RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6612
(291 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 197 bits (504), Expect = 1e-62
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 20/235 (8%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+ VK K+IG +LKG++ + E +I+GL+GP+G GKTT L I
Sbjct: 15 AVVVKDLR------KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68
Query: 73 AGTIKLSFRQISD--------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
+G + + + + + I Y+P+E + + E R+ + + +IE +
Sbjct: 69 SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE 128
Query: 125 EILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
++ L K V S G R++ A +L+ NP+L ILDEPT GLD + ++ +
Sbjct: 129 RATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 188
Query: 184 LKEMALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
LK+ + G TI++++H + E I L+ + G +V VE L E +
Sbjct: 189 LKQASQEGLTILVSSHNMLEVEFLCDRIALIHN----GTIVETGTVEELKERYKA 239
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 181 bits (463), Expect = 4e-57
Identities = 42/197 (21%), Positives = 89/197 (45%), Gaps = 14/197 (7%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+E++ ++ V+ + + + + + + GP+G GKTTLL I
Sbjct: 10 KLEIRD---LS---VGYDKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62
Query: 73 AGTIKLSFRQISD----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
G I + I+ I ++P+E+ + ++S+ + + ++ + + + + L+
Sbjct: 63 KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALE 120
Query: 129 LLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+E+ KK +G LS G RR+ A +LL N ++ +LD+P V +D + + E+
Sbjct: 121 SVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
Query: 189 LN-GKTIIITTHYIEEA 204
G II + +
Sbjct: 181 KEKGIVIISSREELSYC 197
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 158 bits (402), Expect = 3e-47
Identities = 65/273 (23%), Positives = 119/273 (43%), Gaps = 38/273 (13%)
Query: 6 IKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI 65
+ R +I++ + +LK ++ + + + L G +G GKTTLLN +
Sbjct: 14 VPRGSHMLIQLDQ---IGRMK---QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNIL 67
Query: 66 VGRNTLDAGTIKL----------SFRQI-SDIGYMPQELA--LHGELSIRET-----FRY 107
+GT+ L S + IG++ L + + F+
Sbjct: 68 NAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS 127
Query: 108 YGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166
G D+ D+ + ++LKL+ + A++ +G LS G+++R+ A +L+ P++LILD
Sbjct: 128 IGVYQDIDDEIRN-EAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILD 186
Query: 167 EPTVGLDPILSQIIWDRLKEMALNGK--TIIITTHYIEEA-KGAHNIGLMRDDQYIGRLV 223
EP GLD I + + L ++ + +I TH+IEE I L++D G+ +
Sbjct: 187 EPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKD----GQSI 242
Query: 224 HHDIVESLV--EALEDALRHGNVINKVDLVDGR 254
VE ++ E + NV V + R
Sbjct: 243 QQGAVEDILTSENMSRFF-QKNV--AVQRWNNR 272
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 134 bits (339), Expect = 4e-38
Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 26/257 (10%)
Query: 13 IIEVKHSVAVTSAYK-KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV----- 66
+I++K+ V K L+ +NL V + +LGP+G GKTTLL I
Sbjct: 1 MIQLKN---VGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPY 56
Query: 67 -GRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
G ++ ++ I +P+ + +++ + Y + + D E
Sbjct: 57 SGNIFINGMEVRKIRNYIRYSTNLPEAYEIG--VTVNDIVYLYEELKGLDRDLF----LE 110
Query: 126 ILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
+LK L+L ++ + LS GQ + +++L P+++ LDEP +D +I
Sbjct: 111 MLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY 170
Query: 184 LKEMALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHG 242
+KE GK I+ TH ++ RL V L+E+
Sbjct: 171 IKEY---GKEGILVTHELDMLNLYKEYKAYFLVG---NRLQGPISVSELLESSIVEGERN 224
Query: 243 NVINKVDLVDGRGSIDE 259
+ + +D++D + SI +
Sbjct: 225 DALLVLDIMDKKVSIVK 241
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 131 bits (333), Expect = 3e-37
Identities = 54/217 (24%), Positives = 105/217 (48%), Gaps = 22/217 (10%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+ + V++ + Y+ + + + LN ++ + I +LG +GCGK+TLL+ ++G +
Sbjct: 3 KALSVEN---LGFYYQ--AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP 57
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRET-----FRYYGYMFDMT--DDQIETRSK 124
G I++ IG++PQ + S+ + + D Q+ ++
Sbjct: 58 IQGKIEVYQS----IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQAL 113
Query: 125 EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI-IWDR 183
+ L L L AK+ +LSGGQ++ I A ++ KL++LDEPT LD + +Q +
Sbjct: 114 DYLNLTHL--AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD-LANQDIVLSL 170
Query: 184 LKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQY 218
L ++A + T++ TTH + A+ L+ +
Sbjct: 171 LIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 121 bits (306), Expect = 2e-32
Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 36/220 (16%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-- 84
K N VL ++L++ +I ++G SGCGKTTLL C+ G D+G I LS + I
Sbjct: 12 KSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSK 71
Query: 85 ---------DIGYMPQELAL--HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP 133
+GY+ QE L H L++ Y Q R + +L+L +
Sbjct: 72 NTNLPVRERRLGYLVQEGVLFPH--LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS 129
Query: 134 P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL--- 189
A + LSGGQQ+R + A +L +P+L++LDEP LD L R +++
Sbjct: 130 ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQL------R-RQIREDMI 182
Query: 190 -----NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223
NGK+ + +H EEA A I +M+ GR++
Sbjct: 183 AALRANGKSAVFVSHDREEALQYADRIAVMKQ----GRIL 218
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 123 bits (312), Expect = 4e-32
Identities = 58/277 (20%), Positives = 108/277 (38%), Gaps = 24/277 (8%)
Query: 10 DPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69
+ + + KK VL +++I ++G +G GKTTL+ + G
Sbjct: 343 EDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402
Query: 70 TLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK--EIL 127
D G + PQ++A ++R+ F F Q +++
Sbjct: 403 KPDEGQDIPKLN----VSMKPQKIAPKFPGTVRQLF------FKKIRGQFLNPQFQTDVV 452
Query: 128 KLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
K L + + V LSGG+ +R++ ++L + ++DEP+ LD I ++
Sbjct: 453 KPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 187 MALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGNV 244
L+ KT I H A A + + + H ESL+ L++ NV
Sbjct: 513 FILHNKKTAFIVEHDFIMATYLADKVIVFEGIP--SKNAHARAPESLLTGCNRFLKNLNV 570
Query: 245 INKVDLVDGRGSIDEVLSRQCTVSVDVDRPAINEGDY 281
+ D R I+++ S+ +D+ + G+Y
Sbjct: 571 TFRRDPNSFRPRINKLDSQ-------MDKEQKSSGNY 600
Score = 93.2 bits (232), Expect = 2e-21
Identities = 44/217 (20%), Positives = 80/217 (36%), Gaps = 28/217 (12%)
Query: 5 SIKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNC 64
+I+ I+ H VT Y N L L ++ GL+G +G GK+T L
Sbjct: 69 AIQIINLPTNLEAH---VTHRYS--ANSFKLHRL-PTPRPGQVLGLVGTNGIGKSTALKI 122
Query: 65 IVGRNTLDAGTIKLSFRQISDIGYMP-QELALHGE--------------------LSIRE 103
+ G+ + G I Y EL + +I+
Sbjct: 123 LAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKG 182
Query: 104 TFRYYGYMFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGGQQRRISFAVSLLHNPKL 162
+ G + + ++ K +K+L+L K+ + LSGG+ +R + +S + +
Sbjct: 183 PVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADV 242
Query: 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+ DEP+ LD ++ + K +I H
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 123 bits (310), Expect = 5e-32
Identities = 60/271 (22%), Positives = 107/271 (39%), Gaps = 18/271 (6%)
Query: 2 RKISIKRIDPEIIEVKHSVAVTSAYK-----KIGNHVVLKGLNLNVPENKIYGLLGPSGC 56
R IK + E+ ++ S + + K K L N E +I G+LGP+G
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGI 305
Query: 57 GKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFR-YYGYMFDMT 115
GKTT +VG T D G++ + + Y PQ + + + ++++ +
Sbjct: 306 GKTTFARILVGEITADEGSVTP---EKQILSYKPQRIFPNYDGTVQQYLENASKDALSTS 362
Query: 116 DDQIETRSKEILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
E E+ K L L V LSGG+ +++ A +L L +LD+P+ LD
Sbjct: 363 SWFFE----EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV 418
Query: 175 ILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLV 232
I+ +K + I H + A I + + + + +L
Sbjct: 419 EERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE--PEKAGLATSPVTLK 476
Query: 233 EALEDALRHGNVINKVDLVDGRGSIDEVLSR 263
+ + LR V + D GR ++++ S
Sbjct: 477 TGMNEFLRELEVTFRRDAETGRPRVNKIGSY 507
Score = 98.2 bits (245), Expect = 3e-23
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 25/197 (12%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVP-ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS- 79
V YK G K L P N I G+LG +G GKTT+L + G + G
Sbjct: 5 VIHRYKVNG----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV 60
Query: 80 -----FRQI--SDIGYMPQELALHGELSIRETFRYYGYMFD---------MTDDQIETRS 123
++ +I +EL EL I +Y Y +T +
Sbjct: 61 GKDEVLKRFRGKEIYNYFKEL-YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK 119
Query: 124 KEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
E+ +LL + K LSGG +R+ A SLL + I D+P+ LD +
Sbjct: 120 DEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK 179
Query: 183 RLKEMALNGKTIIITTH 199
++E+ K +I+ H
Sbjct: 180 AIRELL-KNKYVIVVDH 195
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 122 bits (307), Expect = 2e-31
Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 15/197 (7%)
Query: 7 KRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV 66
K + +E + V K G+ L+ + + ++ G++GP+G GKTT + +
Sbjct: 345 KLSERVDVERETLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLA 403
Query: 67 GRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-- 124
G G ++ + Y PQ + E ++ E + ++ +
Sbjct: 404 GVEEPTEGKVEWDLT----VAYKPQYIKAEYEGTVYELLS------KIDSSKLNSNFYKT 453
Query: 125 EILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
E+LK L + + V LSGG+ +R++ A +LL + + +LDEP+ LD +
Sbjct: 454 ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 513
Query: 184 LKEMALN-GKTIIITTH 199
++ + KT ++ H
Sbjct: 514 IRHLMEKNEKTALVVEH 530
Score = 94.3 bits (235), Expect = 6e-22
Identities = 36/192 (18%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
+ G + + V + + G++GP+G GKTT + + G+ + S+ + I
Sbjct: 99 HRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNV--I 156
Query: 87 GYMPQELALHGELSIRE-----TFRYYGYMFD-------------MTDDQIETRSKEILK 128
+ ++ + D + + +E++K
Sbjct: 157 RAFRGNELQNYFERLKNGEIRPVVKPQ--YVDLLPKAVKGKVRELLKKVDEVGKFEEVVK 214
Query: 129 LLEL-PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
LEL + + LSGG+ +R++ A +LL DEP+ LD + ++ +
Sbjct: 215 ELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274
Query: 188 ALNGKTIIITTH 199
A GK +++ H
Sbjct: 275 ANEGKAVLVVEH 286
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 116 bits (292), Expect = 2e-29
