RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6612
(291 letters)
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 168 bits (427), Expect = 5e-52
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 20/230 (8%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+++++ +T K+ GN + LNL + + + LLGPSGCGKTT L I G
Sbjct: 7 VKLEN---LT---KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 60
Query: 74 GTIKLSFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126
G I R ++ I + Q A+ +++ E + + D+I+ R +
Sbjct: 61 GRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 127 LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
+LL++ + LSGGQ++R++ A +++ P +L++DEP LD L + +K
Sbjct: 121 AELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 180
Query: 186 EMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
++ T I TH EA I +M G+L+ +
Sbjct: 181 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNR----GQLLQIGSPTEVYL 226
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 157 bits (399), Expect = 6e-48
Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 14/225 (6%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
+V V K+IG +LKG++ + E +I+GL+GP+G GKTT L I +G + +
Sbjct: 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 61
Query: 79 SFRQI--------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
+ + I Y+P+E + + E R+ + + +IE + ++
Sbjct: 62 FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA 121
Query: 131 ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
L K V S G R++ A +L+ NP+L ILDEPT GLD + ++ + LK+ +
Sbjct: 122 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 181
Query: 190 NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
G TI++++H + E + I L+ + G +V VE L E
Sbjct: 182 EGLTILVSSHNMLEVEFLCDRIALIHN----GTIVETGTVEELKE 222
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 152 bits (385), Expect = 1e-45
Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 30/233 (12%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-- 84
K+ G H VLKG++L + ++G SG GK+T L CI G I ++ + I+
Sbjct: 10 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLV 69
Query: 85 --------------------DIGYMPQELALHGELSIRETFRYYG-YMFDMTDDQIETRS 123
+ + Q L +++ E + ++ R+
Sbjct: 70 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA 129
Query: 124 KEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
+ L + + K LSGGQQ+R+S A +L P +L+ DEPT LDP L +
Sbjct: 130 LKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL 189
Query: 182 DRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
++++A GKT+++ TH + A+ + ++ + G++ E +
Sbjct: 190 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ----GKIEEEGDPEQVFG 238
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 150 bits (379), Expect = 8e-45
Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 20/231 (8%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
V + +K G ++ ++L V + + LLGPSGCGKTT L I G G I +
Sbjct: 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62
Query: 79 SFRQIS-------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
+ ++ DI + Q AL+ +++ + + + + +I+ R +E
Sbjct: 63 GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE 122
Query: 126 ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+ +LL L + LSGGQ++R++ +++ P++ ++DEP LD L + L
Sbjct: 123 VAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182
Query: 185 KEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
K++ G T I TH EA I +M G L + + +
Sbjct: 183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNR----GVLQQVGSPDEVYD 229
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 149 bits (377), Expect = 1e-44
Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 27/231 (11%)
Query: 13 IIEVKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+I++K+ VT YK + LK +NLN+ E + ++GPSG GK+T+LN I +
Sbjct: 1 MIKLKN---VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57
Query: 72 DAGTIKLSFRQISD-------------IGYMPQELALHGELSIRETFRY---YGYMFDMT 115
G + + + +D IG++ Q+ L L+ E + Y M+
Sbjct: 58 TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS 117
Query: 116 DDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
++ R+ E LK+ EL A LSGGQQ+R++ A +L +NP +++ D+PT LD
Sbjct: 118 GEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 174 PILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
+ I LK++ GKT+++ TH I A+ I ++D G +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD----GEVE 224
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 146 bits (370), Expect = 1e-43
Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 22/233 (9%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
++EV+ + Y G +KG++L VP +I L+G +G GKTT L+ I G
Sbjct: 6 VLEVQS---LHVYY---GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ 59
Query: 73 AGTIKLSF----------RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122
G I + I +P+ + EL++ E Y +
Sbjct: 60 KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL 119
Query: 123 SKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
L K++ G LSGG+Q+ ++ +L+ PKLL++DEP++GL PIL ++
Sbjct: 120 EWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 182 DRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ ++++ G TI++ A AH ++ G++V L++
Sbjct: 180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLET----GQIVLEGKASELLD 228
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 146 bits (369), Expect = 2e-43
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 20/230 (8%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+++++ VT K G VV K +NL++ E + +GPSGCGK+TLL I G T+ +
Sbjct: 1 VQLQN---VT---KAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 54
Query: 74 GTIKLSFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126
G + + ++++D +G + Q AL+ LS+ E + + + I R ++
Sbjct: 55 GDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV 114
Query: 127 LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
++L+L + ALSGGQ++R++ +L+ P + +LDEP LD L + +
Sbjct: 115 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 174
Query: 186 EMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ G+T+I TH EA A I ++ GR+ L
Sbjct: 175 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA----GRVAQVGKPLELYH 220
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 145 bits (368), Expect = 3e-43
Identities = 59/237 (24%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 13 IIEVKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+I++ + +T + + + L ++L+VP +IYG++G SG GK+TL+ C+
Sbjct: 1 MIKLSN---ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 57
Query: 72 DAGTIKLSFRQISD------------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQI 119
G++ + ++++ IG + Q L ++ + + D++
Sbjct: 58 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 117
Query: 120 ETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
+ R E+L L+ L LSGGQ++R++ A +L NPK+L+ DE T LDP ++
Sbjct: 118 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 179 IIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
I + LK++ G TI++ TH ++ K + ++ + G L+ D V +
Sbjct: 178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISN----GELIEQDTVSEVFS 230
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 143 bits (363), Expect = 3e-42
Identities = 53/249 (21%), Positives = 113/249 (45%), Gaps = 35/249 (14%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
EI+ ++ + K G L G++++V + + ++GP+G GK+TL+N I G
Sbjct: 3 EILRTEN---IV---KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA 56
Query: 72 DAGTIKLSFRQISD----------IGYMPQELALHGELSIRETFRYYGYMFDMT------ 115
D G + + I++ I Q E+++ E +
Sbjct: 57 DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLF 116
Query: 116 -------DDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167
++++ ++ +IL+ L+L + G LSGGQ + + +L+ NPK++++DE
Sbjct: 117 YKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226
P G+ P L+ I++ + E+ G T +I H ++ ++ +M + G+++
Sbjct: 177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFN----GQIIAEG 232
Query: 227 IVESLVEAL 235
E ++ +
Sbjct: 233 RGEEEIKNV 241
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 144 bits (364), Expect = 3e-42
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 14/218 (6%)
Query: 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80
V+ ++ + + VLK +NLN+ + ++ + G +G GKT+LL I+G G IK S
Sbjct: 38 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 97
Query: 81 RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-----PA 135
R + + Q + +I+E + + + + + +
Sbjct: 98 R----VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVL 152
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
+ LSGGQ+ RIS A ++ + L +LD P LD + +++ + KT I
Sbjct: 153 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 196 ITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ T +E + A I ++ G + L
Sbjct: 213 LVTSKMEHLRKADKILILHQ----GSSYFYGTFSELQS 246
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 137 bits (346), Expect = 2e-40
Identities = 45/197 (22%), Positives = 90/197 (45%), Gaps = 14/197 (7%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+E++ ++ Y K VL+ + + + + + GP+G GKTTLL I
Sbjct: 2 KLEIRD---LSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 54
