DVANCDAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLE 150
Query: 129 LLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L+ L A + G LSGG Q+R+ A + +L++DEP LDP++ + D L E+
Sbjct: 151 LVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLEL 210
Query: 188 --ALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLV-----EALEDAL 239
L KTI+ +H ++EA K + I +M GR++ H E +V + + D +
Sbjct: 211 QSKLK-KTIVFVSHDLDEALKIGNRIAIMEG----GRIIQHGTPEEIVLNPANDYVADFV 265
Query: 240 RHGNVIN 246
H N +N
Sbjct: 266 AHTNPLN 272
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 80.9 bits (200), Expect = 5e-18
Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 32/201 (15%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQIS 84
G+ LK +NL++ EN++ L+GPSGCGK+T L + N L G + L + I
Sbjct: 14 GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73
Query: 85 DIGYMPQELALH----------GELSIRETFRYYGYMFDMTD----DQIETRS------- 123
+L +SI + Y + D D+I +S
Sbjct: 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALW 133
Query: 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
E+ L KK LSGGQQ+R+ A +L P++L++DEPT LDPI + I +
Sbjct: 134 DEVKDRL-----KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 184 LKEMALNGKTIIITTHYIEEA 204
++E+ TI+I TH +++A
Sbjct: 189 IQELK-KDYTIVIVTHNMQQA 208
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 80.8 bits (199), Expect = 7e-18
Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 30/221 (13%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQISD 85
+ +LK +NL++P+N + L+GPSGCGK+T + + N L G I L I D
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 86 IGYMPQELALHGELSIRETFRYYGYMFDMT-----------DDQIETRSKEILKLLEL-- 132
EL + ++ + +FD +D IE R +E LK L
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 133 ---PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
K LSGGQQ+R+ A ++ +P+++++DEP LDPI + I D + ++
Sbjct: 135 EVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK- 193
Query: 190 NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230
TI+I TH +++A R +Y ++ +I+ES
Sbjct: 194 EDYTIVIVTHNMQQA--------TRVSKYTSFFLNGEIIES 226
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 80.8 bits (200), Expect = 8e-18
Identities = 67/237 (28%), Positives = 111/237 (46%), Gaps = 20/237 (8%)
Query: 3 KISIKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL 62
KI K + + KK G V + ++L+V E +I+ ++G SG GK+TLL
Sbjct: 8 KIFGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLL 67
Query: 63 NCIVGRNTLDAGTIKLSFRQIS-------------DIGYMPQELALHGELSIRETFRYYG 109
CI +G + + + I+ I + Q AL ++ E +
Sbjct: 68 RCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGL 127
Query: 110 YMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
+ + + E R+ E L+L+ L K LSGG Q+R+ A +L +P +L++DE
Sbjct: 128 EVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187
Query: 169 TVGLDPILSQIIWDRLKEM-ALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLV 223
LDP++ + + D L + A KTI+ TH ++EA + I +M+D GRLV
Sbjct: 188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKD----GRLV 240
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 82.9 bits (205), Expect = 9e-18
Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 49/211 (23%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-------- 85
+L ++L + N ++G SG GK+TL +VG +G I L+ + D
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMT--DDQI-----ETRSKEILKLLELPPAKK 137
I Y+PQE Y+F + ++ + EI E+ K
Sbjct: 549 FINYLPQE----------------PYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKD 592
Query: 138 IV---------------GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
+ ++SGGQ++RI+ A +LL + K+LILDE T LD I + I +
Sbjct: 593 DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVN 652
Query: 183 RLKEMALNGKTIIITTHYIEEAKGAHNIGLM 213
L + L KTII H + AK + I ++
Sbjct: 653 NL--LNLQDKTIIFVAHRLSVAKQSDKIIVL 681
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 79.8 bits (197), Expect = 1e-17
Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 25/223 (11%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQIS 84
G+ L ++L +N++ L+GPSGCGK+T L C+ N L G I L I
Sbjct: 17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76
Query: 85 DIGYMPQELALHGEL----------SIRETFRYYGYMFDMTDDQ-IETRSKEILKLLEL- 132
D EL + SI E Y + + D + R + L+ L
Sbjct: 77 DPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALW 136
Query: 133 PPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
K + LSGGQQ+R+ A +L P++L++DEP LDPI +Q I + + E+
Sbjct: 137 DEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK 196
Query: 189 LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESL 231
TIII TH +++A ++ Y+G+L+ E +
Sbjct: 197 AR-YTIIIVTHNMQQAARVSDVTAFF---YMGKLIEVGPTEQI 235
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 80.9 bits (200), Expect = 1e-17
Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 36/202 (17%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
L +++ + + + ++G +G GKTT + + D GTI+ F+ + ++
Sbjct: 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81
Query: 94 ALHGELSIRET------------------FRYYGYM----------------FDMTDDQI 119
+ +L I++T F++ Y ++ ++
Sbjct: 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEA 141
Query: 120 ETRSKEILKLLELPPA--KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
+ R+ + ++L+ L + ++ LSGGQ+RR++ A L P L+ DEPT GLDP
Sbjct: 142 KKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGV 201
Query: 178 QIIWDRLKEMALNGKTIIITTH 199
+ I + + GKTII+ TH
Sbjct: 202 KEILEIFDNLNKQGKTIILVTH 223
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 79.7 bits (196), Expect = 1e-17
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 27/219 (12%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT-----IKLSFRQIS 84
G+ LKG+++ + E + +GPSGCGK+T L N L T I++ R I
Sbjct: 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73
Query: 85 DIGYMPQELALHGEL----------SIRETFRYYGYMFDMTDDQ-IETRSKEILKLLEL- 132
D G EL + + SI E Y + + D+ I R +E LK L
Sbjct: 74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALW 133
Query: 133 ----PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
K+ ALSGGQQ+R+ A ++ +P +L++DEP LDPI + + + + E+
Sbjct: 134 DEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK 193
Query: 189 LNGKTIIITTHYIEE-AKGAHNIGLMRDDQYIGRLVHHD 226
TI+I TH +++ A+ + Y+G +V +D
Sbjct: 194 -KDYTIVIVTHNMQQAARVSDKTAFF----YMGEMVEYD 227
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 78.7 bits (194), Expect = 2e-17
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83
+ GL+ + + + GP+G GKTTLL + G + AG + L+ +
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
Query: 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI-LKLLELPPAKKIVG 140
+ Y+ + LS+ E R++ D +D+Q+E + L E P V
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWHA--DHSDEQVEEALARVGLNGFEDRP----VA 124
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LS GQQRR++ A LL L ILDEPT LD + + G +++TTH
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 80.5 bits (199), Expect = 2e-17
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 24/197 (12%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD------------ 85
N +P I L GPSG GKT+L+N I G D G I+L+ R + D
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMTD--DQIETRSKEILKLLELPPAKKIVGAL 142
IGY+ Q+ L ++R R YG M DQ+ I LL+ P L
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLR-YGMWKSMRAQFDQL-VALLGIEHLLDRYPGT-----L 129
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT-IIITTHYI 201
SGG+++R++ +LL P+LL++DEP LD + I L+ + I+ +H +
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL 189
Query: 202 EE-AKGAHNIGLMRDDQ 217
+E + A + ++ + +
Sbjct: 190 DEVLRLADRVVVLENGK 206
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 78.4 bits (194), Expect = 2e-17
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 39/194 (20%)
Query: 32 HVVLKGLNLNV-PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQIS--- 84
L ++L + K+ ++G G GK+TLL + G +G++ L RQ+
Sbjct: 17 IPALDNVSLTIRAGEKV-AIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPAD 75
Query: 85 ---DIGYMPQELAL-HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVG 140
+IGY+PQ++ L +G ++R+ G DD+ IL+ EL V
Sbjct: 76 LRRNIGYVPQDVTLFYG--TLRDNITL-GAPL--ADDE------RILRAAELAGVTDFVN 124
Query: 141 ---------------ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
LSGGQ++ ++ A +LL++P +L+LDEPT +D + + +RL+
Sbjct: 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184
Query: 186 EMALNGKTIIITTH 199
++ L KT+II TH
Sbjct: 185 QL-LGDKTLIIITH 197
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 80.8 bits (200), Expect = 4e-17
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYM 89
+L LN V + + G SG GKT+LL + G G+ ++S S + ++
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRISMPADSALLFL 461
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGA------L 142
PQ L + ++RE Y D +D ++ +L + L A+++ L
Sbjct: 462 PQRPYL-PQGTLREALCYPNAAPDFSDAELV----AVLHKVGLGDLAERLDEEDRWDRVL 516
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
SGG+Q+R++FA LLH PK + LDE T LD ++ LKE L T+I H
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE-LPDATVISVGH 572
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 79.1 bits (195), Expect = 4e-17
Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 26/197 (13%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTI--KLSFR--QIS 84
G+ L +++++PEN++ ++GPSGCGK+T L CI N L DA + +L+FR +
Sbjct: 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109
Query: 85 DIGYMPQELALHGEL------------SIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
D P +AL + SI + YG D I+ R +E L+ L
Sbjct: 110 DADVDP--VALRRRIGMVFQKPNPFPKSIYDNV-AYGLKIQGYDGDIDERVEESLRRAAL 166
Query: 133 -----PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
LSGGQQ+R+ A ++ +P+++++DEP LDP+ + I D ++E+
Sbjct: 167 WDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL 226
Query: 188 ALNGKTIIITTHYIEEA 204
A T++I TH +++A
Sbjct: 227 A-EEYTVVIVTHNMQQA 242
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 78.2 bits (193), Expect = 5e-17
Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 20/151 (13%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-DIGY 88
G VL ++L + KI LLGP+G GK+TL+ ++G D G IK R IGY
Sbjct: 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK---RNGKLRIGY 71
Query: 89 MPQELALHGE--LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA----L 142
+PQ+L L L++ R T+ ++IL L+ A ++ A L
Sbjct: 72 VPQKLYLDTTLPLTVNRFLRLRP----------GTKKEDILPALKRVQAGHLIDAPMQKL 121
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
SGG+ +R+ A +LL+ P+LL+LDEPT G+D
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 76.7 bits (190), Expect = 5e-17
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 49/210 (23%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----SFR 81
+ + ++ ++ V +I G+ G G G+T L + G +G I L + R
Sbjct: 8 RGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRR 67
Query: 82 QISD-----IGYMPQELALHG---ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP 133
D I Y+P++ G +LS+ E L L
Sbjct: 68 SPRDAIRAGIAYVPEDRKREGLVLDLSVAENI--------------------ALSSL--- 104
Query: 134 PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193
LSGG Q+++ A L +P++LILDEPT G+D I+ ++E+A GK
Sbjct: 105 --------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156
Query: 194 IIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222
+++ + ++E G I +M + GR+
Sbjct: 157 VLLISSELDELLGLCDRILVMYE----GRI 182
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 77.7 bits (191), Expect = 7e-17
Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 22/196 (11%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFRQISDIGY 88
G LKG++L+ +N+I L+GPSGCGK+T L + N L TI + Y
Sbjct: 16 GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75
Query: 89 MPQELALHGELSIRETFR-------------YYGYMFD------MTDDQIETRSKEILKL 129
P E + + F+ YG + D+ +ET K+
Sbjct: 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 130 LELPPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
E+ + +LSGGQQ+R+ A L P +++LDEPT LDPI S I + L E+
Sbjct: 136 DEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR 195
Query: 189 LNGKTIIITTHYIEEA 204
+ TII+ TH + +A
Sbjct: 196 -DQYTIILVTHSMHQA 210
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 77.6 bits (192), Expect = 1e-16
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 24/192 (12%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQISDIG 87
G +LKG+NL V E +++ ++GP+G GK+TL I+G + G I DI
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF---DGEDIL 71
Query: 88 YM-PQELALHG------------ELSIRETFRYYG---YMFDMTDDQIETRSKEILKLLE 131
+ P E A G ++ + R + KE +LL
Sbjct: 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLG 131
Query: 132 LPP--AKKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
L ++ V SGG+++R LL PKL ILDEP GLD +I+ + + +
Sbjct: 132 LDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 189 LNGKTIIITTHY 200
G+ ++I THY
Sbjct: 192 EEGRGVLIITHY 203
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 77.5 bits (191), Expect = 1e-16
Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 40/255 (15%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
E+ +V H+ + VL ++L++ E + GLLG SGCGK+TL ++G
Sbjct: 4 EVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP 63
Query: 72 DAGTIKL--------------SFR-------QISDIGYMPQELALHGELSIRETFRYYGY 110
GT+ +FR Q S P+ I E R+
Sbjct: 64 AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTV---RQIIGEPLRHL-- 118
Query: 111 MFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
+ + + + R E+L ++ L A K+ LSGGQ +RI+ A +L PKL++LDE
Sbjct: 119 -TSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
Query: 169 TVGLDPILSQIIWDRLKEM-ALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHD 226
LD +L +I + L+++ G + TH + + +M Q
Sbjct: 178 VSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQ--------- 228
Query: 227 IVESLVEALEDALRH 241
IVE A + +H
Sbjct: 229 IVEECDVAQLLSFKH 243
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 79.2 bits (196), Expect = 2e-16
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 41/176 (23%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
++++ V + K N + K LNL + + ++G +G GKTTLL +VG D+GT+
Sbjct: 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
Query: 77 KLSFRQISDIGYMPQ--------ELAL-----------HGELSIRETFRYYGYMFDMTDD 117
K S + ++IGY Q +L L E ++R T G + DD
Sbjct: 377 KWS--ENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL---GRLLFSQDD 431
Query: 118 QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
KK V LSGG++ R+ F ++ P +L++DEPT +D
Sbjct: 432 -----------------IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
Score = 37.9 bits (89), Expect = 0.005
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 51/192 (26%)
Query: 48 YGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------KLS-----FRQIS--DIGYMPQ 91
YGL+G +GCGK+T + + G AG + KL F + + D M
Sbjct: 30 YGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMG- 88
Query: 92 ELALHGEL--SIRETFRYYGYMFDMTDDQ------------------IETRSKEILKLLE 131
H EL +E R Y + +M+++ E R+ E+L +
Sbjct: 89 ----HTELWEVKQERDRIYA-LPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVG 143
Query: 132 LPPAKK--IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+P + ++ ++ G + R+ A +L NP +L+LDEPT LD ++ I W L+++ L
Sbjct: 144 IPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD--INTIRW--LEDV-L 198
Query: 190 NGK--TIIITTH 199
N + T+II +H
Sbjct: 199 NERNSTMIIISH 210
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 77.0 bits (190), Expect = 2e-16
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT 75
+ H A K + VL ++L++ + LLG SGCGK+TL +VG + G
Sbjct: 9 LSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN 68
Query: 76 I--------KLSFRQIS----DIGYMPQEL--ALHGELSIRETFRY-YGYMFDMTDDQIE 120
+ KL+ Q DI + Q+ A++ ++RE R ++ + +
Sbjct: 69 VSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERL 128
Query: 121 TRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
R+ E+L+ ++L K LSGGQ +R+ A +L PKLLILDE LD +L
Sbjct: 129 ARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQA 188
Query: 179 IIWDRLKEM 187
+ LK++
Sbjct: 189 GVIRLLKKL 197
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 76.5 bits (188), Expect = 2e-16
Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 52/232 (22%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNC------------IVGRNTLDAGTI- 76
G VL G+NL +P+N I L+GPSG GK+TLL + G LD I
Sbjct: 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73
Query: 77 KLSF----RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD--QIETRSKEILKLL 130
K+ R++ + +P + LSI E + + +++ R + L+
Sbjct: 74 KMDVIELRRRVQMVFQIPNPIP---NLSIFENVALGLKLNRLVKSKKELQERVRWALEKA 130
Query: 131 EL---------PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI----LS 177
+L PA G LSGGQQ+R+ A +L P++L+ DEPT LDP +
Sbjct: 131 QLWDEVKDRLDAPA----GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIE 186
Query: 178 QIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
+ + K+M TI++ TH+ ++A R Y+ L IVE
Sbjct: 187 SLFLELKKDM-----TIVLVTHFPQQAA--------RISDYVAFLYKGQIVE 225
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 76.4 bits (188), Expect = 3e-16
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 31/208 (14%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
V + K+ G VL GLN +V + L+GPSG GK+T+L ++ +D G I++
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 80 FRQISDIGYMPQELALHGELSIRETFRYYGYMFD-----------------------MTD 116
Q+ + L E +R+ G +F M
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 117 DQIETRSKEILKLLELPPAKKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
+ E R+ E+L ++ L + A LSGGQQ+R++ A +L PK+++ DE T LDP
Sbjct: 121 AEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 176 LSQ----IIWDRLKEMALNGKTIIITTH 199
L +I E L T+++ TH
Sbjct: 181 LVGEVLNVIRRLASEHDL---TMLLVTH 205
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 76.1 bits (187), Expect = 3e-16
Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 48/245 (19%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
IIE+++ SAY G +K + + + +N+I ++GPSGCGKTTLL I N
Sbjct: 2 PIIEIEN----FSAY--YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDH 55
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTD-------DQIE---- 120
G FR I + Q++ +L + E + G +F D +
Sbjct: 56 IPG-----FRVEGKIYFKGQDI-YDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPR 109
Query: 121 ---TRSKEIL-KLLE--LPPA----------KKIVGALSGGQQRRISFAVSLLHNPKLLI 164
+SK L +++E L A K LSGGQQ+R+ A +L P++++
Sbjct: 110 IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVIL 169
Query: 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224
LDEPT LDPI +Q I L+E++ N TI+I TH I +A +R YI +
Sbjct: 170 LDEPTSALDPIATQRIEKLLEELSEN-YTIVIVTHNIGQA--------IRIADYIAFMYR 220
Query: 225 HDIVE 229
+++E
Sbjct: 221 GELIE 225
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 76.2 bits (187), Expect = 3e-16
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 39/218 (17%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD------- 72
+ V K H L ++LN+ ++ LLGPSG GK+TLL + G T D
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64
Query: 73 ---AGTIKLSFRQISDI-------GYMPQELALHGELSI---------------RETFRY 107
T++ R DI GY+ Q+ L LS+ R F +
Sbjct: 65 ELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSW 124
Query: 108 YGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167
+ T +Q + + + ++ + A + V LSGGQQ+R++ A +L+ K+++ DE
Sbjct: 125 F------TREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADE 178
Query: 168 PTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEA 204
P LDP ++I+ D L+++ N G T+++T H ++ A
Sbjct: 179 PIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYA 216
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 76.0 bits (187), Expect = 3e-16
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 34/198 (17%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL---NCIVGRNTLDA---GTIKLSFRQI 83
G++ V+KG++L +P+N ++ L+GPSGCGK+TLL N ++ N +A G ++L R I
Sbjct: 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE-EARVEGEVRLFGRNI 73
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMT-----------------DDQIETRSKEI 126
Y P + + F+Y +T +++ R +
Sbjct: 74 ----YSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWA 129
Query: 127 LKLLELPPAKK-----IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
LK L K LSGGQ++R+ A +L PK+L++DEPT +DP+ + I
Sbjct: 130 LKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE 189
Query: 182 DRLKEMALNGKTIIITTH 199
+ L E+ TI++ TH
Sbjct: 190 ELLFELK-KEYTIVLVTH 206
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 75.8 bits (187), Expect = 4e-16
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 27/196 (13%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ- 91
L GL+L + E ++G +G GK+TLLN I G +G I + + D+
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILID--GV-DVTKKSVA 76
Query: 92 -------------ELALHGELSIRETF---RYYGYMFDMTDDQIETRSKEILKLLE---- 131
EL+I E G ++ E R + L
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGL 136
Query: 132 --LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+G LSGGQ++ +S ++ LH PK+L+LDE T LDP ++ + + ++
Sbjct: 137 GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196
Query: 190 NGK-TIIITTHYIEEA 204
K T ++ TH +E+A
Sbjct: 197 EHKLTTLMVTHNMEDA 212
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 75.1 bits (185), Expect = 4e-16
Identities = 55/199 (27%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI--------KLSFRQISD 85
VLKG++L++ + +I ++G SG GK+TLL+ + G + +G + KLS + +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 86 I-----GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIV 139
+ G++ Q L + + E + + + + R+ E+L+ + L
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP 139
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT-IIITT 198
LSGG+++R++ A +L++ P L++ DEPT LD ++II+D + E+ T ++ T
Sbjct: 140 SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVT 199
Query: 199 HYIEEAKGAHNIGLMRDDQ 217
H +E AK + M+D Q
Sbjct: 200 HDLELAKKLDRVLEMKDGQ 218
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 77.9 bits (192), Expect = 4e-16
Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 35/209 (16%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----------SFR 81
VL LNL++ + G++GPSG GK+TL + T G + + R
Sbjct: 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLR 530
Query: 82 QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI-ETRSKEILKL-------LELP 133
+ +G + QE L SIR+ + + KL ELP
Sbjct: 531 R--QMGVVLQENVLFSR-SIRDNIA-------LCNPGAPFEHVIHAAKLAGAHDFISELP 580
Query: 134 -----PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ LSGGQ++RI+ A +L+ NP++LI DE T LD +I ++E+
Sbjct: 581 QGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC 640
Query: 189 LNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217
G+T+II H + + I ++ Q
Sbjct: 641 -RGRTVIIIAHRLSTVRACDRIIVLEKGQ 668
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 76.2 bits (187), Expect = 4e-16
Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 30/199 (15%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG--------------- 74
G + L ++L +P KI +GPSGCGK+TLL C N L G
Sbjct: 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90
Query: 75 -----TIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
++KL RQ+ + P +I R GY ++ D+ +E +
Sbjct: 91 DSQINSVKLR-RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNL-DELVEDSLRRAAIW 148
Query: 130 LELPPAKKIVG-ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
E+ K G ALSGGQQ+R+ A ++ P +L++DEP LDPI ++ +++E+
Sbjct: 149 EEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR----QVEELC 204
Query: 189 LNGK---TIIITTHYIEEA 204
L K TII+ TH +++A
Sbjct: 205 LELKEQYTIIMVTHNMQQA 223
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 75.5 bits (186), Expect = 5e-16
Identities = 56/211 (26%), Positives = 102/211 (48%), Gaps = 24/211 (11%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
++ V +K+ G H VLKG++L + ++G SG GK+T L CI AG+I++
Sbjct: 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV 65
Query: 79 SFRQI-----SDIGYMP----QELALHGELS-IRETFRYYGYM-------------FDMT 115
+ +I D P Q L L + + F + +M ++
Sbjct: 66 NGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVS 125
Query: 116 DDQIETRSKEILKLLELPPAKKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
+ R+++ L + + A LSGGQQ+R++ A +L P++++ DEPT LDP
Sbjct: 126 KAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP 185
Query: 175 ILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
L + ++++A G+T+++ TH + A+
Sbjct: 186 ELVGEVLKVMQDLAEEGRTMVVVTHEMGFAR 216
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 75.4 bits (185), Expect = 6e-16
Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 50/231 (21%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQIS 84
G L +NL + ENKI L+GPSGCGK+T L C+ N L G + L + I
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 85 D-----------IGYM---PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
D +G + P + SI + Y + + D KE+ K++
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFPM----SIYDNVAYGPRIHGIKD------KKELDKIV 124
Query: 131 E--LPPA----------KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
E L A KK LSGGQQ+R+ A ++ P ++++DEPT LDPI +
Sbjct: 125 EWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTL 184
Query: 179 IIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
I D + E+ TI+I TH +++A R Y + D++E
Sbjct: 185 KIEDLMVELK-KEYTIVIVTHNMQQAS--------RVSDYTAFFLMGDLIE 226
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 76.8 bits (189), Expect = 7e-16
Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 16/190 (8%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
G+ VL G++L+V E + GL+GP+G GKTTLL I G T AGT+ ++ +
Sbjct: 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSAR 73
Query: 86 -----IGYMPQELALHGELSIRETFRY----YGYMFDMTDDQIETRSKEILKLLELPP-A 135
+ +PQ+ +L E +R+ + FD + + ++ + A
Sbjct: 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA 133
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI-IWDRLKEMALNGKTI 194
+ V +LSGG+++R+ A +L +L+LDEPT LD I Q+ + ++ + +GKT
Sbjct: 134 DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD-INHQVRTLELVRRLVDDGKTA 192
Query: 195 IITTHYIEEA 204
+ H ++ A
Sbjct: 193 VAAIHDLDLA 202
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 75.7 bits (186), Expect = 7e-16
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 21/205 (10%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTL---LNCIV--- 66
I++V+ + Y G H LKG+N+N+ + ++ +LG +G GK+TL LN I+
Sbjct: 5 ILKVEE---LNYNYSD-GTHA-LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS 59
Query: 67 -GRNTLDAGTIKLS------FRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI 119
GR D I S R+ + + + L S+ + + + +D++
Sbjct: 60 SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA-SVYQDVSFGAVNLKLPEDEV 118
Query: 120 ETRSKEILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
R LK + K K LS GQ++R++ A L+ PK+L+LDEPT GLDP+
Sbjct: 119 RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 179 IIWDRLKEMALN-GKTIIITTHYIE 202
I L EM G TIII TH I+
Sbjct: 179 EIMKLLVEMQKELGLTIIIATHDID 203
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 74.9 bits (184), Expect = 9e-16
Identities = 68/240 (28%), Positives = 112/240 (46%), Gaps = 34/240 (14%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA-----GTIKLSFRQIS 84
G + LK +NL +P ++ L+GPSGCGK+TLL C+ N L G + + I
Sbjct: 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY 73
Query: 85 ---DIGYMPQELALHGE------LSIRETFRYYGYMFDMTD----DQIETRS-------K 124
D+ + ++ + + +SI E Y + D D++ RS
Sbjct: 74 GNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD 133
Query: 125 EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
E+ L+ LSGGQQ+R+ A ++ P ++++DEPT LDPI + I + +
Sbjct: 134 EVKDRLKSHAF-----GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELM 188
Query: 185 KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGNV 244
+E+ N TI+I TH +++A+ I +G LV HD + + +D G V
Sbjct: 189 EELKKN-YTIVIVTHSMQQAR---RISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQGYV 244
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 75.3 bits (185), Expect = 1e-15