Identities = 41/202 (20%), Positives = 85/202 (42%), Gaps = 14/202 (6%)
Query: 2 RKISIKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTL 61
+I + + + ++ K L+ + + ++ G++GP+G GKTT
Sbjct: 269 YEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTF 328
Query: 62 LNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121
+ + G G I+ ++ Y PQ + E ++ E + ++ +
Sbjct: 329 VKMLAGVEEPTEGKIEWDL-TVA---YKPQYIKADYEGTVYELL------SKIDASKLNS 378
Query: 122 RSK--EILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
E+LK L + + V LSGG+ +R++ A +LL + + +LDEP+ LD
Sbjct: 379 NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 438
Query: 179 IIWDRLKEMALN-GKTIIITTH 199
+ ++ + KT ++ H
Sbjct: 439 AVSRAIRHLMEKNEKTALVVEH 460
Score = 87.7 bits (218), Expect = 1e-19
Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 33/211 (15%)
Query: 12 EIIEVKH-SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT 70
++ Y N VL L + V E + G++GP+G GK+T + + G+
Sbjct: 16 PRSHMEQLEEDCVHRYGV--NAFVLYRLPV-VKEGMVVGIVGPNGTGKSTAVKILAGQLI 72
Query: 71 LDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMF-----DMTD--------- 116
+ S+ + + EL + ++ G + D
Sbjct: 73 PNLCGDNDSWDGVIR-AFRGNELQNY-FEKLKN-----GEIRPVVKPQYVDLIPKAVKGK 125
Query: 117 -------DQIETRSKEILKLLELPPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
+ +E++K LEL ++ + LSGG+ +R++ A +LL N DEP
Sbjct: 126 VIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEP 185
Query: 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+ LD ++ ++ GK++++ H
Sbjct: 186 SSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 112 bits (282), Expect = 5e-29
Identities = 54/201 (26%), Positives = 101/201 (50%), Gaps = 14/201 (6%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
IE V Y G ++G++ + E ++ GLLGPSG GKTT+L I G
Sbjct: 14 TIEFVG---VEKIYP--GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68
Query: 73 AGTIKLSFRQIS-------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
G + + ++++ ++G + Q AL +++ + + + D+++ R +E
Sbjct: 69 KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRE 128
Query: 126 ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+L+ + L A + LSGGQQ+R++ A +L P++L+ DEP +D + + + +
Sbjct: 129 LLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV 188
Query: 185 KEMALN-GKTIIITTHYIEEA 204
+++ G T + TH EEA
Sbjct: 189 RQVHDEMGVTSVFVTHDQEEA 209
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 108 bits (272), Expect = 3e-28
Identities = 66/255 (25%), Positives = 101/255 (39%), Gaps = 49/255 (19%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
I++V+ + Y LKG+N+N+ ++ +LG +G GK+TL G
Sbjct: 7 ILKVEE---LNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 73 AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ-------------- 118
+G I + I I + G +F D+Q
Sbjct: 62 SGRILFDNKPIDY-----------SRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGA 110
Query: 119 ---------IETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
I R LK + K LS GQ++R++ A L+ PK+LILDEP
Sbjct: 111 VNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP 170
Query: 169 TVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEE-AKGAHNIGLMRDDQYIGRLVHHD 226
T GLDP+ I L EM G TIII TH I+ N+ +M++ GR++
Sbjct: 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKE----GRVILQG 226
Query: 227 IVESL---VEALEDA 238
+ + E +
Sbjct: 227 NPKEVFAEKEVIRKV 241
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 105 bits (264), Expect = 4e-27
Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 51/254 (20%)
Query: 14 IEVKHSVAVTSAYKK--IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
IEV + V+ + + L+ ++L + E + + G +G GK+TLL + G
Sbjct: 3 IEVVN---VSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI------------ 119
+G + ++ IR G F +DQ
Sbjct: 60 TSGDVL--------YDGERKKGY-----EIRRNI---GIAFQYPEDQFFAERVFDEVAFA 103
Query: 120 ----------ETRSKEILKLLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166
K+ ++ + L ++ LSGG++RR++ A ++H P +LILD
Sbjct: 104 VKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD 163
Query: 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE-AKGAHNIGLMRDDQYIGRLVHH 225
EP VGLD + +++ GKT+I+ +H IE + ++ G+ V
Sbjct: 164 EPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEK----GKKVFD 219
Query: 226 DIVESLVEALEDAL 239
+E +
Sbjct: 220 GTRMEFLEKYDPRF 233
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 104 bits (262), Expect = 7e-27
Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 28/213 (13%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD--- 85
+ L L+ V +I L+GP+G GK+TLL + G + G+I+ + + +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSA 68
Query: 86 ------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
Y+ Q+ + + + D T ++ L L + +
Sbjct: 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQH--DKTRTELLNDVAGALALDDK--LGRST 124
Query: 140 GALSGGQQRRISFAVSLL-------HNPKLLILDEPTVGLDPILSQI-IWDRLKEMALNG 191
LSGG+ +R+ A +L +LL+LDEP LD + Q + L ++ G
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD-VAQQSALDKILSALSQQG 183
Query: 192 KTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLV 223
I++++H + + AH L++ G+++
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLLKG----GKML 212
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 104 bits (263), Expect = 2e-26
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 23/203 (11%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IE++ ++ +K N + L+L V + + +LGP+G GKT L I G + D
Sbjct: 1 MIEIES---LS---RKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD 53
Query: 73 AGTIKLSFRQIS-------DIGYMPQELAL--HGELSIRETFRYYGYMFDMTDDQIETRS 123
+G I L + ++ DI ++ Q +L H +++++ + M + R
Sbjct: 54 SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPH--MNVKKNL---EFGMRMKKIKDPKRV 108
Query: 124 KEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
+ + L++ + LSGG+Q+R++ A +L+ NPK+L+LDEP LDP + +
Sbjct: 109 LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 183 RLKEMALN-GKTIIITTHYIEEA 204
L + T++ TH EA
Sbjct: 169 MLSVLHKKNKLTVLHITHDQTEA 191
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 102 bits (257), Expect = 2e-26
Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 14/187 (7%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-- 84
K++GN + ++ + LLGP+G GK+ L I G D G ++L+ I+
Sbjct: 9 KRLGNFRL--NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL 65
Query: 85 -----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKI 138
IG++PQ+ AL LS+ YG + ++ + + R +E+ + L + +
Sbjct: 66 PPERRGIGFVPQDYALFPHLSVYRNIA-YG-LRNVERVERDRRVREMAEKLGIAHLLDRK 123
Query: 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIIT 197
LSGG+++R++ A +L+ P+LL+LDEP +D ++ + L+ + I+
Sbjct: 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183
Query: 198 THYIEEA 204
TH + EA
Sbjct: 184 THDLIEA 190
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 103 bits (259), Expect = 5e-25
Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 22/204 (10%)
Query: 1 MRKISIKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTT 60
+ I + + + + G ++L L + + YG+ GP+GCGK+T
Sbjct: 417 VDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKST 476
Query: 61 LLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL-ALHGELSIRETFRYYGYMFDMTDDQI 119
L+ I T + Y+ ++ H + S+ + +
Sbjct: 477 LMRAIANGQVDGFPTQE-----ECRTVYVEHDIDGTHSDTSVLDFVF-------ESGVGT 524
Query: 120 ETRSKEILKLLELPPA--KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
+ K+ L + ALSGG + +++ A ++L N +L+LDEPT LD
Sbjct: 525 KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD--TV 582
Query: 178 QIIW--DRLKEMALNGKTIIITTH 199
+ W + L G T I +H
Sbjct: 583 NVAWLVNYLNTC---GITSITISH 603
Score = 63.1 bits (153), Expect = 2e-11
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 2/160 (1%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92
+ +N + ++GP+G GK+TL+N + G +G + I Y+ Q
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--CRIAYIKQH 744
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISF 152
H E + +T Y T + ET + ++ E G RRI+
Sbjct: 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAG 804
Query: 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
S + + + I + N
Sbjct: 805 IHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAW 844
Score = 62.4 bits (151), Expect = 4e-11
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Query: 85 DIGYMPQ-ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP---AKKIVG 140
D ++P+ EL + E +E +L L P + +
Sbjct: 841 DNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIR 900
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN--GKTIIITT 198
LSGGQ+ ++ A P L++LDEPT LD + L AL +II T
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD--RDSLGA--L-SKALKEFEGGVIIIT 955
Query: 199 H 199
H
Sbjct: 956 H 956
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 100 bits (252), Expect = 6e-24
Identities = 69/214 (32%), Positives = 100/214 (46%), Gaps = 33/214 (15%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD----- 85
+LKGLNL V + L+G SGCGK+T + + G + + + I
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 86 ----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE------ILKLLELPPA 135
IG + QE L +I E RY G D+T D+IE KE I+KL P
Sbjct: 462 LREIIGVVSQEPVLFAT-TIAENIRY-GRE-DVTMDEIEKAVKEANAYDFIMKL----PH 514
Query: 136 KK--IVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+ +VG LSGGQ++RI+ A +L+ NPK+L+LDE T LD ++ L + A
Sbjct: 515 QFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AR 573
Query: 190 NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
G+T I+ H + + A I G +V
Sbjct: 574 EGRTTIVIAHRLSTVRNADVIAGFDG----GVIV 603
Score = 94.3 bits (235), Expect = 9e-22
Identities = 63/231 (27%), Positives = 109/231 (47%), Gaps = 34/231 (14%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
++ V Y + VL+GL+L V + + L+G SGCGK+T++ + A
Sbjct: 1031 VQFSG---VVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 74 GTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
G++ L ++I +G + QE L + SI E Y ++ ++I +K
Sbjct: 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 125 E------ILKLLELPPAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
E I L P K VG LSGGQ++RI+ A +L+ P +L+LDE T L
Sbjct: 1147 EANIHQFIDSL----PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202
Query: 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
D +++ + L + A G+T I+ H + + A I ++++ G++
Sbjct: 1203 DTESEKVVQEAL-DKAREGRTCIVIAHRLSTIQNADLIVVIQN----GKVK 1248
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 96.4 bits (241), Expect = 7e-24
Identities = 48/191 (25%), Positives = 93/191 (48%), Gaps = 28/191 (14%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L G++++V + + ++GP+G GK+TL+N I G D G + + I+ P EL
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT--NKEPAELY 80
Query: 95 LHG------------ELSIRE------TFRYYGYMFDM-------TDDQIETRSKEILKL 129