Query: 73 AGTIKL----SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
G I + I ++P+E+ + ++S+ + + ++ + ++ E + L+
Sbjct: 55 KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM--DALE 112
Query: 129 LLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+E+ KK +G LS G RR+ A +LL N ++ +LD+P V +D + + E+
Sbjct: 113 SVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 172
Query: 189 LN-GKTIIITTHYIEEA 204
G II + +
Sbjct: 173 KEKGIVIISSREELSYC 189
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 134 bits (339), Expect = 6e-39
Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 23/235 (9%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
I VK+ V+ +KK G V L +N+N+ + +G+LGPSG GKTT + I G +
Sbjct: 4 IIVKN---VSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 74 GTIKLSFRQIS------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121
G + R ++ IG + Q AL+ L+ E + M+ ++I
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 122 RSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
R +E+ K+L++ LSG QQ+R++ A +L+ +P LL+LDEP LD +
Sbjct: 120 RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 181 WDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
+KE+ G T+++ +H + A +G++ G+LV E L +
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVK----GKLVQVGKPEDLYD 230
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 134 bits (338), Expect = 1e-38
Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 28/237 (11%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+E ++ VT Y L+ +NL +P K L+G SG GK+T+ + I +D
Sbjct: 14 LEFRN---VTFTYPG-REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 69
Query: 74 GTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
G I + + + + + Q + L + Y + + +QIE ++
Sbjct: 70 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN--IAYARTEEYSREQIEEAAR 127
Query: 125 --EILKLLELPPAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
+ + I+G LSGGQ++RI+ A +LL + +LILDE T LD
Sbjct: 128 MAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 187
Query: 177 SQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ I L E+ +T ++ H + + A I ++ D G +V L+
Sbjct: 188 ERAIQAALDELQ-KNRTSLVIAHRLSTIEQADEIVVVED----GIIVERGTHSELLA 239
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 131 bits (332), Expect = 8e-38
Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 25/236 (10%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
++ +H V AY + +L+ ++ N I GPSG GK+T+ + +
Sbjct: 1 MLSARH---VDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT 55
Query: 73 AGTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123
AG I + + I + IG++ Q+ A+ + D
Sbjct: 56 AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDL 115
Query: 124 KEILKLLELPPAKKIV------GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
+E P + +SGGQ++R++ A + L NPK+L+LDE T LD
Sbjct: 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175
Query: 178 QIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
++ L + G+T ++ H + A I + G++ LV
Sbjct: 176 SMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEK----GQITGSGKHNELVA 226
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 131 bits (331), Expect = 2e-37
Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 27/236 (11%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
I++ H V+ Y +LK +NL++ + + +G SG GK+TL+N I + +
Sbjct: 17 IDIDH---VSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 72
Query: 74 GTIKLSFRQISDIGY--------MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK- 124
G I + I D + Q+ + +++E TD+++ +K
Sbjct: 73 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG--RPTATDEEVVEAAKM 130
Query: 125 -EILKLLELPPAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
+ P VG LSGGQ++R+S A L+NP +LILDE T LD
Sbjct: 131 ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 190
Query: 178 QIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
II + L ++ +T +I H + A I ++ + G +V L+
Sbjct: 191 SIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIEN----GHIVETGTHRELIA 241
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 127 bits (320), Expect = 3e-36
Identities = 61/231 (26%), Positives = 114/231 (49%), Gaps = 24/231 (10%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IE++ ++ +K + L L+L V + + +LGP+G GKT L I G + D
Sbjct: 1 MIEIES---LSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD 53
Query: 73 AGTIKLSFRQISDI-------GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
+G I L + ++D+ ++ Q +L +++++ + M + D + R +
Sbjct: 54 SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK---RVLD 110
Query: 126 ILKLLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+ L++ + LSGG+Q+R++ A +L+ NPK+L+LDEP LDP + + L
Sbjct: 111 TARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170
Query: 185 KEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ N T++ TH EA+ A I ++ D G+L+ E + E
Sbjct: 171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMD----GKLIQVGKPEEIFE 217
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 127 bits (321), Expect = 3e-36
Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 25/235 (10%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
I ++ + YK + V+L +NL++ + ++ G++G SG GK+TL I +
Sbjct: 2 ITFRN---IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57
Query: 74 GTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
G + + ++ +G + Q+ L SI + + +
Sbjct: 58 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLA 116
Query: 125 EILKLLELPPAKKIV------GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
+ LSGGQ++RI+ A +L++NPK+LI DE T LD
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 179 IIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
+I + ++ G+T+II H + K A I +M G++V + L+
Sbjct: 177 VIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEK----GKIVEQGKHKELLS 226
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 126 bits (317), Expect = 8e-36
Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 28/226 (12%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
+ + L L+ V +I L+GP+G GK+TLL + G T G+I+ + + +
Sbjct: 7 QDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAW 65
Query: 86 --------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AK 136
Y+ Q+ + + + D ++ L L
Sbjct: 66 SATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-----DKTRTELLNDVAGALALDDKLG 120
Query: 137 KIVGALSGGQQRRISFAVSLLH-------NPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+ LSGG+ +R+ A +L +LL+LDEP LD + L +
Sbjct: 121 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ 180
Query: 190 NGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
G I++++H + + AH L++ G+++ E ++
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKG----GKMLASGRREEVLTP 222
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 122 bits (307), Expect = 4e-34
Identities = 49/238 (20%), Positives = 100/238 (42%), Gaps = 27/238 (11%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
++ + V+ AY + +VL+GL + ++ L+GP+G GK+T+ +
Sbjct: 12 VQFQD---VSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 68
Query: 74 GTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
G + L + + + + QE + G S++E YG T ++I +
Sbjct: 69 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIA-YGLTQKPTMEEITAAAV 126
Query: 125 -----EILKLLELPPAKKI---VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
+ L ++ LSGGQ++ ++ A +L+ P +LILD+ T LD
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 177 SQIIWDRLKE-MALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ L E +++++ T ++ + A +I + G + + L+E
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEG----GAIREGGTHQQLME 240
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 109 bits (274), Expect = 2e-29
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 21/219 (9%)
Query: 27 KKIGNHVVLKGLNLNVPENK-IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS- 84
K++GN LN++ + LLGP+G GK+ L I G D G ++L+ I+
Sbjct: 9 KRLGNFR----LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP 64
Query: 85 ------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKK 137
IG++PQ+ AL LS+ Y + + + R +E+ + L + +
Sbjct: 65 LPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDR 122
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIII 196
LSGG+++R++ A +L+ P+LL+LDEP +D ++ + L+ + I+
Sbjct: 123 KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 197 TTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEA 234
TH + EA A + +M + GR+V ++ L A
Sbjct: 183 VTHDLIEAAMLADEVAVMLN----GRIVEKGKLKELFSA 217
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 70.0 bits (170), Expect = 4e-15
Identities = 26/192 (13%), Positives = 45/192 (23%), Gaps = 22/192 (11%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108
+ G G GKTTL+ IV R A R
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFW-----------------TEEVRDPETKKRTG 46
Query: 109 GYMFDMTDDQIETRSKEILKLL--ELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166
+ + SK ++ + K++I+D
Sbjct: 47 FRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106
Query: 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYI--GRLVH 224
E + + M ++ T + I + I
