BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6613
(510 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav1.2 I-Ii Linker
Length = 337
Score = 369 bits (946), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/323 (60%), Positives = 233/323 (72%), Gaps = 39/323 (12%)
Query: 11 SQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGY 69
S+PS SD+SL+ QA +QLEKA+ K VAFAVRTNV Y + +DD PV G
Sbjct: 1 SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGM 60
Query: 70 AVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-ARNPKLYSS 128
A+SF+ +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN+RLQ Q A+ KL+S
Sbjct: 61 AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSK 120
Query: 129 --------KTSSTSNLGALSSDAP----SP------------------------GMIIIT 152
KT T + S P P G I IT
Sbjct: 121 EKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT 180
Query: 153 RVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTI 212
RVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVVLD DTI
Sbjct: 181 RVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVVLDADTI 239
Query: 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD 272
NHP+QL+KT+L+P +VY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQCP E+FD
Sbjct: 240 NHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFD 299
Query: 273 VILDENQLEDACEHIAEYLEAYW 295
VILDENQLEDACEH+A+YLEAYW
Sbjct: 300 VILDENQLEDACEHLADYLEAYW 322
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/98 (85%), Positives = 93/98 (94%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRI ITRVTADISLAKRS++
Sbjct: 135 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVL 194
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
+NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQ+
Sbjct: 195 NNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQL 231
>pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav2.2 I-Ii Linker
Length = 339
Score = 368 bits (944), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/323 (60%), Positives = 233/323 (72%), Gaps = 39/323 (12%)
Query: 11 SQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGY 69
S+PS SD+SL+ QA +QLEKA+ K VAFAVRTNV Y + +DD PV G
Sbjct: 3 SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGM 62
Query: 70 AVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-ARNPKLYSS 128
A+SF+ +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN+RLQ Q A+ KL+S
Sbjct: 63 AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSK 122
Query: 129 --------KTSSTSNLGALSSDAP----SP------------------------GMIIIT 152
KT T + S P P G I IT
Sbjct: 123 EKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT 182
Query: 153 RVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTI 212
RVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVVLD DTI
Sbjct: 183 RVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVVLDADTI 241
Query: 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD 272
NHP+QL+KT+L+P +VY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQCP E+FD
Sbjct: 242 NHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFD 301
Query: 273 VILDENQLEDACEHIAEYLEAYW 295
VILDENQLEDACEH+A+YLEAYW
Sbjct: 302 VILDENQLEDACEHLADYLEAYW 324
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/98 (85%), Positives = 93/98 (94%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRI ITRVTADISLAKRS++
Sbjct: 137 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVL 196
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
+NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQ+
Sbjct: 197 NNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQL 233