+G E+++ E + + ++++ ++ +IL+
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 130 LELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
L+L + G LSGGQ + + +L+ NPK++++DEP G+ P L+ I++ + E+
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 189 LNGKTIIITTH 199
G T +I H
Sbjct: 201 AKGITFLIIEH 211
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 95.2 bits (238), Expect = 1e-23
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 36/207 (17%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI------- 65
++ +H V AY + +L+ ++ N I GPSG GK+T+ + +
Sbjct: 1 MLSARH---VDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT 55
Query: 66 VGRNTLDAGTIK----LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121
G T+D I ++R IG++ Q+ A+ +IRE Y G D TD+ +
Sbjct: 56 AGEITIDGQPIDNISLENWRS--QIGFVSQDSAIMAG-TIRENLTY-GLEGDYTDEDLWQ 111
Query: 122 RSKE------ILKLLELPPAK--KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPT 169
+ + P + VG +SGGQ++R++ A + L NPK+L+LDE T
Sbjct: 112 VLDLAFARSFVENM----PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEAT 167
Query: 170 VGLDPILSQIIWDRLKEMALNGKTIII 196
LD ++ L + T++I
Sbjct: 168 ASLDSESESMVQKALDSLMKGRTTLVI 194
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 93.7 bits (234), Expect = 3e-23
Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 42/235 (17%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
EI+ ++ K I + +LKG++L+V + + ++G SG GK+TLL I+G L
Sbjct: 3 EILRAEN------IKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLY-ILG--LL 53
Query: 72 D---AGTIKLSFRQISD-------------IGYMPQELALHGELSIRET----FRYYGYM 111
D G + L +++ +G++ Q L EL+ E G
Sbjct: 54 DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG-- 111
Query: 112 FDMTDDQIETRSKEILKLLELPPAKKIV---GALSGGQQRRISFAVSLLHNPKLLILDEP 168
+ + R + +L L L K+ LSGG+Q+R++ A +L + P LL DEP
Sbjct: 112 --KPKKEAKERGEYLLSELGL--GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEP 167
Query: 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
T LD ++ + D ++ G +I++ TH E A+ H M+D G++V
Sbjct: 168 TGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKD----GKVV 218
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 93.7 bits (234), Expect = 6e-23
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI-------V 66
I ++ + YK + V+L +NL++ + ++ G++G SG GK+TL I
Sbjct: 8 ITFRN---IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 67 GRNTLDAGTIKL----SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122
G+ +D + L R+ +G + Q+ L SI + M+ +++
Sbjct: 64 GQVLIDGHDLALADPNWLRR--QVGVVLQDNVLLNR-SIIDNISLA--NPGMSVEKVIYA 118
Query: 123 SKE------ILKLLELPPAK--KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
+K I +L IVG LSGGQ++RI+ A +L++NPK+LI DE T
Sbjct: 119 AKLAGAHDFISEL----REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATS 174
Query: 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
LD +I + ++ G+T+II H + K A I +M G++V
Sbjct: 175 ALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEK----GKIV 222
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 93.0 bits (232), Expect = 1e-22
Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 31/207 (14%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
++I+V K G+ VLKG+N+++ E ++ ++GPSG GK+T L C+
Sbjct: 23 QMIDVHQ------LKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF 76
Query: 72 DAGTIKLSFRQISD-----------IGYMPQELALHGELSIRE-------TFRYYGYMFD 113
D G I + + +G + Q L +++ R
Sbjct: 77 DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR------K 130
Query: 114 MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
++ E ++ E+L + L A +LSGGQ +R++ A +L PK+++ DEPT L
Sbjct: 131 WPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
Query: 173 DPILSQIIWDRLKEMALNGKTIIITTH 199
DP + + +K++A G T+++ TH
Sbjct: 191 DPEMVGEVLSVMKQLANEGMTMVVVTH 217
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 92.2 bits (230), Expect = 2e-22
Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 33/228 (14%)
Query: 13 IIEVKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
++++K+ VT YK + LK +NLN+ E + ++GPSG GK+T+LN I+G L
Sbjct: 1 MVKLKN---VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIG--CL 54
Query: 72 D---AGTIKLSFRQISD-------------IGYMPQELALHGELSIRETFR---YYGYMF 112
D G + + + +D IG++ Q+ L L+ E + Y
Sbjct: 55 DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG 114
Query: 113 DMTDDQIETRSKEILKLLELPPAKKIV----GALSGGQQRRISFAVSLLHNPKLLILDEP 168
M+ ++ R+ E LK+ EL ++ LSGGQQ+R++ A +L +NP +++ D+P
Sbjct: 115 AMSGEERRKRALECLKMAEL--EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 169 TVGLDPILSQIIWDRLKEM-ALNGKTIIITTHYIEEAKGAHNIGLMRD 215
T LD + I LK++ +GKT+++ TH I A+ I ++D
Sbjct: 173 TWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD 220
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 92.6 bits (231), Expect = 2e-22
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 46/238 (19%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI-------VGRNTLDAGTIK-LSFRQ 82
N VL+GL + K+ L+GP+G GK+T+ + G+ LD +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 83 I-SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE------ILKLLELPPA 135
+ + + + QE L G S RE Y G T ++I + E I P
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAY-GLTRTPTMEEITAVAMESGAHDFISGF----PQ 144
Query: 136 K--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP---ILSQIIWDRLKE 186
VG LSGGQ++ ++ A +L+ P+LLILD T LD + Q + E
Sbjct: 145 GYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE 204
Query: 187 MALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV----HHDIVE------SLVEA 234
A +T+++ T + A+ AH+I +++ G + H ++E S+VEA
Sbjct: 205 WA--SRTVLLITQQLSLAERAHHILFLKE----GSVCEQGTHLQLMERGGCYRSMVEA 256
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 92.2 bits (230), Expect = 2e-22
Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 41/213 (19%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL---DAGTI 76
+ V +K+ G H VLKG++L + ++G SG GK+T L CI N L G I
Sbjct: 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCI---NFLEKPSEGAI 63
Query: 77 KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMF-----------------------D 113
++ + I+ + +L + + +R +F
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 123
Query: 114 MTDDQIETRSKEILKLLELP-------PAKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166
++ R+ + L + + P LSGGQQ+R+S A +L P +L+ D
Sbjct: 124 LSKHDARERALKYLAKVGIDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFD 178
Query: 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
EPT LDP L + ++++A GKT+++ TH
Sbjct: 179 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 91.9 bits (229), Expect = 4e-22
Identities = 62/205 (30%), Positives = 92/205 (44%), Gaps = 34/205 (16%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV------G 67
IE V +Y K NH LK +N +P L+G +G GK+T+ + G
Sbjct: 18 IEFSD---VNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG 74
Query: 68 RNTLDAGTIK----LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123
+ + S R I IG +PQ+ L E +I+ Y G D TD+++ +
Sbjct: 75 DIKIGGKNVNKYNRNSIRSI--IGIVPQDTILFNE-TIKYNILY-G-KLDATDEEVIKAT 129
Query: 124 KE------ILKLLELPPAK--KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171
K I L P K IVG LSGG+++RI+ A LL +PK++I DE T
Sbjct: 130 KSAQLYDFIEAL----PKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSS 185
Query: 172 LDPILSQIIWDRLKEMALNGKTIII 196
LD + ++++ N III
Sbjct: 186 LDSKTEYLFQKAVEDLRKNRTLIII 210
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 90.8 bits (226), Expect = 4e-21
Identities = 62/240 (25%), Positives = 114/240 (47%), Gaps = 27/240 (11%)
Query: 10 DPEIIEVKHSVAVTSAYK-KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68
D +I++ + +T + L ++L+VP +IYG++G SG GK+TL+ C+
Sbjct: 21 DKHMIKLSN---ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 69 NTLDAGTI--------KLSFRQI----SDIGYMPQELALHGELSIRETFRYYGYMFDMTD 116
G++ LS ++ IG + Q L ++ + +
Sbjct: 78 ERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK 137
Query: 117 DQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
D+++ R E+L L+ L LSGGQ++R++ A +L NPK+L+ D+ T LDP
Sbjct: 138 DEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 176 LSQIIWDRLKEMALN---GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231
++ I + LK+ +N G TI++ TH ++ K + ++ + G L+ D V +
Sbjct: 198 TTRSILELLKD--INRRLGLTILLITHEMDVVKRICDCVAVISN----GELIEQDTVSEV 251
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 87.9 bits (219), Expect = 8e-21
Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 26/192 (13%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
+ Y G +KG++L VP +I L+G +G GKTT L+ I G G I + +
Sbjct: 12 LHVYY---GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68
Query: 82 QISDIGYMPQELALHG------------ELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
I+ + G EL++ E Y + +++ +
Sbjct: 69 DIT--NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEG----IKRDLEWI 122
Query: 130 LELPP-----AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
L P K++ G LSGG+Q+ ++ +L+ PKLL++DEP++GL PIL +++ +
Sbjct: 123 FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 185 KEMALNGKTIII 196
+++ G TI++
Sbjct: 183 QKINQEGTTILL 194
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 86.6 bits (215), Expect = 1e-19
Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
I VK+ V+ +KK G V L +N+N+ + +G+LGPSG GKTT + I G +
Sbjct: 4 IIVKN---VSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 74 GTIKLSFRQISDIGYMP------------QELALHGELSIRETFRYYGYMFDMTDDQIET 121
G + R ++ G + Q AL+ L+ E + M+ ++I
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 122 RSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL---- 176
R +E+ K+L++ LSG QQ+R++ A +L+ +P LL+LDEP LD +
Sbjct: 120 RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 177 -SQI--IWDRLKEMALNGKTIIITTHYIEEA 204
+ + + RL G T+++ +H +
Sbjct: 180 RALVKEVQSRL------GVTLLVVSHDPADI 204
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 83.4 bits (207), Expect = 4e-18
Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 40/208 (19%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI-------V 66
I++ H V+ Y +LK +NL++ + + +G SG GK+TL+N I
Sbjct: 340 IDIDH---VSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 67 GRNTLDAGT----IKL-SFRQISDIGYMPQELAL-HGELSIRETFRYYGYMFDMTDDQIE 120
G+ +D G S R + IG + Q+ L +++E G TD+++
Sbjct: 396 GQILID-GHNIKDFLTGSLR--NQIGLVQQDNILFSD--TVKENILL-G-RPTATDEEVV 448
Query: 121 TRSKE------ILKLLELPPAK--KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEP 168
+K I+ L P VG LSGGQ++R+S A L+NP +LILDE
Sbjct: 449 EAAKMANAHDFIMNL----PQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 504
Query: 169 TVGLDPILSQIIWDRLKEMALNGKTIII 196
T LD II + L ++ + T+I+
Sbjct: 505 TSALDLESESIIQEALDVLSKDRTTLIV 532
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 81.1 bits (201), Expect = 2e-17