Sbjct: 107 EIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENR 165
Query: 225 HDIVESLVEALE 236
I+E ++ LE
Sbjct: 166 DVILEDILSLLE 177
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 57.5 bits (137), Expect = 4e-10
Identities = 17/66 (25%), Positives = 30/66 (45%)
Query: 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204
G R++ ++ L LLILDEPT LD + + ++ +I+ +H E
Sbjct: 288 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELK 347
Query: 205 KGAHNI 210
A ++
Sbjct: 348 DAADHV 353
Score = 31.3 bits (69), Expect = 0.11
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCI 65
+ I ++G +G GK++LL+ I
Sbjct: 22 KEGINLIIGQNGSGKSSLLDAI 43
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 55.2 bits (131), Expect = 2e-09
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGA 207
R++ ++ L LLILDEPT LD + + ++ +I+ +H E A
Sbjct: 214 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 273
Query: 208 HNI 210
++
Sbjct: 274 DHV 276
Score = 37.8 bits (86), Expect = 9e-04
Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 1/99 (1%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG 87
+ N + E I ++G +G GK++LL+ I+ + + + +G
Sbjct: 7 TVKNFRSHSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVG 65
Query: 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126
+ L E + ++ + +I + +
Sbjct: 66 ARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLV 104
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 45.9 bits (107), Expect = 3e-06
Identities = 10/59 (16%), Positives = 20/59 (33%)
Query: 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210
FA++ +LDE LD Q I ++ I+ + + + +
Sbjct: 347 FAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDAL 405
Score = 29.7 bits (65), Expect = 0.45
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 39 NLNVPENKIYGLLGPSGCGKTTLLNCI 65
+ E+ ++GP+G GK+ +++ I
Sbjct: 19 KVGFGESNFTSIIGPNGSGKSNMMDAI 45
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 35.0 bits (79), Expect = 0.004
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETF 105
++ L GPS GK+T++ C+ R +S P+ + G
Sbjct: 3 RVVVLSGPSAVGKSTVVRCLRERIPNL-------HFSVSATTRAPRPGEVDGVDYHFIDP 55
Query: 106 RYYGYMFDMTDDQ 118
+ + D +
Sbjct: 56 TRFQQLIDQGELL 68
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 35.1 bits (79), Expect = 0.006
Identities = 23/207 (11%), Positives = 51/207 (24%), Gaps = 5/207 (2%)
Query: 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSI 101
+ I G GKT L + + L + I ++ E +
Sbjct: 34 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGK----IIFIDTENTFRPDRLR 89
Query: 102 RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPK 161
R+ + D+ + R+ +EL G + + +
Sbjct: 90 DIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 149
Query: 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221
L+Q++ K + +T + G
Sbjct: 150 DFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGH 209
Query: 222 LVHHDIVESL-VEALEDALRHGNVINK 247
++ H + + LR + +
Sbjct: 210 ILAHASTTRISLRKGRGELRIAKIYDS 236
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 34.4 bits (78), Expect = 0.006
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 3/97 (3%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNT---LDAGTIKLSFRQISDIGYMPQELALHGELSIR 102
++ ++G GKTTL+ V GT+K + H
Sbjct: 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAV 61
Query: 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
T + + + R ++L L ++
Sbjct: 62 ATAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVL 98
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 33.5 bits (75), Expect = 0.013
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 41 NVPENKIYGLLGPSGCGKTTLLNCIV 66
N+P K+ ++G G GK+ L
Sbjct: 1 NLPTYKLV-VVGDGGVGKSALTIQFF 25
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 33.5 bits (75), Expect = 0.016
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAG-TIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108
+LG GKTT+L G + T+ + + + G+ + G+ S+R +R Y
Sbjct: 7 MLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNY 66
Query: 109 GYMFDMTDDQIETRSKEILK 128
D +++ ++ ++
Sbjct: 67 FESTDGLIWVVDSADRQRMQ 86
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 33.5 bits (75), Expect = 0.018
Identities = 11/69 (15%), Positives = 19/69 (27%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
+ GP GKT+LL + + + G + G + +R Y
Sbjct: 8 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYL 67
Query: 110 YMFDMTDDQ 118
Sbjct: 68 KTRAKFVKG 76
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 32.7 bits (73), Expect = 0.031
Identities = 30/158 (18%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD--------AGTIKLSFRQISD 85
VL+ L L K+ LG GKTTLL+ + + + ++ +
Sbjct: 3 VLQFLGLYKKTGKLV-FLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT 61
Query: 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG 145
A + ++ D D + SKE L L V L G
Sbjct: 62 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG 121
Query: 146 QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
+ A+S ++ L T G + + + R
Sbjct: 122 NKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNAR 159
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 32.0 bits (71), Expect = 0.044
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 49 GLLGPSGCGKTTLLNCIVGRN 69
++G GK+TLLN ++G+
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQK 29
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 32.0 bits (71), Expect = 0.051
Identities = 9/66 (13%), Positives = 21/66 (31%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108
G S GK+TL+ + G+ ++ + I + + + G + +
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63
Query: 109 GYMFDM 114
Sbjct: 64 QERIKD 69
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 32.4 bits (73), Expect = 0.051
Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 17/100 (17%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ-----------------ISDIGYMPQ 91
+ G +G GK++ +N + G + G K + D+ +
Sbjct: 60 AVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS 119
Query: 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
+ F Y + ++ + + +I K +
Sbjct: 120 TNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS 159
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 32.0 bits (71), Expect = 0.051
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 49 GLLGPSGCGKTTLLNCIVGRN 69
++G GK+TLLN ++G
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVK 29
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.9 bits (71), Expect = 0.054
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 46 KIYGLLGPSGCGKTTLLNCIV 66
+ SG GKTTLL ++
Sbjct: 3 PLLAFAAWSGTGKTTLLKKLI 23
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 31.8 bits (71), Expect = 0.056
Identities = 12/85 (14%), Positives = 21/85 (24%), Gaps = 9/85 (10%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS---FRQISDIGYMPQELALHGELSIR 102
I L G G GK+T+ + + G + L +
Sbjct: 5 NILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ---- 58
Query: 103 ETFRYYGYMFDMTDDQIETRSKEIL 127
+ D+ + IL
Sbjct: 59 QNRMIMQIAADVAGRYAKEGYFVIL 83
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 31.3 bits (69), Expect = 0.073
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 49 GLLGPSGCGKTTLLNCIVGRN 69
+ G GK++LLN + GR
Sbjct: 5 VIAGRPNAGKSSLLNALAGRE 25
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 31.5 bits (70), Expect = 0.075
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 49 GLLGPSGCGKTTLLNCIVGRN 69
GL+G GK++LL + +
Sbjct: 5 GLVGYPNAGKSSLLAAMTRAH 25
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 31.2 bits (69), Expect = 0.076
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
+LG G GKTT+L +
Sbjct: 10 ILGLDGAGKTTILYRLQVGE 29
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 31.5 bits (70), Expect = 0.076
Identities = 11/70 (15%), Positives = 16/70 (22%), Gaps = 1/70 (1%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDA-GTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108
+G GKT L ++ D +I S L L
Sbjct: 5 FVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQL 64
Query: 109 GYMFDMTDDQ 118
F +
Sbjct: 65 LDRFKSSARA 74
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 31.4 bits (70), Expect = 0.080
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 49 GLLGPSGCGKTTLLNCIVGRN 69
GL+G GK+TLL+ +
Sbjct: 5 GLVGFPSVGKSTLLSVVSSAK 25
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 32.0 bits (72), Expect = 0.084
Identities = 26/240 (10%), Positives = 69/240 (28%), Gaps = 41/240 (17%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS-FRQISDIGYMPQEL 93
LK + N+P+ + + GP GKTTL ++ A + L R ++G +
Sbjct: 144 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQF 203
Query: 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSK--------EILKLLELPPAKKIVGALSGG 145
+ +F+ + L + G++
Sbjct: 204 LV---------------VFEDVKGTGGESRDLPSGQGINNLDNLR-----DYLDGSVKVN 243
Query: 146 QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
+++ + + P ++ ++E +V + R + +
Sbjct: 244 LEKKHLNKRTQIFPPGIVTMNEYSVPK------TLQARFVKQIDFRPKDYLKHCLERSEF 297
Query: 206 GAHNIGLMRDDQYIGRLVHH----DIVESLVEALEDALRHGNVINKVDLVDGRGSIDEVL 261
+ + L+ + + +S+ + + + + L + V