>pdb|1T3L|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core In Complex With
Alpha1 Interaction Domain
pdb|1T3S|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core
Length = 337
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/323 (60%), Positives = 232/323 (71%), Gaps = 39/323 (12%)
Query: 11 SQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSIDDDSPVHGY 69
S+PS SD+SL+ QA +QLEKA+ K VAFAVRTNV Y + +DD PV G
Sbjct: 1 SRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGM 60
Query: 70 AVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-ARNPKLYSS 128
A+SF+ +FLH+KEK++++WWIGRLVKEG E GFIPS VKLEN+RLQ Q A+ KL+S
Sbjct: 61 AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSRVKLENMRLQHEQRAKEFKLHSK 120
Query: 129 --------KTSSTSNLGALSSDAP----SP------------------------GMIIIT 152
KT T + S P P G I IT
Sbjct: 121 EKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT 180
Query: 153 RVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVVLDCDTI 212
RVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVVLD DTI
Sbjct: 181 RVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVVLDADTI 239
Query: 213 NHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQCPQEMFD 272
NHP+QL+KT+L+P +VY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQCP E+FD
Sbjct: 240 NHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFD 299
Query: 273 VILDENQLEDACEHIAEYLEAYW 295
VILDENQLEDACEH+A+YLEAYW
Sbjct: 300 VILDENQLEDACEHLADYLEAYW 322
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/98 (85%), Positives = 93/98 (94%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRI ITRVTADISLAKRS++
Sbjct: 135 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVL 194
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
+NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQ+
Sbjct: 195 NNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQL 231
>pdb|1VYT|A Chain A, Beta3 Subunit Complexed With Aid
pdb|1VYT|B Chain B, Beta3 Subunit Complexed With Aid
Length = 351
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 181/343 (52%), Positives = 228/343 (66%), Gaps = 52/343 (15%)
Query: 4 GSAESNFSQPS--SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSID 61
GSA+S S+PS SD+SL+ QA QLE+A+ K VAFAVRTNV Y G +D
Sbjct: 1 GSADSYTSRPSLDSDVSLEEDRESARREVESQAQQQLERAKHKPVAFAVRTNVSYCGVLD 60
Query: 62 DDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRL-QQTQA 120
++ PV G V+F+ +FLHIKEKY ++WWIGRLVKEG + FIPSP +LE++RL Q+ +A
Sbjct: 61 EECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQKA 120
Query: 121 R---NPKLYSSKTSSTSNLGALSSD-----------------------APS--------- 145
R NP S + S +L+ PS
Sbjct: 121 RRSGNPSSLSDIGNRRSPPPSLAKQKQKQAEHVPPYDVVPSMRPVVLVGPSLKGYEVTDM 180
Query: 146 -------------PGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEI 192
G I ITRVTAD+SLAKRS+++NP KR I+ERS++RSS+ EVQ+EI
Sbjct: 181 MQKALFDFLKHRFDGRISITRVTADLSLAKRSVLNNPGKRTIIERSSARSSI-AEVQSEI 239
Query: 193 ERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRH 252
ER++ELA +LQLVVLD DTINHP+QLAKT+L+P IV++K+SSPKVLQRLI+SRGKSQ +H
Sbjct: 240 ERIFELAKSLQLVVLDADTINHPAQLAKTSLAPIIVFVKVSSPKVLQRLIRSRGKSQMKH 299
Query: 253 LNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYW 295
L VQM+A +KL QCP E FDVILDENQL+DACEH+AEYLE YW
Sbjct: 300 LTVQMMAYDKLVQCPPESFDVILDENQLDDACEHLAEYLEVYW 342
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 78/98 (79%), Positives = 92/98 (93%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRF+GRI ITRVTAD+SLAKRS++
Sbjct: 155 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADLSLAKRSVL 214