Identities = 60/216 (27%), Positives = 106/216 (49%), Gaps = 34/216 (15%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI-------VGRNTLDAGTIK-LSFRQ 82
+ + +L++P + L+GPSG GK+T+L+ + G +LD I+ L+
Sbjct: 356 EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVW 415
Query: 83 I-SDIGYMPQELALHGELSIRETFRYYG--YMFDMTDDQIETRSKE------ILKLLELP 133
+ S IG + QE L SI E Y G +T ++I+ ++ I
Sbjct: 416 LRSKIGTVSQEPILFSC-SIAENIAY-GADDPSSVTAEEIQRVAEVANAVAFIRNF---- 469
Query: 134 PAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
P +VG LSGGQ++RI+ A +LL NPK+L+LDE T LD ++ + L +
Sbjct: 470 PQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEAL-DR 528
Query: 188 ALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
++G+T+++ H + K A+ + ++ G++
Sbjct: 529 LMDGRTVLVIAHRLSTIKNANMVAVLDQ----GKIT 560
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 78.8 bits (195), Expect = 3e-17
Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 25/215 (11%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI-------VGRNTLDAGTIK----LSFRQ 82
L+ ++ V + L+GPSG GK+T+L + G +D I S R
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128
Query: 83 ISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET--RSKEIL-KLLELPPA-KKI 138
IG +PQ+ L + +I + RY G +D++E ++ I ++ P +
Sbjct: 129 H--IGVVPQDTVLFND-TIADNIRY-G-RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQ 183
Query: 139 VG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
VG LSGG+++R++ A ++L P +++LDE T LD + I L ++ +T
Sbjct: 184 VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTT 242
Query: 195 IITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
I+ H + A I +++D + R H ++
Sbjct: 243 IVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS 277
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 79.6 bits (197), Expect = 4e-17
Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 18/168 (10%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
+ + + KK GN L +NL + + + LLGPSG GK+TLL I G +G I
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 79 SFRQIS-------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
+ ++ ++G + Q AL+ +++ + + + ++I+ + +E+ K+L
Sbjct: 63 DEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH 122
Query: 132 LP------PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ P LSGGQQ+R++ A +L+ P++L+LDEP LD
Sbjct: 123 IDKLLNRYPW-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 79.9 bits (198), Expect = 5e-17
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 33/182 (18%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
++VK VT Y+ L ++ ++P+ K L+G SG GK+T+ N +D+
Sbjct: 342 VDVKD---VTFTYQG-KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS 397
Query: 74 GTIKLSFRQISD---------IGYMPQELAL-HGELSIRETFRYYGYMFDMTDDQIETRS 123
G+I L + D + Q + L + +I Y + T +QIE +
Sbjct: 398 GSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND--TIANNIA-YAAEGEYTREQIEQAA 454
Query: 124 KE------ILKLLELPPAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVG 171
++ I + P ++G LSGGQ++R++ A +LL + +LILDE T
Sbjct: 455 RQAHAMEFIENM----PQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510
Query: 172 LD 173
LD
Sbjct: 511 LD 512
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 77.6 bits (192), Expect = 3e-16
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 35/183 (19%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+E ++ VT Y L+ +NL +P K L+G SG GK+T+ + I +D
Sbjct: 342 LEFRN---VTFTYPG-REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 74 GTIKL-----------SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122
G I + S R + + + Q + L + ++ Y + + +QIE
Sbjct: 398 GHILMDGHDLREYTLASLR--NQVALVSQNVHLFND-TVANNIA-YARTEEYSREQIEEA 453
Query: 123 SKE------ILKLLELPPAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTV 170
++ I K+ I+G LSGGQ++RI+ A +LL + +LILDE T
Sbjct: 454 ARMAYAMDFINKM----DNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS 509
Query: 171 GLD 173
LD
Sbjct: 510 ALD 512
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 73.7 bits (182), Expect = 9e-16
Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 32/218 (14%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VLK +N + ++ + G +G GKT+LL I+G G IK S R I + Q
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFS 78
Query: 94 ALHGELSIRE--TFRYYGYMFDMTDDQIETRSKEILKL------LELPPA--KKIVG--- 140
+ +I+E F G +D E R + ++K + ++G
Sbjct: 79 WIMPG-TIKENIIF---GVSYD------EYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 141 -ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LSGGQ+ RIS A ++ + L +LD P LD + + I++ + KT I+ T
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 200 YIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
+E K A I ++ + G + L D
Sbjct: 189 KMEHLKKADKILILHE----GSSYFYGTFSELQNLQPD 222
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 74.6 bits (184), Expect = 2e-15
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
V + + K+ GN + LNL + + + LLGPSGCGKTT L I G G I
Sbjct: 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70
Query: 79 SFRQISDIGYMP---------QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
R ++ + P Q A+ +++ E + + D+I+ R + +L
Sbjct: 71 GDRDVTYLP--PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAEL 128
Query: 130 LELP------PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
L++ PA LSGGQ++R++ A +++ P +L++DEP LD
Sbjct: 129 LQIEELLNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 74.6 bits (184), Expect = 2e-15
Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 20/169 (11%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
S+ V + K G + G++ V + + LLGPSGCGKTT L + G +G I
Sbjct: 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62
Query: 79 SFRQIS-------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
++ ++G + Q AL+ +++ E + ++ D++E R EI + L
Sbjct: 63 DDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL 122
Query: 132 L-------PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ P LSGGQQ+R++ A +L+ PK+L+ DEP LD
Sbjct: 123 IDNLLDRKP------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 73.4 bits (181), Expect = 5e-15
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 26/175 (14%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
V + +K G ++ ++L V + + LLGPSGCGKTT L I G G I +
Sbjct: 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62
Query: 79 SFRQISDIGYMP-------------QELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
+ ++D Q AL+ +++ + + + + +I+ R +E
Sbjct: 63 GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE 122
Query: 126 ILKLLEL-------PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ +LL L P LSGGQ++R++ +++ P++ ++DEP LD
Sbjct: 123 VAELLGLTELLNRKP------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 72.0 bits (177), Expect = 9e-15
Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 29/216 (13%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VLK +N + ++ + G +G GKT+LL I+G G IK S R I + Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQNS 108
Query: 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL------LELPPA--KKIVG----A 141
+ +I+E G +D E R + ++K + ++G
Sbjct: 109 WIMPG-TIKENI--IGVSYD------EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 159
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201
LSGGQ+ RIS A ++ + L +LD P LD + + I++ + KT I+ T +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 202 EEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
E K A I ++ + G + L D
Sbjct: 220 EHLKKADKILILHE----GSSYFYGTFSELQNLRPD 251
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 69.5 bits (171), Expect = 3e-14
Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 34/216 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
L G+ ++PE + ++G GCGK++LL+ ++ G + + + Y+PQ+
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK----GSVAYVPQQA 75
Query: 94 ALHGELSIRE--TFRYYGYMFDMTDDQIETRSKEILKL------LELPPA--KKIVG--- 140
+ + S+RE F G + E + +++ LE+ P+ + +G
Sbjct: 76 WIQND-SLRENILF---GCQLE------EPYYRSVIQACALLPDLEILPSGDRTEIGEKG 125
Query: 141 -ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR--LKEMALNGKTIIIT 197
LSGGQ++R+S A ++ N + + D+P +D + + I++ + L KT I+
Sbjct: 126 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILV 185
Query: 198 THYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
TH + I +M G++ + L+
Sbjct: 186 THSMSYLPQVDVIIVMSG----GKISEMGSYQELLA 217
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 67.8 bits (166), Expect = 4e-13
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 31/190 (16%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY----- 88
+L+ ++ ++ + GLLG +G GK+TLL+ + R G I++ I
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQWRK 94
Query: 89 ----MPQELAL-HGELSIRET---FRYYGYMFDMTDDQI-----ETRSKEILKLLELPPA 135
+PQ++ + G + R+ + +D +I E + +++
Sbjct: 95 AFGVIPQKVFIFSG--TFRKNLDPNAAH------SDQEIWKVADEVGLRSVIEQFPGKLD 146
Query: 136 KKIV---GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
+V LS G ++ + A S+L K+L+LDEP+ LDP+ QII LK+ A
Sbjct: 147 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ-AFADC 205
Query: 193 TIIITTHYIE 202
T+I+ IE
Sbjct: 206 TVILCEARIE 215
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 60.6 bits (148), Expect = 1e-10
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 53/187 (28%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IE K+ V +Y K VLK + ++ + L+GP+G GKTT++N ++ +D
Sbjct: 355 IEFKN---VWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409
Query: 74 GTIKLSFRQISDI---------GYMPQELAL-HGELSIRETFRYYGYMFDMTDDQIETRS 123
G I + I I G + Q+ L +++E +Y G TD++I+
Sbjct: 410 GQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST--TVKENLKY-GNP-GATDEEIKE-- 463
Query: 124 KEILKLLELPPAKKIVGA---------------------LSGGQQRRISFAVSLLHNPKL 162
A K+ + LS GQ++ ++ + L NPK+
Sbjct: 464 -----------AAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512
Query: 163 LILDEPT 169
LILDE T
Sbjct: 513 LILDEAT 519
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 58.3 bits (142), Expect = 7e-10
Identities = 71/274 (25%), Positives = 119/274 (43%), Gaps = 62/274 (22%)
Query: 3 KISIKRI------DPEIIEVKHSVAVTSAYKKIG-NHV----------VLKGLNLNVPEN 45
S KR+ P I E +++A+ + + +V VL G+N +V
Sbjct: 310 SASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPG 369
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---------IGYMPQELAL- 95
+ +LG +G GK+TL+N I + G +++ + I +PQE L
Sbjct: 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF 429
Query: 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA-------------- 141
G +I+E ++ G D TDD EI++ ++ + +
Sbjct: 430 SG--TIKENLKW-GRE-DATDD-------EIVEAAKIAQIHDFIISLPEGYDSRVERGGR 478
Query: 142 -LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
SGGQ++R+S A +L+ PK+LILD+ T +DPI + I D LK G T I T
Sbjct: 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTTFIITQK 537