Sbjct: 298 LLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLD--KEFSLSVYQKMKFNVA 355
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 31.1 bits (69), Expect = 0.089
Identities = 8/26 (30%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 41 NVPENKIYGLLGPSGCGKTTLLNCIV 66
++PE ++ G+LG + GK++L++ +
Sbjct: 2 SIPELRL-GVLGDARSGKSSLIHRFL 26
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 31.7 bits (71), Expect = 0.091
Identities = 38/213 (17%), Positives = 78/213 (36%), Gaps = 19/213 (8%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
++G GK+++L IVGR+ L G+ ++ R P L L + +
Sbjct: 29 VVGSQSSGKSSVLENIVGRDFLPRGSGIVTRR--------PLILQLTHLPIADDGSQTQE 80
Query: 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169
+ + ++ + ++ G G + I+ + H L ++D P
Sbjct: 81 WGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLP- 139
Query: 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
G+ + +++ + YI++ N ++ L + D ++
Sbjct: 140 -GITKVPVGDQPTDIEQQIRR-----MVMAYIKKQ----NAIIVAVTPANTDLANSDALQ 189
Query: 230 SLVEALEDALRHGNVINKVDLVDGRGSIDEVLS 262
E + R VI K+DL+D EVL+
Sbjct: 190 LAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLT 222
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 30.9 bits (68), Expect = 0.094
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 49 GLLGPSGCGKTTLLNCIVGRN 69
++G GK+TL N +V +
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKK 24
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 31.5 bits (70), Expect = 0.099
Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 26/238 (10%)
Query: 47 IYGLLGPSGCGKTTLLNCI---------VGRNTLDAGTIKLSFRQISDIGYMPQELALHG 97
I +G +G GKTTL V LD G +L + D+ +
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREF-VTVEEIM 60
Query: 98 ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQR---RISFAV 154
+D ++ +IL+L + I +
Sbjct: 61 REGYGPNG-AIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLM 119
Query: 155 SLLHNPKLLILDEPTVGLDP--ILSQIIWDRLKEMALNGKTIIITT--------HYIEEA 204
L P ++ + +P + P + L ++ L TI
Sbjct: 120 ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHR 179
Query: 205 KGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGNVINKVDLVDGRGSIDEVLS 262
K +I + + + + + + + L V+ + G +++ +
Sbjct: 180 KYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVL-YLSAKTREG-FEDLET 235
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 31.6 bits (71), Expect = 0.10
Identities = 10/47 (21%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI 65
++A+ + ++++ L+ + P+N + ++GP+G GKT + +
Sbjct: 27 AIALRNRWRRMQLQEPLR--HEVTPKNIL--MIGPTGVGKTEIARRL 69
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 30.8 bits (68), Expect = 0.11
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
LG GKTTLL+ +
Sbjct: 5 FLGLDNAGKTTLLHMLKNDR 24
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 30.9 bits (68), Expect = 0.12
Identities = 9/42 (21%), Positives = 12/42 (28%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ 91
LLG G GK+ L G S + +
Sbjct: 6 LLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEE 47
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 30.6 bits (68), Expect = 0.14
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+Y + PSG GK++L+ ++ L
Sbjct: 3 TLYIVSAPSGAGKSSLIQALLKTQPLY 29
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 30.9 bits (68), Expect = 0.14
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 41 NVPENKI--YGLLGPSGCGKTTLLNCIVGRNTL 71
PE + L G S GK++ +N ++ R L
Sbjct: 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNL 49
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 30.8 bits (68), Expect = 0.14
Identities = 26/197 (13%), Positives = 56/197 (28%), Gaps = 4/197 (2%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRE 103
+ + L G +G GK+T + L L FR ++ G ++
Sbjct: 23 DELVTTLSGGNGAGKSTTMAAF--VTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKA 80
Query: 104 TFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLL 163
Y + Q + + +K+ Q +S + L L
Sbjct: 81 GVCYSMLDTINSRHQRVVVGVRLQQ--VAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLN 138
Query: 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
+ L+ + ++ + + + A + D RL+
Sbjct: 139 ERQARVLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLI 198
Query: 224 HHDIVESLVEALEDALR 240
+ + A+ +LR
Sbjct: 199 EASLYGGISSAITRSLR 215
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 30.5 bits (67), Expect = 0.17
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 41 NVPENKIY--GLLGPSGCGKTTLLNCIVGRN 69
++P + G S GK++ LN + +
Sbjct: 10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQK 40
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 30.4 bits (67), Expect = 0.17
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 45 NKIYGLLGPSGCGKTTL 61
+ IY L+G SG GK+ +
Sbjct: 6 HHIYVLMGVSGSGKSAV 22
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 30.3 bits (67), Expect = 0.17
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 50 LLGPSGCGKTTLLNCIV-GRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108
++G GKT LL + +S Q L + + +E +
Sbjct: 14 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL 73
Query: 109 GYMFDMTDDQI 119
+ D
Sbjct: 74 RPLSYPMTDVF 84
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 30.0 bits (66), Expect = 0.18
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
++G GKTT+L +
Sbjct: 5 MVGLDAAGKTTILYKLKL 22
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 30.3 bits (67), Expect = 0.19
Identities = 32/223 (14%), Positives = 57/223 (25%), Gaps = 24/223 (10%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
L GP G GKTTL + I + L S I G + LA
Sbjct: 40 LFGPPGLGKTTLAHVI--AHELGVNLRVTSGPAIEKPGDLAAILA-------NSLEEGDI 90
Query: 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169
D + + +E + + + + L+ P
Sbjct: 91 LFIDEIHRLSRQAEEHLYPAME---------------DFVMDIVIGQGPAARTIRLELPR 135
Query: 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
L ++ ++ G + + EE I +I
Sbjct: 136 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGR 195
Query: 230 SLVEALEDALRHGNVINKVDLVDGRGSIDEVLSRQCTVSVDVD 272
+ A R + V G I + + ++ +D
Sbjct: 196 RSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 238
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 30.1 bits (66), Expect = 0.19
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
L+G G GK+TL N G +
Sbjct: 8 LIGEQGVGKSTLANIFAGVH 27
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 30.0 bits (66), Expect = 0.19
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
+LG SG GKT+L++ V
Sbjct: 7 ILGDSGVGKTSLMHRYVN 24
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 30.0 bits (66), Expect = 0.20
Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 6/115 (5%)
Query: 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRET 104
++ L G S GK+ ++ C+ L + D L + E
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSV--LPEPWLAFG----VDSLIEAMPLKMQSAEGGIEF 56
Query: 105 FRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHN 159
G +E E + + A+ I+ + G S + +
Sbjct: 57 DADGGVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGD 111
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 30.0 bits (66), Expect = 0.20
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
++G GKTT+L
Sbjct: 20 IVGLDNAGKTTILYQFSM 37
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 29.9 bits (66), Expect = 0.21
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 50 LLGPSGCGKTTLLNCIVG-RNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108
LLG GKTTLL + + T + + + G+ + G+ IR +R Y
Sbjct: 21 LLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSY 80
Query: 109 GYMFD 113
D
Sbjct: 81 FENTD 85
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 30.0 bits (66), Expect = 0.21
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
L+G GKTT +N I
Sbjct: 7 LVGLQYSGKTTFVNVIAS 24
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 30.3 bits (67), Expect = 0.21
Identities = 10/65 (15%), Positives = 22/65 (33%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
LLG GK+T + + + T + + + + + G+ S R + +
Sbjct: 7 LLGTGESGKSTFIKQMRIIHGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCF 66
Query: 110 YMFDM 114
Sbjct: 67 ENVTS 71
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 30.5 bits (67), Expect = 0.22
Identities = 22/184 (11%), Positives = 48/184 (26%), Gaps = 6/184 (3%)
Query: 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSI 101
V I L G GK+ L + + + + + Y+ E +
Sbjct: 31 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCL----YIDTEGTFRPVRLV 86
Query: 102 RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPK 161
R+ D ++ R+ L L +S + I +
Sbjct: 87 SIAQRFGLDPDDALNNVAYARAYNADHQLRLL--DAAAQMMSESRFSLIVVDSVMALYRT 144
Query: 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221
L++ + + G +++T + + G G
Sbjct: 145 DFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPTGGN 204
Query: 222 LVHH 225
++ H
Sbjct: 205 IMAH 208
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 30.0 bits (66), Expect = 0.24
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 49 GLLGPSGCGKTTLLNCIVGRN 69
++G GK+TL N I+ +
Sbjct: 12 AIVGRPNVGKSTLFNAILNKE 32