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
+NP KR I+ERS++RSS+ EVQ+EIER++ELA +LQ+
Sbjct: 215 NNPGKRTIIERSSARSSI-AEVQSEIERIFELAKSLQL 251
>pdb|1VYU|A Chain A, Beta3 Subunit Of Voltage-Gated Ca2+-Channel
pdb|1VYU|B Chain B, Beta3 Subunit Of Voltage-Gated Ca2+-Channel
Length = 351
Score = 330 bits (845), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 180/343 (52%), Positives = 226/343 (65%), Gaps = 52/343 (15%)
Query: 4 GSAESNFSQPS--SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSID 61
GSA+S S+PS SD+SL+ QA QLE+A+ K VAFAVRTNV Y G +D
Sbjct: 1 GSADSYTSRPSLDSDVSLEEDRESARREVESQAQQQLERAKHKPVAFAVRTNVSYCGVLD 60
Query: 62 DDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRL-QQTQA 120
++ PV G V+F+ +FLHIKEKY ++WWIGRLVKEG + FIPSP +LE++RL Q+ +A
Sbjct: 61 EECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQKA 120
Query: 121 R---NPKLYSSKTSSTSNLGALSSD-----------------------APS--------- 145
R NP S + S +L+ PS
Sbjct: 121 RRSGNPSSLSDIGNRRSPPPSLAKQKQKQAEHVPPYDVVPSXRPVVLVGPSLKGYEVTDX 180
Query: 146 -------------PGMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEI 192
G I ITRVTAD+SLAKRS+++NP KR I+ERS++RSS+ EVQ+EI
Sbjct: 181 XQKALFDFLKHRFDGRISITRVTADLSLAKRSVLNNPGKRTIIERSSARSSI-AEVQSEI 239
Query: 193 ERVYELASTLQLVVLDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRH 252
ER++ELA +LQLVVLD DTINHP+QLAKT+L+P IV++K+SSPKVLQRLI+SRGKSQ +H
Sbjct: 240 ERIFELAKSLQLVVLDADTINHPAQLAKTSLAPIIVFVKVSSPKVLQRLIRSRGKSQXKH 299
Query: 253 LNVQMVAAEKLAQCPQEMFDVILDENQLEDACEHIAEYLEAYW 295
L VQ A +KL QCP E FDVILDENQL+DACEH+AEYLE YW
Sbjct: 300 LTVQXXAYDKLVQCPPESFDVILDENQLDDACEHLAEYLEVYW 342
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/98 (76%), Positives = 89/98 (90%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
PYDVVPS RPVVLVGPSLKGYEVTD QKALFDFLKHRF+GRI ITRVTAD+SLAKRS++
Sbjct: 155 PYDVVPSXRPVVLVGPSLKGYEVTDXXQKALFDFLKHRFDGRISITRVTADLSLAKRSVL 214
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
+NP KR I+ERS++RSS+ EVQ+EIER++ELA +LQ+
Sbjct: 215 NNPGKRTIIERSSARSSI-AEVQSEIERIFELAKSLQL 251
>pdb|1T0J|B Chain B, Crystal Structure Of A Complex Between Voltage-Gated
Calcium Channel Beta2a Subunit And A Peptide Of The
Alpha1c Subunit
Length = 224
Score = 249 bits (636), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 122/150 (81%), Positives = 139/150 (92%), Gaps = 2/150 (1%)
Query: 147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVV
Sbjct: 58 GRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVV 116
Query: 207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
LD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +HLNVQMVAA+KLAQC
Sbjct: 117 LDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQC 176
Query: 267 -PQEMFDVILDENQLEDACEHIAEYLEAYW 295
PQE FDVILDENQLEDACEH+A+YLEAYW
Sbjct: 177 PPQESFDVILDENQLEDACEHLADYLEAYW 206
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/98 (85%), Positives = 93/98 (94%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRI ITRVTADISLAKRS++
Sbjct: 18 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVL 77
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
+NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQ+
Sbjct: 78 NNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQL 114
>pdb|1T0H|B Chain B, Crystal Structure Of The Rattus Norvegicus Voltage Gated
Calcium Channel Beta Subunit Isoform 2a
Length = 224
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/150 (80%), Positives = 138/150 (92%), Gaps = 2/150 (1%)
Query: 147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
G I ITRVTADISLAKRS+++NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQLVV
Sbjct: 58 GRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQLVV 116
Query: 207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
LD DTINHP+QL+KT+L+P IVY+KISSPKVLQRLIKSRGKSQ +HLNVQ VAA+KLAQC
Sbjct: 117 LDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQXVAADKLAQC 176
Query: 267 -PQEMFDVILDENQLEDACEHIAEYLEAYW 295
PQE FDVILDENQLEDACEH+A+YLEAYW
Sbjct: 177 PPQESFDVILDENQLEDACEHLADYLEAYW 206
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/98 (82%), Positives = 90/98 (91%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
PYDVVPS RPVVLVGPSLKGYEVTD QKALFDFLKHRFEGRI ITRVTADISLAKRS++
Sbjct: 18 PYDVVPSXRPVVLVGPSLKGYEVTDXXQKALFDFLKHRFEGRISITRVTADISLAKRSVL 77
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
+NPSK AI+ERSN+RSS L EVQ+EIER++ELA TLQ+
Sbjct: 78 NNPSKHAIIERSNTRSS-LAEVQSEIERIFELARTLQL 114
>pdb|1VYV|A Chain A, Beta4 Subunit Of Ca2+ Channel
pdb|1VYV|B Chain B, Beta4 Subunit Of Ca2+ Channel
Length = 359
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/149 (78%), Positives = 138/149 (92%), Gaps = 1/149 (0%)
Query: 147 GMIIITRVTADISLAKRSLMSNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQLVV 206
G I ITRVTADISLAKRS+++NPSKRAI+ERSN++SS L EVQ+EIER++ELA +LQLVV
Sbjct: 203 GRISITRVTADISLAKRSVLNNPSKRAIIERSNTKSS-LAEVQSEIERIFELARSLQLVV 261
Query: 207 LDCDTINHPSQLAKTNLSPCIVYLKISSPKVLQRLIKSRGKSQTRHLNVQMVAAEKLAQC 266
LD DTINHP+QL KT+L+P IV++K+SSPKVLQRLIKSRGKSQ++HLNVQ+VAA+KLAQC
Sbjct: 262 LDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQC 321
Query: 267 PQEMFDVILDENQLEDACEHIAEYLEAYW 295
P E FDVILDENQLEDACEH+ EYLEAYW
Sbjct: 322 PPEXFDVILDENQLEDACEHLGEYLEAYW 350
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/98 (80%), Positives = 91/98 (92%), Gaps = 1/98 (1%)
Query: 408 PYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIIITRVTADISLAKRSLM 467
PYDVVPS RPVVLVGPSLKGYEVTD QKALFDFLKHRF+GRI ITRVTADISLAKRS++
Sbjct: 163 PYDVVPSXRPVVLVGPSLKGYEVTDXXQKALFDFLKHRFDGRISITRVTADISLAKRSVL 222
Query: 468 SNPSKRAIMERSNSRSSVLTEVQTEIERVYELASTLQV 505
+NPSKRAI+ERSN++SS L EVQ+EIER++ELA +LQ+
Sbjct: 223 NNPSKRAIIERSNTKSS-LAEVQSEIERIFELARSLQL 259
Score = 144 bits (364), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 89/120 (74%), Gaps = 1/120 (0%)
Query: 4 GSAESNFSQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSIDD 62
GSA+S S+PS SD+SL+ QA QLE+A++K VAFAV+TNV Y G++D+
Sbjct: 1 GSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDE 60
Query: 63 DSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQARN 122
D PV AVSFD +FLHIKEKY+++WWIGRLVKEG E GFIPSP++LEN+R+QQ Q R
Sbjct: 61 DVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRK 120
>pdb|1T0J|A Chain A, Crystal Structure Of A Complex Between Voltage-Gated
Calcium Channel Beta2a Subunit And A Peptide Of The
Alpha1c Subunit
Length = 132
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 96/130 (73%), Gaps = 2/130 (1%)
Query: 3 VGSAESNFSQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSID 61
+GSA+S S+PS SD+SL+ QA +QLEKA+ K VAFAVRTNV+Y + +
Sbjct: 3 MGSADSYTSRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVRYSAAQE 62
Query: 62 DDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-A 120
DD PV G A+SF+ +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN+RLQ Q A
Sbjct: 63 DDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRA 122
Query: 121 RNPKLYSSKT 130
+ K YSSK+
Sbjct: 123 KQGKFYSSKS 132
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 330 MGSAESNFSQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARV 370
MGSA+S S+PS SD+SL+ QA +QLEKA+
Sbjct: 3 MGSADSYTSRPSDSDVSLEEDREAVRREAERQAQAQLEKAKT 44