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 40/211 (18%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-LDA----GTIKLSFRQI- 83
G+ LKG+++++PE + L+GPSGCGK+T L C+ N + A G+++L + I
Sbjct: 56 GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115
Query: 84 ----------------------------SDIGYMPQELALHGELSIRETFRYYGYMFDMT 115
+I Y P++ HG+++ R G
Sbjct: 116 QDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRK---HGDINTGLLARLLGRDDKDA 172
Query: 116 DDQIETRSKEILKLLELPPAKKIVGAL--SGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+D++ RS L + + AL SGGQQ+R+ A L +P+++++DEP LD
Sbjct: 173 EDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232
Query: 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEA 204
PI + I D ++E+A T+++ TH +++A
Sbjct: 233 PIATSKIEDLIEELA-EEYTVVVVTHNMQQA 262
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 74.5 bits (183), Expect = 1e-15
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD------- 85
+LK +++ IY ++GPSG GK+TL+ I G+I + I
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76
Query: 86 --IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALS 143
IG + Q+ L E ++++ Y G M + I+ L A + V LS
Sbjct: 77 RKIGMVFQQPHLF-EGTVKDNIEY-GPMLKGEKNVDVEYYLSIVGL-NKEYATRDVKNLS 133
Query: 144 GGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD---RLKEMALNGKTIIITTHY 200
GG+ +R+S A +L +NP++L+LDEPT LDP ++II + +LK T+I TH
Sbjct: 134 GGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKM--NLTVIWITHN 191
Query: 201 IEEAK 205
+E+AK
Sbjct: 192 MEQAK 196
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 74.8 bits (184), Expect = 1e-15
Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 30/195 (15%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTI--KLSFRQIS------- 84
+KG+++ +NKI L+GPSG GK+T L + N T+D + ++ +R I
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 85 ------DIGYM---PQELALHGELSIRETFRYYGYMFDMTDDQ-IETRSKEILKLLEL-- 132
IG + P A SI E + + D + ++ + LK L
Sbjct: 96 VYEMRKHIGMVFQRPNPFAK----SIYENITFALERAGVKDKKVLDEIVETSLKQAALWD 151
Query: 133 ---PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
K LSGGQQ+R+ A ++ P +L++DEP LDPI + + + + E+
Sbjct: 152 QVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK 211
Query: 190 NGKTIIITTHYIEEA 204
N TIII TH +++A
Sbjct: 212 N-YTIIIVTHNMQQA 225
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 76.0 bits (187), Expect = 1e-15
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 21/214 (9%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG---RNTLDAGTI----KLS 79
K G L G++L V + GL G +G GK+TL+ + G T D L
Sbjct: 9 KTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68
Query: 80 FRQISD-----IGYMPQELALHGELSIRETFRYYGYMFD-----MTDDQIETRSKEILKL 129
I D I + QEL L ELS+ E + G M + + R+K +L+
Sbjct: 69 ASNIRDTERAGIVIIHQELTLVPELSVAENI-FLGNEITLPGGRMAYNAMYLRAKNLLRE 127
Query: 130 LELP--PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L+L + VG GGQQ+ + A +L +LLILDEP+ L ++I+ D ++++
Sbjct: 128 LQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 188 ALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220
+G + +H + E K I ++RD Q++
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221
Score = 58.7 bits (142), Expect = 8e-10
Identities = 61/255 (23%), Positives = 115/255 (45%), Gaps = 31/255 (12%)
Query: 9 IDPEIIEVKHSVAVTSAYKKIGNHVV-LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67
I I+E ++ + + I H + ++ ++ +I G+ G G G+T L+ + G
Sbjct: 253 IGDVILEARN----LTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG 308
Query: 68 R-NTLDAGTIKLSFRQI----------SDIGYMPQELALHG-----------ELSIRETF 105
G + ++ + + + I +P++ HG LS+ ++F
Sbjct: 309 AYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSF 368
Query: 106 RYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165
+ + + QI + + LK+ P I G LSGG Q++ A LL NP++LIL
Sbjct: 369 CFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-GRLSGGNQQKAVLAKMLLTNPRVLIL 427
Query: 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVH 224
DEPT G+D I+ + ++A G II+ + + E G + + ++ + + G V+
Sbjct: 428 DEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVN 487
Query: 225 HDIVESLVEALEDAL 239
H + + V L AL
Sbjct: 488 HALTQEQV--LAAAL 500
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 74.3 bits (182), Expect = 1e-15
Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 56/232 (24%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT---------------- 75
H VLK +N++ PE +I ++GPSGCGK+TLL + N + +G
Sbjct: 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76
Query: 76 ----------IKLSFRQ--------ISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117
+ + F+Q ++ + P+ L + + E + D+
Sbjct: 77 NLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE 136
Query: 118 QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
+ K L ALSGGQQ+R+ A L P+++++DEP LDP+ +
Sbjct: 137 VKDNLHKSGL-------------ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183
Query: 178 QIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
I + ++E+ N TI I TH +++A R + G L+ D+VE
Sbjct: 184 MRIEELMQELKQN-YTIAIVTHNMQQAA--------RASDWTGFLLTGDLVE 226
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 76.3 bits (188), Expect = 2e-15
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 31/232 (13%)
Query: 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-------GRNTLDA 73
V AY + L GLNL V + L+GPSG GK+TL ++ GR LD
Sbjct: 342 QVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401
Query: 74 GTIKLSFRQI--SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE------ 125
++ + + +PQ+ L S+ E RY G D TD+++E ++
Sbjct: 402 VDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRY-GRP-DATDEEVEAAARAAHAHEF 458
Query: 126 ILKLLE---LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
I L E ++ V LSGGQ++RI+ A ++L + +L+LDE T LD Q++
Sbjct: 459 ISALPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQ 517
Query: 183 RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV----HHDIVES 230
L E + G+T +I H + A I +M DQ GR+V H +++
Sbjct: 518 AL-ETLMKGRTTLIIAHRLATVLKADRIVVM--DQ--GRIVAQGTHAELIAK 564
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 75.8 bits (187), Expect = 2e-15
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 20/200 (10%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQISD---- 85
+LKG++ + + G++GPSG GK+TL +VG +G+++L RQ
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409
Query: 86 --IGYMPQELALHGELSIRETFRYYGYMFDMTDDQI--ETRSKEILKL-LELPPA-KKIV 139
IGY+PQ++ L + +I E +G + +++ R + +L L LP +
Sbjct: 410 RHIGYLPQDVELF-DGTIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRI 466
Query: 140 G----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
G LSGGQ++RI+ A +L +P L++LDEP LD + + G T++
Sbjct: 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVV 526
Query: 196 ITTHYIEEAKGAHNIGLMRD 215
+ H I +++D
Sbjct: 527 VIAHRPSALASVDKILVLQD 546
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 74.8 bits (185), Expect = 2e-15
Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 56/223 (25%)
Query: 14 IEVKHSVAVTSAYKKIGNHVV-LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
IE+K+ ++ + + G + L ++L++P +I+G++G SG GK+TL+ CI
Sbjct: 2 IELKN---ISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT 58
Query: 73 AGTI--------KLS------FRQISDIGYMPQELALHGELSIRETFRYYGYMFD----- 113
+G + LS R+ IG + Q L LS R +FD
Sbjct: 59 SGRVLVDGQDLTALSEKELRKARR--QIGMIFQHFNL---LSSRT-------VFDNVALP 106
Query: 114 -----MTDDQIETRSKEILKLLELP------PAKKIVGALSGGQQRRISFAVSLLHNPKL 162
+I+ R E+L+L+ L PA+ LSGGQ++R++ A +L NPK+
Sbjct: 107 LELAGTPKAEIKARVTELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALASNPKV 161
Query: 163 LILDEPTVGLDPILSQIIWDRLKEMALN---GKTIIITTHYIE 202
L+ DE T LDP ++ I + LK+ +N G TI++ TH ++
Sbjct: 162 LLCDEATSALDPATTRSILELLKD--INRELGLTIVLITHEMD 202
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 74.7 bits (184), Expect = 3e-15
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 23/202 (11%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
SV + + K G+ V+ K +NL++ E + +GPSGCGK+TLL I G + +G + +
Sbjct: 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62
Query: 79 SFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK---EILK 128
++++D +G + Q AL+ LS+ E + + ++I R E+L+
Sbjct: 63 GEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQ 122
Query: 129 ---LLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS---QIIWD 182
LL+ P ALSGGQ++R++ +L+ P + +LDEP LD L +I
Sbjct: 123 LAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177
Query: 183 RLKEMALNGKTIIITTHYIEEA 204
RL + G+T+I TH EA
Sbjct: 178 RLHKRL--GRTMIYVTHDQVEA 197
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 72.8 bits (179), Expect = 3e-15
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 29/190 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI------------KLSFR 81
VLK ++L V + L GPSG GK+TLL + D+G I + S R
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 82 QI-----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE----- 131
++ IGY+ Q L + +S E + + R++E+L L
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL 142
Query: 132 --LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
LPPA SGG+Q+R++ A + + +L+LDEPT LD Q++ + + E
Sbjct: 143 WHLPPA-----TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA 197
Query: 190 NGKTIIITTH 199
G +I H
Sbjct: 198 RGAALIGIFH 207
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 73.1 bits (179), Expect = 4e-15
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 44/222 (19%)
Query: 16 VKHSVAVTSAYKKI--GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+ + + KI GN + ++ ++ + +N+I G +GPSGCGK+T+L + N L
Sbjct: 3 SEAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVK 62
Query: 74 GTIKLSFRQISDIGYMPQELALHG--ELSIRETFRYYGYMFDMTD--------------- 116
G FR + ++ Q++ G + +R RY G +F +
Sbjct: 63 G-----FRFEGHVHFLGQDVYGKGVDPVVVR---RYIGMVFQQPNPFSMSIFDNVAFGLR 114
Query: 117 ---------DQIETRSKEILKLLELPPAKKIVG-ALSGGQQRRISFAVSLLHNPKLLILD 166
D+++ + E+ K+ G +LSGGQQ+R+ A ++ P++L+LD
Sbjct: 115 LNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD 174
Query: 167 EPTVGLDPILSQIIWDRLKEMALNGK---TIIITTHYIEEAK 205
EP LDPI ++ R++E+ + K TI + TH +++A
Sbjct: 175 EPCSALDPIATR----RVEELMVELKKDYTIALVTHNMQQAI 212
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 73.0 bits (179), Expect = 4e-15
Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 64/217 (29%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTL---LNCIV---------------GRNTL 71
G H LK +NL++PEN++ ++GPSGCGK+T LN ++ G N L
Sbjct: 23 GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82
Query: 72 DAGTIKLSFRQISDIGYM-------PQEL--------ALHGE------LSIRETFRYYGY 110
+ R+ +IG + PQ + +HG I E
Sbjct: 83 KGKVDLVELRK--NIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA 140
Query: 111 MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
++D D++ T++ +LSGGQQ+R+ A +L NP +L++DEPT
Sbjct: 141 LWDEVKDRLHTQAL----------------SLSGGQQQRLCIARALATNPDVLLMDEPTS 184
Query: 171 GLDPILSQIIWDRLKEMALNGK---TIIITTHYIEEA 204
LDP+ ++ +++E+ L K TI+I TH +++A
Sbjct: 185 ALDPVSTR----KIEELILKLKEKYTIVIVTHNMQQA 217
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 73.4 bits (181), Expect = 1e-14
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 41/183 (22%)
Query: 8 RIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67
R+ ++IE ++ ++ + G+ +++ L+ +P I G++GP+G GK+TL I G
Sbjct: 317 RLGDKVIEAEN---LSKGF---GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370
Query: 68 RNTLDAGTIKLSFRQISDIGYMPQEL-ALHGELSIRETFRYYGYMFDMTD--DQIETRSK 124
+ D+GTIK+ + + Y+ Q AL ++ E ++ D I+ +
Sbjct: 371 QEQPDSGTIKIG--ETVKLAYVDQSRDALDPNKTVWEE---------ISGGLDIIQLGKR 419
Query: 125 EILKLLELPPAK--------------KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
E+ P++ K VG LSGG++ R+ A +L +L+LDEPT
Sbjct: 420 EV-------PSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472
Query: 171 GLD 173
LD
Sbjct: 473 DLD 475
Score = 65.3 bits (160), Expect = 6e-12
Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 40/181 (22%)
Query: 30 GNHVVLKGLNLN-VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY 88
+LK ++L+ P KI G+LG +G GK+TLL + G + G + + +GY
Sbjct: 16 PKKEILKDISLSFFPGAKI-GVLGLNGAGKSTLLRIMAGVDKEFNGEARPA--PGIKVGY 72
Query: 89 MPQELALHGELSIRETF------------RYYG-YM-FDMTDDQIETRSKEILKL----- 129
+PQE L ++RE R+ F D ++ E +L
Sbjct: 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIID 132
Query: 130 -----------------LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
L PP V LSGG++RR++ LL P +L+LDEPT L
Sbjct: 133 AADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHL 192
Query: 173 D 173
D
Sbjct: 193 D 193
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 72.1 bits (177), Expect = 1e-14
Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 38/202 (18%)
Query: 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD 85
Y G+ L +N P N ++GP+G GK+TL G +G++ + I+
Sbjct: 11 YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPIT- 69
Query: 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQI-----------------------ETR 122
+ +IRE ++ G +F DDQI R
Sbjct: 70 ------------KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHR 117
Query: 123 SKEILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
L +L L + ++ LSGG+++R++ A + P++L+LDEPT GLDP + +
Sbjct: 118 VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177
Query: 182 DRLKEMALN-GKTIIITTHYIE 202
D L ++ G T+I +TH ++
Sbjct: 178 DFLNDLPETYGMTVIFSTHQLD 199
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 72.0 bits (176), Expect = 1e-14
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 27/198 (13%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQIS 84
G LK +++ +P+N + L+GPSGCGK+T + C+ N L G + + I
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82
Query: 85 DIGYMPQELALH----------GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-- 132
+ EL + +SI + Y + ++ + L+ L
Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD 142
Query: 133 ---PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
K +LSGGQQ+R+ A +L PK+++ DEPT LDPI + R++++ +
Sbjct: 143 ETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA----RIEDLIM 198
Query: 190 NGK---TIIITTHYIEEA 204
N K TI+I TH +++A
Sbjct: 199 NLKKDYTIVIVTHNMQQA 216
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 73.5 bits (181), Expect = 1e-14
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 20/208 (9%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
S K+ VLKG++ + +++ LLG +G GK+TL+ I G D+GT+++
Sbjct: 14 ARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN 73
Query: 82 QISD----------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQI-ETRSKEILKLL 130
+ I +PQE L LS++E +F + Q + K++L L
Sbjct: 74 PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENI-----LFGLPKRQASMQKMKQLLAAL 128
Query: 131 --ELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+L G+L ++ + L+ + ++LILDEPT L P ++ ++ R++E+
Sbjct: 129 GCQLDLDSS-AGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL 187
Query: 189 LNGKTIIITTHYIEEAKG-AHNIGLMRD 215
G I+ +H + E + A I +MRD
Sbjct: 188 AQGVGIVFISHKLPEIRQLADRISVMRD 215
Score = 60.1 bits (146), Expect = 3e-10
Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 23/211 (10%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG---------- 87
++L V +I GL G G G+T L + G G I L+ ++I+ +
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 88 YMP---QELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKL------LELPPAKK 137
Y+P Q L+ + + + R +L+ ++ A++
Sbjct: 342 YLPEDRQSSGLYLDAPLA--WNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQ 399
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGG Q+++ A L +P+LLI+DEPT G+D I+ ++ +A ++
Sbjct: 400 AARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFI 459
Query: 198 THYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227
+ +EE + A + +M + G L I
Sbjct: 460 SSDLEEIEQMADRVLVMHQGEISGALTGAAI 490
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 71.0 bits (174), Expect = 1e-14
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMP------- 90
+L + +I ++GPSG GK+TLLN I G T +G + ++ D+ P
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLING---VDVTAAPPADRPVS 73
Query: 91 ---QELALHGELSIRETF---RYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALS 143
QE L L++ + G D Q + L + L K++ G LS
Sbjct: 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ---AIEVALARVGLAGLEKRLPGELS 130
Query: 144 GGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKTIIITTHYIE 202
GG+++R++ A L+ + +L+LDEP LDP L + D + ++ A T+++ TH E
Sbjct: 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190
Query: 203 EAK 205
+AK
Sbjct: 191 DAK 193
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 73.2 bits (180), Expect = 1e-14
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 31/226 (13%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-------GRNTLD 72
+ V+ AY +L G++ +P K ++G SG GK+T+L + G T+D
Sbjct: 266 INVSFAY--DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITID 323
Query: 73 AGTIKL----SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE--- 125
I+ S R IG +PQ+ L + +I +Y D T +++ ++
Sbjct: 324 GQDIRDVTQQSLR--RAIGIVPQDTVLFND-TIAYNIKYGRP--DATAEEVGAAAEAAQI 378
Query: 126 ---ILKLLELPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
I L E VG LSGG+++R++ A ++L NP +LILDE T LD Q
Sbjct: 379 HDFIQSLPEG--YDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQ 436
Query: 179 IIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224
I L+E++ T++I H + A I ++ + + + R H
Sbjct: 437 AIQAALREVSAGRTTLVI-AHRLSTIIDADEIIVLDNGRIVERGTH 481
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 73.7 bits (181), Expect = 1e-14
Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 21/169 (12%)
Query: 50 LLGPSGCGKTTLLNCIVGRNT--LDAGTIKLS--------FRQISDIGYMPQELALHGEL 99
L+G SG GKTTL++ + GR T G I++S F +IS GY Q ++
Sbjct: 911 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS--GYCEQNDIHSPQV 968
Query: 100 SIRETFRYYGYM---FDMTDDQIETRSKEILKLLELPPAKK-IVG-----ALSGGQQRRI 150
++RE+ Y ++ +++ ++ E+++L+EL K IVG LS Q++R+
Sbjct: 969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRL 1028
Query: 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+ AV L+ NP ++ +DEPT GLD + I+ ++ G+T++ T H
Sbjct: 1029 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
Score = 37.5 bits (87), Expect = 0.007
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 65/181 (35%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY--------MPQELA------- 94
LLGP GKTTLL + G+ LD S + +I Y +P++ +
Sbjct: 196 LLGPPSSGKTTLLLALAGK--LDP-----SLKVSGEITYNGYRLNEFVPRKTSAYISQND 248
Query: 95 LH-GELSIRETFRY------YGYMFDMTDDQIETRSKE---------------------- 125
+H G ++++ET + G +D+ ++ R K+
Sbjct: 249 VHVGVMTVKETLDFSARCQGVGTRYDLLS-ELARREKDAGIFPEAEVDLFMKATAMEGVK 307
Query: 126 -------ILKLLELPPAK-KIVG-----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
LK+L L K IVG +SGGQ++R++ ++ K L +DE + GL
Sbjct: 308 SSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367
Query: 173 D 173
D
Sbjct: 368 D 368
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 71.7 bits (176), Expect = 2e-14
Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 24/209 (11%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS------------ 79
H + +N + K Y ++G +G GK+TL+ I GT+ +
Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKY 79
Query: 80 FRQI-SDIGYMPQ--ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK 136
R + IG + Q E L E ++ + F M D+++ + +L ++L ++
Sbjct: 80 IRPVRKRIGMVFQFPESQLF-EDTVEREIIFGPKNFKMNLDEVKNYAHRLL--MDLGFSR 136
Query: 137 KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NG 191
++ +SGGQ R+I+ L NP +++LDEPT GLDP + + LK +
Sbjct: 137 DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN 196
Query: 192 KTIIITTHYIEE-AKGAHNIGLMRDDQYI 219
KTII+ +H + E A+ A + +M++ +
Sbjct: 197 KTIILVSHDMNEVARYADEVIVMKEGSIV 225
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 70.4 bits (173), Expect = 2e-14
Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 16/159 (10%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------DIGYMPQELALHGELSIRE 103
GP+G GKTTLL + G DAG + I + Y+ + + EL+ E
Sbjct: 35 GPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALE 94
Query: 104 TFRYYGYMFDMTDDQIETRSKEILKL---LELPPAKKIVGALSGGQQRRISFAVSLLHNP 160
++ + + + L +LP VG LS GQQRR++ A L
Sbjct: 95 NLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP-----VGQLSAGQQRRVALARLWLSPA 149
Query: 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
L ILDEP LD ++ + A G +++TTH
Sbjct: 150 PLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 70.2 bits (172), Expect = 3e-14
Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 39/226 (17%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-------GRNTLDA---GTIKLSF-- 80
V+L ++L + ++ G++G SG GK+TL I GR +D ++
Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR 75
Query: 81 RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL-------LELP 133
RQ+ G + QE L SIR+ M R E KL ELP
Sbjct: 76 RQV---GVVLQENVLFNR-SIRDNIALADPGMSME------RVIEAAKLAGAHDFISELP 125
Query: 134 PA-KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
IVG LSGGQ++RI+ A +L+HNP++LI DE T LD I + ++
Sbjct: 126 EGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI- 184
Query: 189 LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
G+T+II H + K A I +M GR+V + L+
Sbjct: 185 CAGRTVIIIAHRLSTVKNADRIIVM----EKGRIVEQGSHDELLAE 226
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 70.8 bits (173), Expect = 3e-14
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 46/237 (19%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI---------------- 65
++ Y I + +LK + + +P N I+G++GPSG GK+TLL +
Sbjct: 13 ISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK 72
Query: 66 ---VGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD-QIET 121
G++ IKL ++G + Q+ LSI + Y + + +I+
Sbjct: 73 VLYFGKDIFQIDAIKLR----KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKK 128
Query: 122 RSKEILKLLEL---------PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
+E L+ + L PA + LSGGQQ+R++ A +L PK+L++DEPT +
Sbjct: 129 IVEECLRKVGLWKEVYDRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEPTSMI 184
Query: 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
D + SQ I + E+ N I+I +H ++ R Y+ L + ++VE
Sbjct: 185 DIVNSQAIEKLITELK-NEIAIVIVSHNPQQVA--------RVADYVAFLYNGELVE 232
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 70.6 bits (173), Expect = 3e-14
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 42/201 (20%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQI----SD 85
L ++L+ N+I L+GPSG GK+TLL I N L+ G+I + I +D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 86 IGYMPQELALHGE------LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
+ +E+ + + +SI E Y + + D Q+ + E K +
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVE----------KSLK 130
Query: 140 GA----------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
GA LSGGQQ+R+ A L +PK+++LDEPT LDPI + I +
Sbjct: 131 GASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET 190
Query: 184 LKEMALNGKTIIITTHYIEEA 204
L + + T+++ T +++A
Sbjct: 191 LLGLK-DDYTMLLVTRSMQQA 210
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 70.5 bits (173), Expect = 3e-14
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 33/197 (16%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLD----AGTIKLSFRQISDIGYM 89
L ++L++PE + +GPSGCGK+T L C+ N T+D G I L I D
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 90 PQEL-ALHGEL---------SIRETFRY----YGYMFDMTD-DQIETRS-------KEIL 127
EL A G + SI E Y +G + D+I S +E+
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 128 KLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L P LSGGQQ+R+ A ++ +P+++++DEP LDPI + + + + E+
Sbjct: 155 DRLHEPGT-----GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209
Query: 188 ALNGKTIIITTHYIEEA 204
N TI+I TH +++A
Sbjct: 210 RQN-YTIVIVTHSMQQA 225
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 69.9 bits (171), Expect = 3e-14
Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 23/184 (12%)
Query: 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMP-------- 90
+LNV + +I ++GPSG GK+TLLN I G +G+IK++ S G P
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVN--DQSHTGLAPYQRPVSML 75
Query: 91 -QELALHGELSIRETFR---YYGYMFD-MTDDQIE--TRSKEILKLLELPPAKKIVGALS 143
QE L L++R+ + G + +++ + I L+ P LS
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130
Query: 144 GGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITTHYIE 202
GGQ++R++ A L+ +L+LDEP LDP+L + + +K++ + T+++ TH++
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 203 EAKG 206
+A+
Sbjct: 191 DARA 194
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 71.4 bits (175), Expect = 3e-14
Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 31/231 (13%)
Query: 2 RKISIKR--IDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKT 59
+K+ + D I+ VK+ V K+ V L ++ +NKIY ++G SG GK+
Sbjct: 8 KKLKVPNPLSDDIILRVKNLYCVFDE-KQENELVALNNISYTFEKNKIYFIIGNSGSGKS 66
Query: 60 TLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIR---ETFRYYGYMFDMTD 116
TL+ G GTI++ I D + + I+ E R +F +
Sbjct: 67 TLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPE 126
Query: 117 DQI--ETRSKEI------LKLLELPPAKKI------VG-----------ALSGGQQRRIS 151
Q+ +T K+I L + + K +G LSGGQ+RR++
Sbjct: 127 YQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVA 186
Query: 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE 202
A L P++LI DEPT GLDP + + + N KT+ + TH +E
Sbjct: 187 IAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 71.3 bits (174), Expect = 4e-14
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 24/194 (12%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------------KL 78
VL LNL++ NK+ +GPSGCGK+T L + N L GT K+
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 79 SFRQI-SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI-ETRSKEILKLLEL---- 132
S ++ + IG + Q+ E+SI + Y + D +I E ++ LK L
Sbjct: 157 SSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV 215
Query: 133 -PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
K ALSGGQQ+R+ A ++ P++L++DEPT LDPI + I + + E+
Sbjct: 216 KDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK-KK 274
Query: 192 KTIIITTHYIEEAK 205
+III TH + +A+
Sbjct: 275 YSIIIVTHSMAQAQ 288
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 69.7 bits (171), Expect = 4e-14
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 31/224 (13%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL----------SFRQISDIG 87
+L VP +I +LGPSG GK+TLLN I G T +G I + + R +S +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77
Query: 88 YMPQELALHGELSIRETF---RYYGYMFDMTD----DQIETRSKEILKLLELPPAKKIVG 140
QE L L++ + G + + + L LP G
Sbjct: 78 ---QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP------G 128
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTH 199
LSGGQ++R++ A L+ +L+LDEP LDP L + + ++ T+++ TH
Sbjct: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTH 188
Query: 200 YIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLV-EALEDALRHG 242
+ E+A + + D+ GR+ + L+ A G
Sbjct: 189 HPEDAARIADRVVFLDN---GRIAAQGSTQELLSGKASAAALLG 229
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 70.0 bits (172), Expect = 4e-14
Identities = 60/225 (26%), Positives = 112/225 (49%), Gaps = 24/225 (10%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-LDAGTIKLSFRQISD 85
K G VVL ++L++P+ I ++GP+G GK+TLL+ ++ R D+G I + +++
Sbjct: 9 KSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLKKDSGEITIDGLELTS 67
Query: 86 ---------IGYMPQELALHGELSIRE--TFRYYGY---MFDMTDDQIETRSKEILKLLE 131
+ + QE ++ L++R+ F + Y D +I + E L L +
Sbjct: 68 TPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED 127
Query: 132 LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN- 190
L + + + LSGGQ++R A+ L + ++LDEP LD S I L+ +A
Sbjct: 128 L--SDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 191 GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEA 234
GKTI++ H I A + +I +++ G++V + +++
Sbjct: 186 GKTIVVVLHDINFASCYSDHIVALKN----GKVVKQGSPDEIIQP 226
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 70.1 bits (172), Expect = 4e-14
Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 42/206 (20%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAG 74