Query: 201 IEEAKGAHNIGLMRDDQYIGRLV----HHDIVES 230
I A A I ++ + G++ H +++E
Sbjct: 538 IPTALLADKILVL-HE---GKVAGFGTHKELLEH 567
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 57.9 bits (141), Expect = 9e-10
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 24/166 (14%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
SV + + K G VV K +NL++ E + +GPSGCGK+TLL I G T+ +G + +
Sbjct: 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62
Query: 79 SFRQISDIGYMP---------QELALHGELSIRETFRYYGYMFDMTDDQIETRSKE---I 126
++++D P Q AL+ LS+ E + + + I R + +
Sbjct: 63 GEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 120
Query: 127 LKLLEL----PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
L+L L P ALSGGQ++R++ +L+ P + +LDEP
Sbjct: 121 LQLAHLLDRKP------KALSGGQRQRVAIGRTLVAEPSVFLLDEP 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 3e-09
Identities = 53/319 (16%), Positives = 89/319 (27%), Gaps = 141/319 (44%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG---------RNTLDAGTIKLSFRQI 83
V K L P L G +G + + + + A I + F
Sbjct: 251 VTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA--ITVLFF-- 305
Query: 84 SDIGYMPQE----LAL----------HGE------LSIRETFRYYGYMFDMTDDQIETRS 123
IG E +L + E LSI ++T +Q++
Sbjct: 306 --IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS----------NLTQEQVQ--- 350
Query: 124 KEILKL-LELPPAKKIVGAL---------SG---------------------GQ------ 146
+ K LP K++ +L SG Q
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 147 QRRISFAVSLL------HNPKLLILDEPTVGLDPILSQIIWDRLK-EMALNGKTIIITTH 199
+R++ F+ L H+ L L P I D +K ++ N K I I +
Sbjct: 411 ERKLKFSNRFLPVASPFHSH----L------LVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 200 YIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEAL-------EDALR----H------- 241
+ D R++ I E +V+ + E + H
Sbjct: 461 DTFDGS----------DL---RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPG 507
Query: 242 -----GNVINKVDLVDGRG 255
G + ++ DG G
Sbjct: 508 GASGLGVLTHR--NKDGTG 524
Score = 42.3 bits (99), Expect = 2e-04
Identities = 40/268 (14%), Positives = 79/268 (29%), Gaps = 82/268 (30%)
Query: 70 TLDAGTIKLSF----------RQISD--IGYMPQ---ELALHGEL-SIRE-TFRYYGYMF 112
TL G+++ Q+ + +P+ A E + E ++ GY+
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 113 DMTDDQIETRSKEILKLLELPPAKKIVGA-----LSGGQQRRI-SFAVSLLHNPKLLILD 166
+ + + ++L L + L G I + A LL ++
Sbjct: 70 SLVEPSKVGQFDQVLNLC--------LTEFENCYLEGND---IHALAAKLLQENDTTLVK 118
Query: 167 EPTV----------GLDPILSQIIWDRLKEMALNGKTIII--------TTHYIEEAKGAH 208
+ P + L G ++ T Y EE
Sbjct: 119 TKELIKNYITARIMAKRPF-DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE----- 172
Query: 209 NIGLMRD--DQY---IGRLVH--HDIVESLVEALEDALR-HGNVINKVDLVDGRGSI--D 258
+RD Y +G L+ + + L+ DA + +N ++ ++ +
Sbjct: 173 ----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 259 EVLSRQCTVSVDVDRPAINEGDYVWTQL 286
+ L +S P I QL
Sbjct: 229 DYLLS-IPISC----PLI-----GVIQL 246
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 55.4 bits (133), Expect = 5e-09
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 142 LSGGQQRRISFAVSL------LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
LSGG++ + A L LLILDEPT LD + + ++ +I
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 196 ITTHYIEEAKGAHNI 210
+ +H E A ++
Sbjct: 309 LVSHDEELKDAADHV 323
Score = 26.9 bits (59), Expect = 7.9
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCI 65
+ E I ++G +G GK++LL+ I
Sbjct: 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAI 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.1 bits (129), Expect = 2e-08
Identities = 58/337 (17%), Positives = 116/337 (34%), Gaps = 99/337 (29%)
Query: 10 DPEIIE---VKHSVAVTSAYKKIGN--------HVVLKGLNLNVPENKIYGLLGPSGCGK 58
+ + + + +T+ +K++ + H+ L ++ + +++ LL
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL------ 308
Query: 59 TTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRE---TFRYYGYMFDMT 115
L+C L R++ P+ L++ E IR+ T+ + ++
Sbjct: 309 -KYLDCRPQ---------DLP-REVLTT--NPRRLSIIAES-IRDGLATWDNWKHV---N 351
Query: 116 DDQIETRSKEILKLLE-------------LPPAKKI-VGALS----GGQQRRISFAVSLL 157
D++ T + L +LE PP+ I LS + + V+ L
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 158 HNPKLLILD--EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY-IEEAKGAHNIGLMR 214
H L+ E T+ + I ++ E AL+ ++I+ HY I + + ++
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIV--DHYNIPKTFDSDDLIPPY 468
Query: 215 DDQYI-GRLVHHDIVESLVEA------------------LEDALRHGNVINKVDLVDGRG 255
DQY + HH L LE +RH + + G
Sbjct: 469 LDQYFYSHIGHH-----LKNIEHPERMTLFRMVFLDFRFLEQKIRHDST-----AWNASG 518
Query: 256 SIDEVLSRQCTVSVDVD--RPAINEGDYVWTQLEKGY 290
SI L + +P I + D + +L
Sbjct: 519 SILNTLQ-------QLKFYKPYICDNDPKYERLVNAI 548
Score = 53.7 bits (128), Expect = 3e-08
Identities = 40/276 (14%), Positives = 82/276 (29%), Gaps = 68/276 (24%)
Query: 10 DPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69
D ++ K++V+ Y K+ L L P + + G G GKT + +
Sbjct: 122 DNQVF-AKYNVSRLQPYLKLRQA--LLELR---PAKNV-LIDGVLGSGKTWVAL-----D 169
Query: 70 TLDAGTIKLSF----------RQISDIGYMPQELALHGELSIRETFRY-YGYMFDMTDDQ 118
+ ++ S + L ++ T R + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 119 IETRSKEILKLLELPPA---------KKIVGALSGG-------QQRRISFAVSLLHNPKL 162
I+ + +LK K A + + ++++ +S
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT-TTH 288
Query: 163 LILDEPTVGLDP-----ILSQIIW---DRLKEMALNGKTIIITTHYIEEAKGAHNIG-LM 213
+ LD ++ L P +L + + L L ++ I +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-----------IAESI 337
Query: 214 RDD-------QYIGRLVHHDIVESLVEALEDA-LRH 241
RD +++ I+ES + LE A R
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Score = 28.3 bits (62), Expect = 3.6
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 80 FRQI-SDIGYMPQEL-----ALHGELSIRET---FRYY-GYMFDMTDDQIETRSKEILKL 129
FR + D ++ Q++ A + SI T ++Y Y+ D D + E IL
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-NDPKYERLVNAILDF 551
Query: 130 LE 131
L
Sbjct: 552 LP 553
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 51.4 bits (124), Expect = 8e-08
Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 30/199 (15%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQISD 85
+ + +L+GL+L+V +++ ++GP+G GK+TL + GR + GT++ + +
Sbjct: 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88
Query: 86 IGYMPQELALHG---------ELS-------IRETF---RYYGYMFDMTDDQIETRSKEI 126
+ P++ A G E+ ++ R Y + + +E
Sbjct: 89 LS--PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 127 LKLLELPP--AKKIVGA-LSGGQQRR--ISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
+ LL++P + V SGG+++R I +++L P+L ILDE GLD +++
Sbjct: 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDI-LQMAVL-EPELCILDESDSGLDIDALKVVA 204
Query: 182 DRLKEMALNGKTIIITTHY 200
D + + ++ II THY
Sbjct: 205 DGVNSLRDGKRSFIIVTHY 223
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 51.0 bits (123), Expect = 9e-08
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 42/203 (20%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQISD 85
I +LKG+NL VP+ +++ L+GP+G GK+TL + G T++ G I L I +
Sbjct: 12 SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILE 71
Query: 86 IGYMPQELALHG---------EL--------------SIRETFRYYGYMFDMTDDQIETR 122
+ P E A G E+ + ++ + T+
Sbjct: 72 LS--PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGR--------EVGVAEFWTK 121
Query: 123 SKEILKLLELPP--AKKIVGA-LSGGQQRR--ISFAVSLLHNPKLLILDEPTVGLDPILS 177
K+ L+LL+ + + SGG+++R I + +L P +LDE GLD
Sbjct: 122 VKKALELLDWDESYLSRYLNEGFSGGEKKRNEI-LQLLVL-EPTYAVLDETDSGLDIDAL 179
Query: 178 QIIWDRLKEMALNGKTIIITTHY 200
+++ + M ++ THY
Sbjct: 180 KVVARGVNAMRGPNFGALVITHY 202
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 47.4 bits (113), Expect = 4e-07
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 142 LSGGQQRRISFAVSL------LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
LSGG++ + A L LLILDEPT LD + + ++ +I
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 196 ITTHYIEEAKGAHNI 210
+ +H E A ++
Sbjct: 118 LVSHDEELKDAADHV 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 43.7 bits (103), Expect = 4e-05
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 114 MTDDQIETRSKEILKLLELPPAKKI-VGALSGGQQRRISFAVSL-------LHNPKLLIL 165
+ ++ P + + LSGG+Q ++ ++ L + + +IL
Sbjct: 252 FDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIIL 311
Query: 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
DEPTV LD + + +++ + IIIT
Sbjct: 312 DEPTVYLDENRRAKLAEIFRKVKSIPQMIIIT 343
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 35.6 bits (83), Expect = 0.012
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69
V SA G ++ L E I L GPSG GK+++L+ + G
Sbjct: 145 VLKVSAKTGEGIDELVDYL-----EGFICILAGPSGVGKSSILSRLTGEE 189
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 35.6 bits (82), Expect = 0.015
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 139 VGALSGGQQRRISFA----VSLLHNPKL--LILDEPTVGLDP-ILSQIIWDRLKEMALNG 191
LSGG++ IS + ++ + + +L +DE LD +I LKE+
Sbjct: 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIA-SVLKELERLN 335
Query: 192 KTIIITTHYIEEAKGA 207
K I+ TH E A
Sbjct: 336 KVIVFITH-DREFSEA 350
Score = 26.7 bits (59), Expect = 8.8
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 44 ENKIYGLLGPSGCGKTTLL 62
++ I + GP+G GK++L
Sbjct: 22 QSGITVVEGPNGAGKSSLF 40
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 34.7 bits (80), Expect = 0.018
Identities = 23/200 (11%), Positives = 52/200 (26%), Gaps = 77/200 (38%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
L G G GKT LL I ELA S+
Sbjct: 59 LHGSFGVGKTYLLAAIA------------------------NELAKRNVSSL------IV 88
Query: 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169
Y+ ++ + + + + + + +L+LD+
Sbjct: 89 YVPELFRELKHSLQDQTMNEK-----------------------LDYIKKVPVLMLDD-- 123
Query: 170 VGLDP--------ILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221
+G + + I+ R+ T+ N + + ++
Sbjct: 124 LGAEAMSSWVRDDVFGPILQYRM----FENLPTFFTS----------NFDMQQLAHHLTY 169
Query: 222 LVHHDIVESLVEALEDALRH 241
+ + + + +R+
Sbjct: 170 SQRGEEEKVKAARIMERIRY 189
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 34.9 bits (81), Expect = 0.020
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
V +TS+ + ++ ++K G SG GK++LLN I L I
Sbjct: 153 VYLTSSKDQDSLADIIPHF-----QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 204
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 34.8 bits (81), Expect = 0.026
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
+ TSA +G + + L + KI + G SG GK++LLN I L +
Sbjct: 149 IVKTSAKTGMGIEELKEYL-----KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 200
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 34.2 bits (79), Expect = 0.037
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67
V + S++ + G + + L +I G SG GK++LLN ++G
Sbjct: 195 VLMVSSHTQDGLKPLEEAL-----TGRISIFAGQSGVGKSSLLNALLG 237