>pdb|1T0H|A Chain A, Crystal Structure Of The Rattus Norvegicus Voltage Gated
Calcium Channel Beta Subunit Isoform 2a
Length = 132
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/129 (58%), Positives = 94/129 (72%), Gaps = 2/129 (1%)
Query: 4 GSAESNFSQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARAKNVAFAVRTNVKYDGSIDD 62
GSA+S S+PS SD+SL+ QA +QLEKA+ K VAFAVRTNV+Y + +D
Sbjct: 4 GSADSYTSRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVRYSAAQED 63
Query: 63 DSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSECGFIPSPVKLENLRLQQTQ-AR 121
D PV G A+SF+ +FLH+KEK++++WWIGRLVKEG E GFIPSPVKLEN RLQ Q A+
Sbjct: 64 DVPVPGXAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENXRLQHEQRAK 123
Query: 122 NPKLYSSKT 130
K YSSK+
Sbjct: 124 QGKFYSSKS 132
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 331 GSAESNFSQPS-SDLSLDXXXXXXXXXXXXQALSQLEKARV 370
GSA+S S+PS SD+SL+ QA +QLEKA+
Sbjct: 4 GSADSYTSRPSDSDVSLEEDREAVRREAERQAQAQLEKAKT 44
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC---GF 103
F +R YD + D A+SF + LH+ + D WW R V SE GF
Sbjct: 427 GFYIRALFDYDKT--KDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGF 484
Query: 104 IPSPVKLENLRLQQTQARN 122
IPS ++E + +A++
Sbjct: 485 IPSKRRVERREWSRLKAKD 503
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC---GF 103
F +R YD + D A+SF + LH+ + D WW R V SE GF
Sbjct: 7 GFYIRALFDYDKT--KDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGF 64
Query: 104 IPSPVKLENLRLQQTQARN 122
IPS ++E + +A++
Sbjct: 65 IPSKRRVERREWSRLKAKD 83
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVKEGSEC---GF 103
F +R YD + D A+SF + LH+ + D WW R V SE GF
Sbjct: 1 GFYIRALFDYDKT--KDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGF 58
Query: 104 IPSPVKLENLRLQQTQARN 122
IPS ++E + +A++
Sbjct: 59 IPSKRRVERREWSRLKAKD 77
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 50 VRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLVK---EGSECGFIPS 106
VR YD + D P G ++F + LH+ D WW R V E E G IPS
Sbjct: 14 VRALFDYDKTKDSGLPSQG--LNFKFGDILHVINASDDEWWQARQVTPDGESDEVGVIPS 71
Query: 107 PVKLE 111
++E
Sbjct: 72 KRRVE 76
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 47 AFAVRTNVKYDGSIDDDSPVHGYAVSFDIHEFLHIKEKYDSNWWIGRLV---KEGSECGF 103
+ VR YD + DD P G + F + LH+ D WW R V E + G
Sbjct: 5 SLYVRALFDYDPNRDDGLPSRG--LPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGI 62
Query: 104 IPSPVKLE 111
+PS + E
Sbjct: 63 VPSKRRWE 70
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 438 LFDFLKHRFEGRIIITRVTADISLAKRSLM--SNPSKRAIMERSNSRSSVLTEVQTE 492
+F L+ RI+ RV A I LAK+ ++ S+P R + + + VLT VQT+
Sbjct: 9 VFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTL--YDPMNGVLTSVQTK 63
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 83 EKYDSNWWIGRLVKEGSECGFIPS 106
E D +WW+G L K+GS+ G PS
Sbjct: 29 EFVDDDWWLGELEKDGSK-GLFPS 51
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 83 EKYDSNWWIGRLVKEGSECGFIPS 106
E D +WW+G L K+GS+ G PS
Sbjct: 30 EFVDDDWWLGELEKDGSK-GLFPS 52
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 83 EKYDSNWWIGRLVKEGSECGFIPS 106
E D +WW+G L K+GS+ G PS
Sbjct: 33 EFVDDDWWLGELEKDGSK-GLFPS 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,761,607
Number of Sequences: 62578
Number of extensions: 343633
Number of successful extensions: 695
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 42
length of query: 510
length of database: 14,973,337
effective HSP length: 103
effective length of query: 407
effective length of database: 8,527,803
effective search space: 3470815821
effective search space used: 3470815821
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)