+ + + K+ G VL L+L++P + ++G SGCGK+TLL + G T L AG
Sbjct: 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72
Query: 75 TIKLSFRQISDIGYMPQELAL--------HGELSIRETFRYYGYMFDMTDDQIETRSKEI 126
T L+ + D M Q+ L + L ++ +R + +
Sbjct: 73 TAPLAEAR-EDTRLMFQDARLLPWKKVIDNVGLGLKGQWR--------------DAALQA 117
Query: 127 LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI----LSQII- 180
L + L A + ALSGGQ++R++ A +L+H P LL+LDEP LD + + +I
Sbjct: 118 LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIE 177
Query: 181 --WDRLKEMALNGKTIIITTHYIEEA 204
W + +G T+++ TH + EA
Sbjct: 178 SLWQQ------HGFTVLLVTHDVSEA 197
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 71.8 bits (176), Expect = 5e-14
Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 15/180 (8%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT--IKLSFRQISDIGYM 89
H L ++ VPE +I G++G +G GK+TL N I G + GT IK S I+ I
Sbjct: 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIA-ISS- 94
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKI---VGALSGGQ 146
L+G+L+ E G M +T ++I+ EI++ ++ K I V S G
Sbjct: 95 ----GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADI--GKFIYQPVKTYSSGM 148
Query: 147 QRRISFAVSLLHNPKLLILDEP-TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
+ R+ FA+S+ NP +L++DE +VG D ++ D++ E GKTI +H + + K
Sbjct: 149 KSRLGFAISVHINPDILVIDEALSVG-DQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVK 207
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 70.4 bits (173), Expect = 5e-14
Identities = 57/191 (29%), Positives = 101/191 (52%), Gaps = 25/191 (13%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL- 93
L +N+++P ++G +G GK+TLL + G +GT+ + R I+ G ++L
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITA-GKKNKKLK 81
Query: 94 ALHGELSI----------RETFRY---YGYM-FDMTDDQIETRSKEILKLLELPPA--KK 137
L ++ I ET +G M F ++++ + +++E+++L+ LP +
Sbjct: 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR 141
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD---RL-KEMALNGKT 193
LSGGQ RR++ A L P++L+LDEPT GLDP + + + +L KE L T
Sbjct: 142 SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGL---T 198
Query: 194 IIITTHYIEEA 204
++ TH +E+A
Sbjct: 199 TVLVTHSMEDA 209
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 68.3 bits (168), Expect = 7e-14
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 24/176 (13%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQISD 85
+G +LKG+NL + + +++ L+GP+G GK+TL I+G + G I I+D
Sbjct: 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68
Query: 86 IGYMPQELALHG-ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSG 144
+ P+E A G L+ + G ++ + L+ + G SG
Sbjct: 69 LP--PEERARLGIFLAFQYPPEIPG-----------VKNADFLRYVN-------EG-FSG 107
Query: 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
G+++R LL P L ILDEP GLD +++ + + ++ GK+++I THY
Sbjct: 108 GEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY 163
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 69.4 bits (170), Expect = 8e-14
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 29/205 (14%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
VT +Y G +K + ++P K+ L+GPSGCGK+T+L + N L G L R
Sbjct: 19 VTISY---GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGC-SLKGR 74
Query: 82 QISD-----------------IGYMPQELALHGELSIRETF----RYYGYMFDMTDDQIE 120
+ D IG + Q+ + SI E R GY DM D+ +E
Sbjct: 75 VLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDM-DELVE 132
Query: 121 TRSKEILKLLELPPAKKIVG-ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
++ E G +LSGGQQ+R+ A ++ P+++++DEP LDPI +
Sbjct: 133 RSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLK 192
Query: 180 IWDRLKEMALNGKTIIITTHYIEEA 204
I + + E+ N TI+I TH +++A
Sbjct: 193 IEETMHELKKN-FTIVIVTHNMQQA 216
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 68.3 bits (168), Expect = 9e-14
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 34/190 (17%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
++ GL+ + ++ + GP+G GKT+LL + G DAG + I
Sbjct: 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE 71
Query: 86 -------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE------- 131
+G+ P + EL+ E R+Y + DD+ + + L
Sbjct: 72 YHQDLLYLGHQP---GIKTELTALENLRFYQRLHGPGDDE------ALWEALAQVGLAGF 122
Query: 132 --LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+P V LS GQQRR++ A L L ILDEP +D + L + A
Sbjct: 123 EDVP-----VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177
Query: 190 NGKTIIITTH 199
G +I+TTH
Sbjct: 178 QGGMVILTTH 187
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 67.2 bits (165), Expect = 1e-13
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 35/169 (20%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMP 90
V+LK L+ + + GPSG GK++L + G +G I + D+ ++P
Sbjct: 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLP 70
Query: 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRI 150
Q Y+ T +E L + P + LSGG+Q+R+
Sbjct: 71 QR----------------PYLPLGT-------LREQL----IYPWDDV---LSGGEQQRL 100
Query: 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+FA LLH PK + LDE T LD ++ LKE+ G T+I H
Sbjct: 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGH 146
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 69.0 bits (169), Expect = 1e-13
Identities = 60/194 (30%), Positives = 99/194 (51%), Gaps = 29/194 (14%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTIKLSFRQISD------ 85
+L L+L P K+ GL+G +G GK+TLL ++GR+ G I L + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAF 83
Query: 86 ---IGYMPQELALHGELSIRETF---RY--YGYM--FDMTDDQIETRSKEILKLLELPP- 134
+ Y+PQ+L +++RE RY +G + F D + + +E + L+ L P
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADRE---KVEEAISLVGLKPL 140
Query: 135 AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI----IWDRLKEMALN 190
A ++V +LSGG+++R A+ + + + L+LDEPT LD I Q+ + RL +
Sbjct: 141 AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD-IAHQVDVLALVHRLSQ--ER 197
Query: 191 GKTIIITTHYIEEA 204
G T+I H I A
Sbjct: 198 GLTVIAVLHDINMA 211
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 70.3 bits (173), Expect = 1e-13
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 27/216 (12%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG---RNTLDAGTI-----KL 78
K G L ++L V +I L G +G GK+TL+ + G T + G I +L
Sbjct: 13 KTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE-GEIIFEGEEL 71
Query: 79 SFRQISD-----IGYMPQELALHGELSIRETF------RYYGYMFDMTDDQIETRSKEIL 127
I D I + QELAL ELS+ E G M D + R++++L
Sbjct: 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIM---DYDAMYLRAQKLL 128
Query: 128 KLLEL--PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
L+L PA VG L GQQ+ + A +L +LLILDEPT L + ++ D ++
Sbjct: 129 AQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIR 187
Query: 186 EMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220
++ +G I +H + E K + I ++RD ++IG
Sbjct: 188 DLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223
Score = 49.5 bits (119), Expect = 7e-07
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 48/195 (24%)
Query: 12 EIIEVKHSVA--VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG-- 67
I+EV++ A + + K + V + ++ +I G+ G G G+T L+ C+ G
Sbjct: 258 VILEVRNLTAWDPVNPHIKRVDDV-----SFSLRRGEILGIAGLVGAGRTELVQCLFGAY 312
Query: 68 --RNTLDAGTIKLSFRQIS----------DIGYMPQELALHG---ELSIRETF------R 106
R G I + + + I +P++ G + + + R
Sbjct: 313 PGRWE---GEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDR 369
Query: 107 YYGYMFDMTDDQIETRS--KEILKL------LELPPAKKIVGALSGGQQRRISFAVSLLH 158
+ G DD E ++ + I +L EL + LSGG Q++ A LL
Sbjct: 370 FTG--GSRIDDAAELKTILESIQRLKVKTASPELA-----IARLSGGNQQKAVLAKCLLL 422
Query: 159 NPKLLILDEPTVGLD 173
NPK+LILDEPT G+D
Sbjct: 423 NPKILILDEPTRGID 437
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 68.2 bits (167), Expect = 1e-13
Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 27/207 (13%)
Query: 13 IIEVKH-SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
IIEV H S V ++ +LKG+ L V + ++GPSG GK+TLL + G +
Sbjct: 6 IIEVHHLSKTVGQGEGELS---ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP 62
Query: 72 DAGTIKLSFRQISD-------------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQ 118
+G ++L + + +G++ Q L L+ E + +
Sbjct: 63 SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSAD 122
Query: 119 IETRSKEILKLLELPPAKKIV---GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
+K +L+ + L K++ LSGG+Q+R++ A + P +L DEPT LD
Sbjct: 123 SRAGAKALLEAVGL--GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180
Query: 176 LSQIIWDRLKEMALN---GKTIIITTH 199
I D L ALN G T+++ TH
Sbjct: 181 TGDKIADLL--FALNRERGTTLVLVTH 205
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 68.7 bits (168), Expect = 1e-13
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTL---LNCIVGR--NTLDAGTIKLSFRQIS 84
G LK +NL++ EN++ ++GPSGCGK+T LN +V + G I + I
Sbjct: 35 GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94
Query: 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA--- 141
D Y +EL + + ++ + ++D + + K L+ K + GA
Sbjct: 95 DKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW 154
Query: 142 -------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
LSGGQQ+R+ A L P ++++DEPT LDPI + + + ++E+
Sbjct: 155 DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK 214
Query: 189 LNGKTIIITTHYIEEA 204
+ +III TH +++A
Sbjct: 215 KD-YSIIIVTHNMQQA 229
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 68.5 bits (167), Expect = 2e-13
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 22/188 (11%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---KLSF---------- 80
+L+G+++ + ++K+ ++GPSGCGK+T L C+ N L++ ++ F
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 81 ------RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP 134
RQ+S + P + ++ + G+ + D I + + L +
Sbjct: 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK 141
Query: 135 AK--KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
K K LSGGQQ+R+ A +L PK+L++DEP GLDPI S + ++ + L +
Sbjct: 142 HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE 201
Query: 193 -TIIITTH 199
T++I +H
Sbjct: 202 LTMVIVSH 209
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 68.6 bits (168), Expect = 2e-13
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI--------KLSFR 81
GN + ++L VP KI ++GPSG GKTTLL I G+ D G I +S
Sbjct: 18 GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRS 77
Query: 82 QISD----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL--LELPPA 135
++ + + Q AL ++++ + Y + S ++KL + L A
Sbjct: 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL-LHSTVMMKLEAVGLRGA 136
Query: 136 KKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM--ALNGK 192
K++ + LSGG RR + A ++ P L++ DEP VG DPI ++ + E+ AL G
Sbjct: 137 AKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL-GV 195
Query: 193 TIIITTHYIEE 203
T ++ +H + E
Sbjct: 196 TCVVVSHDVPE 206
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 69.3 bits (170), Expect = 2e-13
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 22/172 (12%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
S+ + + K G VL ++L++P ++ LLGPSG GKTTLL I G +G I+
Sbjct: 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61
Query: 79 SFRQIS-------DIGYMPQELALHGELSIRETFRYYGYMFDMT---------DDQIETR 122
+S +G++ Q AL +++ + F +T I+ +
Sbjct: 62 HGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI-----AFGLTVLPRRERPNAAAIKAK 116
Query: 123 SKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
++L++++L A + LSGGQ++R++ A +L P++L+LDEP LD
Sbjct: 117 VTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 69.8 bits (172), Expect = 2e-13
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 41/179 (22%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
++IE ++ ++ ++ G+ +++ L+ ++P I G++GP+G GK+TL I G+
Sbjct: 323 KVIEAEN---LSKSF---GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP 376
Query: 72 DAGTIKLSFRQISDIGYMPQEL-ALHGELSIRETFRYYGYMFDMTD--DQIETRSKEILK 128
D+GTIK+ + + Y+ Q AL ++ E +++ D I+ ++EI
Sbjct: 377 DSGTIKIG--ETVKLAYVDQSRDALDPNKTVWE---------EISGGLDIIKVGNREI-- 423
Query: 129 LLELPPAK--------------KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
P++ K VG LSGG++ R+ A +L +L+LDEPT LD
Sbjct: 424 -----PSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
Score = 65.1 bits (160), Expect = 7e-12
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 44/183 (24%)
Query: 30 GNHVVLKGLNLN-VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS--FRQISDI 86
+LK ++L+ P KI G+LG +G GK+TLL + G + G + + + +
Sbjct: 18 PKKQILKDISLSFFPGAKI-GVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIK----V 72
Query: 87 GYMPQELALHGELSIRETF------------RY------YGYMFDMTDDQIETRSK--EI 126
GY+PQE L E ++RE R+ Y D + + EI
Sbjct: 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEI 132
Query: 127 L----------KL------LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
+ +L L PP V LSGG++RR++ LL P +L+LDEPT
Sbjct: 133 IDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTN 192
Query: 171 GLD 173
LD
Sbjct: 193 HLD 195
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 68.1 bits (166), Expect = 2e-13
Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 30/199 (15%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI------------VGRNTLDAGTI-- 76
NH V K ++++ PEN + ++GPSGCGK+T+L I G+ LD I
Sbjct: 17 NHAV-KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75
Query: 77 ----KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD------MTDDQIETRSKEI 126
+S R+ +G + Q+ +SI + GY + D+ +E+ K +
Sbjct: 76 RGVDPVSIRR--RVGMVFQKPNPFPAMSIYDNV-IAGYKLNGRVNRSEADEIVESSLKRV 132
Query: 127 LKLLELPPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
E+ K LSGGQQ+R+ A ++ P+++++DEP LDPI + I + ++
Sbjct: 133 ALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 186 EMALNGKTIIITTHYIEEA 204
E+ TIII TH +++A
Sbjct: 193 ELK-EKYTIIIVTHNMQQA 210
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 68.5 bits (168), Expect = 2e-13
Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 33/206 (16%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92
L +N+ + + + GL+G +G GK+TL+ + G +G I I + ++
Sbjct: 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-----IIDGVDITDKK 75
Query: 93 LALHGELSIRE----TFRYYGY-MFDMT---------------DDQIETRSKEILKLLEL 132
+ L IR+ F+Y Y +F+ T +++IE R K + ++ L
Sbjct: 76 VKLS---DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL 132
Query: 133 PPAK---KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
K LSGGQ+RR++ A + PK+LILDEPT GLDP I +++KE+
Sbjct: 133 DYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK 192
Query: 190 NGK-TIIITTHYIEE-AKGAHNIGLM 213
TII+ +H +E+ AK A I +M
Sbjct: 193 EYNMTIILVSHSMEDVAKLADRIIVM 218
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 68.1 bits (167), Expect = 2e-13
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96
+NL V E +I L+GP+G GKTT+ NC+ G GTI L + I G ++A
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE--GLPGHQIARM 80
Query: 97 GELSIRETFRYYGYMFDMT---------DDQIET-------------RSK---------- 124
G + TF++ +MT Q++T R++
Sbjct: 81 G---VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATW 137
Query: 125 -EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI----LSQI 179
E + LLE A + G L+ GQQRR+ A ++ P++L+LDEP GL+P L ++
Sbjct: 138 LERVGLLEH--ANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDEL 195
Query: 180 IWDRLKE 186
I L+
Sbjct: 196 I-AELRN 201
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 67.2 bits (164), Expect = 3e-13
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 27/196 (13%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQIS 84
++ +L +N + + +I L+GPSGCGK+TLL+ ++G G + L+ +++
Sbjct: 11 RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD 70
Query: 85 -------DIGYMPQELALHGELSIRETFRYYGYMFDMTDD-QIETRSKEILKLLE----L 132
IG + Q+ L LS+ + +F + + R LE
Sbjct: 71 MLPAAQRQIGILFQDALLFPHLSVGQNL-----LFALPATLKGNARRNAANAALERSGLD 125
Query: 133 PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL----SQIIWDRLKEMA 188
+ LSGGQ+ R++ +LL PK L+LDEP LD L Q ++ ++
Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAG 185
Query: 189 LNGKTIIITTHYIEEA 204
+ + TH +++
Sbjct: 186 I---PTVQVTHDLQDV 198
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 67.5 bits (165), Expect = 3e-13
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
VT AY + +VL+ ++ + ++ L+GPSG GK+T++ + G + L +
Sbjct: 17 VTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK 76
Query: 82 QISD---------IGYMPQELALHGELSIRETFRY--YGYMFDM-TDDQIETRSKEILKL 129
IS + + QE L S+++ Y F+ + + + +
Sbjct: 77 PISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISE 135
Query: 130 LELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
L + LSGGQ++R++ A +L+ NP++LILDE T LD Q + L +
Sbjct: 136 LASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195
Query: 187 MALNGKTIIITTHYIEEAKGAHNI 210
+T+++ H + + A I
Sbjct: 196 -WPERRTVLVIAHRLSTVERADQI 218
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 67.7 bits (165), Expect = 3e-13
Identities = 65/237 (27%), Positives = 102/237 (43%), Gaps = 40/237 (16%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI------------VGRNTLDAGTI- 76
G+ +K +NL+V + L+GPSGCGKTT L I GR LD I
Sbjct: 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 77 -----KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD----QIETRS---- 123
++ R+ +G + Q+ +S+ + + + D ++ RS
Sbjct: 75 GPRVDPVAMRR--RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGA 132
Query: 124 ---KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
E+ L+ P LSGGQQ+R+ A +L P++L++DEPT LDP + I
Sbjct: 133 ALWDEVKDRLKTPAT-----GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI 187
Query: 181 WDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
D + ++ TIII TH + +A + +G LV H + L D
Sbjct: 188 EDLMTDLK-KVTTIIIVTHNMHQAARVSDTTSFF---LVGDLVEHGPTDQLFTNPRD 240
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 67.2 bits (164), Expect = 3e-13
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-- 85
G+ +L ++L+V + + GPSGCGK+TLL + + +GT+ +S
Sbjct: 12 LAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLK 71
Query: 86 -------IGYMPQELALHGELSIRETFRY-YGYMFDMTDDQIETRSKEILKLLELPPA-- 135
+ Y Q AL G+ ++ + + + D + ++L LP +
Sbjct: 72 PEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPD---RAAALDLLARFALPDSIL 127
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
K + LSGG+++RI+ +L PK+L+LDE T LD
Sbjct: 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDE 166
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 68.9 bits (169), Expect = 3e-13
Identities = 75/253 (29%), Positives = 128/253 (50%), Gaps = 28/253 (11%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI-----KLSFR-----QIS 84
L G LNV ++ L+G +G GK+T++ + G T DAG+I +++F Q +
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 85 DIGYMPQELALHGELSIRETF---RYYGYMFDMTD-DQIETRSKEILKLLELP-PAKKIV 139
IG + QEL L +L+I E R + F D ++ + ++L L L + K+V
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV 139
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
G LS G+Q+ + A L K++I+DEPT L ++ ++ ++E+ G+ I+ +H
Sbjct: 140 GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISH 199
Query: 200 YIEEA-KGAHNIGLMRDDQYIGRLVHHDIVE-SLVE-----ALED-----ALRHGNVINK 247
++E + ++ + RD Q+I D+ E SL+E LED G V K
Sbjct: 200 RLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRKLEDQYPRLDKAPGEVRLK 259
Query: 248 VDLVDGRGSIDEV 260
VD + G G +++V
Sbjct: 260 VDNLSGPG-VNDV 271
Score = 52.7 bits (127), Expect = 9e-08
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 25/153 (16%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHG------ 97
+ +I G+ G G G+T L+ + G +G + L ++ PQ+ +G
Sbjct: 277 KGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRS--PQDGLANGIVYISE 334
Query: 98 ---------ELSIRET--------FRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVG 140
+S++E F G D+Q L ++ P ++ +G
Sbjct: 335 DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG 394
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
LSGG Q++++ A L+ PK+LILDEPT G+D
Sbjct: 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 67.7 bits (165), Expect = 4e-13
Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK-------------LSF 80
VLKGLNL+ + + GL+G +GCGK+TL + G G + L+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 81 RQ-ISDIGYMPQELALHGELS--IRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK- 136
RQ ++ + P++ + ++ I + R G + + +I R E L L++ +
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG----VPEAEITRRVDEALTLVDAQHFRH 131
Query: 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
+ + LS GQ++R++ A +L+ + L+LDEPT GLDP + ++ + G +II
Sbjct: 132 QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVII 191
Query: 197 TTHYIE 202
++H I+
Sbjct: 192 SSHDID 197
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 68.3 bits (168), Expect = 4e-13
Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 20/166 (12%)
Query: 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80
AV +Y G V+KG++L+V + + L+GPSGCGK+TLL + G + +G I +
Sbjct: 8 AVRKSYD--GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGG 65
Query: 81 RQIS-------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL- 132
R ++ DI + Q AL+ +S+RE Y + M +IE R E ++LEL
Sbjct: 66 RVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE 125
Query: 133 -----PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
P LSGGQ++R++ +++ P + + DEP LD
Sbjct: 126 PLLDRKPR-----ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 67.4 bits (165), Expect = 4e-13
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV------------------GRNTL 71
G+ ++ +NLN+ + +GPSGCGK+T+L + G +
Sbjct: 15 GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY 74
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRET----FRYYGYMFDMTDDQIETRS---- 123
G ++ R IG + Q +SIR+ + G D++ +S
Sbjct: 75 GPGVDPVAVR--RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGA 132
Query: 124 ---KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
E+ L+ P G LSGGQQ+R+ A ++ P +L++DEP LDPI + I
Sbjct: 133 NLWNEVKDRLDKPG-----GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAI 187
Query: 181 WDRLKEMALNGKTIIITTHYIEEA 204
D + E+ TI+I TH +++A
Sbjct: 188 EDLINELK-QDYTIVIVTHNMQQA 210
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 67.0 bits (163), Expect = 6e-13
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL------------NCIVGRNTLDAGTIK 77
G + LK +N+ V E ++ L+GPSGCGK+T L N G L +
Sbjct: 27 GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86
Query: 78 LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKK 137
+ ++ P E+ + + ++ + +F+ + R + +LE
Sbjct: 87 ILSPEVD-----PIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENA 141
Query: 138 IVGA----------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
+ A LSGGQQ+R+ A +L +P++L+ DEPT LDPI + I
Sbjct: 142 LRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIE 201
Query: 182 DRLKEMALNGKTIIITTHYIEEA 204
+ + ++ N TI+I TH +++A
Sbjct: 202 ELISDLK-NKVTILIVTHNMQQA 223
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 68.6 bits (168), Expect = 6e-13
Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 29/244 (11%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IE + V+ +Y + VLKGL + ++ L+GPSG GK+T+ +
Sbjct: 479 IEFQD---VSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535
Query: 74 GTIKLSFRQISDIG--YMPQELALHGEL------SIRETFRYYGYMFDMTDDQIETRSKE 125
G + L + Y+ +++AL G+ S+RE Y + D D++I +K
Sbjct: 536 GQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYG--LTDTPDEEIMAAAKA 593
Query: 126 ILK---LLELPPAKKIV-----GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
++E P LSGGQ++RI+ A +L+ P++LILDE T LD
Sbjct: 594 ANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECE 653
Query: 178 QIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
Q++ + + +T+++ H + + A I +++ + H ++E +
Sbjct: 654 QLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED-----QG 705
Query: 238 ALRH 241
+H
Sbjct: 706 CYKH 709
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 66.9 bits (163), Expect = 7e-13
Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 28/214 (13%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI------ 65
I+EVK S Y G + +++++ ++ + L+GPSGCGK+T L I
Sbjct: 20 HILEVKD----LSIY--YGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL 73
Query: 66 ------------VGRNTLDAGTIKLSFR-QISDIGYMPQELALHGELSIRETFRYYGYMF 112
G N LD+ ++ R +I + P +I +Y G
Sbjct: 74 IPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERR 133
Query: 113 DMTDDQI--ETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
D+I E+ +K L +LSGGQQ+R+ A +L P +L+LDEP
Sbjct: 134 KSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPAS 193
Query: 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204
LDPI + I + + E+ +III TH +++A
Sbjct: 194 ALDPISNAKIEELITELK-EEYSIIIVTHNMQQA 226
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 67.8 bits (166), Expect = 8e-13
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 22/214 (10%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-------- 85
L ++L + + L+G SG GK+TL+N I D+G I L ++D
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE----LP-----PA 135
+ + Q++ L + +I Y G +IE R+ + LP P
Sbjct: 407 QVALVSQDVVLFND-TIANNIAY-GRTEQADRAEIE-RALAAAYAQDFVDKLPLGLDTPI 463
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
+ LSGGQ++R++ A +LL + +LILDE T LD +++ L+ + + G+T +
Sbjct: 464 GENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL-MQGRTTL 522
Query: 196 ITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
+ H + + A I +M D + + R H++++
Sbjct: 523 VIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 66.1 bits (162), Expect = 8e-13
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 28/192 (14%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--LDAGTIK-------------- 77
+LKG+NL V + +I+ ++GP+G GK+TL I G + + +GTI
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
Query: 78 ------LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
L+F+ +I + L L+ R R + K L LL
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNAR---RSARGEEPLDLLDFLKLLKAKLALLG 131
Query: 132 LPPA---KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ + + SGG+++R L PKL ILDE GLD +I+ + + +
Sbjct: 132 MDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR 191
Query: 189 LNGKTIIITTHY 200
++ +I THY
Sbjct: 192 EPDRSFLIITHY 203
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 65.6 bits (160), Expect = 2e-12
Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 20/187 (10%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS---------F 80
G +++ G+++ P + GLLGP+G GK+TLL + G DAGT+ L+
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 81 RQISDIGYMPQELALHGELSIRET-------FRYYGYMFDMTDDQIETRSKEILKLLELP 133
+ + + Q+ L++R+ R D + R+ +L L
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL- 130
Query: 134 PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI-IWDRLKEMALNGK 192
A + + LSGG+++R+ A +L PKLL+LDEPT LD + +Q+ ++E+A G
Sbjct: 131 -ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD-VRAQLETLALVRELAATGV 188
Query: 193 TIIITTH 199
T++ H
Sbjct: 189 TVVAALH 195
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 65.3 bits (160), Expect = 2e-12
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 29/172 (16%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQISDIGYMPQELALH-GELSIRET--- 104
L+GP+G GK+TLL + G L +G+I+ + + + + ELA H LS ++T
Sbjct: 27 LVGPNGAGKSTLLARMAG--LLPGSGSIQFAGQPLEA--WSAAELARHRAYLSQQQTPPF 82
Query: 105 ----FRYYG-YMFDMTD-DQIETRSKEILKLLELPPAKKI---VGALSGGQQRRISFAVS 155
F+Y + D T + + + E+ + L L K+ V LSGG+ +R+ A
Sbjct: 83 AMPVFQYLTLHQPDKTRTEAVASALNEVAEALGL--DDKLGRSVNQLSGGEWQRVRLAAV 140
Query: 156 LLH-----NP--KLLILDEPTVGLDPILSQIIWDRL-KEMALNGKTIIITTH 199
+L NP +LL+LDEP LD + Q DRL E+ G +++++H
Sbjct: 141 VLQVWPDINPAGQLLLLDEPMNSLD-VAQQAALDRLLSELCQQGIAVVMSSH 191
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 65.7 bits (160), Expect = 2e-12
Identities = 52/194 (26%), Positives = 97/194 (50%), Gaps = 21/194 (10%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL--- 78
VT ++ H L+ + VP I L+G +G GK+TL ++G L +G I +
Sbjct: 12 VTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ 69