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 29.7 bits (65), Expect = 0.25
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 50 LLGPSGCGKTTLLNCIVGR 68
+LG SG GKT+L+N V +
Sbjct: 7 ILGDSGVGKTSLMNQYVNK 25
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 29.6 bits (65), Expect = 0.26
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83
++G GK+TLLN ++ + I + R +
Sbjct: 5 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDV 38
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 29.9 bits (66), Expect = 0.27
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 6/67 (8%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
LG SG GKTT L F I + + + + + + + +
Sbjct: 10 ALGDSGVGKTTFLYRYTD------NKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 63
Query: 110 YMFDMTD 116
+ D
Sbjct: 64 VHLQLWD 70
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 29.7 bits (65), Expect = 0.27
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV 66
+ L + + G+ G S GKTTL N +
Sbjct: 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLS 43
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 29.9 bits (66), Expect = 0.27
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
L GPSG GK+TLL + +
Sbjct: 5 LSGPSGAGKSTLLKKLFQEH 24
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 29.7 bits (65), Expect = 0.27
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
++G GK++++
Sbjct: 7 VVGNGAVGKSSMIQRYCK 24
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 29.8 bits (66), Expect = 0.28
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
LLG G G+ + N ++ ++
Sbjct: 8 LLGAHGVGRRHIKNTLITKH 27
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 29.2 bits (64), Expect = 0.33
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 50 LLGPSGCGKTTLLNCIV 66
L+G G GKTT + +
Sbjct: 8 LVGDGGTGKTTFVKRHL 24
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 29.2 bits (64), Expect = 0.33
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 43 PENKIYGLLGPSGCGKTTLLNCIVG 67
E K+ ++G G GK+ L ++
Sbjct: 2 TEYKLV-VVGAGGVGKSALTIQLIQ 25
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 29.5 bits (65), Expect = 0.34
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
++G +G GK+ LL+ +
Sbjct: 10 VIGNAGTGKSCLLHQFIE 27
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 29.7 bits (65), Expect = 0.34
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95
+LG GK++++ + N L+ I L R+ + Y+ + L
Sbjct: 34 VLGLRRTGKSSIIKIGI--NELNLPYIYLDLRKFEERNYISYKDFL 77
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 29.5 bits (65), Expect = 0.35
Identities = 11/67 (16%), Positives = 18/67 (26%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
L GP GKT L I + I + I + ++
Sbjct: 45 LEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCV 104
Query: 110 YMFDMTD 116
+ D+
Sbjct: 105 VVDDIER 111
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 29.8 bits (66), Expect = 0.35
Identities = 9/47 (19%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI 65
++A+ + ++++ L+ + K ++GP+G GKT + +
Sbjct: 27 AIALRNRWRRMQ----LQEPLRHEVTPKNILMIGPTGVGKTEIARRL 69
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 29.3 bits (64), Expect = 0.38
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 50 LLGPSGCGKTTLLNCIVGR 68
++G G GK+ L +
Sbjct: 11 VVGGGGVGKSALTIQFIQS 29
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 29.7 bits (65), Expect = 0.39
Identities = 21/76 (27%), Positives = 30/76 (39%)
Query: 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRET 104
N IYG +G G GKTTL V R + A L+ +Q + L L +R+T
Sbjct: 46 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQT 105
Query: 105 FRYYGYMFDMTDDQIE 120
D ++
Sbjct: 106 GYPIQVRGAPALDILK 121
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 29.0 bits (64), Expect = 0.40
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
++G SG GK++LL
Sbjct: 12 IIGESGVGKSSLLLRFTD 29
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 29.3 bits (65), Expect = 0.42
Identities = 12/117 (10%), Positives = 28/117 (23%), Gaps = 16/117 (13%)
Query: 50 LLGPSGCGKTTLLNCI--------VGRN--TLDAGTIKLSFRQISDIGYMPQELALHGEL 99
LLG GK+T++ + G + + ++
Sbjct: 11 LLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFND 70
Query: 100 SIRETFRYYGYMFDMTDDQIETRS------KEILKLLELPPAKKIVGALSGGQQRRI 150
F ++M + + + + I L +Q +
Sbjct: 71 VTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 127
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 29.7 bits (65), Expect = 0.42
Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 10/112 (8%)
Query: 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG----------YMPQ 91
+ I + G G GKT L + + L L+ I + Q
Sbjct: 33 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 92
Query: 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALS 143
L + ++ + + + ++ +I +LL K++ S
Sbjct: 93 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 144
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.9 bits (63), Expect = 0.42
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
+LG GK++L V
Sbjct: 9 ILGYRSVGKSSLTIQFVE 26
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 29.1 bits (64), Expect = 0.42
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 50 LLGPSGCGKTTLLNCIVGRN 69
+ GPSG GK+TLL +
Sbjct: 6 ISGPSGTGKSTLLKKLFAEY 25
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 29.4 bits (65), Expect = 0.43
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTIK-LSFRQISDI--GYMPQELALHGELSIRETF 105
G+ G G GK+T L + + ++ S + G + + +L+ E
Sbjct: 58 GVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAA 117
Query: 106 RYYGYMFDMTDDQIETRSKEILKLLE 131
R++E++ L E
Sbjct: 118 FIRPVPSSGHLGGASQRARELMLLCE 143
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 29.1 bits (64), Expect = 0.43
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
++G S GKT+ L
Sbjct: 10 IIGNSSVGKTSFLFRYAD 27
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 28.8 bits (63), Expect = 0.46
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
++G S GKT L
Sbjct: 7 VIGDSNVGKTCLTYRFCA 24
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 29.2 bits (64), Expect = 0.46
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGR 68
+ L GP G GKTTL++
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEV 24
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 28.8 bits (63), Expect = 0.47
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 50 LLGPSGCGKTTLLNCIV 66
++G CGKT LL
Sbjct: 7 IVGDGACGKTCLLIVNS 23
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 28.8 bits (63), Expect = 0.47
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
LLG GKT+L+
Sbjct: 8 LLGEGCVGKTSLVLRYCE 25
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.8 bits (63), Expect = 0.47
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 50 LLGPSGCGKTTLLNCIV 66
LLG +G GK++++ V
Sbjct: 9 LLGDTGVGKSSIMWRFV 25
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.1 bits (64), Expect = 0.47
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 50 LLGPSGCGKTTLLNCIV 66
L+G SG GKT LL
Sbjct: 11 LVGDSGVGKTCLLVRFK 27
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 28.8 bits (63), Expect = 0.48
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 50 LLGPSGCGKTTLLNCIV 66
+LG GKTT+L +
Sbjct: 17 MLGLDAAGKTTILYKLK 33
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.0 bits (64), Expect = 0.48
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
L+G +G GKT L+
Sbjct: 10 LIGNAGVGKTCLVRRFTQ 27
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 29.2 bits (64), Expect = 0.49
Identities = 32/221 (14%), Positives = 58/221 (26%), Gaps = 39/221 (17%)
Query: 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIR 102
+ + +LG G GK T +V SF +S G + +
Sbjct: 6 DQVSVIFVLGGPGAGKGTQCEKLVK---------DYSFVHLS-AGDLLRAEQGRAGSQYG 55
Query: 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKL 162
E + + +I + K L G R++ A+S
Sbjct: 56 ELIKNCIKEGQIVPQEITLALLRNAISDNVKANKH--KFLIDGFPRKMDQAISFER---- 109
Query: 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRL 222
I++ + I+ +RL E I
Sbjct: 110 DIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESI----------------KKRFN 153
Query: 223 VHHDIVESLVEALEDALRHGNVINKVDLVDGRGSIDEVLSR 263
+ ++E E +KV V S+++V
Sbjct: 154 TFKETSMPVIEYFETK-------SKVVRVRCDRSVEDVYKD 187
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 28.8 bits (63), Expect = 0.50
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 45 NKIYGLLGPSGCGKTTLLNCIVGR 68
K+Y + GP+G GK+T + +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQ 25
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 29.0 bits (64), Expect = 0.51
Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 9/90 (10%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
++G G GK++ +N I+G + + + + L
Sbjct: 37 VMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTL--------NIIDTP 88
Query: 110 YMFDMTDDQIETRSKEILKLLELPPAKKIV 139
+ + + I L ++
Sbjct: 89 GLIE-GGYINDMALNIIKSFLLDKTIDVLL 117
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.5 bits (62), Expect = 0.51
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69
KI +G G GK+T + +N
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKN 26