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 33.7 bits (77), Expect = 0.064
Identities = 29/201 (14%), Positives = 53/201 (26%), Gaps = 74/201 (36%)
Query: 41 NVPENKIYGLL--GPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98
P + GL G G GK+ LL + EL+
Sbjct: 146 QYPSAEQKGLYLYGDMGIGKSYLLAAMA------------------------HELSEKKG 181
Query: 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLH 158
+S + D S +K + +
Sbjct: 182 VST-----TLLHFPSFAIDVKNAISNGSVKEE-----------------------IDAVK 213
Query: 159 NPKLLILDEPTVGLDP--------ILSQIIWDRLKEMALNGKTIIITTHY-IEEAKGAHN 209
N +LILD+ +G + +L I+ R+ L T++Y + +
Sbjct: 214 NVPVLILDD--IGAEQATSWVRDEVLQVILQYRM----LEELPTFFTSNYSFADLERKWA 267
Query: 210 IGLMRDDQYIG-----RLVHH 225
D+ + R+ +
Sbjct: 268 TIKGSDETWQAKRVMERVRYL 288
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 31.9 bits (72), Expect = 0.13
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 46 KIYGLLGPSGCGKTTLLNCIV 66
I ++G S GKTTL+ ++
Sbjct: 3 LILSIVGTSDSGKTTLITRMM 23
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 31.6 bits (71), Expect = 0.15
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 46 KIYGLLGPSGCGKTTLLNCIV 66
++ ++G GKTTL+ V
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWV 25
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 32.5 bits (74), Expect = 0.15
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 10/59 (16%)
Query: 49 GLL--GPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETF 105
G+L GP G GKT + + N A ++ +I +LA E ++R+ F
Sbjct: 240 GILLYGPPGTGKTLIARAVA--NETGAFFFLINGPEIMS------KLAGESESNLRKAF 290
Score = 27.8 bits (62), Expect = 5.0
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 50 LLGPSGCGKTTL 61
GP GCGKT L
Sbjct: 516 FYGPPGCGKTLL 527
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 31.6 bits (72), Expect = 0.16
Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 68/191 (35%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
+G G GKT L + + I+ F D+
Sbjct: 43 FVGSPGVGKTHLAVAT-LKAIYEKKGIRGYFFDTKDL----------------------- 78
Query: 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169
+F + E + + LK + N +L+LD+
Sbjct: 79 -IFRLKHLMDEGKDTKFLKTVL---------------------------NSPVLVLDD-- 108
Query: 170 VGLDP-------ILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRL 222
+G + ++S II R N K+ IITT+Y + + ++ + RL
Sbjct: 109 LGSERLSDWQRELISYIITYRY----NNLKSTIITTNYSLQREEESSVRI--SADLASRL 162
Query: 223 VHHDIVESLVE 233
+ +V + E
Sbjct: 163 GEN-VVSKIYE 172
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 31.6 bits (72), Expect = 0.18
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 24/106 (22%)
Query: 51 LGPSGCGKTTLLNCI------------VGRNTLDAGTIKLSFRQISDIGYMPQELALH-- 96
GP GKTT L I V T D T+ F + + H
Sbjct: 20 YGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLY 79
Query: 97 ---GELSIRETFRYYG-------YMFDMTDDQIETRSKEILKLLEL 132
G++ + + ++ D +++ ++ + + E
Sbjct: 80 TVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMREN 125
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 32.0 bits (72), Expect = 0.19
Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 40/241 (16%)
Query: 51 LGPSGCGKTTLLNCI---------VGRNTLDAGTIKLSFRQISDIG-------YMPQELA 94
+G +G GKTTL V LD G +L + D+ M +
Sbjct: 20 VGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYG 79
Query: 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAV 154
+G +I E++ F+ ++I KE +L P + R +
Sbjct: 80 PNG--AIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMEN-- 135
Query: 155 SLLHNPKLLILDEPTVGLDP-------ILSQIIWDRLKEMALNGKTIIITTHYIEEAKGA 207
L P ++ + +P + P + +I RL + + + E +
Sbjct: 136 --LPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIP---ALNKVDLLSEEEKE 190
Query: 208 HNIGLMRDDQYIGRLVHHD------IVESLVEALEDALRHGNVINKVDLVDGRGSIDEVL 261
+ D Y+ + D + + + + L V+ + G +++
Sbjct: 191 RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVL-YLSAKTREG-FEDLE 248
Query: 262 S 262
+
Sbjct: 249 T 249
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 31.4 bits (70), Expect = 0.23
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 46 KIYGLLGPSGCGKTTLLNCIV 66
+ SG GKTTLL ++
Sbjct: 7 PLLAFAAWSGTGKTTLLKKLI 27
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 31.4 bits (72), Expect = 0.32
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 7/33 (21%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS 84
GP G GKTTL I A +IS
Sbjct: 57 GPPGTGKTTLAEVI-------ARYANADVERIS 82
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 30.6 bits (70), Expect = 0.34
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
L+G SG G++ + N ++ +N
Sbjct: 24 LIGASGVGRSHIKNALLSQN 43
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 31.3 bits (71), Expect = 0.35
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 14/75 (18%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD--IGYMPQE 92
LK N+ VP I G+ G G GK+ + + I +S ++ G
Sbjct: 28 LKLPNIKVP--LILGIWGGKGQGKSFQCELVF--RKMGINPIMMSAGELESGNAG----- 78
Query: 93 LALHGELSIRETFRY 107
IR+ +R
Sbjct: 79 ---EPAKLIRQRYRE 90
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 31.1 bits (70), Expect = 0.37
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
++G G GK++ +N I+G
Sbjct: 44 VMGKGGVGKSSTVNSIIGER 63
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 30.5 bits (70), Expect = 0.38
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
LLG G G+ + N ++ ++
Sbjct: 10 LLGAHGVGRRHIKNTLITKH 29
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 30.6 bits (70), Expect = 0.38
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
PSGCGKTT+ N ++ + + I S
Sbjct: 34 SPSGCGKTTVANKLLEKQKNN---IVKS 58
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 30.7 bits (69), Expect = 0.39
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
L+G +G GK+ N I+GR
Sbjct: 34 LVGKTGAGKSATGNSILGRK 53
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 30.6 bits (70), Expect = 0.44
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
PSG GK++L+ ++ ++S
Sbjct: 23 APSGAGKSSLIQALLKTQ--PLYDTQVS 48
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 30.5 bits (69), Expect = 0.51
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+ Q + + + + + P G DP L+ RLKE+ K II H
Sbjct: 181 FIETEQSGSVLLTIDASYTKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKPIIFFGH 239
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.1 bits (69), Expect = 0.52
Identities = 24/139 (17%), Positives = 52/139 (37%), Gaps = 14/139 (10%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL--HGELSIRETFRY 107
+LG GK+T LN ++G N L + + ++ + Y P++ + + +
Sbjct: 74 VLGDMKRGKSTFLNALIGENLLPSDVNPCTAV-LTVLRYGPEKKVTIHFNDGKSPQQLDF 132
Query: 108 YGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167
+ + T D E + E K P V + + ++LL + I+D
Sbjct: 133 QNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAV----------VEYPLTLLQK-GIEIVDS 181
Query: 168 PTVGLDPILSQIIWDRLKE 186
P + +++ +
Sbjct: 182 PGLNDTEARNELSLGYVNN 200
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 30.9 bits (69), Expect = 0.54
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLL 62
+LK +V K+ + G GCGKT +
Sbjct: 150 LLKDGEPHVSSAKVVLVDGVPGCGKTKEI 178
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 30.7 bits (70), Expect = 0.54
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 12/55 (21%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYG------------LLGPSGCGKTTL 61
SVAV + YK++ LK + ++ L+GP+G GKT +
Sbjct: 34 SVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLM 88
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.0 bits (67), Expect = 0.57
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 43 PENKIYGLLGPSGCGKTTL 61
++ IY L+G SG GK+ +
Sbjct: 6 HDHHIYVLMGVSGSGKSAV 24
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 30.8 bits (69), Expect = 0.61
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIV 66
+ + GP+G G TTL I+
Sbjct: 44 KKHHVTINGPAGTGATTLTKFII 66
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 30.3 bits (69), Expect = 0.70
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 22/68 (32%)
Query: 199 HYIEEAKG-------AHNIGLMRD--DQYIGRLVHHDIVESLVEALEDALRHGNVINKVD 249
+E ++ + N+ L+ + D+YI RL ++I + +KVD
Sbjct: 59 DILENSRHYGFDTKFSFNLPLLVERRDKYIQRL--NNIYRQNLSK-----------DKVD 105
Query: 250 LVDGRGSI 257
L +G S
Sbjct: 106 LYEGTASF 113
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.1 bits (67), Expect = 0.73
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69
G + ++G SG GK+TL+N + +
Sbjct: 5 SGFEFTL------MVVGESGLGKSTLINSLFLTD 32
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 29.8 bits (68), Expect = 0.82
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 52 GPSGCGKTTLLNCIVGRN 69
GPSG GK+TLL + +
Sbjct: 11 GPSGAGKSTLLKKLFQEH 28
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 30.3 bits (68), Expect = 0.82
Identities = 24/186 (12%), Positives = 56/186 (30%), Gaps = 40/186 (21%)
Query: 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG------TIKLSFRQI----SDIGYMPQ 91
+P + + G SG GKT + ++ T + + + I G+
Sbjct: 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA 95
Query: 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRIS 151
+L G+L I + + + + I ++
Sbjct: 96 KLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQ-------------------- 135
Query: 152 FAVSLLHNPKLLILD-----EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206
+ + + +D ++ + ++ + + G T ++TT IEE
Sbjct: 136 -----KYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGP 190
Query: 207 AHNIGL 212
G+
Sbjct: 191 IARYGV 196
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 29.9 bits (68), Expect = 0.87
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNL---NVPENKIYGLLGPSGCGKTTL 61
+VAV + YK++ N G+ L N+ L+GP+G GKT L
Sbjct: 28 AVAVYNHYKRLRNGDTSNGVELGKSNIL------LIGPTGSGKTLL 67
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 29.4 bits (67), Expect = 0.89
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 52 GPSGCGKTTLLNCIVGRN 69
PSG GKT+L+ +V
Sbjct: 14 APSGAGKTSLVRALVKAL 31
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 29.4 bits (67), Expect = 0.90
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 49 GLL----GPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
GLL GPSG GK T+ + S
Sbjct: 8 GLLIVLSGPSGVGKGTVREAVFKDPETS---FDYS 39
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 29.6 bits (66), Expect = 1.00
Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 16/99 (16%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQISDIGYMPQELA-LHGELSIRE 103
L+G GK+++ + + + + T K+ IS+ ++ ++ G++ +
Sbjct: 25 LMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD 84
Query: 104 TF----RYYG------YMFDMTDDQIETRSKEILKLLEL 132
+ Y+ D DD +E ++ + + +
Sbjct: 85 PTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKA 123