Query: 79 ----SFRQISDIGYMPQ--ELALHGELSIRETFRY--YGYMFDMT-----DDQIETRSKE 125
+ ++ + + Y+PQ E+ + + + YG+M + D QI T +
Sbjct: 70 PTRQALQK-NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALA 128
Query: 126 ILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
+ ++E + +G LSGGQ++R+ A ++ ++++LDEP G+D I L+
Sbjct: 129 RVDMVEF--RHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186
Query: 186 EMALNGKTIIITTH 199
E+ GKT++++TH
Sbjct: 187 ELRDEGKTMLVSTH 200
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 65.6 bits (160), Expect = 2e-12
Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 23/210 (10%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------- 84
L ++ + E L+G +G GK+TL+ +GTI ++ I+
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 85 ---DIGYMPQ--ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKK 137
+ + Q E L E ++ + + F ++D+ + ++ + LK + L K
Sbjct: 83 LRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK 141
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGGQ RR++ A + + P++L LDEP GLDP + + K+ G T+I+
Sbjct: 142 SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILV 201
Query: 198 THYIEE-AKGAHNIGLMRDDQYIGRLVHHD 226
TH +++ A+ A ++ ++ G+L+ H
Sbjct: 202 THNMDDVAEYADDVLVLEH----GKLIKHA 227
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 64.4 bits (157), Expect = 3e-12
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 13 IIEVKHSVAVTSAYKKIGNHV--VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT 70
I+EV H G H +L G+ L V + L+G SG GK+TLL + G +
Sbjct: 6 IVEVHH----LKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD 61
Query: 71 LDAGTIKLSFRQIS-------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117
+G + L + + +G++ Q L L+ E + +
Sbjct: 62 GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSR 121
Query: 118 QIETRSKEILKLLELPPAKKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
Q +K +L+ L L + A LSGG+Q+R++ A + P +L DEPT LD
Sbjct: 122 QSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181
Query: 177 SQIIWDRLKEMALN---GKTIIITTH 199
I D L +LN G T+I+ TH
Sbjct: 182 GDKIADLL--FSLNREHGTTLILVTH 205
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 64.4 bits (158), Expect = 4e-12
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG 87
++G +L ++L + ++ +LGP+G GK+TLL + G + D+G ++L+ R ++D
Sbjct: 11 RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD-- 68
Query: 88 YMPQELAL-------HGELS----IRETF---RYYGYMFDMTDDQIETRSKEILKLLELP 133
+ P ELA H LS + E R + DD + + + L L
Sbjct: 69 WSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL- 127
Query: 134 PAKKIVGALSGGQQRRISFAVSLL------HNPKLLILDEPTVGLDP 174
A + LSGG+Q+R+ A L P+ L+LDEPT LD
Sbjct: 128 -AGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 64.5 bits (157), Expect = 4e-12
Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 41/231 (17%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
V+ K G + ++ ++ ++ G++G SG GK+TLL C+ GR D GT R
Sbjct: 6 VSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR 65
Query: 82 QI------------------SDIGYMPQEL-----------ALHGELSIRETFRYYGYMF 112
++ G++ Q A GE + R+YG
Sbjct: 66 SGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG--- 122
Query: 113 DMTDDQIETRSKEILKLLELPPAK--KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
I +++ L+ +E+ P + + A SGG Q+R+ A +L+ P+L+ +DEPT
Sbjct: 123 -----NIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTG 177
Query: 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAK-GAHNIGLMRDDQYI 219
GLD + + D L+ + + G +II TH + A+ A + +M+ + +
Sbjct: 178 GLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV 228
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 64.1 bits (156), Expect = 4e-12
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 15/191 (7%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
V+ AY +G L+G+ ++ ++ L G SG GK+TLL I G AG I S
Sbjct: 7 VSKAY--LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGH 64
Query: 82 QIS------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR-SKEILK 128
I+ IG + Q+ L + ++ + + + D I R S + K
Sbjct: 65 DITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDK 124
Query: 129 LLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ L AK LSGG+Q+R+ A ++++ P +L+ DEPT LD LS+ I +E
Sbjct: 125 VGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184
Query: 189 LNGKTIIITTH 199
G T+++ TH
Sbjct: 185 RVGVTVLMATH 195
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 64.5 bits (158), Expect = 4e-12
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 23/159 (14%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L L+L V ++ ++GP+G GKTT+++ I G+ D G++ F G ++A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL--FGGTDLTGLPEHQIA 75
Query: 95 LHG--------------------ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP 134
G EL++ + +F + + R +E+L+ + L
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 135 -AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
A ++ G LS GQ++ + + L+ +PKLL+LDEP G+
Sbjct: 136 EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 64.4 bits (157), Expect = 5e-12
Identities = 49/185 (26%), Positives = 95/185 (51%), Gaps = 16/185 (8%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS------DIGY 88
L +NL + + +G +G GK+T++ + G + G++++ I+ DI
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 89 MPQELALHGELSIRETFR-------YYGYM-FDMTDDQIETRSKEILKLLELPPA--KKI 138
+ +++ L + + F +G F ++ ++ E ++E L L+ + + +K
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKN 142
Query: 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITT 198
LSGGQ RR++ A L PK+L+LDEPT GLDP + + K++ +G TI++ T
Sbjct: 143 PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202
Query: 199 HYIEE 203
H +++
Sbjct: 203 HLMDD 207
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 64.3 bits (156), Expect = 6e-12
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 24/220 (10%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCI------------------VGRNTLDAG-T 75
++G+++++ NK+ ++GPSGCGK+T + + G+N D
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 76 IKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA 135
I RQI + P + ++ R + D+I + + L +
Sbjct: 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD 142
Query: 136 K--KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193
K K LSGGQQ+R+ A +L PK+L++DEP LDPI + + + + + + T
Sbjct: 143 KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-SELT 201
Query: 194 IIITTHYIEEAKGAHNIG--LMRDDQYIGRLVHHDIVESL 231
I I TH +++A + D+ IG++V + +
Sbjct: 202 IAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 63.9 bits (155), Expect = 6e-12
Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 30/195 (15%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------- 84
L +N+ + +N I L+GPSGCGK+T L + N L G IK+ I
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIYSNNF 81
Query: 85 DIGYMPQELALHGE------LSIRETFRYYGYMFDMTD----DQIETRSKEILKLLELPP 134
DI + +++ + + +SI + Y + D D+I +S + L
Sbjct: 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK 141
Query: 135 AKKIVGALS--GGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
K ALS GGQQ+R+ A +L P ++++DEPT LDPI + +++E+ +N K
Sbjct: 142 DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST----GKIEELIINLK 197
Query: 193 ---TIIITTHYIEEA 204
TIII TH +++A
Sbjct: 198 ESYTIIIVTHNMQQA 212
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 64.0 bits (156), Expect = 6e-12
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 37/205 (18%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI-----KLSFRQI-------------SDIG 87
++ G++G SG GKTTLL CI GR T DAGT+ R + ++ G
Sbjct: 33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92
Query: 88 YMPQE----LALH-------GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK 136
++ Q L + GE + R+YG + D +E ++ ++ +LP
Sbjct: 93 FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRT- 151
Query: 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTII 195
SGG Q+R+ A +L+ P+L+ +DEPT GLD + + D L+ + G ++
Sbjct: 152 -----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206
Query: 196 ITTHYIEEAK-GAHNIGLMRDDQYI 219
I TH + A+ A + +M+ Q +
Sbjct: 207 IVTHDLAVARLLADRLMVMKQGQVV 231
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 63.9 bits (155), Expect = 7e-12
Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 23/224 (10%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
G + V + L + +P+ ++GP+GCGK+TLL + T G + L I
Sbjct: 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK 77
Query: 86 -----IGYMPQELALHGELSIRETF---RY-YGYMFD---MTDDQIETRSKEILKLLELP 133
IG + Q G+++++E RY + +F D++ T++ + + L
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL- 136
Query: 134 PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI-IWDRLKEM-ALNG 191
A + V LSGGQ++R A+ L +++LDEPT LD I QI + + L E+ G
Sbjct: 137 -ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD-ISHQIDLLELLSELNREKG 194
Query: 192 KTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVES-LVE 233
T+ H + +A + A ++ +R+ + + + +IV + L+E
Sbjct: 195 YTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIE 238
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 65.1 bits (159), Expect = 7e-12
Identities = 57/208 (27%), Positives = 106/208 (50%), Gaps = 30/208 (14%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQISDI---- 86
VLKG++L++ ++ ++G SG GK+TL+N I+G LD +GT +++ + ++ +
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILG--CLDKPTSGTYRVAGQDVATLDADA 79
Query: 87 ---------GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL----- 132
G++ Q L L+ + + Q R++E+L+ L L
Sbjct: 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE 139
Query: 133 -PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
P++ LSGGQQ+R+S A +L++ ++++ DEPT LD + + L ++ G
Sbjct: 140 YQPSQ-----LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRG 194
Query: 192 KTIIITTHYIEEAKGAHNIGLMRDDQYI 219
T+II TH + A A + +RD + +
Sbjct: 195 HTVIIVTHDPQVAAQAERVIEIRDGEIV 222
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 64.1 bits (156), Expect = 7e-12
Identities = 60/204 (29%), Positives = 94/204 (46%), Gaps = 38/204 (18%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQIS 84
G +K +N ++ + ++GPSGCGK+T L I N L G + I
Sbjct: 50 GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI- 108
Query: 85 DIGYMPQELALHGEL------------SIRETFRYYGYMFDMTD----DQIETRS----- 123
G E+ L ++ SI + Y + + D ++I +S
Sbjct: 109 -YGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA 167
Query: 124 --KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
E+ L+ K +G LSGGQQ+R+ A +L P++L+LDEPT LDP + I
Sbjct: 168 LWDEVSDRLD----KNALG-LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIE 222
Query: 182 DRLKEMALNGK-TIIITTHYIEEA 204
D ++E L G TI+I TH +++A
Sbjct: 223 DLIQE--LRGSYTIMIVTHNMQQA 244
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 65.0 bits (159), Expect = 8e-12
Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 37/235 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG---RNTLDAGTIKLSFRQISDIGYMP 90
+KG++ ++ + L+G SG GK+ I+G + + F +
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84
Query: 91 QEL-ALHG--------------------ELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
++L + G + E R + ++ R+ E+L+L
Sbjct: 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH---RGLSRAAARARALELLEL 141
Query: 130 LELPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
+ +P +K + A LSGGQ++R+ A++L + P LLI DEPT LD + I D LK
Sbjct: 142 VGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLK 201
Query: 186 EM-ALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDA 238
E+ A G I+ TH + + A + +M+ G +V E+L A +
Sbjct: 202 ELQAELGMAILFITHDLGIVRKFADRVYVMQH----GEIVETGTTETLFAAPQHP 252
Score = 58.8 bits (143), Expect = 8e-10
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 47/234 (20%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL----DAGTIKLSFRQISDIG 87
+ G++L + + GL+G SG GK+TL G L G I+ + I G
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDID--G 352
Query: 88 YMPQEL-AL-----------HGELS--------IRETFRYYGYMFDMTDDQIETRSKEIL 127
+E+ L +G LS I E R + ++ + + R E L
Sbjct: 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP--KLSAAERDQRVIEAL 410
Query: 128 KLLELPPA--KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD-PILSQIIWDRL 184
+ + L PA + SGGQ++RI+ A +L+ P+L++LDEPT LD + +Q++ D L
Sbjct: 411 EEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL-DLL 469
Query: 185 KEMALNGK---TIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEA 234
+ L K + + +H + + H + +MRD G++V E++
Sbjct: 470 R--DLQQKHGLSYLFISHDLAVVRALCHRVIVMRD----GKIVEQGPTEAVFAN 517
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 63.5 bits (155), Expect = 8e-12
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 26/161 (16%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-EL 93
L L+ +V ++ L+GP+G GKTTL++ I G+ G ++ F +D+ +P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEG--EVLFDGDTDLTKLPEHRI 78
Query: 94 ALHG------------ELSIRETFR---------YYGYMFDMTDDQIETRSKEILKLLEL 132
A G L++RE + + ++ R E+L + L
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEE-RRRIDELLATIGL 137
Query: 133 PP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
++ LS GQ++ + + L +PKLL+LDEP G+
Sbjct: 138 GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 65.4 bits (159), Expect = 9e-12
Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L G+ ++PE + ++G GCGK++LL+ ++ G + + + Y+PQ+
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMK----GSVAYVPQQAW 709
Query: 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA--KKIVGA----LSGGQQR 148
+ + S+RE +G + Q + +L LE+ P+ + +G LSGGQ++
Sbjct: 710 IQND-SLRENI-LFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 767
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL--KEMALNGKTIIITTHYI 201
R+S A ++ N + + D+P +D + + I++ + E L KT I+ TH I
Sbjct: 768 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI 822
Score = 44.9 bits (106), Expect = 3e-05
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 35/165 (21%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY---- 88
+VL+ +N+ + + G++G +G GK++L + N G I + I+ IG
Sbjct: 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLR 1359
Query: 89 -----MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA-- 141
+PQ+ L S+R + D +E+ LEL K V A
Sbjct: 1360 FKITIIPQDPVLFSG-SLRMNLDPFSQYSD----------EEVWWALELAHLKTFVSALP 1408
Query: 142 -------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
LS GQ++ + A +LL K+L+LDE T +D
Sbjct: 1409 DKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 63.4 bits (155), Expect = 2e-11
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 26/163 (15%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
+++G+ L +NL +P I + G SG GKT+L+N I G G I L+ R + D
Sbjct: 8 QQLGDLC-LT-VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDA 65
Query: 86 ------------IGYMPQELALHGELSIRETFRY--YGYMFDMTDDQIETRSKEILKLLE 131
IGY+ Q+ L +R RY M D I+ LL
Sbjct: 66 EKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDK--------IVALLG 117
Query: 132 LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ P + G+LSGG+++R++ +LL P+LL++DEP LD
Sbjct: 118 IEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 62.6 bits (152), Expect = 2e-11
Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 30/192 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-E 92
VLK +NL + + ++ + G +G GKT+LL I+G G IK S R I + Q
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----ISFSSQFS 107
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK-------LLELPPAKKIVGA---- 141
+ G +I+E +G +D E R K ++K + + P V
Sbjct: 108 WIMPG--TIKENI-IFGVSYD------EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI 158
Query: 142 -LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR--LKEMALNGKTIIITT 198
LSGGQ+ RIS A ++ + L +LD P LD + I++ K MA KT I+ T
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA--NKTRILVT 216
Query: 199 HYIEEAKGAHNI 210
+E K A I
Sbjct: 217 SKMEHLKKADKI 228
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 61.8 bits (150), Expect = 3e-11
Identities = 54/204 (26%), Positives = 103/204 (50%), Gaps = 25/204 (12%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VL ++ ++ E ++ ++G SG GK+TLL+ + G +T +G + + + +S +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSS----- 78
Query: 94 ALHGELSIRE---TFRYYGYMFDMT---------------DDQIETRSKEILKLLELPP- 134
A EL ++ ++++ + D T +I +R+ E+L + L
Sbjct: 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR 138
Query: 135 AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKT 193
A LSGG+++R++ A +L++NP+L++ DEPT LD + I+ L E+ L G
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTA 198
Query: 194 IIITTHYIEEAKGAHNIGLMRDDQ 217
++ TH ++ AK MRD +
Sbjct: 199 FLVVTHDLQLAKRMSRQLEMRDGR 222
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 60.8 bits (148), Expect = 5e-11
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK--------------LSFRQ 82
LNL++ ++ L+G SG GK+ I+G L G + LS R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILG--LLPPGLTQTSGEILLDGRPLLPLSIRG 61
Query: 83 ISDIGYMPQE--LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVG 140
I + Q A + ++ Q E L+ + LP ++++
Sbjct: 62 R-HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLK 120
Query: 141 A----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKTII 195
LSGG +R+ A++LL P LI DEPT LD + + L+E+ L G I+
Sbjct: 121 KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGIL 180
Query: 196 ITTHYIEE-AKGAHNIGLMRDDQYIGRLVHHDI 227
+ TH + A+ A + +M D + + R +I
Sbjct: 181 LITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 61.3 bits (149), Expect = 6e-11
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 117 DQIETRSKEILKLLELPPAKKIV-GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
++I R E LK + + ++ LSGGQ++R++ A L P+ +I DEPT LDP
Sbjct: 119 EEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
Query: 176 LSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRD 215
+ + + +KE+ G TII+ THY+EEA A I +M
Sbjct: 179 GRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDS 219
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 61.0 bits (148), Expect = 7e-11
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 23/182 (12%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L L+ V +I L+GP+G GK+TLL + G T +G+I+ + + + + ELA
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFAGQPLE--AWSATELA 71
Query: 95 LH--------GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGG 145
H + Y D ++ L L + LSGG
Sbjct: 72 RHRAYLSQQQTPPFAMPVWHYLT--LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGG 129
Query: 146 QQRRISFAVSLLH-----NP--KLLILDEPTVGLDPILSQIIWDR-LKEMALNGKTIIIT 197
+ +R+ A +L NP +LL+LDEP LD + Q DR L + G I+++
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD-VAQQSALDRLLSALCQQGLAIVMS 188
Query: 198 TH 199
+H
Sbjct: 189 SH 190
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 61.0 bits (148), Expect = 8e-11
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 23/190 (12%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQIS-- 84
G + VL+ ++ ++ + GLLG +G GK+TLL+ + R G I++ S+ +
Sbjct: 15 GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPLQ 73
Query: 85 ----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI-LKLL--ELPPAKK 137
G +PQ++ + + R+ YG +D++I ++E+ LK + + P
Sbjct: 74 KWRKAFGVIPQKVFIFSG-TFRKNLDPYG---KWSDEEIWKVAEEVGLKSVIEQFPGQLD 129
Query: 138 IV-----GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
V LS G ++ + A S+L K+L+LDEP+ LDPI Q+I LK+ A
Sbjct: 130 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQ-AFADC 188
Query: 193 TIIITTHYIE 202
T+I++ H IE
Sbjct: 189 TVILSEHRIE 198
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 60.9 bits (147), Expect = 9e-11
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 38/232 (16%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VL +++ P + L+GP+G GKTT L + N +G +R D+ +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-----YRYSGDV--LLGGR 88
Query: 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEIL---KLLELPPAKKIVGA--------- 141
++ + E R G +F + + +L + +L P K+ G
Sbjct: 89 SIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVG 148
Query: 142 ---------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
LSGGQQ+ + A +L NP++L+LDEPT LDP ++ I + ++
Sbjct: 149 LWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208
Query: 187 MALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDA 238
+A II+T + + A+ + L D GRLV E L + + A
Sbjct: 209 LADRLTVIIVTHNLAQAARISDRAALFFD----GRLVEEGPTEQLFSSPKHA 256
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 59.3 bits (144), Expect = 1e-10
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 32/167 (19%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L+ L++++P N + + G SG GK+TL+N + Y +
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN---------------------EGLYASGKAR 49
Query: 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAV 154
L L F +F DQ++ L L L + + LSGG+ +R+ A
Sbjct: 50 LISFLP---KFSRNKLIFI---DQLQFLIDVGLGYLTL---GQKLSTLSGGELQRVKLAS 100
Query: 155 SLLHNPK--LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
L P L ILDEP+ GL + + +K + G T+I+ H
Sbjct: 101 ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 60.4 bits (147), Expect = 1e-10
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI------- 86
+L G++L++ ++ +LGP+G GK+TLL + G + D+G + L+ ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 87 --GYMPQELALHGELSIRETFRY----YGYMFDMTDD-QIETRSKEILKLLELPPAKKIV 139
+PQ +L +++E + + + +D +I ++ L L A +
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGL--AGRDY 133
Query: 140 GALSGGQQRRISFAVSL--LHNP----KLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193
LSGG+Q+R+ A L L P + L LDEPT LD +++A G
Sbjct: 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGA 193
Query: 194 IIITTH 199
++ H
Sbjct: 194 VLAVLH 199
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 59.6 bits (145), Expect = 1e-10
Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 39/187 (20%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR-------------NTLDA 73
K +LK + V ++ +LG G G +TLL + R N +
Sbjct: 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74
Query: 74 GTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP 133
+ +I Y+ +E L++RET + + + E ++
Sbjct: 75 KEFAEKYP--GEIIYVSEEDVHFPTLTVRETLDF----------ALRCKGNEFVR----- 117
Query: 134 PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA--LNG 191
+SGG+++R+S A +L+ +L D T GLD + I ++ MA L
Sbjct: 118 -------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT 170
Query: 192 KTIIITT 198
T +
Sbjct: 171 TTFVSLY 177
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 60.5 bits (146), Expect = 1e-10
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS---------------FRQ 82
++L V + L+G +G GK+TLL + G G + + R+
Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84
Query: 83 ISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA--KKIVG 140
+ + E L E +++ + F + ++ E + E L+++ L +K
Sbjct: 85 KVGVVFQFPESQLFEETVLKDV-AFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF 143
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
LSGGQ RR++ A L P++L+LDEPT GLDP + + + +G+T+++ TH
Sbjct: 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL 203
Query: 201 IEE 203
+++
Sbjct: 204 MDD 206
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 60.4 bits (146), Expect = 1e-10
Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 21/221 (9%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG---- 74
+V+ T A K L +L +NK+ ++G +G GK+T++ G + G
Sbjct: 11 NVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70
Query: 75 ---TIKLSFRQISDIGYMPQELALHGELSIRETFR-------YYGYMFDMTDDQIETRSK 124
I + ++I ++ + +E+ L + + F+ +G + ++ +++ E K
Sbjct: 71 GDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPV-NLGENKQEAYKK 129
Query: 125 --EILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
E+LKL++LP K+ LSGGQ+RR++ A + + L+LDEPT GLDP +
Sbjct: 130 VPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDF 189
Query: 181 WDRLKEMALN-GKTIIITTHYIEEA-KGAHNIGLMRDDQYI 219
+ + + K II+ TH +++ + A + +M + + I
Sbjct: 190 INLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 59.2 bits (143), Expect = 2e-10
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-SDIGYM 89
+ +L+ ++ ++P + L G +G GKTTLL I G + G I + I D+
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY 72
Query: 90 PQELALHGE-------LSIRETFRYYGYMFDMTDDQIE--TRSKEILKLLELPPAKKIVG 140
++L G L++RE Y F I R + L++ P G
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENC-LYDIHFSPGAVGITELCRLFSLEHLIDYP-----CG 126
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LS GQ+R+++ + KL +LDEP V LD + I +++E G +++T+H
Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 61.1 bits (148), Expect = 2e-10
Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 26/195 (13%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-E 92
VLK ++ + + ++ + G +G GK++LL I+G G IK S R I + PQ
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----ISFSPQTS 496
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-------PPAKKIV-----G 140
+ G +I++ +F ++ D E R ++K +L P K V
Sbjct: 497 WIMPG--TIKDNI-----IFGLSYD--EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGI 547
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
LSGGQ+ RIS A ++ + L +LD P LD + + I++ ++ KT I+ T
Sbjct: 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSK 607
Query: 201 IEEAKGAHNIGLMRD 215
+E K A I L+ +
Sbjct: 608 LEHLKKADKILLLHE 622
Score = 58.8 bits (142), Expect = 1e-09
Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 34/203 (16%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL--- 78
+T+ Y + G VL+ L+ +V + GLLG +G GK+TLL+ ++ R G I++
Sbjct: 1223 LTAKYTEAGR-AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDGV 1280
Query: 79 SFRQIS------DIGYMPQELALHGELSIRETFR-----YYGYMFDMTDDQIETRSKEI- 126
S+ ++ G +PQ++ + TFR Y + +D++I ++E+
Sbjct: 1281 SWNSVTLQTWRKAFGVIPQKVFI-----FSGTFRKNLDPYEQW----SDEEIWKVAEEVG 1331
Query: 127 LK-LLELPPAK---KIVGA---LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
LK ++E P K +V LS G ++ + A S+L K+L+LDEP+ LDP+ QI
Sbjct: 1332 LKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQI 1391
Query: 180 IWDRLKEMALNGKTIIITTHYIE 202
I LK+ + + T+I++ H +E
Sbjct: 1392 IRKTLKQ-SFSNCTVILSEHRVE 1413
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 60.4 bits (147), Expect = 2e-10
Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 41/252 (16%)
Query: 3 KISIKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL 62
K I+R +I E ++ VT Y L+ +N +P K L+G SG GK+T+
Sbjct: 332 KRVIERAKGDI-EFRN---VTFTYPG-KEVPALRNINFKIPAGKTVALVGRSGSGKSTIA 386
Query: 63 NCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI--- 119
N + +D G I L + D Y LA S+R + +D I
Sbjct: 387 NLLTRFYDIDEGEILLDGHDLRD--Y---TLA-----SLRNQVALVSQNVHLFNDTIANN 436
Query: 120 ------ETRSKE-ILKLLELPPA----KK-------IVG----ALSGGQQRRISFAVSLL 157
E S+E I + + A K ++G LSGGQ++RI+ A +LL
Sbjct: 437 IAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL 496
Query: 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217
+ +LILDE T LD + I L E+ N +T ++ H + + A I ++ D +
Sbjct: 497 RDSPILILDEATSALDTESERAIQAALDELQKN-RTSLVIAHRLSTIEKADEILVVEDGE 555
Query: 218 YIGRLVHHDIVE 229
+ R H +++
Sbjct: 556 IVERGTHAELLA 567
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 60.6 bits (147), Expect = 2e-10
Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 44/255 (17%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVV--LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69
II+V++ V+ Y + VV + ++L V E +I+G++G SG GKTTL I G
Sbjct: 278 PIIKVRN---VSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL 334
Query: 70 TLDAGTIKLSFRQISD------------------IGYMPQELALHGELSIRETFRYYGYM 111
+G +++ R + IG + QE L+ ++ +
Sbjct: 335 EPTSG--EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTE-AIG 391
Query: 112 FDMTDDQIETRSKEILKLLELPPAK------KIVGALSGGQQRRISFAVSLLHNPKLLIL 165
++ D+ ++ LK++ K K LS G++ R++ A L+ P+++IL
Sbjct: 392 LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVIL 451
Query: 166 DEPTVGLDPI----LSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220