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 28.8 bits (63), Expect = 0.51
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
LG GKT+L+ +
Sbjct: 5 FLGEQSVGKTSLITRFMY 22
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 28.8 bits (63), Expect = 0.52
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67
+ L + E +I +LG G GKTT+L +
Sbjct: 7 MFDKLWGSNKELRIL-ILGLDGAGKTTILYRLQI 39
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 28.7 bits (63), Expect = 0.52
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
L+G SG GK+ LL+
Sbjct: 9 LIGDSGVGKSNLLSRFTR 26
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 28.7 bits (63), Expect = 0.53
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 50 LLGPSGCGKTTLLNCIV 66
++G G GK+ L +
Sbjct: 9 MVGSGGVGKSALTLQFM 25
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.8 bits (63), Expect = 0.53
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
+ G G GK++L+ V
Sbjct: 7 VFGAGGVGKSSLVLRFVK 24
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.6 bits (63), Expect = 0.53
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
L+G SG GK+ LL V
Sbjct: 7 LIGDSGVGKSCLLVRFVE 24
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 28.7 bits (63), Expect = 0.55
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 50 LLGPSGCGKTTLLNCIV---GRNTLDAGT-IKLSFRQISDIGYMPQELALHGELSIRETF 105
L+G G GK T IV G + G + + ++ + +G ++ G+L E
Sbjct: 5 LMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVT 64
Query: 106 RYYGYMFDMTDDQIE 120
DD
Sbjct: 65 IGIVRERLSKDDCQN 79
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 28.7 bits (63), Expect = 0.56
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 50 LLGPSGCGKTTLLNCIV 66
++G G GK+ LL+
Sbjct: 9 IIGDMGVGKSCLLHQFT 25
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 28.9 bits (63), Expect = 0.56
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
LLG + GK++++ V
Sbjct: 8 LLGEAAVGKSSIVLRFVS 25
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 28.9 bits (63), Expect = 0.56
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 50 LLGPSGCGKTTLLNCIV 66
++G S CGKT LL+
Sbjct: 7 VVGDSQCGKTALLHVFA 23
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 28.8 bits (63), Expect = 0.57
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 45 NKIYGLLGPSGCGKTTLLNCIV 66
NK+ + G G G TT +
Sbjct: 1 NKVVVVTGVPGVGSTTSSQLAM 22
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 29.1 bits (64), Expect = 0.59
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLL--GPSGCGKTTLLNCIVG 67
+G + L L + I G+L G G GK+T + +
Sbjct: 10 VGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAA 50
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 0.64
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 50 LLGPSGCGKTTLLNCIV 66
LLG S GK++L+ V
Sbjct: 11 LLGESAVGKSSLVLRFV 27
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 28.4 bits (62), Expect = 0.65
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 50 LLGPSGCGKTTLLNCIV 66
LLG G GK++L+N V
Sbjct: 11 LLGDGGVGKSSLMNRYV 27
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.4 bits (62), Expect = 0.67
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 50 LLGPSGCGKTTLLNCIV 66
+ G +G GK+ L+ +
Sbjct: 7 IFGRAGVGKSALVVRFL 23
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.3 bits (62), Expect = 0.68
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
++G +G GK+ LL
Sbjct: 8 IIGDTGVGKSCLLLQFTD 25
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.5 bits (62), Expect = 0.68
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 50 LLGPSGCGKTTLLNCIVGR 68
++G G GK+ L +
Sbjct: 10 VVGGGGVGKSALTIQFIQS 28
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 28.4 bits (62), Expect = 0.73
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ 91
LLG GK+T++ + + G ++ F M
Sbjct: 7 LLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFD 48
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 28.2 bits (62), Expect = 0.74
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
L+G SG GKT +L
Sbjct: 11 LIGDSGVGKTCVLFRFSE 28
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 28.3 bits (62), Expect = 0.74
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
L+G SG GK+ LL
Sbjct: 11 LIGNSGVGKSCLLLRFSD 28
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 28.3 bits (62), Expect = 0.74
Identities = 26/215 (12%), Positives = 49/215 (22%), Gaps = 53/215 (24%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
+ G GK T I K IS + R
Sbjct: 8 ISGAPASGKGTQCELIKT---------KYQLAHIS----------------AGDLLRAEI 42
Query: 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169
+ + ++ G + + E
Sbjct: 43 AAGSENGKRAKEFMEK------------------GQLVPDEIVVNMVKERLRQPDAQENG 84
Query: 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRL-VHHDIV 228
LD E I +E + +++ RL ++ +
Sbjct: 85 WLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVFDDTEEKVKLRLETYYQNI 144
Query: 229 ESLVEALEDALRHGNVINKVDLVDGRGSIDEVLSR 263
ESL+ E+ + V G ++D V ++
Sbjct: 145 ESLLSTYENIIVK---------VQGDATVDAVFAK 170
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 28.9 bits (63), Expect = 0.80
Identities = 8/62 (12%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 181 WDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALR 240
W ++ + A+N ++ + A +G+M G ++ + +++L+
Sbjct: 327 WWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIM------GECSTVQKIQFYLYGFKESLK 380
Query: 241 HG 242
Sbjct: 381 AT 382
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 28.4 bits (62), Expect = 0.85
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 50 LLGPSGCGKTTLLNCIV 66
++G GKT LL
Sbjct: 8 VVGDGAVGKTCLLISYT 24
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 28.1 bits (61), Expect = 0.86
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 50 LLGPSGCGKTTLLNCIV 66
++G GKT LL
Sbjct: 10 VVGDGAVGKTCLLISYT 26
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 28.6 bits (63), Expect = 0.87
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 47 IYGLLGPSGCGKTTLLNCIV 66
GP G GK+ I
Sbjct: 29 FIFFSGPQGSGKSFTSIQIY 48
>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly
(Drosophila lebanonensis) [TaxId: 7225]}
Length = 254
Score = 28.5 bits (63), Expect = 0.95
Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 18/111 (16%)
Query: 187 MALNGKTIIIT--THYIEEA-------KGAHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
M L K +I I + N ++ + +L E
Sbjct: 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV---------ENPTALAELKAI 51
Query: 238 ALRHGNVINKVDLVDGRGSIDEVLSRQCTVSVDVDRPAINEGDYVWTQLEK 288
+ + D+ ++L + VD G Q+E+
Sbjct: 52 NPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIER 102
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.0 bits (61), Expect = 0.96
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 50 LLGPSGCGKTTLLNCIV 66
+LG G GK+ L V
Sbjct: 8 VLGSGGVGKSALTVQFV 24
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.0 bits (61), Expect = 0.97
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 50 LLGPSGCGKTTLLNCIVG 67
+LG G GK+ L V
Sbjct: 8 VLGSGGVGKSALTVQFVT 25
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 28.2 bits (61), Expect = 1.00
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 50 LLGPSGCGKTTLLNCI 65
L GP G GKTT + +
Sbjct: 57 LYGPPGIGKTTAAHLV 72
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 28.0 bits (61), Expect = 1.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 47 IYGLLGPSGCGKTTLLNCIV 66
+ G+ G + GK+++ IV
Sbjct: 4 LIGVSGGTASGKSSVCAKIV 23
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 28.1 bits (61), Expect = 1.1
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 43 PENKIYGLLGPSGCGKTTLLNCI 65
+++ ++GP+G GK+ +++ I
Sbjct: 22 FSDRVTAIVGPNGSGKSNIIDAI 44
Score = 25.8 bits (55), Expect = 6.1
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
+ +LDE LD ++ LKE + + + I+IT
Sbjct: 239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVIT 279
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain
{Escherichia coli [TaxId: 562]}
Length = 197
Score = 27.7 bits (60), Expect = 1.2
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 6/127 (4%)
Query: 115 TDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
I+ I + + K++ LSGG S LLH L V
Sbjct: 3 PAKIIDDAVARIREQVG---DDKVILGLSGGVDS--SVTAMLLHRAIGKNLTCVFVDNGL 57
Query: 175 ILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
+ L + + I E+ + G + + + EA
Sbjct: 58 LRLNEAEQVLDMFGDHFG-LNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEA 116
Query: 235 LEDALRH 241
L+
Sbjct: 117 LKLEDVK 123
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 27.6 bits (60), Expect = 1.2
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 11/72 (15%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--DIGYMPQELALHGELSIRETFRY 107
L+GP G GK T + + ++ D+ L ++
Sbjct: 7 LIGPPGAGKGTQAPNLQE---------RFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQ 57
Query: 108 YGYMFDMTDDQI 119
G + D +
Sbjct: 58 GGLVSDDIMVNM 69
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 28.0 bits (61), Expect = 1.3
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 133 PPAKKI--VGALSGGQQRRIS----FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