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 29.5 bits (67), Expect = 1.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 52 GPSGCGKTTLLNCIVGRN 69
GPS GK+T++ C+ R
Sbjct: 27 GPSAVGKSTVVRCLRERI 44
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 29.4 bits (67), Expect = 1.1
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
GPSG GK T+ I + K S
Sbjct: 13 GPSGVGKGTVRKRIFEDPSTS---YKYS 37
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 30.2 bits (68), Expect = 1.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 43 PENKIYGLLGPSGCGKTTL 61
E + G +GCGK+ L
Sbjct: 145 GEPGWVTIYGMAGCGKSVL 163
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 29.0 bits (66), Expect = 1.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 52 GPSGCGKTTLLNCIVGRN 69
GPSG GK+TLL +
Sbjct: 8 GPSGTGKSTLLKKLFAEY 25
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
+ GP GKT+LL +
Sbjct: 17 IAGPQNSGKTSLLTLLTT 34
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 28.9 bits (65), Expect = 1.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 50 LLGPSGCGKTTLLN 63
+ GP GKT+LL
Sbjct: 53 IAGPQNSGKTSLLT 66
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 29.1 bits (66), Expect = 1.4
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 52 GPSGCGKTTLLNCIVGRN 69
GPSG GK TL+ ++
Sbjct: 30 GPSGVGKGTLIKKLLNEF 47
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.4 bits (65), Expect = 1.4
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 18/102 (17%)
Query: 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL------DAGTIKLSFRQISDIGYM 89
KG + ++G SG GK+TL+N + + A QI
Sbjct: 15 KGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVE 68
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
+E + L++ +T GY + K I+ ++
Sbjct: 69 IEERGVKLRLTVVDT---PGYGDAINCRDC---FKTIISYID 104
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 29.3 bits (65), Expect = 1.4
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77
+ G +G GK++ +N + G + G K
Sbjct: 73 AVTGETGSGKSSFINTLRGIGNEEEGAAK 101
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.9 bits (65), Expect = 1.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV 66
VL+ L+ P ++ L G G GK+TL N +
Sbjct: 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLA 43
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 29.1 bits (65), Expect = 1.5
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 42 VPENKIYGLLGPSGCGKTTLL 62
PE L G +G GKTT
Sbjct: 27 FPEGTTVLLTGGTGTGKTTFA 47
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 29.4 bits (67), Expect = 1.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTL 61
LK +++ +P K+ L G SG GK++L
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 27.1 bits (61), Expect = 9.6
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 208 HNIGLMRDDQYIGRL-VHHDIVESLVEALEDALRHGNVINKVDLVDGR 254
H+I ++ D R+ + I L ++LE AL+ + VD++
Sbjct: 218 HSIDVVVD-----RIIIKDGIAARLADSLETALKLADGKVVVDVIGEG 260
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 28.9 bits (65), Expect = 1.7
Identities = 5/14 (35%), Positives = 6/14 (42%)
Query: 50 LLGPSGCGKTTLLN 63
+G GKT L
Sbjct: 12 FVGLCDSGKTLLFV 25
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken
structural genomics/proteomics in RSGI, polxc, PHP, DRP
lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB:
3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Length = 575
Score = 29.3 bits (65), Expect = 1.7
Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 35/173 (20%)
Query: 80 FRQISDIGYMPQELALHGELSIRETFRYYGY-----MFDMTDDQIETRSKEILKLLELPP 134
F +I + G+ FR Y D IE +++ + L P
Sbjct: 10 FEEIGLM------SEFLGD----NPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELP 59
Query: 135 ------AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
A+KI+ L G+ R+ + L +++ P VG P ++++++ L
Sbjct: 60 GVGPDLAEKILEFLRTGKVRKHEELSRKVPRGVLEVMEVPGVG--PKTARLLYEGLG--- 114
Query: 189 LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRH 241
I + +E+ K A + G + + G I E L A R
Sbjct: 115 -------IDS--LEKLKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRR 158
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 28.7 bits (65), Expect = 1.7
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 40 LNVPENKIYGLLGPSGCGKTTLLNCIV 66
++ P+ + G+ G + GKTTL +
Sbjct: 1 MSAPKPFVIGIAGGTASGKTTLAQALA 27
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 29.0 bits (66), Expect = 1.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLN 63
L+ ++L++P + + G SG GK++L
Sbjct: 36 LRSVDLDLPRDALIVFTGLSGSGKSSLAF 64
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.4 bits (66), Expect = 1.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 50 LLGPSGCGKTTLLNC 64
L+G +GCGKT
Sbjct: 928 LVGKAGCGKTATWKT 942
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 28.7 bits (65), Expect = 2.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 52 GPSGCGKTTLLNCIVGRN 69
GPSG GK TL+ ++
Sbjct: 19 GPSGVGKGTLIKKVLSEF 36
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 29.1 bits (65), Expect = 2.0
Identities = 25/123 (20%), Positives = 37/123 (30%), Gaps = 53/123 (43%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL-ALHGELSIRETFRYY 108
L GP G GKTT + + ++GY E A
Sbjct: 82 LYGPPGIGKTTAAHLVA-----------------QELGYDILEQNA-------------- 110
Query: 109 GYMFDMTDDQIETRSKEILKLLELPPAKKIVGALS----GGQQRRISFAVSLLHNPKLLI 164
+D RSK +L + AL G + A +L ++I
Sbjct: 111 ------SDV----RSKTLLN-------AGVKNALDNMSVVGYFKHNEEAQNLNGKHFVII 153
Query: 165 LDE 167
+DE
Sbjct: 154 MDE 156
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 28.5 bits (63), Expect = 2.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
L+G +G GK+ N I+ +
Sbjct: 27 LVGKTGTGKSAAGNSILRKQ 46
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 28.5 bits (63), Expect = 2.1
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 50 LLGPSGCGKTTL 61
++G SG GKTT+
Sbjct: 34 VMGVSGSGKTTI 45
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 28.5 bits (63), Expect = 2.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
L+G +G GK+ N I+G+
Sbjct: 26 LVGRTGAGKSATGNSILGQR 45
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 28.4 bits (63), Expect = 2.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 45 NKIYGLLGPSGCGKTTL 61
K+Y + GP+G GK+T
Sbjct: 2 KKLYIITGPAGVGKSTT 18
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 28.1 bits (63), Expect = 2.5
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 46 KIYGLLGPSGCGKTTL 61
+ L GP C K+T+
Sbjct: 2 TLIILEGPDCCFKSTV 17
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 28.3 bits (63), Expect = 2.5
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 49 GLLGPSGCGKTTLLNCIV 66
G+ G + GK+++ IV
Sbjct: 26 GVSGGTASGKSSVCAKIV 43
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 28.4 bits (64), Expect = 2.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 88 YMPQELALHGEL--SIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
++P E L L +IR + YG+ IET + E L++L
Sbjct: 21 FLPSEKRLELYLLDTIRRVYESYGF------TPIETPAVERLEVL 59
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 28.4 bits (64), Expect = 2.8
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNT 70
G+ SG GK+TLL I
Sbjct: 75 GIFAGSGVGKSTLLGMIC-NGA 95
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 28.1 bits (63), Expect = 2.8
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 42 VPENKIYGLLGPSGCGKTTLL 62
+P+ L G G GKT
Sbjct: 20 IPQGFFIALTGEPGTGKTIFS 40
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 28.0 bits (62), Expect = 3.1
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 18/100 (18%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQISDIGYMP--------QELALH 96
L+G SG GK+++ + I + TI + + +G M Q++ +
Sbjct: 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67
Query: 97 GELSI--RETFRYYG---YMFDMTDDQIETRSKEILKLLE 131
+ F+ ++FD+ ++ + K L+
Sbjct: 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALK 107
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 28.2 bits (63), Expect = 3.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 49 GLLGPSGCGKTTLLNCIV 66
G+ G + GK+T+ I+
Sbjct: 29 GVSGGTASGKSTVCEKIM 46
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 28.1 bits (63), Expect = 3.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 42 VPENKIYGLLGPSGCGKTTLL 62
+PE + L G G GKT
Sbjct: 20 IPERNVVLLSGGPGTGKTIFS 40
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1,
riboflavin S; alpha-beta, transferase; HET: INI; 2.53A
{Mesorhizobium loti}
Length = 157
Score = 27.6 bits (62), Expect = 3.4
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 224 HHDIVESLVEALEDAL-RHGNVINKVDLVDGRGS 256
H DIV+ V A E + G VD+ D G+
Sbjct: 22 HADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGA 55
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 27.7 bits (61), Expect = 3.5
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRE 103
+NK+ + G G G TT + ++++ +S M + +S R+
Sbjct: 2 KNKVVVVTGVPGVGSTTSSQLAMDN----LRKEGVNYKMVSFGSVMFEVAKEENLVSDRD 57
Query: 104 TFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
R + Q + K+ E+ +
Sbjct: 58 QMRKM-----DPETQKRIQKMAGRKIAEMAKESPVA 88
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 28.2 bits (63), Expect = 3.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 52 GPSGCGKTTLLNCI 65
G + GKTT LN I
Sbjct: 267 GETASGKTTTLNAI 280
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 27.7 bits (61), Expect = 3.8
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 50 LLGPSGCGKTTL 61
++G SG GK+++
Sbjct: 23 VMGVSGSGKSSV 34
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 27.4 bits (60), Expect = 4.0
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETF 105
KI + G G GK+T+L + ++ + I+ +M G R+
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEI----LDNQGINNKIINYGDFMLATALKLGYAKDRDEM 57
Query: 106 R 106
R
Sbjct: 58 R 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 27.8 bits (62), Expect = 4.1
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFR 106
L GP G GKT + + A F I+ M +LA E ++R+ F
Sbjct: 243 LYGPPGTGKTLIARAV-------ANETGAFFFLINGPEIM-SKLAGESESNLRKAFE 291
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 27.4 bits (60), Expect = 4.5
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRET 104
++ L G S GK+ ++ C+ ++ L + + + + + A G +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCL--QSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADG 60
Query: 105 FRYYGYMFD 113
G F
Sbjct: 61 GVSIGPEFR 69
>3sam_A 62 kDa protein, rifampicin resistance protein; double-barrel,
jelly-roll, scaffolding protein, structural P
rifampicin-resistance protein; 2.55A {Vaccinia virus}
PDB: 3saq_A 2ygc_A* 2ygb_A
Length = 576
Score = 27.8 bits (61), Expect = 4.5
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKI 138
YMPQ ++L G ++ F++ D I + +L LELP K +
Sbjct: 57 YMPQYISLSGVMTNDGPDNQAIASFEIRDQYITALNHLVLS-LELPEVKGM 106