DEPT +DPI ++ I +EM +T II +H ++ LMRD G
Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEM---EQTFIIVSHDMDFVLDVCDRAALMRD----G 504
Query: 221 RLVHHDIVESLVEAL 235
++V E +VE L
Sbjct: 505 KIVKIGDPEEIVEEL 519
Score = 50.2 bits (120), Expect = 5e-07
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHY 200
LSGG+++R+ A L P L + DEPT LDP ++++ + L+E G ++++T+H+
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 201 IE 202
E
Sbjct: 229 PE 230
Score = 37.1 bits (86), Expect = 0.008
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67
KK VLK ++ + E ++ G+LG SG GK+ L++ + G
Sbjct: 8 KKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG 48
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 60.3 bits (147), Expect = 3e-10
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 42/226 (18%)
Query: 8 RIDPEIIEVKHSVAVTSAYKKIGNHV---------------VLKGLNLNVPENKIYGLLG 52
+DP + E + A + ++ +V +++ +L + + L+G
Sbjct: 453 PVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVG 512
Query: 53 PSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI---------GYMPQELALHGELSIRE 103
SG GK+T+ + G +G I +I + Q++ L ++R+
Sbjct: 513 GSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRD 571
Query: 104 TFRYYGYMFDMT--DDQIETRSK------EILKLLELPPAKKIVGA--LSGGQQRRISFA 153
++D T D + K I A+ G LSGGQ++R+ A
Sbjct: 572 NLT----LWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA 627
Query: 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+L+ NP +LILDE T LDP +II D L+ G T II H
Sbjct: 628 RALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAH 670
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 59.8 bits (145), Expect = 4e-10
Identities = 54/217 (24%), Positives = 101/217 (46%), Gaps = 27/217 (12%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K G LK +NL V +I+ LLG +G GK+TL+ + G + GTI ++ +
Sbjct: 13 KSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKL 72
Query: 86 ---------IGYMPQELALHGELSIRETFRYYGYM-------FDMTD-DQIETRSKEILK 128
IG + QEL++ EL++ E Y G ++ D ++ R+ +L
Sbjct: 73 DHKLAAQLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLL 131
Query: 129 LLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL-DPILSQI--IWDRL 184
+ L + V LS ++ + A +L+ + K++I+DEPT L + + + I ++L
Sbjct: 132 RVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL 191
Query: 185 KEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220
++ G I+ +H + E + +M+D +
Sbjct: 192 RK---EGTAIVYISHKLAEIRRICDRYTVMKDGSSVC 225
Score = 53.2 bits (128), Expect = 5e-08
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 24/192 (12%)
Query: 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----------D 85
+ ++ +V +I G G G G+T L+NC+ G + G I+L+ + IS
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 86 IGYMPQ---ELALHGELSIRETF---------RYYGYM--FDMTDDQIETRSKEILKLLE 131
+ Y+ + + SI + Y G M F D+Q ++ L L+
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 132 LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
+ + LSGG Q+++ + L P+++I DEPT G+D I+ ++++A +G
Sbjct: 400 CHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG 459
Query: 192 KTIIITTHYIEE 203
K I++ + + E
Sbjct: 460 KVILMVSSELPE 471
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 59.7 bits (145), Expect = 4e-10
Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 39/225 (17%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMP 90
+H L+ +N + ++ G+ GP+G GK+TLL+ I + G I+ ++ +
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKL---- 382
Query: 91 QELALHGELSI-RETFRYYGYMF-------------DMTDDQIETRSKEILKL------- 129
Q + L++ +T ++F D T +IE + +L
Sbjct: 383 QLDSWRSRLAVVSQT----PFLFSDTVANNIALGRPDATQQEIE----HVARLASVHDDI 434
Query: 130 LELPPAKKI-VGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
L LP VG LSGGQ++RIS A +LL N ++LILD+ +D I L
Sbjct: 435 LRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL 494
Query: 185 KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
++ G+T+II+ H + A I +M+ R H + +
Sbjct: 495 RQWG-EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 59.6 bits (145), Expect = 4e-10
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 118 QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
Q+E R E+L L L P + +LSGG R+ + +L+ NP +L+LDEPT LD
Sbjct: 134 QLENRINEVLAQLGLDPDAAL-SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 54.6 bits (132), Expect = 2e-08
Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 27/137 (19%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTI----KLSFRQISDIGYMPQELALHGELSIRETF 105
L+GP+GCGKTTLL ++G+ D+G I KL ++ Y Q A EL +T
Sbjct: 350 LIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKL------EVAYFDQHRA---ELDPEKTV 400
Query: 106 RYYGYMFDMTDDQIET----RSKEILKLLE---LPP--AKKIVGALSGGQQRRISFAVSL 156
M ++ + + E R + +L L+ P A V ALSGG++ R+ A
Sbjct: 401 -----MDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLF 455
Query: 157 LHNPKLLILDEPTVGLD 173
L LLILDEPT LD
Sbjct: 456 LKPSNLLILDEPTNDLD 472
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 59.7 bits (145), Expect = 4e-10
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 25/205 (12%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------S 84
L +NL V + I+ L+G +G GK+TLL C+ G D+G+I ++I +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 85 DIGYMPQELALHGELSIRETF---RYYGYMFDMTDDQIETRSKEILKLL--ELPPAKKIV 139
I + QEL L + S+ + RY + D++ +K I L ++ P K V
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-V 132
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI----LSQIIWDRLKEMALNGKTII 195
LS Q + I A + +N K++I+DEPT L L II +LKE G I+
Sbjct: 133 ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTII-RKLKE---RGCGIV 188
Query: 196 ITTHYIEEA-KGAHNIGLMRDDQYI 219
+H +EE + I ++RD Q+I
Sbjct: 189 YISHKMEEIFQLCDEITILRDGQWI 213
Score = 49.3 bits (118), Expect = 1e-06
Identities = 48/217 (22%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
I+EV++ ++ ++ ++ ++ + +I G+ G G +T ++ + G
Sbjct: 250 ILEVRNLTSL--------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS 301
Query: 73 AGTIKLSFRQISDIGYMPQELALHGELSIRETFR---------------------YYGYM 111
AGTI L ++I++ + E HG + E R Y +
Sbjct: 302 AGTITLHGKKINN--HNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKV 359
Query: 112 FDMTDDQIETRSKEILKLLEL--PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169
+ + ++++ ++ ++ + + P + +G+LSGG Q+++ LL P++L+LDEPT
Sbjct: 360 GLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419
Query: 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206
G+D I+ + E+A K III + + E G
Sbjct: 420 RGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLG 456
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 58.1 bits (141), Expect = 5e-10
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 35/177 (19%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKL----------SFRQISDIGYMPQELALHGEL 99
+LGPSG GK+TLLN I G T +G++ L S R +S + QE L L
Sbjct: 30 ILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVS---MLFQENNLFSHL 86
Query: 100 SIRETFRYYGYMFD----MTDDQIETRSKEILK------LLE-LPPAKKIVGALSGGQQR 148
++ + G + + Q E I + LL LP G LSGGQ++
Sbjct: 87 TVAQNI---GLGLNPGLKLNAAQREKL-HAIARQMGIEDLLARLP------GQLSGGQRQ 136
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITTHYIEEA 204
R++ A L+ +L+LDEP LDP L Q + + ++ + T+++ +H +E+A
Sbjct: 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA 193
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 59.3 bits (144), Expect = 5e-10
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 26/198 (13%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG------RNTLDA-GTIKLSFRQ 82
+ +L L+ V + + ++GP+G GK+TLL+ I G N L G + S
Sbjct: 271 NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET 330
Query: 83 ISDI----GYMPQELALHGELSIRETFR---YYGYMFD------MTDDQIETRSKEILKL 129
I DI GY+ +LH + + + R G+ FD D+ + +++ L +
Sbjct: 331 IWDIKKHIGYVSS--SLHLDYRVSTSVRNVILSGF-FDSIGIYQAVSDRQQKLAQQWLDI 387
Query: 130 LELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L + A +LS GQQR +L+ +P LLILDEP GLDP+ Q++ + +
Sbjct: 388 LGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL 447
Query: 188 ALNGKT-IIITTHYIEEA 204
G+T ++ +H+ E+A
Sbjct: 448 ISEGETQLLFVSHHAEDA 465
Score = 36.9 bits (86), Expect = 0.010
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
LS G+ R+ +L+ P LLILDEP GLD
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLD 167
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 58.4 bits (142), Expect = 6e-10
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 51/211 (24%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTI------------------KLSFRQISDIGYMP 90
G++G SG GKTTLLN + R DAG + + ++ G++
Sbjct: 36 GIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95
Query: 91 QELA--LHGELS----IRETF-----RYYGYMFDMTDDQIETRSKEILKLLELPPAK--K 137
Q L ++S I E R+YG I + + L+ +E+ A+
Sbjct: 96 QHPRDGLRMQVSAGGNIGERLMAVGARHYG--------DIRATAGDWLERVEIDAARIDD 147
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK----EMALNGKT 193
+ SGG Q+R+ A +L+ +P+L+ +DEPT GLD + + D L+ E+ L
Sbjct: 148 LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL---A 204
Query: 194 IIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223
++I TH + A+ AH + +M+ GR+V
Sbjct: 205 VVIVTHDLAVARLLAHRLLVMKQ----GRVV 231
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 57.8 bits (140), Expect = 7e-10
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 18/136 (13%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRE 103
E+++ G+LGP+G GKTT + + G D G I++ +S Y PQ + E ++R+
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS---YKPQYIKADYEGTVRD 80
Query: 104 TFRYYGYMFDMTDD-----QIETRSKEILKLLELPPA-KKIVGALSGGQQRRISFAVSLL 157
+ +T D +T EI K L++ + V LSGG+ +R++ A L
Sbjct: 81 ------LLSSITKDFYTHPYFKT---EIAKPLQIEQILDREVPELSGGELQRVAIAACLS 131
Query: 158 HNPKLLILDEPTVGLD 173
+ + +LDEP+ LD
Sbjct: 132 KDADIYLLDEPSAYLD 147
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 57.9 bits (140), Expect = 8e-10
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L ++L E + GL+G +G GK+TL N I G + G + + ++ +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD----RNGEVSVIAISAG 95
Query: 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-----PPAKKIVGALSGGQQRR 149
L G+L+ E + +I+ + +I++ EL P KK S G + +
Sbjct: 96 LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKK----YSSGMRAK 151
Query: 150 ISFAVSLLHNPKLLILDEP-TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
+ F++++ NP +L++DE +VG D +Q D++ E KTI +H + + +
Sbjct: 152 LGFSINITVNPDILVIDEALSVG-DQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVR 207
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 57.4 bits (139), Expect = 8e-10
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 29/186 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL------------SFR 81
VL+ ++L+V + L GPSG GK+TLL + D G I + R
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 82 QI-----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEIL-------KL 129
++ + IGY+ Q L + +S + + + ++ ++L +L
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERL 145
Query: 130 LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
L PA SGG+Q+R++ A + + +L+LDEPT LD ++ + ++E
Sbjct: 146 WSLAPA-----TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA 200
Query: 190 NGKTII 195
G ++
Sbjct: 201 RGAALV 206
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 58.7 bits (143), Expect = 9e-10
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 15/145 (10%)
Query: 35 LKGLNLNVPENKIY-----GLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYM 89
L +L V +IY G++GP+G GKTT + G D G + + I Y
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELK----ISYK 405
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGGQQR 148
PQ + + ++ + R ++ EI+K L+L K V LSGG+ +
Sbjct: 406 PQYIKPDYDGTVEDLLRSITDDLG--SSYYKS---EIIKPLQLERLLDKNVKDLSGGELQ 460
Query: 149 RISFAVSLLHNPKLLILDEPTVGLD 173
R++ A L + L +LDEP+ LD
Sbjct: 461 RVAIAACLSRDADLYLLDEPSAHLD 485
Score = 35.6 bits (83), Expect = 0.025
Identities = 45/204 (22%), Positives = 77/204 (37%), Gaps = 69/204 (33%)
Query: 39 NLNVP-ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHG 97
L +P E K+ G+LGP+G GKTT + + +G + + +
Sbjct: 92 GLPIPKEGKVTGILGPNGIGKTTAVKIL-------SGELIPNLGDYEE------------ 132
Query: 98 ELSIRETFRYY------GYMFDMTDDQIETRSK--------------------------- 124
E S E + + Y + + +I+ K
Sbjct: 133 EPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGK 192
Query: 125 --EILKLLELPPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
E+++ L L + + LSGG+ +R++ A +LL + DEPT LD I
Sbjct: 193 LDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD------IR 246
Query: 182 DRL------KEMALNGKTIIITTH 199
RL +E+A GK +++ H
Sbjct: 247 QRLNVARLIRELA-EGKYVLVVEH 269
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 58.4 bits (142), Expect = 1e-09
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 54/238 (22%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IEV VT Y+ G ++L ++L + + ++GPSG GK+TLL ++G T ++
Sbjct: 452 IEVDR---VTFRYRPDGP-LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES 507
Query: 74 GTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS-------KEI 126
G++ Y Q+LA L ++ R G + + + ++ + S
Sbjct: 508 GSVF----------YDGQDLA---GLDVQAVRRQLGVV--LQNGRLMSGSIFENIAGGAP 552
Query: 127 LKLLELPPAKKIVG---------------------ALSGGQQRRISFAVSLLHNPKLLIL 165
L L E A ++ G LSGGQ++R+ A +L+ P++L+
Sbjct: 553 LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLF 612
Query: 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
DE T LD I+ + L+ L I+I H + + A I ++ GR+V
Sbjct: 613 DEATSALDNRTQAIVSESLE--RLKVTRIVI-AHRLSTIRNADRIYVLDA----GRVV 663
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 58.4 bits (142), Expect = 1e-09
Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 26/189 (13%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----SFRQISD---- 85
L ++ + +++ L+G +G GK+TLL + G DAG+I + F +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 86 -IGYMPQELALHGELSIRETFRYYGYM---FDMTDD-QIETRSKEILKLL--ELPPAKKI 138
+ + QEL L E+++ E Y G + + + + ++E L+ L ++ P
Sbjct: 80 GVAIIYQELHLVPEMTVAENL-YLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP- 137
Query: 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP----ILSQIIWDRLKEMALNGKTI 194
+ LS GQ++ + A +L N +++ DEPT L L ++I L+ G+ I
Sbjct: 138 LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI-RELRA---EGRVI 193
Query: 195 IITTHYIEE 203
+ +H +EE
Sbjct: 194 LYVSHRMEE 202
Score = 44.1 bits (105), Expect = 5e-05
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 133 PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
P ++++ LSGG Q++ L + K+++LDEPT G+D I++ + E+A G
Sbjct: 388 PSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGV 447
Query: 193 TIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLV 232
++ + + E G A I +MR+ + G L E
Sbjct: 448 AVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQA 488
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 58.6 bits (142), Expect = 1e-09
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
T + ++ V+L+ ++++VP K+ +LG +G GK+TLL ++ + + G + + R
Sbjct: 663 KTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-WAER 721
Query: 82 QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD----------QIETRSKEILKLLE 131
I+ Y+PQ+ + + T R FD D Q+E ++ LE
Sbjct: 722 SIA---YVPQQAWI-----MNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLE 773
Query: 132 LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
+K V LSGGQ+ R+S A ++ N + +LD+P LD + + + + AL G
Sbjct: 774 TEIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832
Query: 192 KTIIITTHYI 201
KT ++ TH +
Sbjct: 833 KTRVLATHQV 842
Score = 34.8 bits (80), Expect = 0.055
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 43/195 (22%)
Query: 33 VVLKGLNLNV-PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ 91
+VL+G++ + P K+ G++G +G GK+TLL + + G I+++ R+I G
Sbjct: 1324 LVLRGVSFRIAPREKV-GIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG---- 1378
Query: 92 ELALHGELSIRETFRYYGY------MFDMT-----DDQIETRSKEILKLLELPPAKKIVG 140
+RE R + +FD T D +E S E+ LEL ++ V
Sbjct: 1379 ---------LRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVA 1429
Query: 141 ALSG---------------GQQRRISFAVSLLHNPKLLIL-DEPTVGLDPILSQIIWDRL 184
+ S GQ++ + A +LL IL DE T +DP L + I +
Sbjct: 1430 SESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATV 1489
Query: 185 KEMALNGKTIIITTH 199
A + T+I H
Sbjct: 1490 MS-AFSAYTVITIAH 1503
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 57.3 bits (139), Expect = 1e-09
Identities = 56/236 (23%), Positives = 100/236 (42%), Gaps = 52/236 (22%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
EII V+H ++ Y LK ++ +V E + ++G +G GK+TL + G
Sbjct: 4 EIIRVEH---ISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP 59
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ------------- 118
+AGTI + +S E ++ + R G +F D+Q
Sbjct: 60 EAGTITVGGMVLS-------------EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG 106
Query: 119 ----------IETRSKEILKL------LELPPAKKIVGALSGGQQRRISFAVSLLHNPKL 162
+ R + L+ L P + LSGGQ++R++ A L P +
Sbjct: 107 LENIGVPREEMVERVDQALRQVGMEDFLNREPHR-----LSGGQKQRVAIAGVLALQPDI 161
Query: 163 LILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITTHYIEEAKGAHNIGLMRDDQ 217
+ILDE T LDP + + + ++++ T++ TH ++EA A + +M +
Sbjct: 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGE 217
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 56.7 bits (136), Expect = 2e-09
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 117 DQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL---HNPKLLILDEPTVGLD 173
++ + L+ L K ++ +S G +R ++ ++LL LL++DEP GL
Sbjct: 165 KLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLH 224
Query: 174 PILSQIIWDRLKEMALNGKTIIITTH 199
P L + + + LKE++ G +I TTH
Sbjct: 225 PKLLRKLVELLKELSEKGAQLIFTTH 250
Score = 28.2 bits (62), Expect = 5.2
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMP 90
+ ++GP+G GK+ LL + L + + L I +P
Sbjct: 1 LNVIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLP 44
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 56.5 bits (136), Expect = 3e-09
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 12/191 (6%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L+ +NL + + + G++G +G GK+TL + G G + +S D +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 95 LHGELSIRETFRYYGYMFD---------MTDDQIETRSKEILKLLELPPAK---KIVGAL 142
L G + ++ G + + IE R + L E+ K + L
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTL 137
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE 202
SGGQ + ++ A L P+ LI DE T LDP + +R+K++ GKTI+ TH +E
Sbjct: 138 SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE 197
Query: 203 EAKGAHNIGLM 213
E A I +M
Sbjct: 198 ELHDADRIIVM 208
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 56.4 bits (136), Expect = 3e-09
Identities = 26/64 (40%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201
LSGGQQ+R+ A ++ P +L++DEP LDP+ + +I + ++E+ N TII+ TH +
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN-FTIIVVTHSM 208
Query: 202 EEAK 205
++AK
Sbjct: 209 KQAK 212
Score = 41.4 bits (97), Expect = 2e-04
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNC 64
G+ +L +NL++ + ++ +GPSGCGK+T L C
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRC 50
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 56.2 bits (136), Expect = 3e-09
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 48/201 (23%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
LK ++ + E + +LG +G GK+T+ + G +G IK+ IS
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISK-------- 75
Query: 94 ALHGELSIRETFRYYGYMFDMTDDQ---------------------------IETRSKE- 125
+++E + G +F D+Q I+ +K+
Sbjct: 76 -----ENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKV 130
Query: 126 -ILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+ L+ P LSGGQ++R++ A L NP+++I DE T LDP + I +
Sbjct: 131 GMEDYLDKEPQN-----LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185
Query: 185 KEMALNG-KTIIITTHYIEEA 204
++ KT+I TH ++EA
Sbjct: 186 VDLRKTRKKTLISITHDMDEA 206
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 54.4 bits (132), Expect = 7e-09
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 46/198 (23%)
Query: 34 VLKGLNLNV-PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG----- 87
VLK ++ ++ P K+ G++G +G GK++LL + L +G+I + IS IG
Sbjct: 19 VLKNISFSIKPGEKV-GIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77
Query: 88 ----YMPQE-LALHGELSIRET---FRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
+PQ+ + G +IR F Y +D+ E+ + LE K+ V
Sbjct: 78 SRISIIPQDPVLFSG--TIRSNLDPFGEY------SDE-------ELWQALERVGLKEFV 122
Query: 140 GALSG---------------GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+L G GQ++ + A +LL K+L+LDE T +DP +I +
Sbjct: 123 ESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 182
Query: 185 KEMALNGKTIIITTHYIE 202
+E A T++ H ++
Sbjct: 183 RE-AFKDCTVLTIAHRLD 199
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 55.5 bits (134), Expect = 8e-09
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 28/179 (15%)
Query: 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI--------KLSFRQI---- 83
G+ L + E + G++G SGCGK+T I+G G + + +
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97
Query: 84 SDIGYMPQE-LA-LH-----GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-- 134
SDI + Q+ LA L+ GE+ I E R Y ++ +++ R K ++ + L P
Sbjct: 98 SDIQMIFQDPLASLNPRMTIGEI-IAEPLRT--YHPKLSRQEVKDRVKAMMLKVGLLPNL 154
Query: 135 AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD-PILSQII---WDRLKEMAL 189
+ SGGQ +RI A +L+ PKL+I DEP LD I +Q++ +EM L
Sbjct: 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGL 213
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 55.7 bits (134), Expect = 9e-09
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 45/191 (23%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ--E 92
L ++L + + I ++G +GCGK+TL G Y+PQ E
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-------------------YIPQEGE 398
Query: 93 LALHGELSIRETFRYYGYMFD-------MTDDQIETRSKE---------ILKLLELPPAK 136
+ L G ++ Y +F + DD I E L+ LE+
Sbjct: 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKV 458
Query: 137 KIVG-------ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR-LKEMA 188
KI ALS GQQ+R++ + L + +L+ DE DP + ++ L ++
Sbjct: 459 KIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK 518
Query: 189 LNGKTIIITTH 199
GKTIII +H
Sbjct: 519 RQGKTIIIISH 529
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 54.3 bits (131), Expect = 1e-08
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 28/197 (14%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY 88
+ + +LKGLNL++ + +I+ ++GP+G GK+TL I G + F+ S +
Sbjct: 17 VNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDL 76
Query: 89 MPQELALHGELSIRETFRY----------------YG----YMFDMTDDQIE--TRSKEI 126
P+E A L I F+Y Y + D +E E
Sbjct: 77 EPEERA---HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEK 133
Query: 127 LKLLELPPA---KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
LKL+ + P+ + + SGG+++R L + +L ILDE GLD +II +
Sbjct: 134 LKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEG 193
Query: 184 LKEMALNGKTIIITTHY 200
+ ++ + +II+ THY
Sbjct: 194 INKLMTSENSIILITHY 210
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 54.2 bits (131), Expect = 1e-08
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI----LSQIIWDRLKEMALNGKTIII 196
+LSGGQQ+R+ A + P++L+LDEP LDPI + ++I LK+ T++I
Sbjct: 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELI-TELKQ----DYTVVI 210
Query: 197 TTHYIEEA-KGAHNIGLMRDDQYIGRLVHHD 226
TH +++A + + M Y+G L+
Sbjct: 211 VTHNMQQAARCSDYTAFM----YLGELIEFG 237
Score = 52.3 bits (126), Expect = 5e-08
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL 62
G LK +NL++ +N++ +GPSGCGK+TLL
Sbjct: 24 GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLL 56
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 55.4 bits (134), Expect = 1e-08
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 30/198 (15%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---------IGYMPQELALHGELS 100
++GP+G GK+TL+N + +G I + I I + Q+ L S
Sbjct: 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-S 424
Query: 101 IRETFRYYGYMFDMTDDQIETRSK--EILKLLELPPAK--KIVG----ALSGGQQRRISF 152
I + R G D TD+++ ++ + +E P +VG LSGG+++R++
Sbjct: 425 IEDNIRV-GRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAI 482
Query: 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGL 212
A +LL +P +LILDE T LD + L E+ T II AH +
Sbjct: 483 ARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFII----------AHRLST 532
Query: 213 MRDDQYIGRLVHHDIVES 230
+R+ I + +VES
Sbjct: 533 VRNADRILVFDNGRVVES 550
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 54.0 bits (130), Expect = 1e-08
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
+L+GLNL V +++ ++GP+G GK+TL + GR + + F+ + P++
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75
Query: 94 ALHG--------------------ELSIRETFRYYGY----MFDMTDDQIETRSKEILKL 129
A G + ++ Y G FD D +E E + L
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQ-DLME----EKIAL 130
Query: 130 LELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
L++P + + SGG+++R + P+L ILDE GLD +I+ D +
Sbjct: 131 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNS 190
Query: 187 MALNGKTIIITTHY 200
+ ++ II THY
Sbjct: 191 LRDGKRSFIIVTHY 204
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 54.4 bits (131), Expect = 2e-08
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 18/112 (16%)
Query: 122 RSKEILKLLELP-PAKKI---VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD-PIL 176
R+ ++L + +P PA ++ LSGG +R+ A+++ PKLLI DEPT LD I
Sbjct: 130 RAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQ 189
Query: 177 SQII-----WDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
+QII + + MAL ++IT A+ AH I +M Y G++V
Sbjct: 190 AQIIELLLELQQKENMAL----VLITHDLALVAEAAHKIIVM----YAGQVV 233
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 54.0 bits (130), Expect = 2e-08
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE-MALNGKTIIITTHY 200
LSGGQ++R++ A L PK++ILDE T LDP + I +++ N T+I TH
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203
Query: 201 IEEAKGAHNIGLMRDDQYI 219
I+EA A + ++ D + +
Sbjct: 204 IDEANMADQVLVLDDGKLL 222
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 54.3 bits (131), Expect = 2e-08
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTT----LLNCIV--GRNTLDAGTIK--- 77
+ + ++VV+K ++ + + GL+G SG GK+T LL I G D +
Sbjct: 294 RTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLN 353
Query: 78 ----LSFRQISDIGYMPQELALHGELS----IRETFRYYGYMFDMTDDQIETRSKEILKL 129
L R + + +L+ L+ I E R + ++ Q E + +++
Sbjct: 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH--QPTLSAAQREQQVIAVMEE 411
Query: 130 LELPPA--KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ L P + SGGQ++RI+ A +L+ P L+ILDEPT LD
Sbjct: 412 VGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
Score = 53.2 bits (128), Expect = 6e-08
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM--ALNGKTIIITTH 199
LSGG+++R+ A++LL P+LLI DEPT LD + I L+E+ LN + IT +
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 200 YIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
K A + +M++ GR V + +L A
Sbjct: 217 LSIVRKLADRVAVMQN----GRCVEQNRAATLFSA 247
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 52.9 bits (127), Expect = 3e-08
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAGTIKLS---------FRQISDIGYMPQELALHGELSIR 102
G +G GKTTLL + G +++G I++ R ++ +G++P L +LS
Sbjct: 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP---GLKADLSTL 100
Query: 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKL 162
E + + Q+ + I+ L +V LS GQ++R++ A L L
Sbjct: 101 ENLHFLCGLHGRRAKQMPGSALAIVGLAGY--EDTLVRQLSAGQKKRLALARLWLSPAPL 158
Query: 163 LILDEPTVGLDP----ILSQIIWDRLKEMALNGKTIIITTH 199
+LDEP LD +++++I L+ G ++TTH
Sbjct: 159 WLLDEPYANLDLEGITLVNRMISAHLR----GGGAALVTTH 195
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 54.0 bits (130), Expect = 3e-08
Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 21/182 (11%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMP 90
V+++ L+ VP + GP+GCGK++L + + G + + + Y+P