P K + + A+SGG++ + FA+ + DE LD + + D +KE
Sbjct: 214 PAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKE 273
Query: 187 MALNGKTIIITTHYIEEAKGAHNIGL-MRDDQYIGRLVHHDIVESLVEALEDALRH 241
+ + I+IT + A IG+ MRD + ++V + E ++ LE+ +
Sbjct: 274 SSKESQFIVITLRDVMMANADKIIGVSMRDG--VSKVVSLSL-EKAMKILEEIRKK 326
Score = 27.2 bits (59), Expect = 2.7
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCI 65
++G +G GK+ + + I
Sbjct: 25 SKGFTAIVGANGSGKSNIGDAI 46
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 28.0 bits (61), Expect = 1.4
Identities = 23/221 (10%), Positives = 65/221 (29%), Gaps = 12/221 (5%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLS-FRQISDIGYMPQELALHGELSIRETFRYY 108
L G G GKT+L + I + I F+Q + + L+ + ++ Y
Sbjct: 37 LGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ--HPNFDELVKLYEKDVVKHVTPYS 94
Query: 109 GYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
M + ++ + ++ + + Q + + ++ PK+
Sbjct: 95 NRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGT 154
Query: 169 TVGLDPILSQI-IWDRLKEMALNGKTIIITTHYIEE---AKGAHNIGLMRDDQYIGRLVH 224
+ + + + R + + +E +I L +
Sbjct: 155 IERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKL-YSS 213
Query: 225 HDIVESLVEALEDALRHGNVINKVDLVDGRGSIDEVLSRQC 265
+ + + KV + + +++ + +
Sbjct: 214 LETPSISPKETLEKEL----NRKVSGKEIQPTLERIEQKMV 250
>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 28.2 bits (61), Expect = 1.5
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 182 DRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRH 241
+ ++ I I IGL+ G + V+ + EAL AL+H
Sbjct: 330 RDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLL------GCNATRENVDRVTEALRAALQH 383
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 27.5 bits (61), Expect = 1.5
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ K L+GP G GKT L + G + T S
Sbjct: 36 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 76
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.7 bits (60), Expect = 1.5
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGR 68
KI + G G GK+T+L +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEI 24
>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase
{Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}
Length = 377
Score = 27.8 bits (60), Expect = 1.6
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 182 DRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALR 240
+ LN I + E A +GLM G + V+ L+ ALE LR
Sbjct: 325 KAVARRLLNEHNIEVGGGLGELAGKVWRVGLM------GFNSRKESVDQLIPALEQVLR 377
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 27.3 bits (59), Expect = 1.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 46 KIYGLLGPSGCGKTTLLN 63
K +LG GK+ L+N
Sbjct: 8 KTVAILGGESSGKSVLVN 25
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 27.3 bits (59), Expect = 2.1
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRET 104
+ I +LG GKTTLL+ I G A + + IG + + +
Sbjct: 5 SPIVSVLGHVDHGKTTLLDHIRG----SAVASREAGGITQHIGATEIPMDVIEGICGDFL 60
Query: 105 FRYYGYMFDMTDDQIETRSKE 125
++ I+T E
Sbjct: 61 KKFSIRETLPGLFFIDTPGHE 81
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 27.5 bits (60), Expect = 2.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 49 GLLGPSGCGKTTLLNCIV 66
G+ G G GK+T ++ +
Sbjct: 55 GITGVPGVGKSTTIDALG 72
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 27.2 bits (59), Expect = 2.2
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAGTIK----LSFRQISDIGYMPQELALHGELSIRETFRY 107
G G GKTT N +V TL+ I+ + + + L L + E
Sbjct: 9 GLEGAGKTTARNVVV--ETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITD 66
Query: 108 YGYMFDMTDDQIETRSKEILKLLE 131
+ +++ I L
Sbjct: 67 KAEVLMFYAARVQLVETVIKPALA 90
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 27.1 bits (58), Expect = 2.2
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 29 IGNHVVLKGLNLNVPENKI---YGLLGPSGCGKTTLLNCI 65
N + L + + L GP+G GK T +
Sbjct: 14 SHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMAL 53
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 27.0 bits (59), Expect = 2.3
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRE 103
+ KI + G SG GK++LLN I L + ++ Q L
Sbjct: 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG----- 148
Query: 104 TFRYYGYMFDM 114
GY+ D
Sbjct: 149 -----GYVVDT 154
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 27.2 bits (60), Expect = 2.4
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 47 IYGLLGPSGCGKTTLLNCIV 66
I + G SG G +T+ +
Sbjct: 6 IISVTGSSGAGTSTVKHTFD 25
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 27.0 bits (58), Expect = 2.5
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 29 IGNHVVLKGLNLNVPENKI--YGLLGPSGCGKTTLLNCI 65
+ L + + GP G GKT+ + +
Sbjct: 15 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILAL 53
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 27.1 bits (60), Expect = 2.6
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 38 LNLNVPENKIYGLLG--PSGCGKTTL 61
L + PE + L PS CGKT L
Sbjct: 9 LGITNPEGEKKYLAAAFPSACGKTNL 34
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 26.8 bits (58), Expect = 2.6
Identities = 33/227 (14%), Positives = 62/227 (27%), Gaps = 41/227 (18%)
Query: 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELS 100
+ ++KI ++G G GK T IV K + +S + E++
Sbjct: 4 KLKKSKIIFVVGGPGSGKGTQCEKIVQ---------KYGYTHLSTGDLLRAEVSSGSARG 54
Query: 101 IRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNP 160
+ E + + V G V
Sbjct: 55 KMLSEIMEKGQLVP---------LETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEF 105
Query: 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIG 220
+ I + + + RL + + I++ R + Y
Sbjct: 106 ERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKK----------RLETY-- 153
Query: 221 RLVHHDIVESLVEALEDALRHGNVINKVDLVDGRGSIDEVLSRQCTV 267
+ E ++ E V V+ GS+D+V S+ CT
Sbjct: 154 ----YKATEPVIAFYEKR-------GIVRKVNAEGSVDDVFSQVCTH 189
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 26.9 bits (58), Expect = 2.7
Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 5/151 (3%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
L+ P G GK+ L + + +++ + Y+P E +I R +
Sbjct: 34 LVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE---DPPTAIHH--RLHA 88
Query: 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169
++ ++ + + +L + I+ +R + L+ L
Sbjct: 89 LGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEE 148
Query: 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
++Q+I A G +I+ H
Sbjct: 149 ENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 26.8 bits (58), Expect = 2.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 50 LLGPSGCGKTTLLN 63
LLG GK+T L
Sbjct: 7 LLGAGESGKSTFLK 20
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 26.4 bits (57), Expect = 3.1
Identities = 10/95 (10%), Positives = 19/95 (20%)
Query: 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGEL 99
L P ++ +G G GK+T + + + L +
Sbjct: 9 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRV 68
Query: 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP 134
I T +
Sbjct: 69 VIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATI 103
>d1sr9a3 d.270.1.1 (A:492-643) 2-isopropylmalate synthase LeuA,
allosteric (dimerisation) domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 152
Score = 26.3 bits (57), Expect = 3.5
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 191 GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239
+ I + G H + G + I + + A+ A+
Sbjct: 100 SDPVTIASPAQPGEAGRHASDPVTSKTVWGVGIAPSITTASLRAVVSAV 148
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 26.7 bits (57), Expect = 3.6
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 42 VPENKIYGLLGPSGCGKTTLLNCIV 66
+ I + G GKT + + +
Sbjct: 20 IETGSITEMFGEFRTGKTQICHTLA 44
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.7 bits (57), Expect = 3.6
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 50 LLGPSGCGKTTLLNCI 65
LLG G GKT L +
Sbjct: 48 LLGRPGTGKTVTLRKL 63
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 26.6 bits (57), Expect = 3.7
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 88 YMPQELALHGEL--SIRETFRYYGYMFDMTDDQIETRSKEILKLLELP 133
+ P+++ + + + E +G+ +I+ S E L L +
Sbjct: 13 FYPEDMDVEKFIFKTAEEAAEAFGF------RRIDFPSLEYLDLYRIK 54
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.6 bits (58), Expect = 3.9
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 49 GLLGPSGCGKTTLLNCIVGRN 69
++G GK+ L+N + G+
Sbjct: 36 AIVGLYRTGKSYLMNKLAGKK 56
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 26.2 bits (56), Expect = 3.9
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 50 LLGPSGCGKTTL 61
L+GP G GK+T+
Sbjct: 7 LVGPMGAGKSTI 18
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 25.9 bits (56), Expect = 4.0
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 205 KGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDA 238
+I + + + +G D++E+ LE A
Sbjct: 99 HRIKHILIEEEGKIVGIFTLSDLLEASRRRLETA 132
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 26.5 bits (58), Expect = 4.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 44 ENKIYGLLGPSGCGKTTL 61
+ + G SG GKTTL
Sbjct: 13 QGDVTVFFGLSGTGKTTL 30