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 27.9 bits (63), Expect = 4.7
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 22/76 (28%)
Query: 142 LSGGQQRRISFAVSLLHNPK---LLILDEPTVGLDP-----ILSQIIWDRLKEMALNGKT 193
LSGG+ +RI A L + + + +LDEPT GL P + Q+ +L + G T
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQL--VKLVD---AGNT 785
Query: 194 IIITTHYIEEAKGAHN 209
+I +E H
Sbjct: 786 VIA----VE-----HK 792
>3f6g_B Alpha-isopropylmalate synthase; licmsc, allosteric regulation,
feedback inhibition, selectivity, specificity,
transferase; 2.00A {Leptospira interrogans} PDB: 3f6h_A
Length = 127
Score = 26.6 bits (59), Expect = 5.0
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 218 YIGRLVHHDIVESLVEALEDAL 239
+ VH D + V A E L
Sbjct: 97 FKTMGVHPDQTVAAVHATEKML 118
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 27.7 bits (62), Expect = 5.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 52 GPSGCGKTTLLNCIVG 67
G +G GKTTL+ ++
Sbjct: 182 GETGSGKTTLMKALMQ 197
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP:
c.16.1.1 PDB: 1t13_A* 1xn1_A
Length = 158
Score = 27.1 bits (61), Expect = 5.1
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 224 HHDIVESLVEALEDAL-RHGNVINKVDLVD 252
H DIV+ ++ L +V++ D
Sbjct: 21 HADIVDEARKSFVAELAAKTGGSVEVEIFD 50
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente
structural genomics, JCSG, protein structure initiative,
PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae}
Length = 352
Score = 27.5 bits (61), Expect = 5.1
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 214 RDDQYIGRLVHHDIVESLVEALEDALR-HGNVINKVDLVDGRGSIDEVLSRQCTVSVDVD 272
D Y+ L+ V ++ +A A HG + + L+ ++
Sbjct: 269 PDTLYVDSLIGVHTVNTVPDATLKAFIDHGTAKATLT--ESADEARARLA-------EIA 319
Query: 273 RPAINEGDYVWTQLEK 288
I+ + + +L++
Sbjct: 320 ALGIDV-ETLAARLQE 334
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.3 bits (60), Expect = 5.3
Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 36/161 (22%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108
+ G G GKTTL+ IV R A G+ +E+ E R F
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAI------------GFWTEEVR-DPETKKRTGF--- 47
Query: 109 GYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL---------HN 159
I T K+ + + +KK+VG+ Q A+ +L
Sbjct: 48 --------RIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDR 99
Query: 160 PKLLILDEPTVGLDPILSQIIWDRLKE-MALNGKTIIITTH 199
K++I+DE +G + S+ D +++ M ++ T
Sbjct: 100 RKVIIIDE--IGKMELFSKKFRDLVRQIMHDPNVNVVATIP 138
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 27.7 bits (62), Expect = 5.4
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNT 70
GL SG GK+ LL + R T
Sbjct: 161 GLFAGSGVGKSVLLGMMA-RYT 181
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 27.3 bits (60), Expect = 5.6
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 47 IYGLLGPSGCGKTTLLNCI 65
I + G SG G +T+ +
Sbjct: 7 IISVTGSSGAGTSTVKHTF 25
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 27.8 bits (63), Expect = 5.7
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 9/37 (24%)
Query: 142 LSGGQQRRISFAVSLLHNPK------LLILDEPTVGL 172
LSGG+ +RI A L K L ILDEPTVGL
Sbjct: 806 LSGGEAQRIKLASEL---RKRDTGRTLYILDEPTVGL 839
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Length = 343
Score = 27.3 bits (61), Expect = 5.9
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 172 LDPILSQIIWDRLKEMALNGKTIIITTH 199
L +++Q D + I+I +H
Sbjct: 2 LTKVIAQAHIDHFTKWFERADKIVIVSH 29
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 26.9 bits (60), Expect = 6.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 52 GPSGCGKTTLLNCIV 66
G S GKTTL N +
Sbjct: 29 GLSRSGKTTLANQLS 43
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 27.3 bits (60), Expect = 6.1
Identities = 11/86 (12%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 50 LLGPSGCGKTTLLNCIVG----RNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETF 105
+ G +G GKT ++ ++ + + ++ RQI + +L ++ + T
Sbjct: 50 IYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTG 109
Query: 106 RYYGYMFDMTDDQIETRSKEILKLLE 131
++ + +++ +L+
Sbjct: 110 LSIAELYRRLVKAVRDYGSQVVIVLD 135
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 27.1 bits (60), Expect = 6.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 49 GLLGPSGCGKTTLLNCIV 66
G+ G + GKTTL +
Sbjct: 25 GISGVTNSGKTTLAKNLQ 42
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 27.5 bits (62), Expect = 6.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 177 SQIIWDRLKEMALNGKTIIITTHYIEEAKG 206
+I+ RL + NG I+ T +EE G
Sbjct: 183 EKILIKRLMDKVENGNIILHTNRTLEEVTG 212
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 26.9 bits (60), Expect = 6.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 50 LLGPSGCGKTTLLN 63
++G +G GKTTLL
Sbjct: 7 IVGNTGSGKTTLLQ 20
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 27.3 bits (61), Expect = 6.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 52 GPSGCGKTTLLNCIVG 67
G +G GKTT + I+
Sbjct: 178 GGTGSGKTTYIKSIME 193
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain,
CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus
denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Length = 595
Score = 27.2 bits (60), Expect = 7.1
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 232 VEALEDALRHGNV--INKVDLVDGRGSIDEVLSR 263
+ +E A+ G+ +N V +VDGR + +R
Sbjct: 238 IAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTR 271
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 27.0 bits (59), Expect = 7.2
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 43 PENKIYGLLGPSGCGKTTL 61
I L G G GK+T+
Sbjct: 7 LGGNILLLSGHPGSGKSTI 25
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.1 bits (60), Expect = 7.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 49 GLLGPSGCGKTTLLNCIVGRN 69
+LG G GK++ +N ++G
Sbjct: 40 LVLGKGGVGKSSTVNSLIGEQ 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 27.1 bits (61), Expect = 8.0
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 9/37 (24%)
Query: 142 LSGGQQRRISFAVSLLHNPK------LLILDEPTVGL 172
LSGG+ +R+ A L + L ILDEPT GL
Sbjct: 544 LSGGEAQRVKLAAEL---HRRSNGRTLYILDEPTTGL 577
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 26.8 bits (60), Expect = 8.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 49 GLLGPSGCGKTTLL 62
++G G GKT L+
Sbjct: 34 NIMGAIGSGKTLLI 47
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold,
transferase; 2.10A {Corynebacterium glutamicum}
Length = 360
Score = 27.1 bits (60), Expect = 8.3
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 214 RDDQYIGRLVHHDIVESLVEALEDALRHGNVINKVDLVDGRGSIDEVLSRQCTVSVDVDR 273
Y+ L + V ++ E DA+ ++ L + D V S+ + VD+
Sbjct: 272 AATLYVSELAGPNTVNTMPEGTIDAVLEQGNLHGDTLSNSAAEADAVFSQLEALGVDLAD 331
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 26.8 bits (60), Expect = 8.4
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 49 GLLGPSGCGKTTLL 62
+G G GKT L+
Sbjct: 42 DFMGAIGSGKTLLI 55
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 26.8 bits (60), Expect = 8.5
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLL--GPSGCGKTTLLNCI 65
+G V++ L V I LL GP G GKT +
Sbjct: 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIAL 58
>2o8r_A Polyphosphate kinase; structural genomics, protein structure
initiative, PSI, nysgrc, NEW YORK structural genomics
research consortium; HET: MSE; 2.70A {Porphyromonas
gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Length = 705
Score = 27.1 bits (61), Expect = 9.0
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 203 EAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL---RHGNVI 245
E +++I + RD + + E L + + + G
Sbjct: 225 EVMDSYSIKVSRDADLL---LDAQRPEDLPGEIRKKVKTRKLGAPT 267
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 26.9 bits (60), Expect = 9.0
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLL--GPSGCGKTTLLNCI 65
+G ++K L V + LL GP G GKTT +
Sbjct: 28 VGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALAL 66
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA,
cysteine-sulfenic lyase; HET: ACO PG4; 1.95A
{Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A
1d8c_A* 2jqx_A
Length = 731
Score = 27.0 bits (60), Expect = 9.3
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 9/38 (23%)
Query: 208 HNIGLMRD-------DQYIGRLVHHDIV--ESLVEALE 236
HN+ LM D Q+I + H I+ E + +LE
Sbjct: 624 HNVALMEDRATLRISSQHIANWLRHGILTKEQVQASLE 661
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 26.9 bits (59), Expect = 9.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTL 61
LK + N+P+ + + GP GKTTL
Sbjct: 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTL 185
>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A,
isocitrate lyase, persistence, GLCB, structural
genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP:
c.1.13.1 PDB: 1n8w_A* 2gq3_A*
Length = 741
Score = 27.1 bits (60), Expect = 9.5
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
Query: 208 HNIGLMRD-------DQYIGRLVHHDIV--ESLVEALE 236
H++ LM D Q + + H ++ + +LE
Sbjct: 626 HDVALMEDRATLRISSQLLANWLRHGVITSADVRASLE 663
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 26.4 bits (59), Expect = 9.8
Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 29/116 (25%)
Query: 35 LKGLNLNVPEN---KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ 91
L NL N +I+ L G G GKTT +G+ A + + F D
Sbjct: 13 LGTENLYFQSNAMVRIF-LTGYMGAGKTT-----LGK-AF-ARKLNVPFID-LD-----W 58
Query: 92 ELALHGELSIRETFRYYGYMFDMTDDQIET--RSKEILKLLELPPAKKIVGALSGG 145
+ ++ E F G E R E L E+ + +V + GG
Sbjct: 59 YIEERFHKTVGELFTERG----------EAGFRELERNMLHEVAEFENVVISTGGG 104
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 26.8 bits (59), Expect = 9.9
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 42 VPENKIYGLLGPSGCGKTTL 61
+ I G GKT L
Sbjct: 119 IESMAITEAFGEFRTGKTQL 138
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 26.4 bits (57), Expect = 9.9
Identities = 16/111 (14%), Positives = 33/111 (29%), Gaps = 4/111 (3%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETF 105
K+ L G GK T + I+ + + + + R+ F
Sbjct: 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEF 61
Query: 106 RYYGY----MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISF 152
Y ++T ++ T ++ L K V + ++F
Sbjct: 62 EGIDYDRETNLNLTKLEVITIMEQAFCYLNGKSPIKGVFVFDDEGKESVNF 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.402
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,707,551
Number of extensions: 302744
Number of successful extensions: 1688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1606
Number of HSP's successfully gapped: 286
Length of query: 291
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 198
Effective length of database: 4,105,140
Effective search space: 812817720
Effective search space used: 812817720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)