Sbjct: 464 GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKG--KLFYVP 521
Query: 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV----------- 139
Q + ++R+ Y DM + K++ ++L+ I+
Sbjct: 522 QRPYM-TLGTLRDQIIYPDSSEDMKRRGL--SDKDLEQILDNVQLTHILEREGGWSAVQD 578
Query: 140 --GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGG+++RI+ A H P+ ILDE T + + ++ +E G T+
Sbjct: 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSV 635
Query: 198 TH 199
+H
Sbjct: 636 SH 637
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 53.2 bits (128), Expect = 3e-08
Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 45/231 (19%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-IGYMPQ 91
++ G++L + ++ L+G SG GK+ L C L AG + + R + D P
Sbjct: 17 PLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDGKPVAPC 74
Query: 92 EL----------------------ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
L H RET G D D + L+
Sbjct: 75 ALRGRKIATIMQNPRSAFNPLHTMHTHA----RETCLALGKPAD--DATL----TAALEA 124
Query: 130 LELPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
+ L A +++ +SGG +R+ A++LL +I DEPT LD + I D L+
Sbjct: 125 VGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLE 184
Query: 186 E-MALNGKTIIITTHYIE-EAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
+ +++ TH + A+ A ++ +M GR+V VE+L A
Sbjct: 185 SIVQKRALGMLLVTHDMGVVARLADDVAVMSH----GRIVEQGDVETLFNA 231
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 52.4 bits (126), Expect = 4e-08
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
++++++ V + KI N++ +L E K+ + GPSGCGK+TLL + +
Sbjct: 6 PLLQLQN-VGYLAGDAKILNNI---SFSLRAGEFKL--ITGPSGCGKSTLLKIVASLISP 59
Query: 72 DAGTIKLSFRQIS---------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122
+GT+ IS + Y Q L G+ ++ + + + + D
Sbjct: 60 TSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPD--PAI 116
Query: 123 SKEILKLLELPPA--KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ L+ LP K + LSGG+++RIS +L PK+L+LDE T LD
Sbjct: 117 FLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 53.6 bits (129), Expect = 4e-08
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 55/234 (23%)
Query: 22 VTSAYKKIGNHVVLKGLNLN-VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80
V++ Y G+ ++L + LN VP ++I GLLG +G GK+TL+ + G +G I L+
Sbjct: 318 VSAGY---GDRIILDSIKLNLVPGSRI-GLLGRNGAGKSTLIKLLAGELAPVSGEIGLA- 372
Query: 81 RQISDIGYMPQ---------ELALH--GELSIRET---FRYYGYMFDMTDDQIETRSKEI 126
+ I +GY Q E L L+ +E R Y F D++
Sbjct: 373 KGIK-LGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKV------- 424
Query: 127 LKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
+ SGG++ R+ A+ + P LL+LDEPT LD + Q + + L +
Sbjct: 425 ---------TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALID 475
Query: 187 MALNGKTIIITTHYIEEAKGAHNIGLMR---DDQYIGRLVHHDIVESLVEALED 237
G ++++ H+ L+R DD Y LVH VE LED
Sbjct: 476 --FEGALVVVS----------HDRHLLRSTTDDLY---LVHDGKVEPFDGDLED 514
Score = 45.5 bits (108), Expect = 2e-05
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 33/167 (19%)
Query: 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL------ALH 96
P K+ GL+G +GCGK+TLL + + D G+ +F + ++ QE AL
Sbjct: 26 PGQKV-GLVGKNGCGKSTLLALLKNEISADGGSY--TFPGNWQLAWVNQETPALPQPALE 82
Query: 97 GELSIRETFRYYGYMFDMTDDQ--------------------IETRSKEILKLLEL--PP 134
+ +R +++ I +R+ +L L
Sbjct: 83 YVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ 142
Query: 135 AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
++ V SGG + R++ A +L+ LL+LDEPT LD L +IW
Sbjct: 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD--LDAVIW 187
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 52.7 bits (127), Expect = 5e-08
Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 6/91 (6%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201
LSGGQQ+R+ A ++ P++L+LDEPT LDPI + I + + E+ + TI+I TH +
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-SKYTIVIVTHNM 227
Query: 202 EE-AKGAHNIGLMRDDQYIGRLVHHDIVESL 231
++ A+ + M Y+G+LV + ++L
Sbjct: 228 QQAARVSDYTAFM----YMGKLVEYGDTDTL 254
Score = 50.8 bits (122), Expect = 2e-07
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DA----GTIKLSFRQIS 84
G+ L +++ +P+N++ +GPSGCGK+TLL C N L D G I+L + I
Sbjct: 36 GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95
Query: 85 D 85
D
Sbjct: 96 D 96
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 53.3 bits (128), Expect = 6e-08
Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 38/199 (19%)
Query: 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS- 79
V AY+ HV +NL + ++ L+G +G GK+TL + G +G I L
Sbjct: 327 NVRFAYQDNAFHV--GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384
Query: 80 ----------FRQI-----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
+R++ SD Q L G+ S + ++ ++E K
Sbjct: 385 KPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWL--------QRLELAHK 436
Query: 125 EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS----QII 180
L K LS GQ++R++ ++LL +L+LDE DP Q++
Sbjct: 437 TSLNDGRFSNLK-----LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVL 491
Query: 181 WDRLKEMALNGKTIIITTH 199
LKE GKTI +H
Sbjct: 492 LPLLKEQ---GKTIFAISH 507
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 53.1 bits (128), Expect = 7e-08
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 26/179 (14%)
Query: 35 LKGLNLNVPENKIY-----GLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYM 89
L V E +IY G+LGP+G GKTT + + G D G+ + + Y
Sbjct: 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE-----EDLKVSYK 406
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRS--KEILKLLELPPA-KKIVGALSGGQ 146
PQ ++ + ++ + R + EI+K L L ++ V LSGG+
Sbjct: 407 PQYISPDYDGTVEDLLR------SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGE 460
Query: 147 QRRISFAVSLLHNPKLLILDEPTVGLDP----ILSQIIWDRLKEMALNGKTIIITTHYI 201
+R++ A +L L +LDEP+ LD I++++I R E N KT ++ H I
Sbjct: 461 LQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI-RRFIEN--NEKTALVVDHDI 516
Score = 42.7 bits (101), Expect = 2e-04
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 42/191 (21%)
Query: 39 NLNVPE-NKIYGLLGPSGCGKTTLLNCIVGR---------NTLDAGTIKLSFRQISDIGY 88
L P K+ G+LGP+G GK+T L + G + + FR +++
Sbjct: 93 RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRG-TELQN 151
Query: 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK-------------LLELPPA 135
++L GEL +Y D+ ++ + E+LK L L
Sbjct: 152 YFKKL-YEGELRAVHKPQY----VDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENV 206
Query: 136 -KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK------EMA 188
+ V LSGG+ +R++ A +LL + + DEP+ LD I RL E+A
Sbjct: 207 LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD------IRQRLNAARVIRELA 260
Query: 189 LNGKTIIITTH 199
+GK +I+ H
Sbjct: 261 EDGKYVIVVEH 271
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 52.7 bits (126), Expect = 8e-08
Identities = 53/209 (25%), Positives = 108/209 (51%), Gaps = 16/209 (7%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTT---LLNCIV----GRNTLDAGTI-KL 78
+K G + +K +L + E +I+ ++G SG GK+T LLN ++ G+ +D I K+
Sbjct: 36 EKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKI 95
Query: 79 SFRQISD-----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP 133
S ++ + I + Q AL +++ + + + + ++ ++ + L+ + L
Sbjct: 96 SDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE 155
Query: 134 P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL-KEMALNG 191
A LSGG ++R+ A +L NP +L++DE LDP++ + D L K A +
Sbjct: 156 NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 192 KTIIITTHYIEEA-KGAHNIGLMRDDQYI 219
+TI+ +H ++EA + I +M++ + +
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVV 244
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 51.7 bits (124), Expect = 1e-07
Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 20/197 (10%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD--------- 85
LK ++ N+P+ + ++G +G GK+T+ ++G + +G I + + I+D
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 86 IGYMPQELALHGELSIRETFRYYGYMFDMTD-----DQIETRSKEILKLLE-LPPAKKIV 139
IG + Q SI + Y F + + D++ R E LK ++ L A
Sbjct: 85 IGIVFQNPDNQFVGSIVK----YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP 140
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITT 198
ALSGGQ++R++ A L NP ++ILDE T LDP Q + D ++++ TII T
Sbjct: 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISIT 200
Query: 199 HYIEEAKGAHNIGLMRD 215
H + EA A ++ +M
Sbjct: 201 HDLSEAMEADHVIVMNK 217
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 52.3 bits (125), Expect = 1e-07
Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 27/179 (15%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L +NL +P + ++G +G GKT+L++ ++G + A T + R + Y+PQ ++
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-HAETSSVVIR--GSVAYVPQ-VS 688
Query: 95 LHGELSIRETFRY--------YGYMFDMTDDQIETRSKEILKLLELPPAKKI--VGA--- 141
++RE + Y D+T Q + L+L P + + +G
Sbjct: 689 WIFNATVRENILFGSDFESERYWRAIDVTALQHD---------LDLLPGRDLTEIGERGV 739
Query: 142 -LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+SGGQ++R+S A ++ N + I D+P LD ++ ++D + L GKT ++ T+
Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTN 798
Score = 40.0 bits (93), Expect = 0.001
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VL GL+ V ++ G++G +G GK+++LN + L+ G I + ++ G
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTD--- 1307
Query: 94 ALHGELSI--RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVG----------- 140
L LSI + + G + D E ++ + LE K ++
Sbjct: 1308 -LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVS 1366
Query: 141 ----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
S GQ++ +S A +LL K+L+LDE T +D +I ++E T+++
Sbjct: 1367 EGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE-EFKSCTMLV 1425
Query: 197 TTH 199
H
Sbjct: 1426 IAH 1428
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 52.2 bits (125), Expect = 1e-07
Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 26/207 (12%)
Query: 6 IKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI 65
IK + E ++ S V +++ VL+ LNL + + ++G SG GKTTLL I
Sbjct: 373 IKGLPNEFQDILESFGVR---QRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMI 429
Query: 66 VG--------RNTLDAGTIKLSFRQISDIGYMPQELALH-GELSIRETFRYYGYMFDMTD 116
+G + D+G +++ +S + +P E GE++I E R T
Sbjct: 430 LGAQKGRGEEKYRPDSGKVEVPKNTVSAL--IPGEYEPEFGEVTILEHLR------SKTG 481
Query: 117 DQIETRSKEILKLLELPPAKKIVGA---LSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
D + EIL L A LS GQ+ R A L P +L++DE LD
Sbjct: 482 DL--NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539
Query: 174 PILSQIIWDRLKEMALN-GKTIIITTH 199
+ + + ++ E+A G T+I+ TH
Sbjct: 540 ELTAVRVARKISELAREAGITLIVVTH 566
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 52.0 bits (125), Expect = 1e-07
Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 33/206 (16%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
I++ + V+ AY+ +++VL+ +NL+VP L+G +G GK+TL + ++G L
Sbjct: 341 IDIDN---VSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395
Query: 74 GTIKLSFRQISDIGY--MPQELAL--HGELSIRETF-------RYYGYMFDMTDDQIETR 122
G I+L R +S + + + Q +A+ + + +TF R D++++Q+ +
Sbjct: 396 GEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR------DISEEQV-WQ 448
Query: 123 SKEILKLLELPPA-----KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ E ++L EL + +G LS GQ++ ++ A L+ P++LILDE T +D
Sbjct: 449 ALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508
Query: 174 PILSQIIWDRLKEMALNGKTIIITTH 199
Q I L + + T+++ H
Sbjct: 509 SGTEQAIQQALAAVREH-TTLVVIAH 533
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 50.3 bits (121), Expect = 1e-07
Identities = 40/198 (20%), Positives = 62/198 (31%), Gaps = 65/198 (32%)
Query: 52 GPSGCGKTTLLNCIV------GRNTLDAGT--------------IKLSFRQISDIGYMPQ 91
G +G GKTT++ + G +KL+F + Y
Sbjct: 29 GQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKY--- 85
Query: 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQR--- 148
R + ++ I E L G SGG++
Sbjct: 86 -------TITRS--------LAILENVIFCHQGESNWPLLDMR-----GRCSGGEKVLAS 125
Query: 149 ---RISFAVSLLHNPKLLILDEPTVGLDP-----ILSQIIWDRLKEMALNGKTIIIT--- 197
R++ A + N +L LDEPT LD L++II +R + N + I+IT
Sbjct: 126 LIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQ--KNFQLIVITHDE 183
Query: 198 ------THYIEEAKGAHN 209
H K
Sbjct: 184 ELVDAADHIYRVEKDGRQ 201
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 49.3 bits (117), Expect = 2e-07
Identities = 34/178 (19%), Positives = 59/178 (33%), Gaps = 43/178 (24%)
Query: 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRET 104
++ ++GP G GKTTL + RE
Sbjct: 2 GEVILIVGPPGSGKTTLARAL-----------------------------------AREL 26
Query: 105 FRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLI 164
G + + + I + L L+ + K + SG + R++ A++ P +LI
Sbjct: 27 GPPGGGVIYIDGEDILEEVLDQLLLIIVGGKK---ASGSGELRLRLALALARKLKPDVLI 83
Query: 165 LDEPTVGLDPILSQIIWD-----RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217
LDE T LD ++ L + +I T E+ G + D +
Sbjct: 84 LDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRR 141
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 47.7 bits (114), Expect = 7e-07
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 142 LSGGQQRRISFAVSL---LHNPK-LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGG++ + A+ L P+ L ILDE GLDP Q + + + E + G +I+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 198 THY 200
TH
Sbjct: 138 THL 140
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 49.0 bits (117), Expect = 9e-07
Identities = 56/209 (26%), Positives = 84/209 (40%), Gaps = 54/209 (25%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG---RNTLDAGTIKLSFR----- 81
G+ + LN ++ + G++G SG GK+ ++G N G+ + R
Sbjct: 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86
Query: 82 -----------QISDI---------GYMP------QELALHGELSIRETFRYYGYMFDMT 115
QIS I YM + L LH +S E F
Sbjct: 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFE--------- 137
Query: 116 DDQIETRSKEILKLLELPPAKKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171
S +L +++P A+K + SGG ++R+ A++LL PKLLI DEPT
Sbjct: 138 ------ESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTA 191
Query: 172 LDPILSQIIWDRLKEMALNGKT-IIITTH 199
LD + I L E+ T II+ TH
Sbjct: 192 LDVTVQAQIMTLLNELKREFNTAIIMITH 220
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 48.3 bits (115), Expect = 1e-06
Identities = 49/173 (28%), Positives = 70/173 (40%), Gaps = 31/173 (17%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA--------GTIKLSFRQI 83
+L+ L+L + ++ LLG +G GK+TLL + G T G + L+ +
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 84 SDI---------GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEIL-KLLELP 133
+ I +PQ S RE Y + R EI + L L
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA 133
Query: 134 PAKKIVG----ALSGGQQRRISFAVSL--LH-------NPKLLILDEPTVGLD 173
A +VG LSGG+ R+ FA L L P+ L+LDEPT LD
Sbjct: 134 GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 47.7 bits (113), Expect = 1e-06
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 34/223 (15%)
Query: 20 VAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
V VT+ Y G+ + L +N+ +P ++ ++G GCGK++LL I+G G +
Sbjct: 1 VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60
Query: 79 SFRQISDIGYMPQELALHGEL------------SIRETFRYYGYMFDMTDDQIETRSKEI 126
S + S+ + + ++ E + G F+ + R K +
Sbjct: 61 SNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITF-GSPFN------KQRYKAV 113
Query: 127 LKLLELPPAKKI--------VGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
L P + +G LSGGQ++RI A +L N ++ LD+P LD
Sbjct: 114 TDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDI 173
Query: 175 ILSQIIWDR--LKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215
LS + LK + + +T+++ TH ++ A I M+D
Sbjct: 174 HLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKD 216
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 48.5 bits (115), Expect = 2e-06
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP----ILSQIIWDRLKEMALNGKTIII 196
+LSGGQ++RI+ A +LL PK+L+LDE T LD ++ + I D +K+ A KTII
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD-IKDKA--DKTIIT 1414
Query: 197 TTHYIEEAKGAHNIGLMRDDQYIGRLVH 224
H I K + I + + G V
Sbjct: 1415 IAHRIASIKRSDKIVVFNNPDRTGSFVQ 1442
Score = 47.7 bits (113), Expect = 4e-06
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI-IITTHY 200
LSGGQ++RIS A +++ NPK+LILDE T LD ++ + + N I II H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 201 IEEAKGAHNIGLMRDDQYIGRL-VHHDIVESLVEALEDALRHGN 243
+ + A+ I ++ + + + V + + E+ ++
Sbjct: 640 LSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNK 683
Score = 36.2 bits (83), Expect = 0.020
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI 65
+ K LN + E K Y +G SGCGK+T+L I
Sbjct: 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLI 431
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 47.4 bits (113), Expect = 3e-06
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 47/233 (20%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
IIEVK+ +T YK+ L ++ +V + + ++G +G GK+T + I G +
Sbjct: 4 IIEVKN---LTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE 60
Query: 73 AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ-------------- 118
+G I + ++ E ++ + G +F D+Q
Sbjct: 61 SGQIIIDGDLLT-------------EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL 107
Query: 119 ---------IETRSKEILKLLELPPAKKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEP 168
++ R E L+L+ + K+ A LSGGQ++R++ A ++ PK++ILDE
Sbjct: 108 ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA 167
Query: 169 TVGLDPI----LSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217
T LDP L + I + T+I TH ++E + + +M++ Q
Sbjct: 168 TSMLDPEGRLELIKTIKGIRDD---YQMTVISITHDLDEVALSDRVLVMKNGQ 217
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 46.3 bits (110), Expect = 4e-06
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY----- 88
VLK ++ V + G++G +G GK+TL+ + + G I++ IS I
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 89 ----MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSG 144
+PQ+ L T R FD D +EI L + LS
Sbjct: 83 SLTIIPQDPTL-----FSGTIRSNLDPFDEYSD------EEIYGALRVSEGGL---NLSQ 128
Query: 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
GQ++ + A +LL P++L+LDE T +D +I ++E TI+ H
Sbjct: 129 GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE-EFTNSTILTIAH 182
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 47.5 bits (113), Expect = 4e-06
Identities = 53/198 (26%), Positives = 75/198 (37%), Gaps = 50/198 (25%)
Query: 48 YGLLGPSGCGKTTLL-------------NC--------IVGRNT---------------- 70
YGL+G +G GKTT L NC +VG +T
Sbjct: 206 YGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQL 265
Query: 71 ------LDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
L A +L F + G + + + + Y + + E R+
Sbjct: 266 LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325
Query: 125 EILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
IL L P K SGG + RI+ A +L P LL+LDEPT LD L ++W
Sbjct: 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD--LHAVLW- 382
Query: 183 RLKEMALN-GKTIIITTH 199
L+ L KT I+ +H
Sbjct: 383 -LETYLLKWPKTFIVVSH 399
Score = 42.2 bits (99), Expect = 3e-04
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-DIGY 88
G ++ K LN + + ++GP+G GK+T+L I G +GT+ FR +
Sbjct: 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV---FRSAKVRMAV 576
Query: 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQ 146
Q +LS YM E + + L + A + + LSGGQ
Sbjct: 577 FSQHHVDGLDLSSNPLL----YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 632
Query: 147 QRRISFAVSLLHNPKLLILDEPTVGLD 173
+ R++FA P +L+LDEP+ LD
Sbjct: 633 KSRVAFAKITFKKPHILLLDEPSNHLD 659
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 46.8 bits (111), Expect = 8e-06
Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 43/200 (21%)
Query: 50 LLGPSGCGKTTLLNCI-------VGRNTLDAGTI----KLSFRQISDIGYMPQELALHGE 98
++GP+G GKTTL+N + VG+ +D I + S R+ I + Q+ L
Sbjct: 366 IVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRK--SIATVFQDAGLFNR 423
Query: 99 LSIRETFRYYGYMFDMTDDQI----ETRSKEILKLLELPPAKKIVGA----LSGGQQRRI 150
SIRE R TD+++ + + L +VG LSGG+++R+
Sbjct: 424 -SIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRL 480
Query: 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210
+ A ++L N +L+LDE T LD + + + + N T II AH +
Sbjct: 481 AIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFII----------AHRL 530
Query: 211 GLMRD-------DQYIGRLV 223
+R+ DQ GRL+
Sbjct: 531 STVRNADLVLFLDQ--GRLI 548
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 45.9 bits (109), Expect = 2e-05
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 139 VGALSGGQQRRISFA--------VSLLHNPKLLILDEPTVGLDP-ILSQIIWDRLKEMAL 189
+ LSGG++ S A + +LL LDEP LD L ++ + L+E+
Sbjct: 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLA-EILEELLS 871
Query: 190 NGKTIIITTH 199
+G+ III +H
Sbjct: 872 DGRQIIIISH 881
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 45.2 bits (107), Expect = 2e-05
Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 34/157 (21%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQIS------------DIGYMPQE 92
L+G SG GK+T GR L G I + ++I DI ++ Q+
Sbjct: 355 LVGESGSGKST-----TGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 93 --LALHGEL----SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSG 144
+L SI E R +G + R +L+ + L P A + SG
Sbjct: 410 PYASLDPRQTVGDSIMEPLRVHGLL---PGKAAAARVAWLLERVGLLPEHAWRYPHEFSG 466
Query: 145 GQQRRISFAVSLLHNPKLLILDEPTVGLD-PILSQII 180
GQ++RI A +L NPK++I DE LD I QII
Sbjct: 467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQII 503
Score = 44.1 bits (104), Expect = 6e-05
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 123 SKEILKLLELPPAKKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS- 177
+K +L + +P A+ I+ LSGG ++R+ A++L P +LI DEPT LD +
Sbjct: 146 AKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQA 205
Query: 178 ---QIIWDRLKEMALNGKTIIITTH 199
Q+I KEM++ +I TH
Sbjct: 206 QILQLIKVLQKEMSMG---VIFITH 227
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 44.7 bits (106), Expect = 4e-05
Identities = 58/257 (22%), Positives = 116/257 (45%), Gaps = 34/257 (13%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR-NTLDAGTIKLSFRQISDIGYMPQEL 93
L +NL+VP + ++G +G GKT+L++ ++G ++ + + Y+PQ +
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT----VAYVPQ-V 687
Query: 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKI--VGA----LSGGQQ 147
+ ++R+ +G FD + + L+L P + +G +SGGQ+
Sbjct: 688 SWIFNATVRDNI-LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQK 746
Query: 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITT---HYIEEA 204
+R+S A ++ N + I D+P LD + + ++D+ + L GKT ++ T H+
Sbjct: 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHF---- 802
Query: 205 KGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGNVINKVDLVDGRGSIDEVLSRQ 264
L + D+ I LVH +++ E+ +G + K L++ G ++E +
Sbjct: 803 -------LSQVDRII--LVHEGMIKE-EGTYEELSNNGPLFQK--LMENAGKMEEYVEEN 850
Query: 265 CTVSVD--VDRPAINEG 279
D +P N
Sbjct: 851 GEEEDDQTSSKPVANGN 867
Score = 32.4 bits (74), Expect = 0.29
Identities = 60/233 (25%), Positives = 99/233 (42%), Gaps = 60/233 (25%)
Query: 34 VLKGLNLNV-PENKIYGLLGPSGCGKTTLLNC---IV----GRNTLDAGTI-KLSFRQIS 84
VL GL+ + P K+ G++G +G GK+++LN IV GR +D I K +
Sbjct: 1254 VLHGLSFEISPSEKV-GIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLR 1312
Query: 85 DI-GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA-- 141
+ G +PQ L ++R F++ D E ++ + LE K ++
Sbjct: 1313 KVLGIIPQAPVLFSG-TVR---------FNL-DPFNEHNDADLWESLERAHLKDVIRRNS 1361
Query: 142 -------------LSGGQQRRISFAVSLLHNPKLLILDEPT----VGLDPILSQIIWDRL 184
S GQ++ +S A +LL K+L+LDE T V D ++ + I +
Sbjct: 1362 LGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 1421
Query: 185 KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYI-----GRLVHHDIVESLV 232
K + +II AH + + D I GR+V D E+L+
Sbjct: 1422 KSCTM----LII----------AHRLNTIIDCDRILVLDAGRVVEFDTPENLL 1460
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 43.7 bits (103), Expect = 5e-05
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 18/110 (16%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHY 200
L+ G+ +++ A++L + P+LLI DEPT ++P I+ L + N TI++ +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 201 IEE-AKGAHNIGLMRDDQYIGRLV------------HHDIVESLVEALED 237
++ ++ A I ++ Y G+ V HH ++L+ A+ D
Sbjct: 219 LQMISQWADKINVL----YCGQTVESAPSEELVTMPHHPYTQALIRAIPD 264
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 43.3 bits (102), Expect = 7e-05
Identities = 61/256 (23%), Positives = 114/256 (44%), Gaps = 52/256 (20%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVG------RNTLD------AGTIKLSFRQ--- 82
+++ + E +I GL+G SG GK+ + I G R T D ++LS R+
Sbjct: 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRK 85
Query: 83 -----ISDIGYMPQELALHGELSIRETFR------YYGYMFDMTDDQIETRSKEILKLLE 131
+S I PQ E R+ + Y G + + + R+ E+L +
Sbjct: 86 LVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-KRRAIELLHRVG 144
Query: 132 LPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
+ K + + L+ G+ +++ A++L + P+LLI DEPT ++P I+ L +
Sbjct: 145 IKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRL 204
Query: 188 ALN-GKTIIITTHYIEE-AKGAHNIGLMRDDQYIGRLV------------HHDIVESLVE 233
N TI++ +H ++ ++ A I ++ Y G+ V HH ++L+
Sbjct: 205 NQNNNTTILLISHDLQMLSQWADKINVL----YCGQTVETAPSKELVTTPHHPYTQALIR 260
Query: 234 ALED---ALRHGNVIN 246
A+ D A+ H + +N
Sbjct: 261 AIPDFGSAMPHKSRLN 276
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 43.0 bits (102), Expect = 8e-05
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
SGGQ++RI+ A +L+ +P +++ DEP LD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 40.6 bits (95), Expect = 3e-04
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 13/189 (6%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI---- 86
L L++ + I + G +GCGK++LL I G +G I I++I
Sbjct: 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71
Query: 87 -GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI--LKLLELPPAKKIVGALS 143
Y+ L L E+++ E +++ ++ + ET I KL +L K +LS
Sbjct: 72 CTYIGHNLGLKLEMTVFENLKFWSEIY----NSAETLYAAIHYFKLHDLLDEK--CYSLS 125
Query: 144 GGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE 203
G Q+ ++ A + L +LDE L ++ + + A +G +++++H
Sbjct: 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185
Query: 204 AKGAHNIGL 212
K A + L
Sbjct: 186 IKSAQILQL 194
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 41.2 bits (96), Expect = 3e-04
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITTHY 200
LSGGQ++R++ A + P+++ILDE T LDP Q I + E+ + T++ TH
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200
Query: 201 IEEAKGAHNIGLMRDDQYI 219
++EA + I +M+ + I
Sbjct: 201 LDEAASSDRILVMKAGEII 219
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 38.5 bits (91), Expect = 0.002
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
+ K L+G SG GK+TLLN ++ L G I
Sbjct: 84 KGKTSVLVGQSGVGKSTLLNALLPELVLATGEI 116
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 38.6 bits (90), Expect = 0.002
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR--QISDIGYMPQE 92
+K ++ + E + ++G +G GK+TL + G +G I ++ D + +
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 93 L---------ALHGELSIRETFRY-YGYMFDMTDDQIETRSKEILKLLELPP--AKKIVG 140
+ +L+ L I + + D+ +Q + E L+++ L P A
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH 148
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD-PILSQII 180
L+ GQ++R++ A +L+ PK++I DE LD + SQ+I
Sbjct: 149 MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLI 189
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 38.7 bits (90), Expect = 0.003
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 88 YMPQELALHGE----LSIRETFRYYGYMFDMTDDQIETRSKEILKL-LELPPAKKIVGAL 142
++PQ L + + I E Y F + + I + + L L+ P + + +L
Sbjct: 751 FLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLDYLPLGRPLSSL 810
Query: 143 SGGQQRRISFAVSLLH---NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
SGG+ +R+ A LL P L +LDEPT GL + + L+ + G T++I H
Sbjct: 811 SGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
Score = 35.2 bits (81), Expect = 0.041