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 26.3 bits (58), Expect = 4.1
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
L K ++GP G GKT L I G + TI S
Sbjct: 39 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS 79
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 26.4 bits (57), Expect = 4.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 47 IYGLLGPSGCGKTTLLNCIV 66
+ L G G GKTTLL I+
Sbjct: 5 VTLLTGFLGAGKTTLLRHIL 24
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 26.2 bits (56), Expect = 4.3
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 42 VPENKIYGLLGPSGCGKTTLLNCIV 66
+ + G G GKT +++
Sbjct: 31 LESQSVTEFAGVFGSGKTQIMHQSC 55
>d1ejba_ c.16.1.1 (A:) Lumazine synthase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 168
Score = 25.7 bits (56), Expect = 4.5
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 224 HHDIVESLVE-ALEDALRHGNVINKVDLVDGRGSID 258
+ I+++LV+ A+E G N + + GS +
Sbjct: 27 NRVIIDALVKGAIERMASLGVEENNIIIETVPGSYE 62
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 26.2 bits (57), Expect = 4.5
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 39 NLNVPENK--IYGLLGPSGCGKTT 60
LNVP + ++G +G GKTT
Sbjct: 3 KLNVPPEPPFVIMVVGVNGTGKTT 26
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 26.1 bits (57), Expect = 4.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 50 LLGPSGCGKTTL 61
G SG GKTTL
Sbjct: 19 FFGLSGTGKTTL 30
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 26.1 bits (57), Expect = 5.0
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 50 LLGPSGCGKTTL 61
G SG GKTTL
Sbjct: 19 FFGLSGTGKTTL 30
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 25.7 bits (55), Expect = 5.1
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 50 LLGPSGCGKTTL 61
L+G G GK+T+
Sbjct: 6 LVGLPGSGKSTI 17
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 25.8 bits (56), Expect = 5.2
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 24 SAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80
+ + G L L+ + + L G G GKTTL ++ ++
Sbjct: 12 FSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTY 68
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 25.7 bits (55), Expect = 5.2
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 50 LLGPSGCGKTTL 61
++G GCG TT+
Sbjct: 7 MVGARGCGMTTV 18
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 25.7 bits (55), Expect = 5.4
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 50 LLGPSGCGKTTL 61
+ G G GKT++
Sbjct: 10 ITGTPGTGKTSM 21
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 25.8 bits (56), Expect = 6.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLL 62
LN+ + ++G +G GKTT +
Sbjct: 2 LNVEGKAPFVILMVGVNGVGKTTTI 26
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 25.4 bits (54), Expect = 6.4
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 50 LLGPSGCGKTTLLNCI 65
L G GK + +
Sbjct: 11 LTGYMNSGKDAIARAL 26
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId:
235]}
Length = 148
Score = 25.3 bits (55), Expect = 6.8
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 224 HHDIVESLVE-ALEDALRHGNVINKVDLVDGRGSIDEVLSRQCT 266
H DIV+ + + + +V++ D G+ + L +
Sbjct: 13 HADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTL 56
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 25.9 bits (56), Expect = 6.8
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 104 TFRYYGYMFDMTDDQIETRS--KEILKLLELPPAKKI--VGALSGG 145
++ ++G +M D++ T + + L K + VG+ +G
Sbjct: 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGI 46
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 25.7 bits (56), Expect = 7.1
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
G G GK+T + + G+ L F
Sbjct: 13 GVYGIGKSTTGRVMA--SAASGGSPTLYFP 40
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 25.5 bits (54), Expect = 7.2
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 48 YGLLGPSGCGKTTLLNCI 65
+ G G L+ +
Sbjct: 27 LLIQALPGMGDDALIYAL 44
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 25.3 bits (54), Expect = 7.3
Identities = 23/214 (10%), Positives = 55/214 (25%), Gaps = 40/214 (18%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109
+LG G GK T IV + +S + QE +
Sbjct: 11 VLGGPGSGKGTQCANIVR---------DFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN 61
Query: 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169
+ ++ I K + + + +D
Sbjct: 62 GEIVPSIVTVKLLKNAIDA----NQGKNFLVDGFPRNEENNNS----WEENMKDFVDTKF 113
Query: 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
V +++ RL + + I++ R + + + +
Sbjct: 114 VLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKK----------RFNTF------NVQTK 157
Query: 230 SLVEALEDALRHGNVINKVDLVDGRGSIDEVLSR 263
+++ +KV ++ ++EV +
Sbjct: 158 LVIDHYNKF-------DKVKIIPANRDVNEVYND 184
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 25.7 bits (56), Expect = 7.5
Identities = 20/171 (11%), Positives = 47/171 (27%), Gaps = 39/171 (22%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111
G G GKTT + + ++ I E Y+ +
Sbjct: 12 GAYGIGKTTAAEEFL--HHFAITPNRILL--------------------IGEPLSYWRNL 49
Query: 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171
++ + + +++ G +S +R++ L I+
Sbjct: 50 AG----------EDAICGIYGTQTRRLNGDVSPEDAQRLTAHFQSLFCSPHAIMHA---K 96
Query: 172 LDPILSQIIWDRLKEMALNGKTIIITTHYIEE----AKGAHNIGLMRDDQY 218
+ ++ D ++ K ++ H I + +G M
Sbjct: 97 ISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAAL 147
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 25.4 bits (54), Expect = 7.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 50 LLGPSGCGKTTLLNCI 65
L G SG GKTT+ +
Sbjct: 24 LTGLSGAGKTTVSMAL 39
>d2ga9d1 e.69.1.1 (D:12-479) Poly(A) polymerase catalytic subunit,
PAPL {Vaccinia virus [TaxId: 10245]}
Length = 468
Score = 25.9 bits (57), Expect = 7.6
Identities = 8/44 (18%), Positives = 22/44 (50%)
Query: 200 YIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGN 243
+ + N+ ++ + +GR +V+++ + +E+ LR N
Sbjct: 126 LARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRHN 169
>d3cx5g1 f.27.1.1 (G:3-127) 14 kDa protein of cytochrome bc1 complex
(Ubiquinol-cytochrome c reductase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 125
Score = 24.7 bits (54), Expect = 7.6
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 14/92 (15%)
Query: 105 FRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLI 164
++ G F DD I + + L P + + RI A LL
Sbjct: 36 YKKLGLKF---DDLIAEENPIMQTALRRLPEDESY-----ARAYRIIRAHQTELTHHLLP 87
Query: 165 LDEPTVG------LDPILSQIIWDRLKEMALN 190
+E L P + + ++ L+
Sbjct: 88 RNEWIKAQEDVPYLLPYILEAEAAAKEKDELD 119
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 25.3 bits (54), Expect = 7.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 50 LLGPSGCGKTTL 61
L G G GKTTL
Sbjct: 9 LTGTPGVGKTTL 20
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.3 bits (54), Expect = 8.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 42 VPENKIYGLLGPSGCGKTTLLNCIV 66
++ I G +G GKT L++ V
Sbjct: 23 FFKDSIILATGATGTGKTLLVSRFV 47
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 25.3 bits (54), Expect = 8.7
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGR 68
K+ L G GK T + I+
Sbjct: 2 KLIFLSGVKRSGKDTTADFIMSN 24
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 25.7 bits (55), Expect = 8.9
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAG 74
+ G +G GK+ LL + L G
Sbjct: 55 VNGATGTGKSVLLRELA-YTGLLRG 78
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 25.3 bits (54), Expect = 9.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 47 IYGLLGPSGCGKTTLLNCI 65
I G+ G G GK+T+ +
Sbjct: 5 IIGITGNIGSGKSTVAALL 23
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.4 bits (54), Expect = 9.4
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 10/108 (9%)
Query: 42 VPENKIYGLLGPSGCGKTTLL------NCIVGRNTLDAGTIKLSFRQI----SDIGYMPQ 91
+P + + G SG GKT I T + + + I G+
Sbjct: 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA 82
Query: 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
+L G+L I + + + + I ++ A+++
Sbjct: 83 KLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVS 130
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 24.9 bits (53), Expect = 9.6
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 50 LLGPSGCGKTTL 61
+G G GK+TL
Sbjct: 5 FIGFMGSGKSTL 16
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 24.9 bits (53), Expect = 9.9
Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 1/72 (1%)
Query: 52 GPSGCGKTTLLNCIVGR-NTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110
G GK+T +V L F + S L + + + + +
Sbjct: 10 GVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLF 69
Query: 111 MFDMTDDQIETR 122
+ + +
Sbjct: 70 SANRWEQVPLIK 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.402
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,131,276
Number of extensions: 55082
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 235
Length of query: 291
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 206
Effective length of database: 1,240,546
Effective search space: 255552476
Effective search space used: 255552476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)