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 139 VGALSGGQQRRISFAVSLLHNPKLL----ILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
+ LSGG+Q R + A L +L+ ILDEP++GL P + + + +K++ G T+
Sbjct: 474 LATLSGGEQERTALAKHL--GAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTV 531
Query: 195 IITTH 199
++ H
Sbjct: 532 LLVEH 536
Score = 28.6 bits (64), Expect = 5.0
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGA 207
P L +LDE LD + +L+ + G ++I H K A
Sbjct: 1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQA 1768
Score = 27.9 bits (62), Expect = 8.7
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLN 63
LK L +++P ++ + G SG GK++L+N
Sbjct: 611 LKDLTISLPLGRLTVVTGVSGSGKSSLIN 639
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 37.6 bits (88), Expect = 0.004
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 139 VGALSGGQQRRISFAVSLLHNPKLL----ILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
LSGG+ +RI A + L +LDEP++GL P + + + LK + G T+
Sbjct: 135 APTLSGGEAQRIRLATQI--GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTV 192
Query: 195 IITTH 199
++ H
Sbjct: 193 LVVEH 197
Score = 28.0 bits (63), Expect = 4.8
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTL 61
LK +++++P NK+ + G SG GK++L
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSL 37
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 37.5 bits (87), Expect = 0.004
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--DIGYMPQE 92
+K L+ + E + ++G +G GK+TL + G +G + + + D Y Q
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 93 LAL-----HGELSIRETFRYYGYMFDM-----TDDQIETRSKEI---LKLLELPP--AKK 137
+ + L+ R+ + D TD + E R K+I L+ + L P A
Sbjct: 89 IRMIFQDPSTSLNPRQRI---SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY 145
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD-PILSQII 180
L+ GQ++R+ A +L+ PK++I DE LD + SQ+I
Sbjct: 146 YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLI 189
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 36.4 bits (85), Expect = 0.006
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
+ K L G SG GK+TLLN ++ L G I
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLPELDLRTGEI 66
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 36.9 bits (86), Expect = 0.006
Identities = 39/178 (21%), Positives = 67/178 (37%), Gaps = 24/178 (13%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIV------GRNTLDAGTIKLSFRQISDIGYMPQELALHG 97
N ++ + GP+G GK+T+L+ I ++ F D + L G
Sbjct: 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGG 86
Query: 98 ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL- 156
+ R G +D + E + L P V LSGG+ S +++L
Sbjct: 87 KK--YRVERSRGLDYDQFTRIVLLPQGEFDRFLARP-----VSTLSGGETFLASLSLALA 139
Query: 157 ----LHNPK-----LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
L N L +DE LDP + + L+ + + + + +H +EE K
Sbjct: 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISH-VEELK 196
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 36.4 bits (84), Expect = 0.008
Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 50/132 (37%)
Query: 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSI 101
V E ++ G++GP+G GKTT + + G+ + + Y PQ + L
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPV---YKPQYIDL------ 72
Query: 102 RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPK 161
SGG+ +R++ A +LL N
Sbjct: 73 -----------------------------------------SGGELQRVAIAAALLRNAT 91
Query: 162 LLILDEPTVGLD 173
+ DEP+ LD
Sbjct: 92 FYLFDEPSAYLD 103
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 34.1 bits (79), Expect = 0.010
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 136 KKIVGALSGGQQRRISFAVSLL-------------HNPKLLILDEPTVGLDP 174
+ G LSGG+ +++ ++L P+L+ LDE LD
Sbjct: 17 SRDSGTLSGGE-KQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDE 67
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 36.1 bits (84), Expect = 0.011
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPI----LSQIIWDRLKEMALNGKTIIITTHY 200
+ I+ + L++LDE G DP+ L+ I L+E+ G +I TTHY
Sbjct: 94 SHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAI---LEELLERGALVIATTHY 150
Query: 201 IEEAKGAHN 209
E A+
Sbjct: 151 GELKAYAYK 159
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 36.2 bits (84), Expect = 0.012
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 34/186 (18%)
Query: 40 LNVP-ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG---------TIKLSFRQISDIGYM 89
L VP E ++ GL+GP+G GK+T L + G+ + G I FR Y
Sbjct: 20 LPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYF 79
Query: 90 PQELALHGELSIRETFRYY--------GYMFDMTDDQIETRSKEIL-KLLELPPA-KKIV 139
L G++ + +Y G + ++ + E + L LEL + +
Sbjct: 80 --TKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI 137
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK------EMALNGKT 193
LSGG+ +R++ A +L + DEP+ LD I RL E+A +
Sbjct: 138 DQLSGGELQRVAIAAALARDADFYFFDEPSSYLD------IKQRLNAARLIRELAEDDNY 191
Query: 194 IIITTH 199
+++ H
Sbjct: 192 VLVVEH 197
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 36.5 bits (85), Expect = 0.012
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP----ILSQIIWDRLKEMALNGKTIIIT 197
LS GQ++R++ ++L +L+LDE DP Q++ L+EM GKTI
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEM---GKTIFAI 506
Query: 198 TH---YIEEAKGAHNIGLMRDDQ 217
+H Y A + MR+ Q
Sbjct: 507 SHDDHYFI---HADRLLEMRNGQ 526
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 36.4 bits (84), Expect = 0.016
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 139 VGALSGGQQRRISFAVS------LLHNPKLLILDEPTVGLDP----ILSQIIWDRLKEMA 188
+ +LSGG++ ++FA+ L ++ LLI+DEPT LD L II LK+ +
Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSS 858
Query: 189 LNGKTIIITTH 199
+ I+I+ H
Sbjct: 859 DIPQVIMISHH 869
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 35.4 bits (82), Expect = 0.017
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 142 LSGGQQRRIS----FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGG++ + FA+ + +LDE LDP + + D +KEMA + I+
Sbjct: 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI 154
Query: 198 TH 199
T
Sbjct: 155 TL 156
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 35.5 bits (82), Expect = 0.021
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+ + ILDEP L P + L+++A +G III TH
Sbjct: 144 FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 35.3 bits (82), Expect = 0.029
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
KI LLG SG GK+TL+N ++ G I
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEI 195
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 35.4 bits (82), Expect = 0.040
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 20/85 (23%)
Query: 142 LSGGQQRRISFAVSLLH---NPKLLILDEPTVGL--DPI--LSQIIWDRLKEMALNGKTI 194
LSGG+ +RI A L L ILDEPT GL D I L +++ RL + G T+
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVL-QRLVD---KGNTV 885
Query: 195 IITTHYIEEAKGAHNIGLMRDDQYI 219
++ IE HN+ +++ YI
Sbjct: 886 VV----IE-----HNLDVIKTADYI 901
Score = 31.1 bits (71), Expect = 0.66
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 24/120 (20%)
Query: 98 ELSIRETFRYY-GYMFDMTDDQI-ETRSKEILKLLE---------LPPAKKIVGALSGGQ 146
ELSIRE ++ + +I E KEI + L L ++ G LSGG+
Sbjct: 435 ELSIREAHEFFNQLTLTPEEKKIAEEVLKEIRERLGFLIDVGLDYLSLSRAA-GTLSGGE 493
Query: 147 QRRISFA-------VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+RI A +L+ +LDEP++GL ++ + + LK + G T+I+ H
Sbjct: 494 AQRIRLATQIGSGLTGVLY-----VLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEH 548
Score = 31.1 bits (71), Expect = 0.83
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLN 63
LK + +++P + G SG GK+TL+N
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTLIN 652
Score = 27.7 bits (62), Expect = 8.5
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTL 61
LK +++ +P +K+ + G SG GK++L
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38
>gnl|CDD|237040 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 34.6 bits (80), Expect = 0.046
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 244 VINKVDLVDGRGSIDEVLSRQCTVSVDVDRPAI 276
++ + D RG+I EVL R+ ++DRP +
Sbjct: 59 IVEEPDWQGQRGAIAEVLPRK----TELDRPPV 87
Score = 30.4 bits (69), Expect = 1.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 45 NKIYGLLGPSGCGKTTLLNCIV 66
NKI + GPSG GK++L+N ++
Sbjct: 172 NKITVVAGPSGVGKSSLINRLI 193
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 34.9 bits (81), Expect = 0.046
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 22/86 (25%)
Query: 142 LSGGQQRRISFAVSLL---HNPKLLILDEPTVGLDP-----ILSQIIWDRLKEMALNGKT 193
LSGG+ +R+ A L L ILDEPT GL +L + RL + G T
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVL--HRLVD---KGNT 877
Query: 194 IIITTHYIEEAKGAHNIGLMRDDQYI 219
+I+ IE HN+ +++ +I
Sbjct: 878 VIV----IE-----HNLDVIKTADWI 894
Score = 30.6 bits (70), Expect = 1.2
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 140 GALSGGQQRRISFA-------VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
G LSGG+ +RI A +L+ +LDEP++GL ++ + + LK + G
Sbjct: 480 GTLSGGEAQRIRLATQIGSGLTGVLY-----VLDEPSIGLHQRDNERLIETLKRLRDLGN 534
Query: 193 TIIITTH 199
T+I+ H
Sbjct: 535 TVIVVEH 541
Score = 29.9 bits (68), Expect = 2.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLN 63
LK +++ +P + G SG GK+TL+N
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645
Score = 28.7 bits (65), Expect = 4.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTL 61
LK ++L +P NK+ + G SG GK++L
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 34.5 bits (80), Expect = 0.047
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 142 LSGGQQRRISFAVSLLH---NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITT 198
LSGG+ +RI A L L ILDEPT GL + + + L+ + G T+++
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV-- 227
Query: 199 HYIEEAKGAHNIGLMRDDQYI 219
IE HN+ +++ +I
Sbjct: 228 --IE-----HNLDVIKCADWI 241
Score = 29.1 bits (66), Expect = 2.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLN 63
LK +++++P + + G SG GK++L+N
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLIN 39
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 34.1 bits (79), Expect = 0.071
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTI 76
LLG SG GK+TL+N ++G G +
Sbjct: 200 LLGSSGVGKSTLVNALLGEEVQKTGAV 226
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity.
The Ras superfamily is divided into at least four
families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf
families. This superfamily also includes proteins like
the GTP translation factors, Era-like GTPases, and
G-alpha chain of the heterotrimeric G proteins. Members
of the Ras superfamily regulate a wide variety of
cellular functions: the Ras family regulates gene
expression, the Rho family regulates cytoskeletal
reorganization and gene expression, the Rab and
Sar1/Arf families regulate vesicle trafficking, and the
Ran family regulates nucleocytoplasmic transport and
microtubule organization. The GTP translation factor
family regulates initiation, elongation, termination,
and release in translation, and the Era-like GTPase
family regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 33.2 bits (76), Expect = 0.077
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
++G G GK++LLN ++G + +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDV 28
>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal.
Miro2 subfamily. Miro (mitochondrial Rho) proteins have
tandem GTP-binding domains separated by a linker region
containing putative calcium-binding EF hand motifs.
Genes encoding Miro-like proteins were found in several
eukaryotic organisms. This CD represents the putative
GTPase domain in the C terminus of Miro proteins. These
atypical Rho GTPases have roles in mitochondrial
homeostasis and apoptosis. Most Rho proteins contain a
lipid modification site at the C-terminus; however,
Miro is one of few Rho subfamilies that lack this
feature.
Length = 180
Score = 33.4 bits (77), Expect = 0.078
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 51 LGPSGCGKTTLLNCIVGRN 69
LG G GK+ LL +GR+
Sbjct: 10 LGAKGSGKSALLQAFLGRS 28
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 33.5 bits (78), Expect = 0.12
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS 84
GP G GKTTL I AG F +S
Sbjct: 43 GPPGTGKTTLARII-------AGATDAPFEALS 68
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 32.6 bits (74), Expect = 0.18
Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 27/223 (12%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VLK + + + G+ G +G GK++L + +D K+ I DI +P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSL--SLAFFRMVDIFDGKIVIDGI-DISKLPLH- 91
Query: 94 ALHGELSI--RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG------ 145
L LSI ++ + G + D + + + + LE+ K +V +L GG
Sbjct: 92 TLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT 151
Query: 146 ---------QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
Q++ A + + +LI+DE T +D + ++ I ++ A +T++
Sbjct: 152 EGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID-MATENILQKVVMTAFADRTVVT 210
Query: 197 TTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239
H + A + ++ G LV D E+L+ A ED +
Sbjct: 211 IAHRVSTILDADLVLVLSR----GILVECDTPENLL-AQEDGV 248
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 32.6 bits (75), Expect = 0.20
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 7/35 (20%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS 84
L GP G GKTTL I AGT +F +S
Sbjct: 53 LWGPPGTGKTTLARLI-------AGTTNAAFEALS 80
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 32.1 bits (74), Expect = 0.32
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD 85
K+ L G SG GK+TLLN + L+ T +IS+
Sbjct: 163 AGKVTVLAGQSGVGKSTLLNALAPD--LELKT-----GEISE 197
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 32.4 bits (74), Expect = 0.34
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 23/98 (23%)
Query: 133 PPAKKI--VGALSGGQQRRISF-AVSLL-----HNP-KLLILDEPTVGLDPILSQIIWDR 183
PP KK+ + LSGG++ S A++LL + P +LDE LD + +
Sbjct: 1056 PPGKKLQSLSLLSGGEK---SLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARL 1112
Query: 184 LKEMALNGKTIIITTHYIEEAKGAHNIGLM-RDDQYIG 220
+KEM+ + I+IT H G M D+ +G
Sbjct: 1113 IKEMSKETQFIVIT----------HRKGTMEAADRLVG 1140
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely
related to pfam00931.
Length = 165
Score = 31.1 bits (71), Expect = 0.37
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 50 LLGPSGCGKTTLLNCIV---GRNTLDAGT---IKLSFRQISDIGYM-PQEL 93
L G +G GKTTLL I + L L R++S G +L
Sbjct: 5 LQGEAGSGKTTLLQKIALLWAQGKLPQDFDFVFFLPCRELSRSGEASLADL 55
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA
and the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial
binding of EF-G as well. The dissociation of EF-G
leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 31.8 bits (73), Expect = 0.37
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 48 YGLLGPSGCGKTTLL 62
L+G SG GKTTL
Sbjct: 2 IALVGHSGSGKTTLA 16
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 31.6 bits (72), Expect = 0.38
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 162 LLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTH 199
+L++DEP L P L + + LK++A N K IIITTH
Sbjct: 277 ILLIDEPEAHLHPTLQKELIRFLKKLAKKNNKQIIITTH 315
>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins
[General function prediction only].
Length = 219
Score = 31.5 bits (71), Expect = 0.38
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 40 LNVPENKIYGLLGPSGCGKTTLLNCIVG 67
L + E KI +LG G GKTTLLN +VG
Sbjct: 1 LFMKEFKI-VVLGDGGVGKTTLLNRLVG 27
>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small
GTPases. Arf (ADP-ribosylation factor)/Arl (Arf-like)
small GTPases. Arf proteins are activators of
phospholipase D isoforms. Unlike Ras proteins they lack
cysteine residues at their C-termini and therefore are
unlikely to be prenylated. Arfs are N-terminally
myristoylated. Members of the Arf family are regulators
of vesicle formation in intracellular traffic that
interact reversibly with membranes of the secretory and
endocytic compartments in a GTP-dependent manner. They
depart from other small GTP-binding proteins by a unique
structural device, interswitch toggle, that implements
front-back communication from N-terminus to the
nucleotide binding site. Arf-like (Arl) proteins are
close relatives of the Arf, but only Arl1 has been shown
to function in membrane traffic like the Arf proteins.
Arl2 has an unrelated function in the folding of native
tubulin, and Arl4 may function in the nucleus. Most
other Arf family proteins are so far relatively poorly
characterized. Thus, despite their significant sequence
homologies, Arf family proteins may regulate unrelated
functions.
Length = 158
Score = 31.0 bits (71), Expect = 0.38
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 33/111 (29%)
Query: 50 LLGPSGCGKTTLLNCI-----------VGRN--TLDAGTIKLSFRQISDIGYMPQELALH 96
+LG G GKTT+L + +G N T++ +K + D+G
Sbjct: 4 MLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVW---DVG--------- 51
Query: 97 GELSIRETFRYYG-------YMFDMTD-DQIETRSKEILKLLELPPAKKIV 139
G+ IR +++Y ++ D +D ++IE E+ KLL K
Sbjct: 52 GQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAP 102
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 31.8 bits (72), Expect = 0.43
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 142 LSGGQQRRISFA---VSLLHNP-----KLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193
LS G++ I+F L NP K++++D+P D + + +KE N K
Sbjct: 530 LSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQ 589
Query: 194 IIITTH 199
+I+ TH
Sbjct: 590 VIVLTH 595
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases.
Length = 151
Score = 30.6 bits (69), Expect = 0.52
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 50 LLGPSGCGKTTLLNCI 65
L GP G GKTTL I
Sbjct: 24 LYGPPGTGKTTLARAI 39
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 30.3 bits (69), Expect = 0.54
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
L+G SGCGKTTL + G
Sbjct: 6 LIGRSGCGKTTLTQALNG 23
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 31.5 bits (72), Expect = 0.58
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 48 YGLLGPSGCGKTTLLN 63
Y ++GP G GKTTLL
Sbjct: 114 YLVIGPPGSGKTTLLQ 129
>gnl|CDD|227254 COG4917, EutP, Ethanolamine utilization protein [Amino acid
transport and metabolism].
Length = 148
Score = 30.2 bits (68), Expect = 0.59
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
+G GCGKTTL + G +TL T + F DI
Sbjct: 6 FVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFNDKGDI 42
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 30.2 bits (69), Expect = 0.60
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 50 LLGPSGCGKTTLLNCI 65
L GPSG GK+TLL +
Sbjct: 4 LSGPSGVGKSTLLKRL 19
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 31.2 bits (70), Expect = 0.64
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 43 PENKIYGLLGPSGCGKTTLLNCIVGRNT 70
P I ++GP G GK+TL+ +V R T
Sbjct: 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT 94
>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 767
Score = 31.3 bits (71), Expect = 0.66
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL------SFRQISDIGYMPQELALHGEL 99
+ L+GP+G GKTT + R G +L SFR IG + Q L ++G +
Sbjct: 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR----IGALEQ-LRIYGRI 240
>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase,
VirB4 family. Type IV secretion systems are found in
Gram-negative pathogens. They export proteins, DNA, or
complexes in different systems and are related to
plasmid conjugation systems. This model represents
related ATPases that include VirB4 in Agrobacterium
tumefaciens (DNA export) CagE in Helicobacter pylori
(protein export) and plasmid TraB (conjugation).
Length = 785
Score = 31.1 bits (71), Expect = 0.67
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 38 LNLNVPENKIYG---LLGPSGCGKTTLLN 63
N +V + K+ G + GP+G GKTTLLN
Sbjct: 424 FNFHVRDAKVLGHTLIFGPTGSGKTTLLN 452
>gnl|CDD|225572 COG3028, COG3028, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 187
Score = 30.5 bits (69), Expect = 0.72
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 201 IEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALE----DALRHGNVINKVD------ 249
IE A+ I R QYIG+L+ VE + AL+ + +++K++
Sbjct: 67 IELAQRIKSEIARRRQLQYIGKLMRDRDVEPIRAALDKLRNRHNQQVALLHKLEQLRDRL 126
Query: 250 LVDGRGSIDEVLS 262
+ +G G++ E L+
Sbjct: 127 IAEGDGALTEFLN 139
>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH. This
family describes YqeH, a member of a larger family of
GTPases involved in ribosome biogenesis. Like YqlF, it
shows a cyclical permutation relative to GTPases EngA
(in which the GTPase domain is duplicated), Era, and
others. Members of this protein family are found in a
relatively small number of bacterial species, including
Bacillus subtilis but not Escherichia coli [Protein
synthesis, Other].
Length = 360
Score = 30.7 bits (70), Expect = 0.83
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ + SA K G +L + + +Y ++G + GK++L+N ++ +N D I S
Sbjct: 130 IILVSAKKGNGIDELLDKIKKARNKKDVY-VVGVTNVGKSSLINKLLKQNNGDKDVITTS 188
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase.
The Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show
sequence conservation in the region between the Walker
A and B motifs (G1 and G3 box motifs), to the exclusion
of other GTPases. TrmE is ubiquitous in bacteria and is
a widespread mitochondrial protein in eukaryotes, but
is absent from archaea. The yeast member of TrmE
family, MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein
involved in cell division control. Era is characterized
by a distinct derivative of the KH domain (the
pseudo-KH domain) which is located C-terminal to the
GTPase domain. EngA and its orthologs are composed of
two GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct
GTPases, gave rise to this family.
Length = 161
Score = 29.9 bits (68), Expect = 0.86
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
+ G GK++LLN ++G+N I
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSPI 28
>gnl|CDD|226121 COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD
family [DNA replication, recombination, and repair].
Length = 581
Score = 30.8 bits (70), Expect = 0.89
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH---YIEEAKGAHNIGLMRDD 216
P +L+++EP L P L ++WD L + L I+TTH + A L+R
Sbjct: 302 PNILLIEEPEAHLHPQLQAVLWDLLNNLPLG-LQRIVTTHSPHLLSLADLDSICRLVRVS 360
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 30.2 bits (68), Expect = 0.89
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCI 65
+ + GP+G GKTT+L+ I
Sbjct: 18 SKGLTLIYGPNGSGKTTILDAI 39
>gnl|CDD|223132 COG0054, RibH, Riboflavin synthase beta-chain [Coenzyme
metabolism].
Length = 152
Score = 29.9 bits (68), Expect = 0.94
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 224 HHDIVESLVEALEDAL-RHGNVINKVDLVDGRGSID 258
+ DI ++L+E DAL RHG ++ +D+V G+ +
Sbjct: 23 NDDITDALLEGAVDALKRHGADVDNIDVVRVPGAFE 58
>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 273
Score = 30.4 bits (69), Expect = 1.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 47 IYGLLGPSGCGKTTLLNCIV 66
I G+ G SGCGK+T L +
Sbjct: 1 IIGVAGDSGCGKSTFLRRLT 20
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 29.4 bits (67), Expect = 1.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 44 ENKIYGLLGPSGCGKTTLL 62
NKI + GP GKTTLL
Sbjct: 1 NNKIIVITGPRQVGKTTLL 19
>gnl|CDD|224787 COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family
domains [General function prediction only].
Length = 436
Score = 30.4 bits (69), Expect = 1.1
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK--LSFRQI----SDIGYMP 90
L + + L G +G GKT L L+ + + R DIG++P
Sbjct: 240 LLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLP 296
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 30.5 bits (69), Expect = 1.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 45 NKIYGLLGPSGCGKTTLLNCI 65
N ++ + GP+G GKTTLL+ I
Sbjct: 30 NGLFAITGPTGAGKTTLLDAI 50
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP).
Signal recognition particle receptor, beta subunit
(SR-beta). SR-beta and SR-alpha form the heterodimeric
signal recognition particle (SRP or SR) receptor that
binds SRP to regulate protein translocation across the
ER membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC)
to the ER membrane via interaction with the SR, which
is localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been
observed in human colon cancer, suggesting it may play
a role in the development of this type of cancer.
Length = 202
Score = 29.6 bits (67), Expect = 1.3
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 50 LLGPSGCGKTTLLN 63
LLGPS GKT L
Sbjct: 5 LLGPSDSGKTALFT 18
>gnl|CDD|107179 PHA02414, PHA02414, hypothetical protein.
Length = 111
Score = 28.7 bits (64), Expect = 1.3
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 232 VEALEDALRHGNVINKVDLVDGRGSIDEVLSRQCTVSVDVDRPAINEGDY--VWTQLEK 288
VE LED ++ G + +K D + ++ E+ R VS+D D A+N ++ Q+E+
Sbjct: 13 VETLEDKIQEGELTDKGDNKELEVAVAEL--RDIVVSLDKDV-AVNSEKQSHIYYQIER 68
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 30.2 bits (68), Expect = 1.3
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 142 LSGGQQRRISFAVSLL--HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LS G R ++ A LL P LL+LDEP L P L + + ++ A + +I++TH
Sbjct: 271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQ-VIVSTH 329
Query: 200 YIE 202
Sbjct: 330 SPR 332
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme
ethanolamine ammonia lyase. The function of this gene
is unknown, although the presence of an N-terminal
GxxGxGK motif implies a GTP-binding site [Energy
metabolism, Amino acids and amines].
Length = 142
Score = 29.3 bits (66), Expect = 1.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTL 71
+G GCGKTTL + G L
Sbjct: 5 FIGSVGCGKTTLTQALQGEEIL 26
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 29.7 bits (68), Expect = 1.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 49 GLL----GPSGCGKTTLLNCIVGR 68
GLL GPSG GK+TL+ ++ R
Sbjct: 5 GLLIVLSGPSGAGKSTLVKALLER 28
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 29.1 bits (66), Expect = 1.6
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 50 LLGPSGCGKTTLLN 63
+ G GKTTLL
Sbjct: 4 ITGGPSTGKTTLLE 17
>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains
DnaJ-type Zn finger domain [DNA replication,
recombination, and repair].
Length = 715
Score = 30.1 bits (68), Expect = 1.6
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 226 DIVESLVEALEDALRHGNVINKVDLVDGRGSIDE 259
D+ L ALEDA RHG + + LVD GS +E
Sbjct: 399 DVTRDLNFALEDAHRHGQKLPLLVLVD-NGSTEE 431
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The
full-length GTPase protein is required for the complete
activity of the protein of interacting with the 50S
ribosome and binding of both adenine and guanine
nucleotides, with a preference for guanine nucleotide.
Length = 117
Score = 28.4 bits (64), Expect = 1.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 49 GLLGPSGCGKTTLLNCIVGRN 69
L+G GK+TL+N + G
Sbjct: 3 ALVGRPNVGKSTLINALTGAK 23
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily.
Length = 154
Score = 29.1 bits (65), Expect = 1.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 50 LLGPSGCGKTTLLNCI 65
L GPSG GKT+LL +
Sbjct: 29 LTGPSGTGKTSLLREL 44
>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of
preribosomal RNA processing complexes. Bms1 is an
essential, evolutionarily conserved, nucleolar protein.
Its depletion interferes with processing of the 35S
pre-rRNA at sites A0, A1, and A2, and the formation of
40S subunits. Bms1, the putative endonuclease Rc11, and
the essential U3 small nucleolar RNA form a stable
subcomplex that is believed to control an early step in
the formation of the 40S subumit. The C-terminal domain
of Bms1 contains a GTPase-activating protein (GAP) that
functions intramolecularly. It is believed that Rc11
activates Bms1 by acting as a guanine-nucleotide
exchange factor (GEF) to promote GDP/GTP exchange, and
that activated (GTP-bound) Bms1 delivers Rc11 to the
preribosomes.
Length = 231
Score = 29.2 bits (66), Expect = 1.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT 70
HV + P + ++GP G GK+TL+ ++ R T
Sbjct: 26 HVPVVDRTPEEPPPLVVVVVGPPGVGKSTLIRSLIKRYT 64
>gnl|CDD|217750 pfam03828, PAP_assoc, Cid1 family poly A polymerase. This domain
is found in poly(A) polymerases and has been shown to
have polynucleotide adenylyltransferase activity.
Proteins in this family have been located to both the
nucleus and the cytoplasm.
Length = 59
Score = 27.2 bits (61), Expect = 2.1
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 97 GELSIRETFRYYGYMFDMTDDQIETRSKEIL 127
GEL + F YYG FD I R+ L
Sbjct: 3 GEL-LIGFFEYYGREFDYEKVVISIRTGGAL 32
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily. Many of the proteins in this family
are conjugative transfer proteins.
Length = 316
Score = 29.3 bits (66), Expect = 2.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
++GPSG GK+TLL + R
Sbjct: 6 IVGPSGSGKSTLLKLLALRL 25
>gnl|CDD|214887 smart00889, EFG_IV, Elongation factor G, domain IV. Translation
elongation factors are responsible for two main
processes during protein synthesis on the ribosome. EF1A
(or EF-Tu) is responsible for the selection and binding
of the cognate aminoacyl-tRNA to the A-site (acceptor
site) of the ribosome. EF2 (or EF-G) is responsible for
the translocation of the peptidyl-tRNA from the A-site
to the P-site (peptidyl-tRNA site) of the ribosome,
thereby freeing the A-site for the next aminoacyl-tRNA
to bind. Elongation factors are responsible for
achieving accuracy of translation and both EF1A and EF2
are remarkably conserved throughout evolution.
Elongation factor EF2 (EF-G) is a G-protein. It brings
about the translocation of peptidyl-tRNA and mRNA
through a ratchet-like mechanism: the binding of GTP-EF2
to the ribosome causes a counter-clockwise rotation in
the small ribosomal subunit; the hydrolysis of GTP to
GDP by EF2 and the subsequent release of EF2 causes a
clockwise rotation of the small subunit back to the
starting position. This twisting action destabilises
tRNA-ribosome interactions, freeing the tRNA to
translocate along the ribosome upon GTP-hydrolysis by
EF2. EF2 binding also affects the entry and exit channel
openings for the mRNA, widening it when bound to enable
the mRNA to translocate along the ribosome. EF2 has five
domains. This entry represents domain IV found in EF2
(or EF-G) of both prokaryotes and eukaryotes. The
EF2-GTP-ribosome complex undergoes extensive structural
rearrangement for tRNA-mRNA movement to occur. Domain
IV, which extends from the 'body' of the EF2 molecule
much like a lever arm, appears to be essential for the
structural transition to take place.
Length = 120
Score = 28.3 bits (64), Expect = 2.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 211 GLMRDDQYIGRLVHHDIVESLVEALEDALRHG-----NVIN-KVDLVDGRGSIDEVLSR 263
G DD +G ++ + + ++ + +AL G V++ KV L+D GS EV S
Sbjct: 44 GFEFDDTIVGGVIPKEYIPAVEKGFREALEEGPLAGYPVVDVKVTLLD--GSYHEVDSS 100
>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase.
Length = 476
Score = 29.3 bits (65), Expect = 2.4
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 232 VEALEDALRHGNVINKVDLVDGRGSIDEVLSRQCTVSVDVDRPAINE 278
V DAL H ++I+ V L + +G+++ + R C D +N
Sbjct: 201 VAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC------DMYHLNS 241
>gnl|CDD|239390 cd03116, MobB, Molybdenum is an essential trace element in the
form of molybdenum cofactor (Moco) which is associated
with the metabolism of nitrogen, carbon and sulfur by
redox active enzymes. In E. coli, the synthesis of Moco
involves genes from several loci: moa, mob, mod, moe
and mog. The mob locus contains mobA and mobB genes.
MobB catalyzes the attachment of the guanine
dinucleotide to molybdopterin.
Length = 159
Score = 28.8 bits (65), Expect = 2.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 46 KIYGLLGPSGCGKTTLLN----CIVGRNTLDAGTIK 77
K+ G +G SG GKTTLL + R L IK
Sbjct: 2 KVIGFVGYSGSGKTTLLEKLIPALSARG-LRVAVIK 36
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 29.2 bits (66), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 47 IYGLLGPSGCGKTTLLNCIV 66
+ G+ G SGCGKTT L +
Sbjct: 10 LLGVAGDSGCGKTTFLRGLA 29
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 29.2 bits (66), Expect = 2.8
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 7/20 (35%)
Query: 52 GPSGCGKTT----L---LNC 64
GP GCGKT+ L LNC
Sbjct: 44 GPRGCGKTSSARILARSLNC 63
>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 29.1 bits (66), Expect = 2.8
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNL---NVPENKIYGLLGPSGCGKTTL 61
SVAV + YK++ N + L N+ L+GP+G GKT L
Sbjct: 74 SVAVYNHYKRLNNKEDNDDVELSKSNIL------LIGPTGSGKTLL 113
>gnl|CDD|224193 COG1274, PckA, Phosphoenolpyruvate carboxykinase (GTP) [Energy
production and conversion].
Length = 608
Score = 29.3 bits (66), Expect = 3.1
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 38 LNLNVPENKIYGLLG--PSGCGKTTL 61
L + PE K Y PS CGKT L
Sbjct: 254 LGVTNPEGKKYYFTAAFPSACGKTNL 279
>gnl|CDD|238932 cd01972, Nitrogenase_VnfE_like, Nitrogenase_VnfE_like: VnfE subunit
of the VnfEN complex_like. This group in addition to
VnfE contains a subset of the alpha subunit of the
nitrogenase MoFe protein and NifE-like proteins. The
nitrogenase enzyme system catalyzes the ATP-dependent
reduction of dinitrogen to ammonia. NifEN participates
in the synthesis of the iron-molybdenum cofactor
(FeMoco) of MoFe protein of the
molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur
containing precursor of the FeMoco) from NifB is
transferred to NifEN where it is further processed to
FeMoco. VnfEN may similarly be a scaffolding protein
for the iron-vanadium cofactor (FeVco) of the
vanadium-dependent (V)-nitrogenase. NifE and NifN are
essential for the Mo-nitrogenase, VnfE and VnfN are not
essential for the V-nitrogenase. NifE and NifN can
substitute when the vnfEN genes are inactivated.
Length = 426
Score = 28.9 bits (65), Expect = 3.1
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 183 RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV----HHDIVESLVEALEDA 238
L++ AL GK I+ T A G I ++R+ + V HHD ++ +D
Sbjct: 286 ELRK-ALKGKKAIVETG---AAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDSEKDL 341
Query: 239 LRHG 242
L HG
Sbjct: 342 LEHG 345
>gnl|CDD|235256 PRK04210, PRK04210, phosphoenolpyruvate carboxykinase; Provisional.
Length = 601
Score = 29.0 bits (66), Expect = 3.1
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 38 LNLNVPENKIYGLLG--PSGCGKTTL 61
L + PE + PS CGKT L
Sbjct: 247 LGVTSPEGRKTYFAAAFPSACGKTNL 272
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 28.9 bits (65), Expect = 3.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 39 NLNVPENKIYGLLGPSGCGKTTLL 62
NL V + ++ L+GP+G GKTT L
Sbjct: 197 NLIVEQKRVIALVGPTGVGKTTTL 220
>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 484
Score = 29.2 bits (66), Expect = 3.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 8/30 (26%)
Query: 39 NLNVPENK--------IYGLLGPSGCGKTT 60
NL V +++ ++ L+GP+G GKTT
Sbjct: 242 NLPVLDSEDALLDRGGVFALMGPTGVGKTT 271
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor. Sequence
analysis of the products of the GRAS (GAI, RGA, SCR)
gene family indicates that they share a variable
amino-terminus and a highly conserved carboxyl-terminus
that contains five recognisable motifs. Proteins in the
GRAS family are transcription factors that seem to be
involved in development and other processes. Mutation of
the SCARECROW (SCR) gene results in a radial pattern
defect, loss of a ground tissue layer, in the root. The
PAT1 protein is involved in phytochrome A signal
transduction.
Length = 372
Score = 28.8 bits (65), Expect = 3.2
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 102 RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRI 150
E YY +FD + + S+E K+ ++IV ++ R+
Sbjct: 256 VEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVVACEGAERV 304
>gnl|CDD|216619 pfam01637, Arch_ATPase, Archaeal ATPase. This family contain a
conserved P-loop motif that is involved in binding ATP.
This family is almost exclusively found in
archaebacteria and particularly in Methanococcus
jannaschii that encodes sixteen members of this family.
Length = 223
Score = 28.8 bits (65), Expect = 3.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 47 IYGLLGPSGCGKTTLLNCIVGR 68
I + GP CGKT LL +
Sbjct: 22 IIVVYGPRRCGKTALLREFLEE 43
>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24. All proteins in this
family for which functions are known are involved in DNA
damage tolerance (likely cell cycle checkpoints).This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 637
Score = 29.2 bits (65), Expect = 3.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLL 62
LK L +I + GPSGCGK+T +
Sbjct: 100 LKAQVLENAPKRILLITGPSGCGKSTTI 127
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 29.0 bits (65), Expect = 3.3
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT-IIITTHYIE 202
G + IS +S L++ DE G DP + + E L ++ITTHY E
Sbjct: 388 GHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 28.9 bits (66), Expect = 4.0
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 142 LSGGQQRRISFAVSLLHNPK---LLILDEPTVGL 172
LSGG+ +R+ A L L ILDEPT GL
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 864
>gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP;
Provisional.
Length = 158
Score = 28.0 bits (62), Expect = 4.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
K +G G GKTTL N + G TL T + F DI
Sbjct: 2 KRIAFVGAVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDI 42
>gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional.
Length = 420
Score = 28.4 bits (63), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80
+Y L+GP+G GKTT + R + G K++
Sbjct: 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVAL 226
>gnl|CDD|235377 PRK05255, PRK05255, hypothetical protein; Provisional.
Length = 171
Score = 27.9 bits (63), Expect = 4.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 201 IEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGN 243
I EA+ + R QYIG+L+ ++ VE + AL D L++ +
Sbjct: 57 ILEAQRITSHEARRRQLQYIGKLMRNEDVEPIRAAL-DKLKNKH 99
>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether
UreG binds GTP or some other nucleotide. Both enzymes
are involved in nickel binding. HypB can store nickel
and is required for nickel dependent hydrogenase
expression. UreG is required for functional
incorporation of the urease nickel metallocenter. GTP
hydrolysis may required by these proteins for nickel
incorporation into other nickel proteins. This family
of domains also contains P47K, a Pseudomonas
chlororaphis protein needed for nitrile hydratase
expression, and the cobW gene product, which may be
involved in cobalamin biosynthesis in Pseudomonas
denitrificans.
Length = 178
Score = 28.0 bits (63), Expect = 4.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 47 IYGLLGPSGCGKTTLLNCIVGRNTLD 72
+ L G G GKTTLL ++ +N
Sbjct: 2 VTVLTGFLGSGKTTLLEHLLEKNREG 27
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and
host eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 28.0 bits (63), Expect = 4.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 52 GPSGCGKTTLLNCIVG 67
G +G GKTTLLN ++
Sbjct: 32 GGTGSGKTTLLNALLA 47
>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles
in homologous recombination, DNA repair, and the
induction of the SOS response. RecA couples ATP
hydrolysis to DNA strand exchange. While prokaryotes
have a single RecA protein, eukaryotes have multiple
RecA homologs such as Rad51, DMC1 and Rad55/57.
Archaea have the RecA-like homologs radA and radB.
Length = 226
Score = 27.9 bits (63), Expect = 4.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 42 VPENKIYGLLGPSGCGKTTL 61
+P +I + G G GKT L
Sbjct: 16 IPTGRITEIFGEFGSGKTQL 35
>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
Length = 329
Score = 28.3 bits (64), Expect = 4.9
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAG 74
G +G GKT L NCI + LD G
Sbjct: 190 GNTGTGKTFLSNCI-AKELLDRG 211
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 27.9 bits (63), Expect = 5.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 46 KIYGLLGPSGCGKTTLLNCI 65
+ L GPSG GK+TL+ +
Sbjct: 5 LLIVLSGPSGVGKSTLVKAL 24
>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1). This group
represents Arabidoposis protein AIG1 (avrRpt2-induced
gene 1) that appears to be involved in plant resistance
to bacteria. The Arabidopsis disease resistance gene
RPS2 is involved in recognition of bacterial pathogens
carrying the avirulence gene avrRpt2. AIG1 exhibits
RPS2- and avrRpt1-dependent induction early after
infection with Pseudomonas syringae carrying avrRpt2.
This subfamily also includes IAN-4 protein, which has
GTP-binding activity and shares sequence homology with
a novel family of putative GTP-binding proteins: the
immuno-associated nucleotide (IAN) family. The
evolutionary conservation of the IAN family provides a
unique example of a plant pathogen response gene
conserved in animals. The IAN/IMAP subfamily has been
proposed to regulate apoptosis in vertebrates and
angiosperm plants, particularly in relation to cancer,
diabetes, and infections. The human IAN genes were
renamed GIMAP (GTPase of the immunity associated
proteins).
Length = 201
Score = 27.9 bits (63), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
L+G +G GK+ N I+GR
Sbjct: 5 LVGKTGNGKSATGNTILGRK 24
>gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related
to short-chain alcohol dehydrogenases) [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 251
Score = 27.9 bits (62), Expect = 6.0
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 20/88 (22%)
Query: 187 MALNGKTIIIT-----------THYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEAL 235
M L+GK ++T E GA + R + E+L A+
Sbjct: 1 MDLSGKVALVTGASSGIGRAIARALARE--GARVV-------VAARRSEEEAAEALAAAI 51
Query: 236 EDALRHGNVINKVDLVDGRGSIDEVLSR 263
++A D+ D S++ +++
Sbjct: 52 KEAGGGRAAAVAADVSDDEESVEALVAA 79
>gnl|CDD|224292 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 398
Score = 28.1 bits (63), Expect = 6.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLL 62
+ I +LGP GKTTLL
Sbjct: 30 IKKLDLRPFIILILGPRQVGKTTLL 54
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 28.2 bits (63), Expect = 6.1
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
Query: 134 PAKKIVGALSGGQQRRIS----FA--------VSLLHNPKLLILDEPTVGLD 173
P G SGG++ FA + H P+L++LDE G+D
Sbjct: 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVD 1291
>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 28.2 bits (64), Expect = 6.3
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTL 61
SVAV + YK++ H K ++ + ++ I L+GP+G GKT L
Sbjct: 84 SVAVYNHYKRL-RHGDKKDDDVELQKSNIL-LIGPTGSGKTLL 124
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family
for which functions are known are part of an
exonuclease complex with sbcD homologs. This complex is
involved in the initiation of recombination to regulate
the levels of palindromic sequences in DNA. This family
is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 1042
Score = 28.4 bits (63), Expect = 6.4
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 31 NHVVLKGLNLN--VPENKIYGLLGPSGCGKTTLLNCI 65
N KG + I+ + G +G GKTTLL+ I
Sbjct: 10 NFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAI 46
>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small
guanosine triphosphatases (GTPases). Rab GTPases form
the largest family within the Ras superfamily. There
are at least 60 Rab genes in the human genome, and a
number of Rab GTPases are conserved from yeast to
humans. Rab GTPases are small, monomeric proteins that
function as molecular switches to regulate vesicle
trafficking pathways. The different Rab GTPases are
localized to the cytosolic face of specific
intracellular membranes, where they regulate distinct
steps in membrane traffic pathways. In the GTP-bound
form, Rab GTPases recruit specific sets of effector
proteins onto membranes. Through their effectors, Rab
GTPases regulate vesicle formation, actin- and
tubulin-dependent vesicle movement, and membrane
fusion. GTPase activating proteins (GAPs) interact with
GTP-bound Rab and accelerate the hydrolysis of GTP to
GDP. Guanine nucleotide exchange factors (GEFs)
interact with GDP-bound Rabs to promote the formation
of the GTP-bound state. Rabs are further regulated by
guanine nucleotide dissociation inhibitors (GDIs),
which mask C-terminal lipid binding and promote
cytosolic localization. While most unicellular
organisms possess 5-20 Rab members, several have been
found to possess 60 or more Rabs; for many of these Rab
isoforms, homologous proteins are not found in other
organisms. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab
proteins. Since crystal structures often lack
C-terminal residues, the lipid modification site is not
available for annotation in many of the CDs in the
hierarchy, but is included where possible.
Length = 159
Score = 27.4 bits (62), Expect = 6.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 50 LLGPSGCGKTTLLN 63
L+G SG GKT+LL
Sbjct: 5 LIGDSGVGKTSLLL 18
>gnl|CDD|235845 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau;
Validated.
Length = 563
Score = 28.2 bits (63), Expect = 6.5
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 30 GNHVVLKGLNLNVPENKI---YGLLGPSGCGKTT-------LLNCIVG 67
G V++ L ++ NKI Y GP G GKT+ LNC+ G
Sbjct: 20 GQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNG 67
>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1). Arl1 subfamily.
Arl1 (Arf-like 1) localizes to the Golgi complex, where
it is believed to recruit effector proteins to the
trans-Golgi network. Like most members of the Arf
family, Arl1 is myristoylated at its N-terminal helix
and mutation of the myristoylation site disrupts Golgi
targeting. In humans, the Golgi-localized proteins
golgin-97 and golgin-245 have been identified as Arl1
effectors. Golgins are large coiled-coil proteins found
in the Golgi, and these golgins contain a C-terminal
GRIP domain, which is the site of Arl1 binding.
Additional Arl1 effectors include the GARP
(Golgi-associated retrograde protein)/VFT (Vps53)
vesicle-tethering complex and Arfaptin 2. Arl1 is not
required for exocytosis, but appears necessary for
trafficking from the endosomes to the Golgi. In
Drosophila zygotes, mutation of Arl1 is lethal, and in
the host-bloodstream form of Trypanosoma brucei, Arl1 is
essential for viability.
Length = 158
Score = 27.4 bits (61), Expect = 6.8
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 50 LLGPSGCGKTTLLNCI-VGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFR-Y 107
+LG G GKTT+L + VG TI + ++ Q L G+ SIR +R Y
Sbjct: 4 ILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCY 63
Query: 108 YG------YMFDMTD-DQIETRSKEILKLLE 131
Y Y+ D TD D++ E+ +LE
Sbjct: 64 YSNTDAIIYVVDSTDRDRLGISKSELHAMLE 94
>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
Length = 379
Score = 27.8 bits (62), Expect = 6.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77
L ++K+ GLLGP GKT L + +D IK
Sbjct: 150 LARKDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIK 187
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family
are found in a variety of single stranded RNA viruses.
Length = 105
Score = 26.4 bits (59), Expect = 7.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 50 LLGPSGCGKTTLLN 63
L GP GCGK+TL
Sbjct: 3 LYGPPGCGKSTLAK 16
>gnl|CDD|238418 cd00820, PEPCK_HprK, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It
catalyzes the reversible decarboxylation and
phosphorylation of oxaloacetate to yield
phosphoenolpyruvate and carbon dioxide, using a
nucleotide molecule (ATP or GTP) for the phosphoryl
transfer, and has a strict requirement for divalent
metal ions for activity. PEPCK's separate into two
phylogenetic groups based on their nucleotide substrate
specificity (the ATP-, and GTP-dependent
groups).HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the
phosphorylation state of the phosphocarrier protein HPr
and regulates the utilization of carbon sources by
gram-positive bacteria. It catalyzes both the
ATP-dependent phosphorylation of HPr and its
dephosphorylation by phosphorolysis. PEPCK and the
C-terminal catalytic domain of HprK/P are structurally
similar with conserved active site residues suggesting
that these two phosphotransferases have related
functions.
Length = 107
Score = 26.5 bits (58), Expect = 7.2
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 40 LNVPENKIYGLL-GPSGCGKTTL 61
L K+ L+ G SG GKT L
Sbjct: 9 LVDVYGKVGVLITGDSGIGKTEL 31
>gnl|CDD|235097 PRK02999, PRK02999, malate synthase G; Provisional.
Length = 726
Score = 27.8 bits (63), Expect = 7.3
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 9/38 (23%)
Query: 208 HNIGLMRD-------DQYIGRLVHHDIV--ESLVEALE 236
H++GLM D Q+I + H +V E ++E+L+
Sbjct: 625 HDVGLMEDRATLRISSQHIANWLRHGVVTEEQVMESLK 662
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP
kinase. This enzyme transfers a phosphate from ATP to
GMP, yielding ADP and GDP [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 27.1 bits (61), Expect = 7.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 46 KIYGLLGPSGCGKTTLLN 63
+ + GPSG GK+TL+
Sbjct: 1 LLIVISGPSGAGKSTLVK 18
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 27.9 bits (63), Expect = 7.9
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 176 LSQIIWDRLKEMALN--GKTIIITT 198
LSQ +WDRL +A G+ I + T
Sbjct: 346 LSQDVWDRLDRVAEATCGERIRMMT 370
>gnl|CDD|215427 PLN02796, PLN02796, D-glycerate 3-kinase.
Length = 347
Score = 27.8 bits (62), Expect = 8.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 49 GLLGPSGCGKTTLLNCIV 66
G+ P GCGKTTL+ +V
Sbjct: 104 GISAPQGCGKTTLVFALV 121
>gnl|CDD|226570 COG4085, COG4085, Predicted RNA-binding protein, contains TRAM
domain [General function prediction only].
Length = 204
Score = 27.2 bits (60), Expect = 8.3
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 220 GRLVHHDIVESLVEALEDALRHGNVINKVDLVDGRGSIDEVLSRQC--TVSVDVDRPAIN 277
GRL V+ V A ++ G I + L DG G+I V SR T+ ++ P
Sbjct: 48 GRLNEEVTVKGEVTADQN--AIGGGIESLVLNDGTGTITVVASRSTEETLELNEGMPVTV 105
Query: 278 EGDYV 282
EG+ V
Sbjct: 106 EGEIV 110
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de
novo or salvage biosynthesis of thymidine triphosphate
(TTP).
Length = 200
Score = 27.2 bits (61), Expect = 8.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 52 GPSGCGKTTLLNCIVGR 68
G G GKTTL+ + R
Sbjct: 7 GIDGAGKTTLIELLAER 23
>gnl|CDD|217144 pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family
consists of bacterial and archaeal Malate/L-lactate
dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27,
catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate
+ NADH. Malate dehydrogenase, EC:1.1.1.37 and
EC:1.1.1.82, catalyzes the reactions: (S)-malate +
NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+)
<=> oxaloacetate + NADPH respectively.
Length = 334
Score = 27.7 bits (62), Expect = 8.5
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 176 LSQIIWDRLKEMALNGKTI-IITTHYIE-EAKGAHNIGLMRDDQYIGRLVHHDIV 228
L +I L + + + I+ ++ + +G H+ G+ R +Y+ RL I
Sbjct: 7 LKSLIKRVLTQAGVPEEDAKIVADVLVDADLRGVHSHGIGRFPRYVQRLSQGGIN 61
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 26.8 bits (60), Expect = 8.6
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--DIGYMPQELALHGELSIRETFR 106
L GP G GKTTL + A + F +IS ++ + E +RE F
Sbjct: 3 LYGPPGTGKTTLAKAV-------AKELGAPFIEISGSELV---SKYVGESEKRLRELFE 51
>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related
GTPases. These proteins are found in bacteria,
eukaryotes, and archaea. They all exhibit a circular
permutation of the GTPase signature motifs so that the
order of the conserved G box motifs is G4-G5-G1-G2-G3,
with G4 and G5 being permuted from the C-terminal region
of proteins in the Ras superfamily to the N-terminus of
YlqF-related GTPases.
Length = 146
Score = 27.0 bits (60), Expect = 8.7
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI 65
S K+ + + L L + G++G GK++ +N +
Sbjct: 62 FFISATNGQGILKLKAEITKQKLKLKYKKGIRVGVVGLPNVGKSSFINAL 111
>gnl|CDD|223775 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 27.2 bits (61), Expect = 8.9
Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 21/96 (21%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
L+G G GK+T +GR A + L F +D QE+ +SI E F G
Sbjct: 7 LIGFMGAGKST-----IGR--ALAKALNLPFID-TD-----QEIEKRTGMSIAEIFEEEG 53
Query: 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG 145
+ R E L EL V A GG
Sbjct: 54 --------EEGFRRLETEVLKELLEEDNAVIATGGG 81
>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain.
Length = 285
Score = 27.3 bits (61), Expect = 9.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTL 61
+++ L + G++G G GKTTL
Sbjct: 8 LIEKLLEMSDNLGVVGIVGMGGVGKTTL 35
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This
Pfam entry includes some of the AAA proteins not
detected by the pfam00004 model.
Length = 135
Score = 26.5 bits (59), Expect = 9.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 50 LLGPSGCGKTTL 61
L+GP G GK+ L
Sbjct: 4 LVGPPGTGKSEL 15
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
nucleotide-binding domain. This family includes the
ATP synthase alpha and beta subunits, the ATP synthase
associated with flagella and the termination factor
Rho.
Length = 213
Score = 27.0 bits (61), Expect = 9.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 49 GLLGPSGCGKTTLL 62
G+ G SG GKT LL
Sbjct: 19 GIFGGSGTGKTVLL 32
>gnl|CDD|218242 pfam04751, DUF615, Protein of unknown function (DUF615). This
family of bacterial proteins has no known function.
Length = 153
Score = 26.7 bits (60), Expect = 9.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 201 IEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGN 243
I EA+ + R QYIG+L+ + +E++ AL D L++ +
Sbjct: 42 IAEARRITKHEARRRQLQYIGKLMREEDIEAIRAAL-DKLKNKS 84
>gnl|CDD|226415 COG3899, COG3899, Predicted ATPase [General function prediction
only].
Length = 849
Score = 27.7 bits (62), Expect = 10.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 50 LLGPSGCGKTTLLNCIVGRNT 70
+ G SG GK+ L+N + T
Sbjct: 29 VAGESGIGKSALVNEVHKPIT 49
>gnl|CDD|226054 COG3523, IcmF, Type VI protein secretion system component VasK
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 1188
Score = 27.8 bits (62), Expect = 10.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 48 YGLLGPSGCGKTTLLN 63
Y ++GP G GKTT L
Sbjct: 128 YMVIGPPGSGKTTALL 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.139 0.402
Gapped
Lambda K H
0.267 0.0844 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,400,988
Number of extensions: 1548092
Number of successful extensions: 3229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2867
Number of HSP's successfully gapped: 714
Length of query: 291
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 195
Effective length of database: 6,679,618
Effective search space: 1302525510
Effective search space used: 1302525510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)